Query 037002
Match_columns 177
No_of_seqs 157 out of 1388
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 07:35:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037002.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037002hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11597 heat shock chaperone 100.0 1.5E-28 3.3E-33 185.7 12.4 104 49-162 34-138 (142)
2 PRK10743 heat shock protein Ib 100.0 4.9E-28 1.1E-32 182.2 12.5 100 50-159 37-137 (137)
3 COG0071 IbpA Molecular chapero 99.9 7E-27 1.5E-31 177.7 13.4 107 47-159 40-146 (146)
4 cd06472 ACD_ScHsp26_like Alpha 99.9 4.4E-26 9.6E-31 160.5 11.8 91 50-144 2-92 (92)
5 PF00011 HSP20: Hsp20/alpha cr 99.9 7.4E-25 1.6E-29 156.3 13.3 102 51-159 1-102 (102)
6 cd06471 ACD_LpsHSP_like Group 99.9 3E-24 6.6E-29 151.2 11.0 91 50-144 3-93 (93)
7 cd06497 ACD_alphaA-crystallin_ 99.9 1.5E-23 3.3E-28 146.1 10.6 82 51-144 4-86 (86)
8 cd06470 ACD_IbpA-B_like Alpha- 99.9 5.1E-23 1.1E-27 144.5 11.9 87 50-144 3-90 (90)
9 cd06478 ACD_HspB4-5-6 Alpha-cr 99.9 5.9E-23 1.3E-27 142.3 10.8 81 52-144 2-83 (83)
10 cd06498 ACD_alphaB-crystallin_ 99.9 6.6E-23 1.4E-27 142.4 10.5 82 52-145 2-84 (84)
11 cd06479 ACD_HspB7_like Alpha c 99.9 1.3E-22 2.9E-27 139.8 8.8 79 51-144 2-81 (81)
12 cd06476 ACD_HspB2_like Alpha c 99.9 5.2E-22 1.1E-26 137.5 10.5 79 54-144 4-83 (83)
13 cd06481 ACD_HspB9_like Alpha c 99.9 5.8E-22 1.3E-26 138.4 9.7 83 54-144 4-87 (87)
14 cd06475 ACD_HspB1_like Alpha c 99.9 1.8E-21 4E-26 135.6 10.4 82 50-143 3-85 (86)
15 cd06482 ACD_HspB10 Alpha cryst 99.9 1.8E-21 3.9E-26 135.9 9.4 80 55-143 6-86 (87)
16 cd06464 ACD_sHsps-like Alpha-c 99.9 1E-20 2.2E-25 130.3 11.2 87 52-144 2-88 (88)
17 cd06477 ACD_HspB3_Like Alpha c 99.9 7.4E-21 1.6E-25 131.7 10.3 78 54-143 4-82 (83)
18 cd06526 metazoan_ACD Alpha-cry 99.8 1.1E-20 2.5E-25 130.5 8.0 77 56-144 6-83 (83)
19 cd06480 ACD_HspB8_like Alpha-c 99.8 3.4E-18 7.4E-23 120.1 10.2 81 52-144 10-91 (91)
20 KOG3591 Alpha crystallins [Pos 99.8 1.9E-17 4.2E-22 129.1 14.2 102 51-165 66-168 (173)
21 KOG0710 Molecular chaperone (s 99.8 2.4E-18 5.2E-23 136.8 7.7 110 48-159 85-195 (196)
22 cd00298 ACD_sHsps_p23-like Thi 99.6 3E-14 6.5E-19 94.6 9.5 80 52-144 1-80 (80)
23 cd06469 p23_DYX1C1_like p23_li 99.3 1.6E-11 3.6E-16 83.0 9.4 70 53-147 2-71 (78)
24 cd06463 p23_like Proteins cont 99.0 3E-09 6.6E-14 71.8 9.7 75 53-147 2-76 (84)
25 PF05455 GvpH: GvpH; InterPro 98.8 2.7E-08 5.9E-13 77.4 9.3 75 51-148 95-171 (177)
26 cd06466 p23_CS_SGT1_like p23_l 98.7 8.6E-08 1.9E-12 65.4 8.5 76 52-147 2-77 (84)
27 PF04969 CS: CS domain; Inter 98.2 7E-05 1.5E-09 49.7 11.4 74 51-144 4-79 (79)
28 PF08190 PIH1: pre-RNA process 98.2 1E-05 2.2E-10 68.4 8.7 66 55-143 259-327 (328)
29 cd06489 p23_CS_hSgt1_like p23_ 97.9 0.00014 3E-09 49.8 8.9 75 52-146 2-76 (84)
30 cd06467 p23_NUDC_like p23_like 97.8 0.00024 5.2E-09 48.4 8.8 73 52-147 3-77 (85)
31 cd06493 p23_NUDCD1_like p23_NU 97.7 0.00075 1.6E-08 46.3 9.4 73 52-147 3-77 (85)
32 cd06465 p23_hB-ind1_like p23_l 97.6 0.00077 1.7E-08 48.3 9.8 74 52-146 5-78 (108)
33 cd06468 p23_CacyBP p23_like do 97.5 0.0023 5E-08 44.2 9.8 76 52-147 6-85 (92)
34 cd06488 p23_melusin_like p23_l 97.4 0.0026 5.6E-08 43.9 9.8 77 51-147 4-80 (87)
35 cd06494 p23_NUDCD2_like p23-li 96.8 0.017 3.7E-07 40.6 8.6 71 52-146 10-82 (93)
36 PLN03088 SGT1, suppressor of 96.0 0.047 1E-06 47.1 8.8 79 49-147 158-236 (356)
37 cd06492 p23_mNUDC_like p23-lik 96.0 0.11 2.4E-06 35.9 8.9 72 52-146 3-78 (87)
38 cd00237 p23 p23 binds heat sho 95.8 0.25 5.3E-06 35.5 10.4 75 51-147 5-79 (106)
39 KOG1309 Suppressor of G2 allel 95.1 0.087 1.9E-06 41.4 6.5 76 51-146 7-82 (196)
40 cd06490 p23_NCB5OR p23_like do 94.5 0.97 2.1E-05 31.0 10.0 75 51-147 2-80 (87)
41 cd06495 p23_NUDCD3_like p23-li 94.5 0.68 1.5E-05 33.1 9.3 75 52-146 9-86 (102)
42 cd06477 ACD_HspB3_Like Alpha c 79.7 4.1 8.9E-05 27.8 4.2 30 58-88 51-82 (83)
43 PF13349 DUF4097: Domain of un 78.8 20 0.00044 26.5 8.4 76 56-142 73-148 (166)
44 cd06471 ACD_LpsHSP_like Group 78.5 3.2 7E-05 28.4 3.5 33 55-88 60-92 (93)
45 cd06482 ACD_HspB10 Alpha cryst 77.6 5.2 0.00011 27.6 4.3 34 113-147 9-42 (87)
46 COG5091 SGT1 Suppressor of G2 75.6 2.1 4.7E-05 36.1 2.2 106 51-175 180-291 (368)
47 cd06470 ACD_IbpA-B_like Alpha- 73.4 13 0.00028 25.4 5.5 35 113-148 12-46 (90)
48 PRK10743 heat shock protein Ib 73.4 14 0.00031 27.6 6.0 32 114-146 47-78 (137)
49 cd06472 ACD_ScHsp26_like Alpha 72.6 5.8 0.00013 27.1 3.6 33 55-88 58-91 (92)
50 cd06476 ACD_HspB2_like Alpha c 72.6 6.7 0.00015 26.7 3.8 32 113-145 8-39 (83)
51 cd06478 ACD_HspB4-5-6 Alpha-cr 71.4 9.8 0.00021 25.7 4.4 32 113-145 8-39 (83)
52 cd06497 ACD_alphaA-crystallin_ 71.4 9.7 0.00021 26.0 4.4 32 113-145 11-42 (86)
53 cd06464 ACD_sHsps-like Alpha-c 71.0 8.3 0.00018 25.3 4.0 33 55-88 54-87 (88)
54 cd06526 metazoan_ACD Alpha-cry 69.8 9.8 0.00021 25.4 4.1 34 113-147 8-41 (83)
55 cd06479 ACD_HspB7_like Alpha c 69.4 11 0.00024 25.5 4.3 32 113-145 9-40 (81)
56 PRK11597 heat shock chaperone 67.5 20 0.00044 27.0 5.8 32 114-146 45-76 (142)
57 cd06480 ACD_HspB8_like Alpha-c 65.8 14 0.0003 25.7 4.3 32 57-88 58-90 (91)
58 PF14913 DPCD: DPCD protein fa 65.6 45 0.00097 26.6 7.5 69 55-146 94-170 (194)
59 cd06498 ACD_alphaB-crystallin_ 64.2 13 0.00029 25.2 3.9 31 113-144 8-38 (84)
60 cd06475 ACD_HspB1_like Alpha c 63.6 15 0.00032 25.0 4.1 32 113-145 11-42 (86)
61 cd06481 ACD_HspB9_like Alpha c 63.1 26 0.00055 23.9 5.2 33 113-146 8-40 (87)
62 KOG1667 Zn2+-binding protein M 62.9 53 0.0011 27.5 7.7 79 51-148 218-296 (320)
63 PRK05518 rpl6p 50S ribosomal p 61.8 43 0.00093 26.3 6.8 45 70-143 13-57 (180)
64 PF00011 HSP20: Hsp20/alpha cr 60.9 25 0.00054 24.0 4.9 32 113-145 8-39 (102)
65 TIGR03653 arch_L6P archaeal ri 59.7 54 0.0012 25.5 7.0 45 70-143 7-51 (170)
66 KOG2265 Nuclear distribution p 57.3 39 0.00085 26.5 5.8 72 52-146 23-96 (179)
67 PF08308 PEGA: PEGA domain; I 56.2 31 0.00067 22.0 4.5 37 54-90 32-68 (71)
68 TIGR03654 L6_bact ribosomal pr 56.1 56 0.0012 25.4 6.6 20 70-90 11-30 (175)
69 KOG3158 HSP90 co-chaperone p23 55.8 66 0.0014 25.3 6.8 73 52-146 12-84 (180)
70 PF04972 BON: BON domain; Int 54.7 24 0.00052 22.0 3.7 25 66-91 12-36 (64)
71 PTZ00027 60S ribosomal protein 52.4 62 0.0013 25.6 6.4 47 70-143 13-59 (190)
72 PF01954 DUF104: Protein of un 51.4 15 0.00032 23.6 2.2 17 127-143 3-19 (60)
73 PRK05498 rplF 50S ribosomal pr 49.1 68 0.0015 25.0 6.1 21 70-91 12-32 (178)
74 cd06469 p23_DYX1C1_like p23_li 48.7 53 0.0012 21.1 4.8 36 55-91 34-70 (78)
75 PF00347 Ribosomal_L6: Ribosom 48.5 40 0.00086 21.8 4.1 20 70-90 2-21 (77)
76 COG0071 IbpA Molecular chapero 46.6 62 0.0013 24.0 5.4 32 114-146 52-83 (146)
77 CHL00140 rpl6 ribosomal protei 46.3 71 0.0015 24.9 5.8 21 70-91 12-32 (178)
78 TIGR02934 nifT_nitrog probable 41.6 29 0.00062 22.9 2.4 24 134-161 9-32 (67)
79 cd01759 PLAT_PL PLAT/LH2 domai 41.6 1.3E+02 0.0029 21.7 8.3 45 114-164 46-91 (113)
80 KOG3260 Calcyclin-binding prot 41.1 94 0.002 24.8 5.7 76 52-146 79-154 (224)
81 cd06467 p23_NUDC_like p23_like 40.3 89 0.0019 20.4 4.9 31 113-143 9-39 (85)
82 cd02175 GH16_lichenase lichena 40.1 80 0.0017 24.8 5.4 50 69-123 30-80 (212)
83 PF06988 NifT: NifT/FixU prote 38.3 34 0.00075 22.3 2.4 22 134-159 9-30 (64)
84 PF01491 Frataxin_Cyay: Fratax 37.1 71 0.0015 22.8 4.2 19 128-146 31-49 (109)
85 KOG3591 Alpha crystallins [Pos 36.9 29 0.00062 27.1 2.2 30 62-91 120-150 (173)
86 KOG3413 Mitochondrial matrix p 36.6 18 0.00038 27.7 1.0 26 120-145 65-90 (156)
87 PTZ00179 60S ribosomal protein 36.3 1.2E+02 0.0025 24.0 5.7 21 70-91 12-32 (189)
88 PF07873 YabP: YabP family; I 35.7 32 0.00069 22.2 2.0 23 68-91 23-45 (66)
89 PF14730 DUF4468: Domain of un 35.2 1.4E+02 0.0031 20.2 5.7 16 129-144 70-85 (91)
90 cd06494 p23_NUDCD2_like p23-li 30.3 99 0.0021 21.4 3.9 30 113-142 16-45 (93)
91 cd08023 GH16_laminarinase_like 30.0 2.6E+02 0.0057 22.0 6.9 55 66-123 33-91 (235)
92 PF14814 UB2H: Bifunctional tr 29.5 93 0.002 21.0 3.6 43 100-142 29-73 (85)
93 TIGR02856 spore_yqfC sporulati 28.8 43 0.00094 22.9 1.8 23 68-91 41-63 (85)
94 PRK11198 LysM domain/BON super 27.7 82 0.0018 23.6 3.4 25 66-91 38-62 (147)
95 cd02178 GH16_beta_agarase Beta 27.2 1.2E+02 0.0027 24.6 4.6 44 75-122 60-109 (258)
96 cd00503 Frataxin Frataxin is a 27.0 65 0.0014 22.9 2.6 19 127-145 28-46 (105)
97 PF08845 SymE_toxin: Toxin Sym 26.7 83 0.0018 19.9 2.7 24 63-87 33-57 (57)
98 cd07698 IgC_MHC_I_alpha3 Class 26.6 2E+02 0.0044 19.2 6.6 27 56-82 14-40 (93)
99 KOG0100 Molecular chaperones G 26.0 3E+02 0.0065 25.0 6.9 58 110-170 485-545 (663)
100 PRK00446 cyaY frataxin-like pr 25.5 73 0.0016 22.7 2.6 18 129-146 29-46 (105)
101 TIGR02892 spore_yabP sporulati 25.3 59 0.0013 22.4 2.0 23 68-91 22-44 (85)
102 TIGR03421 FeS_CyaY iron donor 24.8 66 0.0014 22.8 2.2 17 129-145 27-43 (102)
103 cd02180 GH16_fungal_KRE6_gluca 24.2 1.8E+02 0.004 24.5 5.2 49 69-122 39-90 (295)
104 COG0097 RplF Ribosomal protein 22.8 1.6E+02 0.0035 23.1 4.2 43 70-141 12-54 (178)
105 PF08300 HCV_NS5a_1a: Hepatiti 22.0 1.2E+02 0.0026 19.6 2.8 19 128-146 29-47 (62)
106 PRK13726 conjugal transfer pil 21.8 1.5E+02 0.0032 23.4 3.9 21 70-91 130-150 (188)
107 cd02182 GH16_Strep_laminarinas 21.5 2E+02 0.0044 23.3 4.8 46 70-122 45-98 (259)
108 PF14014 DUF4230: Protein of u 21.2 78 0.0017 23.4 2.2 33 115-147 43-80 (157)
109 PF05455 GvpH: GvpH; InterPro 20.8 3.5E+02 0.0077 21.2 5.7 36 55-91 134-169 (177)
110 PF13620 CarboxypepD_reg: Carb 20.6 1.3E+02 0.0029 19.2 3.0 31 55-85 46-77 (82)
111 PF14545 DBB: Dof, BCAP, and B 20.3 2.9E+02 0.0063 20.9 5.0 34 55-88 47-83 (142)
No 1
>PRK11597 heat shock chaperone IbpB; Provisional
Probab=99.96 E-value=1.5e-28 Score=185.74 Aligned_cols=104 Identities=22% Similarity=0.304 Sum_probs=91.0
Q ss_pred ccceee-eCCeEEEEEEcCCCCCCCeEEEEecCcEEEEEEEEecCCccceeecCceEEEEeeccceEEEEEECCcccccC
Q 037002 49 HQTLAL-TPTSHVITLDIPRMKKDDAKIAVEENRVLRVSGERKSDDYYKEEVEGDKWHRAERPFGKVWRQFRMPMSADLD 127 (177)
Q Consensus 49 ~~~i~e-~~~~y~i~~~lPG~~~edI~V~~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~E~~~~~f~r~~~LP~~vd~~ 127 (177)
..+|.+ ++++|+|+++|||++++||+|.+++ +.|+|+|+++. + .++.+|+++||++|+|.|+|.||++||.+
T Consensus 34 ~vdI~e~~~~~y~v~adlPGv~kedi~V~v~~-~~LtI~ge~~~----~--~~~~~~~~~Er~~g~F~R~f~LP~~vd~~ 106 (142)
T PRK11597 34 PYNIEKSDDNHYRITLALAGFRQEDLDIQLEG-TRLTVKGTPEQ----P--EKEVKWLHQGLVNQPFSLSFTLAENMEVS 106 (142)
T ss_pred cEEEEEcCCCEEEEEEEeCCCCHHHeEEEEEC-CEEEEEEEEcc----c--cCCCcEEEEEEeCcEEEEEEECCCCcccC
Confidence 356887 5789999999999999999999999 99999999754 2 35678999999999999999999999998
Q ss_pred CeEEEEeCCEEEEEEeccCcccCCCCeEEEEecCC
Q 037002 128 HVKAHLENGVLRITVPKLVEEKKRQPKVINIDEEP 162 (177)
Q Consensus 128 ~i~A~~~~GvL~I~lPK~~~~~~~~~~~I~I~~~~ 162 (177)
+|+|+||||+|+|||..++ ..++++|+|+..+
T Consensus 107 --~A~~~nGVL~I~lPK~~~~-~~~~rkI~I~~~~ 138 (142)
T PRK11597 107 --GATFVNGLLHIDLIRNEPE-AIAPQRIAISERP 138 (142)
T ss_pred --cCEEcCCEEEEEEeccCcc-ccCCcEEEECCcc
Confidence 6999999999999997443 3468999998765
No 2
>PRK10743 heat shock protein IbpA; Provisional
Probab=99.95 E-value=4.9e-28 Score=182.25 Aligned_cols=100 Identities=17% Similarity=0.340 Sum_probs=87.8
Q ss_pred ccee-eeCCeEEEEEEcCCCCCCCeEEEEecCcEEEEEEEEecCCccceeecCceEEEEeeccceEEEEEECCcccccCC
Q 037002 50 QTLA-LTPTSHVITLDIPRMKKDDAKIAVEENRVLRVSGERKSDDYYKEEVEGDKWHRAERPFGKVWRQFRMPMSADLDH 128 (177)
Q Consensus 50 ~~i~-e~~~~y~i~~~lPG~~~edI~V~~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~E~~~~~f~r~~~LP~~vd~~~ 128 (177)
.++. +++++|+|+++||||+++||+|++.+ +.|+|+|+++. + .++.+|+++||++|+|.|+|.||++||.++
T Consensus 37 ~di~ee~~~~~~v~aelPGv~kedi~V~v~~-~~LtI~ge~~~----~--~~~~~~~~~Er~~g~F~R~~~LP~~Vd~~~ 109 (137)
T PRK10743 37 YNVELVDENHYRIAIAVAGFAESELEITAQD-NLLVVKGAHAD----E--QKERTYLYQGIAERNFERKFQLAENIHVRG 109 (137)
T ss_pred EEEEEcCCCEEEEEEECCCCCHHHeEEEEEC-CEEEEEEEECc----c--ccCCcEEEEEEECCEEEEEEECCCCcccCc
Confidence 4587 48999999999999999999999999 89999999765 2 245679999999999999999999999994
Q ss_pred eEEEEeCCEEEEEEeccCcccCCCCeEEEEe
Q 037002 129 VKAHLENGVLRITVPKLVEEKKRQPKVINID 159 (177)
Q Consensus 129 i~A~~~~GvL~I~lPK~~~~~~~~~~~I~I~ 159 (177)
|+|+||||+|+|||..++ ..++|+|+|+
T Consensus 110 --A~~~dGVL~I~lPK~~~~-~~~~r~I~I~ 137 (137)
T PRK10743 110 --ANLVNGLLYIDLERVIPE-AKKPRRIEIN 137 (137)
T ss_pred --CEEeCCEEEEEEeCCCcc-ccCCeEEeeC
Confidence 999999999999997443 3468899884
No 3
>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=7e-27 Score=177.73 Aligned_cols=107 Identities=36% Similarity=0.598 Sum_probs=96.4
Q ss_pred ccccceeeeCCeEEEEEEcCCCCCCCeEEEEecCcEEEEEEEEecCCccceeecCceEEEEeeccceEEEEEECCccccc
Q 037002 47 EHHQTLALTPTSHVITLDIPRMKKDDAKIAVEENRVLRVSGERKSDDYYKEEVEGDKWHRAERPFGKVWRQFRMPMSADL 126 (177)
Q Consensus 47 ~~~~~i~e~~~~y~i~~~lPG~~~edI~V~~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~E~~~~~f~r~~~LP~~vd~ 126 (177)
.+..+|.+++++|.|.++||||+++||+|++.+ +.|+|+|++.. +...+...|+++|+++|.|.|+|+||..|+.
