BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037002
(177 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1GME|A Chain A, Crystal Structure And Assembly Of An Eukaryotic Small Heat
Shock Protein
pdb|1GME|B Chain B, Crystal Structure And Assembly Of An Eukaryotic Small Heat
Shock Protein
pdb|1GME|C Chain C, Crystal Structure And Assembly Of An Eukaryotic Small Heat
Shock Protein
pdb|1GME|D Chain D, Crystal Structure And Assembly Of An Eukaryotic Small Heat
Shock Protein
Length = 151
Score = 81.6 bits (200), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 61/154 (39%), Positives = 81/154 (52%), Gaps = 12/154 (7%)
Query: 12 LMLYTRSPFFDVMFPMTEDPFRVLGQTLLTIPKGAEHHQTLA-------LTPTSHVITLD 64
+ + RS FD + DPF + I G A TP +HV D
Sbjct: 1 MSIVRRSNVFDPFADLWADPFDTFRSIVPAISGGGSETAAFANARMDWKETPEAHVFKAD 60
Query: 65 IPRMKKDDAKIAVEENRVLRVSGERKSDDYYKEEVEGDKWHRAERPFGKVWRQFRMPMSA 124
+P +KK++ K+ VE+ VL VSGER + +E + DKWHR ER GK R+FR+ A
Sbjct: 61 LPGVKKEEVKVEVEDGNVLVVSGERTKE----KEDKNDKWHRVERSSGKFVRRFRLLEDA 116
Query: 125 DLDHVKAHLENGVLRITVPKLVEEKKRQPKVINI 158
++ VKA LENGVL +TVPK E KK + K I I
Sbjct: 117 KVEEVKAGLENGVLTVTVPK-AEVKKPEVKAIQI 149
>pdb|2BYU|A Chain A, Negative Stain Em Reconstruction Of M.Tuberculosis
Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
pdb|2BYU|B Chain B, Negative Stain Em Reconstruction Of M.Tuberculosis
Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
pdb|2BYU|C Chain C, Negative Stain Em Reconstruction Of M.Tuberculosis
Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
pdb|2BYU|D Chain D, Negative Stain Em Reconstruction Of M.Tuberculosis
Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
pdb|2BYU|E Chain E, Negative Stain Em Reconstruction Of M.Tuberculosis
Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
pdb|2BYU|F Chain F, Negative Stain Em Reconstruction Of M.Tuberculosis
Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
pdb|2BYU|G Chain G, Negative Stain Em Reconstruction Of M.Tuberculosis
Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
pdb|2BYU|H Chain H, Negative Stain Em Reconstruction Of M.Tuberculosis
Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
pdb|2BYU|I Chain I, Negative Stain Em Reconstruction Of M.Tuberculosis
Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
pdb|2BYU|J Chain J, Negative Stain Em Reconstruction Of M.Tuberculosis
Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
pdb|2BYU|K Chain K, Negative Stain Em Reconstruction Of M.Tuberculosis
Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
pdb|2BYU|L Chain L, Negative Stain Em Reconstruction Of M.Tuberculosis
Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
Length = 101
Score = 70.9 bits (172), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 45/90 (50%), Positives = 60/90 (66%), Gaps = 4/90 (4%)
Query: 55 TPTSHVITLDIPRMKKDDAKIAVEENRVLRVSGERKSDDYYKEEVEGDKWHRAERPFGKV 114
TP +HV D+P +KK++ K+ VE+ VL VSGER + +E + DKWHR ER GK
Sbjct: 9 TPEAHVFKADLPGVKKEEVKVEVEDGNVLVVSGERTKE----KEDKNDKWHRVERSSGKF 64
Query: 115 WRQFRMPMSADLDHVKAHLENGVLRITVPK 144
R+FR+ A ++ VKA LENGVL +TVPK
Sbjct: 65 VRRFRLLEDAKVEEVKAGLENGVLTVTVPK 94
