Query 036999
Match_columns 273
No_of_seqs 183 out of 348
Neff 5.1
Searched_HMMs 46136
Date Fri Mar 29 07:33:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036999.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036999hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF13668 Ferritin_2: Ferritin- 100.0 8.4E-34 1.8E-38 234.2 13.0 134 4-171 1-137 (137)
2 cd01045 Ferritin_like_AB Uncha 98.5 8.2E-07 1.8E-11 70.8 10.2 134 7-168 1-138 (139)
3 cd00657 Ferritin_like Ferritin 98.5 5.2E-06 1.1E-10 63.1 12.3 129 7-169 1-130 (130)
4 PF02915 Rubrerythrin: Rubrery 97.8 0.00013 2.8E-09 58.2 8.9 127 7-168 1-136 (137)
5 cd01048 Ferritin_like_AB2 Unch 97.7 0.00041 8.9E-09 58.0 9.6 124 6-162 2-128 (135)
6 COG1633 Uncharacterized conser 97.0 0.016 3.4E-07 51.0 12.5 143 4-172 24-169 (176)
7 cd07908 Mn_catalase_like Manga 96.9 0.016 3.5E-07 48.7 10.9 105 55-169 46-154 (154)
8 PRK13456 DNA protection protei 96.7 0.026 5.6E-07 50.4 11.5 141 6-174 22-167 (186)
9 PRK12775 putative trifunctiona 96.7 0.022 4.8E-07 61.9 13.2 140 4-175 860-1001(1006)
10 cd01044 Ferritin_CCC1_N Ferrit 96.3 0.13 2.7E-06 42.1 12.1 121 8-170 2-124 (125)
11 cd00907 Bacterioferritin Bacte 95.6 0.45 9.7E-06 39.3 12.8 130 6-172 7-140 (153)
12 cd01052 DPSL DPS-like protein, 95.5 0.46 1E-05 39.0 12.6 138 6-169 8-148 (148)
13 PF13668 Ferritin_2: Ferritin- 94.5 0.13 2.8E-06 42.2 6.6 55 4-81 82-136 (137)
14 cd01051 Mn_catalase Manganese 94.2 0.62 1.4E-05 40.1 10.4 98 55-171 52-154 (156)
15 cd07908 Mn_catalase_like Manga 93.8 0.22 4.7E-06 41.8 6.8 54 4-80 101-154 (154)
16 cd01045 Ferritin_like_AB Uncha 93.7 0.24 5.2E-06 39.1 6.5 54 3-79 85-138 (139)
17 PRK10635 bacterioferritin; Pro 93.6 2 4.4E-05 37.0 12.5 128 6-173 8-142 (158)
18 cd01041 Rubrerythrin Rubreryth 90.0 6.7 0.00014 32.1 11.1 125 6-171 3-132 (134)
19 PF02915 Rubrerythrin: Rubrery 89.4 1 2.2E-05 35.6 5.7 52 5-79 85-136 (137)
20 TIGR02284 conserved hypothetic 89.4 4.5 9.8E-05 34.0 9.8 135 6-168 2-138 (139)
21 cd00657 Ferritin_like Ferritin 87.4 2.6 5.7E-05 31.4 6.6 54 4-80 77-130 (130)
22 cd01046 Rubrerythrin_like rubr 83.9 20 0.00043 29.2 10.6 115 7-171 4-121 (123)
23 TIGR00754 bfr bacterioferritin 82.6 28 0.0006 29.2 13.2 130 6-172 8-141 (157)
24 PF14530 DUF4439: Domain of un 82.3 5.1 0.00011 33.8 6.5 98 52-170 21-124 (131)
25 PRK12775 putative trifunctiona 80.4 4.4 9.4E-05 44.5 6.9 55 4-81 941-996 (1006)
26 cd01041 Rubrerythrin Rubreryth 78.9 4.8 0.0001 33.0 5.3 57 5-81 74-131 (134)
27 COG2406 Protein distantly rela 78.1 11 0.00023 33.1 7.2 107 57-175 50-165 (172)
28 cd01055 Nonheme_Ferritin nonhe 77.7 39 0.00084 28.0 12.6 129 6-170 5-137 (156)
29 PF09968 DUF2202: Uncharacteri 77.3 50 0.0011 29.0 13.2 149 6-191 2-159 (162)
30 cd01042 DMQH Demethoxyubiquino 76.1 9.4 0.0002 33.5 6.5 105 55-167 28-136 (165)
31 cd01048 Ferritin_like_AB2 Unch 69.5 17 0.00037 30.2 6.3 54 2-78 80-133 (135)
32 PF00210 Ferritin: Ferritin-li 69.4 53 0.0011 25.8 11.4 132 6-171 1-138 (142)
33 PF03232 COQ7: Ubiquinone bios 68.2 11 0.00024 33.1 5.2 33 55-87 31-64 (172)
34 PF11272 DUF3072: Protein of u 65.2 17 0.00038 26.7 4.8 39 159-199 18-56 (57)
35 COG1633 Uncharacterized conser 64.2 23 0.0005 31.2 6.4 56 3-81 112-167 (176)
36 cd01046 Rubrerythrin_like rubr 62.3 22 0.00047 29.0 5.5 58 4-81 63-120 (123)
37 PRK13654 magnesium-protoporphy 60.6 12 0.00026 36.5 4.3 55 118-172 85-141 (355)
38 cd01047 ACSF Aerobic Cyclase S 59.0 13 0.00028 36.0 4.0 55 118-172 65-121 (323)
39 PRK10635 bacterioferritin; Pro 55.9 42 0.00091 28.9 6.4 56 6-81 84-139 (158)
40 cd00907 Bacterioferritin Bacte 55.8 37 0.0008 27.8 5.9 58 4-81 81-138 (153)
41 PF09537 DUF2383: Domain of un 53.7 55 0.0012 25.6 6.4 104 6-138 3-108 (111)
42 CHL00185 ycf59 magnesium-proto 52.9 18 0.00039 35.3 4.0 55 118-172 81-137 (351)
43 TIGR02029 AcsF magnesium-proto 52.5 18 0.00039 35.1 3.9 55 118-172 75-131 (337)
44 PLN02508 magnesium-protoporphy 51.2 17 0.00037 35.5 3.6 55 118-172 81-137 (357)
45 cd01055 Nonheme_Ferritin nonhe 47.8 46 0.00099 27.5 5.3 57 5-81 81-137 (156)
46 PF00210 Ferritin: Ferritin-li 47.0 58 0.0013 25.5 5.6 58 4-81 80-137 (142)
47 cd01051 Mn_catalase Manganese 43.7 91 0.002 26.8 6.6 53 6-81 101-153 (156)
48 PF03232 COQ7: Ubiquinone bios 42.0 60 0.0013 28.6 5.3 51 123-173 9-60 (172)
49 PF04305 DUF455: Protein of un 41.8 45 0.00097 31.1 4.7 57 55-112 180-237 (253)
50 cd01044 Ferritin_CCC1_N Ferrit 41.8 48 0.001 26.8 4.4 55 121-175 3-57 (125)
51 PF11220 DUF3015: Protein of u 39.7 62 0.0014 27.9 4.9 65 123-193 67-131 (144)
52 COG2941 CAT5 Ubiquinone biosyn 38.3 58 0.0012 29.6 4.6 33 55-87 69-102 (204)
53 PF12902 Ferritin-like: Ferrit 38.2 1.2E+02 0.0026 27.7 6.8 61 9-89 1-62 (227)
54 PF11583 AurF: P-aminobenzoate 34.7 39 0.00085 31.3 3.2 111 54-174 110-229 (304)
55 PF11553 DUF3231: Protein of u 34.0 2.9E+02 0.0063 23.3 8.9 87 55-158 45-137 (166)
56 PF01786 AOX: Alternative oxid 33.6 68 0.0015 29.2 4.4 56 15-75 139-201 (207)
57 cd01050 Acyl_ACP_Desat Acyl AC 32.2 4.6E+02 0.01 25.1 10.4 106 57-172 94-205 (297)
58 TIGR00754 bfr bacterioferritin 31.2 1.3E+02 0.0028 25.1 5.6 56 6-81 84-139 (157)
59 COG1867 TRM1 N2,N2-dimethylgua 30.4 34 0.00074 33.9 2.1 63 110-173 126-195 (380)
60 COG2193 Bfr Bacterioferritin ( 29.4 1E+02 0.0022 27.1 4.6 58 4-81 82-139 (157)
61 PF13628 DUF4142: Domain of un 28.9 3.2E+02 0.0069 22.2 8.4 107 54-167 29-138 (139)
62 COG3546 Mn-containing catalase 28.6 5.3E+02 0.011 24.7 9.9 115 56-175 52-192 (277)
63 cd07910 MiaE MiaE tRNA-modifyi 28.5 4.4E+02 0.0094 23.7 11.7 110 56-173 48-159 (180)
64 PRK13456 DNA protection protei 28.0 1.9E+02 0.0041 26.1 6.2 56 6-82 109-164 (186)
65 PF05974 DUF892: Domain of unk 26.3 1.1E+02 0.0025 26.0 4.4 112 55-169 33-150 (159)
66 cd01052 DPSL DPS-like protein, 25.3 2.8E+02 0.0061 22.3 6.5 56 4-80 93-148 (148)
67 TIGR02284 conserved hypothetic 22.8 2.8E+02 0.0061 23.1 6.1 79 128-209 12-90 (139)
68 COG4902 Uncharacterized protei 21.8 83 0.0018 27.8 2.7 36 56-91 74-111 (189)
69 cd01042 DMQH Demethoxyubiquino 21.6 1.3E+02 0.0029 26.3 4.0 46 128-173 12-57 (165)
70 KOG4061 DMQ mono-oxygenase/Ubi 21.2 5.8E+02 0.013 23.3 7.9 102 58-208 79-186 (217)
No 1
>PF13668 Ferritin_2: Ferritin-like domain
Probab=100.00 E-value=8.4e-34 Score=234.21 Aligned_cols=134 Identities=39% Similarity=0.694 Sum_probs=125.2
Q ss_pred ccchhhhhHHhHHHHHHHHHHhhhhCCCccccCCcccCCCCCCccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhh-c-
Q 036999 4 SDVDLLEFPLNLEYLEAEFFLFGSLGYGLDKVAPNLTLGGPAPLGAKKANLDPLTKDLVLQFAWQEVGHLKAIKKTV-K- 81 (273)
Q Consensus 4 ~D~diLNFALnLEyLEa~FY~~a~~g~gl~~~~~~l~~ggp~~~g~~~a~l~~~v~~~~~eia~~E~~HV~~L~~aL-g- 81 (273)
+|++||||||+|||||.+||.+++.+++.++ . +..+++.+++++++|+.||..|+++|+++| |
T Consensus 1 ~D~~iL~~Al~lE~l~~~fY~~~~~~~~~~~-~--------------~~~~~~~~~~~~~~i~~~E~~H~~~l~~~l~g~ 65 (137)
T PF13668_consen 1 GDLDILNFALNLEYLEADFYQQAAEGFTLQD-N--------------KAALDPEVRDLFQEIADQEQGHVDFLQAALEGG 65 (137)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhcCChhh-h--------------hccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 6999999999999999999999998887664 1 356789999999999999999999999999 6
Q ss_pred -CCCCccccCCcchHHHHHHHhcCCCCCCCCCCCCChHHHHHHHhhcchhhHHhhccccccCCChhHHHHHHhHHHhhhh
Q 036999 82 -GFPRPLLDLSAGSFAKVIDKAFGKPLNPPFDPYANSINYLIASYLIPYVGLTGYVGANPNLQNAISKRLVAGLLGVESG 160 (273)
Q Consensus 82 -av~~P~id~s~~~F~~~~~~A~g~~l~p~FdPy~n~~~FL~~A~~~E~vGvtAY~Gaap~l~~~~~l~~Aa~Il~VEA~ 160 (273)
++++|.||+ +||||+|+.+||..|+.||++|+++|+|++++++|+++++++++|++||++
T Consensus 66 ~~~~~~~~~~-------------------~~~~~~~~~~~L~~A~~~E~~~~~~Y~g~~~~~~~~~~~~~~~~i~~~Ea~ 126 (137)
T PF13668_consen 66 RPVPPPAYDF-------------------PFDPFTDDASFLRLAYTLEDVGVSAYKGAAPQIEDPELKALAASIAGVEAR 126 (137)
T ss_pred CCCCCCcccc-------------------ccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 778898887 489999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHH
Q 036999 161 QDAVIRAFLYE 171 (273)
Q Consensus 161 Haa~IR~lL~~ 171 (273)
|++|||++|+|
T Consensus 127 H~~~ir~ll~~ 137 (137)
T PF13668_consen 127 HAAWIRNLLGQ 137 (137)
T ss_pred HHHHHHHHhcC
Confidence 99999999985
No 2
>cd01045 Ferritin_like_AB Uncharacterized family of ferritin-like proteins found in archaea and bacteria. Ferritin-like domain found in archaea and bacteria (Ferritin_like_AB). This uncharacterized domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins whose function is unknown. This family includes unknown or hypothetical proteins which were sequenced from mostly anaerobic or microaerophilic metal-metabolizing and/or nitrogen-fixing microbes. The family includes sequences from ferric-, sulfate-, and arsenic-reducing bacteria, Geobacter, Magnetospirillum, Desulfovibrio, and Desulfitobacterium. Also included are several nitrogen-fixing endosymbiotic bacteria, Rhizobium, Mesorhizobium, and Bradyrhizobium; also phototrophic purple nonsulfur bacteria, Rhodobacter and Rhodopseudomonas, as well as, obligate thermophiles, Thermotoga, Thermoanaerobacter, and Pyrococcus. The conserved residues of a diiron center are present in this uncharacterized domain.
Probab=98.54 E-value=8.2e-07 Score=70.80 Aligned_cols=134 Identities=18% Similarity=0.232 Sum_probs=103.4
Q ss_pred hhhhhHHhHHHHHHHHHHhhhhCCCccccCCcccCCCCCCccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhcCC---
Q 036999 7 DLLEFPLNLEYLEAEFFLFGSLGYGLDKVAPNLTLGGPAPLGAKKANLDPLTKDLVLQFAWQEVGHLKAIKKTVKGF--- 83 (273)
Q Consensus 7 diLNFALnLEyLEa~FY~~a~~g~gl~~~~~~l~~ggp~~~g~~~a~l~~~v~~~~~eia~~E~~HV~~L~~aLgav--- 83 (273)
+|||.|+.+|.....||...+... -++.++.+++.++.+|..|...|...+...
T Consensus 1 ~~l~~a~~~E~~~~~~Y~~~a~~~-----------------------~~~~~~~~~~~la~eE~~H~~~l~~~~~~~~~~ 57 (139)
T cd01045 1 EILALAIKMEEEAAEFYLELAEKA-----------------------KDPELKKLFEELAEEEKEHAERLEELYEKLFGE 57 (139)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhHC-----------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 589999999999999999986321 145799999999999999999999998722
Q ss_pred CCccccCCcchHHHHHHHhcCCCCC-CCCCCCCChHHHHHHHhhcchhhHHhhccccccCCChhHHHHHHhHHHhhhhhH
Q 036999 84 PRPLLDLSAGSFAKVIDKAFGKPLN-PPFDPYANSINYLIASYLIPYVGLTGYVGANPNLQNAISKRLVAGLLGVESGQD 162 (273)
Q Consensus 84 ~~P~id~s~~~F~~~~~~A~g~~l~-p~FdPy~n~~~FL~~A~~~E~vGvtAY~Gaap~l~~~~~l~~Aa~Il~VEA~Ha 162 (273)
+-|..... .+.... .+.... ..+.+-.+...-|..+.-+|..++.-|.-.+..+.++..+.+...|...|.+|.
T Consensus 58 ~~~~~~~~--~~~~~~---~~~~~~~~~~~~~~~~~~~l~~a~~~E~~~~~~Y~~~~~~~~d~~~~~~~~~l~~~E~~H~ 132 (139)
T cd01045 58 ELPELEPE--DYKEEV---EEEPEFKKALESLMDPLEALRLAIEIEKDAIEFYEELAEKAEDPEVKKLFEELAEEERGHL 132 (139)
T ss_pred cCCcccHH--HHHHHH---hhhhhHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 44544432 121110 010000 011234578889999999999999999999999999999999999999999999
Q ss_pred HHHHHH
Q 036999 163 AVIRAF 168 (273)
Q Consensus 163 a~IR~l 168 (273)
..+|.+
T Consensus 133 ~~l~~~ 138 (139)
T cd01045 133 RLLEEL 138 (139)
T ss_pred HHHHHh
Confidence 999975
No 3
>cd00657 Ferritin_like Ferritin-like superfamily of diiron-containing four-helix-bundle proteins. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterioferritin, ferritin, rubrerythrin, aromatic and alkene monooxygenase hydroxylases (AAMH), ribonucleotide reductase R2 (RNRR2), acyl-ACP-desaturases (Acyl_ACP_Desat), manganese (Mn) catalases, demethoxyub
Probab=98.46 E-value=5.2e-06 Score=63.14 Aligned_cols=129 Identities=22% Similarity=0.159 Sum_probs=99.9
Q ss_pred hhhhhHHhHHHHHHHHHHhhhhCCCccccCCcccCCCCCCccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCC
Q 036999 7 DLLEFPLNLEYLEAEFFLFGSLGYGLDKVAPNLTLGGPAPLGAKKANLDPLTKDLVLQFAWQEVGHLKAIKKTVK-GFPR 85 (273)
Q Consensus 7 diLNFALnLEyLEa~FY~~a~~g~gl~~~~~~l~~ggp~~~g~~~a~l~~~v~~~~~eia~~E~~HV~~L~~aLg-av~~ 85 (273)
.+||-++..|+....+|...... +. ++.++.++.+++.+|..|.+.|.+.+. -...
T Consensus 1 ~~L~~~~~~E~~a~~~y~~~~~~----------------------~~-~~~~~~~~~~~a~~E~~H~~~l~~~~~~~g~~ 57 (130)
T cd00657 1 RLLNDALAGEYAAIIAYGQLAAR----------------------AP-DPDLKDELLEIADEERRHADALAERLRELGGT 57 (130)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHH----------------------cC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 36899999999999999998632 11 578999999999999999999999886 1122
Q ss_pred ccccCCcchHHHHHHHhcCCCCCCCCCCCCChHHHHHHHhhcchhhHHhhccccccCCChhHHHHHHhHHHhhhhhHHHH
Q 036999 86 PLLDLSAGSFAKVIDKAFGKPLNPPFDPYANSINYLIASYLIPYVGLTGYVGANPNLQNAISKRLVAGLLGVESGQDAVI 165 (273)
Q Consensus 86 P~id~s~~~F~~~~~~A~g~~l~p~FdPy~n~~~FL~~A~~~E~vGvtAY~Gaap~l~~~~~l~~Aa~Il~VEA~Haa~I 165 (273)
|..... .+. .. . ++..+..+....|..+...|..++..|...+..+.++..+.....|...|.+|...+
T Consensus 58 ~~~~~~--~~~----~~-~----~~~~~~~~~~~~l~~~~~~E~~~~~~y~~~~~~~~d~~~~~~~~~~~~~E~~H~~~~ 126 (130)
T cd00657 58 PPLPPA--HLL----AA-Y----ALPKTSDDPAEALRAALEVEARAIAAYRELIEQADDPELRRLLERILADEQRHAAWF 126 (130)
T ss_pred CCCCHH--HHH----Hh-c----ccCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHH
Confidence 222111 010 01 1 122334677888999999999999999999999999999999999999999999998
Q ss_pred HHHH
Q 036999 166 RAFL 169 (273)
Q Consensus 166 R~lL 169 (273)
+.++
T Consensus 127 ~~~~ 130 (130)
T cd00657 127 RKLL 130 (130)
T ss_pred HhhC
Confidence 8653
No 4
>PF02915 Rubrerythrin: Rubrerythrin; InterPro: IPR003251 Rubrerythrin (Rr), found in anaerobic sulphate-reducing bacteria [], is a fusion protein containing an N-terminal diiron-binding domain and a C-terminal domain homologous to rubredoxin []. The physiological role of Rr has not been identified. The 3-D structure of Desulphovibrio vulgaris rubrerythrin has been solved []. The structure reveals a tetramer of two-domain subunits. In each monomer, the N-terminal 146 residues form a four-alpha-helix bundle containing the diiron-oxo site (centre I), and the C-terminal 45 residues form a rubredoxin-like FeS4 domain.; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1VJX_A 2FZF_A 3SID_B 3QHC_B 3QHB_B 4DI0_A 1J30_B 1YV1_A 1YUZ_B 1YUX_B ....
Probab=97.83 E-value=0.00013 Score=58.19 Aligned_cols=127 Identities=18% Similarity=0.169 Sum_probs=98.4
Q ss_pred hhhhhHHhHHHHHHHHHHhhhhCCCccccCCcccCCCCCCccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhc-C--C
Q 036999 7 DLLEFPLNLEYLEAEFFLFGSLGYGLDKVAPNLTLGGPAPLGAKKANLDPLTKDLVLQFAWQEVGHLKAIKKTVK-G--F 83 (273)
Q Consensus 7 diLNFALnLEyLEa~FY~~a~~g~gl~~~~~~l~~ggp~~~g~~~a~l~~~v~~~~~eia~~E~~HV~~L~~aLg-a--v 83 (273)
++|+.|+..|.-...||...+... +..+ |.++.++.+++.+|..|.++|.+.+. - .