T Consensus 40 ~P~vdi~e~~~~~~I~~elPG~~kedI~I~~~~-~~l~I~g~~~~----~~~~~~~~~~~~e~~~~~f~r~~~Lp~~v~~ 114 (146)
T COG0071 40 TPPVDIEETDDEYRITAELPGVDKEDIEITVEG-NTLTIRGEREE----EEEEEEEGYLRRERAYGEFERTFRLPEKVDP 114 (146)
T ss_pred CCcEEEEEcCCEEEEEEEcCCCChHHeEEEEEC-CEEEEEEEecc----cccccCCceEEEEEEeeeEEEEEECcccccc
Confidence 344568999999999999999999999999999 89999999987 5566788999999999999999999999999
Q ss_pred CCeEEEEeCCEEEEEEeccCcccCCCCeEEEEe
Q 037002 127 DHVKAHLENGVLRITVPKLVEEKKRQPKVINID 159 (177)
Q Consensus 127 ~~i~A~~~~GvL~I~lPK~~~~~~~~~~~I~I~ 159 (177)
+.|+|.|+||||+|+|||..++. ...++|+|+
T Consensus 115 ~~~~A~~~nGvL~I~lpk~~~~~-~~~~~i~I~ 146 (146)
T COG0071 115 EVIKAKYKNGLLTVTLPKAEPEE-KKPKRIEIE 146 (146)
T ss_pred cceeeEeeCcEEEEEEecccccc-ccCceeecC
Confidence 99999999999999999998763 457788774
No 4
>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative st
Probab=99.94 E-value=4.4e-26 Score=160.52 Aligned_cols=91 Identities=56% Similarity=0.919 Sum_probs=83.7
Q ss_pred cceeeeCCeEEEEEEcCCCCCCCeEEEEecCcEEEEEEEEecCCccceeecCceEEEEeeccceEEEEEECCcccccCCe
Q 037002 50 QTLALTPTSHVITLDIPRMKKDDAKIAVEENRVLRVSGERKSDDYYKEEVEGDKWHRAERPFGKVWRQFRMPMSADLDHV 129 (177)
Q Consensus 50 ~~i~e~~~~y~i~~~lPG~~~edI~V~~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~E~~~~~f~r~~~LP~~vd~~~i 129 (177)
.+|.|++++|+|.++||||+++||+|++.+++.|+|+|++.. +...++..++++|+.+|+|.|+|+||.+|+.++|
T Consensus 2 ~dv~E~~~~~~i~~~lPGv~~edi~i~v~~~~~L~I~g~~~~----~~~~~~~~~~~~e~~~g~f~r~i~LP~~v~~~~i 77 (92)
T cd06472 2 VDWKETPEAHVFKADVPGVKKEDVKVEVEDGRVLRISGERKK----EEEKKGDDWHRVERSSGRFVRRFRLPENADADEV 77 (92)
T ss_pred ccEEEcCCeEEEEEECCCCChHhEEEEEeCCCEEEEEEEecc----cccccCCCEEEEEEeccEEEEEEECCCCCCHHHC
Confidence 358999999999999999999999999987359999999876 3445677899999999999999999999999999
Q ss_pred EEEEeCCEEEEEEec
Q 037002 130 KAHLENGVLRITVPK 144 (177)
Q Consensus 130 ~A~~~~GvL~I~lPK 144 (177)
+|+|+||+|+|++||
T Consensus 78 ~A~~~nGvL~I~lPK 92 (92)
T cd06472 78 KAFLENGVLTVTVPK 92 (92)
T ss_pred EEEEECCEEEEEecC
Confidence 999999999999998
No 5
>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry.; InterPro: IPR002068 Prokaryotic and eukaryotic organisms respond to heat shock or other environmental stress by inducing the synthesis of proteins collectively known as heat-shock proteins (hsp) []. Amongst them is a family of proteins with an average molecular weight of 20 Kd, known as the hsp20 proteins []. These seem to act as chaperones that can protect other proteins against heat-induced denaturation and aggregation. Hsp20 proteins seem to form large heterooligomeric aggregates. Structurally, this family is characterised by the presence of a conserved C-terminal domain of about 100 residues.; PDB: 2BOL_B 3N3E_B 2H50_P 2H53_F 2BYU_L 1GME_D 3VQM_J 3VQK_E 3VQL_A 3AAC_A ....
Probab=99.93 E-value=7.4e-25 Score=156.32 Aligned_cols=102 Identities=42% Similarity=0.674 Sum_probs=85.2
Q ss_pred ceeeeCCeEEEEEEcCCCCCCCeEEEEecCcEEEEEEEEecCCccceeecCceEEEEeeccceEEEEEECCcccccCCeE
Q 037002 51 TLALTPTSHVITLDIPRMKKDDAKIAVEENRVLRVSGERKSDDYYKEEVEGDKWHRAERPFGKVWRQFRMPMSADLDHVK 130 (177)
Q Consensus 51 ~i~e~~~~y~i~~~lPG~~~edI~V~~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~E~~~~~f~r~~~LP~~vd~~~i~ 130 (177)
+|.+++++|.|.++||||.+++|+|++.+ +.|+|+|.+.. ...+..++.+|++++.|.|+|+||.++|.++|+
T Consensus 1 di~e~~~~~~i~~~lpG~~~edi~I~~~~-~~L~I~g~~~~------~~~~~~~~~~~~~~~~f~r~~~lP~~vd~~~i~ 73 (102)
T PF00011_consen 1 DIKEDEDEYIIKVDLPGFDKEDIKIKVDD-NKLVISGKRKE------EEEDDRYYRSERRYGSFERSIRLPEDVDPDKIK 73 (102)
T ss_dssp EEEESSSEEEEEEE-TTS-GGGEEEEEET-TEEEEEEEEEG------EECTTCEEEE-S-SEEEEEEEE-STTB-GGG-E
T ss_pred CeEECCCEEEEEEECCCCChHHEEEEEec-Cccceeceeee------eeeeeeeeecccccceEEEEEcCCCcCCcceEE
Confidence 47889999999999999999999999999 89999999873 345667788899999999999999999999999
Q ss_pred EEEeCCEEEEEEeccCcccCCCCeEEEEe
Q 037002 131 AHLENGVLRITVPKLVEEKKRQPKVINID 159 (177)
Q Consensus 131 A~~~~GvL~I~lPK~~~~~~~~~~~I~I~ 159 (177)
|.|+||+|+|++||........++.|+|+
T Consensus 74 a~~~~GvL~I~~pk~~~~~~~~~~~I~I~ 102 (102)
T PF00011_consen 74 ASYENGVLTITIPKKEEEEDSQPKRIPIK 102 (102)
T ss_dssp EEETTSEEEEEEEBSSSCTTSSSCEE-ET
T ss_pred EEecCCEEEEEEEccccccCCCCeEEEeC
Confidence 99999999999999988756678999985
No 6
>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18.5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic me
Probab=99.91 E-value=3e-24 Score=151.20 Aligned_cols=91 Identities=33% Similarity=0.582 Sum_probs=81.2
Q ss_pred cceeeeCCeEEEEEEcCCCCCCCeEEEEecCcEEEEEEEEecCCccceeecCceEEEEeeccceEEEEEECCcccccCCe
Q 037002 50 QTLALTPTSHVITLDIPRMKKDDAKIAVEENRVLRVSGERKSDDYYKEEVEGDKWHRAERPFGKVWRQFRMPMSADLDHV 129 (177)
Q Consensus 50 ~~i~e~~~~y~i~~~lPG~~~edI~V~~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~E~~~~~f~r~~~LP~~vd~~~i 129 (177)
.+|.+++++|+|.++|||++++||+|.+.+ +.|+|+|++.... +....+..|+++|+.+|.|.|+|.|| +++.++|
T Consensus 3 ~di~e~~~~~~i~~~lPGv~~edi~v~~~~-~~L~I~g~~~~~~--~~~~~~~~~~~~e~~~g~f~r~~~lp-~v~~~~i 78 (93)
T cd06471 3 TDIKETDDEYIVEADLPGFKKEDIKLDYKD-GYLTISAKRDESK--DEKDKKGNYIRRERYYGSFSRSFYLP-NVDEEEI 78 (93)
T ss_pred eeEEEcCCEEEEEEECCCCCHHHeEEEEEC-CEEEEEEEEcccc--ccccccCCEEEEeeeccEEEEEEECC-CCCHHHC
Confidence 458899999999999999999999999999 8999999997621 12233458999999999999999999 7999999
Q ss_pred EEEEeCCEEEEEEec
Q 037002 130 KAHLENGVLRITVPK 144 (177)
Q Consensus 130 ~A~~~~GvL~I~lPK 144 (177)
+|.|+||+|+|++||
T Consensus 79 ~A~~~dGvL~I~lPK 93 (93)
T cd06471 79 KAKYENGVLKITLPK 93 (93)
T ss_pred EEEEECCEEEEEEcC
Confidence 999999999999998
No 7
>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 does not belong to this group. Mutations inHspB4 have been associated with Autosomal Dominant Congenital Cataract (ADCC). The chaperone-like functions of HspB4 are considered important for maintaining lens transparency and preventing cataract.
Probab=99.90 E-value=1.5e-23 Score=146.15 Aligned_cols=82 Identities=20% Similarity=0.430 Sum_probs=73.7
Q ss_pred ceeeeCCeEEEEEEcCCCCCCCeEEEEecCcEEEEEEEEecCCccceeecCceEEEEeeccceEEEEEECCcccccCCeE
Q 037002 51 TLALTPTSHVITLDIPRMKKDDAKIAVEENRVLRVSGERKSDDYYKEEVEGDKWHRAERPFGKVWRQFRMPMSADLDHVK 130 (177)
Q Consensus 51 ~i~e~~~~y~i~~~lPG~~~edI~V~~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~E~~~~~f~r~~~LP~~vd~~~i~ 130 (177)
.+.+++++|.|.++||||+++||+|++.+ +.|+|+|++.. . .++..|+++| |.|+|.||++||.++|+
T Consensus 4 ~v~e~~~~~~v~~dlpG~~~edi~V~v~~-~~L~I~g~~~~----~--~~~~~~~~~e-----f~R~~~LP~~Vd~~~i~ 71 (86)
T cd06497 4 EVRSDRDKFTIYLDVKHFSPEDLTVKVLD-DYVEIHGKHSE----R--QDDHGYISRE-----FHRRYRLPSNVDQSAIT 71 (86)
T ss_pred eEEEcCCEEEEEEECCCCCHHHeEEEEEC-CEEEEEEEEcc----e--eCCCCEEEEE-----EEEEEECCCCCChHHeE
Confidence 48889999999999999999999999999 89999999754 2 2345677765 99999999999999999
Q ss_pred EEE-eCCEEEEEEec
Q 037002 131 AHL-ENGVLRITVPK 144 (177)
Q Consensus 131 A~~-~~GvL~I~lPK 144 (177)
|+| +||+|+|++||
T Consensus 72 A~~~~dGvL~I~~PK 86 (86)
T cd06497 72 CSLSADGMLTFSGPK 86 (86)
T ss_pred EEeCCCCEEEEEecC
Confidence 999 89999999998
No 8
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins. IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6
Probab=99.90 E-value=5.1e-23 Score=144.52 Aligned_cols=87 Identities=26% Similarity=0.391 Sum_probs=78.2
Q ss_pred cceeee-CCeEEEEEEcCCCCCCCeEEEEecCcEEEEEEEEecCCccceeecCceEEEEeeccceEEEEEECCcccccCC
Q 037002 50 QTLALT-PTSHVITLDIPRMKKDDAKIAVEENRVLRVSGERKSDDYYKEEVEGDKWHRAERPFGKVWRQFRMPMSADLDH 128 (177)
Q Consensus 50 ~~i~e~-~~~y~i~~~lPG~~~edI~V~~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~E~~~~~f~r~~~LP~~vd~~~ 128 (177)
.++.++ +++|+|.++|||+++++|+|.+.+ +.|+|+|++.. +.. ++.+|+++|+.+|+|.|+|.||.+++..
T Consensus 3 ~di~e~~~~~~~v~~~lPG~~kedi~v~~~~-~~L~I~g~~~~----~~~-~~~~~~~~e~~~g~f~R~~~LP~~vd~~- 75 (90)
T cd06470 3 YNIEKTGENNYRITLAVAGFSEDDLEIEVEN-NQLTVTGKKAD----EEN-EEREYLHRGIAKRAFERSFNLADHVKVK- 75 (90)
T ss_pred eeeEEcCCCeEEEEEECCCCCHHHeEEEEEC-CEEEEEEEEcc----ccc-CCCcEEEEEEeceEEEEEEECCCCceEC-
Confidence 357776 499999999999999999999999 89999999987 333 6678999999999999999999999885
Q ss_pred eEEEEeCCEEEEEEec
Q 037002 129 VKAHLENGVLRITVPK 144 (177)
Q Consensus 129 i~A~~~~GvL~I~lPK 144 (177)
+|.|+||+|+|+||+
T Consensus 76 -~A~~~~GvL~I~l~~ 90 (90)
T cd06470 76 -GAELENGLLTIDLER 90 (90)
T ss_pred -eeEEeCCEEEEEEEC
Confidence 899999999999985
No 9
>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 on the other hand is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. HspB5's functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its ol
Probab=99.90 E-value=5.9e-23 Score=142.27 Aligned_cols=81 Identities=20% Similarity=0.452 Sum_probs=72.0
Q ss_pred eeeeCCeEEEEEEcCCCCCCCeEEEEecCcEEEEEEEEecCCccceeecCceEEEEeeccceEEEEEECCcccccCCeEE
Q 037002 52 LALTPTSHVITLDIPRMKKDDAKIAVEENRVLRVSGERKSDDYYKEEVEGDKWHRAERPFGKVWRQFRMPMSADLDHVKA 131 (177)
Q Consensus 52 i~e~~~~y~i~~~lPG~~~edI~V~~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~E~~~~~f~r~~~LP~~vd~~~i~A 131 (177)
+.+++++|.|.++||||+++||+|++.+ +.|+|+|++.. . .++..|+++| |.|+|.||.+||.++|+|
T Consensus 2 ~~~~~~~~~v~~dlpG~~~edI~V~v~~-~~L~I~g~~~~----~--~~~~~~~~~e-----f~R~~~LP~~vd~~~i~A 69 (83)
T cd06478 2 VRLDKDRFSVNLDVKHFSPEELSVKVLG-DFVEIHGKHEE----R--QDEHGFISRE-----FHRRYRLPPGVDPAAITS 69 (83)
T ss_pred eeecCceEEEEEECCCCCHHHeEEEEEC-CEEEEEEEEce----E--cCCCCEEEEE-----EEEEEECCCCcChHHeEE
Confidence 5679999999999999999999999999 89999999754 2 2344577665 999999999999999999
Q ss_pred EE-eCCEEEEEEec
Q 037002 132 HL-ENGVLRITVPK 144 (177)
Q Consensus 132 ~~-~~GvL~I~lPK 144 (177)
.| +||+|+|++||
T Consensus 70 ~~~~dGvL~I~~PK 83 (83)
T cd06478 70 SLSADGVLTISGPR 83 (83)
T ss_pred EECCCCEEEEEecC
Confidence 99 79999999998
No 10
>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. HspB4 does not belong to this group. HspB5 shows increased synthesis in response to stress. HspB5 is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. Its functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its oligomerization and anti-apoptotic activ
Probab=99.89 E-value=6.6e-23 Score=142.35 Aligned_cols=82 Identities=18% Similarity=0.434 Sum_probs=72.1
Q ss_pred eeeeCCeEEEEEEcCCCCCCCeEEEEecCcEEEEEEEEecCCccceeecCceEEEEeeccceEEEEEECCcccccCCeEE
Q 037002 52 LALTPTSHVITLDIPRMKKDDAKIAVEENRVLRVSGERKSDDYYKEEVEGDKWHRAERPFGKVWRQFRMPMSADLDHVKA 131 (177)
Q Consensus 52 i~e~~~~y~i~~~lPG~~~edI~V~~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~E~~~~~f~r~~~LP~~vd~~~i~A 131 (177)
+.+++++|.|.++||||+++||+|++.+ +.|+|+|++.. +. ++..|+++ .|.|+|.||.+||.++|+|
T Consensus 2 ~~~~~~~~~v~~dlpG~~~edi~V~v~~-~~L~I~g~~~~----~~--~~~~~~~~-----eF~R~~~LP~~vd~~~i~A 69 (84)
T cd06498 2 MRLEKDKFSVNLDVKHFSPEELKVKVLG-DFIEIHGKHEE----RQ--DEHGFISR-----EFQRKYRIPADVDPLTITS 69 (84)
T ss_pred eEeCCceEEEEEECCCCCHHHeEEEEEC-CEEEEEEEEcc----ee--CCCCEEEE-----EEEEEEECCCCCChHHcEE
Confidence 5668999999999999999999999999 89999998754 22 34556655 4999999999999999999
Q ss_pred EE-eCCEEEEEEecc
Q 037002 132 HL-ENGVLRITVPKL 145 (177)
Q Consensus 132 ~~-~~GvL~I~lPK~ 145 (177)
+| +||+|+|++||+
T Consensus 70 ~~~~dGvL~I~lPk~ 84 (84)
T cd06498 70 SLSPDGVLTVCGPRK 84 (84)
T ss_pred EeCCCCEEEEEEeCC
Confidence 99 599999999985
No 11
>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB7 is a 25-kDa protein, preferentially expressed in heart and skeletal muscle. It binds the cytoskeleton protein alpha-filamin (also known as actin-binding protein 280). The expression of HspB7 is increased during rat muscle aging. Its expression is also modulated in obesity implicating this protein in this and related metabolic disorders. As the human gene encoding HspB7 is mapped to chromosome 1p36.23-p34.3 it is a positional candidate for several dystrophies and myopathies.
Probab=99.88 E-value=1.3e-22 Score=139.84 Aligned_cols=79 Identities=15% Similarity=0.307 Sum_probs=71.4
Q ss_pred ceeeeCCeEEEEEEcCCCCCCCeEEEEecCcEEEEEEEEecCCccceeecCceEEEEeeccceEEEEEECCcccccCCeE
Q 037002 51 TLALTPTSHVITLDIPRMKKDDAKIAVEENRVLRVSGERKSDDYYKEEVEGDKWHRAERPFGKVWRQFRMPMSADLDHVK 130 (177)
Q Consensus 51 ~i~e~~~~y~i~~~lPG~~~edI~V~~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~E~~~~~f~r~~~LP~~vd~~~i~ 130 (177)
++.+++++|.|.++||||+|+||+|++.+ +.|+|+|+++. +. + ..+|+|.|+|.||.+||.++|+
T Consensus 2 ~v~e~~~~~~v~~dlpG~~pedi~V~v~~-~~L~I~ger~~----~~----~------~~~g~F~R~~~LP~~vd~e~v~ 66 (81)
T cd06479 2 NVKTLGDTYQFAVDVSDFSPEDIIVTTSN-NQIEVHAEKLA----SD----G------TVMNTFTHKCQLPEDVDPTSVS 66 (81)
T ss_pred CccCcCCeEEEEEECCCCCHHHeEEEEEC-CEEEEEEEEec----cC----C------CEEEEEEEEEECCCCcCHHHeE
Confidence 47889999999999999999999999999 89999999865 21 1 2478999999999999999999
Q ss_pred EEE-eCCEEEEEEec
Q 037002 131 AHL-ENGVLRITVPK 144 (177)
Q Consensus 131 A~~-~~GvL~I~lPK 144 (177)
|.| +||+|+|++++
T Consensus 67 A~l~~~GvL~I~~~~ 81 (81)
T cd06479 67 SSLGEDGTLTIKARR 81 (81)
T ss_pred EEecCCCEEEEEecC
Confidence 998 99999999986
No 12
>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB2 is preferentially and constitutively expressed in skeletal muscle and heart. HspB2 shows homooligomeric activity and forms aggregates in muscle cytosol. Although its expression is not induced by heat shock, it redistributes to the insoluble fraction in response to heat shock. In the mouse heart, HspB2 plays a role in maintaining energetic balance, by protecting cardiac energetics during ischemia/reperfusion, and allowing for increased work during acute inotropic challenge. hHspB2 [previously also known as myotonic dystrophy protein kinase (DMPK) binding protein (MKBP)] is selectively up-regulated in skeletal muscles from myotonic dystrophy patients.
Probab=99.88 E-value=5.2e-22 Score=137.53 Aligned_cols=79 Identities=22% Similarity=0.363 Sum_probs=69.2
Q ss_pred eeCCeEEEEEEcCCCCCCCeEEEEecCcEEEEEEEEecCCccceeecCceEEEEeeccceEEEEEECCcccccCCeEEEE
Q 037002 54 LTPTSHVITLDIPRMKKDDAKIAVEENRVLRVSGERKSDDYYKEEVEGDKWHRAERPFGKVWRQFRMPMSADLDHVKAHL 133 (177)
Q Consensus 54 e~~~~y~i~~~lPG~~~edI~V~~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~E~~~~~f~r~~~LP~~vd~~~i~A~~ 133 (177)
-++++|.|.++||||+++||+|++.+ +.|+|+|++.. +. +...|+++ .|.|+|.||.+||.++|+|.|
T Consensus 4 ~~~d~y~v~~dlpG~~~edi~V~v~~-~~L~I~g~~~~-----~~-~~~~~~~~-----eF~R~~~LP~~vd~~~v~A~~ 71 (83)
T cd06476 4 SEDDKYQVFLDVCHFTPDEITVRTVD-NLLEVSARHPQ-----RM-DRHGFVSR-----EFTRTYILPMDVDPLLVRASL 71 (83)
T ss_pred ccCCeEEEEEEcCCCCHHHeEEEEEC-CEEEEEEEEcc-----ee-cCCCEEEE-----EEEEEEECCCCCChhhEEEEe
Confidence 37899999999999999999999999 89999999854 22 33346554 499999999999999999999
Q ss_pred e-CCEEEEEEec
Q 037002 134 E-NGVLRITVPK 144 (177)
Q Consensus 134 ~-~GvL~I~lPK 144 (177)
. ||+|+|++||
T Consensus 72 ~~dGvL~I~~Pr 83 (83)
T cd06476 72 SHDGILCIQAPR 83 (83)
T ss_pred cCCCEEEEEecC
Confidence 5 9999999997
No 13
>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB9 is expressed exclusively in the normal testis and in various tumor samples and is a cancer/testis antigen. hHspB9 interacts with TCTEL1 (T-complex testis expressed protein -1), a subunit of dynein. hHspB9 and TCTEL1 are co-expressed in similar cells within the testis and in tumor cells. Included in this group is Xenopus Hsp30, a developmentally-regulated heat-inducible molecular chaperone.
Probab=99.87 E-value=5.8e-22 Score=138.44 Aligned_cols=83 Identities=25% Similarity=0.428 Sum_probs=72.5
Q ss_pred eeCCeEEEEEEcCCCCCCCeEEEEecCcEEEEEEEEecCCccceeecCceEEEEeeccceEEEEEECCcccccCCeEEEE
Q 037002 54 LTPTSHVITLDIPRMKKDDAKIAVEENRVLRVSGERKSDDYYKEEVEGDKWHRAERPFGKVWRQFRMPMSADLDHVKAHL 133 (177)
Q Consensus 54 e~~~~y~i~~~lPG~~~edI~V~~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~E~~~~~f~r~~~LP~~vd~~~i~A~~ 133 (177)
+..++|.|.++||||+++||+|++.+ +.|+|+|++.. +...+...|. +.+|+|.|+|.||.+||.++|+|.|
T Consensus 4 ~~~d~~~v~~dlpG~~~edI~V~v~~-~~L~I~g~~~~----~~~~~~~~~~---~~~~~F~R~~~LP~~Vd~~~i~A~~ 75 (87)
T cd06481 4 DGKEGFSLKLDVRGFSPEDLSVRVDG-RKLVVTGKREK----KNEDEKGSFS---YEYQEFVREAQLPEHVDPEAVTCSL 75 (87)
T ss_pred CccceEEEEEECCCCChHHeEEEEEC-CEEEEEEEEee----ecccCCCcEE---EEeeEEEEEEECCCCcChHHeEEEe
Confidence 36789999999999999999999999 99999999876 3333334554 3488999999999999999999999
Q ss_pred -eCCEEEEEEec
Q 037002 134 -ENGVLRITVPK 144 (177)
Q Consensus 134 -~~GvL~I~lPK 144 (177)
+||||+|++|+
T Consensus 76 ~~dGvL~I~~P~ 87 (87)
T cd06481 76 SPSGHLHIRAPR 87 (87)
T ss_pred CCCceEEEEcCC
Confidence 99999999995
No 14
>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Hsp27 shows enhanced synthesis in response to stress. It is a molecular chaperone which interacts with a large number of different proteins. It is found in many types of human cells including breast, uterus, cervix, platelets and cancer cells. Hsp27 has diverse cellular functions including, chaperoning, regulation of actin polymerization, keratinocyte differentiation, regulation of inflammatory pathways in keratinocytes, and protection from oxidative stress through modulating glutathione levels. It is also a subunit of AUF1-containing protein complexes. It has been linked to several transduction pathways regulating cellular functions including differentiat
Probab=99.86 E-value=1.8e-21 Score=135.64 Aligned_cols=82 Identities=17% Similarity=0.406 Sum_probs=71.5
Q ss_pred cceeeeCCeEEEEEEcCCCCCCCeEEEEecCcEEEEEEEEecCCccceeecCceEEEEeeccceEEEEEECCcccccCCe
Q 037002 50 QTLALTPTSHVITLDIPRMKKDDAKIAVEENRVLRVSGERKSDDYYKEEVEGDKWHRAERPFGKVWRQFRMPMSADLDHV 129 (177)
Q Consensus 50 ~~i~e~~~~y~i~~~lPG~~~edI~V~~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~E~~~~~f~r~~~LP~~vd~~~i 129 (177)
.+|.+++++|.|.++||||++++|+|++.+ +.|+|+|++.. .+ +...+. .++|.|+|.||.+||.++|
T Consensus 3 ~~i~e~~~~~~v~~dlPG~~~edi~V~v~~-~~L~I~g~~~~----~~--~~~~~~-----~~~f~R~f~LP~~vd~~~v 70 (86)
T cd06475 3 SEIRQTADRWKVSLDVNHFAPEELVVKTKD-GVVEITGKHEE----KQ--DEHGFV-----SRCFTRKYTLPPGVDPTAV 70 (86)
T ss_pred ceEEEcCCeEEEEEECCCCCHHHEEEEEEC-CEEEEEEEECc----Cc--CCCCEE-----EEEEEEEEECCCCCCHHHc
Confidence 458999999999999999999999999999 89999999865 22 223343 3479999999999999999
Q ss_pred EEEEe-CCEEEEEEe
Q 037002 130 KAHLE-NGVLRITVP 143 (177)
Q Consensus 130 ~A~~~-~GvL~I~lP 143 (177)
+|.|. ||+|+|++|
T Consensus 71 ~A~~~~dGvL~I~lP 85 (86)
T cd06475 71 TSSLSPDGILTVEAP 85 (86)
T ss_pred EEEECCCCeEEEEec
Confidence 99996 999999998
No 15
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.
