BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 036999
         (273 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P22242|DRPE_CRAPL Desiccation-related protein PCC13-62 OS=Craterostigma plantagineum
           PE=2 SV=1
          Length = 313

 Score =  353 bits (907), Expect = 6e-97,   Method: Compositional matrix adjust.
 Identities = 167/265 (63%), Positives = 207/265 (78%)

Query: 1   LPQSDVDLLEFPLNLEYLEAEFFLFGSLGYGLDKVAPNLTLGGPAPLGAKKANLDPLTKD 60
           +P+SDV LLEFPLNLE LEAEFF + + G G+D++ P L  GGP+P+G +KANL P  +D
Sbjct: 35  IPKSDVSLLEFPLNLELLEAEFFAWAAFGKGIDELEPELAKGGPSPIGVQKANLSPFIRD 94

Query: 61  LVLQFAWQEVGHLKAIKKTVKGFPRPLLDLSAGSFAKVIDKAFGKPLNPPFDPYANSINY 120
           ++ QFA+QE GH++AI+ +V+GFPRPLLDLSA SFA V+D AFGK L PPFDPYAN INY
Sbjct: 95  IIAQFAYQEFGHVRAIQSSVEGFPRPLLDLSAKSFATVMDSAFGKTLKPPFDPYANDINY 154

Query: 121 LIASYLIPYVGLTGYVGANPNLQNAISKRLVAGLLGVESGQDAVIRAFLYEKANEKVHPY 180
           L+A Y++PYVGLTGYVGANP L++ +S++LVAGLL VE+GQDA+IRA LYE+A +KV PY
Sbjct: 155 LLACYVVPYVGLTGYVGANPKLESPVSRKLVAGLLAVEAGQDAIIRALLYERATDKVEPY 214

Query: 181 GIRVAEFTNKISQLRNTLGRSGIKDEGLVVPKALGAEGKIEGNVLAGDENSVAYDRTPEE 240
           GI VAEFTNKIS+LRN LG  G+KD GL+V   LGAEGKI GNVLAGD+NS+A+ RTPE 
Sbjct: 215 GITVAEFTNKISELRNKLGDKGVKDLGLIVEPELGAEGKISGNVLAGDKNSLAFPRTPER 274

Query: 241 VLRIVYGSGNERVPGGFYPKGGDGR 265
            L     +     P  F PK   G+
Sbjct: 275 CLGSCTAAAMRPSPAAFIPKAPTGK 299


>sp|Q8BYH8|CHD9_MOUSE Chromodomain-helicase-DNA-binding protein 9 OS=Mus musculus GN=Chd9
            PE=1 SV=2
          Length = 2885

 Score = 33.5 bits (75), Expect = 1.6,   Method: Composition-based stats.
 Identities = 18/42 (42%), Positives = 26/42 (61%)

Query: 119  NYLIASYLIPYVGLTGYVGANPNLQNAISKRLVAGLLGVESG 160
            N L+A+ L+P V LT       NLQN  S ++ AGL+G+ +G
Sbjct: 2645 NPLLANGLLPGVDLTALQALQQNLQNLQSLQVTAGLMGMPAG 2686


>sp|Q3L8U1|CHD9_HUMAN Chromodomain-helicase-DNA-binding protein 9 OS=Homo sapiens GN=CHD9
            PE=1 SV=2
          Length = 2897

 Score = 33.5 bits (75), Expect = 1.8,   Method: Composition-based stats.
 Identities = 19/44 (43%), Positives = 27/44 (61%)

Query: 117  SINYLIASYLIPYVGLTGYVGANPNLQNAISKRLVAGLLGVESG 160
            S N L+A+ L+P V LT       NLQN  S ++ AGL+G+ +G
Sbjct: 2654 SGNPLLANGLLPGVDLTTLQALQQNLQNLQSLQVTAGLMGMPTG 2697


>sp|P25502|PUT3_YEAST Proline utilization trans-activator OS=Saccharomyces cerevisiae
           (strain ATCC 204508 / S288c) GN=PUT3 PE=1 SV=1
          Length = 979

 Score = 32.3 bits (72), Expect = 3.8,   Method: Composition-based stats.
 Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 2/69 (2%)

Query: 100 DKAFGKPLNPPFDPYANSINYLIASY--LIPYVGLTGYVGANPNLQNAISKRLVAGLLGV 157
           +K     LNP    + NS NYL +SY  L P   +      N NL   + K ++      
Sbjct: 263 NKILNSNLNPAISSFINSNNYLFSSYNFLNPISTIVNLNSINDNLSPLMFKIILKSDTDG 322

Query: 158 ESGQDAVIR 166
            SGQ+ VI+
Sbjct: 323 SSGQEEVIQ 331


>sp|Q8U483|ARLY_PYRFU Argininosuccinate lyase OS=Pyrococcus furiosus (strain ATCC 43587 /
           DSM 3638 / JCM 8422 / Vc1) GN=argH PE=3 SV=1
          Length = 459

 Score = 31.6 bits (70), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 19/74 (25%), Positives = 37/74 (50%), Gaps = 4/74 (5%)

Query: 11  FPLNLEYLEAEFFLFGSLGYGLDKVAPNLTLGGPAPLGAKKANLDPLTKDLVLQFAWQEV 70
             + L  +  +F +F +  +G  K+ PN  L   + +  KK   +P+T ++   +A + +
Sbjct: 238 ISIALSRIAEDFVIFSTPNFGYIKL-PNEHLSTSSMMPQKK---NPVTMEVARAWAGEAI 293

Query: 71  GHLKAIKKTVKGFP 84
           GHL A+   +K  P
Sbjct: 294 GHLVAMMSILKALP 307


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.316    0.140    0.409 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 115,195,453
Number of Sequences: 539616
Number of extensions: 5327291
Number of successful extensions: 11888
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 11881
Number of HSP's gapped (non-prelim): 15
length of query: 273
length of database: 191,569,459
effective HSP length: 116
effective length of query: 157
effective length of database: 128,974,003
effective search space: 20248918471
effective search space used: 20248918471
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)