T Consensus 1 e~L~~A~~~E~~~~~~Y~~~a~~~-------------------~~~~--p~~~~~f~~lA~~E~~H~~~~~~l~~~~~~~ 59 (137)
T PF02915_consen 1 EILEMAIKMELEAAKFYRELAEKA-------------------KDEG--PELKELFRRLAEEEQEHAKFLEKLLRKLGPG 59 (137)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-------------------HHTT--HHHHHHHHHHHHHHHHHHHHHHHHHCHCSTT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHh-------------------hhcc--cHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 689999999999999999986311 1111 78999999999999999999999988 2 2
Q ss_pred CCccccCCcchHHHHHHHhcCCCCCCCCCC------CCChHHHHHHHhhcchhhHHhhccccccCCChhHHHHHHhHHHh
Q 036999 84 PRPLLDLSAGSFAKVIDKAFGKPLNPPFDP------YANSINYLIASYLIPYVGLTGYVGANPNLQNAISKRLVAGLLGV 157 (273)
Q Consensus 84 ~~P~id~s~~~F~~~~~~A~g~~l~p~FdP------y~n~~~FL~~A~~~E~vGvtAY~Gaap~l~~~~~l~~Aa~Il~V 157 (273)
..|.+.-. ...+.+.+ -.|....+..+...|.-++.-|.-.+..+.++..+...-.|...
T Consensus 60 ~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~l~~a~~~E~~~~~~Y~~~a~~~~~~~~~~~~~~l~~~ 125 (137)
T PF02915_consen 60 EEPPFLEE--------------KVEYSFFPKLEEETDENLEEALEMAIKEEKDAYEFYAELARKAPDPEIRKLFEELAKE 125 (137)
T ss_dssp HHTHCHCC--------------CCCHCCCCTCCSSHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred cCcchhhh--------------hhhhhhcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 22321100 01111222 12466788889999999999999999999999999999999999
Q ss_pred hhhhHHHHHHH
Q 036999 158 ESGQDAVIRAF 168 (273)
Q Consensus 158 EA~Haa~IR~l 168 (273)
|.+|...++.+
T Consensus 126 E~~H~~~l~~l 136 (137)
T PF02915_consen 126 EKEHEDLLEKL 136 (137)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999998865
No 5
>cd01048 Ferritin_like_AB2 Uncharacterized family of ferritin-like proteins found in archaea and bacteria. Ferritin-like domain found in archaea and bacteria, subgroup 2 (Ferritin_like_AB2). This uncharacterized domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins whose function is unknown. The conserved residues of a diiron center are present within the putative active site.
Probab=97.65 E-value=0.00041 Score=58.03 Aligned_cols=124 Identities=19% Similarity=0.233 Sum_probs=97.8
Q ss_pred chhhhhHHhHHHHHHHHHHhhhhCCCccccCCcccCCCCCCccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhc--CC
Q 036999 6 VDLLEFPLNLEYLEAEFFLFGSLGYGLDKVAPNLTLGGPAPLGAKKANLDPLTKDLVLQFAWQEVGHLKAIKKTVK--GF 83 (273)
Q Consensus 6 ~diLNFALnLEyLEa~FY~~a~~g~gl~~~~~~l~~ggp~~~g~~~a~l~~~v~~~~~eia~~E~~HV~~L~~aLg--av 83 (273)
.++|.||+..|++.-+||......+| .+.++..|+..|+.|...|+..+. .+
T Consensus 2 ~~~L~~Ale~Ek~a~~~Y~~~~~k~~--------------------------~~~~F~~la~~E~~H~~~l~~L~~~~~~ 55 (135)
T cd01048 2 IAALLYALEEEKLARDVYLALYEKFG--------------------------GLRPFSNIAESEQRHMDALKTLLERYGL 55 (135)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhc--------------------------CcchHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 57899999999999999999875432 246788899999999999999998 88
Q ss_pred CCccccCCcchHHHHH-HHhcCCCCCCCCCCCCChHHHHHHHhhcchhhHHhhccccccCCChhHHHHHHhHHHhhhhhH
Q 036999 84 PRPLLDLSAGSFAKVI-DKAFGKPLNPPFDPYANSINYLIASYLIPYVGLTGYVGANPNLQNAISKRLVAGLLGVESGQD 162 (273)
Q Consensus 84 ~~P~id~s~~~F~~~~-~~A~g~~l~p~FdPy~n~~~FL~~A~~~E~vGvtAY~Gaap~l~~~~~l~~Aa~Il~VEA~Ha 162 (273)
+.|..+...+.|...- +... ...-.+..+-|..+..+|...+.=|.-++...+|++++..--.+...|-.|-
T Consensus 56 ~~p~~~~~~~~f~~~~~~~l~-------~~~~~s~~~al~~g~~~E~~~i~~ye~~~~~~~d~d~k~v~~~L~~~e~~H~ 128 (135)
T cd01048 56 PDPVDPFSGGVFTNPQYNQLV-------EQGPKSLQDALEVGVLIEELDIADYDRLLERTQNPDIRDVFENLQAASRNHH 128 (135)
T ss_pred CCCCCccccccccchhHHHHH-------HhccccHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence 8887766544443110 0000 0123477888999999999999999999999999999999888888888774
No 6
>COG1633 Uncharacterized conserved protein [Function unknown]
Probab=97.01 E-value=0.016 Score=51.03 Aligned_cols=143 Identities=16% Similarity=0.125 Sum_probs=103.2
Q ss_pred ccchhhhhHHhHHHHHHHHHHhhhhCCCccccCCcccCCCCCCccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhc-C
Q 036999 4 SDVDLLEFPLNLEYLEAEFFLFGSLGYGLDKVAPNLTLGGPAPLGAKKANLDPLTKDLVLQFAWQEVGHLKAIKKTVK-G 82 (273)
Q Consensus 4 ~D~diLNFALnLEyLEa~FY~~a~~g~gl~~~~~~l~~ggp~~~g~~~a~l~~~v~~~~~eia~~E~~HV~~L~~aLg-a 82 (273)
+-.++|++|+..|.=.-.||.+.+.. --++.++.++.+|+.+|..|.+-+++.+. -
T Consensus 24 ~~~e~L~~Ai~~E~eA~~fY~~lae~-----------------------~~~~~~rk~~~~la~eE~~H~~~f~~l~~~~ 80 (176)
T COG1633 24 SIEELLAIAIRGELEAIKFYEELAER-----------------------IEDEEIRKLFEDLADEEMRHLRKFEKLLEKL 80 (176)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHh-----------------------cCCHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44789999999999999999998632 12578999999999999999999998887 4
Q ss_pred CCCccccCCcchHHHHHHHhcCCCCCC--CCCCCCChHHHHHHHhhcchhhHHhhccccccCCChhHHHHHHhHHHhhhh
Q 036999 83 FPRPLLDLSAGSFAKVIDKAFGKPLNP--PFDPYANSINYLIASYLIPYVGLTGYVGANPNLQNAISKRLVAGLLGVESG 160 (273)
Q Consensus 83 v~~P~id~s~~~F~~~~~~A~g~~l~p--~FdPy~n~~~FL~~A~~~E~vGvtAY~Gaap~l~~~~~l~~Aa~Il~VEA~ 160 (273)
.++|.-......+. .........| .++.=.+...=+..|.--|--.+--|...+-.+.|.+...+.-.|...|-+
T Consensus 81 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~I~~a~~~E~~t~~~Y~~~~~~~~~~~~~~~~~~~a~~E~~ 157 (176)
T COG1633 81 TPKEVSSEEEEGEI---ESEILEYLQPGKEMEKSVSYLEAIEAAMEAEKDTIEFYEELLDELVNEEAKKLFKTIADDEKG 157 (176)
T ss_pred cCCccchhhhhcch---hhhhccccCcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 44442111110000 0000111111 133333444555667777999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHh
Q 036999 161 QDAVIRAFLYEK 172 (273)
Q Consensus 161 Haa~IR~lL~~~ 172 (273)
|..+++..+...
T Consensus 158 H~~~l~~~~~~~ 169 (176)
T COG1633 158 HASGLLSLYNRL 169 (176)
T ss_pred HHHHHHHHHHHH
Confidence 999999877654
No 7
>cd07908 Mn_catalase_like Manganese catalase-like protein, ferritin-like diiron-binding domain. This uncharacterized bacterial protein family has a ferritin-like domain similar to that of the manganese catalase protein of Lactobacillus plantarum and the bll3758 protein of Bradyrhizobium japonicum. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterio
Probab=96.86 E-value=0.016 Score=48.72 Aligned_cols=105 Identities=15% Similarity=0.149 Sum_probs=79.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhhc---CCCCccccCCcchHHHHHHHhcCCCCCC-CCCCCCChHHHHHHHhhcchh
Q 036999 55 DPLTKDLVLQFAWQEVGHLKAIKKTVK---GFPRPLLDLSAGSFAKVIDKAFGKPLNP-PFDPYANSINYLIASYLIPYV 130 (273)
Q Consensus 55 ~~~v~~~~~eia~~E~~HV~~L~~aLg---av~~P~id~s~~~F~~~~~~A~g~~l~p-~FdPy~n~~~FL~~A~~~E~v 130 (273)
++.+++++.+++.+|..|...|...+. +.|...-. ....| ..+.+ .+.+-.+....|..+..+|.-
T Consensus 46 ~~~~k~~f~~lA~eE~~H~~~l~~~i~~lgg~p~~~~~-~~~~~---------~~~~~~~~~~~~~~~~~L~~~~~~E~~ 115 (154)
T cd07908 46 YPEIAETFLGIAIVEMHHLEILGQLIVLLGGDPRYRSS-SSDKF---------TYWTGKYVNYGESIKEMLKLDIASEKA 115 (154)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhh-ccccC---------CcCCccccCCccCHHHHHHHHHHHHHH
Confidence 588999999999999999999998866 33321111 00011 00111 111224677899999999999
Q ss_pred hHHhhccccccCCChhHHHHHHhHHHhhhhhHHHHHHHH
Q 036999 131 GLTGYVGANPNLQNAISKRLVAGLLGVESGQDAVIRAFL 169 (273)
Q Consensus 131 GvtAY~Gaap~l~~~~~l~~Aa~Il~VEA~Haa~IR~lL 169 (273)
++.-|..++..+.|++.+.+.-.|+.-|-.|..++..+|
T Consensus 116 ai~~Y~~~~~~~~d~~~r~ll~~I~~eE~~H~~~L~~~l 154 (154)
T cd07908 116 AIAKYKRQAETIKDPYIRALLNRIILDEKLHIKILEELL 154 (154)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 999999999999999999999999999999999987764
No 8
>PRK13456 DNA protection protein DPS; Provisional
Probab=96.72 E-value=0.026 Score=50.39 Aligned_cols=141 Identities=14% Similarity=0.094 Sum_probs=99.2
Q ss_pred chhhhhHHhHHHHHHHHHHhhhhCCCccccCCcccCCCCCCccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhh---cC
Q 036999 6 VDLLEFPLNLEYLEAEFFLFGSLGYGLDKVAPNLTLGGPAPLGAKKANLDPLTKDLVLQFAWQEVGHLKAIKKTV---KG 82 (273)
Q Consensus 6 ~diLNFALnLEyLEa~FY~~a~~g~gl~~~~~~l~~ggp~~~g~~~a~l~~~v~~~~~eia~~E~~HV~~L~~aL---ga 82 (273)
+++||=||.-||+-.=.|..... ...|+ ..+.+...+++-+.+|..|...|-.-| |+
T Consensus 22 i~lLn~AlA~E~~a~~~Y~~~a~-----------~~~G~---------~~e~V~e~le~a~~EEl~HA~~lAeRI~qLGG 81 (186)
T PRK13456 22 VELLVKNAAAEFTTYYYYTILRA-----------HLIGL---------EGEGLKEIAEDARLEDRNHFEALVPRIYELGG 81 (186)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----------HHhCc---------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 67899999999988777766542 11111 247788999999999999999998664 43
Q ss_pred CCCccccCCcchHHHHHHHhcCCCCCCCCCCCCChHHHHHHHhhcchhhHHhhccccccCC--ChhHHHHHHhHHHhhhh
Q 036999 83 FPRPLLDLSAGSFAKVIDKAFGKPLNPPFDPYANSINYLIASYLIPYVGLTGYVGANPNLQ--NAISKRLVAGLLGVESG 160 (273)
Q Consensus 83 v~~P~id~s~~~F~~~~~~A~g~~l~p~FdPy~n~~~FL~~A~~~E~vGvtAY~Gaap~l~--~~~~l~~Aa~Il~VEA~ 160 (273)
.| ..|. ..|-.+..... +.+|=| -+|...+|...-.=|...+..|.=....+. |+....++-.||+.|-.
T Consensus 82 ~P--~~~p--~~~~~ls~~~~---~~~p~d-~tdv~~mL~~~L~AEr~AI~~Y~eii~~~~~kDp~T~~l~~~IL~dE~e 153 (186)
T PRK13456 82 KL--PRDI--REFHDISACPD---AYLPEN-PTDPKEILKVLLEAERCAIRTYTEICDMTAGKDPRTYDLALAILQEEIE 153 (186)
T ss_pred CC--CCCh--HHHhhhhcCcc---ccCCCC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHH
Confidence 33 2222 22322221111 011222 136778999998899999999997777664 56678999999999999
Q ss_pred hHHHHHHHHHHhhh
Q 036999 161 QDAVIRAFLYEKAN 174 (273)
Q Consensus 161 Haa~IR~lL~~~~~ 174 (273)
|..++..+|..+++
T Consensus 154 H~~dl~~lL~~~~~ 167 (186)
T PRK13456 154 HEAWFSELLGGGPS 167 (186)
T ss_pred HHHHHHHHHhcCCC
Confidence 99999999997643
No 9
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=96.71 E-value=0.022 Score=61.85 Aligned_cols=140 Identities=14% Similarity=0.140 Sum_probs=107.8
Q ss_pred ccchhhhhHHhHHHHHHHHHHhhhhCCCccccCCcccCCCCCCccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhc-C
Q 036999 4 SDVDLLEFPLNLEYLEAEFFLFGSLGYGLDKVAPNLTLGGPAPLGAKKANLDPLTKDLVLQFAWQEVGHLKAIKKTVK-G 82 (273)
Q Consensus 4 ~D~diLNFALnLEyLEa~FY~~a~~g~gl~~~~~~l~~ggp~~~g~~~a~l~~~v~~~~~eia~~E~~HV~~L~~aLg-a 82 (273)
++.+||.+|+.+|==--+||...+.. + -++.+++++.++|..|..|.+.|++.+. .
T Consensus 860 ~~~eil~~Ai~mE~~g~~FY~~~A~~----------------------a-~~~~~K~lF~~LA~eE~~H~~~l~~~~~~~ 916 (1006)
T PRK12775 860 AALEAIRTAFEIELGGMAFYARAAKE----------------------T-SDPVLKELFLKFAGMEQEHMATLARRYHAA 916 (1006)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHH----------------------c-CCHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 56799999999999889999998732 1 2689999999999999999999988876 3
Q ss_pred CCCccccCCcchHHHHHHHhcCCCCCCCCCCCCChHHHHHHHhhcchhhHHhhccccccCCChh-HHHHHHhHHHhhhhh
Q 036999 83 FPRPLLDLSAGSFAKVIDKAFGKPLNPPFDPYANSINYLIASYLIPYVGLTGYVGANPNLQNAI-SKRLVAGLLGVESGQ 161 (273)
Q Consensus 83 v~~P~id~s~~~F~~~~~~A~g~~l~p~FdPy~n~~~FL~~A~~~E~vGvtAY~Gaap~l~~~~-~l~~Aa~Il~VEA~H 161 (273)
.+.+.-++. .+. ...-..+ +++..++.+.|..|.-+|.=.+.=|..++....+++ .+++...|..-|-.|
T Consensus 917 ~~~~~~~~~--~~~----~~~~~~~---~~~~~~~~~al~lAm~~Ekdai~fY~~la~~~~d~e~~k~l~~~LA~EEk~H 987 (1006)
T PRK12775 917 APSPTEGFK--IER----AAIMAGV---KGRPDDPGNLFRIAIEFERRAVKFFKERVAETPDGSVERQLYKELAAEEREH 987 (1006)
T ss_pred cCCcccccc--cch----hhhhhhh---ccccCCHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHH
Confidence 333221221 010 0000011 122356788999999999999999999999999986 689999999999999
Q ss_pred HHHHHHHHHHhhhc
Q 036999 162 DAVIRAFLYEKANE 175 (273)
Q Consensus 162 aa~IR~lL~~~~~~ 175 (273)
-..+..++.+..+-
T Consensus 988 l~~L~~~~d~~~~~ 1001 (1006)
T PRK12775 988 VALLTTEFERWKQG 1001 (1006)
T ss_pred HHHHHHHHHHHhcc
Confidence 99999988887654
No 10
>cd01044 Ferritin_CCC1_N Ferritin-CCC1, N-terminal ferritin-like diiron-binding domain. Ferritin-like N-terminal domain present in an uncharacterized family of proteins found in bacteria and archaea. These proteins also have a C-terminal CCC1-like transmembrane domain and are thought to be involved in iron and/or manganese transport. This domain has the conserved residues of a diiron center found in other ferritin-like proteins.
Probab=96.25 E-value=0.13 Score=42.08 Aligned_cols=121 Identities=21% Similarity=0.164 Sum_probs=84.4
Q ss_pred hhhhHHhHHHHHHHHHHhhhhCCCccccCCcccCCCCCCccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhc--CCCC
Q 036999 8 LLEFPLNLEYLEAEFFLFGSLGYGLDKVAPNLTLGGPAPLGAKKANLDPLTKDLVLQFAWQEVGHLKAIKKTVK--GFPR 85 (273)
Q Consensus 8 iLNFALnLEyLEa~FY~~a~~g~gl~~~~~~l~~ggp~~~g~~~a~l~~~v~~~~~eia~~E~~HV~~L~~aLg--av~~ 85 (273)
.||=.+.-|.-...||...+.. --++.++.++.++|.+|..|..++++.++ +.+.
T Consensus 2 ~~~~~~~~E~~~~~~Y~~la~~-----------------------~~~~~~k~~f~~lA~~E~~H~~~~~~~~~~~~~~~ 58 (125)
T cd01044 2 RLRKFQKDEITEAAIYRKLAKR-----------------------EKDPENREILLKLAEDERRHAEFWKKFLGKRGVPP 58 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-----------------------cCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC
Confidence 4666788999999999998631 12578999999999999999999999988 3332
Q ss_pred ccccCCcchHHHHHHHhcCCCCCCCCCCCCChHHHHHHHhhcchhhHHhhccccccCCChhHHHHHHhHHHhhhhhHHHH
Q 036999 86 PLLDLSAGSFAKVIDKAFGKPLNPPFDPYANSINYLIASYLIPYVGLTGYVGANPNLQNAISKRLVAGLLGVESGQDAVI 165 (273)
Q Consensus 86 P~id~s~~~F~~~~~~A~g~~l~p~FdPy~n~~~FL~~A~~~E~vGvtAY~Gaap~l~~~~~l~~Aa~Il~VEA~Haa~I 165 (273)
|.-++. ..|.......+ +....+..+.-.|.-++.-|...+.. +.....|..-|-.|-..+
T Consensus 59 ~~~~~~-~~~~~~l~~~~------------g~~~~l~~~~~~E~~ai~~Y~~~~~~------~~~~~~Ii~dE~~H~~~L 119 (125)
T cd01044 59 PRPKLK-IFFYKLLARIF------------GPTFVLKLLERGEERAIEKYDRLLEE------RPELKEIIADELEHEEVL 119 (125)
T ss_pred CCccHH-HHHHHHHHHHH------------hHHHHHHHHHHhHHhhHhhHHhhhhh------hHHHHHHHHHHHHHHHHH
Confidence 200111 11222111111 22345566667888899999887655 556678999999999999
Q ss_pred HHHHH
Q 036999 166 RAFLY 170 (273)
Q Consensus 166 R~lL~ 170 (273)
+.++.
T Consensus 120 ~~~~~ 124 (125)
T cd01044 120 IALLD 124 (125)
T ss_pred HHhhh
Confidence 87763
No 11
>cd00907 Bacterioferritin Bacterioferritin, ferritin-like diiron-binding domain. Bacterioferritins, also known as cytochrome b1, are members of a broad superfamily of ferritin-like diiron-carboxylate proteins. Similar to ferritin in architecture, Bfr forms an oligomer of 24 subunits that assembles to form a hollow sphere with 432 symmetry. Up to 12 heme cofactor groups (iron protoporphyrin IX or coproporphyrin III) are bound between dimer pairs. The role of the heme is unknown, although it may be involved in mediating iron-core reduction and iron release. Each subunit is composed of a four-helix bundle which carries a diiron ferroxidase center; it is here that initial oxidation of ferrous iron by molecular oxygen occurs, facilitating the detoxification of iron, protection against dioxygen and radical products, and storage of ferric-hydroxyphosphate at the core. Some bacterioferritins are composed of two subunit types, one conferring heme-binding ability (alpha) and the other (beta) best
Probab=95.56 E-value=0.45 Score=39.34 Aligned_cols=130 Identities=12% Similarity=0.062 Sum_probs=94.8
Q ss_pred chhhhhHHhHHHHHHHHHHhhhhCCCccccCCcccCCCCCCccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhc-CCC
Q 036999 6 VDLLEFPLNLEYLEAEFFLFGSLGYGLDKVAPNLTLGGPAPLGAKKANLDPLTKDLVLQFAWQEVGHLKAIKKTVK-GFP 84 (273)
Q Consensus 6 ~diLNFALnLEyLEa~FY~~a~~g~gl~~~~~~l~~ggp~~~g~~~a~l~~~v~~~~~eia~~E~~HV~~L~~aLg-av~ 84 (273)
++.||-+++.||--...|.+...-. + ..++ +.+...+.+++.+|..|...|-.-+. -..
