BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036998
(265 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3SWM|A Chain A, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWM|B Chain B, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWM|C Chain C, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWM|D Chain D, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWP|A Chain A, Anac019 Nac Domain In Complex With Dna
pdb|3SWP|B Chain B, Anac019 Nac Domain In Complex With Dna
pdb|3SWP|C Chain C, Anac019 Nac Domain In Complex With Dna
pdb|3SWP|D Chain D, Anac019 Nac Domain In Complex With Dna
Length = 174
Score = 194 bits (494), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 89/157 (56%), Positives = 114/157 (72%), Gaps = 3/157 (1%)
Query: 1 MAPMSLPPGFRFHPTDEELVAYYLDRKINGRTIELEIIPEIDLYKHEPWDLPDKSYLPGK 60
+ +SLPPGFRF+PTDEEL+ YL RK G L++I EIDLYK +PW LP+K+ K
Sbjct: 15 LTQLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEK 74
Query: 61 DMEWYFFSPRDKKYPNGSRTNRATRAGYWKATGKDRTVHSHKQSVGMKKTLVYYRGRAPH 120
EWYFFSPRD+KYPNGSR NR +GYWKATG D+ + + Q VG+KK LV+Y G+AP
Sbjct: 75 --EWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIISTEGQRVGIKKALVFYIGKAPK 132
Query: 121 GIRTNWVMHEYRLLDPLSGAASSSLKDSYALCRVFKK 157
G +TNW+MHEYRL++P S+ L D + LCR++KK
Sbjct: 133 GTKTNWIMHEYRLIEPSRRNGSTKL-DDWVLCRIYKK 168
>pdb|1UT4|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|1UT4|B Chain B, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|1UT7|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|1UT7|B Chain B, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|4DUL|A Chain A, Anac019 Nac Domain Crystal Form Iv
pdb|4DUL|B Chain B, Anac019 Nac Domain Crystal Form Iv
Length = 171
Score = 194 bits (494), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 89/157 (56%), Positives = 114/157 (72%), Gaps = 3/157 (1%)
Query: 1 MAPMSLPPGFRFHPTDEELVAYYLDRKINGRTIELEIIPEIDLYKHEPWDLPDKSYLPGK 60
+ +SLPPGFRF+PTDEEL+ YL RK G L++I EIDLYK +PW LP+K+ K
Sbjct: 12 LTQLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEK 71
Query: 61 DMEWYFFSPRDKKYPNGSRTNRATRAGYWKATGKDRTVHSHKQSVGMKKTLVYYRGRAPH 120
EWYFFSPRD+KYPNGSR NR +GYWKATG D+ + + Q VG+KK LV+Y G+AP
Sbjct: 72 --EWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIISTEGQRVGIKKALVFYIGKAPK 129
Query: 121 GIRTNWVMHEYRLLDPLSGAASSSLKDSYALCRVFKK 157
G +TNW+MHEYRL++P S+ L D + LCR++KK
Sbjct: 130 GTKTNWIMHEYRLIEPSRRNGSTKL-DDWVLCRIYKK 165
>pdb|3ULX|A Chain A, Crystal Structural Of The Conserved Domain Of Rice
Stress-Responsive Nac1
Length = 174
Score = 179 bits (455), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 86/160 (53%), Positives = 117/160 (73%), Gaps = 6/160 (3%)
Query: 2 APMSLPPGFRFHPTDEELVAYYLDRKINGRTIELEIIPEIDLYKHEPWDLPDKSYLPGKD 61
A ++LPPGFRFHPTD+ELV +YL RK G+ + + II E+DLYK +PWDLP+++ +
Sbjct: 11 AELNLPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDLPERALFGAR- 69
Query: 62 MEWYFFSPRDKKYPNGSRTNRATRAGYWKATGKDRTVHSHKQSVGMKKTLVYYRGRAPHG 121
EWYFF+PRD+KYPNGSR NRA GYWKATG D+ V +++G+KK LV+Y G+AP G
