Query 036998
Match_columns 265
No_of_seqs 152 out of 964
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 12:27:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036998.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036998hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ulx_A Stress-induced transcri 100.0 2.7E-55 9.3E-60 376.5 15.2 158 2-161 11-172 (174)
2 1ut7_A No apical meristem prot 100.0 5E-55 1.7E-59 374.1 12.9 156 2-160 13-168 (171)
3 1cmb_A Met APO-repressor; DNA- 33.2 45 0.0015 25.0 3.8 38 13-54 50-87 (104)
4 1ldd_A APC2WHB, anaphase promo 31.9 22 0.00075 25.6 1.9 27 7-34 37-64 (74)
5 3nr5_A MAF1, repressor of RNA 15.5 44 0.0015 27.6 0.8 12 38-49 119-130 (164)
6 4dox_A Coat protein; all helix 11.4 91 0.0031 27.1 1.6 21 8-28 157-177 (226)
7 2oh5_A Polyhedrin, C-polyhedri 10.5 1.4E+02 0.0048 24.9 2.4 27 87-113 141-168 (248)
8 3fyr_A Sporulation inhibitor S 10.2 1.3E+02 0.0044 19.9 1.6 23 14-38 6-28 (48)
9 3fkr_A L-2-keto-3-deoxyarabona 9.6 1.4E+02 0.0047 26.5 2.2 21 5-25 109-131 (309)
10 3cpr_A Dihydrodipicolinate syn 9.4 1E+02 0.0036 27.2 1.3 18 6-24 118-135 (304)
No 1
>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} SCOP: b.143.1.1
Probab=100.00 E-value=2.7e-55 Score=376.45 Aligned_cols=158 Identities=54% Similarity=1.083 Sum_probs=135.0
Q ss_pred CCCCCCCCceECCChHHHHHHHHHHHHcCCCCCCCceeeccCCCCCCCCCCccCCCCCCCceEEeeccCCCCCCCCCCcc
Q 036998 2 APMSLPPGFRFHPTDEELVAYYLDRKINGRTIELEIIPEIDLYKHEPWDLPDKSYLPGKDMEWYFFSPRDKKYPNGSRTN 81 (265)
Q Consensus 2 ap~~LPpGfRF~PTDeELV~~YL~~Ki~G~pl~~~~I~e~DVY~~~PwdLp~~~~~~~~d~~wYFFs~r~~k~~~G~R~~ 81 (265)
+.+.|||||||+|||||||.|||++|+.|.+++..+|+++|||++|||+||+.+.. ++.+||||+++.+|+++|.|++
T Consensus 11 ~~~~LPpGfRF~PTDeELV~~YL~~K~~g~~~~~~~I~evDvy~~~Pw~Lp~~~~~--g~~ewYFFs~r~~ky~~g~R~n 88 (174)
T 3ulx_A 11 AELNLPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDLPERALF--GAREWYFFTPRDRKYPNGSRPN 88 (174)
T ss_dssp STTTCCTTCCCCCCHHHHHHHTHHHHHHTCCCSSSCCEECCGGGSCGGGSGGGCSS--CSSEEEEEEECCC-----CCSC
T ss_pred cccCCCCcceeCCCHHHHHHHHHHHHhcCCCCCcCeeeecccccCCchhhhhhhcc--CCceEEEEeccccccCCCCCce
Confidence 56789999999999999999999999999999999999999999999999988643 3569999999999999999999
Q ss_pred eeccCceeeecCCCeEEecCccceeeEEEEEeecCCCCCCCCcCeEEEEEEeCCCCCCCC----CCCCCCceEEEEEEec
Q 036998 82 RATRAGYWKATGKDRTVHSHKQSVGMKKTLVYYRGRAPHGIRTNWVMHEYRLLDPLSGAA----SSSLKDSYALCRVFKK 157 (265)
Q Consensus 82 R~t~gG~Wk~~G~~k~I~~~~~~VG~KrtL~Fy~g~~~~g~kT~W~M~EY~l~~~~~~~~----~~~~~~~~VLCKIy~k 157 (265)
|+|++||||++|+++.|.+.+.+||+|++|+||.++++++.||+|+||||+|........ .....++|||||||+|
T Consensus 89 R~t~~G~WkatG~dk~I~~~g~~vG~KktLvFy~g~~p~g~kT~WvMhEY~L~~~~~~~~~~~~~~~~~~~wVlCrvf~K 168 (174)
T 3ulx_A 89 RAAGNGYWKATGADKPVAPRGRTLGIKKALVFYAGKAPRGVKTDWIMHEYRLADAGRAAAGAKKGSLRLDDWVLCRLYNK 168 (174)
T ss_dssp EEETTEEEEECSCCEEECCSSSCCEEEEEEEEEESSTTSCEEEEEEEEEEEECSCC-----------CCSSEEEEEEEES
T ss_pred eecCCceEccCCCCcEEeeCCcEEEEEEEEEEecCCCCCCCcCCeEEEEEEeCCCCCcccccccCCCCCCCEEEEEEEEc
Confidence 999999999999999999889999999999999999999999999999999998754320 1124578999999998
Q ss_pred CCCC
Q 036998 158 TIQI 161 (265)
Q Consensus 158 ~~~~ 161 (265)
+...