Probab=99.86 E-value=1.8e-21 Score=135.87 Aligned_cols=80 Identities=21% Similarity=0.430 Sum_probs=70.3
Q ss_pred eCCeEEEEEEcCCCCCCCeEEEEecCcEEEEEEEEecCCccceeecCceEEEEeeccceEEEEEECCcccccCCeEEEEe
Q 037002 55 TPTSHVITLDIPRMKKDDAKIAVEENRVLRVSGERKSDDYYKEEVEGDKWHRAERPFGKVWRQFRMPMSADLDHVKAHLE 134 (177)
Q Consensus 55 ~~~~y~i~~~lPG~~~edI~V~~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~E~~~~~f~r~~~LP~~vd~~~i~A~~~ 134 (177)
.+++|+|.++||||+++||+|++.+ +.|+|+|+++. +++..+ .+||++|+|.|+|.||.+||.++|+|+|+
T Consensus 6 ~~~~~~v~adlPG~~kedI~V~v~~-~~L~I~ger~~----~~e~~~----~~er~~g~F~R~f~LP~~Vd~d~i~A~~~ 76 (87)
T cd06482 6 DSSNVLASVDVCGFEPDQVKVKVKD-GKVQVSAEREN----RYDCLG----SKKYSYMNICKEFSLPPGVDEKDVTYSYG 76 (87)
T ss_pred cCCEEEEEEECCCCCHHHeEEEEEC-CEEEEEEEEec----ccccCC----ccEEEEEEEEEEEECCCCcChHHcEEEEc
Confidence 6899999999999999999999999 99999999976 222222 24788999999999999999999999996
Q ss_pred CC-EEEEEEe
Q 037002 135 NG-VLRITVP 143 (177)
Q Consensus 135 ~G-vL~I~lP 143 (177)
|| +|+|..|
T Consensus 77 ~~~~l~i~~~ 86 (87)
T cd06482 77 LGSVVKIETP 86 (87)
T ss_pred CCCEEEEeeC
Confidence 66 9999987
No 16
>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=99.85 E-value=1e-20 Score=130.34 Aligned_cols=87 Identities=47% Similarity=0.765 Sum_probs=79.1
Q ss_pred eeeeCCeEEEEEEcCCCCCCCeEEEEecCcEEEEEEEEecCCccceeecCceEEEEeeccceEEEEEECCcccccCCeEE
Q 037002 52 LALTPTSHVITLDIPRMKKDDAKIAVEENRVLRVSGERKSDDYYKEEVEGDKWHRAERPFGKVWRQFRMPMSADLDHVKA 131 (177)
Q Consensus 52 i~e~~~~y~i~~~lPG~~~edI~V~~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~E~~~~~f~r~~~LP~~vd~~~i~A 131 (177)
+.+++++|+|.++||||++++|+|++.+ +.|.|+|++.. ... ....+...++.++.|.|+|.||.++|.+.++|
T Consensus 2 i~e~~~~~~i~~~lpg~~~~~i~V~v~~-~~l~I~g~~~~----~~~-~~~~~~~~~~~~~~f~r~~~LP~~vd~~~i~a 75 (88)
T cd06464 2 VYETDDAYVVEADLPGFKKEDIKVEVED-GVLTISGEREE----EEE-EEENYLRRERSYGSFSRSFRLPEDVDPDKIKA 75 (88)
T ss_pred cEEcCCEEEEEEECCCCCHHHeEEEEEC-CEEEEEEEEec----ccc-cCCcEEEEEEeCcEEEEEEECCCCcCHHHcEE
Confidence 6678999999999999999999999999 99999999987 222 22278889999999999999999999999999
Q ss_pred EEeCCEEEEEEec
Q 037002 132 HLENGVLRITVPK 144 (177)
Q Consensus 132 ~~~~GvL~I~lPK 144 (177)
.|.||+|+|++||
T Consensus 76 ~~~~G~L~I~~pk 88 (88)
T cd06464 76 SLENGVLTITLPK 88 (88)
T ss_pred EEeCCEEEEEEcC
Confidence 9999999999997
No 17
>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB3 is expressed in adult skeletal muscle, smooth muscle, and heart, and in several other fetal tissues. In muscle cells HspB3 forms an oligomeric 150 kDa complex with myotonic dystrophy protein kinase-binding protein (MKBP/ HspB2), this complex may comprise one of two independent muscle-cell specific chaperone systems. The expression of HspB3 is induced during muscle differentiation controlled by the myogenic factor MyoD. HspB3 may also interact with Hsp22 (HspB8).
Probab=99.85 E-value=7.4e-21 Score=131.69 Aligned_cols=78 Identities=21% Similarity=0.327 Sum_probs=68.2
Q ss_pred eeCCeEEEEEEcCCCCCCCeEEEEecCcEEEEEEEEecCCccceeecCceEEEEeeccceEEEEEECCcccccCCeEEEE
Q 037002 54 LTPTSHVITLDIPRMKKDDAKIAVEENRVLRVSGERKSDDYYKEEVEGDKWHRAERPFGKVWRQFRMPMSADLDHVKAHL 133 (177)
Q Consensus 54 e~~~~y~i~~~lPG~~~edI~V~~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~E~~~~~f~r~~~LP~~vd~~~i~A~~ 133 (177)
+++++|.|+++||||+++||+|++.+ +.|+|+|++.. +. +...+.. ++|.|+|+||.+|+.++|+|.|
T Consensus 4 e~~~~~~v~~dlpG~~~edI~V~v~~-~~L~I~ge~~~----~~--~~~~~~~-----r~F~R~~~LP~~Vd~~~v~A~~ 71 (83)
T cd06477 4 EGKPMFQILLDVVQFRPEDIIIQVFE-GWLLIKGQHGV----RM--DEHGFIS-----RSFTRQYQLPDGVEHKDLSAML 71 (83)
T ss_pred cCCceEEEEEEcCCCCHHHeEEEEEC-CEEEEEEEEcc----cc--CCCCEEE-----EEEEEEEECCCCcchheEEEEE
Confidence 58999999999999999999999999 99999999866 22 2233432 3899999999999999999998
Q ss_pred -eCCEEEEEEe
Q 037002 134 -ENGVLRITVP 143 (177)
Q Consensus 134 -~~GvL~I~lP 143 (177)
+||||+|+.|
T Consensus 72 ~~dGvL~I~~~ 82 (83)
T cd06477 72 CHDGILVVETK 82 (83)
T ss_pred cCCCEEEEEec
Confidence 8999999986
No 18
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=99.83 E-value=1.1e-20 Score=130.53 Aligned_cols=77 Identities=29% Similarity=0.489 Sum_probs=67.4
Q ss_pred CCeEEEEEEcCCCCCCCeEEEEecCcEEEEEEEEecCCccceeecCceEEEEeeccceEEEEEECCcccccCCeEEEEeC
Q 037002 56 PTSHVITLDIPRMKKDDAKIAVEENRVLRVSGERKSDDYYKEEVEGDKWHRAERPFGKVWRQFRMPMSADLDHVKAHLEN 135 (177)
Q Consensus 56 ~~~y~i~~~lPG~~~edI~V~~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~E~~~~~f~r~~~LP~~vd~~~i~A~~~~ 135 (177)
+++|.|.++||||+++||+|++.+ +.|+|+|++.. ... ... +.+++|.|+|.||.+||.++|+|.|.|
T Consensus 6 ~~~~~v~~dlpG~~~edI~v~v~~-~~L~I~g~~~~----~~~--~~~-----~~~~~f~r~~~LP~~vd~~~i~A~~~~ 73 (83)
T cd06526 6 DEKFQVTLDVKGFKPEELKVKVSD-NKLVVEGKHEE----RED--EHG-----YVSREFTRRYQLPEGVDPDSVTSSLSS 73 (83)
T ss_pred CeeEEEEEECCCCCHHHcEEEEEC-CEEEEEEEEee----ecc--CCC-----EEEEEEEEEEECCCCCChHHeEEEeCC
Confidence 369999999999999999999999 99999999876 211 222 235789999999999999999999987
Q ss_pred -CEEEEEEec
Q 037002 136 -GVLRITVPK 144 (177)
Q Consensus 136 -GvL~I~lPK 144 (177)
|+|+|++||
T Consensus 74 ~GvL~I~~Pk 83 (83)
T cd06526 74 DGVLTIEAPK 83 (83)
T ss_pred CcEEEEEecC
Confidence 999999997
No 19
>cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21.6 KDa small heat shock protein (sHsp) HspB8, also denoted as Hsp22 in humans, and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. A chaperone complex formed of HspB8 and Bag3 stimulates degradation of protein complexes by macroautophagy. HspB8 also forms complexes with Hsp27 (HspB1), MKBP (HspB2), HspB3, alphaB-crystallin (HspB5), Hsp20 (HspB6), and cvHsp (HspB7). These latter interactions may depend on phosphorylation of the respective partner sHsp. HspB8 may participate in the regulation of cell proliferation, cardiac hypertrophy, apoptosis, and carcinogenesis. Point mutations in HspB8 have been correlated with the development of several congenital neurological diseases, including Charcot Marie tooth disease and distal motor neuropathy type II.
Probab=99.77 E-value=3.4e-18 Score=120.14 Aligned_cols=81 Identities=17% Similarity=0.314 Sum_probs=70.3
Q ss_pred eeeeCCeEEEEEEcCCCCCCCeEEEEecCcEEEEEEEEecCCccceeecCceEEEEeeccceEEEEEECCcccccCCeEE
Q 037002 52 LALTPTSHVITLDIPRMKKDDAKIAVEENRVLRVSGERKSDDYYKEEVEGDKWHRAERPFGKVWRQFRMPMSADLDHVKA 131 (177)
Q Consensus 52 i~e~~~~y~i~~~lPG~~~edI~V~~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~E~~~~~f~r~~~LP~~vd~~~i~A 131 (177)
+..++++|.|.+++.||+++||+|++.+ +.|+|+|++.. +. ++ ..++. ++|.|+|.||.+||.+.|+|
T Consensus 10 ~~~~~~~f~v~ldv~gF~pEDL~Vkv~~-~~L~V~Gkh~~----~~-~e-~g~~~-----r~F~R~~~LP~~Vd~~~v~s 77 (91)
T cd06480 10 PPNSSEPWKVCVNVHSFKPEELTVKTKD-GFVEVSGKHEE----QQ-KE-GGIVS-----KNFTKKIQLPPEVDPVTVFA 77 (91)
T ss_pred CCCCCCcEEEEEEeCCCCHHHcEEEEEC-CEEEEEEEECc----cc-CC-CCEEE-----EEEEEEEECCCCCCchhEEE
Confidence 5558999999999999999999999999 89999999876 22 22 23443 57999999999999999999
Q ss_pred EEe-CCEEEEEEec
Q 037002 132 HLE-NGVLRITVPK 144 (177)
Q Consensus 132 ~~~-~GvL~I~lPK 144 (177)
.|. ||+|+|.+|.
T Consensus 78 ~l~~dGvL~IeaP~ 91 (91)
T cd06480 78 SLSPEGLLIIEAPQ 91 (91)
T ss_pred EeCCCCeEEEEcCC
Confidence 995 9999999983
No 20
>KOG3591 consensus Alpha crystallins [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=1.9e-17 Score=129.05 Aligned_cols=102 Identities=21% Similarity=0.407 Sum_probs=87.8
Q ss_pred ceeeeCCeEEEEEEcCCCCCCCeEEEEecCcEEEEEEEEecCCccceeecCceEEEEeeccceEEEEEECCcccccCCeE
Q 037002 51 TLALTPTSHVITLDIPRMKKDDAKIAVEENRVLRVSGERKSDDYYKEEVEGDKWHRAERPFGKVWRQFRMPMSADLDHVK 130 (177)
Q Consensus 51 ~i~e~~~~y~i~~~lPG~~~edI~V~~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~E~~~~~f~r~~~LP~~vd~~~i~ 130 (177)
.+..+.++|.|.+|+..|+|++|.|++.+ +.|.|+|++.+ .+ ++..+..| .|.|+|.||.+||+++|+
T Consensus 66 ~~~~~~~~F~V~lDV~~F~PeEl~Vk~~~-~~l~V~gkHee-----r~-d~~G~v~R-----~F~R~y~LP~~vdp~~V~ 133 (173)
T KOG3591|consen 66 EIVNDKDKFEVNLDVHQFKPEELKVKTDD-NTLEVEGKHEE-----KE-DEHGYVSR-----SFVRKYLLPEDVDPTSVT 133 (173)
T ss_pred ccccCCCcEEEEEEcccCcccceEEEeCC-CEEEEEeeecc-----cc-CCCCeEEE-----EEEEEecCCCCCChhheE
Confidence 46679999999999999999999999999 89999999866 22 44455544 599999999999999999
Q ss_pred EEE-eCCEEEEEEeccCcccCCCCeEEEEecCCCCC
Q 037002 131 AHL-ENGVLRITVPKLVEEKKRQPKVINIDEEPGNS 165 (177)
Q Consensus 131 A~~-~~GvL~I~lPK~~~~~~~~~~~I~I~~~~~~~ 165 (177)
++| .||+|+|++||.+.... ..|.|+|+..+..+
T Consensus 134 S~LS~dGvLtI~ap~~~~~~~-~er~ipI~~~~~~~ 168 (173)
T KOG3591|consen 134 STLSSDGVLTIEAPKPPPKQD-NERSIPIEQVGPSA 168 (173)
T ss_pred EeeCCCceEEEEccCCCCcCc-cceEEeEeecCccc
Confidence 999 99999999999876533 58999999887443
No 21
>KOG0710 consensus Molecular chaperone (small heat-shock protein Hsp26/Hsp42) [Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=2.4e-18 Score=136.81 Aligned_cols=110 Identities=42% Similarity=0.733 Sum_probs=92.6
Q ss_pred cccceeeeCCeEEEEEEcCCCCCCCeEEEEecCcEEEEEEEEecCCccceeecCceEEEEeeccceEEEEEECCcccccC
Q 037002 48 HHQTLALTPTSHVITLDIPRMKKDDAKIAVEENRVLRVSGERKSDDYYKEEVEGDKWHRAERPFGKVWRQFRMPMSADLD 127 (177)
Q Consensus 48 ~~~~i~e~~~~y~i~~~lPG~~~edI~V~~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~E~~~~~f~r~~~LP~~vd~~ 127 (177)
..+++.++++.|++.+++||++.++|+|.++++++|.|+|++..+. ++...+..|+..|+.+|.|.|.|.||++++.+
T Consensus 85 ~~~~v~e~~~~~~~~~~~Pgl~ke~iKv~~~~~~~l~isGe~~~e~--e~~~~~~~~~~~E~~~g~F~r~~~lPenv~~d 162 (196)
T KOG0710|consen 85 VPWDVKESPDAHEFKVDLPGLKKEDIKVEVEDEKVLTISGERKKEE--EESGSGKKWKRVERKLGKFKRRFELPENVDVD 162 (196)
T ss_pred CCcccccCCCceEEEeeCCCCCchhceEEeccCcEEEEeccccccc--ccccCCccceeehhcccceEeeecCCccccHH
Confidence 3445788999999999999999999999999955899999998832 22236678899999999999999999999999
Q ss_pred CeEEEEeCCEEEEEEeccCcc-cCCCCeEEEEe
Q 037002 128 HVKAHLENGVLRITVPKLVEE-KKRQPKVINID 159 (177)
Q Consensus 128 ~i~A~~~~GvL~I~lPK~~~~-~~~~~~~I~I~ 159 (177)
.|+|.|+||||+|++||.... +....+.|.|+
T Consensus 163 ~ikA~~~nGVL~VvvpK~~~~~~~~~v~~i~i~ 195 (196)
T KOG0710|consen 163 EIKAEMENGVLTVVVPKLEPLLKKPKVRQIAIS 195 (196)
T ss_pred HHHHHhhCCeEEEEEecccccccCCccceeecc
Confidence 999999999999999999873 23345555553
No 22
>cd00298 ACD_sHsps_p23-like This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins. sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is this ACD. sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps. p23 is a cochaperone of the Hsp90 chaperoning pathway. It binds Hsp90 and participates in the folding of a number of Hsp90 clients including the progesterone receptor. p23 also has a passive chaperoning activity. p23 in addition may act as the cytosolic prostaglandin E2 synthase. Included in this family is the p23-like C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1) and the p23-like domains of human butyrate-induced transcript 1 (hB-ind
Probab=99.57 E-value=3e-14 Score=94.64 Aligned_cols=80 Identities=46% Similarity=0.753 Sum_probs=70.4
Q ss_pred eeeeCCeEEEEEEcCCCCCCCeEEEEecCcEEEEEEEEecCCccceeecCceEEEEeeccceEEEEEECCcccccCCeEE
Q 037002 52 LALTPTSHVITLDIPRMKKDDAKIAVEENRVLRVSGERKSDDYYKEEVEGDKWHRAERPFGKVWRQFRMPMSADLDHVKA 131 (177)
Q Consensus 52 i~e~~~~y~i~~~lPG~~~edI~V~~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~E~~~~~f~r~~~LP~~vd~~~i~A 131 (177)
|.++++.|.|++++||+.+++|.|.+.+ +.|.|+|.+... .. .+...+.|.+++.||..++.+.++|
T Consensus 1 ~~q~~~~v~i~i~~~~~~~~~i~v~~~~-~~l~v~~~~~~~----~~--------~~~~~~~~~~~~~L~~~i~~~~~~~ 67 (80)
T cd00298 1 WYQTDDEVVVTVDLPGVKKEDIKVEVED-NVLTISGKREEE----EE--------RERSYGEFERSFELPEDVDPEKSKA 67 (80)
T ss_pred CEEcCCEEEEEEECCCCCHHHeEEEEEC-CEEEEEEEEcCC----Cc--------ceEeeeeEEEEEECCCCcCHHHCEE
Confidence 3467899999999999999999999999 999999998651 11 3344668999999999999999999
Q ss_pred EEeCCEEEEEEec
Q 037002 132 HLENGVLRITVPK 144 (177)
Q Consensus 132 ~~~~GvL~I~lPK 144 (177)
.+.+|+|.|++||
T Consensus 68 ~~~~~~l~i~l~K 80 (80)
T cd00298 68 SLENGVLEITLPK 80 (80)
T ss_pred EEECCEEEEEEcC
Confidence 9999999999997
No 23
>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1. The human gene encoding this protein is a positional candidate gene for developmental dyslexia (DD), it is located on 15q21.3 by the DYX1 DD susceptibility locus (15q15-21). Independent association studies have reported conflicting results. However, association of short-term memory, which plays a role in DD, with a variant within the DYX1C1 gene has been reported. Most proteins belonging to this group contain a C-terminal tetratricopeptide repeat (TPR) protein binding region.
Probab=99.32 E-value=1.6e-11 Score=83.04 Aligned_cols=70 Identities=20% Similarity=0.219 Sum_probs=63.5
Q ss_pred eeeCCeEEEEEEcCCCCCCCeEEEEecCcEEEEEEEEecCCccceeecCceEEEEeeccceEEEEEECCcccccCCeEEE
Q 037002 53 ALTPTSHVITLDIPRMKKDDAKIAVEENRVLRVSGERKSDDYYKEEVEGDKWHRAERPFGKVWRQFRMPMSADLDHVKAH 132 (177)
Q Consensus 53 ~e~~~~y~i~~~lPG~~~edI~V~~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~E~~~~~f~r~~~LP~~vd~~~i~A~ 132 (177)
..+++.+.|++++||+++++|+|.+.+ +.|.|++ . .|.+.+.||..|++++.+|.
T Consensus 2 ~Qt~~~v~i~i~~p~v~~~~v~v~~~~-~~l~i~~---~---------------------~~~~~~~l~~~I~~e~~~~~ 56 (78)
T cd06469 2 SQTDEDVKISVPLKGVKTSKVDIFCSD-LYLKVNF---P---------------------PYLFELDLAAPIDDEKSSAK 56 (78)
T ss_pred cccCCEEEEEEEeCCCccccceEEEec-CEEEEcC---C---------------------CEEEEEeCcccccccccEEE
Confidence 458899999999999999999999999 8899877 2 27888999999999999999
Q ss_pred EeCCEEEEEEeccCc
Q 037002 133 LENGVLRITVPKLVE 147 (177)
Q Consensus 133 ~~~GvL~I~lPK~~~ 147 (177)
+.+|.|.|+|||...
T Consensus 57 ~~~~~l~i~L~K~~~ 71 (78)
T cd06469 57 IGNGVLVFTLVKKEP 71 (78)
T ss_pred EeCCEEEEEEEeCCC
Confidence 999999999999753
No 24
>cd06463 p23_like Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1. Both are co-chaperones for the heat shock protein (Hsp) 90. p23 binds Hsp90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis. Both p23 and Sba1p can regulate telomerase activity. This group includes domains similar to the C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1). Sgt1 interacts with multiple protein complexes and has the features of a co-chaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. This group also includes the p23_like domains of
Probab=99.04 E-value=3e-09 Score=71.77 Aligned_cols=75 Identities=20% Similarity=0.134 Sum_probs=65.6
Q ss_pred eeeCCeEEEEEEcCCCCCCCeEEEEecCcEEEEEEEEecCCccceeecCceEEEEeeccceEEEEEECCcccccCCeEEE
Q 037002 53 ALTPTSHVITLDIPRMKKDDAKIAVEENRVLRVSGERKSDDYYKEEVEGDKWHRAERPFGKVWRQFRMPMSADLDHVKAH 132 (177)
Q Consensus 53 ~e~~~~y~i~~~lPG~~~edI~V~~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~E~~~~~f~r~~~LP~~vd~~~i~A~ 132 (177)
..+++.+.|.+.+||..++++.|.+.+ +.|.|++.... .+.|...+.|+..|++++.++.