>pdb|2H50|A Chain A, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|B Chain B, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|C Chain C, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|D Chain D, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|E Chain E, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|F Chain F, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|G Chain G, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|H Chain H, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|I Chain I, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|J Chain J, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|K Chain K, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|L Chain L, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|M Chain M, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|N Chain N, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|O Chain O, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|P Chain P, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|Q Chain Q, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|R Chain R, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|S Chain S, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|T Chain T, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|U Chain U, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|V Chain V, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|W Chain W, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|X Chain X, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|A Chain A, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|B Chain B, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|C Chain C, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|D Chain D, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|E Chain E, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|F Chain F, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|G Chain G, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|H Chain H, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|I Chain I, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|J Chain J, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|K Chain K, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|L Chain L, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|M Chain M, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|N Chain N, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|O Chain O, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|P Chain P, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|Q Chain Q, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|R Chain R, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|S Chain S, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|T Chain T, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|U Chain U, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|V Chain V, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|W Chain W, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|X Chain X, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
Length = 93
Score = 70.5 bits (171), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 45/90 (50%), Positives = 60/90 (66%), Gaps = 4/90 (4%)
Query: 55 TPTSHVITLDIPRMKKDDAKIAVEENRVLRVSGERKSDDYYKEEVEGDKWHRAERPFGKV 114
TP +HV D+P +KK++ K+ VE+ VL VSGER + +E + DKWHR ER GK
Sbjct: 8 TPEAHVFKADLPGVKKEEVKVEVEDGNVLVVSGERTKE----KEDKNDKWHRVERSSGKF 63
Query: 115 WRQFRMPMSADLDHVKAHLENGVLRITVPK 144
R+FR+ A ++ VKA LENGVL +TVPK
Sbjct: 64 VRRFRLLEDAKVEEVKAGLENGVLTVTVPK 93
>pdb|3GLA|A Chain A, Crystal Structure Of The Hspa From Xanthomonas Axonopodis
pdb|3GLA|B Chain B, Crystal Structure Of The Hspa From Xanthomonas Axonopodis