T Consensus 7 ~~~Ln~~l~~E~~a~~~Y~~~a~~~--~-----------------~~~~-~~~~~~f~~~a~ee~~Ha~~lae~i~~lGg 66 (153)
T cd00907 7 IEALNKALTGELTAINQYFLHARML--E-----------------DWGL-EKLAERFRKESIEEMKHADKLIERILFLEG 66 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--H-----------------cCCh-HHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 5789999999999999888554210 0 0111 56789999999999999999988764 112
Q ss_pred CccccCCcchHHHHHHHhcCCCCCCCCCCCCChHHHHHHHhhcchhhHHhhccccc---cCCChhHHHHHHhHHHhhhhh
Q 036999 85 RPLLDLSAGSFAKVIDKAFGKPLNPPFDPYANSINYLIASYLIPYVGLTGYVGANP---NLQNAISKRLVAGLLGVESGQ 161 (273)
Q Consensus 85 ~P~id~s~~~F~~~~~~A~g~~l~p~FdPy~n~~~FL~~A~~~E~vGvtAY~Gaap---~l~~~~~l~~Aa~Il~VEA~H 161 (273)
+|.+.-. .++ ....+....|..+.--|.--+..|.-... ...++......-.|+..|-.|
T Consensus 67 ~p~~~~~----------------~~~-~~~~~~~~~l~~~l~~E~~~~~~y~~~~~~A~~~~D~~t~~~l~~~~~~e~~h 129 (153)
T cd00907 67 LPNLQRL----------------GKL-RIGEDVPEMLENDLALEYEAIAALNEAIALCEEVGDYVSRDLLEEILEDEEEH 129 (153)
T ss_pred CCCCCcC----------------CCC-CcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 3333210 011 11136678888888888889999998754 367888899999999999999
Q ss_pred HHHHHHHHHHh
Q 036999 162 DAVIRAFLYEK 172 (273)
Q Consensus 162 aa~IR~lL~~~ 172 (273)
..+++.++..-
T Consensus 130 ~~~l~~~l~~~ 140 (153)
T cd00907 130 IDWLETQLDLI 140 (153)
T ss_pred HHHHHHHHHHH
Confidence 99999988753
No 12
>cd01052 DPSL DPS-like protein, ferritin-like diiron-binding domain. DPSL (DPS-like). DPSL is a phylogenetically distinct class within the ferritin-like superfamily, and similar in many ways to the DPS (DNA Protecting protein under Starved conditions) proteins. Like DPS, these proteins are expressed in response to oxidative stress, form dodecameric cage-like particles, preferentially utilize hydrogen peroxide in the controlled oxidation of iron, and possess a short N-terminal extension implicated in stabilizing cellular DNA. This domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. These proteins are distantly related to bacterial ferritins which assemble 24 monomers, each of which have a four-helix bundle with a fifth shorter helix at the C terminus and a diiron (ferroxidase) center. Ferritins contain a center where oxidation of ferrous iron by molecular oxygen occurs, facilitating the detoxification of iron, protection against dioxygen and radical
Probab=95.49 E-value=0.46 Score=39.04 Aligned_cols=138 Identities=14% Similarity=0.120 Sum_probs=96.2
Q ss_pred chhhhhHHhHHHHHHHHHHhhhhCCCccccCCcccCCCCCCccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhc-CCC
Q 036999 6 VDLLEFPLNLEYLEAEFFLFGSLGYGLDKVAPNLTLGGPAPLGAKKANLDPLTKDLVLQFAWQEVGHLKAIKKTVK-GFP 84 (273)
Q Consensus 6 ~diLNFALnLEyLEa~FY~~a~~g~gl~~~~~~l~~ggp~~~g~~~a~l~~~v~~~~~eia~~E~~HV~~L~~aLg-av~ 84 (273)
++.||=+|+.|+.-...|..-..- + .|| ++ ..+...+++++.+|..|+..|-.-+- =-.
T Consensus 8 ~~~Ln~~la~e~~~~~~y~~~~~~---------~--~g~--------~f-~~l~~~~~~~~~ee~~Had~laEri~~lGg 67 (148)
T cd01052 8 IELLNKAFADEWLAYYYYTILAKH---------V--KGP--------EG-EGIKEELEEAAEEELNHAELLAERIYELGG 67 (148)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---------H--cCC--------ch-HHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 467999999999988777765421 0 011 12 46889999999999999999987765 122
Q ss_pred CccccCCcchHHHHHHHhcCCCCCCCCCCCCChHHHHHHHhhcchhhHHhhccccccC--CChhHHHHHHhHHHhhhhhH
Q 036999 85 RPLLDLSAGSFAKVIDKAFGKPLNPPFDPYANSINYLIASYLIPYVGLTGYVGANPNL--QNAISKRLVAGLLGVESGQD 162 (273)
Q Consensus 85 ~P~id~s~~~F~~~~~~A~g~~l~p~FdPy~n~~~FL~~A~~~E~vGvtAY~Gaap~l--~~~~~l~~Aa~Il~VEA~Ha 162 (273)
.|..... .|... .+..+..+-.-..+....|....--|...+..|....... .|.......-.|+.-|-.|.
T Consensus 68 ~p~~~~~--~~~~~----~~~~~~~~~~~~~~~~~~l~~~~~~e~~~i~~~~~~~~~a~~~D~~t~~ll~~~l~de~~h~ 141 (148)
T cd01052 68 TPPRDPK--DWYEI----SGCKCGYLPPDPPDVKGILKVNLKAERCAIKVYKELCDMTHGKDPVTYDLALAILNEEIEHE 141 (148)
T ss_pred CCCCChH--HHHHH----hcccccCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHH
Confidence 3444321 22211 1111111111234777899999999999999999888765 56777888899999999999
Q ss_pred HHHHHHH
Q 036999 163 AVIRAFL 169 (273)
Q Consensus 163 a~IR~lL 169 (273)
.+++++|
T Consensus 142 ~~~~~~~ 148 (148)
T cd01052 142 EDLEELL 148 (148)
T ss_pred HHHHhhC
Confidence 9999875
No 13
>PF13668 Ferritin_2: Ferritin-like domain
Probab=94.54 E-value=0.13 Score=42.21 Aligned_cols=55 Identities=22% Similarity=0.195 Sum_probs=48.1
Q ss_pred ccchhhhhHHhHHHHHHHHHHhhhhCCCccccCCcccCCCCCCccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 036999 4 SDVDLLEFPLNLEYLEAEFFLFGSLGYGLDKVAPNLTLGGPAPLGAKKANLDPLTKDLVLQFAWQEVGHLKAIKKTVK 81 (273)
Q Consensus 4 ~D~diLNFALnLEyLEa~FY~~a~~g~gl~~~~~~l~~ggp~~~g~~~a~l~~~v~~~~~eia~~E~~HV~~L~~aLg 81 (273)
++.++|.+|+.+|..-..+|..++.- --++.++..+..|+..|..|...||..|+
T Consensus 82 ~~~~~L~~A~~~E~~~~~~Y~g~~~~-----------------------~~~~~~~~~~~~i~~~Ea~H~~~ir~ll~ 136 (137)
T PF13668_consen 82 DDASFLRLAYTLEDVGVSAYKGAAPQ-----------------------IEDPELKALAASIAGVEARHAAWIRNLLG 136 (137)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------cCCHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 67899999999999999999988631 01678999999999999999999999875
No 14
>cd01051 Mn_catalase Manganese catalase, ferritin-like diiron-binding domain. Manganese (Mn) catalase is a member of a broad superfamily of ferritin-like diiron enzymes. While many diiron enzymes catalyze dioxygen-dependent reactions, manganese catalase performs peroxide-dependent oxidation-reduction. Catalases are important antioxidant metalloenzymes that catalyze disproportionation of hydrogen peroxide, forming dioxygen and water. Manganese catalase, a nonheme type II catalase, contains a binuclear manganese cluster that catalyzes the redox dismutation of hydrogen peroxide, interconverting between dimanganese(II) [(2,2)] and dimanganese(III) [(3,3)] oxidation states during turnover. Mn catalases are found in a broad range of microorganisms in microaerophilic environments, including the mesophilic lactic acid bacteria (e.g., Lactobacillus plantarum) and bacterial and archaeal thermophiles (e.g., Thermus thermophilus and Pyrobaculum caldifontis). L. plantarum and T. thermophilus holoenz
Probab=94.21 E-value=0.62 Score=40.14 Aligned_cols=98 Identities=18% Similarity=0.137 Sum_probs=79.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhhc---C--CCCccccCCcchHHHHHHHhcCCCCCCCCCCCCChHHHHHHHhhcch
Q 036999 55 DPLTKDLVLQFAWQEVGHLKAIKKTVK---G--FPRPLLDLSAGSFAKVIDKAFGKPLNPPFDPYANSINYLIASYLIPY 129 (273)
Q Consensus 55 ~~~v~~~~~eia~~E~~HV~~L~~aLg---a--v~~P~id~s~~~F~~~~~~A~g~~l~p~FdPy~n~~~FL~~A~~~E~ 129 (273)
++.+++.+.+|+.+|..|+..|-..+. + ...|- ++ +..++-.|...-|......|.
T Consensus 52 ~~~~~d~l~~ia~eEm~H~e~la~~I~~Lg~~~~g~pw---~~----------------~yv~~~~d~~~~L~~ni~aE~ 112 (156)
T cd01051 52 DPKYRDLLLDIGTEELSHLEMVATLIAMLLKDSQGVPW---TA----------------AYIQSSGNLVADLRSNIAAES 112 (156)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcC---CC----------------cccCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999999998765 1 11221 11 013344566788888888999
Q ss_pred hhHHhhccccccCCChhHHHHHHhHHHhhhhhHHHHHHHHHH
Q 036999 130 VGLTGYVGANPNLQNAISKRLVAGLLGVESGQDAVIRAFLYE 171 (273)
Q Consensus 130 vGvtAY~Gaap~l~~~~~l~~Aa~Il~VEA~Haa~IR~lL~~ 171 (273)
-+..-|.=.+..++|+.++....-|+.-|-.|.-.++.+|.+
T Consensus 113 ~Ai~~Y~~l~~~~~Dp~v~~~l~~I~~rE~~H~~~f~~~l~~ 154 (156)
T cd01051 113 RARLTYERLYEMTDDPGVKDTLSFLLVREIVHQNAFGKALES 154 (156)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999888764
No 15
>cd07908 Mn_catalase_like Manganese catalase-like protein, ferritin-like diiron-binding domain. This uncharacterized bacterial protein family has a ferritin-like domain similar to that of the manganese catalase protein of Lactobacillus plantarum and the bll3758 protein of Bradyrhizobium japonicum. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterio
Probab=93.84 E-value=0.22 Score=41.83 Aligned_cols=54 Identities=17% Similarity=0.185 Sum_probs=46.0
Q ss_pred ccchhhhhHHhHHHHHHHHHHhhhhCCCccccCCcccCCCCCCccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036999 4 SDVDLLEFPLNLEYLEAEFFLFGSLGYGLDKVAPNLTLGGPAPLGAKKANLDPLTKDLVLQFAWQEVGHLKAIKKTV 80 (273)
Q Consensus 4 ~D~diLNFALnLEyLEa~FY~~a~~g~gl~~~~~~l~~ggp~~~g~~~a~l~~~v~~~~~eia~~E~~HV~~L~~aL 80 (273)
+..++|.+++.+|.=--.||...+.- -.|+.+++++.+|..+|..|.+.|++.|
T Consensus 101 ~~~~~L~~~~~~E~~ai~~Y~~~~~~-----------------------~~d~~~r~ll~~I~~eE~~H~~~L~~~l 154 (154)
T cd07908 101 SIKEMLKLDIASEKAAIAKYKRQAET-----------------------IKDPYIRALLNRIILDEKLHIKILEELL 154 (154)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------cCCHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 45679999999999999999998631 1368899999999999999999998754
No 16
>cd01045 Ferritin_like_AB Uncharacterized family of ferritin-like proteins found in archaea and bacteria. Ferritin-like domain found in archaea and bacteria (Ferritin_like_AB). This uncharacterized domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins whose function is unknown. This family includes unknown or hypothetical proteins which were sequenced from mostly anaerobic or microaerophilic metal-metabolizing and/or nitrogen-fixing microbes. The family includes sequences from ferric-, sulfate-, and arsenic-reducing bacteria, Geobacter, Magnetospirillum, Desulfovibrio, and Desulfitobacterium. Also included are several nitrogen-fixing endosymbiotic bacteria, Rhizobium, Mesorhizobium, and Bradyrhizobium; also phototrophic purple nonsulfur bacteria, Rhodobacter and Rhodopseudomonas, as well as, obligate thermophiles, Thermotoga, Thermoanaerobacter, and Pyrococcus. The conserved residues of a diiron center are present in this uncharacterized domain.
Probab=93.74 E-value=0.24 Score=39.09 Aligned_cols=54 Identities=24% Similarity=0.324 Sum_probs=46.0
Q ss_pred CccchhhhhHHhHHHHHHHHHHhhhhCCCccccCCcccCCCCCCccccccCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 036999 3 QSDVDLLEFPLNLEYLEAEFFLFGSLGYGLDKVAPNLTLGGPAPLGAKKANLDPLTKDLVLQFAWQEVGHLKAIKKT 79 (273)
Q Consensus 3 ~~D~diLNFALnLEyLEa~FY~~a~~g~gl~~~~~~l~~ggp~~~g~~~a~l~~~v~~~~~eia~~E~~HV~~L~~a 79 (273)
.++.++|..|+..|---.+||...+.. ..++.++.++++|..+|..|+..|+..
T Consensus 85 ~~~~~~l~~a~~~E~~~~~~Y~~~~~~-----------------------~~d~~~~~~~~~l~~~E~~H~~~l~~~ 138 (139)
T cd01045 85 MDPLEALRLAIEIEKDAIEFYEELAEK-----------------------AEDPEVKKLFEELAEEERGHLRLLEEL 138 (139)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------cCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456789999999999999999998631 136789999999999999999999863
No 17
>PRK10635 bacterioferritin; Provisional
Probab=93.61 E-value=2 Score=36.99 Aligned_cols=128 Identities=15% Similarity=0.146 Sum_probs=91.5
Q ss_pred chhhhhHHhHHHHHHHHHH-hhhhCCCccccCCcccCCCCCCccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhc---
Q 036999 6 VDLLEFPLNLEYLEAEFFL-FGSLGYGLDKVAPNLTLGGPAPLGAKKANLDPLTKDLVLQFAWQEVGHLKAIKKTVK--- 81 (273)
Q Consensus 6 ~diLNFALnLEyLEa~FY~-~a~~g~gl~~~~~~l~~ggp~~~g~~~a~l~~~v~~~~~eia~~E~~HV~~L~~aLg--- 81 (273)
++.||=+|+.|+.-..=|. ++..- . .-+++. ....+..-+.+|..|...|-.-|-
T Consensus 8 i~~LN~~L~~El~Ai~QY~~ha~~~----------~----------~~G~~~-la~~~~~ea~eEm~HA~~l~eRIl~Lg 66 (158)
T PRK10635 8 INYLNKLLGNELVAINQYFLHARMF----------K----------NWGLMR-LNDVEYHESIDEMKHADKYIERILFLE 66 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----------H----------cCCcHH-HHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 5789999999999885554 43310 1 112222 222333338899999998886643
Q ss_pred CCCCccccCCcchHHHHHHHhcCCCCCCCCCCCCChHHHHHHHhhcchhhHHhhcccccc---CCChhHHHHHHhHHHhh
Q 036999 82 GFPRPLLDLSAGSFAKVIDKAFGKPLNPPFDPYANSINYLIASYLIPYVGLTGYVGANPN---LQNAISKRLVAGLLGVE 158 (273)
Q Consensus 82 av~~P~id~s~~~F~~~~~~A~g~~l~p~FdPy~n~~~FL~~A~~~E~vGvtAY~Gaap~---l~~~~~l~~Aa~Il~VE 158 (273)
+.| .++- + ++..+-.|....|......|.-.+.-|.=++.. ..++..+.+...|+.-|
T Consensus 67 G~P--~~~~----------------~-~~~~~g~~v~eml~~dl~~E~~ai~~y~e~i~~a~~~~D~~s~~ll~~iL~dE 127 (158)
T PRK10635 67 GIP--NLQD----------------L-GKLNIGEDVEEMLRSDLRLELEGAKDLREAIAYADSVHDYVSRDMMIEILADE 127 (158)
T ss_pred CCC--CCCC----------------C-CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 433 2221 1 122334688999999999999999999988886 56788899999999999
Q ss_pred hhhHHHHHHHHHHhh
Q 036999 159 SGQDAVIRAFLYEKA 173 (273)
Q Consensus 159 A~Haa~IR~lL~~~~ 173 (273)
-.|.-++.+.|....
T Consensus 128 e~H~~~le~~l~~i~ 142 (158)
T PRK10635 128 EGHIDWLETELDLIG 142 (158)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999988643
No 18
>cd01041 Rubrerythrin Rubrerythrin, ferritin-like diiron-binding domain. Rubrerythrin domain is a nonheme iron binding domain found in many air-sensitive bacteria and archaea and member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The homodimeric rubrerythrin protein contains a binuclear metal center located within a four helix bundle. Many, but not all, rubrerythrin proteins have a second domain with a rubredoxin-like hexacoordinated iron center. Rubrerythrin is thought to reduce hydrogen peroxide as part of an oxidative stress protection system but its function is still poorly understood.
Probab=89.99 E-value=6.7 Score=32.14 Aligned_cols=125 Identities=14% Similarity=-0.052 Sum_probs=90.5
Q ss_pred chhhhhHHhHHHHHHHHHHhhhhCCCccccCCcccCCCCCCccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhc-CCC
Q 036999 6 VDLLEFPLNLEYLEAEFFLFGSLGYGLDKVAPNLTLGGPAPLGAKKANLDPLTKDLVLQFAWQEVGHLKAIKKTVK-GFP 84 (273)
Q Consensus 6 ~diLNFALnLEyLEa~FY~~a~~g~gl~~~~~~l~~ggp~~~g~~~a~l~~~v~~~~~eia~~E~~HV~~L~~aLg-av~ 84 (273)
.+.||=|+.-|+-....|..-+.- ++.-++ +.+.+.+..++..|..|..-+.+.|. -..
T Consensus 3 ~~~L~~a~~~E~~a~~~Y~~~a~~-------------------a~~~g~-~~~a~~f~~~a~eE~~HA~~~~~~l~~l~g 62 (134)
T cd01041 3 EKNLLAAFAGESQARNRYTYFAEK-------------------ARKEGY-EQIARLFRATAENEKEHAKGHFKLLKGLGG 62 (134)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHH-------------------HHHCCH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 578999999999977777665421 112233 56788999999999999998888876 222
Q ss_pred CccccCCcchHHHHHHHhcCCCCCCCCCCCCChHHHHHHHhhcch-hhHHhhccccc---cCCChhHHHHHHhHHHhhhh
Q 036999 85 RPLLDLSAGSFAKVIDKAFGKPLNPPFDPYANSINYLIASYLIPY-VGLTGYVGANP---NLQNAISKRLVAGLLGVESG 160 (273)
Q Consensus 85 ~P~id~s~~~F~~~~~~A~g~~l~p~FdPy~n~~~FL~~A~~~E~-vGvtAY~Gaap---~l~~~~~l~~Aa~Il~VEA~ 160 (273)
.|. . |-.++.+...-|..+.--|. .....|.-.+. .-.+..+....-.|+..|.+
T Consensus 63 ~~~---~------------------~~~~~~~~~~~l~~~~~~E~~e~~~~y~~~~~~A~~e~d~~~~~~f~~i~~~E~~ 121 (134)
T cd01041 63 GDT---G------------------PPIGIGDTLENLKAAIAGETYEYTEMYPEFAEVAEEEGFKEAARSFEAIAEAEKV 121 (134)
T ss_pred CCc---C------------------CCCCcchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 222 1 22345677788888888887 35577765554 45677788888899999999
Q ss_pred hHHHHHHHHHH
Q 036999 161 QDAVIRAFLYE 171 (273)
Q Consensus 161 Haa~IR~lL~~ 171 (273)
|.-++..+|..
T Consensus 122 H~~~l~~~l~~ 132 (134)
T cd01041 122 HAERYKKALEN 132 (134)
T ss_pred HHHHHHHHhhc
Confidence 99999988764
No 19
>PF02915 Rubrerythrin: Rubrerythrin; InterPro: IPR003251 Rubrerythrin (Rr), found in anaerobic sulphate-reducing bacteria [], is a fusion protein containing an N-terminal diiron-binding domain and a C-terminal domain homologous to rubredoxin []. The physiological role of Rr has not been identified. The 3-D structure of Desulphovibrio vulgaris rubrerythrin has been solved []. The structure reveals a tetramer of two-domain subunits. In each monomer, the N-terminal 146 residues form a four-alpha-helix bundle containing the diiron-oxo site (centre I), and the C-terminal 45 residues form a rubredoxin-like FeS4 domain.; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1VJX_A 2FZF_A 3SID_B 3QHC_B 3QHB_B 4DI0_A 1J30_B 1YV1_A 1YUZ_B 1YUX_B ....
Probab=89.44 E-value=1 Score=35.59 Aligned_cols=52 Identities=23% Similarity=0.193 Sum_probs=43.3
Q ss_pred cchhhhhHHhHHHHHHHHHHhhhhCCCccccCCcccCCCCCCccccccCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 036999 5 DVDLLEFPLNLEYLEAEFFLFGSLGYGLDKVAPNLTLGGPAPLGAKKANLDPLTKDLVLQFAWQEVGHLKAIKKT 79 (273)
Q Consensus 5 D~diLNFALnLEyLEa~FY~~a~~g~gl~~~~~~l~~ggp~~~g~~~a~l~~~v~~~~~eia~~E~~HV~~L~~a 79 (273)
...+|..|+..|---..||...+.. .-++.+++++.+|+.+|..|++.|+..