T Consensus 2 ~Q~~~~v~i~v~~~~~~~~~~~v~~~~-~~l~i~~~~~~-------------------~~~~~~~~~L~~~I~~~~s~~~ 61 (84)
T cd06463 2 YQTLDEVTITIPLKDVTKKDVKVEFTP-KSLTVSVKGGG-------------------GKEYLLEGELFGPIDPEESKWT 61 (84)
T ss_pred cccccEEEEEEEcCCCCccceEEEEec-CEEEEEeeCCC-------------------CCceEEeeEccCccchhhcEEE
Confidence 357899999999999999999999999 89999987431 1247778899999999999999
Q ss_pred EeCCEEEEEEeccCc
Q 037002 133 LENGVLRITVPKLVE 147 (177)
Q Consensus 133 ~~~GvL~I~lPK~~~ 147 (177)
+.+|.|.|+|+|...
T Consensus 62 ~~~~~l~i~L~K~~~ 76 (84)
T cd06463 62 VEDRKIEITLKKKEP 76 (84)
T ss_pred EeCCEEEEEEEECCC
Confidence 999999999999864
No 25
>PF05455 GvpH: GvpH; InterPro: IPR008633 This family consists of archaeal GvpH proteins which are thought to be involved in gas vesicle synthesis [].
Probab=98.83 E-value=2.7e-08 Score=77.38 Aligned_cols=75 Identities=19% Similarity=0.328 Sum_probs=57.7
Q ss_pred ceeeeCC-eEEEEEEcCCCCCCC-eEEEEecCcEEEEEEEEecCCccceeecCceEEEEeeccceEEEEEECCcccccCC
Q 037002 51 TLALTPT-SHVITLDIPRMKKDD-AKIAVEENRVLRVSGERKSDDYYKEEVEGDKWHRAERPFGKVWRQFRMPMSADLDH 128 (177)
Q Consensus 51 ~i~e~~~-~y~i~~~lPG~~~ed-I~V~~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~E~~~~~f~r~~~LP~~vd~~~ 128 (177)
++.+.++ ..+|.++|||++.++ |+|.+.. ..+.|...... .+.+++.||.. +.+.
T Consensus 95 dtre~dDge~~VvAdLPGVs~dd~idV~l~~-d~~~L~i~~~~---------------------~~~krv~L~~~-~~e~ 151 (177)
T PF05455_consen 95 DTRERDDGELVVVADLPGVSDDDAIDVTLDD-DEGALTIRVGE---------------------KYLKRVALPWP-DPEI 151 (177)
T ss_pred eeEecCCCcEEEEEeCCCCCcccceeeEeec-CCceEEEecCC---------------------ceEeeEecCCC-ccce
Confidence 4666566 699999999999888 9999985 34444444322 25678899966 6888
Q ss_pred eEEEEeCCEEEEEEeccCcc
Q 037002 129 VKAHLENGVLRITVPKLVEE 148 (177)
Q Consensus 129 i~A~~~~GvL~I~lPK~~~~ 148 (177)
++|+|+||||.|.+-+....
T Consensus 152 ~~~t~nNgILEIri~~~~~~ 171 (177)
T PF05455_consen 152 TSATFNNGILEIRIRRTEES 171 (177)
T ss_pred eeEEEeCceEEEEEeecCCC
Confidence 99999999999999887543
No 26
>cd06466 p23_CS_SGT1_like p23_like domain similar to the C-terminal CHORD-SGT1 (CS) domain of Sgt1 (suppressor of G2 allele of Skp1). Sgt1 interacts with multiple protein complexes and has the features of a cochaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. ScSgt1 is needed for the G1/S and G2/M cell-cycle transitions, and for assembly of the core kinetochore complex (CBF3) via activation of Ctf13, the F-box protein. Binding of Hsp82 (a yeast Hsp90 homologue) to ScSgt1, promotes the binding of Sgt1 to Skp1 and of Skp1 to Ctf13. Some proteins in this group have an SGT1-specific (SGS) domain at the extreme C-terminus. The ScSgt1-SGS domain binds adenylate cyclase. The hSgt1-SGS domain interacts with some S100 family proteins, and studies sug
Probab=98.74 E-value=8.6e-08 Score=65.39 Aligned_cols=76 Identities=21% Similarity=0.136 Sum_probs=65.5
Q ss_pred eeeeCCeEEEEEEcCCCCCCCeEEEEecCcEEEEEEEEecCCccceeecCceEEEEeeccceEEEEEECCcccccCCeEE
Q 037002 52 LALTPTSHVITLDIPRMKKDDAKIAVEENRVLRVSGERKSDDYYKEEVEGDKWHRAERPFGKVWRQFRMPMSADLDHVKA 131 (177)
Q Consensus 52 i~e~~~~y~i~~~lPG~~~edI~V~~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~E~~~~~f~r~~~LP~~vd~~~i~A 131 (177)
|..+++.+.|.+.+||+.++++.|.+.+ +.|.|++.... .+.|...+.|+..|+++..++
T Consensus 2 W~Qt~~~v~i~v~~~~~~~~~v~v~~~~-~~l~i~~~~~~-------------------~~~~~~~~~L~~~I~~~~s~~ 61 (84)
T cd06466 2 WYQTDTSVTVTIYAKNVDKEDVKVEFNE-QSLSVSIILPG-------------------GSEYQLELDLFGPIDPEQSKV 61 (84)
T ss_pred ccccCCEEEEEEEECCCCHHHCEEEEec-CEEEEEEECCC-------------------CCeEEEecccccccCchhcEE
Confidence 5678999999999999999999999999 89999877321 113667788999999999999
Q ss_pred EEeCCEEEEEEeccCc
Q 037002 132 HLENGVLRITVPKLVE 147 (177)
Q Consensus 132 ~~~~GvL~I~lPK~~~ 147 (177)
.+.+|.|.|+|.|...
T Consensus 62 ~~~~~~vei~L~K~~~ 77 (84)
T cd06466 62 SVLPTKVEITLKKAEP 77 (84)
T ss_pred EEeCeEEEEEEEcCCC
Confidence 9999999999999753
No 27
>PF04969 CS: CS domain; InterPro: IPR017447 The function of the CS domain is unknown. The CS domain is sometimes found C-terminal to the CHORD domain (IPR007051 from INTERPRO) in metazoan proteins, but occurs separately from the CHORD domain in plants. This association is thought to be indicative of an functional interaction between CS and CHORD domains [].; PDB: 1WGV_A 2KMW_A 2O30_B 1WH0_A 1EJF_A 2RH0_B 1RL1_A 2CR0_A 1WFI_A 2XCM_D ....
Probab=98.18 E-value=7e-05 Score=49.72 Aligned_cols=74 Identities=19% Similarity=0.217 Sum_probs=60.8
Q ss_pred ceeeeCCeEEEEEEcCCC--CCCCeEEEEecCcEEEEEEEEecCCccceeecCceEEEEeeccceEEEEEECCcccccCC
Q 037002 51 TLALTPTSHVITLDIPRM--KKDDAKIAVEENRVLRVSGERKSDDYYKEEVEGDKWHRAERPFGKVWRQFRMPMSADLDH 128 (177)
Q Consensus 51 ~i~e~~~~y~i~~~lPG~--~~edI~V~~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~E~~~~~f~r~~~LP~~vd~~~ 128 (177)
.|..+++...|.+.+++. ++++|.|.+.+ +.|.|+..... +. .|...+.|...|+++.
T Consensus 4 ~W~Qt~~~V~v~i~~~~~~~~~~dv~v~~~~-~~l~v~~~~~~---------~~----------~~~~~~~L~~~I~~~~ 63 (79)
T PF04969_consen 4 DWYQTDDEVTVTIPVKPVDISKEDVKVDFTD-TSLSVSIKSGD---------GK----------EYLLEGELFGEIDPDE 63 (79)
T ss_dssp EEEEESSEEEEEEE-TTTTSSGGGEEEEEET-TEEEEEEEETT---------SC----------EEEEEEEBSS-BECCC
T ss_pred EEEECCCEEEEEEEEcCCCCChHHeEEEEEe-eEEEEEEEccC---------Cc----------eEEEEEEEeeeEcchh
Confidence 377899999999999666 49999999999 89999977433 11 3666778999999999
Q ss_pred eEEEEeCCEEEEEEec
Q 037002 129 VKAHLENGVLRITVPK 144 (177)
Q Consensus 129 i~A~~~~GvL~I~lPK 144 (177)
.++.+.++.|.|+|.|
T Consensus 64 s~~~~~~~~i~i~L~K 79 (79)
T PF04969_consen 64 STWKVKDNKIEITLKK 79 (79)
T ss_dssp EEEEEETTEEEEEEEB
T ss_pred cEEEEECCEEEEEEEC
Confidence 9999999999999987
No 28
>PF08190 PIH1: pre-RNA processing PIH1/Nop17
Probab=98.16 E-value=1e-05 Score=68.36 Aligned_cols=66 Identities=24% Similarity=0.466 Sum_probs=58.6
Q ss_pred eCCeEEEEEEcCCC-CCCCeEEEEecCcEEEEEEEEecCCccceeecCceEEEEeeccceEEEEEECCcccccCCeEEEE
Q 037002 55 TPTSHVITLDIPRM-KKDDAKIAVEENRVLRVSGERKSDDYYKEEVEGDKWHRAERPFGKVWRQFRMPMSADLDHVKAHL 133 (177)
Q Consensus 55 ~~~~y~i~~~lPG~-~~edI~V~~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~E~~~~~f~r~~~LP~~vd~~~i~A~~ 133 (177)
..+.++|++.|||+ +..+|.+.|.+ ..|.|...... |.-.++||..||.+..+|.|
T Consensus 259 ~p~~lvv~i~LP~~~s~~~i~LdV~~-~~l~l~~~~~~----------------------y~L~l~LP~~V~~~~~~Akf 315 (328)
T PF08190_consen 259 SPEELVVEIELPGVESASDIDLDVSE-DRLSLSSPKPK----------------------YRLDLPLPYPVDEDNGKAKF 315 (328)
T ss_pred CCceEEEEEECCCcCccceeEEEEeC-CEEEEEeCCCc----------------------eEEEccCCCcccCCCceEEE
Confidence 47899999999999 88999999999 88998877422 56678999999999999999
Q ss_pred --eCCEEEEEEe
Q 037002 134 --ENGVLRITVP 143 (177)
Q Consensus 134 --~~GvL~I~lP 143 (177)
+.++|+|+||
T Consensus 316 ~~~~~~L~vtlp 327 (328)
T PF08190_consen 316 DKKTKTLTVTLP 327 (328)
T ss_pred ccCCCEEEEEEE
Confidence 6799999998
No 29
>cd06489 p23_CS_hSgt1_like p23_like domain similar to the C-terminal CS (CHORD-SGT1) domain of human (h) Sgt1 and related proteins. hSgt1 is a co-chaperone which has been shown to be elevated in HEp-2 cells as a result of stress conditions such as heat shock. It interacts with the heat shock proteins (HSPs) Hsp70 and Hsp90, and it expression pattern is synchronized with these two Hsps. The interaction with HSP90 has been shown to involve the hSgt1_CS domain, and appears to be required for correct kinetochore assembly and efficient cell division. Some proteins in this subgroup contain a tetratricopeptide repeat (TPR) HSP-binding domain N-terminal to this CS domain, and most proteins in this subgroup contain a Sgt1-specific (SGS) domain C-terminal to the CS domain. The SGS domain interacts with some S100 family proteins. Studies suggest that S100A6 modulates in a Ca2+ dependent manner the interactions of hSgt1 with Hsp90 and Hsp70. The yeast Sgt1 CS domain is not found in this subgroup.
Probab=97.91 E-value=0.00014 Score=49.79 Aligned_cols=75 Identities=19% Similarity=0.194 Sum_probs=62.3
Q ss_pred eeeeCCeEEEEEEcCCCCCCCeEEEEecCcEEEEEEEEecCCccceeecCceEEEEeeccceEEEEEECCcccccCCeEE
Q 037002 52 LALTPTSHVITLDIPRMKKDDAKIAVEENRVLRVSGERKSDDYYKEEVEGDKWHRAERPFGKVWRQFRMPMSADLDHVKA 131 (177)
Q Consensus 52 i~e~~~~y~i~~~lPG~~~edI~V~~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~E~~~~~f~r~~~LP~~vd~~~i~A 131 (177)
|+.+++...|.+.++|+.++++.|++.+ +.|.+++.... +. .|.-.+.|...|++++.+.
T Consensus 2 W~Q~~~~V~iti~~k~~~~~~~~v~~~~-~~l~~~~~~~~---------~~----------~y~~~~~L~~~I~p~~s~~ 61 (84)
T cd06489 2 WYQTESQVVITILIKNVKPEDVSVEFEK-RELSATVKLPS---------GN----------DYSLKLHLLHPIVPEQSSY 61 (84)
T ss_pred ccccCCEEEEEEEECCCCHHHCEEEEeC-CEEEEEEECCC---------CC----------cEEEeeecCceecchhcEE
Confidence 5668899999999999999999999999 89999887422 11 2455668889999998888
Q ss_pred EEeCCEEEEEEeccC
Q 037002 132 HLENGVLRITVPKLV 146 (177)
Q Consensus 132 ~~~~GvL~I~lPK~~ 146 (177)
.+..+-+.|+|.|..
T Consensus 62 ~v~~~kiei~L~K~~ 76 (84)
T cd06489 62 KILSTKIEIKLKKTE 76 (84)
T ss_pred EEeCcEEEEEEEcCC
Confidence 888999999999975
No 30
>cd06467 p23_NUDC_like p23_like domain of NUD (nuclear distribution) C and similar proteins. Aspergillus nidulas (An) NUDC is needed for nuclear movement. AnNUDC is localized at the hyphal cortex, and binds NUDF at spindle pole bodies (SPBs) and in the cytoplasm at different stages in the cell cycle. At the SPBs it is part of the dynein molecular motor/NUDF complex that regulates microtubule dynamics. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its ext
Probab=97.81 E-value=0.00024 Score=48.37 Aligned_cols=73 Identities=22% Similarity=0.258 Sum_probs=59.1
Q ss_pred eeeeCCeEEEEEEcC-CCCCCCeEEEEecCcEEEEEEEEecCCccceeecCceEEEEeeccceEEEEEECCcccccCCeE
Q 037002 52 LALTPTSHVITLDIP-RMKKDDAKIAVEENRVLRVSGERKSDDYYKEEVEGDKWHRAERPFGKVWRQFRMPMSADLDHVK 130 (177)
Q Consensus 52 i~e~~~~y~i~~~lP-G~~~edI~V~~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~E~~~~~f~r~~~LP~~vd~~~i~ 130 (177)
|..+++...|.+.+| ++.+++|+|.+.+ +.|.|+..... +.-.-.|...|+++..+
T Consensus 3 W~Qt~~~V~i~i~~~~~~~~~dv~v~~~~-~~l~v~~~~~~----------------------~~l~~~L~~~I~~~~s~ 59 (85)
T cd06467 3 WTQTLDEVTVTIPLPEGTKSKDVKVEITP-KHLKVGVKGGE----------------------PLLDGELYAKVKVDEST 59 (85)
T ss_pred EEeeCCEEEEEEECCCCCcceeEEEEEEc-CEEEEEECCCC----------------------ceEcCcccCceeEcCCE
Confidence 566889999999997 7899999999999 89998865211 11122588899999988
Q ss_pred EEEeC-CEEEEEEeccCc
Q 037002 131 AHLEN-GVLRITVPKLVE 147 (177)
Q Consensus 131 A~~~~-GvL~I~lPK~~~ 147 (177)
..+.+ ..|.|+|+|...
T Consensus 60 w~~~~~~~v~i~L~K~~~ 77 (85)
T cd06467 60 WTLEDGKLLEITLEKRNE 77 (85)
T ss_pred EEEeCCCEEEEEEEECCC
Confidence 89999 999999999864
No 31
>cd06493 p23_NUDCD1_like p23_NUDCD1: p23-like NUD (nuclear distribution) C-like domain found in human NUD (nuclear distribution) C domain-containing protein 1, NUDCD1 (also known as CML66), and similar proteins. NUDCD1/CML66 is a broadly immunogenic tumor associated antigen, which is highly expressed in a variety of solid tumors and in leukemias. In normal tissues high expression of NUDCD1/CML66 is limited to testis and heart.
Probab=97.66 E-value=0.00075 Score=46.35 Aligned_cols=73 Identities=15% Similarity=0.197 Sum_probs=57.7
Q ss_pred eeeeCCeEEEEEEcC-CCCCCCeEEEEecCcEEEEEEEEecCCccceeecCceEEEEeeccceEEEEEECCcccccCCeE
Q 037002 52 LALTPTSHVITLDIP-RMKKDDAKIAVEENRVLRVSGERKSDDYYKEEVEGDKWHRAERPFGKVWRQFRMPMSADLDHVK 130 (177)
Q Consensus 52 i~e~~~~y~i~~~lP-G~~~edI~V~~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~E~~~~~f~r~~~LP~~vd~~~i~ 130 (177)
|..+.+...|.+.+| |+.++||+|.+.. +.|.|...... .+ ..-.|...|+++.-+
T Consensus 3 W~Qt~~~V~v~i~~p~~~~~~dv~v~~~~-~~l~v~~~~~~---------------------~~-~~g~L~~~I~~d~St 59 (85)
T cd06493 3 WQQTEEDLTLTIRLPEDTTKEDIRIKFLP-DHISIALKDQA---------------------PL-LEGKLYSSIDHESST 59 (85)
T ss_pred cEEeCCEEEEEEECCCCCChhhEEEEEec-CEEEEEeCCCC---------------------eE-EeCcccCcccccCcE
Confidence 566899999999996 9999999999999 78888753111 01 133688899999988
Q ss_pred EEEeCC-EEEEEEeccCc
Q 037002 131 AHLENG-VLRITVPKLVE 147 (177)
Q Consensus 131 A~~~~G-vL~I~lPK~~~ 147 (177)
-.+++| .|.|+|.|+..
T Consensus 60 w~i~~~~~l~i~L~K~~~ 77 (85)
T cd06493 60 WIIKENKSLEVSLIKKDE 77 (85)
T ss_pred EEEeCCCEEEEEEEECCC
Confidence 888777 79999999853
No 32
>cd06465 p23_hB-ind1_like p23_like domain found in human (h) butyrate-induced transcript 1 (B-ind1) and similar proteins. hB-ind1 participates in signaling by the small GTPase Rac1. It binds to Rac1 and enhances different Rac1 effects including activation of nuclear factor (NF) kappaB and activation of c-Jun N-terminal kinase (JNK). hB-ind1 also plays a part in the RNA replication and particle production of Hepatitis C virus (HCV) through its interaction with heat shock protein Hsp90, HCV nonstructural protein 5A (NS5A), and the immunophilin FKBP8. hB-ind1 is upregulated in the outer layer of Chinese hamster V79 cells grown as multicell spheroids, versus in the same cells grown as monolayers. This group includes the Saccharomyces cerevisiae Sba1, a co-chaperone of the Hsp90. Sba1 has been shown to be is required for telomere length maintenance, and may modulate telomerase DNA-binding activity.
Probab=97.65 E-value=0.00077 Score=48.31 Aligned_cols=74 Identities=18% Similarity=0.214 Sum_probs=62.1
Q ss_pred eeeeCCeEEEEEEcCCCCCCCeEEEEecCcEEEEEEEEecCCccceeecCceEEEEeeccceEEEEEECCcccccCCeEE
Q 037002 52 LALTPTSHVITLDIPRMKKDDAKIAVEENRVLRVSGERKSDDYYKEEVEGDKWHRAERPFGKVWRQFRMPMSADLDHVKA 131 (177)
Q Consensus 52 i~e~~~~y~i~~~lPG~~~edI~V~~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~E~~~~~f~r~~~LP~~vd~~~i~A 131 (177)
|+.+.+...|.+.+||+ +++.|.+.. +.|.|++.... ++. .|...+.|...|+++..+.
T Consensus 5 W~Qt~~~V~i~i~~~~~--~~~~V~~~~-~~l~v~~~~~~--------~~~----------~y~~~~~L~~~I~pe~s~~ 63 (108)
T cd06465 5 WAQRSDVVYLTIELPDA--KDPKIKLEP-TSLSFKAKGGG--------GGK----------KYEFDLEFYKEIDPEESKY 63 (108)
T ss_pred eeECCCEEEEEEEeCCC--CCcEEEEEC-CEEEEEEEcCC--------CCe----------eEEEEeEhhhhccccccEE
Confidence 66799999999999998 899999999 89999986321 111 2555678999999999999
Q ss_pred EEeCCEEEEEEeccC
Q 037002 132 HLENGVLRITVPKLV 146 (177)
Q Consensus 132 ~~~~GvL~I~lPK~~ 146 (177)
.+.++.|.|+|.|..
T Consensus 64 ~v~~~kveI~L~K~~ 78 (108)
T cd06465 64 KVTGRQIEFVLRKKE 78 (108)
T ss_pred EecCCeEEEEEEECC
Confidence 999999999999986
No 33
>cd06468 p23_CacyBP p23_like domain found in proteins similar to Calcyclin-Binding Protein(CacyBP)/Siah-1-interacting protein (SIP). CacyBP/SIP interacts with S100A6 (calcyclin), with some other members of the S100 family, with tubulin, and with Siah-1 and Skp-1. The latter two are components of the ubiquitin ligase that regulates beta-catenin degradation. The beta-catenin gene is an oncogene participating in tumorigenesis in many different cancers. Overexpression of CacyBP/SIP, in part through its effect on the expression of beta-catenin, inhibits the proliferation, tumorigenicity, and invasion of gastric cancer cells. CacyBP/SIP is abundant in neurons and neuroblastoma NB2a cells. An extensive re-organization of microtubules accompanies the differentiation of NB2a cells. CacyBP/SIP may contribute to NB2a cell differentiation through binding to and increasing the oligomerization of tubulin. CacyBP/SIP is also implicated in differentiation of erythroid cells, rat neonatal cardiomyocytes
Probab=97.46 E-value=0.0023 Score=44.25 Aligned_cols=76 Identities=13% Similarity=0.180 Sum_probs=61.0
Q ss_pred eeeeCCeEEEEEEcCCCCC---CCeEEEEecCcEEEEEEEEecCCccceeecCceEEEEeeccceEEEEE-ECCcccccC
Q 037002 52 LALTPTSHVITLDIPRMKK---DDAKIAVEENRVLRVSGERKSDDYYKEEVEGDKWHRAERPFGKVWRQF-RMPMSADLD 127 (177)
Q Consensus 52 i~e~~~~y~i~~~lPG~~~---edI~V~~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~E~~~~~f~r~~-~LP~~vd~~ 127 (177)
|..+++...|.+.+|+..+ ++++|.+.. +.|.|++.... +.. |.-.+ +|-..|+++
T Consensus 6 W~Qt~~~V~i~i~~~~~~~~~~~~v~v~~~~-~~l~v~~~~~~---------~~~----------~~~~~~~L~~~I~~e 65 (92)
T cd06468 6 WDQSDKFVKIYITLKGVHQLPKENIQVEFTE-RSFELKVHDLN---------GKN----------YRFTINRLLKKIDPE 65 (92)
T ss_pred eecCCCEEEEEEEccCCCcCCcccEEEEecC-CEEEEEEECCC---------CcE----------EEEEehHhhCccCcc
Confidence 6668999999999999987 999999999 89999885311 111 33334 488899999
Q ss_pred CeEEEEeCCEEEEEEeccCc
Q 037002 128 HVKAHLENGVLRITVPKLVE 147 (177)
Q Consensus 128 ~i~A~~~~GvL~I~lPK~~~ 147 (177)
..+..+..+-+.|+|.|...
