Query 037001
Match_columns 284
No_of_seqs 132 out of 346
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 12:31:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037001.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037001hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dgl_A Casein kinase II subuni 100.0 8.8E-95 3E-99 649.4 12.6 193 91-283 2-194 (215)
2 1qf8_A Casein kinase II; casei 100.0 1.4E-87 4.8E-92 590.5 10.2 179 92-270 3-181 (182)
3 4esj_A Type-2 restriction enzy 74.3 0.66 2.3E-05 42.6 0.1 60 195-261 34-105 (257)
4 2kxe_A DNA polymerase II small 59.8 4.7 0.00016 30.5 2.2 29 168-196 8-36 (75)
5 2con_A RUH-035 protein, NIN on 34.5 12 0.0004 28.6 0.8 13 219-231 26-38 (79)
6 3vk8_A Probable formamidopyrim 31.3 30 0.001 31.7 3.2 15 219-233 275-289 (295)
7 1k3x_A Endonuclease VIII; hydr 29.8 24 0.00084 31.5 2.3 10 221-230 252-261 (262)
8 3m7n_A Putative uncharacterize 27.5 30 0.001 29.1 2.3 32 191-234 136-167 (179)
9 2jmo_A Parkin; IBR, E3 ligase, 26.5 48 0.0016 24.4 3.0 36 197-235 27-70 (80)
10 3u5n_A E3 ubiquitin-protein li 23.7 41 0.0014 28.7 2.5 35 197-236 24-58 (207)
11 2i9n_A MHB4A peptide; beta-hai 23.6 24 0.00083 22.5 0.7 21 5-30 12-32 (33)
12 2kep_A General secretion pathw 23.2 41 0.0014 26.6 2.2 26 163-188 20-45 (110)
13 1f62_A Transcription factor WS 22.6 26 0.0009 23.3 0.8 8 223-230 41-48 (51)
14 2nn6_I 3'-5' exoribonuclease C 22.3 43 0.0015 29.1 2.3 41 175-233 155-195 (209)
15 1vk6_A NADH pyrophosphatase; 1 20.8 58 0.002 29.0 2.9 34 194-237 106-139 (269)
16 3na7_A HP0958; flagellar bioge 20.2 12 0.00041 33.1 -1.7 35 200-234 198-233 (256)
17 2lbm_A Transcriptional regulat 20.0 13 0.00046 31.0 -1.3 33 197-230 80-115 (142)
No 1
>4dgl_A Casein kinase II subunit beta; protein kinase, transferase; 3.00A {Homo sapiens} PDB: 2r6m_A 1jwh_C 1ds5_E*
Probab=100.00 E-value=8.8e-95 Score=649.42 Aligned_cols=193 Identities=58% Similarity=1.125 Sum_probs=174.8
Q ss_pred CCCCCCchHHHHhCCCCCeeEEecCcccccCCCccCCCCCCCCCHHHHHHHHcCCCCCCCCCCchhhHHHHHHHHHHHhc
Q 037001 91 SEGDDTSWISWFCNLRGNEFFCEVDDDYIQDDFNLCGLSGQVPYYDYALDLILDVESSHGEMFTEEQNELVESAAEMLYG 170 (284)
Q Consensus 91 s~~e~~sWI~wFcsl~gneffceVDedYI~D~FNL~GL~~~Vp~Y~~AL~~ILd~~~~~~~~~~~~~~~~ie~~A~~LYG 170 (284)
|++++.+||+|||+++|||||||||+|||+|+|||+||+++||+|++||+||||.+++++..+++++.+.|+++|++|||
T Consensus 2 s~s~~~sWI~wFc~~~gneffceVd~dyI~D~FNL~GL~~~Vp~y~~aLd~Ild~~~~~~~~~~~~~~~~ie~~A~~LYG 81 (215)