T Consensus 85 ~~~~l~~a~~~E~~~~~~Y~~~a~~-----------------------~~~~~~~~~~~~l~~~E~~H~~~l~~l 136 (137)
T PF02915_consen 85 LEEALEMAIKEEKDAYEFYAELARK-----------------------APDPEIRKLFEELAKEEKEHEDLLEKL 136 (137)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHH-----------------------TTSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----------------------CCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4567888888888888999998632 136889999999999999999999864
No 20
>TIGR02284 conserved hypothetical protein. Members of this protein family are found mostly in the Proteobacteria, although one member is found in the the marine planctomycete Pirellula sp. strain 1. The function is unknown.
Probab=89.39 E-value=4.5 Score=34.01 Aligned_cols=135 Identities=14% Similarity=0.098 Sum_probs=95.2
Q ss_pred chhhhhHHhHHHHHHHHHHhhhhCCCccccCCcccCCCCCCccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhc-CCC
Q 036999 6 VDLLEFPLNLEYLEAEFFLFGSLGYGLDKVAPNLTLGGPAPLGAKKANLDPLTKDLVLQFAWQEVGHLKAIKKTVK-GFP 84 (273)
Q Consensus 6 ~diLNFALnLEyLEa~FY~~a~~g~gl~~~~~~l~~ggp~~~g~~~a~l~~~v~~~~~eia~~E~~HV~~L~~aLg-av~ 84 (273)
++.||=.+...|=--++|..++.. + =++..+.++++++.+...|+.-|+..+. -..
T Consensus 2 i~~Ln~Lie~~~D~~~gY~~aae~----------------------v-~~~~lk~~f~~~~~~~~~~~~eL~~~v~~lGg 58 (139)
T TIGR02284 2 IHSLNDLIEISIDGKDGFEESAEE----------------------V-KDPELATLFRRIAGEKSAIVSELQQVVASLGG 58 (139)
T ss_pred hHHHHHHHHHcccHHHHHHHHHHH----------------------C-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 467888888888788999998731 1 2578999999999999999999999887 222
Q ss_pred CccccCCcchHHHHHHHhcCCCCCCCCCCCCChHHHHHHHhhcchhhHHhhccccccC-CChhHHHHHHhHHHhhhhhHH
Q 036999 85 RPLLDLSAGSFAKVIDKAFGKPLNPPFDPYANSINYLIASYLIPYVGLTGYVGANPNL-QNAISKRLVAGLLGVESGQDA 163 (273)
Q Consensus 85 ~P~id~s~~~F~~~~~~A~g~~l~p~FdPy~n~~~FL~~A~~~E~vGvtAY~Gaap~l-~~~~~l~~Aa~Il~VEA~Haa 163 (273)
.|.- + ++|...+..+.- .+...|.+ .++..+|....-=|+..+.+|.-+...- -.++++...-..+.-+-+|-.
T Consensus 59 ~p~~--~-gs~~g~lhr~w~-~lks~~~~-~~d~aiL~~~e~gEd~~~~~y~~aL~~~~l~~~~r~~l~~q~~~i~~~~d 133 (139)
T TIGR02284 59 KPED--H-GSMVGSLHQFWG-KIRATLTP-NDDYVVLEEAERGEDRAKKAYDETLADQDTPAAARDVALRQYPGVRACHD 133 (139)
T ss_pred CCCC--C-CcHHHHHHHHHH-HHHHHHcC-CChHHHHHHHHHhHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHH
Confidence 3432 1 344433333310 00001211 3677899999999999999999998765 567778888888877777777
Q ss_pred HHHHH
Q 036999 164 VIRAF 168 (273)
Q Consensus 164 ~IR~l 168 (273)
+||.+
T Consensus 134 ~i~~l 138 (139)
T TIGR02284 134 VIRAL 138 (139)
T ss_pred HHHhc
Confidence 77754
No 21
>cd00657 Ferritin_like Ferritin-like superfamily of diiron-containing four-helix-bundle proteins. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterioferritin, ferritin, rubrerythrin, aromatic and alkene monooxygenase hydroxylases (AAMH), ribonucleotide reductase R2 (RNRR2), acyl-ACP-desaturases (Acyl_ACP_Desat), manganese (Mn) catalases, demethoxyub
Probab=87.43 E-value=2.6 Score=31.38 Aligned_cols=54 Identities=19% Similarity=0.098 Sum_probs=43.2
Q ss_pred ccchhhhhHHhHHHHHHHHHHhhhhCCCccccCCcccCCCCCCccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036999 4 SDVDLLEFPLNLEYLEAEFFLFGSLGYGLDKVAPNLTLGGPAPLGAKKANLDPLTKDLVLQFAWQEVGHLKAIKKTV 80 (273)
Q Consensus 4 ~D~diLNFALnLEyLEa~FY~~a~~g~gl~~~~~~l~~ggp~~~g~~~a~l~~~v~~~~~eia~~E~~HV~~L~~aL 80 (273)
++.++|..++..|---..+|...... + -++.+++++..+..+|..|+..++..+
T Consensus 77 ~~~~~l~~~~~~E~~~~~~y~~~~~~----------------------~-~d~~~~~~~~~~~~~E~~H~~~~~~~~ 130 (130)
T cd00657 77 DPAEALRAALEVEARAIAAYRELIEQ----------------------A-DDPELRRLLERILADEQRHAAWFRKLL 130 (130)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHh----------------------c-CChHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 44678888888898888888876521 1 168899999999999999999998753
No 22
>cd01046 Rubrerythrin_like rubrerythrin-like, diiron-binding domain. Rubrerythrin-like domain, similar to rubrerythrin, a nonheme iron binding domain found in many air-sensitive bacteria and archaea, and member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Rubrerythrin is thought to reduce hydrogen peroxide as part of an oxidative stress protection system. The rubrerythrin protein has two domains, a binuclear metal center located within a four-helix bundle of the rubrerythrin domain, and a rubredoxin domain. The Rubrerythrin-like domains in this CD are singular domains (no C-terminus rubredoxin domain) and are phylogenetically distinct from rubrerythrin domains of rubrerythrin-rubredoxin proteins.
Probab=83.93 E-value=20 Score=29.22 Aligned_cols=115 Identities=13% Similarity=0.060 Sum_probs=83.1
Q ss_pred hhhhhHHhHHHHHHHHHHhhhhCCCccccCCcccCCCCCCccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCc
Q 036999 7 DLLEFPLNLEYLEAEFFLFGSLGYGLDKVAPNLTLGGPAPLGAKKANLDPLTKDLVLQFAWQEVGHLKAIKKTVKGFPRP 86 (273)
Q Consensus 7 diLNFALnLEyLEa~FY~~a~~g~gl~~~~~~l~~ggp~~~g~~~a~l~~~v~~~~~eia~~E~~HV~~L~~aLgav~~P 86 (273)
+-||=+++-|.-+...|..-+.- ++.-++ +.+.+.+..++..|..|...+.+.++.++
T Consensus 4 ~~L~~a~~~E~~a~~~Y~~~a~~-------------------a~~eG~-~~~A~~f~~~a~eE~~HA~~~~~~l~~i~-- 61 (123)
T cd01046 4 EDLEANFKGETTEVGMYLAMARV-------------------AQREGY-PEVAEELKRIAMEEAEHAARFAELLGKVS-- 61 (123)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHH-------------------HHHCCC-HHHHHHHHHHHHHHHHHHHHHHHHHhcCc--
Confidence 56899999999999888876421 123334 56889999999999999999999876543
Q ss_pred cccCCcchHHHHHHHhcCCCCCCCCCCCCChHHHHHHHhhcchhhHHhhccccc---cCCChhHHHHHHhHHHhhhhhHH
Q 036999 87 LLDLSAGSFAKVIDKAFGKPLNPPFDPYANSINYLIASYLIPYVGLTGYVGANP---NLQNAISKRLVAGLLGVESGQDA 163 (273)
Q Consensus 87 ~id~s~~~F~~~~~~A~g~~l~p~FdPy~n~~~FL~~A~~~E~vGvtAY~Gaap---~l~~~~~l~~Aa~Il~VEA~Haa 163 (273)
.|...-|..+.--|.-.+..|...+. .-.+.+....--.|+.+|..|.-
T Consensus 62 ----------------------------~~~~~~le~a~~~E~~~~~~~~~~~~~A~~egd~~~~~~~~~~~~~E~~H~~ 113 (123)
T cd01046 62 ----------------------------EDTKENLEMMLEGEAGANEGKKDAATEAKAEGLDEAHDFFHEAAKDEARHGK 113 (123)
T ss_pred ----------------------------ccHHHHHHHHHHhHHHHHHhHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence 13334455555555555555554433 34567778888899999999999
Q ss_pred HHHHHHHH
Q 036999 164 VIRAFLYE 171 (273)
Q Consensus 164 ~IR~lL~~ 171 (273)
+++.+|..
T Consensus 114 ~~~~~l~~ 121 (123)
T cd01046 114 MLKGLLER 121 (123)
T ss_pred HHHHHHhh
Confidence 99988764
No 23
>TIGR00754 bfr bacterioferritin. Bacterioferritin is a homomultimer most species. In Neisseria gonorrhoeae, Synechocystis PCC6803, Magnetospirillum magnetotacticum, and Pseudomonas aeruginosa, two types of subunit are found in a heteromultimeric complex, with each species having one member of each type. At present, both types of subunit are including in this single model.
Probab=82.56 E-value=28 Score=29.22 Aligned_cols=130 Identities=15% Similarity=0.062 Sum_probs=92.4
Q ss_pred chhhhhHHhHHHHHHHHHHhhhhCCCccccCCcccCCCCCCccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhc-CCC
Q 036999 6 VDLLEFPLNLEYLEAEFFLFGSLGYGLDKVAPNLTLGGPAPLGAKKANLDPLTKDLVLQFAWQEVGHLKAIKKTVK-GFP 84 (273)
Q Consensus 6 ~diLNFALnLEyLEa~FY~~a~~g~gl~~~~~~l~~ggp~~~g~~~a~l~~~v~~~~~eia~~E~~HV~~L~~aLg-av~ 84 (273)
++.||=+|+-||.-...|..-..-. . .-++ +.....+...+.+|..|..-|-.-|- -..
T Consensus 8 ~~~LN~~l~~E~~a~~~Y~~~~~~~--~-----------------~~~~-~g~a~~~~~~a~EE~~Ha~~laeri~~lGg 67 (157)
T TIGR00754 8 IQHLNKQLTNELTAINQYFLHARMQ--K-----------------NWGL-KELADHEYHESIDEMKHADEIIERILFLEG 67 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--H-----------------cCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 5789999999997766665543211 0 0111 33556778888899999999887654 112
Q ss_pred CccccCCcchHHHHHHHhcCCCCCCCCCCCCChHHHHHHHhhcchhhHHhhccccc---cCCChhHHHHHHhHHHhhhhh
Q 036999 85 RPLLDLSAGSFAKVIDKAFGKPLNPPFDPYANSINYLIASYLIPYVGLTGYVGANP---NLQNAISKRLVAGLLGVESGQ 161 (273)
Q Consensus 85 ~P~id~s~~~F~~~~~~A~g~~l~p~FdPy~n~~~FL~~A~~~E~vGvtAY~Gaap---~l~~~~~l~~Aa~Il~VEA~H 161 (273)
+|.+. ++. +..+-.+....+-.+.-.|......|..... ...++....+.-.|+.-|-.|
T Consensus 68 ~p~~~----------------~i~-~~~~~~~~~e~l~~~l~~E~~~~~~~~e~i~~A~~~~D~~t~~ll~~~i~eee~h 130 (157)
T TIGR00754 68 LPNLQ----------------DLG-KLRIGETVREMLEADLALELDVLNRLKEAIAYAEEVRDYVSRDLLEEILEDEEEH 130 (157)
T ss_pred CCCCC----------------cCC-CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 33321 011 1222357778999999999999999998854 678888889999999999999
Q ss_pred HHHHHHHHHHh
Q 036999 162 DAVIRAFLYEK 172 (273)
Q Consensus 162 aa~IR~lL~~~ 172 (273)
.-++|+.|...
T Consensus 131 ~~~l~~~l~~~ 141 (157)
T TIGR00754 131 IDWLETQLELI 141 (157)
T ss_pred HHHHHHHHHHH
Confidence 99999988753
No 24
>PF14530 DUF4439: Domain of unknown function (DUF4439); PDB: 2IB0_B.
Probab=82.29 E-value=5.1 Score=33.81 Aligned_cols=98 Identities=14% Similarity=0.099 Sum_probs=66.6
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHhhc-C-----CCCccccCCcchHHHHHHHhcCCCCCCCCCCCCChHHHHHHHh
Q 036999 52 ANLDPLTKDLVLQFAWQEVGHLKAIKKTVK-G-----FPRPLLDLSAGSFAKVIDKAFGKPLNPPFDPYANSINYLIASY 125 (273)
Q Consensus 52 a~l~~~v~~~~~eia~~E~~HV~~L~~aLg-a-----v~~P~id~s~~~F~~~~~~A~g~~l~p~FdPy~n~~~FL~~A~ 125 (273)
+.+++..++.+.+...........|...|. . .+.|.|.+ || |-+|..+-+..+.
T Consensus 21 a~~~~~~r~~~~~~~~~HR~rRd~l~~~l~~~g~~~p~~~aaY~l-------------------P~-~v~d~~sa~~la~ 80 (131)
T PF14530_consen 21 ARLDGDRRAAARAALAAHRARRDALAAALRAAGATPPPPEAAYQL-------------------PF-PVTDPASAAALAA 80 (131)
T ss_dssp HHS-GGGHHHHHHHHHHHHHHHHHHHHHHHHTT-------SS----------------------SS----SHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCC-------------------CC-CCCCHHHHHHHHH
Confidence 345677788888888888888888888887 2 22333433 45 4578888898999
Q ss_pred hcchhhHHhhccccccCCChhHHHHHHhHHHhhhhhHHHHHHHHH
Q 036999 126 LIPYVGLTGYVGANPNLQNAISKRLVAGLLGVESGQDAVIRAFLY 170 (273)
Q Consensus 126 ~~E~vGvtAY~Gaap~l~~~~~l~~Aa~Il~VEA~Haa~IR~lL~ 170 (273)
.+|.=-..+|.... .-++++.+..+...|..-+.-+.-.|..+.
T Consensus 81 ~lE~~~a~aw~~lv-~a~~~~~R~~av~aL~~aA~ra~~W~~~~g 124 (131)
T PF14530_consen 81 ALEDDCAAAWRALV-AATDPALRRFAVDALTEAAVRAARWRAAAG 124 (131)
T ss_dssp HHHHHHHHHHHHHH-H--SHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-hcCChhHHHHHHHHHHHHHHHHHHhccccC
Confidence 99998899999988 888899999988888776665555554443
No 25
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=80.42 E-value=4.4 Score=44.49 Aligned_cols=55 Identities=16% Similarity=0.205 Sum_probs=46.1
Q ss_pred ccchhhhhHHhHHHHHHHHHHhhhhCCCccccCCcccCCCCCCccccccCCCHH-HHHHHHHHHHHHHHHHHHHHHhhc
Q 036999 4 SDVDLLEFPLNLEYLEAEFFLFGSLGYGLDKVAPNLTLGGPAPLGAKKANLDPL-TKDLVLQFAWQEVGHLKAIKKTVK 81 (273)
Q Consensus 4 ~D~diLNFALnLEyLEa~FY~~a~~g~gl~~~~~~l~~ggp~~~g~~~a~l~~~-v~~~~~eia~~E~~HV~~L~~aLg 81 (273)
++.++|.+|+-.|.=--+||...+... -|+. .++++.+|+..|..|++.|++.+.
T Consensus 941 ~~~~al~lAm~~Ekdai~fY~~la~~~-----------------------~d~e~~k~l~~~LA~EEk~Hl~~L~~~~d 996 (1006)
T PRK12775 941 DPGNLFRIAIEFERRAVKFFKERVAET-----------------------PDGSVERQLYKELAAEEREHVALLTTEFE 996 (1006)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhhC-----------------------CChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468899999999999999999986311 1344 699999999999999999998775
No 26
>cd01041 Rubrerythrin Rubrerythrin, ferritin-like diiron-binding domain. Rubrerythrin domain is a nonheme iron binding domain found in many air-sensitive bacteria and archaea and member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The homodimeric rubrerythrin protein contains a binuclear metal center located within a four helix bundle. Many, but not all, rubrerythrin proteins have a second domain with a rubredoxin-like hexacoordinated iron center. Rubrerythrin is thought to reduce hydrogen peroxide as part of an oxidative stress protection system but its function is still poorly understood.
Probab=78.93 E-value=4.8 Score=33.00 Aligned_cols=57 Identities=18% Similarity=-0.003 Sum_probs=44.6
Q ss_pred cchhhhhHHhHHHHHH-HHHHhhhhCCCccccCCcccCCCCCCccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 036999 5 DVDLLEFPLNLEYLEA-EFFLFGSLGYGLDKVAPNLTLGGPAPLGAKKANLDPLTKDLVLQFAWQEVGHLKAIKKTVK 81 (273)
Q Consensus 5 D~diLNFALnLEyLEa-~FY~~a~~g~gl~~~~~~l~~ggp~~~g~~~a~l~~~v~~~~~eia~~E~~HV~~L~~aLg 81 (273)
..++|..++..|.-|+ +.|...+.- + ...=+..+.+.+++|..+|..|++.|+..|+
T Consensus 74 ~~~~l~~~~~~E~~e~~~~y~~~~~~-------------------A-~~e~d~~~~~~f~~i~~~E~~H~~~l~~~l~ 131 (134)
T cd01041 74 TLENLKAAIAGETYEYTEMYPEFAEV-------------------A-EEEGFKEAARSFEAIAEAEKVHAERYKKALE 131 (134)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHH-------------------H-HHcCCHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3588999999999876 777776521 0 1122678999999999999999999999876
No 27
>COG2406 Protein distantly related to bacterial ferritins [General function prediction only]
Probab=78.14 E-value=11 Score=33.15 Aligned_cols=107 Identities=17% Similarity=0.141 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc--CCCCc-----cccCCcchHHHHHHHhcCCCCCCCCCCCCChHHHHHHHhhcch
Q 036999 57 LTKDLVLQFAWQEVGHLKAIKKTVK--GFPRP-----LLDLSAGSFAKVIDKAFGKPLNPPFDPYANSINYLIASYLIPY 129 (273)
Q Consensus 57 ~v~~~~~eia~~E~~HV~~L~~aLg--av~~P-----~id~s~~~F~~~~~~A~g~~l~p~FdPy~n~~~FL~~A~~~E~ 129 (273)
..+.++++-...-..|.+.|..-|- ++.-| ..|+|++.- .--|-||| |...+|.++---|-
T Consensus 50 ~~keiae~Ar~E~r~H~e~i~~Ri~elg~~~Prd~~~l~dISgC~~-----------a~LPedp~-D~~~~l~vlv~AE~ 117 (172)
T COG2406 50 GIKEIAEEAREEDRKHFELIAPRIYELGGDLPRDMKKLHDISGCKP-----------AYLPEDPY-DIDEILAVLVKAER 117 (172)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHhhcCCCC-----------CCCCCCcc-CHHHHHHHHHHHHH
Confidence 3455555555666789999988775 33333 234443211 11145665 45678888888899
Q ss_pred hhHHhhccccccCC--ChhHHHHHHhHHHhhhhhHHHHHHHHHHhhhc
Q 036999 130 VGLTGYVGANPNLQ--NAISKRLVAGLLGVESGQDAVIRAFLYEKANE 175 (273)
Q Consensus 130 vGvtAY~Gaap~l~--~~~~l~~Aa~Il~VEA~Haa~IR~lL~~~~~~ 175 (273)
-.+.+|+=.-.+-. ++..-.+|-.||--|-.|.+|+-.+|++.+..
T Consensus 118 CAir~ykeic~~T~GkDprTyeLa~~IL~eEi~hr~~~~~ll~~~~s~ 165 (172)
T COG2406 118 CAIRAYKEICNLTAGKDPRTYELAEAILREEIEHRTWFLELLGKEPSG 165 (172)
T ss_pred HHHHHHHHHHccccCCCcchHHHHHHHHHHHHHHHHHHHHHhccCchh
Confidence 99999997766554 45577899999999999999999999987643
No 28
>cd01055 Nonheme_Ferritin nonheme-containing ferritins. Nonheme Ferritin domain, found in archaea and bacteria, is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The ferritin protein shell is composed of 24 protein subunits arranged in 432 symmetry. Each protein subunit, a four-helix bundle with a fifth short terminal helix, contains a dinuclear ferroxidase center (H type). Unique to this group of proteins is a third metal site in the ferroxidase center. Iron storage involves the uptake of iron (II) at the protein shell, its oxidation by molecular oxygen at the ferroxidase centers, and the movement of iron (III) into the cavity for deposition as ferrihydrite.
Probab=77.72 E-value=39 Score=27.96 Aligned_cols=129 Identities=13% Similarity=0.043 Sum_probs=79.1
Q ss_pred chhhhhHHhHHHHHHHHHHhhhhCCCccccCCcccCCCCCCccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhc-CCC
Q 036999 6 VDLLEFPLNLEYLEAEFFLFGSLGYGLDKVAPNLTLGGPAPLGAKKANLDPLTKDLVLQFAWQEVGHLKAIKKTVK-GFP 84 (273)
Q Consensus 6 ~diLNFALnLEyLEa~FY~~a~~g~gl~~~~~~l~~ggp~~~g~~~a~l~~~v~~~~~eia~~E~~HV~~L~~aLg-av~ 84 (273)
++.||=+++.|+--...|+.-+.-+ + ..++ +.+...++..+.+|..|..-+-+-|- -..