T Consensus 66 ~s~~~~~~~ki~i~L~K~~~ 85 (92)
T cd06468 66 KSSFKVKTDRIVITLAKKKE 85 (92)
T ss_pred ccEEEEeCCEEEEEEEeCCC
Confidence 99999999999999999863
No 34
>cd06488 p23_melusin_like p23_like domain similar to the C-terminal (tail) domain of vertebrate Melusin and related proteins. Melusin's tail domain interacts with the cytoplasmic domain of beta1-A and beta1-D isoforms of beta1 integrin, it does not bind other integrin beta subunits. Melusin is a muscle-specific protein expressed in skeletal and cardiac muscles but not in smooth muscle or other tissues. It is needed for heart hypertrophy following mechanical overload. The integrin-binding portion of this domain appears to be sequestered in the full length melusin protein, Ca2+ may modulate the protein's conformation exposing this binding site. This group includes Chordc1, also known as Chp-1, which is conserved from vertebrates to humans. Mammalian Chordc1 interacts with the heat shock protein (HSP) Hsp90 and is implicated in circadian and/or homeostatic mechanisms in the brain. The N-terminal portions of proteins belonging to this group contain two cysteine and histidine rich domain (C
Probab=97.44 E-value=0.0026 Score=43.91 Aligned_cols=77 Identities=9% Similarity=0.052 Sum_probs=63.4
Q ss_pred ceeeeCCeEEEEEEcCCCCCCCeEEEEecCcEEEEEEEEecCCccceeecCceEEEEeeccceEEEEEECCcccccCCeE
Q 037002 51 TLALTPTSHVITLDIPRMKKDDAKIAVEENRVLRVSGERKSDDYYKEEVEGDKWHRAERPFGKVWRQFRMPMSADLDHVK 130 (177)
Q Consensus 51 ~i~e~~~~y~i~~~lPG~~~edI~V~~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~E~~~~~f~r~~~LP~~vd~~~i~ 130 (177)
+|+.+++...|.+.+.|+.++++.|.+.+ +.|.|+..... +. .|...+.|-..|+++..+
T Consensus 4 dW~Qs~~~V~ItI~~k~~~~~~~~v~~~~-~~l~v~~~~~~---------~~----------~y~~~l~L~~~I~~~~s~ 63 (87)
T cd06488 4 DWHQTGSHVVVSVYAKNSNPELSVVEANS-TVLTIHIVFEG---------NK----------EFQLDIELWGVIDVEKSS 63 (87)
T ss_pred cEeeCCCEEEEEEEECcCCccceEEEecC-CEEEEEEECCC---------Cc----------eEEEEeeccceEChhHcE
Confidence 47779999999999999999999999998 78888765321 11 256667888999999988
Q ss_pred EEEeCCEEEEEEeccCc
Q 037002 131 AHLENGVLRITVPKLVE 147 (177)
Q Consensus 131 A~~~~GvL~I~lPK~~~ 147 (177)
......-+.|+|.|..+
T Consensus 64 ~~v~~~kvei~L~K~~~ 80 (87)
T cd06488 64 VNMLPTKVEIKLRKAEP 80 (87)
T ss_pred EEecCcEEEEEEEeCCC
Confidence 88899999999999863
No 35
>cd06494 p23_NUDCD2_like p23-like NUD (nuclear distribution) C-like found in human NUDC domain-containing protein 2 (NUDCD2) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=96.75 E-value=0.017 Score=40.57 Aligned_cols=71 Identities=20% Similarity=0.207 Sum_probs=56.7
Q ss_pred eeeeCCeEEEEEEcC-CCCCCCeEEEEecCcEEEEEEEEecCCccceeecCceEEEEeeccceEEEEEECCcccccCCeE
Q 037002 52 LALTPTSHVITLDIP-RMKKDDAKIAVEENRVLRVSGERKSDDYYKEEVEGDKWHRAERPFGKVWRQFRMPMSADLDHVK 130 (177)
Q Consensus 52 i~e~~~~y~i~~~lP-G~~~edI~V~~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~E~~~~~f~r~~~LP~~vd~~~i~ 130 (177)
|.-+.+...|.+.+| |++.+||.|.+.. +.|.|...... +. .| .|...|+++.-.
T Consensus 10 W~QT~~eV~v~i~lp~~~~~kdv~V~i~~-~~l~V~~~g~~------------~l-----~G------~L~~~I~~dest 65 (93)
T cd06494 10 WYQTMDEVFIEVNVPPGTRAKDVKCKLGS-RDISLAVKGQE------------VL-----KG------KLFDSVVADECT 65 (93)
T ss_pred EEeEcCEEEEEEECCCCCceeeEEEEEEc-CEEEEEECCEE------------EE-----cC------cccCccCcccCE
Confidence 666999999999888 8999999999999 88888753110 10 11 577889999989
Q ss_pred EEEeCCE-EEEEEeccC
Q 037002 131 AHLENGV-LRITVPKLV 146 (177)
Q Consensus 131 A~~~~Gv-L~I~lPK~~ 146 (177)
-++++|- |.|.|.|..
T Consensus 66 Wtled~k~l~I~L~K~~ 82 (93)
T cd06494 66 WTLEDRKLIRIVLTKSN 82 (93)
T ss_pred EEEECCcEEEEEEEeCC
Confidence 9998875 899999975
No 36
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=96.01 E-value=0.047 Score=47.09 Aligned_cols=79 Identities=18% Similarity=0.144 Sum_probs=64.8
Q ss_pred ccceeeeCCeEEEEEEcCCCCCCCeEEEEecCcEEEEEEEEecCCccceeecCceEEEEeeccceEEEEEECCcccccCC
Q 037002 49 HQTLALTPTSHVITLDIPRMKKDDAKIAVEENRVLRVSGERKSDDYYKEEVEGDKWHRAERPFGKVWRQFRMPMSADLDH 128 (177)
Q Consensus 49 ~~~i~e~~~~y~i~~~lPG~~~edI~V~~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~E~~~~~f~r~~~LP~~vd~~~ 128 (177)
..+|+.+++...|.+-+.|+.++++.|.+.+ +.|.|+..... +. .|...+.|-..|+++.
T Consensus 158 r~dWyQs~~~V~i~i~~k~~~~~~~~v~~~~-~~l~v~~~~~~---------~~----------~y~~~~~L~~~I~p~~ 217 (356)
T PLN03088 158 RHEFYQKPEEVVVTVFAKGVPAENVNVDFGE-QILSVVIEVPG---------ED----------AYHLQPRLFGKIIPDK 217 (356)
T ss_pred ccceeecCCEEEEEEEecCCChHHcEEEeec-CEEEEEEecCC---------Cc----------ceeecccccccccccc
Confidence 3468889999999999999999999999999 88998875422 11 2444578888999999
Q ss_pred eEEEEeCCEEEEEEeccCc
Q 037002 129 VKAHLENGVLRITVPKLVE 147 (177)
Q Consensus 129 i~A~~~~GvL~I~lPK~~~ 147 (177)
.+..+.---+.|+|.|...
T Consensus 218 s~~~v~~~Kiei~l~K~~~ 236 (356)
T PLN03088 218 CKYEVLSTKIEIRLAKAEP 236 (356)
T ss_pred cEEEEecceEEEEEecCCC
Confidence 8888888899999999863
No 37
>cd06492 p23_mNUDC_like p23-like NUD (nuclear distribution) C-like domain of mammalian(m) NUDC and similar proteins. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its extracellular domain, and promoting cell proliferation and differentiation.
Probab=95.95 E-value=0.11 Score=35.90 Aligned_cols=72 Identities=14% Similarity=0.226 Sum_probs=54.4
Q ss_pred eeeeCCeEEEEEEcC---CCCCCCeEEEEecCcEEEEEEEEecCCccceeecCceEEEEeeccceEEEEEECCcccccCC
Q 037002 52 LALTPTSHVITLDIP---RMKKDDAKIAVEENRVLRVSGERKSDDYYKEEVEGDKWHRAERPFGKVWRQFRMPMSADLDH 128 (177)
Q Consensus 52 i~e~~~~y~i~~~lP---G~~~edI~V~~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~E~~~~~f~r~~~LP~~vd~~~ 128 (177)
+.-+.++..|.+.+| |++..+|+|.+.. ..|.|..+... .. + .=.|...|+++.
T Consensus 3 W~QT~~ev~v~v~l~~~~~~~~kdv~v~i~~-~~l~v~~~g~~------------~~--------i--~G~L~~~V~~de 59 (87)
T cd06492 3 WTQTLSEVELKVPFKVSFRLKGKDVVVDIQR-KHLKVGLKGQP------------PI--------I--DGELYNEVKVEE 59 (87)
T ss_pred cEeecCEEEEEEECCCCCCccceEEEEEEec-CEEEEEECCCc------------eE--------E--eCcccCcccccc
Confidence 344778888999986 3889999999999 78888653211 11 1 115778899999
Q ss_pred eEEEEeCC-EEEEEEeccC
Q 037002 129 VKAHLENG-VLRITVPKLV 146 (177)
Q Consensus 129 i~A~~~~G-vL~I~lPK~~ 146 (177)
-.-.+++| .|.|+|-|..
T Consensus 60 s~Wtled~~~l~i~L~K~~ 78 (87)
T cd06492 60 SSWLIEDGKVVTVNLEKIN 78 (87)
T ss_pred cEEEEeCCCEEEEEEEECC
Confidence 88889886 8999999974
No 38
>cd00237 p23 p23 binds heat shock protein (Hsp)90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis.
Probab=95.76 E-value=0.25 Score=35.50 Aligned_cols=75 Identities=15% Similarity=0.104 Sum_probs=56.2
Q ss_pred ceeeeCCeEEEEEEcCCCCCCCeEEEEecCcEEEEEEEEecCCccceeecCceEEEEeeccceEEEEEECCcccccCCeE
Q 037002 51 TLALTPTSHVITLDIPRMKKDDAKIAVEENRVLRVSGERKSDDYYKEEVEGDKWHRAERPFGKVWRQFRMPMSADLDHVK 130 (177)
Q Consensus 51 ~i~e~~~~y~i~~~lPG~~~edI~V~~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~E~~~~~f~r~~~LP~~vd~~~i~ 130 (177)
.++.+.+...|++.+|+ .++++|.+++ +.|.++|... ++.. |.-.+.|=..|+++.-+
T Consensus 5 ~WaQr~~~V~ltI~v~d--~~d~~v~l~~-~~l~f~~~~~---------~g~~----------y~~~l~l~~~I~pe~Sk 62 (106)
T cd00237 5 LWYDRRDYVFIEFCVED--SKDVKVDFEK-SKLTFSCLNG---------DNVK----------IYNEIELYDRVDPNDSK 62 (106)
T ss_pred eeeECCCEEEEEEEeCC--CCCcEEEEec-CEEEEEEECC---------CCcE----------EEEEEEeecccCcccCe
Confidence 36778889999999998 6899999999 8999998421 1222 23355666788988767
Q ss_pred EEEeCCEEEEEEeccCc
Q 037002 131 AHLENGVLRITVPKLVE 147 (177)
Q Consensus 131 A~~~~GvL~I~lPK~~~ 147 (177)
-....--+.|.|.|+..
T Consensus 63 ~~v~~r~ve~~L~K~~~ 79 (106)
T cd00237 63 HKRTDRSILCCLRKGKE 79 (106)
T ss_pred EEeCCceEEEEEEeCCC
Confidence 66666678888999753
No 39
>KOG1309 consensus Suppressor of G2 allele of skp1 [Signal transduction mechanisms]
Probab=95.10 E-value=0.087 Score=41.41 Aligned_cols=76 Identities=21% Similarity=0.180 Sum_probs=59.5
Q ss_pred ceeeeCCeEEEEEEcCCCCCCCeEEEEecCcEEEEEEEEecCCccceeecCceEEEEeeccceEEEEEECCcccccCCeE
Q 037002 51 TLALTPTSHVITLDIPRMKKDDAKIAVEENRVLRVSGERKSDDYYKEEVEGDKWHRAERPFGKVWRQFRMPMSADLDHVK 130 (177)
Q Consensus 51 ~i~e~~~~y~i~~~lPG~~~edI~V~~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~E~~~~~f~r~~~LP~~vd~~~i~ 130 (177)
+|+.+....+|++-.+|+.++|+.|.+.+ +.|.|...... +. .|.-...|-..|.+++.+
T Consensus 7 DwyQt~~~vvIti~~k~v~~~~v~v~~s~-~~l~~~~~~~~---------g~----------~~~l~~~L~~~I~pe~~s 66 (196)
T KOG1309|consen 7 DWYQTETSVVITIFAKNVPKEDVNVEISE-NTLSIVIQLPS---------GS----------EYNLQLKLYHEIIPEKSS 66 (196)
T ss_pred eeecCCceEEEEEEecCCCccceeEEeec-ceEEEEEecCC---------ch----------hhhhhHHhccccccccee
Confidence 47779999999999999999999999999 89988876532 11 133333466778888877
Q ss_pred EEEeCCEEEEEEeccC
Q 037002 131 AHLENGVLRITVPKLV 146 (177)
Q Consensus 131 A~~~~GvL~I~lPK~~ 146 (177)
-..----+.|+|+|..
T Consensus 67 ~k~~stKVEI~L~K~~ 82 (196)
T KOG1309|consen 67 FKVFSTKVEITLAKAE 82 (196)
T ss_pred eEeeeeeEEEEecccc
Confidence 7777788899999954
No 40
>cd06490 p23_NCB5OR p23_like domain found in NAD(P)H cytochrome b5 (NCB5) oxidoreductase (OR) and similar proteins. NCB5OR is widely expressed in human organs and tissues and is localized in the ER (endoplasmic reticulum). It appears to play a critical role in maintaining viable pancreatic beta cells. Mice homozygous for a targeted knockout (KO) of the gene encoding NCB5OR develop an early-onset nonautoimmune diabetes phenotype with a non-inflammatory beta-cell deficiency. The role of NCB5OR in beta cells may be in maintaining or regulating their redox status. Proteins in this group in addition contain an N-terminal cytochrome b5 domain and a C-terminal cytochrome b5 oxidoreductase domain. The gene encoding NCB5OR has been considered as a positional candidate for type II diabetes and other diabetes subtypes related to B-cell dysfunction, however variation in its coding region does not appear not to be a major contributor to the pathogenesis of these diseases.
Probab=94.52 E-value=0.97 Score=31.03 Aligned_cols=75 Identities=13% Similarity=0.097 Sum_probs=53.3
Q ss_pred ceeeeCCeEEEEEEcCCC--CCCCeEEEEecCcEEEEEEEEecCCccceeecCceEEEEeeccceEEEEEECCcccccCC
Q 037002 51 TLALTPTSHVITLDIPRM--KKDDAKIAVEENRVLRVSGERKSDDYYKEEVEGDKWHRAERPFGKVWRQFRMPMSADLDH 128 (177)
Q Consensus 51 ~i~e~~~~y~i~~~lPG~--~~edI~V~~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~E~~~~~f~r~~~LP~~vd~~~ 128 (177)
+|+-+++...|.+-..+. ...++.+.... +.|.|+..... . .|...+.|=..|+.+.
T Consensus 2 DWyQt~~~Vtitiy~K~~~~~~~~v~v~~~~-~~l~v~~~~~~-----------~---------~~~~~~~L~~~I~~~~ 60 (87)
T cd06490 2 DWFQTDSEVTIVVYTKSKGNPADIVIVDDQQ-RELRVEIILGD-----------K---------SYLLHLDLSNEVQWPC 60 (87)
T ss_pred CceECCCEEEEEEEEcccCCCCccEEEECCC-CEEEEEEECCC-----------c---------eEEEeeeccccCCCCc
Confidence 467799999999998864 55555566666 67888754211 0 2566678888888775
Q ss_pred eEEEEe--CCEEEEEEeccCc
Q 037002 129 VKAHLE--NGVLRITVPKLVE 147 (177)
Q Consensus 129 i~A~~~--~GvL~I~lPK~~~ 147 (177)
+..+. -|-+.|+|.|..+
T Consensus 61 -~~~~~~~~~KVEI~L~K~e~ 80 (87)
T cd06490 61 -EVRISTETGKIELVLKKKEP 80 (87)
T ss_pred -EEEEcccCceEEEEEEcCCC
Confidence 55554 8899999999764
No 41
>cd06495 p23_NUDCD3_like p23-like NUD (nuclear distribution) C-like domain found in human NUDC domain-containing protein 3 (NUDCD3) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=94.46 E-value=0.68 Score=33.05 Aligned_cols=75 Identities=13% Similarity=0.163 Sum_probs=55.7
Q ss_pred eeeeCCeEEEEEEcC-CC-CCCCeEEEEecCcEEEEEEEEecCCccceeecCceEEEEeeccceEEEEEECCcccccCCe
Q 037002 52 LALTPTSHVITLDIP-RM-KKDDAKIAVEENRVLRVSGERKSDDYYKEEVEGDKWHRAERPFGKVWRQFRMPMSADLDHV 129 (177)
Q Consensus 52 i~e~~~~y~i~~~lP-G~-~~edI~V~~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~E~~~~~f~r~~~LP~~vd~~~i 129 (177)
|.-|-+...|.+.+| |. +.++|.|.+.. ..|.|.-.... ....+. .- .|+..|+.+.-
T Consensus 9 WtQTl~eV~V~i~lp~~~~~~kdv~v~i~~-~~l~v~~~~~~--------~~~~~i---------~G--~L~~~V~~des 68 (102)
T cd06495 9 WSQDYTDVEVRVPVPKDVVKGRQVSVDLQS-SSIRVSVRDGG--------GEKVLM---------EG--EFTHKINTENS 68 (102)
T ss_pred EEeECCeEEEEEECCCCCccceEEEEEEEc-CEEEEEEecCC--------CCceEE---------eC--cccCcccCccc
Confidence 455899999999999 54 67899999999 88888765211 000111 11 47788999998
Q ss_pred EEEEeCC-EEEEEEeccC
Q 037002 130 KAHLENG-VLRITVPKLV 146 (177)
Q Consensus 130 ~A~~~~G-vL~I~lPK~~ 146 (177)
.-.+++| .|.|+|-|..
T Consensus 69 ~Wtled~~~l~I~L~K~~ 86 (102)
T cd06495 69 LWSLEPGKCVLLSLSKCS 86 (102)
T ss_pred eEEEeCCCEEEEEEEECC
Confidence 9999986 5899999974
No 42
>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB3 is expressed in adult skeletal muscle, smooth muscle, and heart, and in several other fetal tissues. In muscle cells HspB3 forms an oligomeric 150 kDa complex with myotonic dystrophy protein kinase-binding protein (MKBP/ HspB2), this complex may comprise one of two independent muscle-cell specific chaperone systems. The expression of HspB3 is induced during muscle differentiation controlled by the myogenic factor MyoD. HspB3 may also interact with Hsp22 (HspB8).
Probab=79.66 E-value=4.1 Score=27.84 Aligned_cols=30 Identities=17% Similarity=0.320 Sum_probs=27.0
Q ss_pred eEEEEEEcC-CCCCCCeEEEE-ecCcEEEEEEE
Q 037002 58 SHVITLDIP-RMKKDDAKIAV-EENRVLRVSGE 88 (177)
Q Consensus 58 ~y~i~~~lP-G~~~edI~V~~-~~~~~L~I~g~ 88 (177)
.|.=++.|| +++.+.|+=.+ .+ |+|+|.|+
T Consensus 51 ~F~R~~~LP~~Vd~~~v~A~~~~d-GvL~I~~~ 82 (83)
T cd06477 51 SFTRQYQLPDGVEHKDLSAMLCHD-GILVVETK 82 (83)
T ss_pred EEEEEEECCCCcchheEEEEEcCC-CEEEEEec
Confidence 788899999 99999999998 56 99999985
No 43
>PF13349 DUF4097: Domain of unknown function (DUF4097)
Probab=78.84 E-value=20 Score=26.55 Aligned_cols=76 Identities=14% Similarity=0.190 Sum_probs=47.0
Q ss_pred CCeEEEEEEcCCCCCCCeEEEEecCcEEEEEEEEecCCccceeecCceEEEEeeccceEEEEEECCcccccCCeEEEEeC
Q 037002 56 PTSHVITLDIPRMKKDDAKIAVEENRVLRVSGERKSDDYYKEEVEGDKWHRAERPFGKVWRQFRMPMSADLDHVKAHLEN 135 (177)
Q Consensus 56 ~~~y~i~~~lPG~~~edI~V~~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~E~~~~~f~r~~~LP~~vd~~~i~A~~~~ 135 (177)
.+...+++.. ..+.+++..++ +.|.|+.+... ..-...+..... ...-.-.+.||.....++|.....+
T Consensus 73 ~~~~~i~v~~---~~k~~~~~~~~-~~L~I~~~~~~------~~~~~~~~~~~~-~~~~~i~I~lP~~~~l~~i~i~~~~ 141 (166)
T PF13349_consen 73 SDDDKIKVEY---NGKKPEISVEG-GTLTIKSKDRE------SFFFKGFNFNNS-DNKSKITIYLPKDYKLDKIDIKTSS 141 (166)
T ss_pred cCCccEEEEE---cCcEEEEEEcC-CEEEEEEeccc------ccccceEEEccc-CCCcEEEEEECCCCceeEEEEEecc
Confidence 3334445555 22268888888 89999887222 001112222111 2345678889998888888888888
Q ss_pred CEEEEEE
Q 037002 136 GVLRITV 142 (177)
Q Consensus 136 GvL~I~l 142 (177)
|-++|.=
T Consensus 142 G~i~i~~ 148 (166)
T PF13349_consen 142 GDITIED 148 (166)
T ss_pred ccEEEEc
Confidence 9888754
No 44
>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18.5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic me
Probab=78.54 E-value=3.2 Score=28.35 Aligned_cols=33 Identities=18% Similarity=0.265 Sum_probs=28.1
Q ss_pred eCCeEEEEEEcCCCCCCCeEEEEecCcEEEEEEE
Q 037002 55 TPTSHVITLDIPRMKKDDAKIAVEENRVLRVSGE 88 (177)
Q Consensus 55 ~~~~y~i~~~lPG~~~edI~V~~~~~~~L~I~g~ 88 (177)
.-+.|.-.+.||.+.++.|+-.+.+ |+|+|+..
T Consensus 60 ~~g~f~r~~~lp~v~~~~i~A~~~d-GvL~I~lP 92 (93)
T cd06471 60 YYGSFSRSFYLPNVDEEEIKAKYEN-GVLKITLP 92 (93)
T ss_pred eccEEEEEEECCCCCHHHCEEEEEC-CEEEEEEc
Confidence 3456777889999999999999999 99999864
No 45
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.
