RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 036996
         (214 letters)



>d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId:
           9823]}
          Length = 476

 Score =  181 bits (460), Expect = 2e-55
 Identities = 84/198 (42%), Positives = 119/198 (60%), Gaps = 8/198 (4%)

Query: 21  LEPKSFSDESKAVIDFIADYYKNIEKYPVQSKVEPGYLSARLPDTAPHSPESLDDILKDV 80
           +    F    K ++D++ADY + IE   V   V+PGYL   +P TAP  P++ +DIL+DV
Sbjct: 1   MNASDFRRRGKEMVDYMADYLEGIEGRQVYPDVQPGYLRPLIPATAPQEPDTFEDILQDV 60

Query: 81  TDCILPGLTHWQSPNFFGYFQANASTAGFLGEMLCSGFNVVGFNWLASPVATELESIVMD 140
              I+PG+THW SP FF YF   +S    L +MLC     +GF+W ASP  TELE+++MD
Sbjct: 61  EKIIMPGVTHWHSPYFFAYFPTASSYPAMLADMLCGAIGCIGFSWAASPACTELETVMMD 120

Query: 141 WMGKMLKLPSSFLFSGTG--GGVLHGSTCESLVCTLAAARDKALEKLGGGFDNIT----- 193
           W+GKML+LP +FL    G  GGV+ GS  E+ +  L AAR K + +L      +T     
Sbjct: 121 WLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRLQAASPGLTQGAVL 180

Query: 194 -KLAVYASDQTHFALQKS 210
            KL  YASDQ H +++++
Sbjct: 181 EKLVAYASDQAHSSVERA 198


>d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB
           {Escherichia coli [TaxId: 562]}
          Length = 450

 Score = 89.2 bits (220), Expect = 2e-21
 Identities = 21/183 (11%), Positives = 51/183 (27%), Gaps = 14/183 (7%)

Query: 31  KAVIDFIADYYKNIEKYPVQSKVEPGYLSARLPDTAPHSPESLDDILKDVTDCILPGLTH 90
           K V D  ++   +       S +       R P       +    I+ D  +  L G   
Sbjct: 2   KQVTDLRSELLDSRFGAKSISTIAESK---RFPL-HEMRDDVAFQIIND--ELYLDGNAR 55

Query: 91  WQSPNFFGYFQANASTAGFLGEMLCSGFNVVGFNWLASPVATELESIVMDWMGKMLKLPS 150
               N   +          + +++    N    +    P +  ++   ++ +  +   P+
Sbjct: 56  Q---NLATF--CQTWDDENVHKLMDLSINKNWIDKEEYPQSAAIDLRCVNMVADLWHAPA 110

Query: 151 SFLFSGTGGGVLHGSTCESLVCTLAAARDKALEKLGGGFDNITKLAVYASDQTHFALQKS 210
                  G   +  S  E+ +    A + +  +++       T               K 
Sbjct: 111 PKNGQAVGTNTIGSS--EACMLGGMAMKWRWRKRMEAA-GKPTDKPNLVCGPVQICWHKF 167

Query: 211 AKL 213
           A+ 
Sbjct: 168 ARY 170


>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast
           (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 214

 Score = 26.4 bits (57), Expect = 2.2
 Identities = 9/66 (13%), Positives = 22/66 (33%), Gaps = 9/66 (13%)

Query: 44  IEKYPVQSKVEPGY--LSARLPDTAPH-------SPESLDDILKDVTDCILPGLTHWQSP 94
            E    Q KV+  +  L  +              + + + ++   +   + P L+     
Sbjct: 149 YETVKFQEKVKQTFMKLLDKEIRKGDESITIVDVTNKGIQEVEALIWQIVEPVLSTHIDH 208

Query: 95  NFFGYF 100
           + F +F
Sbjct: 209 DKFSFF 214


>d2foka2 a.4.5.12 (A:144-286) Restriction endonuclease FokI,
           N-terminal (recognition) domain {Flavobacterium
           okeanokoites [TaxId: 244]}
          Length = 143

 Score = 25.7 bits (56), Expect = 3.4
 Identities = 12/40 (30%), Positives = 18/40 (45%), Gaps = 7/40 (17%)

Query: 108 GFLGEMLCSGFNV----VGFNWLASPVATELESIVMDWMG 143
           GF GE   SGF      +  + LA+ +  +   I  +W G
Sbjct: 42  GFSGE---SGFTSLPEGILLDTLANAMPKDKGEIRNNWEG 78


>d1xpca_ a.123.1.1 (A:) Estrogen receptor alpha {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 245

 Score = 25.4 bits (55), Expect = 5.6
 Identities = 16/74 (21%), Positives = 27/74 (36%), Gaps = 1/74 (1%)

Query: 52  KVEPGYLSARLPDTAPHSPESLDDILKDVTDCILPGLTHWQSPNFFGYFQANASTAGFLG 111
             EP  L +    T P S  S+  +L ++ D  L  + +W +    G+          L 
Sbjct: 15  DAEPPILYSEYDPTRPFSEASMMGLLTNLADRELVHMINW-AKRVPGFVDLTLHDQVHLL 73

Query: 112 EMLCSGFNVVGFNW 125
           E       ++G  W
Sbjct: 74  ECAWLEILMIGLVW 87


>d1t7ra_ a.123.1.1 (A:) Androgen receptor {Chimpanzee (Pan
          troglodytes) [TaxId: 9598]}
          Length = 250

 Score = 24.7 bits (53), Expect = 8.8
 Identities = 10/39 (25%), Positives = 18/39 (46%)

Query: 53 VEPGYLSARLPDTAPHSPESLDDILKDVTDCILPGLTHW 91
          +EPG + A   +  P S  +L   L ++ +  L  +  W
Sbjct: 12 IEPGVVCAGHDNNQPDSFAALLSSLNELGERQLVHVVKW 50


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.134    0.404 

Gapped
Lambda     K      H
   0.267   0.0585    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 796,392
Number of extensions: 35018
Number of successful extensions: 83
Number of sequences better than 10.0: 1
Number of HSP's gapped: 80
Number of HSP's successfully gapped: 8
Length of query: 214
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 132
Effective length of database: 1,281,736
Effective search space: 169189152
Effective search space used: 169189152
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.7 bits)