T Consensus 5 ~~~Ln~~~~~El~A~~~Yl~~a~~~--~-----------------~~~~-~~~a~~f~~~a~eE~~HA~~l~~~i~~~gg 64 (156)
T cd01055 5 EKALNEQINLELYSSYLYLAMAAWF--D-----------------SKGL-DGFANFFRVQAQEEREHAMKFFDYLNDRGG 64 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--h-----------------hcCC-hhHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 4679999999998888887754211 1 1122 56788999999999999998887763 111
Q ss_pred CccccCCcchHHHHHHHhcCCCCCCCCCCCCChHHHHHHHhhcchhhHHhhcccccc---CCChhHHHHHHhHHHhhhhh
Q 036999 85 RPLLDLSAGSFAKVIDKAFGKPLNPPFDPYANSINYLIASYLIPYVGLTGYVGANPN---LQNAISKRLVAGLLGVESGQ 161 (273)
Q Consensus 85 ~P~id~s~~~F~~~~~~A~g~~l~p~FdPy~n~~~FL~~A~~~E~vGvtAY~Gaap~---l~~~~~l~~Aa~Il~VEA~H 161 (273)
.|.+.-- .++-..+.+....|..+.-.|.--...|.-.... ..++......-.|+..|..|
T Consensus 65 ~~~~~~~----------------~~~~~~~~~~~~~l~~al~~E~~~~~~~~~l~~~A~~~~D~~~~~~l~~~l~~q~e~ 128 (156)
T cd01055 65 RVELPAI----------------EAPPSEFESLLEVFEAALEHEQKVTESINNLVDLALEEKDYATFNFLQWFVKEQVEE 128 (156)
T ss_pred CeeCCCC----------------CCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHhHHHHHHHHHHHHHHH
Confidence 2222100 0011134577788888888888877777655443 23444444444555555555
Q ss_pred HHHHHHHHH
Q 036999 162 DAVIRAFLY 170 (273)
Q Consensus 162 aa~IR~lL~ 170 (273)
...++.++.
T Consensus 129 ~~~~~~~l~ 137 (156)
T cd01055 129 EALARDILD 137 (156)
T ss_pred HHHHHHHHH
Confidence 555554444
No 29
>PF09968 DUF2202: Uncharacterized protein domain (DUF2202); InterPro: IPR019243 This domain, found in various hypothetical archaeal proteins, has no known function.; PDB: 3Q4O_A 3Q4Q_A 3Q4R_A 3Q4N_A.
Probab=77.30 E-value=50 Score=29.02 Aligned_cols=149 Identities=17% Similarity=0.171 Sum_probs=93.4
Q ss_pred chhhhhHHhHHHHHHHHHHhhhhCCCccccCCcccCCCCCCccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhc--CC
Q 036999 6 VDLLEFPLNLEYLEAEFFLFGSLGYGLDKVAPNLTLGGPAPLGAKKANLDPLTKDLVLQFAWQEVGHLKAIKKTVK--GF 83 (273)
Q Consensus 6 ~diLNFALnLEyLEa~FY~~a~~g~gl~~~~~~l~~ggp~~~g~~~a~l~~~v~~~~~eia~~E~~HV~~L~~aLg--av 83 (273)
.+-|-|.+-=|+|.-..|..-...|| ..++..|+.-|+.|...+...+. ++
T Consensus 2 ~~~Ll~m~EEEKlArDvY~~l~~~~g---------------------------~~~F~NIa~SEq~Hmdav~~Ll~kY~l 54 (162)
T PF09968_consen 2 IEGLLYMREEEKLARDVYLTLYEKWG---------------------------LPIFNNIARSEQRHMDAVKALLEKYGL 54 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-----------------------------HHHHHHHHHHHHHHHHHHHHHHHTT-
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHcC---------------------------ChHhHHHHHHHHHHHHHHHHHHHHhCC
Confidence 45688999999999999988754332 46688999999999999999998 88
Q ss_pred CCccccCCcchHHH-----HHHHh--cCCCCCCCCCCCCChHHHHHHHhhcchhhHHhhccccccCCChhHHHHHHhHHH
Q 036999 84 PRPLLDLSAGSFAK-----VIDKA--FGKPLNPPFDPYANSINYLIASYLIPYVGLTGYVGANPNLQNAISKRLVAGLLG 156 (273)
Q Consensus 84 ~~P~id~s~~~F~~-----~~~~A--~g~~l~p~FdPy~n~~~FL~~A~~~E~vGvtAY~Gaap~l~~~~~l~~Aa~Il~ 156 (273)
+-|.-+...+.|+. +-+.. -|. .+...=|.....+|.+-..=+.-+...-.+++++..=-.++.
T Consensus 55 ~dP~~~~~~G~f~~~~lq~LY~~Lv~~G~---------~S~~dAl~vga~iEe~dI~DL~~~l~~t~~~Di~~Vy~nL~~ 125 (162)
T PF09968_consen 55 EDPVEGDPVGVFTNPELQELYNQLVEQGS---------KSLEDALKVGALIEELDIADLEEALARTDNEDIKTVYENLRR 125 (162)
T ss_dssp --S-SS-STT--SSHHHHHHHHHHHHHHT---------S-HHHHHHHHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHH
T ss_pred CCCCccCCCCCcCcHHHHHHHHHHHHHhh---------hcHHHHHHHhHHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 88887765555542 11111 121 245566777888898888888888888888888877777776
Q ss_pred hhhhhHHHHHHHHHHhhhcccCCCcccHHHHHHHH
Q 036999 157 VESGQDAVIRAFLYEKANEKVHPYGIRVAEFTNKI 191 (273)
Q Consensus 157 VEA~Haa~IR~lL~~~~~~~v~Py~~tV~~~t~~I 191 (273)
--..|-......|-..+. .-.|--++-.+|-.-|
T Consensus 126 gS~NHLrAF~r~L~~~g~-~Y~pq~ls~~e~~~i~ 159 (162)
T PF09968_consen 126 GSRNHLRAFVRQLERYGV-TYTPQYLSQEEFEAIL 159 (162)
T ss_dssp HHHHHHHHHHHHHHHTT------SSS-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCC-CCCCeecCHHHHHHHH
Confidence 656776555445555543 4566667777765443
No 30
>cd01042 DMQH Demethoxyubiquinone hydroxylase, ferritin-like diiron-binding domain. Demethoxyubiquinone hydroxylases (DMQH) are members of the ferritin-like, diiron-carboxylate family which are present in eukaryotes (the CLK-1/CAT5 family) and prokaryotes (the Coq7 family). DMQH participates in one of the last steps of ubiquinone biosysnthesis and is responsible for DMQ hydroxylation, resulting in the formation of hydroxyubiquinone, a precursor of ubiquinone. CLK-1 is a mitochondrial inner membrane protein and Coq7 is a proposed interfacial integral membrane protein. Mutations in the Caenorhabditis elegans gene clk-1 affect biological timing and extend longevity. The conserved residues of a diiron center are present in this domain.
Probab=76.11 E-value=9.4 Score=33.47 Aligned_cols=105 Identities=16% Similarity=0.148 Sum_probs=72.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCCccccCCcchHHHHHHHhcCCCCCCCCCCCCChHHHHHHHhhcchhhHH
Q 036999 55 DPLTKDLVLQFAWQEVGHLKAIKKTVK-GFPRPLLDLSAGSFAKVIDKAFGKPLNPPFDPYANSINYLIASYLIPYVGLT 133 (273)
Q Consensus 55 ~~~v~~~~~eia~~E~~HV~~L~~aLg-av~~P~id~s~~~F~~~~~~A~g~~l~p~FdPy~n~~~FL~~A~~~E~vGvt 133 (273)
++.++..+++++.+|..|+....+.|. --.||.+-.. -| .++.-+.|. .-....+...+..-...|.+-..
T Consensus 28 ~~~~~~~l~~~~~~E~~Hl~~f~~~i~~~~~rps~l~P--lW-~~~gf~lG~-----~tal~G~~~a~~~~~avE~~V~~ 99 (165)
T cd01042 28 DPAVRPLIKEMLDEEKDHLAWFEELLPELGVRPSLLLP--LW-YVAGFALGA-----LTALLGKKAAMACTAAVETVVEE 99 (165)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHH--HH-HHHHHHHHH-----HHHhhChHHHHHHHHHHHHHHHH
Confidence 588999999999999999999999987 4445543221 11 111111110 00112344455666677888888
Q ss_pred hhccccccCC---ChhHHHHHHhHHHhhhhhHHHHHH
Q 036999 134 GYVGANPNLQ---NAISKRLVAGLLGVESGQDAVIRA 167 (273)
Q Consensus 134 AY~Gaap~l~---~~~~l~~Aa~Il~VEA~Haa~IR~ 167 (273)
=|......|. ++.++.....+.--|..|.-.-..
T Consensus 100 Hy~~ql~~L~~~~d~~l~~~l~~~r~DE~~H~d~A~~ 136 (165)
T cd01042 100 HYNDQLRELPAQPDKELRAIIEQFRDDELEHADIAEE 136 (165)
T ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999988887 788999999999999999865443
No 31
>cd01048 Ferritin_like_AB2 Uncharacterized family of ferritin-like proteins found in archaea and bacteria. Ferritin-like domain found in archaea and bacteria, subgroup 2 (Ferritin_like_AB2). This uncharacterized domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins whose function is unknown. The conserved residues of a diiron center are present within the putative active site.
Probab=69.53 E-value=17 Score=30.23 Aligned_cols=54 Identities=19% Similarity=0.095 Sum_probs=45.9
Q ss_pred CCccchhhhhHHhHHHHHHHHHHhhhhCCCccccCCcccCCCCCCccccccCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 036999 2 PQSDVDLLEFPLNLEYLEAEFFLFGSLGYGLDKVAPNLTLGGPAPLGAKKANLDPLTKDLVLQFAWQEVGHLKAIKK 78 (273)
Q Consensus 2 ~~~D~diLNFALnLEyLEa~FY~~a~~g~gl~~~~~~l~~ggp~~~g~~~a~l~~~v~~~~~eia~~E~~HV~~L~~ 78 (273)
+.+|.+.|+.|...|-.-.+||...+... -++.++.++..++.-|..|.+..-+
T Consensus 80 ~~s~~~al~~g~~~E~~~i~~ye~~~~~~-----------------------~d~d~k~v~~~L~~~e~~H~~~f~~ 133 (135)
T cd01048 80 PKSLQDALEVGVLIEELDIADYDRLLERT-----------------------QNPDIRDVFENLQAASRNHHLPFFR 133 (135)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHhc-----------------------ccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45899999999999999999999987421 2589999999999999999886543
No 32
>PF00210 Ferritin: Ferritin-like domain; InterPro: IPR008331 Ferritin is one of the major non-haem iron storage proteins in animals, plants, and microorganisms []. It consists of a mineral core of hydrated ferric oxide, and a multi-subunit protein shell that encloses the former and assures its solubility in an aqueous environment. In animals the protein is mainly cytoplasmic and there are generally two or more genes that encode closely related subunits - in mammals there are two subunits which are known as H(eavy) and L(ight). In plants ferritin is found in the chloroplast []. This entry represents the main structural domain of ferritin. The domain is also found in other ferritin-like proteins such as members of the DNA protection during starvation (DPS) family and bacterioferritins.; GO: 0008199 ferric iron binding, 0006879 cellular iron ion homeostasis; PDB: 1N1Q_C 4DYU_E 2YJJ_D 2YJK_B 2VXX_B 3FVB_A 2WLU_A 2XGW_A 2WLA_A 1Z4A_D ....
Probab=69.43 E-value=53 Score=25.76 Aligned_cols=132 Identities=17% Similarity=0.179 Sum_probs=94.0
Q ss_pred chhhhhHHhHHHHHHHHHHhhhhCCCccccCCcccCCCCCCccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhc---C
Q 036999 6 VDLLEFPLNLEYLEAEFFLFGSLGYGLDKVAPNLTLGGPAPLGAKKANLDPLTKDLVLQFAWQEVGHLKAIKKTVK---G 82 (273)
Q Consensus 6 ~diLNFALnLEyLEa~FY~~a~~g~gl~~~~~~l~~ggp~~~g~~~a~l~~~v~~~~~eia~~E~~HV~~L~~aLg---a 82 (273)
++.||-++++|+--...|..-..=. . | .++ +.+..++++.+.+|..|..-+..-+. +
T Consensus 1 i~~Ln~~l~~e~~~~~~y~~~~~~~---------~--~--------~~~-~~l~~~~~~~a~e~~~h~~~l~e~i~~lgg 60 (142)
T PF00210_consen 1 IEALNEQLALELQASQQYLNMHWNF---------D--G--------PNF-PGLAKFFQDQAEEEREHADELAERILMLGG 60 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH---------H--S--------TTH-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHh---------c--C--------CCc-hhhHHHhHHHHHHHHHHHHHHHHHHhcCCC
Confidence 4679999999998888887764210 0 0 111 56889999999999999999987754 4
Q ss_pred CCCccccCCcchHHHHHHHhcCCCCCCCCCCCCChHHHHHHHhhcchhhHHhhccccccC---CChhHHHHHHhHHHhhh
Q 036999 83 FPRPLLDLSAGSFAKVIDKAFGKPLNPPFDPYANSINYLIASYLIPYVGLTGYVGANPNL---QNAISKRLVAGLLGVES 159 (273)
Q Consensus 83 v~~P~id~s~~~F~~~~~~A~g~~l~p~FdPy~n~~~FL~~A~~~E~vGvtAY~Gaap~l---~~~~~l~~Aa~Il~VEA 159 (273)
.|.... ..+..+ . .|+= +.+...-|..+.-.|......|....... .|+......-.++.-|.
T Consensus 61 ~p~~~~----~~~~~~---~-----~~~~--~~~~~~~l~~~l~~e~~~~~~~~~l~~~a~~~~D~~t~~~~~~~l~~~~ 126 (142)
T PF00210_consen 61 KPSGSP----VEIPEI---P-----KPPE--WTDPREALEAALEDEKEIIEEYRELIKLAEKEGDPETADFLDEFLEEEE 126 (142)
T ss_dssp -SSTSH----HHHHHH---H-----SSSS--SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred CCCCcH----HHhhhh---h-----cccc--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 443321 112211 0 0111 56888999999999999999998887777 67778888888888888
Q ss_pred hhHHHHHHHHHH
Q 036999 160 GQDAVIRAFLYE 171 (273)
Q Consensus 160 ~Haa~IR~lL~~ 171 (273)
.|.-.++..|..
T Consensus 127 ~~~~~l~~~l~~ 138 (142)
T PF00210_consen 127 KHIWMLQAHLTN 138 (142)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888888877765
No 33
>PF03232 COQ7: Ubiquinone biosynthesis protein COQ7; InterPro: IPR011566 Coq7 (also known as Clk-1) is a di-iron carboxylate protein occuring in both prokaryotes and eukaryotes that is essential for ubiquinone biosynthesis [, ]. It has been implicated in the aging process as mutations in the Caenorhabditis elegans gene lead to increased lifespan []. Coq7 is a membrane-bound protein that functions as a monooxygenase to hydroxylate demethoxyubiquinone (2-methoxy-5-methyl-6-polyprenyl-1,4-benzoquinone) in the penultimate step of ubiquinone biosynthesis []. Biochemical studies indicate that NADH can serve directly as a reductant for catalytic activation of dioxygen and substrate oxidation by the enzyme, with no requirement for an additional reductase protein component []. This direct reaction with NADH is so far unique amongst members of the di-iron carboxylate protein family. This entry is specific for the bacterial Coq7 proteins.; GO: 0006744 ubiquinone biosynthetic process, 0055114 oxidation-reduction process
Probab=68.15 E-value=11 Score=33.15 Aligned_cols=33 Identities=24% Similarity=0.278 Sum_probs=28.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCCcc
Q 036999 55 DPLTKDLVLQFAWQEVGHLKAIKKTVK-GFPRPL 87 (273)
Q Consensus 55 ~~~v~~~~~eia~~E~~HV~~L~~aLg-av~~P~ 87 (273)
++.++..++++..+|..|+...++.|. --.||.
T Consensus 31 ~~~~~~~l~~~~~~E~~Hl~~f~~~l~~~~~RpS 64 (172)
T PF03232_consen 31 DPELRPFLKEMAEEEKDHLAWFEQLLPELRVRPS 64 (172)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhHHcCCCCc
Confidence 689999999999999999999999987 333564
No 34
>PF11272 DUF3072: Protein of unknown function (DUF3072); InterPro: IPR021425 This bacterial family of proteins has no known function.
Probab=65.17 E-value=17 Score=26.74 Aligned_cols=39 Identities=21% Similarity=0.361 Sum_probs=32.0
Q ss_pred hhhHHHHHHHHHHhhhcccCCCcccHHHHHHHHHHHHHhhC
Q 036999 159 SGQDAVIRAFLYEKANEKVHPYGIRVAEFTNKISQLRNTLG 199 (273)
Q Consensus 159 A~Haa~IR~lL~~~~~~~v~Py~~tV~~~t~~IS~lR~~L~ 199 (273)
+.|++.+|+|.-+.++. + |-++|.+|...+|-.||.+.+
T Consensus 18 ~aQ~syL~tL~e~Age~-~-~~~LtkaeAs~rId~L~~~~g 56 (57)
T PF11272_consen 18 GAQASYLKTLSEEAGEP-F-PDDLTKAEASERIDELQAQTG 56 (57)
T ss_pred HHHHHHHHHHHHHhCCC-C-CCcccHHHHHHHHHHHHHHhC
Confidence 56889999998887733 2 338999999999999999876
No 35
>COG1633 Uncharacterized conserved protein [Function unknown]
Probab=64.20 E-value=23 Score=31.18 Aligned_cols=56 Identities=20% Similarity=0.118 Sum_probs=45.9
Q ss_pred CccchhhhhHHhHHHHHHHHHHhhhhCCCccccCCcccCCCCCCccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 036999 3 QSDVDLLEFPLNLEYLEAEFFLFGSLGYGLDKVAPNLTLGGPAPLGAKKANLDPLTKDLVLQFAWQEVGHLKAIKKTVK 81 (273)
Q Consensus 3 ~~D~diLNFALnLEyLEa~FY~~a~~g~gl~~~~~~l~~ggp~~~g~~~a~l~~~v~~~~~eia~~E~~HV~~L~~aLg 81 (273)
.+..+.|-+|.-.|.---.||...+. .-.+..++.++++++.||.+|++.|++-+.
T Consensus 112 ~~~~~~I~~a~~~E~~t~~~Y~~~~~-----------------------~~~~~~~~~~~~~~a~~E~~H~~~l~~~~~ 167 (176)
T COG1633 112 VSYLEAIEAAMEAEKDTIEFYEELLD-----------------------ELVNEEAKKLFKTIADDEKGHASGLLSLYN 167 (176)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH-----------------------HccCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567788999999999999999862 123577888999999999999999998664
No 36
>cd01046 Rubrerythrin_like rubrerythrin-like, diiron-binding domain. Rubrerythrin-like domain, similar to rubrerythrin, a nonheme iron binding domain found in many air-sensitive bacteria and archaea, and member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Rubrerythrin is thought to reduce hydrogen peroxide as part of an oxidative stress protection system. The rubrerythrin protein has two domains, a binuclear metal center located within a four-helix bundle of the rubrerythrin domain, and a rubredoxin domain. The Rubrerythrin-like domains in this CD are singular domains (no C-terminus rubredoxin domain) and are phylogenetically distinct from rubrerythrin domains of rubrerythrin-rubredoxin proteins.
Probab=62.30 E-value=22 Score=29.04 Aligned_cols=58 Identities=22% Similarity=0.028 Sum_probs=45.1
Q ss_pred ccchhhhhHHhHHHHHHHHHHhhhhCCCccccCCcccCCCCCCccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 036999 4 SDVDLLEFPLNLEYLEAEFFLFGSLGYGLDKVAPNLTLGGPAPLGAKKANLDPLTKDLVLQFAWQEVGHLKAIKKTVK 81 (273)
Q Consensus 4 ~D~diLNFALnLEyLEa~FY~~a~~g~gl~~~~~~l~~ggp~~~g~~~a~l~~~v~~~~~eia~~E~~HV~~L~~aLg 81 (273)
+-.++|+-++..|.-+..-|...+. . ++.- =+..+.+.+..++.+|..|++.++.+|.