T Consensus 169 ~~~~ 172 (174)
T 3ulx_A 169 KNEW 172 (174)
T ss_dssp CC--
T ss_pred CCCc
Confidence 8643
No 2
>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A
Probab=100.00 E-value=5e-55 Score=374.07 Aligned_cols=156 Identities=56% Similarity=1.078 Sum_probs=131.2
Q ss_pred CCCCCCCCceECCChHHHHHHHHHHHHcCCCCCCCceeeccCCCCCCCCCCccCCCCCCCceEEeeccCCCCCCCCCCcc
Q 036998 2 APMSLPPGFRFHPTDEELVAYYLDRKINGRTIELEIIPEIDLYKHEPWDLPDKSYLPGKDMEWYFFSPRDKKYPNGSRTN 81 (265)
Q Consensus 2 ap~~LPpGfRF~PTDeELV~~YL~~Ki~G~pl~~~~I~e~DVY~~~PwdLp~~~~~~~~d~~wYFFs~r~~k~~~G~R~~ 81 (265)
+.+.|||||||+|||||||.|||++|+.|.+++.++|+++|||.+|||+||+.+. .++.+||||+++.+|+++|.|++
T Consensus 13 ~~~~lPpGfRF~PTDeELv~~YL~~K~~g~~~~~~~I~e~Diy~~~Pw~Lp~~~~--~g~~ewyFFs~r~~k~~~g~R~~ 90 (171)
T 1ut7_A 13 TQLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKAL--FGEKEWYFFSPRDRKYPNGSRPN 90 (171)
T ss_dssp CSSCCCTTEEECCCHHHHHHHTHHHHHTTCCCSSCCSEECCGGGSCGGGHHHHSS--SCSSEEEEEEECCC-------CC
T ss_pred cccCCCCcceeCCChHHHHHHHHHHHhcCCCCCCCeEeecccccCChhHhhchhh--cCCccEEEEeccccccCCCCccc
Confidence 4678999999999999999999999999999999999999999999999999864 34679999999999999999999
Q ss_pred eeccCceeeecCCCeEEecCccceeeEEEEEeecCCCCCCCCcCeEEEEEEeCCCCCCCCCCCCCCceEEEEEEecCCC
Q 036998 82 RATRAGYWKATGKDRTVHSHKQSVGMKKTLVYYRGRAPHGIRTNWVMHEYRLLDPLSGAASSSLKDSYALCRVFKKTIQ 160 (265)
Q Consensus 82 R~t~gG~Wk~~G~~k~I~~~~~~VG~KrtL~Fy~g~~~~g~kT~W~M~EY~l~~~~~~~~~~~~~~~~VLCKIy~k~~~ 160 (265)
|+|++||||++|+++.|.+.+.+||+|++|+||.++++++.||+|+||||+|....... .....++|||||||+|+..