Probab=77.55 E-value=5.2 Score=27.58 Aligned_cols=34 Identities=15% Similarity=0.284 Sum_probs=29.6
Q ss_pred eEEEEEECCcccccCCeEEEEeCCEEEEEEeccCc
Q 037002 113 KVWRQFRMPMSADLDHVKAHLENGVLRITVPKLVE 147 (177)
Q Consensus 113 ~f~r~~~LP~~vd~~~i~A~~~~GvL~I~lPK~~~ 147 (177)
.|.-..-|| +++.+.|+-.+.+|.|+|..-+...
T Consensus 9 ~~~v~adlP-G~~kedI~V~v~~~~L~I~ger~~~ 42 (87)
T cd06482 9 NVLASVDVC-GFEPDQVKVKVKDGKVQVSAERENR 42 (87)
T ss_pred EEEEEEECC-CCCHHHeEEEEECCEEEEEEEEecc
Confidence 467788899 8999999999999999999987653
No 46
>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]
Probab=75.64 E-value=2.1 Score=36.08 Aligned_cols=106 Identities=12% Similarity=0.074 Sum_probs=72.6
Q ss_pred ceeeeCCeEEEEEEcCCCCCCCeEEEEecCcEEEEEEEEecCCccceeecCceEEEEeeccceEEEEEECCcccccCCeE
Q 037002 51 TLALTPTSHVITLDIPRMKKDDAKIAVEENRVLRVSGERKSDDYYKEEVEGDKWHRAERPFGKVWRQFRMPMSADLDHVK 130 (177)
Q Consensus 51 ~i~e~~~~y~i~~~lPG~~~edI~V~~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~E~~~~~f~r~~~LP~~vd~~~i~ 130 (177)
++.+|.....|-+.-|-++.++|++-++. |+|.|+-+... .+- -|...++|-..|+++..+
T Consensus 180 d~s~Ts~t~~ifiy~~pv~deqVs~~~e~-NTL~I~~q~~~---------~~~---------~~~~~~~Ly~ev~P~~~s 240 (368)
T COG5091 180 DFSETSDTAIIFIYRPPVGDEQVSPVLEG-NTLSISYQPRR---------LRL---------WNDITISLYKEVYPDIRS 240 (368)
T ss_pred eccccceeEEEEEecCCCCccccceeecC-Ccceeeeeccc---------cch---------HHHhhhhhhhhcCcchhh
Confidence 35557777888888888999999999999 89999977543 111 245567788889999877
Q ss_pred EEEeCCEEEEEEeccCccc------CCCCeEEEEecCCCCCCccchhhhhc
Q 037002 131 AHLENGVLRITVPKLVEEK------KRQPKVINIDEEPGNSSDEDVKAAKA 175 (177)
Q Consensus 131 A~~~~GvL~I~lPK~~~~~------~~~~~~I~I~~~~~~~~~~~~~~~~~ 175 (177)
-.+---++.|+|-|....+ .+......+..++.++..++.+++++
T Consensus 241 ~k~fsK~~e~~l~KV~~v~W~~l~~~pa~~S~~l~~e~~N~~SAt~~s~~k 291 (368)
T COG5091 241 IKSFSKRVEVHLRKVEMVRWGGLNGRPADESSRLSDEGKNSDSATPKSSKK 291 (368)
T ss_pred hhhcchhheehhhhhhhhhhcccccCccccccccccccccccccCCccccc
Confidence 7776688888888875431 12223445555555555555554443
No 47
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins. IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6
Probab=73.43 E-value=13 Score=25.39 Aligned_cols=35 Identities=23% Similarity=0.215 Sum_probs=30.2
Q ss_pred eEEEEEECCcccccCCeEEEEeCCEEEEEEeccCcc
Q 037002 113 KVWRQFRMPMSADLDHVKAHLENGVLRITVPKLVEE 148 (177)
Q Consensus 113 ~f~r~~~LP~~vd~~~i~A~~~~GvL~I~lPK~~~~ 148 (177)
.|.-.+.|| ++..+.|+-.++++.|+|+..+....
T Consensus 12 ~~~v~~~lP-G~~kedi~v~~~~~~L~I~g~~~~~~ 46 (90)
T cd06470 12 NYRITLAVA-GFSEDDLEIEVENNQLTVTGKKADEE 46 (90)
T ss_pred eEEEEEECC-CCCHHHeEEEEECCEEEEEEEEcccc
Confidence 577789999 79999999999999999998876543
No 48
>PRK10743 heat shock protein IbpA; Provisional
Probab=73.36 E-value=14 Score=27.61 Aligned_cols=32 Identities=3% Similarity=-0.014 Sum_probs=26.2
Q ss_pred EEEEEECCcccccCCeEEEEeCCEEEEEEeccC
Q 037002 114 VWRQFRMPMSADLDHVKAHLENGVLRITVPKLV 146 (177)
Q Consensus 114 f~r~~~LP~~vd~~~i~A~~~~GvL~I~lPK~~ 146 (177)
|.-...|| +++.+.|.-.+++|+|+|..-+..
T Consensus 47 ~~v~aelP-Gv~kedi~V~v~~~~LtI~ge~~~ 78 (137)
T PRK10743 47 YRIAIAVA-GFAESELEITAQDNLLVVKGAHAD 78 (137)
T ss_pred EEEEEECC-CCCHHHeEEEEECCEEEEEEEECc
Confidence 44555688 899999999999999999987654
No 49
>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative st
Probab=72.64 E-value=5.8 Score=27.10 Aligned_cols=33 Identities=24% Similarity=0.348 Sum_probs=28.9
Q ss_pred eCCeEEEEEEcC-CCCCCCeEEEEecCcEEEEEEE
Q 037002 55 TPTSHVITLDIP-RMKKDDAKIAVEENRVLRVSGE 88 (177)
Q Consensus 55 ~~~~y~i~~~lP-G~~~edI~V~~~~~~~L~I~g~ 88 (177)
....|.-.+.|| +++++.|+-.+.+ |+|.|+..
T Consensus 58 ~~g~f~r~i~LP~~v~~~~i~A~~~n-GvL~I~lP 91 (92)
T cd06472 58 SSGRFVRRFRLPENADADEVKAFLEN-GVLTVTVP 91 (92)
T ss_pred eccEEEEEEECCCCCCHHHCEEEEEC-CEEEEEec
Confidence 457899999999 6899999999999 99999854
No 50
>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB2 is preferentially and constitutively expressed in skeletal muscle and heart. HspB2 shows homooligomeric activity and forms aggregates in muscle cytosol. Although its expression is not induced by heat shock, it redistributes to the insoluble fraction in response to heat shock. In the mouse heart, HspB2 plays a role in maintaining energetic balance, by protecting cardiac energetics during ischemia/reperfusion, and allowing for increased work during acute inotropic challenge. hHspB2 [previously also known as myotonic dystrophy protein kinase (DMPK) binding protein (MKBP)] is selectively up-regulated in skeletal muscles from myotonic dystrophy patients.
Probab=72.59 E-value=6.7 Score=26.67 Aligned_cols=32 Identities=9% Similarity=0.074 Sum_probs=28.1
Q ss_pred eEEEEEECCcccccCCeEEEEeCCEEEEEEecc
Q 037002 113 KVWRQFRMPMSADLDHVKAHLENGVLRITVPKL 145 (177)
Q Consensus 113 ~f~r~~~LP~~vd~~~i~A~~~~GvL~I~lPK~ 145 (177)
.|.-.+.|| ++.++.|+..+.+|.|+|..-+.
T Consensus 8 ~y~v~~dlp-G~~~edi~V~v~~~~L~I~g~~~ 39 (83)
T cd06476 8 KYQVFLDVC-HFTPDEITVRTVDNLLEVSARHP 39 (83)
T ss_pred eEEEEEEcC-CCCHHHeEEEEECCEEEEEEEEc
Confidence 477788998 79999999999999999998764
No 51
>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 on the other hand is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. HspB5's functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its ol
Probab=71.37 E-value=9.8 Score=25.69 Aligned_cols=32 Identities=3% Similarity=0.020 Sum_probs=28.3
Q ss_pred eEEEEEECCcccccCCeEEEEeCCEEEEEEecc
Q 037002 113 KVWRQFRMPMSADLDHVKAHLENGVLRITVPKL 145 (177)
Q Consensus 113 ~f~r~~~LP~~vd~~~i~A~~~~GvL~I~lPK~ 145 (177)
.|.-.+.|| +++++.|+-.+.+|.|+|+.-+.
T Consensus 8 ~~~v~~dlp-G~~~edI~V~v~~~~L~I~g~~~ 39 (83)
T cd06478 8 RFSVNLDVK-HFSPEELSVKVLGDFVEIHGKHE 39 (83)
T ss_pred eEEEEEECC-CCCHHHeEEEEECCEEEEEEEEc
Confidence 477888999 89999999999999999998653
No 52
>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 does not belong to this group. Mutations inHspB4 have been associated with Autosomal Dominant Congenital Cataract (ADCC). The chaperone-like functions of HspB4 are considered important for maintaining lens transparency and preventing cataract.
Probab=71.36 E-value=9.7 Score=25.97 Aligned_cols=32 Identities=6% Similarity=0.008 Sum_probs=28.2
Q ss_pred eEEEEEECCcccccCCeEEEEeCCEEEEEEecc
Q 037002 113 KVWRQFRMPMSADLDHVKAHLENGVLRITVPKL 145 (177)
Q Consensus 113 ~f~r~~~LP~~vd~~~i~A~~~~GvL~I~lPK~ 145 (177)
.|.-.+.|| +++++.|+-.+.+|.|+|+.-+.
T Consensus 11 ~~~v~~dlp-G~~~edi~V~v~~~~L~I~g~~~ 42 (86)
T cd06497 11 KFTIYLDVK-HFSPEDLTVKVLDDYVEIHGKHS 42 (86)
T ss_pred EEEEEEECC-CCCHHHeEEEEECCEEEEEEEEc
Confidence 477788998 89999999999999999998653
No 53
>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=71.02 E-value=8.3 Score=25.28 Aligned_cols=33 Identities=21% Similarity=0.314 Sum_probs=29.2
Q ss_pred eCCeEEEEEEcC-CCCCCCeEEEEecCcEEEEEEE
Q 037002 55 TPTSHVITLDIP-RMKKDDAKIAVEENRVLRVSGE 88 (177)
Q Consensus 55 ~~~~y~i~~~lP-G~~~edI~V~~~~~~~L~I~g~ 88 (177)
....|.-.+.|| +++.+.++..+.+ |.|.|...
T Consensus 54 ~~~~f~r~~~LP~~vd~~~i~a~~~~-G~L~I~~p 87 (88)
T cd06464 54 SYGSFSRSFRLPEDVDPDKIKASLEN-GVLTITLP 87 (88)
T ss_pred eCcEEEEEEECCCCcCHHHcEEEEeC-CEEEEEEc
Confidence 478899999999 6788999999999 99999864
No 54
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=69.82 E-value=9.8 Score=25.44 Aligned_cols=34 Identities=9% Similarity=0.068 Sum_probs=30.1
Q ss_pred eEEEEEECCcccccCCeEEEEeCCEEEEEEeccCc
Q 037002 113 KVWRQFRMPMSADLDHVKAHLENGVLRITVPKLVE 147 (177)
Q Consensus 113 ~f~r~~~LP~~vd~~~i~A~~~~GvL~I~lPK~~~ 147 (177)
.|.-.+.|| ++.++.|+-.++++.|+|+.-+...
T Consensus 8 ~~~v~~dlp-G~~~edI~v~v~~~~L~I~g~~~~~ 41 (83)
T cd06526 8 KFQVTLDVK-GFKPEELKVKVSDNKLVVEGKHEER 41 (83)
T ss_pred eEEEEEECC-CCCHHHcEEEEECCEEEEEEEEeee
Confidence 588889999 6999999999999999999987653
No 55
>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB7 is a 25-kDa protein, preferentially expressed in heart and skeletal muscle. It binds the cytoskeleton protein alpha-filamin (also known as actin-binding protein 280). The expression of HspB7 is increased during rat muscle aging. Its expression is also modulated in obesity implicating this protein in this and related metabolic disorders. As the human gene encoding HspB7 is mapped to chromosome 1p36.23-p34.3 it is a positional candidate for several dystrophies and myopathies.
Probab=69.39 E-value=11 Score=25.49 Aligned_cols=32 Identities=9% Similarity=0.100 Sum_probs=28.2
Q ss_pred eEEEEEECCcccccCCeEEEEeCCEEEEEEecc
Q 037002 113 KVWRQFRMPMSADLDHVKAHLENGVLRITVPKL 145 (177)
Q Consensus 113 ~f~r~~~LP~~vd~~~i~A~~~~GvL~I~lPK~ 145 (177)
.|.-.+.|| +++++.|+-.+++|.|+|..-|.
T Consensus 9 ~~~v~~dlp-G~~pedi~V~v~~~~L~I~ger~ 40 (81)
T cd06479 9 TYQFAVDVS-DFSPEDIIVTTSNNQIEVHAEKL 40 (81)
T ss_pred eEEEEEECC-CCCHHHeEEEEECCEEEEEEEEe
Confidence 477788999 89999999999999999998764
No 56
>PRK11597 heat shock chaperone IbpB; Provisional
Probab=67.46 E-value=20 Score=26.98 Aligned_cols=32 Identities=9% Similarity=0.057 Sum_probs=26.3
Q ss_pred EEEEEECCcccccCCeEEEEeCCEEEEEEeccC
Q 037002 114 VWRQFRMPMSADLDHVKAHLENGVLRITVPKLV 146 (177)
Q Consensus 114 f~r~~~LP~~vd~~~i~A~~~~GvL~I~lPK~~ 146 (177)
|.-...|| +++.+.|.-.+++|.|+|+.-+..
T Consensus 45 y~v~adlP-Gv~kedi~V~v~~~~LtI~ge~~~ 76 (142)
T PRK11597 45 YRITLALA-GFRQEDLDIQLEGTRLTVKGTPEQ 76 (142)
T ss_pred EEEEEEeC-CCCHHHeEEEEECCEEEEEEEEcc
Confidence 55566788 899999999999999999987653
No 57
>cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21.6 KDa small heat shock protein (sHsp) HspB8, also denoted as Hsp22 in humans, and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. A chaperone complex formed of HspB8 and Bag3 stimulates degradation of protein complexes by macroautophagy. HspB8 also forms complexes with Hsp27 (HspB1), MKBP (HspB2), HspB3, alphaB-crystallin (HspB5), Hsp20 (HspB6), and cvHsp (HspB7). These latter interactions may depend on phosphorylation of the respective partner sHsp. HspB8 may participate in the regulation of cell proliferation, cardiac hypertrophy, apoptosis, and carcinogenesis. Point mutations in HspB8 have been correlated with the development of several congenital neurological diseases, including Charcot Marie tooth disease and distal motor neuropathy type II.
Probab=65.81 E-value=14 Score=25.71 Aligned_cols=32 Identities=6% Similarity=0.181 Sum_probs=27.5
Q ss_pred CeEEEEEEcC-CCCCCCeEEEEecCcEEEEEEE
Q 037002 57 TSHVITLDIP-RMKKDDAKIAVEENRVLRVSGE 88 (177)
Q Consensus 57 ~~y~i~~~lP-G~~~edI~V~~~~~~~L~I~g~ 88 (177)
..|.=.+.|| +++.+.|+=.+..+|+|+|.+.
T Consensus 58 r~F~R~~~LP~~Vd~~~v~s~l~~dGvL~IeaP 90 (91)
T cd06480 58 KNFTKKIQLPPEVDPVTVFASLSPEGLLIIEAP 90 (91)
T ss_pred EEEEEEEECCCCCCchhEEEEeCCCCeEEEEcC
Confidence 5677889998 8999999999985499999874
No 58
>PF14913 DPCD: DPCD protein family
Probab=65.61 E-value=45 Score=26.58 Aligned_cols=69 Identities=25% Similarity=0.355 Sum_probs=51.8
Q ss_pred eCCeEEEEEE-cCCCCCCCeEEEEecC-cEEEEEEEEecCCccceeecCceEEEEeeccceEEEEEECCc------cccc
Q 037002 55 TPTSHVITLD-IPRMKKDDAKIAVEEN-RVLRVSGERKSDDYYKEEVEGDKWHRAERPFGKVWRQFRMPM------SADL 126 (177)
Q Consensus 55 ~~~~y~i~~~-lPG~~~edI~V~~~~~-~~L~I~g~~~~~~~~~~~~~~~~~~~~E~~~~~f~r~~~LP~------~vd~ 126 (177)
|...|+-++- || +.++--+|.++++ +.++|+-..+. |.++|.+|+ ..+.
T Consensus 94 Tk~~fqWRIRNLP-YP~dvYsVtvd~~~r~ivvRTtNKK----------------------YyKk~~IPDl~R~~l~l~~ 150 (194)
T PF14913_consen 94 TKTSFQWRIRNLP-YPKDVYSVTVDEDERCIVVRTTNKK----------------------YYKKFSIPDLDRCGLPLEQ 150 (194)
T ss_pred CccceEEEEccCC-CCccceEEEEcCCCcEEEEECcCcc----------------------ceeEecCCcHHhhCCCcch
Confidence 7777777764 44 6788888888763 45777755443 677888986 2477
Q ss_pred CCeEEEEeCCEEEEEEeccC
Q 037002 127 DHVKAHLENGVLRITVPKLV 146 (177)
Q Consensus 127 ~~i~A~~~~GvL~I~lPK~~ 146 (177)
+.++....+..|.|+..|-.
T Consensus 151 ~~ls~~h~nNTLIIsYkKP~ 170 (194)
T PF14913_consen 151 SALSFAHQNNTLIISYKKPK 170 (194)
T ss_pred hhceeeeecCeEEEEecCcH
Confidence 88999999999999998864
No 59
>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. HspB4 does not belong to this group. HspB5 shows increased synthesis in response to stress. HspB5 is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. Its functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its oligomerization and anti-apoptotic activ
Probab=64.18 E-value=13 Score=25.17 Aligned_cols=31 Identities=10% Similarity=0.100 Sum_probs=27.6
Q ss_pred eEEEEEECCcccccCCeEEEEeCCEEEEEEec
Q 037002 113 KVWRQFRMPMSADLDHVKAHLENGVLRITVPK 144 (177)
Q Consensus 113 ~f~r~~~LP~~vd~~~i~A~~~~GvL~I~lPK 144 (177)
.|.-.+.|| +++++.|+-.+.++.|+|..-+
T Consensus 8 ~~~v~~dlp-G~~~edi~V~v~~~~L~I~g~~ 38 (84)
T cd06498 8 KFSVNLDVK-HFSPEELKVKVLGDFIEIHGKH 38 (84)
T ss_pred eEEEEEECC-CCCHHHeEEEEECCEEEEEEEE
Confidence 477888998 8999999999999999999854
No 60
>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Hsp27 shows enhanced synthesis in response to stress. It is a molecular chaperone which interacts with a large number of different proteins. It is found in many types of human cells including breast, uterus, cervix, platelets and cancer cells. Hsp27 has diverse cellular functions including, chaperoning, regulation of actin polymerization, keratinocyte differentiation, regulation of inflammatory pathways in keratinocytes, and protection from oxidative stress through modulating glutathione levels. It is also a subunit of AUF1-containing protein complexes. It has been linked to several transduction pathways regulating cellular functions including differentiat
Probab=63.59 E-value=15 Score=25.04 Aligned_cols=32 Identities=13% Similarity=0.114 Sum_probs=28.5
Q ss_pred eEEEEEECCcccccCCeEEEEeCCEEEEEEecc
Q 037002 113 KVWRQFRMPMSADLDHVKAHLENGVLRITVPKL 145 (177)
Q Consensus 113 ~f~r~~~LP~~vd~~~i~A~~~~GvL~I~lPK~ 145 (177)
.|.-.+.|| +++++.|+-.+.++.|+|+.-+.
T Consensus 11 ~~~v~~dlP-G~~~edi~V~v~~~~L~I~g~~~ 42 (86)
T cd06475 11 RWKVSLDVN-HFAPEELVVKTKDGVVEITGKHE 42 (86)
T ss_pred eEEEEEECC-CCCHHHEEEEEECCEEEEEEEEC
Confidence 477888998 89999999999999999998764
No 61
>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB9 is expressed exclusively in the normal testis and in various tumor samples and is a cancer/testis antigen. hHspB9 interacts with TCTEL1 (T-complex testis expressed protein -1), a subunit of dynein. hHspB9 and TCTEL1 are co-expressed in similar cells within the testis and in tumor cells. Included in this group is Xenopus Hsp30, a developmentally-regulated heat-inducible molecular chaperone.
Probab=63.14 E-value=26 Score=23.89 Aligned_cols=33 Identities=6% Similarity=0.038 Sum_probs=28.8
Q ss_pred eEEEEEECCcccccCCeEEEEeCCEEEEEEeccC
Q 037002 113 KVWRQFRMPMSADLDHVKAHLENGVLRITVPKLV 146 (177)
Q Consensus 113 ~f~r~~~LP~~vd~~~i~A~~~~GvL~I~lPK~~ 146 (177)
.|.-.+.|| ++.++.|+-.++++.|+|+.-+..
T Consensus 8 ~~~v~~dlp-G~~~edI~V~v~~~~L~I~g~~~~ 40 (87)
T cd06481 8 GFSLKLDVR-GFSPEDLSVRVDGRKLVVTGKREK 40 (87)
T ss_pred eEEEEEECC-CCChHHeEEEEECCEEEEEEEEee
Confidence 477788998 799999999999999999987654
No 62
>KOG1667 consensus Zn2+-binding protein Melusin/RAR1, contains CHORD domain [General function prediction only]
Probab=62.87 E-value=53 Score=27.53 Aligned_cols=79 Identities=10% Similarity=-0.001 Sum_probs=64.6
Q ss_pred ceeeeCCeEEEEEEcCCCCCCCeEEEEecCcEEEEEEEEecCCccceeecCceEEEEeeccceEEEEEECCcccccCCeE
Q 037002 51 TLALTPTSHVITLDIPRMKKDDAKIAVEENRVLRVSGERKSDDYYKEEVEGDKWHRAERPFGKVWRQFRMPMSADLDHVK 130 (177)
Q Consensus 51 ~i~e~~~~y~i~~~lPG~~~edI~V~~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~E~~~~~f~r~~~LP~~vd~~~i~ 130 (177)
+|.-+++..+|.+..-|.-++.-.|.... ..|.|+-.... + ..+|...+.|=.-|+++.-+
T Consensus 218 Dwhqt~~~Vti~VY~k~~lpe~s~iean~-~~l~V~ivf~~--------g----------na~fd~d~kLwgvvnve~s~ 278 (320)
T KOG1667|consen 218 DWHQTNGFVTINVYAKGALPETSNIEANG-TTLHVSIVFGF--------G----------NASFDLDYKLWGVVNVEESS 278 (320)
T ss_pred hhhhcCCeEEEEEEeccCCcccceeeeCC-eEEEEEEEecC--------C----------Cceeeccceeeeeechhhce
Confidence 45559999999999999999999999998 88888876532 1 11477777887788999999
Q ss_pred EEEeCCEEEEEEeccCcc
Q 037002 131 AHLENGVLRITVPKLVEE 148 (177)
Q Consensus 131 A~~~~GvL~I~lPK~~~~ 148 (177)
+.+-.--+.|+|+|+.+.