T Consensus 63 ~~~~~le~a~~~E~~~~~~~~~~~~-----~--------------A~~e-gd~~~~~~~~~~~~~E~~H~~~~~~~l~ 120 (123)
T cd01046 63 DTKENLEMMLEGEAGANEGKKDAAT-----E--------------AKAE-GLDEAHDFFHEAAKDEARHGKMLKGLLE 120 (123)
T ss_pred cHHHHHHHHHHhHHHHHHhHHHHHH-----H--------------HHHc-CCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4468999999999999988865541 0 0111 1578999999999999999999998874
No 37
>PRK13654 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional
Probab=60.59 E-value=12 Score=36.54 Aligned_cols=55 Identities=16% Similarity=0.218 Sum_probs=50.2
Q ss_pred HHHHHHHhhcchhhHHhhccccccCC--ChhHHHHHHhHHHhhhhhHHHHHHHHHHh
Q 036999 118 INYLIASYLIPYVGLTGYVGANPNLQ--NAISKRLVAGLLGVESGQDAVIRAFLYEK 172 (273)
Q Consensus 118 ~~FL~~A~~~E~vGvtAY~Gaap~l~--~~~~l~~Aa~Il~VEA~Haa~IR~lL~~~ 172 (273)
.+||.-|-+=|--|---|+=....|+ ||.+.+.-.=+.-.||||++.|+-.+..-
T Consensus 85 idFLerSctaEFSGflLYKEl~rrlk~~nP~lae~F~lMaRDEARHAGFlNkam~df 141 (355)
T PRK13654 85 IDFLERSCTAEFSGFLLYKELSRRLKDRNPLLAELFQLMARDEARHAGFLNKAMKDF 141 (355)
T ss_pred HHHHHHHhhhhhhhHHHHHHHHHhccccCcHHHHHHHHHhhhHHHHhhhHHHHHHHc
Confidence 47999999999999999999999998 99999998889999999999999887763
No 38
>cd01047 ACSF Aerobic Cyclase System Fe-containing subunit (ACSF), ferritin-like diiron-binding domain. Aerobic Cyclase System, Fe-containing subunit (ACSF) is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Rubrivivax gelatinosus acsF codes for a conserved, putative binuclear iron-cluster-containing protein involved in aerobic oxidative cyclization of Mg-protoporphyrin IX monomethyl ester. AcsF and homologs have a leucine zipper and two copies of the conserved glutamate and histidine residues predicted to act as ligands for iron in the Ex(29-35)DExRH motifs. Several homologs of AcsF are found in a wide range of photosynthetic organisms, including Chlamydomonas reinhardtii Crd1 and Pharbitis nil PNZIP, suggesting that this aerobic oxidative cyclization mechanism is conserved from bacteria to plants.
Probab=59.04 E-value=13 Score=35.97 Aligned_cols=55 Identities=16% Similarity=0.208 Sum_probs=49.4
Q ss_pred HHHHHHHhhcchhhHHhhccccccCCC--hhHHHHHHhHHHhhhhhHHHHHHHHHHh
Q 036999 118 INYLIASYLIPYVGLTGYVGANPNLQN--AISKRLVAGLLGVESGQDAVIRAFLYEK 172 (273)
Q Consensus 118 ~~FL~~A~~~E~vGvtAY~Gaap~l~~--~~~l~~Aa~Il~VEA~Haa~IR~lL~~~ 172 (273)
.+||.-|-+=|--|---|+=....++| |.+.+.-.=+.-.||||++.|+-.+..-
T Consensus 65 idFLerSctaEFSGflLYKEl~rrlk~~nP~lae~F~lMaRDEARHAGFlNkam~df 121 (323)
T cd01047 65 LEFLERSCTSEFSGFLLYKELGRRLKNTNPVVAELFRLMARDEARHAGFLNKALSDF 121 (323)
T ss_pred HHHHHHHhhhhhhhHHHHHHHHHHcccCCcHHHHHHHHHhhhHHHHhhhHHHHHHHc
Confidence 479999999999999999999999966 8888888888899999999999887763
No 39
>PRK10635 bacterioferritin; Provisional
Probab=55.86 E-value=42 Score=28.88 Aligned_cols=56 Identities=18% Similarity=0.228 Sum_probs=46.6
Q ss_pred chhhhhHHhHHHHHHHHHHhhhhCCCccccCCcccCCCCCCccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 036999 6 VDLLEFPLNLEYLEAEFFLFGSLGYGLDKVAPNLTLGGPAPLGAKKANLDPLTKDLVLQFAWQEVGHLKAIKKTVK 81 (273)
Q Consensus 6 ~diLNFALnLEyLEa~FY~~a~~g~gl~~~~~~l~~ggp~~~g~~~a~l~~~v~~~~~eia~~E~~HV~~L~~aLg 81 (273)
.++|...|.+|+=-.+-|..++.= + ...-|...++++++|-.+|..|...|++.|+
T Consensus 84 ~eml~~dl~~E~~ai~~y~e~i~~----------a----------~~~~D~~s~~ll~~iL~dEe~H~~~le~~l~ 139 (158)
T PRK10635 84 EEMLRSDLRLELEGAKDLREAIAY----------A----------DSVHDYVSRDMMIEILADEEGHIDWLETELD 139 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----------H----------HHcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678999999999888999998630 0 1124788999999999999999999999886
No 40
>cd00907 Bacterioferritin Bacterioferritin, ferritin-like diiron-binding domain. Bacterioferritins, also known as cytochrome b1, are members of a broad superfamily of ferritin-like diiron-carboxylate proteins. Similar to ferritin in architecture, Bfr forms an oligomer of 24 subunits that assembles to form a hollow sphere with 432 symmetry. Up to 12 heme cofactor groups (iron protoporphyrin IX or coproporphyrin III) are bound between dimer pairs. The role of the heme is unknown, although it may be involved in mediating iron-core reduction and iron release. Each subunit is composed of a four-helix bundle which carries a diiron ferroxidase center; it is here that initial oxidation of ferrous iron by molecular oxygen occurs, facilitating the detoxification of iron, protection against dioxygen and radical products, and storage of ferric-hydroxyphosphate at the core. Some bacterioferritins are composed of two subunit types, one conferring heme-binding ability (alpha) and the other (beta) best
Probab=55.78 E-value=37 Score=27.82 Aligned_cols=58 Identities=19% Similarity=0.157 Sum_probs=46.8
Q ss_pred ccchhhhhHHhHHHHHHHHHHhhhhCCCccccCCcccCCCCCCccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 036999 4 SDVDLLEFPLNLEYLEAEFFLFGSLGYGLDKVAPNLTLGGPAPLGAKKANLDPLTKDLVLQFAWQEVGHLKAIKKTVK 81 (273)
Q Consensus 4 ~D~diLNFALnLEyLEa~FY~~a~~g~gl~~~~~~l~~ggp~~~g~~~a~l~~~v~~~~~eia~~E~~HV~~L~~aLg 81 (273)
+..++|..++..|.--.+-|.....- + ...-|+.+.++++.|..+|..|..+|++.++
T Consensus 81 ~~~~~l~~~l~~E~~~~~~y~~~~~~----------A----------~~~~D~~t~~~l~~~~~~e~~h~~~l~~~l~ 138 (153)
T cd00907 81 DVPEMLENDLALEYEAIAALNEAIAL----------C----------EEVGDYVSRDLLEEILEDEEEHIDWLETQLD 138 (153)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHH----------H----------HHcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788999999999888999887410 0 1124788999999999999999999999876
No 41
>PF09537 DUF2383: Domain of unknown function (DUF2383); InterPro: IPR019052 This entry represents a functionally uncharacterised ferritin like domain.; PDB: 3FSE_B.
Probab=53.72 E-value=55 Score=25.64 Aligned_cols=104 Identities=20% Similarity=0.179 Sum_probs=50.8
Q ss_pred chhhhhHHhHHHHHHHHHHhhhhCCCccccCCcccCCCCCCccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhc-CCC
Q 036999 6 VDLLEFPLNLEYLEAEFFLFGSLGYGLDKVAPNLTLGGPAPLGAKKANLDPLTKDLVLQFAWQEVGHLKAIKKTVK-GFP 84 (273)
Q Consensus 6 ~diLNFALnLEyLEa~FY~~a~~g~gl~~~~~~l~~ggp~~~g~~~a~l~~~v~~~~~eia~~E~~HV~~L~~aLg-av~ 84 (273)
++.||=.|..+|=-.+.|..++. + +. ++..+.++++++.+...|+.-|+..|. -..
T Consensus 3 i~~Ln~Ll~~~~d~~~~Y~~a~~-----~-----------------~~-~~~lk~~f~~~~~~~~~~~~~L~~~i~~~Gg 59 (111)
T PF09537_consen 3 IEALNDLLKGLHDGIEGYEKAAE-----K-----------------AE-DPELKSLFQEFAQERQQHAEELQAEIQELGG 59 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-----H--------------------SHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----H-----------------CC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 57899999999999999999973 1 11 689999999999999999999999987 223
Q ss_pred CccccCCcchHHHHHHHhcCCCCCCCCCCCCChHH-HHHHHhhcchhhHHhhccc
Q 036999 85 RPLLDLSAGSFAKVIDKAFGKPLNPPFDPYANSIN-YLIASYLIPYVGLTGYVGA 138 (273)
Q Consensus 85 ~P~id~s~~~F~~~~~~A~g~~l~p~FdPy~n~~~-FL~~A~~~E~vGvtAY~Ga 138 (273)
.|.-+ ++|...+..+.- .+.--|. .++.. +|..+.-=|+.++.+|.=+
T Consensus 60 ~p~~~---gs~~g~~~r~~~-~ik~~~~--~~d~~aiL~~~~~gE~~~~~~y~~a 108 (111)
T PF09537_consen 60 EPEES---GSFKGALHRAWM-DIKSALG--GDDDEAILEECERGEDMALEAYEDA 108 (111)
T ss_dssp -H-------HHCHHHH-TTT-HHHHS-------H---------------------
T ss_pred CcCcc---cCHHHHHHHHHH-HHHHHhc--CCCccchhhhhhhhhhhhhhhcccc
Confidence 34322 233333333310 0000010 23333 6666766788888877644
No 42
>CHL00185 ycf59 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional
Probab=52.95 E-value=18 Score=35.30 Aligned_cols=55 Identities=11% Similarity=0.137 Sum_probs=49.1
Q ss_pred HHHHHHHhhcchhhHHhhccccccCCC--hhHHHHHHhHHHhhhhhHHHHHHHHHHh
Q 036999 118 INYLIASYLIPYVGLTGYVGANPNLQN--AISKRLVAGLLGVESGQDAVIRAFLYEK 172 (273)
Q Consensus 118 ~~FL~~A~~~E~vGvtAY~Gaap~l~~--~~~l~~Aa~Il~VEA~Haa~IR~lL~~~ 172 (273)
.+||.-|-+=|--|---|+=....|+| |.+.+.-.=+.-.||||++.|+-.+..-
T Consensus 81 idFLerScTaEFSGflLYKEl~rrlk~~nP~lae~F~lMaRDEARHAGFlNkam~df 137 (351)
T CHL00185 81 VEFLERSCTAEFSGFLLYKELSRKLKDKNPLLAEGFLLMSRDEARHAGFLNKAMSDF 137 (351)
T ss_pred HHHHHHHhhhhhhhhHHHHHHHHHhccCCcHHHHHHHHHhhhhHHHhhhHHHHHHHc
Confidence 479999999999999999999999955 8888888888889999999999887763
No 43
>TIGR02029 AcsF magnesium-protoporphyrin IX monomethyl ester aerobic oxidative cyclase. This model respresents the oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under aerobic conditions. This enzyme is believed to utilize a binuclear iron center and molecular oxygen. There are two isoforms of this enzyme in some plants and cyanobacterai which are differentially regulated based on the levels of copper and oxygen. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under aerobic conditions (a separate enzyme, BchE, acts under anaerobic conditions). This enzyme is found in plants, cyanobacteria and other photosynthetic bacteria.
Probab=52.45 E-value=18 Score=35.15 Aligned_cols=55 Identities=18% Similarity=0.161 Sum_probs=48.1
Q ss_pred HHHHHHHhhcchhhHHhhccccccCCChh--HHHHHHhHHHhhhhhHHHHHHHHHHh
Q 036999 118 INYLIASYLIPYVGLTGYVGANPNLQNAI--SKRLVAGLLGVESGQDAVIRAFLYEK 172 (273)
Q Consensus 118 ~~FL~~A~~~E~vGvtAY~Gaap~l~~~~--~l~~Aa~Il~VEA~Haa~IR~lL~~~ 172 (273)
.+||.-|-+=|--|---|+=....|+|++ +.+.-.=+.-.||||++.|+-.+..-
T Consensus 75 idFLerScTaEFSGflLYKEl~rrlk~~~P~lae~F~~MaRDEARHAGFlNkam~df 131 (337)
T TIGR02029 75 IEFLERSCTSEFSGFLLYKELSRRLKNRDPVVAELFQLMARDEARHAGFLNKALGDF 131 (337)
T ss_pred HHHHHHHhhhhhhhhHHHHHHHHhcCCCChHHHHHHHHHhhhhHHHhhhHHHHHHHc
Confidence 47999999999999999999999996555 88888888889999999999887763
No 44
>PLN02508 magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase
Probab=51.17 E-value=17 Score=35.50 Aligned_cols=55 Identities=15% Similarity=0.198 Sum_probs=49.0
Q ss_pred HHHHHHHhhcchhhHHhhccccccCCC--hhHHHHHHhHHHhhhhhHHHHHHHHHHh
Q 036999 118 INYLIASYLIPYVGLTGYVGANPNLQN--AISKRLVAGLLGVESGQDAVIRAFLYEK 172 (273)
Q Consensus 118 ~~FL~~A~~~E~vGvtAY~Gaap~l~~--~~~l~~Aa~Il~VEA~Haa~IR~lL~~~ 172 (273)
.+||.-|-+=|--|---|+=....|+| |.+.+.-.=+.-.||||++.|+-.+..-
T Consensus 81 idFLerSctaEFSGflLYKEl~rrlk~~nP~lae~F~lMaRDEARHAGFlNkam~Df 137 (357)
T PLN02508 81 IEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFTLMSRDEARHAGFLNKALSDF 137 (357)
T ss_pred HHHHHhhhhhhcccchHHHHHHHhcccCChHHHHHHHHhCchhHHHHhHHHHHHHHc
Confidence 479999999999999999999999955 8888888888889999999999887763
No 45
>cd01055 Nonheme_Ferritin nonheme-containing ferritins. Nonheme Ferritin domain, found in archaea and bacteria, is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The ferritin protein shell is composed of 24 protein subunits arranged in 432 symmetry. Each protein subunit, a four-helix bundle with a fifth short terminal helix, contains a dinuclear ferroxidase center (H type). Unique to this group of proteins is a third metal site in the ferroxidase center. Iron storage involves the uptake of iron (II) at the protein shell, its oxidation by molecular oxygen at the ferroxidase centers, and the movement of iron (III) into the cavity for deposition as ferrihydrite.
Probab=47.83 E-value=46 Score=27.52 Aligned_cols=57 Identities=14% Similarity=-0.011 Sum_probs=46.1
Q ss_pred cchhhhhHHhHHHHHHHHHHhhhhCCCccccCCcccCCCCCCccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 036999 5 DVDLLEFPLNLEYLEAEFFLFGSLGYGLDKVAPNLTLGGPAPLGAKKANLDPLTKDLVLQFAWQEVGHLKAIKKTVK 81 (273)
Q Consensus 5 D~diLNFALnLEyLEa~FY~~a~~g~gl~~~~~~l~~ggp~~~g~~~a~l~~~v~~~~~eia~~E~~HV~~L~~aLg 81 (273)
-.++|.-+|++|.--.+-|.....= + ...-|+.+.+++++|..+|+.|++-+++.+.
T Consensus 81 ~~~~l~~al~~E~~~~~~~~~l~~~----------A----------~~~~D~~~~~~l~~~l~~q~e~~~~~~~~l~ 137 (156)
T cd01055 81 LLEVFEAALEHEQKVTESINNLVDL----------A----------LEEKDYATFNFLQWFVKEQVEEEALARDILD 137 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----------H----------HHcCCHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3588999999999988998887520 0 1123688999999999999999999999887
No 46
>PF00210 Ferritin: Ferritin-like domain; InterPro: IPR008331 Ferritin is one of the major non-haem iron storage proteins in animals, plants, and microorganisms []. It consists of a mineral core of hydrated ferric oxide, and a multi-subunit protein shell that encloses the former and assures its solubility in an aqueous environment. In animals the protein is mainly cytoplasmic and there are generally two or more genes that encode closely related subunits - in mammals there are two subunits which are known as H(eavy) and L(ight). In plants ferritin is found in the chloroplast []. This entry represents the main structural domain of ferritin. The domain is also found in other ferritin-like proteins such as members of the DNA protection during starvation (DPS) family and bacterioferritins.; GO: 0008199 ferric iron binding, 0006879 cellular iron ion homeostasis; PDB: 1N1Q_C 4DYU_E 2YJJ_D 2YJK_B 2VXX_B 3FVB_A 2WLU_A 2XGW_A 2WLA_A 1Z4A_D ....
Probab=46.96 E-value=58 Score=25.52 Aligned_cols=58 Identities=21% Similarity=0.098 Sum_probs=46.7
Q ss_pred ccchhhhhHHhHHHHHHHHHHhhhhCCCccccCCcccCCCCCCccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 036999 4 SDVDLLEFPLNLEYLEAEFFLFGSLGYGLDKVAPNLTLGGPAPLGAKKANLDPLTKDLVLQFAWQEVGHLKAIKKTVK 81 (273)
Q Consensus 4 ~D~diLNFALnLEyLEa~FY~~a~~g~gl~~~~~~l~~ggp~~~g~~~a~l~~~v~~~~~eia~~E~~HV~~L~~aLg 81 (273)
+-.++|..+|..|.--.+.|.....- + ...-|+.+.+++.++-.+|..|++.|++.|.
T Consensus 80 ~~~~~l~~~l~~e~~~~~~~~~l~~~----------a----------~~~~D~~t~~~~~~~l~~~~~~~~~l~~~l~ 137 (142)
T PF00210_consen 80 DPREALEAALEDEKEIIEEYRELIKL----------A----------EKEGDPETADFLDEFLEEEEKHIWMLQAHLT 137 (142)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHH----------H----------HHTTSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHH----------H----------HhcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34678999999999999999887621 0 0113789999999999999999999998775
No 47
>cd01051 Mn_catalase Manganese catalase, ferritin-like diiron-binding domain. Manganese (Mn) catalase is a member of a broad superfamily of ferritin-like diiron enzymes. While many diiron enzymes catalyze dioxygen-dependent reactions, manganese catalase performs peroxide-dependent oxidation-reduction. Catalases are important antioxidant metalloenzymes that catalyze disproportionation of hydrogen peroxide, forming dioxygen and water. Manganese catalase, a nonheme type II catalase, contains a binuclear manganese cluster that catalyzes the redox dismutation of hydrogen peroxide, interconverting between dimanganese(II) [(2,2)] and dimanganese(III) [(3,3)] oxidation states during turnover. Mn catalases are found in a broad range of microorganisms in microaerophilic environments, including the mesophilic lactic acid bacteria (e.g., Lactobacillus plantarum) and bacterial and archaeal thermophiles (e.g., Thermus thermophilus and Pyrobaculum caldifontis). L. plantarum and T. thermophilus holoenz
Probab=43.72 E-value=91 Score=26.78 Aligned_cols=53 Identities=21% Similarity=0.060 Sum_probs=43.8
Q ss_pred chhhhhHHhHHHHHHHHHHhhhhCCCccccCCcccCCCCCCccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 036999 6 VDLLEFPLNLEYLEAEFFLFGSLGYGLDKVAPNLTLGGPAPLGAKKANLDPLTKDLVLQFAWQEVGHLKAIKKTVK 81 (273)
Q Consensus 6 ~diLNFALnLEyLEa~FY~~a~~g~gl~~~~~~l~~ggp~~~g~~~a~l~~~v~~~~~eia~~E~~HV~~L~~aLg 81 (273)
+.+|...+..|.--..-|.+-.. .. -|+.+++++..|..+|..|...++++|.
T Consensus 101 ~~~L~~ni~aE~~Ai~~Y~~l~~----------------------~~-~Dp~v~~~l~~I~~rE~~H~~~f~~~l~ 153 (156)
T cd01051 101 VADLRSNIAAESRARLTYERLYE----------------------MT-DDPGVKDTLSFLLVREIVHQNAFGKALE 153 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----------------------Hc-CCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778888899888888888652 11 1799999999999999999999999875
No 48
>PF03232 COQ7: Ubiquinone biosynthesis protein COQ7; InterPro: IPR011566 Coq7 (also known as Clk-1) is a di-iron carboxylate protein occuring in both prokaryotes and eukaryotes that is essential for ubiquinone biosynthesis [, ]. It has been implicated in the aging process as mutations in the Caenorhabditis elegans gene lead to increased lifespan []. Coq7 is a membrane-bound protein that functions as a monooxygenase to hydroxylate demethoxyubiquinone (2-methoxy-5-methyl-6-polyprenyl-1,4-benzoquinone) in the penultimate step of ubiquinone biosynthesis []. Biochemical studies indicate that NADH can serve directly as a reductant for catalytic activation of dioxygen and substrate oxidation by the enzyme, with no requirement for an additional reductase protein component []. This direct reaction with NADH is so far unique amongst members of the di-iron carboxylate protein family. This entry is specific for the bacterial Coq7 proteins.; GO: 0006744 ubiquinone biosynthetic process, 0055114 oxidation-reduction process
Probab=42.04 E-value=60 Score=28.56 Aligned_cols=51 Identities=12% Similarity=0.001 Sum_probs=44.5
Q ss_pred HHhhcchhhHHhhccccccCC-ChhHHHHHHhHHHhhhhhHHHHHHHHHHhh
Q 036999 123 ASYLIPYVGLTGYVGANPNLQ-NAISKRLVAGLLGVESGQDAVIRAFLYEKA 173 (273)
Q Consensus 123 ~A~~~E~vGvtAY~Gaap~l~-~~~~l~~Aa~Il~VEA~Haa~IR~lL~~~~ 173 (273)
.-..-|.-.+.-|.|+...+. ++..+.....++..|..|-.+++.+|.+++
T Consensus 9 VdHAGE~~A~~iY~gQ~~~~~~~~~~~~~l~~~~~~E~~Hl~~f~~~l~~~~ 60 (172)
T PF03232_consen 9 VDHAGEVGAVRIYRGQLAVARRDPELRPFLKEMAEEEKDHLAWFEQLLPELR 60 (172)
T ss_pred HhHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhHHcC
Confidence 334446666788999999999 999999999999999999999999999975
No 49
>PF04305 DUF455: Protein of unknown function (DUF455); InterPro: IPR007402 This is a family of uncharacterised proteins.