Length = 100
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 51/86 (59%), Gaps = 7/86 (8%)
Query: 60 VITLDIPRMKKDDAKIAVEENR-VLRVSGERKSDDYYKEEVEGDKWHRAERPFGKVWRQF 118
V+ D+P + D ++I V+ ++ +L + GERKS+ E +++ R ER +G R+F
Sbjct: 17 VLYADLPGI--DPSQIEVQMDKGILSIRGERKSES----STETERFSRIERRYGSFHRRF 70
Query: 119 RMPMSADLDHVKAHLENGVLRITVPK 144
+P SAD D + A NGVL I +PK
Sbjct: 71 ALPDSADADGITAAGRNGVLEIRIPK 96
>pdb|3GT6|A Chain A, Crystal Structure Of The Hspa From Xanthomonas Axonopodis
pdb|3GT6|B Chain B, Crystal Structure Of The Hspa From Xanthomonas Axonopodis
pdb|3GUF|A Chain A, Crystal Structure Of The Hspa From Xanthomonas Axonopodis
pdb|3GUF|B Chain B, Crystal Structure Of The Hspa From Xanthomonas Axonopodis
Length = 103
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 51/86 (59%), Gaps = 7/86 (8%)
Query: 60 VITLDIPRMKKDDAKIAVEENR-VLRVSGERKSDDYYKEEVEGDKWHRAERPFGKVWRQF 118
V+ D+P + D ++I V+ ++ +L + GERKS+ E +++ R ER +G R+F
Sbjct: 20 VLYADLPGI--DPSQIEVQMDKGILSIRGERKSES----STETERFSRIERRYGSFHRRF 73
Query: 119 RMPMSADLDHVKAHLENGVLRITVPK 144
+P SAD D + A NGVL I +PK
Sbjct: 74 ALPDSADADGITAAGRNGVLEIRIPK 99
>pdb|4ELD|A Chain A, Crystal Structure Of An Activated Variant Of Small Heat
Shock Protein Hsp16.5
pdb|4ELD|B Chain B, Crystal Structure Of An Activated Variant Of Small Heat
Shock Protein Hsp16.5
Length = 161
Score = 30.4 bits (67), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 10/32 (31%), Positives = 20/32 (62%)
Query: 113 KVWRQFRMPMSADLDHVKAHLENGVLRITVPK 144
+++R ++P + ++ A ENGVL + +PK
Sbjct: 118 EIYRTIKLPATVKEENASAKFENGVLSVILPK 149
>pdb|1SHS|A Chain A, Small Heat Shock Protein From Methanococcus Jannaschii
pdb|1SHS|B Chain B, Small Heat Shock Protein From Methanococcus Jannaschii
pdb|1SHS|C Chain C, Small Heat Shock Protein From Methanococcus Jannaschii
pdb|1SHS|D Chain D, Small Heat Shock Protein From Methanococcus Jannaschii
pdb|1SHS|E Chain E, Small Heat Shock Protein From Methanococcus Jannaschii
pdb|1SHS|F Chain F, Small Heat Shock Protein From Methanococcus Jannaschii
pdb|1SHS|G Chain G, Small Heat Shock Protein From Methanococcus Jannaschii
pdb|1SHS|H Chain H, Small Heat Shock Protein From Methanococcus Jannaschii
Length = 147
Score = 30.4 bits (67), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 10/32 (31%), Positives = 20/32 (62%)
Query: 113 KVWRQFRMPMSADLDHVKAHLENGVLRITVPK 144
+++R ++P + ++ A ENGVL + +PK
Sbjct: 104 EIYRTIKLPATVKEENASAKFENGVLSVILPK 135
>pdb|3ACS|A Chain A, Crystal Structure Of Cellvibrio Gilvus Cellobiose
Phosphorylase W488f Mutant
pdb|3ACS|B Chain B, Crystal Structure Of Cellvibrio Gilvus Cellobiose
Phosphorylase W488f Mutant
Length = 842
Score = 29.3 bits (64), Expect = 1.2, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 112 GKVWRQFRMPMSADLDHVKAHLENGVLRIT 141
G VW +P+ ADLDH +A G RIT
Sbjct: 98 GDVWTPSWLPVKADLDHFEARHGLGYSRIT 127
>pdb|2CQS|A Chain A, Crystal Structure Of Cellvibrio Gilvus Cellobiose
Phosphorylase Crystallized From Ammonium Sulfate
pdb|2CQS|B Chain B, Crystal Structure Of Cellvibrio Gilvus Cellobiose
Phosphorylase Crystallized From Ammonium Sulfate
pdb|2CQT|A Chain A, Crystal Structure Of Cellvibrio Gilvus Cellobiose
Phosphorylase Crystallized From SodiumPOTASSIUM
PHOSPHATE
pdb|2CQT|B Chain B, Crystal Structure Of Cellvibrio Gilvus Cellobiose
Phosphorylase Crystallized From SodiumPOTASSIUM
PHOSPHATE
pdb|3QFY|A Chain A, Crystal Structure Of Cellvibrio Gilvus Cellobiose