T Consensus 279 v~m~~tkVEIsl~k~ep~ 296 (320)
T KOG1667|consen 279 VVMGETKVEISLKKAEPG 296 (320)
T ss_pred EEeecceEEEEEeccCCC
Confidence 999888999999998753
No 63
>PRK05518 rpl6p 50S ribosomal protein L6P; Reviewed
Probab=61.82 E-value=43 Score=26.30 Aligned_cols=45 Identities=24% Similarity=0.439 Sum_probs=31.2
Q ss_pred CCCeEEEEecCcEEEEEEEEecCCccceeecCceEEEEeeccceEEEEEECCcccccCCeEEEEeCCEEEEEEe
Q 037002 70 KDDAKIAVEENRVLRVSGERKSDDYYKEEVEGDKWHRAERPFGKVWRQFRMPMSADLDHVKAHLENGVLRITVP 143 (177)
Q Consensus 70 ~edI~V~~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~E~~~~~f~r~~~LP~~vd~~~i~A~~~~GvL~I~lP 143 (177)
|++|+|++.+ +.++|+|.+-. ..+.|+-| .++..+++|-|.|...
T Consensus 13 P~~V~v~i~~-~~v~VkGp~G~----------------------L~~~~~~~------~v~i~~~~~~i~v~~~ 57 (180)
T PRK05518 13 PEGVTVEIEG-LVVTVKGPKGE----------------------LTRDFWYP------GVTISVEDGKVVIETE 57 (180)
T ss_pred CCCCEEEEEC-CEEEEECCCeE----------------------EEEEecCC------cEEEEEECCEEEEEEC
Confidence 6889999999 89999998543 44444321 3455678887777755
No 64
>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry.; InterPro: IPR002068 Prokaryotic and eukaryotic organisms respond to heat shock or other environmental stress by inducing the synthesis of proteins collectively known as heat-shock proteins (hsp) []. Amongst them is a family of proteins with an average molecular weight of 20 Kd, known as the hsp20 proteins []. These seem to act as chaperones that can protect other proteins against heat-induced denaturation and aggregation. Hsp20 proteins seem to form large heterooligomeric aggregates. Structurally, this family is characterised by the presence of a conserved C-terminal domain of about 100 residues.; PDB: 2BOL_B 3N3E_B 2H50_P 2H53_F 2BYU_L 1GME_D 3VQM_J 3VQK_E 3VQL_A 3AAC_A ....
Probab=60.87 E-value=25 Score=24.04 Aligned_cols=32 Identities=16% Similarity=0.284 Sum_probs=27.3
Q ss_pred eEEEEEECCcccccCCeEEEEeCCEEEEEEecc
Q 037002 113 KVWRQFRMPMSADLDHVKAHLENGVLRITVPKL 145 (177)
Q Consensus 113 ~f~r~~~LP~~vd~~~i~A~~~~GvL~I~lPK~ 145 (177)
.|.-.+.|| +++.+.|+-.+.++.|.|+.-+.
T Consensus 8 ~~~i~~~lp-G~~~edi~I~~~~~~L~I~g~~~ 39 (102)
T PF00011_consen 8 EYIIKVDLP-GFDKEDIKIKVDDNKLVISGKRK 39 (102)
T ss_dssp EEEEEEE-T-TS-GGGEEEEEETTEEEEEEEEE
T ss_pred EEEEEEECC-CCChHHEEEEEecCccceeceee
Confidence 577889999 89999999999999999998887
No 65
>TIGR03653 arch_L6P archaeal ribosomal protein L6P. Members of this protein family are the archaeal ribosomal protein L6P. The top-scoring proteins not selected by this model are eukaryotic cytosolic ribosomal protein L9. Bacterial ribosomal protein L6 scores lower and is described by a distinct model.
Probab=59.69 E-value=54 Score=25.46 Aligned_cols=45 Identities=18% Similarity=0.350 Sum_probs=31.1
Q ss_pred CCCeEEEEecCcEEEEEEEEecCCccceeecCceEEEEeeccceEEEEEECCcccccCCeEEEEeCCEEEEEEe
Q 037002 70 KDDAKIAVEENRVLRVSGERKSDDYYKEEVEGDKWHRAERPFGKVWRQFRMPMSADLDHVKAHLENGVLRITVP 143 (177)
Q Consensus 70 ~edI~V~~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~E~~~~~f~r~~~LP~~vd~~~i~A~~~~GvL~I~lP 143 (177)
|++|+|++.+ +.++|+|.+-. ..+.|. |. .|...++++.|.|..+
T Consensus 7 P~~V~v~i~~-~~i~vkGp~G~----------------------L~~~~~-~~-----~v~i~~~~~~i~v~~~ 51 (170)
T TIGR03653 7 PEGVSVTIEG-NIVTVKGPKGE----------------------VTRELW-YP-----GIEISVEDGKVVIETD 51 (170)
T ss_pred CCCCEEEEeC-CEEEEECCCeE----------------------EEEEEe-CC-----cEEEEEeCCEEEEEeC
Confidence 5889999999 89999998533 444432 22 3445568888877754
No 66
>KOG2265 consensus Nuclear distribution protein NUDC [Signal transduction mechanisms]
Probab=57.26 E-value=39 Score=26.54 Aligned_cols=72 Identities=15% Similarity=0.212 Sum_probs=50.2
Q ss_pred eeeeCCeEEEEEEcC-CC-CCCCeEEEEecCcEEEEEEEEecCCccceeecCceEEEEeeccceEEEEEECCcccccCCe
Q 037002 52 LALTPTSHVITLDIP-RM-KKDDAKIAVEENRVLRVSGERKSDDYYKEEVEGDKWHRAERPFGKVWRQFRMPMSADLDHV 129 (177)
Q Consensus 52 i~e~~~~y~i~~~lP-G~-~~edI~V~~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~E~~~~~f~r~~~LP~~vd~~~i 129 (177)
|.-|=....|.+.+| |+ +..+|.+.+.. ..|.|.-+.... +. .=.|...|+++..
T Consensus 23 W~QtL~EV~i~i~vp~~~~ksk~v~~~Iq~-~hI~V~~kg~~~-----------il-----------dG~L~~~vk~des 79 (179)
T KOG2265|consen 23 WDQTLEEVEIQIPVPPGTAKSKDVHCSIQS-KHIKVGLKGQPP-----------IL-----------DGELSHSVKVDES 79 (179)
T ss_pred eeeehhheEEEeecCCCCcccceEEEEeee-eEEEEecCCCCc-----------ee-----------cCccccccccccc
Confidence 444555566665554 77 88899999999 788877654321 11 1147778999999
Q ss_pred EEEEeCCEEEEEEeccC
Q 037002 130 KAHLENGVLRITVPKLV 146 (177)
Q Consensus 130 ~A~~~~GvL~I~lPK~~ 146 (177)
..++++|.+.|++-++.
T Consensus 80 ~WtiEd~k~i~i~l~K~ 96 (179)
T KOG2265|consen 80 TWTIEDGKMIVILLKKS 96 (179)
T ss_pred eEEecCCEEEEEEeecc
Confidence 99999998877776654
No 67
>PF08308 PEGA: PEGA domain; InterPro: IPR013229 This domain is found in both archaea and bacteria and has similarity to S-layer (surface layer) proteins. It is named after the characteristic PEGA sequence motif found in this domain. The secondary structure of this domain is predicted to be beta-strands.
Probab=56.22 E-value=31 Score=22.04 Aligned_cols=37 Identities=19% Similarity=0.323 Sum_probs=30.2
Q ss_pred eeCCeEEEEEEcCCCCCCCeEEEEecCcEEEEEEEEe
Q 037002 54 LTPTSHVITLDIPRMKKDDAKIAVEENRVLRVSGERK 90 (177)
Q Consensus 54 e~~~~y~i~~~lPG~~~edI~V~~~~~~~L~I~g~~~ 90 (177)
...+.|.|++..+|+..-.-.|.+..+....|+..-+
T Consensus 32 l~~G~~~v~v~~~Gy~~~~~~v~v~~~~~~~v~~~L~ 68 (71)
T PF08308_consen 32 LPPGEHTVTVEKPGYEPYTKTVTVKPGETTTVNVTLE 68 (71)
T ss_pred cCCccEEEEEEECCCeeEEEEEEECCCCEEEEEEEEE
Confidence 3688999999999999998888887646777776643
No 68
>TIGR03654 L6_bact ribosomal protein L6, bacterial type.
Probab=56.13 E-value=56 Score=25.37 Aligned_cols=20 Identities=15% Similarity=0.429 Sum_probs=17.1
Q ss_pred CCCeEEEEecCcEEEEEEEEe
Q 037002 70 KDDAKIAVEENRVLRVSGERK 90 (177)
Q Consensus 70 ~edI~V~~~~~~~L~I~g~~~ 90 (177)
|++|+|.+.+ +.|+|+|.+-
T Consensus 11 P~~V~v~~~~-~~v~v~Gp~G 30 (175)
T TIGR03654 11 PAGVEVTIDG-NVVTVKGPKG 30 (175)
T ss_pred CCCcEEEEeC-CEEEEEcCCe
Confidence 5889999998 8999999853
No 69
>KOG3158 consensus HSP90 co-chaperone p23 [Posttranslational modification, protein turnover, chaperones]
Probab=55.75 E-value=66 Score=25.30 Aligned_cols=73 Identities=12% Similarity=0.074 Sum_probs=52.1
Q ss_pred eeeeCCeEEEEEEcCCCCCCCeEEEEecCcEEEEEEEEecCCccceeecCceEEEEeeccceEEEEEECCcccccCCeEE
Q 037002 52 LALTPTSHVITLDIPRMKKDDAKIAVEENRVLRVSGERKSDDYYKEEVEGDKWHRAERPFGKVWRQFRMPMSADLDHVKA 131 (177)
Q Consensus 52 i~e~~~~y~i~~~lPG~~~edI~V~~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~E~~~~~f~r~~~LP~~vd~~~i~A 131 (177)
|....+-..+++.|+ ...++.|.++. ..|+++|+... +.. .+...|.|=..||+++.+-
T Consensus 12 Waqr~~~vyltv~Ve--d~~d~~v~~e~-~~l~fs~k~~~--------d~~----------~~~~~ief~~eIdpe~sk~ 70 (180)
T KOG3158|consen 12 WAQRRDLVYLTVCVE--DAKDVHVNLEP-SKLTFSCKSGA--------DNH----------KYENEIEFFDEIDPEKSKH 70 (180)
T ss_pred hhhhcCeEEEEEEec--cCccceeeccc-cEEEEEeccCC--------Cce----------eeEEeeehhhhcCHhhccc
Confidence 666788888999987 56788889999 79999998543 111 2555677778899988775
Q ss_pred EEeCCEEEEEEeccC
Q 037002 132 HLENGVLRITVPKLV 146 (177)
Q Consensus 132 ~~~~GvL~I~lPK~~ 146 (177)
+.. +-+..+++++.
T Consensus 71 k~~-~r~if~i~~K~ 84 (180)
T KOG3158|consen 71 KRT-SRSIFCILRKK 84 (180)
T ss_pred ccc-ceEEEEEEEcc
Confidence 554 55555555544
No 70
>PF04972 BON: BON domain; InterPro: IPR007055 The BON domain is typically ~60 residues long and has an alpha/beta predicted fold. There is a conserved glycine residue and several hydrophobic regions. This pattern of conservation is more suggestive of a binding or structural function rather than a catalytic function. Most proteobacteria seem to possess one or two BON-containing proteins, typically of the OsmY-type proteins; outside of this group the distribution is more disparate. The OsmY protein is an Escherichia coli 20 kDa outer membrane or periplasmic protein that is expressed in response to a variety of stress conditions, in particular, helping to provide protection against osmotic shock. One hypothesis is that OsmY prevents shrinkage of the cytoplasmic compartment by contacting the phospholipid interfaces surrounding the periplasmic space. The domain architecture of two BON domains alone suggests that these domains contact the surfaces of phospholipids, with each domain contacting a membrane [].; PDB: 2L26_A 2KGS_A 2KSM_A.
Probab=54.72 E-value=24 Score=21.96 Aligned_cols=25 Identities=32% Similarity=0.542 Sum_probs=20.2
Q ss_pred CCCCCCCeEEEEecCcEEEEEEEEec
Q 037002 66 PRMKKDDAKIAVEENRVLRVSGERKS 91 (177)
Q Consensus 66 PG~~~edI~V~~~~~~~L~I~g~~~~ 91 (177)
++++..+|.|.+.+ +.+.++|.-..
T Consensus 12 ~~~~~~~i~v~v~~-g~v~L~G~v~s 36 (64)
T PF04972_consen 12 PWLPDSNISVSVEN-GVVTLSGEVPS 36 (64)
T ss_dssp -CTT-TTEEEEEEC-TEEEEEEEESS
T ss_pred cccCCCeEEEEEEC-CEEEEEeeCcH
Confidence 36777799999999 99999999755
No 71
>PTZ00027 60S ribosomal protein L6; Provisional
Probab=52.36 E-value=62 Score=25.61 Aligned_cols=47 Identities=15% Similarity=0.271 Sum_probs=31.7
Q ss_pred CCCeEEEEecCcEEEEEEEEecCCccceeecCceEEEEeeccceEEEEEECCcccccCCeEEEEeCCEEEEEEe
Q 037002 70 KDDAKIAVEENRVLRVSGERKSDDYYKEEVEGDKWHRAERPFGKVWRQFRMPMSADLDHVKAHLENGVLRITVP 143 (177)
Q Consensus 70 ~edI~V~~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~E~~~~~f~r~~~LP~~vd~~~i~A~~~~GvL~I~lP 143 (177)
|++|+|++.+ +.|+|+|.+-. ..+.| |... ..|....++|.|.|..+
T Consensus 13 P~~V~V~i~~-~~v~VkGp~G~----------------------L~~~~--~~~~--~~i~i~~~~~~i~v~~~ 59 (190)
T PTZ00027 13 PEGVTVTVKS-RKVTVTGKYGE----------------------LTRSF--RHLP--VDIKLSKDGKYIKVEMW 59 (190)
T ss_pred CCCCEEEEEC-CEEEEECCCce----------------------EEEEe--cCCC--ceEEEEeCCCEEEEEeC
Confidence 6899999999 89999998533 44433 3210 24555678887777755
No 72
>PF01954 DUF104: Protein of unknown function DUF104; InterPro: IPR008203 This family includes short archaebacterial proteins of unknown function. Archaeoglobus fulgidus has twelve copies of this protein, with several being clustered together in the genome.; PDB: 2NWT_A.
Probab=51.42 E-value=15 Score=23.65 Aligned_cols=17 Identities=41% Similarity=0.567 Sum_probs=12.1
Q ss_pred CCeEEEEeCCEEEEEEe
Q 037002 127 DHVKAHLENGVLRITVP 143 (177)
Q Consensus 127 ~~i~A~~~~GvL~I~lP 143 (177)
..|.|.|+||+|.-.=|
T Consensus 3 ~~I~aiYe~GvlkPl~~ 19 (60)
T PF01954_consen 3 KVIEAIYENGVLKPLEP 19 (60)
T ss_dssp --EEEEEETTEEEECS-
T ss_pred ceEEEEEECCEEEECCC
Confidence 45899999999986433
No 73
>PRK05498 rplF 50S ribosomal protein L6; Validated
Probab=49.14 E-value=68 Score=24.96 Aligned_cols=21 Identities=14% Similarity=0.384 Sum_probs=17.7
Q ss_pred CCCeEEEEecCcEEEEEEEEec
Q 037002 70 KDDAKIAVEENRVLRVSGERKS 91 (177)
Q Consensus 70 ~edI~V~~~~~~~L~I~g~~~~ 91 (177)
|++|+|.+.+ +.|+|+|.+-.
T Consensus 12 P~~V~v~~~~-~~v~vkGp~G~ 32 (178)
T PRK05498 12 PAGVEVTING-NVVTVKGPKGE 32 (178)
T ss_pred CCCCEEEEEC-CEEEEECCCEE
Confidence 5899999999 89999998543
No 74
>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1. The human gene encoding this protein is a positional candidate gene for developmental dyslexia (DD), it is located on 15q21.3 by the DYX1 DD susceptibility locus (15q15-21). Independent association studies have reported conflicting results. However, association of short-term memory, which plays a role in DD, with a variant within the DYX1C1 gene has been reported. Most proteins belonging to this group contain a C-terminal tetratricopeptide repeat (TPR) protein binding region.
Probab=48.68 E-value=53 Score=21.09 Aligned_cols=36 Identities=14% Similarity=0.184 Sum_probs=30.3
Q ss_pred eCCeEEEEEEcCCC-CCCCeEEEEecCcEEEEEEEEec
Q 037002 55 TPTSHVITLDIPRM-KKDDAKIAVEENRVLRVSGERKS 91 (177)
Q Consensus 55 ~~~~y~i~~~lPG~-~~edI~V~~~~~~~L~I~g~~~~ 91 (177)
+.+.|.+.++||+- .+++.+..+.+ +.|.|+-.+..
T Consensus 34 ~~~~~~~~~~l~~~I~~e~~~~~~~~-~~l~i~L~K~~ 70 (78)
T cd06469 34 NFPPYLFELDLAAPIDDEKSSAKIGN-GVLVFTLVKKE 70 (78)
T ss_pred cCCCEEEEEeCcccccccccEEEEeC-CEEEEEEEeCC
Confidence 44679999999875 99999999999 89999977644
No 75
>PF00347 Ribosomal_L6: Ribosomal protein L6; InterPro: IPR020040 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. L6 is a protein from the large (50S) subunit. In Escherichia coli, it is located in the aminoacyl-tRNA binding site of the peptidyltransferase centre, and is known to bind directly to 23S rRNA. It belongs to a family of ribosomal proteins, including L6 from bacteria, cyanelles (structures that perform similar functions to chloroplasts, but have structural and biochemical characteristics of Cyanobacteria) and mitochondria; and L9 from mammals, Drosophila, plants and yeast. L6 contains two domains with almost identical folds, suggesting that is was derived by the duplication of an ancient RNA-binding protein gene. Analysis reveals several sites on the protein surface where interactions with other ribosome components may occur, the N terminus being involved in protein-protein interactions and the C terminus containing possible RNA-binding sites []. This entry represents the alpha-beta domain found duplicated in ribosomal L6 proteins. This domain consists of two beta-sheets and one alpha-helix packed around single core [].; GO: 0003735 structural constituent of ribosome, 0019843 rRNA binding, 0006412 translation, 0005840 ribosome; PDB: 2HGJ_H 2HGQ_H 2HGU_H 1S1I_H 3O5H_I 3O58_I 3J16_F 3IZS_F 2V47_H 2WDJ_H ....
Probab=48.54 E-value=40 Score=21.84 Aligned_cols=20 Identities=15% Similarity=0.499 Sum_probs=16.8
Q ss_pred CCCeEEEEecCcEEEEEEEEe
Q 037002 70 KDDAKIAVEENRVLRVSGERK 90 (177)
Q Consensus 70 ~edI~V~~~~~~~L~I~g~~~ 90 (177)
|+.|+|.+.+ +.+.+.|.+.
T Consensus 2 P~gV~v~~~~-~~i~v~G~~g 21 (77)
T PF00347_consen 2 PEGVKVTIKG-NIITVKGPKG 21 (77)
T ss_dssp STTCEEEEET-TEEEEESSSS
T ss_pred CCcEEEEEeC-cEEEEECCCE
Confidence 5788999999 8999998853
No 76
>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=46.57 E-value=62 Score=24.01 Aligned_cols=32 Identities=16% Similarity=0.219 Sum_probs=27.0
Q ss_pred EEEEEECCcccccCCeEEEEeCCEEEEEEeccC
Q 037002 114 VWRQFRMPMSADLDHVKAHLENGVLRITVPKLV 146 (177)
Q Consensus 114 f~r~~~LP~~vd~~~i~A~~~~GvL~I~lPK~~ 146 (177)
|.-.+.|| +++.+.|+-.+.++.|+|+.-+..
T Consensus 52 ~~I~~elP-G~~kedI~I~~~~~~l~I~g~~~~ 83 (146)
T COG0071 52 YRITAELP-GVDKEDIEITVEGNTLTIRGEREE 83 (146)
T ss_pred EEEEEEcC-CCChHHeEEEEECCEEEEEEEecc
Confidence 45566788 799999999999999999998875
No 77
>CHL00140 rpl6 ribosomal protein L6; Validated
Probab=46.25 E-value=71 Score=24.89 Aligned_cols=21 Identities=14% Similarity=0.678 Sum_probs=17.1
Q ss_pred CCCeEEEEecCcEEEEEEEEec
Q 037002 70 KDDAKIAVEENRVLRVSGERKS 91 (177)
Q Consensus 70 ~edI~V~~~~~~~L~I~g~~~~ 91 (177)
|+.|+|.+.+ +.|+|+|.+-.
T Consensus 12 P~~V~v~i~~-~~v~vkGp~G~ 32 (178)
T CHL00140 12 PDNVNVSIDD-QIIKVKGPKGT 32 (178)
T ss_pred CCCCEEEEEC-CEEEEECCCEE
Confidence 5788999998 89999988543
No 78
>TIGR02934 nifT_nitrog probable nitrogen fixation protein FixT. This largely uncharacterized protein family is assigned a role in nitrogen fixation by two criteria. First, its gene occurs, generally, among genes essential for expression of active nitrogenase. Second, its phylogenetic profile closely matches that of nitrogen-fixing bacteria. However, mutational studies in Klebsiella pneumoniae failed to demonstrate any phenotype for deletion or overexpression of the protein.
Probab=41.57 E-value=29 Score=22.93 Aligned_cols=24 Identities=29% Similarity=0.437 Sum_probs=16.9
Q ss_pred eCCEEEEEEeccCcccCCCCeEEEEecC
Q 037002 134 ENGVLRITVPKLVEEKKRQPKVINIDEE 161 (177)
Q Consensus 134 ~~GvL~I~lPK~~~~~~~~~~~I~I~~~ 161 (177)
.+|.|++.+||+.-+ ..++.++.+
T Consensus 9 ~~g~l~~YvpKKDLE----E~Vv~~e~~ 32 (67)
T TIGR02934 9 RAGELSAYVPKKDLE----EVIVSVEKE 32 (67)
T ss_pred CCCCEEEEEECCcch----hheeeeecC
Confidence 457799999998765 346666533
No 79
>cd01759 PLAT_PL PLAT/LH2 domain of pancreatic triglyceride lipase. Lipases hydrolyze phospholipids and triglycerides to generate fatty acids for energy production or for storage and to release inositol phosphates that act as second messengers. The central role of triglyceride lipases is in energy production. The proposed function of PLAT/LH2 domains is to mediate interaction with lipids or membrane bound proteins.