T 4dgl_A 2 SSSEEVSWISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPDEELEDNPNQSDLIEQAAEMLYG 81 (215)
T ss_dssp ------CHHHHHHTSTTCTTCCCCCHHHHHSTTTTTTGGGTSSSHHHHHHHHTTC--------CTTHHHHHHHHHHHHHH
T ss_pred CCcccCcHHHHHhCCCCCeEEEEeCHHHhcCcccccCchhccccHHHHHHHHcCCCCcchhcccchhHHHHHHHHHHHhh
Confidence 34567799999999999999999999999999999999999999999999999998765444445567889999999999
Q ss_pred ccccceeeChHHHHHHHHhhccCccCCCCcccCCCCCccccccCCCCCCccceeecCCCCccccCCCCCCCcccccccCC
Q 037001 171 LIHARYILTTKGMAAMLDKYKNYDFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPRCEDIYYPRSKYQGNIDGAYFGT 250 (284)
Q Consensus 171 LIHARYIlT~~GL~~M~eKY~~g~FG~CPRv~C~gq~lLPiGlSD~pg~stVKlYCP~C~DVY~P~s~~~~~IDGAyFGt 250 (284)
|||||||+|++||++|++||++|+||+||||+|++|+|||||+||+||+++||||||+|+|||+|++.++++||||||||
T Consensus 82 LIHARYIlT~~Gl~~M~eKY~~g~FG~CPRv~C~~q~~LPvGlSD~pg~~~VKlyCP~C~DvY~P~s~r~~~iDGAyFGt 161 (215)
T 4dgl_A 82 LIHARYILTNRGIAQMLEKYQQGDFGYCPRVYCENQPMLPIGLSDIPGEAMVKLYCPKCMDVYTPKSSRHHHTDGAYFGT 161 (215)
T ss_dssp HHHHHHTTSHHHHHHHHHHHHTTTTCBCCBGGGTSCBCEEEESCSSTTSCBEEEECTTTCCEECCSSTTSTTSBGGGTTT
T ss_pred hhhHhheecHHHHHHHHHHHhcCCCCcCCccccCCCceeccccCCCCCccceeEeCCCcccccCCCcccccccccceecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999998888999999999
Q ss_pred chhhHHHHHhCCCCCCCCCCCcceeeeeeeecC
Q 037001 251 TFPHLFLMTYGHLKPQKAVQSYAPRVFGFKIHK 283 (284)
Q Consensus 251 sFpHlFl~~yp~l~p~~~~~~YvPrIFGFKIh~ 283 (284)
||||||||+||++.|+++.++|+|||||||||+
T Consensus 162 sFph~f~~~~p~l~p~~~~~~yvPrifGFkih~ 194 (215)
T 4dgl_A 162 GFPHMLFMVHPEYRPKRPANQFVPRLYGFKIHP 194 (215)
T ss_dssp THHHHHHHHCGGGCCCSCSCCCCCEETTEEECT
T ss_pred cchHHHHHHcccccCCCCCCcccCeEeEEEecH
Confidence 999999999999999999999999999999996
No 2
>1qf8_A Casein kinase II; casein kinase beta subunit (1-182), Ser/Thr protein kinase, Zn finger, transferase; HET: MSE; 1.74A {Homo sapiens} SCOP: g.41.4.1 PDB: 3eed_A 1rqf_A
Probab=100.00 E-value=1.4e-87 Score=590.48 Aligned_cols=179 Identities=58% Similarity=1.114 Sum_probs=162.2
Q ss_pred CCCCCchHHHHhCCCCCeeEEecCcccccCCCccCCCCCCCCCHHHHHHHHcCCCCCCCCCCchhhHHHHHHHHHHHhcc
Q 037001 92 EGDDTSWISWFCNLRGNEFFCEVDDDYIQDDFNLCGLSGQVPYYDYALDLILDVESSHGEMFTEEQNELVESAAEMLYGL 171 (284)
Q Consensus 92 ~~e~~sWI~wFcsl~gneffceVDedYI~D~FNL~GL~~~Vp~Y~~AL~~ILd~~~~~~~~~~~~~~~~ie~~A~~LYGL 171 (284)