Sbjct: 70 -EWYFFTPRDRKYPNGSRPNRAAGNGYWKATGADKPVAPRGRTLGIKKALVFYAGKAPRG 128
Query: 122 IRTNWVMHEYRL---LDPLSGAASSSLK-DSYALCRVFKK 157
++T+W+MHEYRL +GA SL+ D + LCR++ K
Sbjct: 129 VKTDWIMHEYRLADAGRAAAGAKKGSLRLDDWVLCRLYNK 168
>pdb|2V0P|A Chain A, The Structure Of Tap42 Alpha4 Subunit
pdb|2V0P|B Chain B, The Structure Of Tap42 Alpha4 Subunit
Length = 234
Score = 30.4 bits (67), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 20/39 (51%)
Query: 111 LVYYRGRAPHGIRTNWVMHEYRLLDPLSGAASSSLKDSY 149
L+Y + I ++ +Y+LLDPL G + KD Y
Sbjct: 101 LIYLKKSVESFINFLTLLQDYKLLDPLVGEKLGNFKDRY 139
>pdb|2AN7|A Chain A, Solution Structure Of The Bacterial Antidote Pard
pdb|2AN7|B Chain B, Solution Structure Of The Bacterial Antidote Pard
Length = 83
Score = 29.6 bits (65), Expect = 1.9, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 4/72 (5%)
Query: 129 HEYRLLDPLSGAASSSLKDSYALCRVFKKTIQIPKAKESLQEAMGNNNND---AENQTET 185
+++ L L+ ++K YAL R+F +A + L+ +GN ND + T++
Sbjct: 11 QQHQSLKALAALQGKTIK-QYALERLFPGDADADQAWQELKTMLGNRINDGLAGKVSTKS 69
Query: 186 VGFSSDEQMLGD 197
VG DE++ GD
Sbjct: 70 VGEILDEELSGD 81
>pdb|3TZ0|A Chain A, Crystal Structure Of Branched-Chain Alpha-Ketoacid
Dehydrogenase KinaseS-Alpha-Chloroisocaproate Complex
pdb|3TZ2|A Chain A, Crystal Structure Of Branched-Chain Alpha-Ketoacid
Dehydrogenase KinasePHENYLBUTYRATE COMPLEX
pdb|3TZ4|A Chain A, Crystal Structure Of Branched-Chain Alpha-Ketoacid
Dehydrogenase KinaseS-Alpha-Chloroisocaproate Complex
With Adp
pdb|3TZ5|A Chain A, Crystal Structure Of Branched-Chain Alpha-Ketoacid
Dehydrogenase KinasePHENYLBUTYRATE COMPLEX WITH ADP
Length = 418
Score = 28.1 bits (61), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 38/80 (47%), Gaps = 12/80 (15%)
Query: 11 RFHPTDEELVAYYLDRKINGRTIELEIIPEIDLYKHEPWDLPDKSYL------PGKDME- 63
R H DE+LV Y+LD+ + R + + ++ L HE D PD + P K +E
Sbjct: 177 RKHIEDEKLVRYFLDKTLTSR-LGIRMLATHHLALHE--DKPDFVGIICTRLSPKKIIEK 233
Query: 64 WYFFSPR--DKKYPNGSRTN 81
W F+ R + KY N R
Sbjct: 234 WVDFARRLCEHKYGNAPRVR 253
>pdb|1GJV|A Chain A, Branched-chain Alpha-ketoacid Dehydrogenase Kinase (bck)
Complxed With Atp-gamma-s
pdb|1GKX|A Chain A, Branched-Chain Alpha-Ketoacid Dehydrogenase Kinase (Bck)
pdb|1GKZ|A Chain A, Branched-Chain Alpha-Ketoacid Dehydrogenase Kinase (Bck)
Complxed With Adp
Length = 388
Score = 28.1 bits (61), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 38/79 (48%), Gaps = 12/79 (15%)
Query: 11 RFHPTDEELVAYYLDRKINGRTIELEIIPEIDLYKHEPWDLPDKSYL------PGKDME- 63
R H DE+LV Y+LD+ + R + + ++ L HE D PD + P K +E
Sbjct: 147 RKHIEDEKLVRYFLDKTLTSR-LGIRMLATHHLALHE--DKPDFVGIICTRLSPKKIIEK 203
Query: 64 WYFFSPR--DKKYPNGSRT 80
W F+ R + KY N R
Sbjct: 204 WVDFARRLCEHKYGNAPRV 222
>pdb|3VAD|A Chain A, Crystal Structure Of I170f Mutant Branched-chain
Alpha-ketoacid Dehydrogenase Kinase In Complex With
3,6-dichlorobenzo[b]thiophene-2- Carboxylic Acid
Length = 418
Score = 27.3 bits (59), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 37/80 (46%), Gaps = 12/80 (15%)