Phosphorylase Complexed With Sulfate And Isofagomine
pdb|3QFY|B Chain B, Crystal Structure Of Cellvibrio Gilvus Cellobiose
Phosphorylase Complexed With Sulfate And Isofagomine
pdb|3QFZ|A Chain A, Crystal Structure Of Cellvibrio Gilvus Cellobiose
Phosphorylase Complexed With Sulfate And
1-Deoxynojirimycin
pdb|3QFZ|B Chain B, Crystal Structure Of Cellvibrio Gilvus Cellobiose
Phosphorylase Complexed With Sulfate And
1-Deoxynojirimycin
pdb|3QG0|A Chain A, Crystal Structure Of Cellvibrio Gilvus Cellobiose
Phosphorylase Complexed With Phosphate And
1-Deoxynojirimycin
pdb|3QG0|B Chain B, Crystal Structure Of Cellvibrio Gilvus Cellobiose
Phosphorylase Complexed With Phosphate And
1-Deoxynojirimycin
Length = 842
Score = 29.3 bits (64), Expect = 1.2, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 112 GKVWRQFRMPMSADLDHVKAHLENGVLRIT 141
G VW +P+ ADLDH +A G RIT
Sbjct: 98 GDVWTPSWLPVKADLDHFEARHGLGYSRIT 127
>pdb|3AFJ|A Chain A, Crystal Structure Of Cellvibrio Gilvus Cellobiose
Phosphorylase Triple Mutant
pdb|3AFJ|B Chain B, Crystal Structure Of Cellvibrio Gilvus Cellobiose
Phosphorylase Triple Mutant
Length = 842
Score = 29.3 bits (64), Expect = 1.2, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 112 GKVWRQFRMPMSADLDHVKAHLENGVLRIT 141
G VW +P+ ADLDH +A G RIT
Sbjct: 98 GDVWTPSWLPVKADLDHFEARHGLGYSRIT 127
>pdb|3ACT|A Chain A, Crystal Structure Of Cellvibrio Gilvus Cellobiose
Phosphorylase Histidine Mutant
pdb|3ACT|B Chain B, Crystal Structure Of Cellvibrio Gilvus Cellobiose
Phosphorylase Histidine Mutant
Length = 842
Score = 29.3 bits (64), Expect = 1.2, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 112 GKVWRQFRMPMSADLDHVKAHLENGVLRIT 141
G VW +P+ ADLDH +A G RIT
Sbjct: 98 GDVWTPSWLPVKADLDHFEARHGLGYSRIT 127
>pdb|1K82|A Chain A, Crystal Structure Of E.Coli Formamidopyrimidine-Dna
Glycosylase (Fpg) Covalently Trapped With Dna
pdb|1K82|B Chain B, Crystal Structure Of E.Coli Formamidopyrimidine-Dna
Glycosylase (Fpg) Covalently Trapped With Dna
pdb|1K82|C Chain C, Crystal Structure Of E.Coli Formamidopyrimidine-Dna
Glycosylase (Fpg) Covalently Trapped With Dna
pdb|1K82|D Chain D, Crystal Structure Of E.Coli Formamidopyrimidine-Dna
Glycosylase (Fpg) Covalently Trapped With Dna
Length = 268
Score = 27.3 bits (59), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 22/112 (19%), Positives = 54/112 (48%), Gaps = 13/112 (11%)
Query: 1 NIDEHGIKANALMLYTRSPFFDVMFPMTEDPFRVLGQTLLTIPKGAEHHQT--------- 51
I+ H + A L R+ + +P++E+ +R+ Q +L++ + A++
Sbjct: 12 GIEPHLVGATILHAVVRNG--RLRWPVSEEIYRLSDQPVLSVQRRAKYLLLELPEGWIII 69
Query: 52 -LALTPTSHVITLDIPRMKKDDAKIAVEENRVLRVSGERKSDDY-YKEEVEG 101
L ++ + ++ ++P K D + + +VLR + R+ + + +E+EG
Sbjct: 70 HLGMSGSLRILPEELPPEKHDHVDLVMSNGKVLRYTDPRRFGAWLWTKELEG 121
>pdb|3P3A|A Chain A, Crystal Structure Of A Putative Thiosulfate
Sulfurtransferase From Mycobacterium Thermoresistible
pdb|3P3A|B Chain B, Crystal Structure Of A Putative Thiosulfate
Sulfurtransferase From Mycobacterium Thermoresistible
Length = 320
Score = 26.9 bits (58), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Query: 62 TLDIPRMKKDDAKIAVEENRVLRVSGERKSDDYYK-EEVEGDKWHRAERPFGKVWRQFRM 120
T P ++++DA I ++ VLRV G+ D +E G++ H + P R +
Sbjct: 167 TSGYPVVERNDAPIRAFKDDVLRVLGKEPLIDVRSPQEYTGERTHMPDYPEEGALRGGHI 226
Query: 121 PMSADLDHVKAHLENGVLR 139
P + + KA ++G R
Sbjct: 227 PTAVSVPWSKAAYDDGRFR 245
>pdb|1JK9|B Chain B, Heterodimer Between H48f-Ysod1 And Yccs
pdb|1JK9|D Chain D, Heterodimer Between H48f-Ysod1 And Yccs