++++.+||+|||+++|||||||||+|||+|+|||+||+++||||++||+||||.++.+++.+++++.+.++++|++||||
T Consensus 3 ~~~~~sWI~wF~~~~gneffceVd~dyI~D~FNL~GL~~~vp~y~~aLd~Ild~~~~~~~~~~~~~~~~ie~~a~~LYGL 82 (182)
T 1qf8_A 3 SSEEVSWISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPDEELEDNPNQSDLIEQAAEMLYGL 82 (182)
T ss_dssp ----CCHHHHHHHSTTCTTCCCCCHHHHHSGGGGTTGGGTSTTHHHHHHHHTTCCCC------CHHHHHHHHHHHHHHHH
T ss_pred CCccCcHHHHHhCCCCCeEEEEeCHHHhcCcchhhCccccccCHHHHHHHHhCCCCccccccchhhhHHHHHHHHHHhch
Confidence 44667899999999999999999999999999999999999999999999999987665544555678899999999999
Q ss_pred cccceeeChHHHHHHHHhhccCccCCCCcccCCCCCccccccCCCCCCccceeecCCCCccccCCCCCCCcccccccCCc
Q 037001 172 IHARYILTTKGMAAMLDKYKNYDFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPRCEDIYYPRSKYQGNIDGAYFGTT 251 (284)
Q Consensus 172 IHARYIlT~~GL~~M~eKY~~g~FG~CPRv~C~gq~lLPiGlSD~pg~stVKlYCP~C~DVY~P~s~~~~~IDGAyFGts 251 (284)
||||||+|++||++|++||++|+||+||||+|++|+|||||+||+||+++||||||+|+|||+|++.++.+|||||||||
T Consensus 83 IHaRyIlT~~Gl~~M~eKy~~g~FG~CPRv~C~~q~~LPvGlSd~pg~~~VKlyCP~C~DvY~p~s~~~~~iDGAyFGts 162 (182)
T 1qf8_A 83 IHARYILTNRGIAQMLEKYQQGDFGYCPRVYCENQPMLPIGLSDIPGEAMVKLYCPKCMDVYTPKSSRHHHTDGAYFGTG 162 (182)
T ss_dssp HHHHHTTSHHHHHHHHHHHHTTTTCBCCBGGGTTCBCEEECSCSSTTSCBCEEECTTTCCEECCSSGGGTTSBGGGTCSS
T ss_pred hhhhhcccHHHHHHHHHhhhcCcCCCCCccccCCCcccCCccCCCCCCCceEEECCCccceeCCCcccccccccceecCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999988878999999999
Q ss_pred hhhHHHHHhCCCCCCCCCC
Q 037001 252 FPHLFLMTYGHLKPQKAVQ 270 (284)
Q Consensus 252 FpHlFl~~yp~l~p~~~~~ 270 (284)
|||||||+||++.|+++.+
T Consensus 163 Fph~f~~~~p~l~p~~~~~ 181 (182)
T 1qf8_A 163 FPHMLFMVHPEYRPKRPAN 181 (182)
T ss_dssp HHHHHHHHCGGGSCSCC--
T ss_pred hHHHHHHHcccccCCCCCC
Confidence 9999999999999987654
No 3
>4esj_A Type-2 restriction enzyme DPNI; restriction endonuclease-DNA complex, type IIM, type IIE, RE enzyme, DPNI; HET: DNA 6MA; 2.05A {Streptococcus pneumoniae}
Probab=74.33 E-value=0.66 Score=42.60 Aligned_cols=60 Identities=30% Similarity=0.628 Sum_probs=37.4
Q ss_pred cCCCCcccCCCCCccccccCCCCCCccce-eecCCCCccccCCCCCC--C--cccccccC-------CchhhHHHHHhC
Q 037001 195 FGRCPRVYCCGQPCLPVGQSDIPRSSTVK-IYCPRCEDIYYPRSKYQ--G--NIDGAYFG-------TTFPHLFLMTYG 261 (284)
Q Consensus 195 FG~CPRv~C~gq~lLPiGlSD~pg~stVK-lYCP~C~DVY~P~s~~~--~--~IDGAyFG-------tsFpHlFl~~yp 261 (284)
-+.||+ |..-++- .-+.-.+|. .|||.|.+-|.-+|+.. + ..||||-- .+=|.+|||+|.