T Consensus 91 R~t~~G~Wk~tG~~k~I~~~~~~vG~KktLvFy~g~~p~g~kT~WvMhEY~l~~~~~~~-~~~~~~~~VlCrv~~k~~~ 168 (171)
T 1ut7_A 91 RVAGSGYWKATGTDKIISTEGQRVGIKKALVFYIGKAPKGTKTNWIMHEYRLIEPSRRN-GSTKLDDWVLCRIYKKQSS 168 (171)
T ss_dssp EEETTEEEEEEEEEEEEEETTEEEEEEEEEEEEESSTTSCEEEEEEEEEEEECCCC---------CCEEEEEEEECC--
T ss_pred ccCCCCEEeccCCCceEEecCcEEEEEEEEEEEcCcCCCCCcCCeEEEEEEcCCCcccc-CcccCCCEEEEEEEEcCCC
Confidence 99999999999999999988899999999999999999999999999999999864221 2235689999999999864
No 3
>1cmb_A Met APO-repressor; DNA-binding regulatory protein; 1.80A {Escherichia coli} SCOP: a.43.1.5 PDB: 1cma_A 1cmc_A* 1mjl_A* 1mj2_A 1mjk_A* 1mjm_A 1mjo_A* 1mjp_A 1mjq_A*
Probab=33.15 E-value=45 Score=25.05 Aligned_cols=38 Identities=24% Similarity=0.403 Sum_probs=31.1
Q ss_pred CCChHHHHHHHHHHHHcCCCCCCCceeeccCCCCCCCCCCcc
Q 036998 13 HPTDEELVAYYLDRKINGRTIELEIIPEIDLYKHEPWDLPDK 54 (265)
Q Consensus 13 ~PTDeELV~~YL~~Ki~G~pl~~~~I~e~DVY~~~PwdLp~~ 54 (265)
|-|-.||++.-...-..|+|||. +.|+-...|.++|..
T Consensus 50 HATNSELLCEAFLHA~TGQPLP~----D~Dl~Kd~~d~iP~~ 87 (104)
T 1cmb_A 50 HATNSELLCEAFLHAFTGQPLPD----DADLRKERSDEIPEA 87 (104)
T ss_dssp CCSHHHHHHHHHHHHHHCCCCCC----GGGGBTTSCSCSCHH
T ss_pred hcccHHHHHHHHHHHhcCCCCCC----chhhhhcCCccchHH
Confidence 46788999876777789999994 578999999999865
No 4
>1ldd_A APC2WHB, anaphase promoting complex; ubiquitin, ligase, ubiquitination, ring finger, winged-helix; 2.00A {Saccharomyces cerevisiae} SCOP: a.4.5.34
Probab=31.92 E-value=22 Score=25.65 Aligned_cols=27 Identities=19% Similarity=0.430 Sum_probs=22.4
Q ss_pred CCCceECC-ChHHHHHHHHHHHHcCCCCC
Q 036998 7 PPGFRFHP-TDEELVAYYLDRKINGRTIE 34 (265)
Q Consensus 7 PpGfRF~P-TDeELV~~YL~~Ki~G~pl~ 34 (265)
|.|+.|.. |++||-. ||..++....+.
T Consensus 37 ~~~~~~~~it~~eL~~-fL~~~v~e~kL~ 64 (74)
T 1ldd_A 37 PKDWGYNRITLQQLEG-YLNTLADEGRLK 64 (74)
T ss_dssp CGGGCCTTCCHHHHHH-HHHHHHHTTSEE
T ss_pred CCCCCCCcCCHHHHHH-HHHHHHhCCeEE
Confidence 67899998 9999987 899999876543
No 5
>3nr5_A MAF1, repressor of RNA polymerase III transcription MAF; RNA-POL III transcriptional repressor, RNA-POL III; 1.55A {Homo sapiens}
Probab=15.53 E-value=44 Score=27.64 Aligned_cols=12 Identities=33% Similarity=0.614 Sum_probs=10.5
Q ss_pred eeeccCCCCCCC
Q 036998 38 IPEIDLYKHEPW 49 (265)
Q Consensus 38 I~e~DVY~~~Pw 49 (265)
+.++|||.+.|.
