BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 036999
         (273 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4DI8|A Chain A, Crystal Structure Of The D248a Mutant Of
           2-pyrone-4,6-dicarboxylic Acid Hydrolase From
           Sphingomonas Paucimobilis Complexed With Substrate At Ph
           8.5
 pdb|4DI8|B Chain B, Crystal Structure Of The D248a Mutant Of
           2-pyrone-4,6-dicarboxylic Acid Hydrolase From
           Sphingomonas Paucimobilis Complexed With Substrate At Ph
           8.5
 pdb|4DI9|A Chain A, Crystal Structure Of The D248a Mutant Of
           2-pyrone-4,6-dicarboxylic Acid Hydrolase From
           Sphingomonas Paucimobilis Complexed With Substrate At Ph
           6.5
          Length = 303

 Score = 32.7 bits (73), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 3/67 (4%)

Query: 80  VKGFPRPLLDLSAGSFAKVIDKAFGKPLNPPFDPYANSINYLIASYLIPYVGLTGYVGAN 139
           +K F R LLD     + K        P  PP+D +A S+  L+A Y    +  T +   +
Sbjct: 195 MKAFRR-LLDSREDIWFKATCPDRLDPAGPPWDDFARSVAPLVADYADRVIWGTAW--PH 251

Query: 140 PNLQNAI 146
           PN+Q+AI
Sbjct: 252 PNMQDAI 258


>pdb|4DIA|A Chain A, Crystal Structure Of The D248n Mutant Of
           2-pyrone-4,6-dicarboxylic Acid Hydrolase From
           Sphingomonas Paucimobilis Complexed With Substrate At Ph
           4.6
          Length = 303

 Score = 32.3 bits (72), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 3/67 (4%)

Query: 80  VKGFPRPLLDLSAGSFAKVIDKAFGKPLNPPFDPYANSINYLIASYLIPYVGLTGYVGAN 139
           +K F R LLD     + K        P  PP+D +A S+  L+A Y    +  T +   +
Sbjct: 195 MKAFRR-LLDSREDIWFKATCPDRLDPAGPPWDDFARSVAPLVADYADRVIWGTNW--PH 251

Query: 140 PNLQNAI 146
           PN+Q+AI
Sbjct: 252 PNMQDAI 258


>pdb|4D8L|A Chain A, Crystal Structure Of The 2-pyrone-4,6-dicarboxylic Acid
           Hydrolase From Sphingomonas Paucimobilis
          Length = 303

 Score = 32.3 bits (72), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 3/67 (4%)

Query: 80  VKGFPRPLLDLSAGSFAKVIDKAFGKPLNPPFDPYANSINYLIASYLIPYVGLTGYVGAN 139
           +K F R LLD     + K        P  PP+D +A S+  L+A Y    +  T +   +
Sbjct: 195 MKAFRR-LLDSREDIWFKATCPDRLDPAGPPWDDFARSVAPLVADYADRVIWGTDW--PH 251

Query: 140 PNLQNAI 146
           PN+Q+AI
Sbjct: 252 PNMQDAI 258


>pdb|3AIU|A Chain A, Crystal Structure Of Beta-Glucosidase In Rye
 pdb|3AIV|A Chain A, Crystal Structure Of Beta-Glucosidase In Rye Complexed
           With An Aglycone Dimboa
 pdb|3AIW|A Chain A, Crystal Structure Of Beta-Glucosidase In Rye Complexed
           With 2-Deoxy-2- Fluoroglucoside And Dinitrophenol
          Length = 564

 Score = 29.6 bits (65), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 14/42 (33%), Positives = 23/42 (54%)

Query: 94  SFAKVIDKAFGKPLNPPFDPYANSINYLIASYLIPYVGLTGY 135
           S+++++    GKP     D Y N IN LI   ++PYV +  +
Sbjct: 150 SWSRILPNGTGKPNQKGIDYYNNLINSLIRHGIVPYVTIWHW 191


>pdb|2OH3|A Chain A, Crystal Structure Of Cog1633: Uncharacterized Conserved
           Protein (Zp_00055496.1) From Magnetospirillum
           Magnetotacticum Ms-1 At 2.00 A Resolution
          Length = 167

 Score = 29.3 bits (64), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 1/47 (2%)

Query: 55  DPLTKDLVLQFAWQEVGHLKAIKKTVKGFPRPLLDLSAGSF-AKVID 100
           DP  K L   FA +E  H+ A+ K ++  PRP +  S  +  A+ +D
Sbjct: 121 DPEVKRLGADFAAEEAEHVVALDKWIEKTPRPSITWSEDADPAQCVD 167


>pdb|1BWL|A Chain A, Old Yellow Enzyme (Oye1) Double Mutant H191n:n194h
          Length = 399

 Score = 28.1 bits (61), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 40/91 (43%), Gaps = 15/91 (16%)

Query: 29  GYGLDKVAPNLTLGGPAPLGAKKAN--LDPLTKDLVLQFAWQEVGHLKAIKKTVKGFPRP 86
           G   D  + N+ +       AKKAN     LTKD + Q+          IK+ V+     
Sbjct: 131 GLRYDSASDNVFMDAEQEAKAKKANNPQHSLTKDEIKQY----------IKEYVQAAKN- 179

Query: 87  LLDLSAGSFAKVIDKAFGKPLNPPFDPYANS 117
              ++AG+    I+ A G  LN   DP++N+
Sbjct: 180 --SIAAGADGVEINSAHGYLLNQFLDPHSNT 208


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.316    0.140    0.409 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,200,700
Number of Sequences: 62578
Number of extensions: 416188
Number of successful extensions: 889
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 886
Number of HSP's gapped (non-prelim): 13
length of query: 273
length of database: 14,973,337
effective HSP length: 97
effective length of query: 176
effective length of database: 8,903,271
effective search space: 1566975696
effective search space used: 1566975696
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)