T Consensus 34 n~yCPn--CG~~~l~-----~f~nN~PVaDF~C~~C~EeyELKSk~~~~~~~I~dGAY~Tmi~Ri~s~~NPnFffL~Y~ 105 (257)
T 4esj_A 34 QSYCPN--CGNNPLN-----HFENNRPVADFYCNHCSEEFELKSKKGNFSSTINDGAYATMMKRVQADNNPNFFFLTYT 105 (257)
T ss_dssp HCCCTT--TCCSSCE-----EC----CCCEEECTTTCCEEEEEEEESSCCSEEEEEEHHHHHHHHHTTCCCEEEEEEEC
T ss_pred CCcCCC--CCChhhh-----hccCCCcccccccCCcchhheeccccCccCccccCchHHHHHHHHhccCCCCEEEEEec
Confidence 356775 4333332 233455665 89999999999876432 2 34999963 366788888886
No 4
>2kxe_A DNA polymerase II small subunit; D-family, archara, helical BU transferase; HET: DNA; NMR {Pyrococcus horikoshii}
Probab=59.78 E-value=4.7 Score=30.46 Aligned_cols=29 Identities=17% Similarity=0.473 Sum_probs=26.4
Q ss_pred HhcccccceeeChHHHHHHHHhhccCccC
Q 037001 168 LYGLIHARYILTTKGMAAMLDKYKNYDFG 196 (284)
Q Consensus 168 LYGLIHARYIlT~~GL~~M~eKY~~g~FG 196 (284)
.=+|+-++|++||..--.+.+-|++|+|-
T Consensus 8 Vk~L~~n~YLiTPsAYyLL~~~ykkg~Fs 36 (75)
T 2kxe_A 8 VKGLMKNGYLITPSAYYLLVGHFNEGKFS 36 (75)
T ss_dssp HHHHHTTTCEECHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHCCceeCchHHHHHHHHhhccccc
Confidence 45789999999999999999999999985
No 5
>2con_A RUH-035 protein, NIN one binding protein; ribosome, RNA binding protein, unknown function, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.41.15.1
Probab=34.51 E-value=12 Score=28.62 Aligned_cols=13 Identities=23% Similarity=0.876 Sum_probs=10.5
Q ss_pred CccceeecCCCCc
Q 037001 219 SSTVKIYCPRCED 231 (284)
Q Consensus 219 ~stVKlYCP~C~D 231 (284)
..+-|.|||+|.-
T Consensus 26 ~~~~k~FCp~CGn 38 (79)
T 2con_A 26 SDMNRVFCGHCGN 38 (79)
T ss_dssp SCSSCCSCSSSCC
T ss_pred CCcccccccccCc
Confidence 4466999999986
No 6
>3vk8_A Probable formamidopyrimidine-DNA glycosylase; DNA glycosylase, hneil1 ortholog, DNA lesion, thymine glycol zincless finger; HET: DNA CTG; 2.00A {Acanthamoeba polyphaga mimivirus} PDB: 3vk7_A* 3a42_A 3a46_A* 3a45_A*
Probab=31.30 E-value=30 Score=31.67 Aligned_cols=15 Identities=7% Similarity=0.290 Sum_probs=11.4
Q ss_pred CccceeecCCCCccc
Q 037001 219 SSTVKIYCPRCEDIY 233 (284)
Q Consensus 219 ~stVKlYCP~C~DVY 233 (284)
.++---|||.|+..=
T Consensus 275 ~~R~t~~CP~CQ~~~ 289 (295)
T 3vk8_A 275 NKRTTYWAPAIQKLE 289 (295)
T ss_dssp CCCEEEECTTTCBCC
T ss_pred CCCccEECCCCCCCc
Confidence 456678999998654
No 7