T Consensus 119 l~dC~IYsY~Pd 130 (164)
T 3nr5_A 119 LAECDIYSYNPD 130 (164)
T ss_dssp GGGCEEEEECCC
T ss_pred ccCCeEEEEcCC
Confidence 568999999997
No 6
>4dox_A Coat protein; all helix capsid protein, virus capsid structure, viral PROT; 2.70A {Papaya mosaic virus}
Probab=11.44 E-value=91 Score=27.06 Aligned_cols=21 Identities=29% Similarity=0.501 Sum_probs=15.4
Q ss_pred CCceECCChHHHHHHHHHHHH
Q 036998 8 PGFRFHPTDEELVAYYLDRKI 28 (265)
Q Consensus 8 pGfRF~PTDeELV~~YL~~Ki 28 (265)
-|..+.||++|+|.|=..+++
T Consensus 157 ~GLiR~PT~~E~iA~~t~K~i 177 (226)
T 4dox_A 157 SGLTRSPTQEERIANATNKQV 177 (226)
T ss_dssp TCCSSCCCHHHHHHHHTC---
T ss_pred CCCCCCCCHHHHHHHHHHHHH
Confidence 389999999999998554443
No 7
>2oh5_A Polyhedrin, C-polyhedrin; beta barrel, intracellular crystal, nucleotide binding, STRU protein, RNA binding protein; HET: GTP ATP CTP; 1.98A {Bombyx mori cypovirus 1} PDB: 2oh6_A* 2oh7_A*
Probab=10.47 E-value=1.4e+02 Score=24.90 Aligned_cols=27 Identities=26% Similarity=0.458 Sum_probs=22.0
Q ss_pred ceeeecCCC-eEEecCccceeeEEEEEe
Q 036998 87 GYWKATGKD-RTVHSHKQSVGMKKTLVY 113 (265)
Q Consensus 87 G~Wk~~G~~-k~I~~~~~~VG~KrtL~F 113 (265)
--|.++|-. +.|..+|++||+...|..
T Consensus 141 hpweatgikyrki~~dgeivgyshyfel 168 (248)
T 2oh5_A 141 HPWEATGIKYRKIKRDGEIVGYSHYFEL 168 (248)
T ss_dssp CSCBCCGGGCEEEEETTEEEEEEEEEEC
T ss_pred CCccccCceEEEeeecceEeeeeeeeec
Confidence 469998855 678889999999887765
No 8
>3fyr_A Sporulation inhibitor SDA; helical hairpin, histidine kinase inhibitor, sporulation regulation, alternative initiation; 1.97A {Bacillus subtilis} SCOP: a.2.12.1 PDB: 1pv0_A 3d36_C*
Probab=10.19 E-value=1.3e+02 Score=19.89 Aligned_cols=23 Identities=22% Similarity=0.283 Sum_probs=16.7
Q ss_pred CChHHHHHHHHHHHHcCCCCCCCce
Q 036998 14 PTDEELVAYYLDRKINGRTIELEII 38 (265)
Q Consensus 14 PTDeELV~~YL~~Ki~G~pl~~~~I 38 (265)
=+|+.||..|.+.+-.+. ..+||
T Consensus 6 LSDe~LiesY~~A~el~L--~~dFI 28 (48)
T 3fyr_A 6 LSDELLIESYFKATEMNL--NRDFI 28 (48)
T ss_dssp SCHHHHHHHHHHHHHTTC--CHHHH
T ss_pred hcHHHHHHHHHHHHHhCC--CHHHH
Confidence 379999999988777663 34454
No 9
>3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A
Probab=9.61 E-value=1.4e+02 Score=26.49 Aligned_cols=21 Identities=19% Similarity=0.613 Sum_probs=14.9
Q ss_pred CCCCCce--ECCChHHHHHHHHH
Q 036998 5 SLPPGFR--FHPTDEELVAYYLD 25 (265)
Q Consensus 5 ~LPpGfR--F~PTDeELV~~YL~ 25 (265)
-+||=|- |.||+++|+.||-.
T Consensus 109 v~~Pyy~~~~~~s~~~l~~~f~~ 131 (309)
T 3fkr_A 109 AMPPYHGATFRVPEAQIFEFYAR 131 (309)
T ss_dssp ECCSCBTTTBCCCHHHHHHHHHH
T ss_pred EcCCCCccCCCCCHHHHHHHHHH
Confidence 3566332 78999999997643
No 10
>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum}
Probab=9.44 E-value=1e+02 Score=27.19 Aligned_cols=18 Identities=28% Similarity=0.558 Sum_probs=14.2
Q ss_pred CCCCceECCChHHHHHHHH
Q 036998 6 LPPGFRFHPTDEELVAYYL 24 (265)
Q Consensus 6 LPpGfRF~PTDeELV~~YL 24 (265)
+|| |.|.|++++|+.||-
T Consensus 118 ~~P-~y~~~~~~~l~~~f~ 135 (304)
T 3cpr_A 118 VTP-YYSKPSQEGLLAHFG 135 (304)
T ss_dssp ECC-CSSCCCHHHHHHHHH
T ss_pred CCC-CCCCCCHHHHHHHHH
Confidence 466 448899999999874
Done!