Probab=41.85 E-value=45 Score=31.14 Aligned_cols=57 Identities=19% Similarity=0.291 Sum_probs=38.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCCccccCCcchHHHHHHHhcCCCCCCCCC
Q 036999 55 DPLTKDLVLQFAWQEVGHLKAIKKTVK-GFPRPLLDLSAGSFAKVIDKAFGKPLNPPFD 112 (273)
Q Consensus 55 ~~~v~~~~~eia~~E~~HV~~L~~aLg-av~~P~id~s~~~F~~~~~~A~g~~l~p~Fd 112 (273)
|....++++.|-.+|++||++=.+=+. -..+...|-- ..|-.+++.-+...+.+|||
T Consensus 180 D~~sa~iL~~I~~DEi~HV~~G~rWf~~~c~~~~~~p~-~~f~~lv~~~~~~~~k~pfN 237 (253)
T PF04305_consen 180 DEESAAILEIILRDEIGHVAIGNRWFRYLCEQRGLDPW-ETFRELVRQYFRGKLKGPFN 237 (253)
T ss_pred CHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHH-HHHHHHHHHhCCCCCCCCCC
Confidence 567889999999999999987544443 2222222211 35888887777777788886
No 50
>cd01044 Ferritin_CCC1_N Ferritin-CCC1, N-terminal ferritin-like diiron-binding domain. Ferritin-like N-terminal domain present in an uncharacterized family of proteins found in bacteria and archaea. These proteins also have a C-terminal CCC1-like transmembrane domain and are thought to be involved in iron and/or manganese transport. This domain has the conserved residues of a diiron center found in other ferritin-like proteins.
Probab=41.81 E-value=48 Score=26.80 Aligned_cols=55 Identities=11% Similarity=0.021 Sum_probs=48.8
Q ss_pred HHHHhhcchhhHHhhccccccCCChhHHHHHHhHHHhhhhhHHHHHHHHHHhhhc
Q 036999 121 LIASYLIPYVGLTGYVGANPNLQNAISKRLVAGLLGVESGQDAVIRAFLYEKANE 175 (273)
Q Consensus 121 L~~A~~~E~vGvtAY~Gaap~l~~~~~l~~Aa~Il~VEA~Haa~IR~lL~~~~~~ 175 (273)
+...+..|.-|..-|.-.+...+++..++.--.|...|-.|.-+++.++.+.+..
T Consensus 3 ~~~~~~~E~~~~~~Y~~la~~~~~~~~k~~f~~lA~~E~~H~~~~~~~~~~~~~~ 57 (125)
T cd01044 3 LRKFQKDEITEAAIYRKLAKREKDPENREILLKLAEDERRHAEFWKKFLGKRGVP 57 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 4456678889999999999999999999999999999999999999999887644
No 51
>PF11220 DUF3015: Protein of unknown function (DUF3015); InterPro: IPR021383 This bacterial family of proteins has no known function.
Probab=39.75 E-value=62 Score=27.88 Aligned_cols=65 Identities=18% Similarity=0.126 Sum_probs=48.1
Q ss_pred HHhhcchhhHHhhccccccCCChhHHHHHHhHHHhhhhhHHHHHHHHHHhhhcccCCCcccHHHHHHHHHH
Q 036999 123 ASYLIPYVGLTGYVGANPNLQNAISKRLVAGLLGVESGQDAVIRAFLYEKANEKVHPYGIRVAEFTNKISQ 193 (273)
Q Consensus 123 ~A~~~E~vGvtAY~Gaap~l~~~~~l~~Aa~Il~VEA~Haa~IR~lL~~~~~~~v~Py~~tV~~~t~~IS~ 193 (273)
....++.+--=.-.|- =++|.+.+.+++|++.|.+.++..+.++-....+.-.+|-.++.++|-+
T Consensus 67 i~~n~d~La~DiA~G~------GE~L~ala~llgv~~~d~~~f~~~~q~nF~~if~s~~~t~~~v~~~i~~ 131 (144)
T PF11220_consen 67 INSNMDNLAQDIARGQ------GEHLDALAELLGVPAEDRAAFGAVLQENFASIFPSESVTSEEVLDNIVA 131 (144)
T ss_pred HHHHHHHHHHHHHcCC------cchHHHHHHHhCCCHhhHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHH
Confidence 3445555555555554 3578999999999999999999999999888777667777766666544
No 52
>COG2941 CAT5 Ubiquinone biosynthesis protein COQ7 [Coenzyme metabolism]
Probab=38.30 E-value=58 Score=29.65 Aligned_cols=33 Identities=21% Similarity=0.198 Sum_probs=26.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCCcc
Q 036999 55 DPLTKDLVLQFAWQEVGHLKAIKKTVK-GFPRPL 87 (273)
Q Consensus 55 ~~~v~~~~~eia~~E~~HV~~L~~aLg-av~~P~ 87 (273)
++..+-.++|.++||+.|.....+-|- --.||.
T Consensus 69 ~~~~R~~l~em~d~E~~HL~~f~~~l~e~~vRPs 102 (204)
T COG2941 69 SPEPRIQLKEMADEEIDHLAWFEQRLLELGVRPS 102 (204)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHccCCcc
Confidence 456677899999999999999988775 445664
No 53
>PF12902 Ferritin-like: Ferritin-like; PDB: 3HL1_A.
Probab=38.23 E-value=1.2e+02 Score=27.74 Aligned_cols=61 Identities=18% Similarity=0.271 Sum_probs=41.6
Q ss_pred hhhHHhHHHHHHHHHHhhhhCCCccccCCcccCCCCCCccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhcCCC-Ccc
Q 036999 9 LEFPLNLEYLEAEFFLFGSLGYGLDKVAPNLTLGGPAPLGAKKANLDPLTKDLVLQFAWQEVGHLKAIKKTVKGFP-RPL 87 (273)
Q Consensus 9 LNFALnLEyLEa~FY~~a~~g~gl~~~~~~l~~ggp~~~g~~~a~l~~~v~~~~~eia~~E~~HV~~L~~aLgav~-~P~ 87 (273)
||-|+.||+-=---|+.|.+- +. ...+..++..+++|+-+|.-|.....+.|.++. +|.
T Consensus 1 Lq~Ai~lE~atip~YL~a~yS--i~------------------~~~~~~~~~~i~~V~~eEMlHl~l~~Nll~alGg~P~ 60 (227)
T PF12902_consen 1 LQQAIELELATIPPYLTALYS--IK------------------PGTNEEARNLIRSVAIEEMLHLSLAANLLNALGGSPR 60 (227)
T ss_dssp -HHHHHHHHHHHHHHHHHHHH--BS-------------------TTSH-HHHHHHHHHHHHHHHHHHHHHHHHHTT----
T ss_pred CcHHHHHHHHHHHHHHHHHcc--cC------------------CCcchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCc
Confidence 678999999888999998752 21 122355899999999999999999887766332 255
Q ss_pred cc
Q 036999 88 LD 89 (273)
Q Consensus 88 id 89 (273)
++
T Consensus 61 l~ 62 (227)
T PF12902_consen 61 LT 62 (227)
T ss_dssp --
T ss_pred cc
Confidence 54
No 54
>PF11583 AurF: P-aminobenzoate N-oxygenase AurF; PDB: 3CHI_B 3CHT_A 3CHH_A 2JCD_B 3CHU_A.
Probab=34.72 E-value=39 Score=31.33 Aligned_cols=111 Identities=12% Similarity=0.112 Sum_probs=62.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhhc--C----CCC-ccccCCcchHHHHHHHhcCCCCCCCCCCCCChHHHHHHHhh
Q 036999 54 LDPLTKDLVLQFAWQEVGHLKAIKKTVK--G----FPR-PLLDLSAGSFAKVIDKAFGKPLNPPFDPYANSINYLIASYL 126 (273)
Q Consensus 54 l~~~v~~~~~eia~~E~~HV~~L~~aLg--a----v~~-P~id~s~~~F~~~~~~A~g~~l~p~FdPy~n~~~FL~~A~~ 126 (273)
.+...+.++.+.-.+|.-|+.+..+.+. + ++. |.. ..+....+.... -+.+.....-++..+.+
T Consensus 110 ~~~~~~~~~~~~i~DE~rH~~mf~~~~~~~~~~~~l~~~~~~----~~~~~~~~~l~~-----~~~~~~~~~~~~~~~lv 180 (304)
T PF11583_consen 110 PDDDAKRYALTEIADEARHSLMFARAINRTGRRRGLAPLPPP----YPPRRLLRRLAR-----LLPPWERGLLFFAFALV 180 (304)
T ss_dssp T-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT----S------HHHHHHHHHHHT-----S-SHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccCCCC----CchHHHHHHHHH-----hcccccchHHHHHHHHH
Confidence 3567778888888899999998888765 2 111 110 122222222211 12222334456677777
Q ss_pred cchhhHHhhccccccC--CChhHHHHHHhHHHhhhhhHHHHHHHHHHhhh
Q 036999 127 IPYVGLTGYVGANPNL--QNAISKRLVAGLLGVESGQDAVIRAFLYEKAN 174 (273)
Q Consensus 127 ~E~vGvtAY~Gaap~l--~~~~~l~~Aa~Il~VEA~Haa~IR~lL~~~~~ 174 (273)
.|.+ ++.|.-....= ..|-+++...-.+..|+||.++-|..+...-.
T Consensus 181 ~Ee~-i~~~~~~~~~D~~iqP~~r~v~~iH~~DEaRHi~f~~~~l~~~~~ 229 (304)
T PF11583_consen 181 AEEI-IDAYQREIARDETIQPLVRQVMRIHVRDEARHIAFAREELRRVWP 229 (304)
T ss_dssp HHHS-BHHHHHHHHT-SSS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH-HHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7776 56666432221 13445555555566799999999998876543
No 55
>PF11553 DUF3231: Protein of unknown function (DUF3231); InterPro: IPR021617 This bacterial family of proteins has no known function. ; PDB: 2RBD_B.
Probab=33.96 E-value=2.9e+02 Score=23.32 Aligned_cols=87 Identities=21% Similarity=0.214 Sum_probs=52.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhhc--CCCCcc----ccCCcchHHHHHHHhcCCCCCCCCCCCCChHHHHHHHhhcc
Q 036999 55 DPLTKDLVLQFAWQEVGHLKAIKKTVK--GFPRPL----LDLSAGSFAKVIDKAFGKPLNPPFDPYANSINYLIASYLIP 128 (273)
Q Consensus 55 ~~~v~~~~~eia~~E~~HV~~L~~aLg--av~~P~----id~s~~~F~~~~~~A~g~~l~p~FdPy~n~~~FL~~A~~~E 128 (273)
|+.++.++++....-..|++.|++.+. ++|-|. -|.... + .++| +|...+.--+.+-
T Consensus 45 D~dik~~l~~~~~~~~~~i~~l~~ll~~e~ip~P~~~~~~~v~~~--------~-----~~lf----sD~~~l~~~~~~~ 107 (166)
T PF11553_consen 45 DKDIKKLLKKGLDLSQKQIEQLEKLLKEEGIPVPPGFPESDVTDS--------A-----PPLF----SDKFMLFYISFMS 107 (166)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHTT-------------GG--------G-----S-G------HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCcccccCCC--------C-----CCCC----CcHHHHHHHHHHH
Confidence 789999999999999999999999997 665553 122110 0 0123 4555555555666
Q ss_pred hhhHHhhccccccCCChhHHHHHHhHHHhh
Q 036999 129 YVGLTGYVGANPNLQNAISKRLVAGLLGVE 158 (273)
Q Consensus 129 ~vGvtAY~Gaap~l~~~~~l~~Aa~Il~VE 158 (273)
-.|+..|..+......++++..--..+.-+
T Consensus 108 ~~~~~~~~~al~~s~R~Dl~~~f~~~~~~~ 137 (166)
T PF11553_consen 108 QAGITNYGRALSSSVRNDLRAFFMKFLMEA 137 (166)
T ss_dssp HHHHHHHHHHHHH--SHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 789999988887777777666555544443
No 56
>PF01786 AOX: Alternative oxidase; InterPro: IPR002680 The alternative oxidase is used as a second terminal oxidase in the mitochondria, electrons are transferred directly from reduced ubiquinol to oxygen forming water []. This is not coupled to ATP synthesis and is not inhibited by cyanide, this pathway is a single step process []. In Oryza sativa (Rice) the transcript levels of the alternative oxidase are increased by low temperature []. It has been predicted to contain a coupled diiron centre on the basis of a conserved sequence motif consisting of the proposed iron ligands, four Glu and two His residues []. The EPR study of Arabidopsis thaliana (Mouse-ear cress) alternative oxidase AOX1a shows that the enzyme contains a hydroxo-bridged mixed-valent Fe(II)/Fe(III) binuclear iron centre []. A catalytic cycle has been proposed that involves diiron centre and at least one transient protein-derived radical, most probably an invariant Tyr residue [].; GO: 0007585 respiratory gaseous exchange, 0055114 oxidation-reduction process, 0005740 mitochondrial envelope
Probab=33.62 E-value=68 Score=29.22 Aligned_cols=56 Identities=20% Similarity=0.220 Sum_probs=35.4
Q ss_pred HHHHHHHH---HHhhhhCCCccccCCcccCCCCC-CccccccCCC---HHHHHHHHHHHHHHHHHHHH
Q 036999 15 LEYLEAEF---FLFGSLGYGLDKVAPNLTLGGPA-PLGAKKANLD---PLTKDLVLQFAWQEVGHLKA 75 (273)
Q Consensus 15 LEyLEa~F---Y~~a~~g~gl~~~~~~l~~ggp~-~~g~~~a~l~---~~v~~~~~eia~~E~~HV~~ 75 (273)
.+|||.+- |++.+ .+.+.+-...-|+ ++.-+.-+++ ..+++++..|+.||..|+..
T Consensus 139 vgylEeeAv~tYt~~l-----~di~~g~l~~~paP~iAi~Yw~l~~~~atlrDvi~~IRaDEa~Hr~v 201 (207)
T PF01786_consen 139 VGYLEEEAVHTYTEFL-----EDIDEGKLPNMPAPEIAIDYWGLPELDATLRDVILAIRADEAEHRDV 201 (207)
T ss_pred HHHHHHHHHHHHHHHH-----HHcccCCCCCCCCCHHHHHHhCCCccCchHHHHHHHHHhhHHHHHHh
Confidence 47888765 55554 3333332223443 3443444444 48999999999999999864
No 57
>cd01050 Acyl_ACP_Desat Acyl ACP desaturase, ferritin-like diiron-binding domain. Acyl-Acyl Carrier Protein Desaturase (Acyl_ACP_Desat) is a mu-oxo-bridged diiron-carboxylate enzyme, which belongs to a broad superfamily of ferritin-like proteins and catalyzes the NADPH and O2-dependent formation of a cis-double bond in acyl-ACPs. Acyl-ACP desaturases are found in higher plants and a few bacterial species (Mycobacterium tuberculosis, M. leprae, M. avium and Streptomyces avermitilis, S. coelicolor). In plants, Acyl-ACP desaturase is a plastid-localized, covalently ACP linked, soluble desaturase that introduces the first double bound into saturated fatty acids, resulting in the corresponding monounsaturated fatty acid. Members of this class of soluble desaturases are specific for a particular substrate chain length and introduce the double bond between specific carbon atoms. For example, delta 9 stearoyl-ACP is specific for stearic acid and introduces a double bond between carbon 9 and 1
Probab=32.24 E-value=4.6e+02 Score=25.12 Aligned_cols=106 Identities=15% Similarity=0.104 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc--CCCCccccCCcchHHHHHHHhcCCCCCCCCCCCC-ChHHHHHHHhhcchhhHH
Q 036999 57 LTKDLVLQFAWQEVGHLKAIKKTVK--GFPRPLLDLSAGSFAKVIDKAFGKPLNPPFDPYA-NSINYLIASYLIPYVGLT 133 (273)
Q Consensus 57 ~v~~~~~eia~~E~~HV~~L~~aLg--av~~P~id~s~~~F~~~~~~A~g~~l~p~FdPy~-n~~~FL~~A~~~E~vGvt 133 (273)
.....+..-...|..|=.+|++-|- +...|. .+.......++.. |+|-. ++.--..+...|-..+..
T Consensus 94 ~w~~w~~~WtaEE~rHg~aL~~YL~~sg~vdp~------~le~~~~~~~~~G----~~~~~~~~~~~~~~y~~fqE~aT~ 163 (297)
T cd01050 94 AWARWVRRWTAEENRHGDLLNKYLYLTGRVDPR------ALERTRQYLIGSG----FDPGTDNSPYRGFVYTSFQELATR 163 (297)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHhCC----CCCCCcccHHHHHHHHHHHHHHHH
Confidence 3445567788899999999998875 222222 2222223333433 44422 222112222236666666
Q ss_pred hhccccc-cC--CChhHHHHHHhHHHhhhhhHHHHHHHHHHh
Q 036999 134 GYVGANP-NL--QNAISKRLVAGLLGVESGQDAVIRAFLYEK 172 (273)
Q Consensus 134 AY~Gaap-~l--~~~~~l~~Aa~Il~VEA~Haa~IR~lL~~~ 172 (273)
.|.+... .. .+|...++..-|.+-|+||-..-+.++..-
T Consensus 164 v~y~nl~~~a~~gdPvL~~i~~~IA~DE~rH~~fy~~~v~~~ 205 (297)
T cd01050 164 ISHRNTARLAGAGDPVLAKLLGRIAADEARHEAFYRDIVEAL 205 (297)
T ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666443 44 578888999999999999999998877653
No 58
>TIGR00754 bfr bacterioferritin. Bacterioferritin is a homomultimer most species. In Neisseria gonorrhoeae, Synechocystis PCC6803, Magnetospirillum magnetotacticum, and Pseudomonas aeruginosa, two types of subunit are found in a heteromultimeric complex, with each species having one member of each type. At present, both types of subunit are including in this single model.
Probab=31.16 E-value=1.3e+02 Score=25.10 Aligned_cols=56 Identities=18% Similarity=0.145 Sum_probs=44.1
Q ss_pred chhhhhHHhHHHHHHHHHHhhhhCCCccccCCcccCCCCCCccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 036999 6 VDLLEFPLNLEYLEAEFFLFGSLGYGLDKVAPNLTLGGPAPLGAKKANLDPLTKDLVLQFAWQEVGHLKAIKKTVK 81 (273)
Q Consensus 6 ~diLNFALnLEyLEa~FY~~a~~g~gl~~~~~~l~~ggp~~~g~~~a~l~~~v~~~~~eia~~E~~HV~~L~~aLg 81 (273)
.++|..+|..|---.+.|.....= + ..--|..+.++++.|..+|..|+.+|++.|+
T Consensus 84 ~e~l~~~l~~E~~~~~~~~e~i~~----------A----------~~~~D~~t~~ll~~~i~eee~h~~~l~~~l~ 139 (157)
T TIGR00754 84 REMLEADLALELDVLNRLKEAIAY----------A----------EEVRDYVSRDLLEEILEDEEEHIDWLETQLE 139 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----------H----------HHcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888888888888888887520 0 0112688999999999999999999999886
No 59
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=30.40 E-value=34 Score=33.91 Aligned_cols=63 Identities=17% Similarity=0.186 Sum_probs=50.2
Q ss_pred CCCCCCChHHHHHHHhhc-c---hhhHHhhccccccCCC---hhHHHHHHhHHHhhhhhHHHHHHHHHHhh
Q 036999 110 PFDPYANSINYLIASYLI-P---YVGLTGYVGANPNLQN---AISKRLVAGLLGVESGQDAVIRAFLYEKA 173 (273)
Q Consensus 110 ~FdPy~n~~~FL~~A~~~-E---~vGvtAY~Gaap~l~~---~~~l~~Aa~Il~VEA~Haa~IR~lL~~~~ 173 (273)
.-|||.++.-|+-+|..- . .++||| ...+|+..+ +..++-.+.++-.|-+|..-+|.+++-..