>1k3x_A Endonuclease VIII; hydrolase/DNA, hydrolase-DNA complex; HET: BRU PED; 1.25A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8 PDB: 1k3w_A* 1q39_A 2ea0_A* 2oq4_A* 1q3c_A 2opf_A* 1q3b_A*
Probab=29.85 E-value=24 Score=31.53 Aligned_cols=10 Identities=30% Similarity=0.979 Sum_probs=7.6
Q ss_pred cceeecCCCC
Q 037001 221 TVKIYCPRCE 230 (284)
Q Consensus 221 tVKlYCP~C~ 230 (284)
+---|||+|+
T Consensus 252 R~t~~CP~CQ 261 (262)
T 1k3x_A 252 RPFYWCPGCQ 261 (262)
T ss_dssp EEEEECTTTC
T ss_pred CCeEECCCCC
Confidence 4455999997
No 8
>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A
Probab=27.53 E-value=30 Score=29.15 Aligned_cols=32 Identities=19% Similarity=0.450 Sum_probs=23.6
Q ss_pred ccCccCCCCcccCCCCCccccccCCCCCCccceeecCCCCcccc
Q 037001 191 KNYDFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPRCEDIYY 234 (284)
Q Consensus 191 ~~g~FG~CPRv~C~gq~lLPiGlSD~pg~stVKlYCP~C~DVY~ 234 (284)
.-..+..|++ | |.++.|++ . .+.||.|.-+-.
T Consensus 136 lGvv~a~~~~--~-g~~m~~~~-~--------~~~cp~~g~~e~ 167 (179)
T 3m7n_A 136 MGVLRALCSN--C-KTEMVREG-D--------ILKCPECGRVEK 167 (179)
T ss_dssp CEEEECBCTT--T-CCBCEECS-S--------SEECSSSCCEEC
T ss_pred CCEEEecccc--c-CCceEECC-C--------EEECCCCCCEEE
Confidence 3445668884 4 78899987 2 799999987763
No 9
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=26.49 E-value=48 Score=24.42 Aligned_cols=36 Identities=22% Similarity=0.450 Sum_probs=20.4
Q ss_pred CCCcccCCCCCccccccCCCCCC--------ccceeecCCCCccccC
Q 037001 197 RCPRVYCCGQPCLPVGQSDIPRS--------STVKIYCPRCEDIYYP 235 (284)
Q Consensus 197 ~CPRv~C~gq~lLPiGlSD~pg~--------stVKlYCP~C~DVY~P 235 (284)
-||+..|...-... + +.... .-=..||.+|+.-||.
T Consensus 27 ~CP~p~C~~~v~~~-~--~~~~v~C~~~~~~~C~~~FC~~C~~~wH~ 70 (80)
T 2jmo_A 27 LCPRPGCGAGLLPE-P--DQRKVTCEGGNGLGCGFAFCRECKEAYHE 70 (80)
T ss_dssp CCCSSSCCCCCCCC-S--CTTSBCTTSSSTTCCSCCEETTTTEECCS
T ss_pred ECCCCCCCcccEEC-C--CCCcCCCCCCCCCCCCCeeccccCccccC
Confidence 59999997653332 1 11111 1113477788888775
No 10
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=23.69 E-value=41 Score=28.70 Aligned_cols=35 Identities=29% Similarity=0.653 Sum_probs=22.8
Q ss_pred CCCcccCCCCCccccccCCCCCCccceeecCCCCccccCC
Q 037001 197 RCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPRCEDIYYPR 236 (284)
Q Consensus 197 ~CPRv~C~gq~lLPiGlSD~pg~stVKlYCP~C~DVY~P~ 236 (284)
.|||.+.-. ||.-++...|.. ..|||.|...-.+.