Length = 249
Score = 26.6 bits (57), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 42/104 (40%), Gaps = 12/104 (11%)
Query: 30 DPFRVLGQTLLTIPKGAEHHQTLALTPTSHVITLDIPRMKKDDAK------IAVEENRVL 83
+ R G+ + G + +A+ T T+D KKD A + V EN+ L
Sbjct: 59 NTLRNCGKDAIIRGAGKPNSSAVAILETFQKYTID---QKKDTAVRGLARIVQVGENKTL 115
Query: 84 ---RVSGERKSDDYYKEEVEGDKWHRAERPFGKVWRQFRMPMSA 124
V+G ++ +Y+ E + GKVW +F P+
Sbjct: 116 FDITVNGVPEAGNYHASIHEKGDVSKGVESTGKVWHKFDEPIEC 159
>pdb|1QUP|A Chain A, Crystal Structure Of The Copper Chaperone For Superoxide
Dismutase
pdb|1QUP|B Chain B, Crystal Structure Of The Copper Chaperone For Superoxide
Dismutase
Length = 222
Score = 26.6 bits (57), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 42/104 (40%), Gaps = 12/104 (11%)
Query: 30 DPFRVLGQTLLTIPKGAEHHQTLALTPTSHVITLDIPRMKKDDAK------IAVEENRVL 83
+ R G+ + G + +A+ T T+D KKD A + V EN+ L
Sbjct: 58 NTLRNCGKDAIIRGAGKPNSSAVAILETFQKYTID---QKKDTAVRGLARIVQVGENKTL 114
Query: 84 ---RVSGERKSDDYYKEEVEGDKWHRAERPFGKVWRQFRMPMSA 124
V+G ++ +Y+ E + GKVW +F P+
Sbjct: 115 FDITVNGVPEAGNYHASIHEKGDVSKGVESTGKVWHKFDEPIEC 158
>pdb|3S4C|A Chain A, Lactose Phosphorylase In Complex With Sulfate
pdb|3S4D|A Chain A, Lactose Phosphorylase In A Ternary Complex With Cellobiose
And Sulfate
Length = 822
Score = 26.6 bits (57), Expect = 8.6, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 112 GKVWRQFRMPMSADLDHVKAHLENGVLRIT 141
G VW +P+ ADLDH +A G IT
Sbjct: 78 GDVWTPSWLPVKADLDHFEARHGLGYSTIT 107
>pdb|3RRS|A Chain A, Crystal Structure Analysis Of Cellobiose Phosphorylase
From Cellulomonas Uda
pdb|3RRS|B Chain B, Crystal Structure Analysis Of Cellobiose Phosphorylase
From Cellulomonas Uda
pdb|3RSY|A Chain A, Cellobiose Phosphorylase From Cellulomonas Uda In Complex
With Sulfate And Glycerol
pdb|3RSY|B Chain B, Cellobiose Phosphorylase From Cellulomonas Uda In Complex
With Sulfate And Glycerol
pdb|3S4A|A Chain A, Cellobiose Phosphorylase From Cellulomonas Uda In Complex
With Cellobiose
pdb|3S4A|B Chain B, Cellobiose Phosphorylase From Cellulomonas Uda In Complex
With Cellobiose
pdb|3S4B|A Chain A, Cellobiose Phosphorylase From Cellulomonas Uda In Complex
With Glucose
pdb|3S4B|B Chain B, Cellobiose Phosphorylase From Cellulomonas Uda In Complex
With Glucose
Length = 822
Score = 26.6 bits (57), Expect = 8.7, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 112 GKVWRQFRMPMSADLDHVKAHLENGVLRIT 141
G VW +P+ ADLDH +A G IT
Sbjct: 78 GDVWTPSWLPVKADLDHFEARHGLGYSTIT 107
>pdb|3BBO|I Chain I, Homology Model For The Spinach Chloroplast 50s Subunit
Fitted To 9.4a Cryo-Em Map Of The 70s Chlororibosome
Length = 223
Score = 26.2 bits (56), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 4/35 (11%)
Query: 58 SHVITLDIPRMKKDDAKIAVEENRVLRVSGERKSD 92
SH + + IP D K+ VEEN + VSG KS+
Sbjct: 153 SHPVKMQIP----DSLKVKVEENTRITVSGYDKSE 183
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.134 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,604,698
Number of Sequences: 62578
Number of extensions: 233835
Number of successful extensions: 505
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 486
Number of HSP's gapped (non-prelim): 23
length of query: 177
length of database: 14,973,337
effective HSP length: 92
effective length of query: 85
effective length of database: 9,216,161
effective search space: 783373685
effective search space used: 783373685
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (23.1 bits)