T Consensus 126 DiDPFGSPaPFlDaA~~s~~~~G~l~vTA-TD~a~L~G~~p~~c~rkY~a~~~~~~~~hE~glR~Lig~va 195 (380)
T COG1867 126 DIDPFGSPAPFLDAALRSVRRGGLLCVTA-TDTAPLCGSYPRKCRRKYGAVPLKTEFCHEVGLRILIGYVA 195 (380)
T ss_pred ecCCCCCCchHHHHHHHHhhcCCEEEEEe-cccccccCCChHHHHHHhccccCCCcchhHHHHHHHHHHHH
Confidence 358999999999887543 3 366666 456677776 66889999999999999999999998543
No 60
>COG2193 Bfr Bacterioferritin (cytochrome b1) [Inorganic ion transport and metabolism]
Probab=29.38 E-value=1e+02 Score=27.07 Aligned_cols=58 Identities=19% Similarity=0.226 Sum_probs=45.6
Q ss_pred ccchhhhhHHhHHHHHHHHHHhhhhCCCccccCCcccCCCCCCccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 036999 4 SDVDLLEFPLNLEYLEAEFFLFGSLGYGLDKVAPNLTLGGPAPLGAKKANLDPLTKDLVLQFAWQEVGHLKAIKKTVK 81 (273)
Q Consensus 4 ~D~diLNFALnLEyLEa~FY~~a~~g~gl~~~~~~l~~ggp~~~g~~~a~l~~~v~~~~~eia~~E~~HV~~L~~aLg 81 (273)
+-.++|+-=|++||--.+-|..+.. .. -..-|...++++.+|-.+|-.|+.+|+..|+
T Consensus 82 tv~E~L~~DL~~E~~a~~~lk~~i~-----~~---------------e~~~Dyvsrdl~~~iL~deEEHid~LetqL~ 139 (157)
T COG2193 82 TVKEMLEADLALEYEARDALKEAIA-----YC---------------EEVQDYVSRDLLEEILADEEEHIDWLETQLD 139 (157)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHH-----HH---------------HhcccchHHHHHHHHHcchHHHHHHHHHHHH
Confidence 4468999999999988888888752 10 0112567899999999999999999999876
No 61
>PF13628 DUF4142: Domain of unknown function (DUF4142)
Probab=28.91 E-value=3.2e+02 Score=22.24 Aligned_cols=107 Identities=19% Similarity=0.120 Sum_probs=64.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhhc--CCCCccccCCcchHHHHHHHhcCCCCCCCCCCCCChHHHHHHHhhcchhh
Q 036999 54 LDPLTKDLVLQFAWQEVGHLKAIKKTVK--GFPRPLLDLSAGSFAKVIDKAFGKPLNPPFDPYANSINYLIASYLIPYVG 131 (273)
Q Consensus 54 l~~~v~~~~~eia~~E~~HV~~L~~aLg--av~~P~id~s~~~F~~~~~~A~g~~l~p~FdPy~n~~~FL~~A~~~E~vG 131 (273)
-++.|+++++.+..+...--.-|+.... ++.-|.-.++. .-...++.--+ .-++.|| ..||-.--.--.=-
T Consensus 29 ~~~~Vk~~A~~~~~dh~~~~~~l~~la~~~~v~lp~~~~~~-~~~~~l~~L~~-~~g~~FD-----~~yl~~~i~~h~~~ 101 (139)
T PF13628_consen 29 SSPEVKAFAQQMVEDHTQANQQLAALAAKKGVTLPPTALSA-EQQAELDRLQK-LSGSAFD-----RAYLDAQIKAHEKA 101 (139)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccH-hhHHHHHHHHc-CchhHHH-----HHHHHHHHHHHHHH
Confidence 3688999999998877766666665544 44444212221 11222222211 1112343 44555543333445
Q ss_pred HHhhcc-ccccCCChhHHHHHHhHHHhhhhhHHHHHH
Q 036999 132 LTGYVG-ANPNLQNAISKRLVAGLLGVESGQDAVIRA 167 (273)
Q Consensus 132 vtAY~G-aap~l~~~~~l~~Aa~Il~VEA~Haa~IR~ 167 (273)
+..|.. .++.-.|+.+++.|...+.+--.|-...|.
T Consensus 102 l~~~~~~~~~~~~~~~lk~~a~~~lp~l~~hl~~a~~ 138 (139)
T PF13628_consen 102 LALFEKQLAASGKDPELKAFAQETLPVLEAHLEMARA 138 (139)
T ss_pred HHHHHHHhhccCCCHHHHHHHHHHhHHHHHHHHHHhh
Confidence 677888 888889999999999888888888766654
No 62
>COG3546 Mn-containing catalase [Inorganic ion transport and metabolism]
Probab=28.57 E-value=5.3e+02 Score=24.68 Aligned_cols=115 Identities=19% Similarity=0.177 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc-----CCC-----CccccCCcc----hHHHHHHHhcCCCCCCCCC----CCC--
Q 036999 56 PLTKDLVLQFAWQEVGHLKAIKKTVK-----GFP-----RPLLDLSAG----SFAKVIDKAFGKPLNPPFD----PYA-- 115 (273)
Q Consensus 56 ~~v~~~~~eia~~E~~HV~~L~~aLg-----av~-----~P~id~s~~----~F~~~~~~A~g~~l~p~Fd----Py~-- 115 (273)
...++++..|+-.|.+|++.+-+.+. +.. .|.+.-.-. .+.. +.+... +|+| |++
T Consensus 52 ~~~~dll~DI~TEEl~HlEmvat~I~~L~~ga~~e~~~~~~l~~s~~~~~n~~h~~----~~~~g~-~p~dS~G~pWta~ 126 (277)
T COG3546 52 AKYKDLLMDIGTEELSHLEMVATMINLLNKGATGEGAEEAELYGSGLGGMNPHHIS----VLLYGA-GPADSAGVPWTAA 126 (277)
T ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCCCCCCcchhhHHhhccCCCchhhh----hhccCC-CCcccCCCccchh
Confidence 55899999999999999999998875 222 233221100 1111 111110 1122 111
Q ss_pred ------ChHHHHHHHhhcchhhHHhhccccccCCChhHHHHHHhHHHhhhhhHHHHHHHHHHhhhc
Q 036999 116 ------NSINYLIASYLIPYVGLTGYVGANPNLQNAISKRLVAGLLGVESGQDAVIRAFLYEKANE 175 (273)
Q Consensus 116 ------n~~~FL~~A~~~E~vGvtAY~Gaap~l~~~~~l~~Aa~Il~VEA~Haa~IR~lL~~~~~~ 175 (273)
|...=|..=...|--+-.-|.=..-+..||.++....=++.=|..|.-..+..|..-...
T Consensus 127 YI~~sGnliaDlr~NiaaE~~aR~~y~rLy~mtdDpgvrd~L~fLl~Re~~H~~~f~kAL~~l~~~ 192 (277)
T COG3546 127 YIVASGNLIADLRSNIAAEARARLQYERLYEMTDDPGVRDTLSFLLTREIAHQNAFRKALESLENE 192 (277)
T ss_pred hhhccCccHHHHHHHHHHHhccceeeeeeeecCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 111122333344556666777778888999999999999999999999988888765543
No 63
>cd07910 MiaE MiaE tRNA-modifying nonheme diiron monooxygenase, ferritin-like diiron-binding domain. MiaE is a nonheme diiron monooxygenase that catalyzes the posttranscriptional allylic hydroxylation of a modified nucleoside in tRNA called 2-methylthio-N-6-isopentenyl adenosine (ms2i6A). ms2i6A is found at position 37, next to the anticodon at the 3' position in almost all eukaryotic and bacterial tRNA's that read codons beginning with uridine. The miaE gene is absent in Escherichia coli, a finding consistent with the absence of the hydroxylated derivative of ms2i6A in this species.
Probab=28.52 E-value=4.4e+02 Score=23.68 Aligned_cols=110 Identities=20% Similarity=0.237 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc--CCCCccccCCcchHHHHHHHhcCCCCCCCCCCCCChHHHHHHHhhcchhhHH
Q 036999 56 PLTKDLVLQFAWQEVGHLKAIKKTVK--GFPRPLLDLSAGSFAKVIDKAFGKPLNPPFDPYANSINYLIASYLIPYVGLT 133 (273)
Q Consensus 56 ~~v~~~~~eia~~E~~HV~~L~~aLg--av~~P~id~s~~~F~~~~~~A~g~~l~p~FdPy~n~~~FL~~A~~~E~vGvt 133 (273)
+...+-+..++..|..|.+-.-+-+. +++- -..++....+-+.+..- +-.|..= .+-|+.+.++|.=+-=
T Consensus 48 ~~Lv~~m~~LarEEL~HFeqV~~im~~Rgi~l--~~~~~~~Ya~~L~k~vR-----~~~p~~l-lD~Llv~alIEARScE 119 (180)
T cd07910 48 PELVEAMSDLAREELQHFEQVLKIMKKRGIPL--GPDSKDPYASGLRKLVR-----KGEPERL-LDRLLVAALIEARSCE 119 (180)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC--CCCCCCHHHHHHHHHcc-----cCChHHH-HHHHHHHHHHHHHhHH
Confidence 56667788899999999887776665 4421 12222233333333322 1122222 2344545566655444
Q ss_pred hhccccccCCChhHHHHHHhHHHhhhhhHHHHHHHHHHhh
Q 036999 134 GYVGANPNLQNAISKRLVAGLLGVESGQDAVIRAFLYEKA 173 (273)
Q Consensus 134 AY~Gaap~l~~~~~l~~Aa~Il~VEA~Haa~IR~lL~~~~ 173 (273)
=+.=.+|.|.+++..+-=.+++..||||-..-=.+-.+..
T Consensus 120 RF~lLa~~l~D~eL~~FY~~Ll~SEarHy~~yl~LA~~y~ 159 (180)
T cd07910 120 RFALLAPALPDPELKKFYRGLLESEARHYELFLDLARKYF 159 (180)
T ss_pred HHHHHhccCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 4444569999999999999999999999987766666544
No 64
>PRK13456 DNA protection protein DPS; Provisional
Probab=28.04 E-value=1.9e+02 Score=26.05 Aligned_cols=56 Identities=25% Similarity=0.208 Sum_probs=46.1
Q ss_pred chhhhhHHhHHHHHHHHHHhhhhCCCccccCCcccCCCCCCccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 036999 6 VDLLEFPLNLEYLEAEFFLFGSLGYGLDKVAPNLTLGGPAPLGAKKANLDPLTKDLVLQFAWQEVGHLKAIKKTVKG 82 (273)
Q Consensus 6 ~diLNFALnLEyLEa~FY~~a~~g~gl~~~~~~l~~ggp~~~g~~~a~l~~~v~~~~~eia~~E~~HV~~L~~aLga 82 (273)
.++|+=.|.-|.---+-|..-..= + ...||.+++++.+|-.+|..|-+-|++.|++
T Consensus 109 ~~mL~~~L~AEr~AI~~Y~eii~~----------~-----------~~kDp~T~~l~~~IL~dE~eH~~dl~~lL~~ 164 (186)
T PRK13456 109 KEILKVLLEAERCAIRTYTEICDM----------T-----------AGKDPRTYDLALAILQEEIEHEAWFSELLGG 164 (186)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----------H-----------hcCCccHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 567888888888888889887521 1 1347899999999999999999999999973
No 65
>PF05974 DUF892: Domain of unknown function (DUF892); InterPro: IPR010287 This domain is found in several hypothetical bacterial proteins of unknown function.; PDB: 4ERU_B 3OGH_A 2GS4_B 2GYQ_B 3HIU_A.
Probab=26.34 E-value=1.1e+02 Score=26.03 Aligned_cols=112 Identities=12% Similarity=0.115 Sum_probs=66.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhhc--CCCCccccCCc-chHHHHHHHhcCCCCCCCCCCCCChHHHHHHHhhcchhh
Q 036999 55 DPLTKDLVLQFAWQEVGHLKAIKKTVK--GFPRPLLDLSA-GSFAKVIDKAFGKPLNPPFDPYANSINYLIASYLIPYVG 131 (273)
Q Consensus 55 ~~~v~~~~~eia~~E~~HV~~L~~aLg--av~~P~id~s~-~~F~~~~~~A~g~~l~p~FdPy~n~~~FL~~A~~~E~vG 131 (273)
+|..++.+++-..+...|+.-|+..+. +.......|.. ..+-+-+++..+.. .=||-.-+...+.+++.+|...
T Consensus 33 ~~~L~~~l~~h~~eT~~q~~rLe~~~~~lg~~p~~~~c~~~~gl~~e~~~~~~~~---~~d~~~~D~~li~a~q~~ehye 109 (159)
T PF05974_consen 33 SPELKAALEEHLEETEQQIERLEQIFEALGADPSAEKCDAMEGLVAEAQELIEEF---AEDPAVKDAALIAAAQKVEHYE 109 (159)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-CHH-HHHHHHHHHHHHHHHT----S-SHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCccCcchHHHHHHHHHHHHHhcc---cCCchHhhHHHHHHHHHHHHHH
Confidence 489999999999999999999999876 22211222211 12222222222210 1233444556777899999999
Q ss_pred HHhhcccc---ccCCChhHHHHHHhHHHhhhhhHHHHHHHH
Q 036999 132 LTGYVGAN---PNLQNAISKRLVAGLLGVESGQDAVIRAFL 169 (273)
Q Consensus 132 vtAY~Gaa---p~l~~~~~l~~Aa~Il~VEA~Haa~IR~lL 169 (273)
..+|.... ..+..++..++.-..|.=|-..+.+++.+.
T Consensus 110 IA~Y~tL~~~A~~lG~~e~a~lL~~~L~EE~~~~~~L~~~a 150 (159)
T PF05974_consen 110 IAAYGTLIALAKQLGDEEAAQLLEQNLDEEEAADEKLTQLA 150 (159)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99997542 344555555555555555555555555444
No 66
>cd01052 DPSL DPS-like protein, ferritin-like diiron-binding domain. DPSL (DPS-like). DPSL is a phylogenetically distinct class within the ferritin-like superfamily, and similar in many ways to the DPS (DNA Protecting protein under Starved conditions) proteins. Like DPS, these proteins are expressed in response to oxidative stress, form dodecameric cage-like particles, preferentially utilize hydrogen peroxide in the controlled oxidation of iron, and possess a short N-terminal extension implicated in stabilizing cellular DNA. This domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. These proteins are distantly related to bacterial ferritins which assemble 24 monomers, each of which have a four-helix bundle with a fifth shorter helix at the C terminus and a diiron (ferroxidase) center. Ferritins contain a center where oxidation of ferrous iron by molecular oxygen occurs, facilitating the detoxification of iron, protection against dioxygen and radical
Probab=25.30 E-value=2.8e+02 Score=22.35 Aligned_cols=56 Identities=21% Similarity=0.223 Sum_probs=43.9
Q ss_pred ccchhhhhHHhHHHHHHHHHHhhhhCCCccccCCcccCCCCCCccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036999 4 SDVDLLEFPLNLEYLEAEFFLFGSLGYGLDKVAPNLTLGGPAPLGAKKANLDPLTKDLVLQFAWQEVGHLKAIKKTV 80 (273)
Q Consensus 4 ~D~diLNFALnLEyLEa~FY~~a~~g~gl~~~~~~l~~ggp~~~g~~~a~l~~~v~~~~~eia~~E~~HV~~L~~aL 80 (273)
+..++|.-++..|..-.+.|.....- + .. -|..+++++.+|-.+|..|+.-++..|
T Consensus 93 ~~~~~l~~~~~~e~~~i~~~~~~~~~----------a----------~~-~D~~t~~ll~~~l~de~~h~~~~~~~~ 148 (148)
T cd01052 93 DVKGILKVNLKAERCAIKVYKELCDM----------T----------HG-KDPVTYDLALAILNEEIEHEEDLEELL 148 (148)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHH----------H----------cC-CChHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 34678888999999888999887620 0 01 378899999999999999999888653
No 67
>TIGR02284 conserved hypothetical protein. Members of this protein family are found mostly in the Proteobacteria, although one member is found in the the marine planctomycete Pirellula sp. strain 1. The function is unknown.
Probab=22.83 E-value=2.8e+02 Score=23.12 Aligned_cols=79 Identities=14% Similarity=0.154 Sum_probs=61.9
Q ss_pred chhhHHhhccccccCCChhHHHHHHhHHHhhhhhHHHHHHHHHHhhhcccCCCcccHHHHHHHHHHHHHhhCCCCCCCCc
Q 036999 128 PYVGLTGYVGANPNLQNAISKRLVAGLLGVESGQDAVIRAFLYEKANEKVHPYGIRVAEFTNKISQLRNTLGRSGIKDEG 207 (273)
Q Consensus 128 E~vGvtAY~Gaap~l~~~~~l~~Aa~Il~VEA~Haa~IR~lL~~~~~~~v~Py~~tV~~~t~~IS~lR~~L~~~~~~D~G 207 (273)
.+=|.-+|.=++-.+.++.++...-.+..--..|..-++..+-..+.+... .+-..+.+....-++|..++ +.+|+.
T Consensus 12 ~~D~~~gY~~aae~v~~~~lk~~f~~~~~~~~~~~~eL~~~v~~lGg~p~~-~gs~~g~lhr~w~~lks~~~--~~~d~a 88 (139)
T TIGR02284 12 SIDGKDGFEESAEEVKDPELATLFRRIAGEKSAIVSELQQVVASLGGKPED-HGSMVGSLHQFWGKIRATLT--PNDDYV 88 (139)
T ss_pred cccHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC-CCcHHHHHHHHHHHHHHHHc--CCChHH
Confidence 345788999999999999999999999999999999999988887754211 23445677888899999998 356666
Q ss_pred cc
Q 036999 208 LV 209 (273)
Q Consensus 208 i~ 209 (273)
+.
T Consensus 89 iL 90 (139)
T TIGR02284 89 VL 90 (139)
T ss_pred HH
Confidence 54
No 68
>COG4902 Uncharacterized protein conserved in archaea [Function unknown]
Probab=21.77 E-value=83 Score=27.77 Aligned_cols=36 Identities=19% Similarity=0.225 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc--CCCCccccCC
Q 036999 56 PLTKDLVLQFAWQEVGHLKAIKKTVK--GFPRPLLDLS 91 (273)
Q Consensus 56 ~~v~~~~~eia~~E~~HV~~L~~aLg--av~~P~id~s 91 (273)
.+-..+++.||..|+.|..+.+..|. .++.|.-.-+
T Consensus 74 kw~l~IF~nIA~SEQ~HmDAVk~LlekYnv~dP~~~~s 111 (189)
T COG4902 74 KWNLPIFRNIAASEQEHMDAVKSLLEKYNVQDPASTTS 111 (189)
T ss_pred ccCcHHHHHHHHhHHHHHHHHHHHHHHcCCCCCCccCc
Confidence 34456788999999999999999998 8888865433
No 69
>cd01042 DMQH Demethoxyubiquinone hydroxylase, ferritin-like diiron-binding domain. Demethoxyubiquinone hydroxylases (DMQH) are members of the ferritin-like, diiron-carboxylate family which are present in eukaryotes (the CLK-1/CAT5 family) and prokaryotes (the Coq7 family). DMQH participates in one of the last steps of ubiquinone biosysnthesis and is responsible for DMQ hydroxylation, resulting in the formation of hydroxyubiquinone, a precursor of ubiquinone. CLK-1 is a mitochondrial inner membrane protein and Coq7 is a proposed interfacial integral membrane protein. Mutations in the Caenorhabditis elegans gene clk-1 affect biological timing and extend longevity. The conserved residues of a diiron center are present in this domain.
Probab=21.61 E-value=1.3e+02 Score=26.30 Aligned_cols=46 Identities=17% Similarity=0.153 Sum_probs=42.1
Q ss_pred chhhHHhhccccccCCChhHHHHHHhHHHhhhhhHHHHHHHHHHhh
Q 036999 128 PYVGLTGYVGANPNLQNAISKRLVAGLLGVESGQDAVIRAFLYEKA 173 (273)
Q Consensus 128 E~vGvtAY~Gaap~l~~~~~l~~Aa~Il~VEA~Haa~IR~lL~~~~ 173 (273)
|.-.+.-|.|++-.+.++..+...--+..-|-.|-.+....+.+++
T Consensus 12 E~gA~~IY~gQ~~~~~~~~~~~~l~~~~~~E~~Hl~~f~~~i~~~~ 57 (165)
T cd01042 12 EVGAVRIYRGQLAVARDPAVRPLIKEMLDEEKDHLAWFEELLPELG 57 (165)
T ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 5556788999999999999999999999999999999999999875
No 70
>KOG4061 consensus DMQ mono-oxygenase/Ubiquinone biosynthesis protein COQ7/CLK-1/CAT5 [General function prediction only]
Probab=21.21 E-value=5.8e+02 Score=23.27 Aligned_cols=102 Identities=21% Similarity=0.280 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhc-CCCCccccCCcchHHHHHHHhcCCCCCCCCCCCCChHHHHHHHhhcchhhHHhhc
Q 036999 58 TKDLVLQFAWQEVGHLKAIKKTVK-GFPRPLLDLSAGSFAKVIDKAFGKPLNPPFDPYANSINYLIASYLIPYVGLTGYV 136 (273)
Q Consensus 58 v~~~~~eia~~E~~HV~~L~~aLg-av~~P~id~s~~~F~~~~~~A~g~~l~p~FdPy~n~~~FL~~A~~~E~vGvtAY~ 136 (273)
+...++.+-+||..|.+-..+..- ---||.+ +-|+-|..-|.++| -||..
T Consensus 79 vgpvi~hmWdqEk~Hl~tf~~l~~k~rVrpT~----------------------l~P~w~vagfalGa-------GTALl 129 (217)
T KOG4061|consen 79 VGPVIKHMWDQEKEHLKTFENLALKHRVRPTV----------------------LTPLWNVAGFALGA-------GTALL 129 (217)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHccCCchh----------------------hhhHHHHHHHHhcc-------chhhh
Confidence 677889999999999998776543 3334433 22333444454433 12333
Q ss_pred cccccCCChhHHHHHHhHHHhhhhhHH----HHHHHHHHhhhcccCCCcccHHHHHHHHHHHHHh-hCCCCCCCCcc
Q 036999 137 GANPNLQNAISKRLVAGLLGVESGQDA----VIRAFLYEKANEKVHPYGIRVAEFTNKISQLRNT-LGRSGIKDEGL 208 (273)
Q Consensus 137 Gaap~l~~~~~l~~Aa~Il~VEA~Haa----~IR~lL~~~~~~~v~Py~~tV~~~t~~IS~lR~~-L~~~~~~D~Gi 208 (273)
| + ..+.|--.+||--=.. -+|.++.+-+ .+..|+.+-|..+||. |.+ .|-|+
T Consensus 130 g-------~--eaAMACT~AVEtvIg~HYNdQlr~l~~~~p--------e~~kell~~i~~fRDeEleH---hdtgv 186 (217)
T KOG4061|consen 130 G-------K--EAAMACTEAVETVIGGHYNDQLRELAEDDP--------EEHKELLSTITKFRDEELEH---HDTGV 186 (217)
T ss_pred C-------h--HHHHHHHHHHHHHHHHhhhHHHHHHHHhCc--------HhHHHHHHHHHHHhHHHHHh---hcccc
Confidence 2 2 2344555556643222 3444444432 2457888999999976 543 45555
Done!