T Consensus 24 ~C~~~~H~~--Cl~p~l~~~p~~---~W~C~~C~~~~~~~ 58 (207)
T 3u5n_A 24 KCPKVFHLT--CHVPTLLSFPSG---DWICTFCRDIGKPE 58 (207)
T ss_dssp SSSCEECTT--TSSSCCSSCCSS---CCCCTTTSCSSSCS
T ss_pred CCCCccCCc--cCCCCCCCCCCC---CEEeCceeCccccc
Confidence 588888754 443345555532 59999998766543
No 11
>2i9n_A MHB4A peptide; beta-hairpin, alpha-helix, de novo protein; NMR {Synthetic}
Probab=23.61 E-value=24 Score=22.53 Aligned_cols=21 Identities=48% Similarity=0.762 Sum_probs=15.1
Q ss_pred CCCCCCCcccccCccchhhhhHHHHh
Q 037001 5 RGAGGSKSEVVVGPVDRKRINDALDK 30 (284)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 30 (284)
.|++||.+|.. -|||.+++.|
T Consensus 12 eggggsaaeay-----akriaeamak 32 (33)
T 2i9n_A 12 EGGGGSAAEAY-----AKRIAEAMAK 32 (33)
T ss_dssp CSSCCCSTHHH-----HHHHHHHHCC
T ss_pred ecCCchHHHHH-----HHHHHHHHhC
Confidence 36677766643 7999999864
No 12
>2kep_A General secretion pathway protein G; methylation, transport, transport protein; NMR {Pseudomonas aeruginosa}
Probab=23.25 E-value=41 Score=26.61 Aligned_cols=26 Identities=31% Similarity=0.413 Sum_probs=23.1
Q ss_pred HHHHHHhcccccceeeChHHHHHHHH
Q 037001 163 SAAEMLYGLIHARYILTTKGMAAMLD 188 (284)
Q Consensus 163 ~~A~~LYGLIHARYIlT~~GL~~M~e 188 (284)
..|..+|-|=|-||=.|.+||+++.+
T Consensus 20 ~~Al~~Y~lD~G~YPtt~qgL~aLv~ 45 (110)
T 2kep_A 20 AAALDMYKLDNFAYPSTQQGLEALVK 45 (110)
T ss_dssp HHHHHHHHHHTSSCCCTTHHHHHHHS
T ss_pred HHHHHHHHHHhCCCCCcHHHHHHHHh
Confidence 34667999999999999999999987
No 13
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=22.60 E-value=26 Score=23.31 Aligned_cols=8 Identities=38% Similarity=1.223 Sum_probs=4.8
Q ss_pred eeecCCCC
Q 037001 223 KIYCPRCE 230 (284)
Q Consensus 223 KlYCP~C~ 230 (284)
..|||.|.