Query: 11 RFHPTDEELVAYYLDRKINGRTIELEIIPEIDLYKHEPWDLPDKSYL------PGKDME- 63
R H DE+LV Y+LD+ + R + ++ L HE D PD + P K +E
Sbjct: 177 RKHIEDEKLVRYFLDKTLTSR-LGFRMLATHHLALHE--DKPDFVGIICTRLSPKKIIEK 233
Query: 64 WYFFSPR--DKKYPNGSRTN 81
W F+ R + KY N R
Sbjct: 234 WVDFARRLCEHKYGNAPRVR 253
>pdb|1PZ3|A Chain A, Crystal Structure Of A Family 51 (gh51)
Alpha-l-arabinofuranosidase From Geobacillus
Stearothermophilus T6
pdb|1PZ3|B Chain B, Crystal Structure Of A Family 51 (gh51)
Alpha-l-arabinofuranosidase From Geobacillus
Stearothermophilus T6
Length = 502
Score = 27.3 bits (59), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Query: 227 TEAGNVNADEFQ--APFISDEANSAVNMYSLGVDFTTNLIQ 265
E + +EF A + E N AVN+ + G+D NL++
Sbjct: 102 VETNEIGLNEFMDWAKMVGAEVNMAVNLGTRGIDAARNLVE 142
>pdb|3CQ0|A Chain A, Crystal Structure Of Tal2_yeast
pdb|3CQ0|B Chain B, Crystal Structure Of Tal2_yeast
Length = 339
Score = 27.3 bits (59), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 60/136 (44%), Gaps = 14/136 (10%)
Query: 88 YWKA-TGKDRTVHSHKQSVGMKKTLVYYRGRAPHGIRTNWVMHEYRLLDPLSGAASSSLK 146
++KA +GKD T + + +KK YY+ HG T + +R LD L A
Sbjct: 198 FYKALSGKDYTAETDPGVLSVKKIYSYYK---RHGYATEVMAASFRNLDELKALAGI--- 251
Query: 147 DSYALCRVFKKTIQIPKAKESLQEAMGNNNNDAENQTETVGFSSDE----QMLGDDTSGR 202
D+ L + Q+ ++ + ++ + N+ + E E V F +DE +L +D
Sbjct: 252 DNMTLPLNLLE--QLYESTDPIENKL-NSESAKEEGVEKVSFINDEPHFRYVLNEDQMAT 308
Query: 203 EAEENDYSKFPSDTSS 218
E + KF +D +
Sbjct: 309 EKLSDGIRKFSADIEA 324
>pdb|1PZ2|A Chain A, Crystal Structure Of A Transient Covalent Reaction
Intermediate Of A Family 51 Alpha-L-Arabinofuranosidase
pdb|1PZ2|B Chain B, Crystal Structure Of A Transient Covalent Reaction
Intermediate Of A Family 51 Alpha-L-Arabinofuranosidase
pdb|1QW8|A Chain A, Crystal Structure Of A Family 51 Alpha-L-
Arabinofuranosidase In Complex With Ara-Alpha(1,3)-Xyl
pdb|1QW8|B Chain B, Crystal Structure Of A Family 51 Alpha-L-
Arabinofuranosidase In Complex With Ara-Alpha(1,3)-Xyl
pdb|1QW9|A Chain A, Crystal Structure Of A Family 51 Alpha-L-
Arabinofuranosidase In Complex With 4-Nitrophenyl-Ara
pdb|1QW9|B Chain B, Crystal Structure Of A Family 51 Alpha-L-
Arabinofuranosidase In Complex With 4-Nitrophenyl-Ara
Length = 502
Score = 27.3 bits (59), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Query: 227 TEAGNVNADEFQ--APFISDEANSAVNMYSLGVDFTTNLIQ 265
E + +EF A + E N AVN+ + G+D NL++
Sbjct: 102 VETNEIGLNEFMDWAKMVGAEVNMAVNLGTRGIDAARNLVE 142
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.130 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,614,077
Number of Sequences: 62578
Number of extensions: 377646
Number of successful extensions: 499
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 489
Number of HSP's gapped (non-prelim): 14
length of query: 265
length of database: 14,973,337
effective HSP length: 97
effective length of query: 168
effective length of database: 8,903,271
effective search space: 1495749528
effective search space used: 1495749528
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 50 (23.9 bits)