T Consensus 41 ~W~C~~C~ 48 (51)
T 1f62_A 41 EWQCPACQ 48 (51)
T ss_dssp CCSCTTTS
T ss_pred cEECcCcc
Confidence 46666664
No 14
>2nn6_I 3'-5' exoribonuclease CSL4 homolog; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2
Probab=22.26 E-value=43 Score=29.08 Aligned_cols=41 Identities=20% Similarity=0.391 Sum_probs=28.8
Q ss_pred ceeeChHHHHHHHHhhccCccCCCCcccCCCCCccccccCCCCCCccceeecCCCCccc
Q 037001 175 RYILTTKGMAAMLDKYKNYDFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPRCEDIY 233 (284)
Q Consensus 175 RYIlT~~GL~~M~eKY~~g~FG~CPRv~C~gq~lLPiGlSD~pg~stVKlYCP~C~DVY 233 (284)
+|.||-+ +.-.-..+..|++ |.+++|++-. .|.||.|.-+-
T Consensus 155 ~i~LS~k------~~~lGVv~A~c~~----g~~m~~~~~~--------~m~cp~cg~~E 195 (209)
T 2nn6_I 155 NYLLTTA------ENELGVVVAHSES----GIQMVPISWC--------EMQCPKTHTKE 195 (209)
T ss_dssp EEEEECC------SSSCEECCCBCSS----SCBCEEEETT--------EEECTTTTCCB
T ss_pred eEEEEEe------cCCCcEEEEEcCC----CCEEEEccCC--------EEECCCCCCEE
Confidence 5777643 2334455668887 6789998753 69999999776
No 15
>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS protein structure initiative, joint center for structural G hydrolase; HET: MSE; 2.20A {Escherichia coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A
Probab=20.76 E-value=58 Score=29.02 Aligned_cols=34 Identities=26% Similarity=0.779 Sum_probs=24.6
Q ss_pred ccCCCCcccCCCCCccccccCCCCCCccceeecCCCCccccCCC
Q 037001 194 DFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPRCEDIYYPRS 237 (284)
Q Consensus 194 ~FG~CPRv~C~gq~lLPiGlSD~pg~stVKlYCP~C~DVY~P~s 237 (284)
.+-.||+ | |.++.+ .....+.+||.|..++.|+.
T Consensus 106 ~~~fC~~--C-G~~~~~-------~~~~~~~~C~~C~~~~yp~~ 139 (269)
T 1vk6_A 106 SHKYCGY--C-GHEMYP-------SKTEWAMLCSHCRERYYPQI 139 (269)
T ss_dssp TTSBCTT--T-CCBEEE-------CSSSSCEEESSSSCEECCCC
T ss_pred cCCcccc--C-CCcCcc-------CCCceeeeCCCCCCEecCCC
Confidence 3668887 4 445544 35677999999999999863
No 16
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=20.17 E-value=12 Score=33.14 Aligned_cols=35 Identities=29% Similarity=0.347 Sum_probs=23.0
Q ss_pred cccCCCCCc-cccccCCCCCCccceeecCCCCcccc
Q 037001 200 RVYCCGQPC-LPVGQSDIPRSSTVKIYCPRCEDIYY 234 (284)
Q Consensus 200 Rv~C~gq~l-LPiGlSD~pg~stVKlYCP~C~DVY~ 234 (284)
+-.|.||++ ||-+.-.....+.--++||.|+-|-.
T Consensus 198 ~~~C~GC~~~lppq~~~~i~~~~~Iv~Cp~CgRIL~ 233 (256)
T 3na7_A 198 KQACGGCFIRLNDKIYTEVLTSGDMITCPYCGRILY 233 (256)
T ss_dssp TTBCTTTCCBCCHHHHHHHHHSSSCEECTTTCCEEE
T ss_pred CCccCCCCeeeCHHHHHHHHCCCCEEECCCCCeeEE
Confidence 447888876 77655433333333499999998865
No 17
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=20.02 E-value=13 Score=30.98 Aligned_cols=33 Identities=24% Similarity=0.494 Sum_probs=23.5
Q ss_pred CCCcccCCCCCcccccc---CCCCCCccceeecCCCC
Q 037001 197 RCPRVYCCGQPCLPVGQ---SDIPRSSTVKIYCPRCE 230 (284)
Q Consensus 197 ~CPRv~C~gq~lLPiGl---SD~pg~stVKlYCP~C~ 230 (284)
.|||++|..+...|+|. +++. ...-+.+||.|.
T Consensus 80 ~Cpr~Fh~~Cl~p~l~~~~l~~i~-~p~~~W~C~~C~ 115 (142)
T 2lbm_A 80 FCHNAFCKKCILRNLGRKELSTIM-DENNQWYCYICH 115 (142)
T ss_dssp SSCCEEEHHHHHHHTCHHHHHHHH-TSTTCCCCTTTC
T ss_pred CCCCeeeHhhcCCCCChhhhhhcc-cCCCCCEeeccc
Confidence 89999999998888883 2210 012278899995
Done!