Probab=41.57 E-value=1.3e+02 Score=21.65 Aligned_cols=45 Identities=22% Similarity=0.285 Sum_probs=30.0
Q ss_pred EEEEEECCccc-ccCCeEEEEeCCEEEEEEeccCcccCCCCeEEEEecCCCC
Q 037002 114 VWRQFRMPMSA-DLDHVKAHLENGVLRITVPKLVEEKKRQPKVINIDEEPGN 164 (177)
Q Consensus 114 f~r~~~LP~~v-d~~~i~A~~~~GvL~I~lPK~~~~~~~~~~~I~I~~~~~~ 164 (177)
|..-|....++ +...|+-.+++-+|....|+.. .+.|.|+.++.+
T Consensus 46 ys~li~~d~dvG~l~~Vkf~W~~~~~n~~~p~~~------~~~I~Vq~Ge~~ 91 (113)
T cd01759 46 YSAFIDVDVDVGPLTKVKFIWNNNVINITLPKVG------AEKITVQSGKDG 91 (113)
T ss_pred EEEEEEccCCCCCEEEEEEEEeCCccCCCCCeEE------EEEEEEEeCCCc
Confidence 44444444444 5566777778888877777774 468999977644
No 80
>KOG3260 consensus Calcyclin-binding protein CacyBP [Signal transduction mechanisms]
Probab=41.14 E-value=94 Score=24.76 Aligned_cols=76 Identities=5% Similarity=0.115 Sum_probs=53.8
Q ss_pred eeeeCCeEEEEEEcCCCCCCCeEEEEecCcEEEEEEEEecCCccceeecCceEEEEeeccceEEEEEECCcccccCCeEE
Q 037002 52 LALTPTSHVITLDIPRMKKDDAKIAVEENRVLRVSGERKSDDYYKEEVEGDKWHRAERPFGKVWRQFRMPMSADLDHVKA 131 (177)
Q Consensus 52 i~e~~~~y~i~~~lPG~~~edI~V~~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~E~~~~~f~r~~~LP~~vd~~~i~A 131 (177)
|.-+++...+-+.|-|+..++|.|.+.. +.|-+..+.- ++..|.+. -=.|-..+++++-+-
T Consensus 79 WDQs~kfVK~yItL~GV~eenVqv~ftp-~Sldl~v~dl---------qGK~y~~~---------vnnLlk~I~vEks~~ 139 (224)
T KOG3260|consen 79 WDQSNKFVKMYITLEGVDEENVQVEFTP-MSLDLKVHDL---------QGKNYRMI---------VNNLLKPISVEKSSK 139 (224)
T ss_pred ccccCCeeEEEEEeecccccceeEEecc-cceeeeeeec---------CCcceeee---------hhhhccccChhhccc
Confidence 4557888889999999999999999999 8888876632 23333221 012345688888777
Q ss_pred EEeCCEEEEEEeccC
Q 037002 132 HLENGVLRITVPKLV 146 (177)
Q Consensus 132 ~~~~GvL~I~lPK~~ 146 (177)
.++-....|.+.|.+
T Consensus 140 kvKtd~v~I~~kkVe 154 (224)
T KOG3260|consen 140 KVKTDTVLILCKKVE 154 (224)
T ss_pred ccccceEEEeehhhh
Confidence 777777788886554
No 81
>cd06467 p23_NUDC_like p23_like domain of NUD (nuclear distribution) C and similar proteins. Aspergillus nidulas (An) NUDC is needed for nuclear movement. AnNUDC is localized at the hyphal cortex, and binds NUDF at spindle pole bodies (SPBs) and in the cytoplasm at different stages in the cell cycle. At the SPBs it is part of the dynein molecular motor/NUDF complex that regulates microtubule dynamics. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its ext
Probab=40.30 E-value=89 Score=20.37 Aligned_cols=31 Identities=19% Similarity=0.273 Sum_probs=26.8
Q ss_pred eEEEEEECCcccccCCeEEEEeCCEEEEEEe
Q 037002 113 KVWRQFRMPMSADLDHVKAHLENGVLRITVP 143 (177)
Q Consensus 113 ~f~r~~~LP~~vd~~~i~A~~~~GvL~I~lP 143 (177)
...-.|.+|..+..+.+...+.+.-|+|.++
T Consensus 9 ~V~i~i~~~~~~~~~dv~v~~~~~~l~v~~~ 39 (85)
T cd06467 9 EVTVTIPLPEGTKSKDVKVEITPKHLKVGVK 39 (85)
T ss_pred EEEEEEECCCCCcceeEEEEEEcCEEEEEEC
Confidence 3566788999999999999999899999886
No 82
>cd02175 GH16_lichenase lichenase, member of glycosyl hydrolase family 16. Lichenase, also known as 1,3-1,4-beta-glucanase, is a member of glycosyl hydrolase family 16, that specifically cleaves 1,4-beta-D-glucosidic bonds in mixed-linked beta glucans that also contain 1,3-beta-D-glucosidic linkages. Natural substrates of beta-glucanase are beta-glucans from grain endosperm cell walls or lichenan from the Islandic moss, Cetraria islandica. This protein is found not only in bacteria but also in anaerobic fungi. This domain includes two seven-stranded antiparallel beta-sheets that are adjacent to one another forming a compact, jellyroll beta-sandwich structure.
Probab=40.05 E-value=80 Score=24.83 Aligned_cols=50 Identities=6% Similarity=0.120 Sum_probs=28.8
Q ss_pred CCCCeEEEEecCcEEEEEEEEecCCccceeecCceEEE-EeeccceEEEEEECCcc
Q 037002 69 KKDDAKIAVEENRVLRVSGERKSDDYYKEEVEGDKWHR-AERPFGKVWRQFRMPMS 123 (177)
Q Consensus 69 ~~edI~V~~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~-~E~~~~~f~r~~~LP~~ 123 (177)
++++|+|. + +.|+|++.+.... ...-..+.+.. .-..+|.|+-++++|..
T Consensus 30 ~~~nv~v~--~-g~L~l~~~~~~~~--~~~~tsg~i~S~~~f~yG~~ear~k~~~~ 80 (212)
T cd02175 30 SADNVEFS--D-GGLALTLTNDTYG--EKPYACGEYRTRGFYGYGRYEVRMKPAKG 80 (212)
T ss_pred ccccEEEE--C-CeEEEEEeCCcCC--CCccccceEEECceEEeeEEEEEEEcCCC
Confidence 46676655 6 8899998765410 00111222222 22368899999999853
No 83
>PF06988 NifT: NifT/FixU protein; InterPro: IPR009727 This family consists of several NifT and FixU bacterial proteins. The function of NifT is unknown although it is thought that the protein may be involved in biosynthesis of the FeMo cofactor of nitrogenase although perturbation of nifT expression in Klebsiella pneumoniae has only a limited effect on nitrogen fixation [].; GO: 0009399 nitrogen fixation; PDB: 2JN4_A.
Probab=38.27 E-value=34 Score=22.34 Aligned_cols=22 Identities=32% Similarity=0.377 Sum_probs=15.4
Q ss_pred eCCEEEEEEeccCcccCCCCeEEEEe
Q 037002 134 ENGVLRITVPKLVEEKKRQPKVINID 159 (177)
Q Consensus 134 ~~GvL~I~lPK~~~~~~~~~~~I~I~ 159 (177)
.+|.|++.+||+.-+ ..++.++
T Consensus 9 ~~G~ls~YVpKKDLE----E~Vv~~E 30 (64)
T PF06988_consen 9 GAGGLSAYVPKKDLE----EPVVSME 30 (64)
T ss_dssp SS--EEEEETTTTEE----EEEEEES
T ss_pred CCcCEEEEEeCCccc----cceeeee
Confidence 468999999999866 4566765
No 84
>PF01491 Frataxin_Cyay: Frataxin-like domain; InterPro: IPR002908 The eukaryotic proteins in this entry include frataxin, the protein that is mutated in Friedreich's ataxia [], and related sequences. Friedreich's ataxia is a progressive neurodegenerative disorder caused by loss of function mutations in the gene encoding frataxin (FRDA). Frataxin mRNA is predominantly expressed in tissues with a high metabolic rate (including liver, kidney, brown fat and heart). Mouse and yeast frataxin homologues contain a potential N-terminal mitochondrial targeting sequence, and human frataxin has been observed to co-localise with a mitochondrial protein. Furthermore, disruption of the yeast gene has been shown to result in mitochondrial dysfunction. Friedreich's ataxia is thus believed to be a mitochondrial disease caused by a mutation in the nuclear genome (specifically, expansion of an intronic GAA triplet repeat) [, , ]. The bacterial proteins in this entry are iron-sulphur cluster (FeS) metabolism CyaY proteins hmologous to eukaryotic frataxin. Partial Phylogenetic Profiling [] suggests that CyaY most likely functions as part of the ISC system for FeS cluster biosynthesis, and is supported by expermimental data in some species [, ]. ; PDB: 1EW4_A 2P1X_A 1SOY_A 2EFF_A 3T3T_B 3S4M_A 3T3K_A 3S5D_A 1LY7_A 3T3X_B ....
Probab=37.14 E-value=71 Score=22.77 Aligned_cols=19 Identities=26% Similarity=0.372 Sum_probs=15.9
Q ss_pred CeEEEEeCCEEEEEEeccC
Q 037002 128 HVKAHLENGVLRITVPKLV 146 (177)
Q Consensus 128 ~i~A~~~~GvL~I~lPK~~ 146 (177)
.+.+.+.+|||+|++|...
T Consensus 31 d~d~e~~~gVLti~~~~~~ 49 (109)
T PF01491_consen 31 DIDVERSGGVLTIEFPDGG 49 (109)
T ss_dssp TEEEEEETTEEEEEETTSE
T ss_pred ceEEEccCCEEEEEECCCC
Confidence 5788999999999997553
No 85
>KOG3591 consensus Alpha crystallins [Posttranslational modification, protein turnover, chaperones]
Probab=36.94 E-value=29 Score=27.09 Aligned_cols=30 Identities=10% Similarity=0.264 Sum_probs=25.8
Q ss_pred EEEcC-CCCCCCeEEEEecCcEEEEEEEEec
Q 037002 62 TLDIP-RMKKDDAKIAVEENRVLRVSGERKS 91 (177)
Q Consensus 62 ~~~lP-G~~~edI~V~~~~~~~L~I~g~~~~ 91 (177)
+.-|| |++++.|.=.+..+|+|+|+|.+..
T Consensus 120 ~y~LP~~vdp~~V~S~LS~dGvLtI~ap~~~ 150 (173)
T KOG3591|consen 120 KYLLPEDVDPTSVTSTLSSDGVLTIEAPKPP 150 (173)
T ss_pred EecCCCCCChhheEEeeCCCceEEEEccCCC
Confidence 34565 9999999999988899999999876
No 86
>KOG3413 consensus Mitochondrial matrix protein frataxin, involved in Fe/S protein biosynthesis [Inorganic ion transport and metabolism]
Probab=36.55 E-value=18 Score=27.65 Aligned_cols=26 Identities=12% Similarity=0.254 Sum_probs=18.8
Q ss_pred CCcccccCCeEEEEeCCEEEEEEecc
Q 037002 120 MPMSADLDHVKAHLENGVLRITVPKL 145 (177)
Q Consensus 120 LP~~vd~~~i~A~~~~GvL~I~lPK~ 145 (177)
|-+.+..+.--+.|.||||+|.|+-.
T Consensus 65 l~e~~~~~~~Dv~y~~GVLTl~lg~~ 90 (156)
T KOG3413|consen 65 LAEEVPGEGFDVDYADGVLTLKLGSV 90 (156)
T ss_pred HHhhcCccccccccccceEEEEecCc
Confidence 33445555556779999999999944
No 87
>PTZ00179 60S ribosomal protein L9; Provisional
Probab=36.32 E-value=1.2e+02 Score=24.00 Aligned_cols=21 Identities=29% Similarity=0.703 Sum_probs=17.8
Q ss_pred CCCeEEEEecCcEEEEEEEEec
Q 037002 70 KDDAKIAVEENRVLRVSGERKS 91 (177)
Q Consensus 70 ~edI~V~~~~~~~L~I~g~~~~ 91 (177)
|+.|+|++.+ +.|+|+|.+-.
T Consensus 12 P~~V~V~i~~-~~ItVkGpkG~ 32 (189)
T PTZ00179 12 PEDVTVSVKD-RIVTVKGKRGT 32 (189)
T ss_pred CCCCEEEEeC-CEEEEECCCcE
Confidence 6899999999 89999998543
No 88
>PF07873 YabP: YabP family; InterPro: IPR022476 Members of this protein family are the YabP and YqfC proteins of the bacterial sporulation program, as found in Bacillus subtilis, Clostridium tetani, and other spore-forming members of the Firmicutes. ; PDB: 2KYI_B 3IPF_B 2KS0_A.
Probab=35.67 E-value=32 Score=22.20 Aligned_cols=23 Identities=13% Similarity=0.367 Sum_probs=19.5
Q ss_pred CCCCCeEEEEecCcEEEEEEEEec
Q 037002 68 MKKDDAKIAVEENRVLRVSGERKS 91 (177)
Q Consensus 68 ~~~edI~V~~~~~~~L~I~g~~~~ 91 (177)
|+.+.|.|.... +.|.|.|+.=.
T Consensus 23 f~~~~I~l~t~~-g~l~I~G~~L~ 45 (66)
T PF07873_consen 23 FDDEEIRLNTKK-GKLTIKGEGLV 45 (66)
T ss_dssp EETTEEEEEETT-EEEEEEEEEEE
T ss_pred ECCCEEEEEeCC-EEEEEECceEE
Confidence 578889999999 99999999644
No 89
>PF14730 DUF4468: Domain of unknown function (DUF4468) with TBP-like fold
Probab=35.21 E-value=1.4e+02 Score=20.19 Aligned_cols=16 Identities=19% Similarity=0.420 Sum_probs=12.7
Q ss_pred eEEEEeCCEEEEEEec
Q 037002 129 VKAHLENGVLRITVPK 144 (177)
Q Consensus 129 i~A~~~~GvL~I~lPK 144 (177)
+++..+||-.++++-.
T Consensus 70 l~i~~kDgk~r~~~~~ 85 (91)
T PF14730_consen 70 LIIDCKDGKYRLTITN 85 (91)
T ss_pred EEEEEECCEEEEEEEE
Confidence 5777899998888754
No 90
>cd06494 p23_NUDCD2_like p23-like NUD (nuclear distribution) C-like found in human NUDC domain-containing protein 2 (NUDCD2) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=30.27 E-value=99 Score=21.38 Aligned_cols=30 Identities=20% Similarity=0.361 Sum_probs=27.0
Q ss_pred eEEEEEECCcccccCCeEEEEeCCEEEEEE
Q 037002 113 KVWRQFRMPMSADLDHVKAHLENGVLRITV 142 (177)
Q Consensus 113 ~f~r~~~LP~~vd~~~i~A~~~~GvL~I~l 142 (177)
...-+|+||.++....+...+...-|+|.+
T Consensus 16 eV~v~i~lp~~~~~kdv~V~i~~~~l~V~~ 45 (93)
T cd06494 16 EVFIEVNVPPGTRAKDVKCKLGSRDISLAV 45 (93)
T ss_pred EEEEEEECCCCCceeeEEEEEEcCEEEEEE
Confidence 466788999999999999999999999988
No 91
>cd08023 GH16_laminarinase_like Laminarinase, member of the glycosyl hydrolase family 16. Laminarinase, also known as glucan endo-1,3-beta-D-glucosidase, is a glycosyl hydrolase family 16 member that hydrolyzes 1,3-beta-D-glucosidic linkages in 1,3-beta-D-glucans such as laminarins, curdlans, paramylons, and pachymans, with very limited action on mixed-link (1,3-1,4-)-beta-D-glucans.
Probab=29.96 E-value=2.6e+02 Score=22.00 Aligned_cols=55 Identities=13% Similarity=0.229 Sum_probs=31.0
Q ss_pred CCCCCCCeEEEEecCcEEEEEEEEecCCc-cceeecCceEE---EEeeccceEEEEEECCcc
Q 037002 66 PRMKKDDAKIAVEENRVLRVSGERKSDDY-YKEEVEGDKWH---RAERPFGKVWRQFRMPMS 123 (177)
Q Consensus 66 PG~~~edI~V~~~~~~~L~I~g~~~~~~~-~~~~~~~~~~~---~~E~~~~~f~r~~~LP~~ 123 (177)
.-++++++.| .+ +.|+|++.+..... .......+.+. .....+|.|+-+++||..
T Consensus 33 ~~~~~~nv~v--~~-G~L~i~~~~~~~~~~~~~~~~sg~i~S~~~~~~~yG~~E~r~k~~~~ 91 (235)
T cd08023 33 YTYRPENAYV--ED-GNLVITARKEPDKGGDGYPYTSGRITTKGKFSFTYGRVEARAKLPKG 91 (235)
T ss_pred EeCCCCCeEE--EC-CEEEEEEEECCCCCCCcccEEEEEEEECCCcceeCCEEEEEEEccCC
Confidence 3456777665 47 89999998754100 00001111222 123467899999999853
No 92
>PF14814 UB2H: Bifunctional transglycosylase second domain; PDB: 3FWL_A 3VMA_A.
Probab=29.51 E-value=93 Score=20.98 Aligned_cols=43 Identities=16% Similarity=0.264 Sum_probs=25.0
Q ss_pred cCceEEEEeeccceEEEEEECCcccccCC-eEEEEeCCEE-EEEE
Q 037002 100 EGDKWHRAERPFGKVWRQFRMPMSADLDH-VKAHLENGVL-RITV 142 (177)
Q Consensus 100 ~~~~~~~~E~~~~~f~r~~~LP~~vd~~~-i~A~~~~GvL-~I~l 142 (177)
.-+.|......+--|.|.|.+|+...+.. +.-.|.+|-+ .|.-
T Consensus 29 ~pG~y~~~g~~i~i~~R~F~F~Dg~e~~~~~~l~f~~~~V~~i~~ 73 (85)
T PF14814_consen 29 RPGEYSRSGNRIEIYTRGFDFPDGQEPARRVRLTFSGGRVSSIQD 73 (85)
T ss_dssp STTEEEEETTEEEEEE--EEETTCEE--EEEEEEEETTEEEEEEE
T ss_pred CCeEEEEECCEEEEEECCCCCCCCCccCEEEEEEECCCEEEEEEE
Confidence 34455555555556899999999876665 6666766644 3443
No 93
>TIGR02856 spore_yqfC sporulation protein YqfC. This small protein, designated YqfC in Bacillus subtilis, is both restricted to and universal in sporulating species of the Firmcutes, such as Bacillus subtilis and Clostridium perfringens. It is part of the sigma(E)-controlled regulon, and its mutation leads to a sporulation defect.
Probab=28.85 E-value=43 Score=22.91 Aligned_cols=23 Identities=9% Similarity=0.279 Sum_probs=19.9
Q ss_pred CCCCCeEEEEecCcEEEEEEEEec
Q 037002 68 MKKDDAKIAVEENRVLRVSGERKS 91 (177)
Q Consensus 68 ~~~edI~V~~~~~~~L~I~g~~~~ 91 (177)
|+.+.|.|.... +.|.|+|+.=.
T Consensus 41 y~~~~I~l~t~~-G~l~I~G~~L~ 63 (85)
T TIGR02856 41 FSPEEVKLNSTN-GKITIEGKNFV 63 (85)
T ss_pred ECCCEEEEEcCc-eEEEEEcccEE
Confidence 588999999999 99999999644
No 94
>PRK11198 LysM domain/BON superfamily protein; Provisional
Probab=27.65 E-value=82 Score=23.59 Aligned_cols=25 Identities=28% Similarity=0.413 Sum_probs=22.1
Q ss_pred CCCCCCCeEEEEecCcEEEEEEEEec
Q 037002 66 PRMKKDDAKIAVEENRVLRVSGERKS 91 (177)
Q Consensus 66 PG~~~edI~V~~~~~~~L~I~g~~~~ 91 (177)
.|+...+|.|.+.+ |+++++|.-..
T Consensus 38 ~~~~~~~i~V~v~~-G~v~l~G~v~s 62 (147)
T PRK11198 38 QGLGDADVNVQVED-GKATVSGDAAS 62 (147)
T ss_pred cCCCcCCceEEEeC-CEEEEEEEeCC
Confidence 57888899999999 99999999765
No 95
>cd02178 GH16_beta_agarase Beta-agarase, member of glycosyl hydrolase family 16. Beta-agarase is a glycosyl hydrolase family 16 (GH16) member that hydrolyzes the internal beta-1,4-linkage of agarose, a hydrophilic polysaccharide found in the cell wall of Rhodophyceaea, marine red algae. Agarose is a linear chain of galactose units linked by alternating L-alpha-1,3- and D-beta-1,4-linkages that are additionally modified by a 3,6-anhydro-bridge. Agarose forms thermo-reversible gels that are widely used in the food industry or as a laboratory medium. While beta-agarases are also found in two other families derived from the sequence-based classification of glycosyl hydrolases (GH50, and GH86) the GH16 members are most abundant. This domain adopts a curved beta-sandwich conformation, with a tunnel-shaped active site cavity, referred to as a jellyroll fold.
Probab=27.24 E-value=1.2e+02 Score=24.62 Aligned_cols=44 Identities=20% Similarity=0.236 Sum_probs=26.6
Q ss_pred EEEecCcEEEEEEEEecCCccceeecCceEE------EEeeccceEEEEEECCc
Q 037002 75 IAVEENRVLRVSGERKSDDYYKEEVEGDKWH------RAERPFGKVWRQFRMPM 122 (177)
Q Consensus 75 V~~~~~~~L~I~g~~~~~~~~~~~~~~~~~~------~~E~~~~~f~r~~~LP~ 122 (177)
|.+.+ +.|+|++.+.... .......|. +....+|.|+-+++||.
T Consensus 60 v~v~~-G~L~i~a~~~~~~---~~~~~~~~tsg~i~t~~~~~YG~~EaR~K~p~ 109 (258)
T cd02178 60 VSVED-GNLVLSATRHPGT---ELGNGYKVTTGSITSKEKVKYGYFEARAKASN 109 (258)
T ss_pred eEEEC-CEEEEEEEcCCCC---cCCCCccEEEEEEEeCCceEEEEEEEEEEcCC
Confidence 45667 8999999876510 000111111 22336789999999995
No 96
>cd00503 Frataxin Frataxin is a nuclear-encoded mitochondrial protein implicated in Friedreich's ataxia (FRDA), an human autosomal recessive neurodegenerative disease; Frataxin is found in eukaryotes and in purple bacteria; lack of frataxin causes iron to accumulate in the mitochondrial matrix suggesting that frataxin is involved in mitochondrial iron homeostasis and possibly in iron transport; the domain has an alpha-beta fold consisting of two helices flanking an antiparallel beta sheet.
Probab=27.03 E-value=65 Score=22.91 Aligned_cols=19 Identities=21% Similarity=0.335 Sum_probs=15.3
Q ss_pred CCeEEEEeCCEEEEEEecc
Q 037002 127 DHVKAHLENGVLRITVPKL 145 (177)
Q Consensus 127 ~~i~A~~~~GvL~I~lPK~ 145 (177)
..+-+.+.+|||+|+++..
T Consensus 28 ~d~D~e~~~gVLti~f~~~ 46 (105)
T cd00503 28 ADIDVETQGGVLTLTFGNG 46 (105)
T ss_pred cCEeeeccCCEEEEEECCC
Confidence 4567788999999999843
No 97
>PF08845 SymE_toxin: Toxin SymE, type I toxin-antitoxin system; InterPro: IPR014944 This entry represents a SOS-induced gene whose product shows homology to the antitoxin MazE (SymE), the coding region contains a cis-encoded antisense RNA. The small antisense RNA and the gene have the all the hallmarks of a toxin-antitoxin module. The synthesis of the SymE is tightly repressed at multiple levels; at the transcriptional level by the LexA repressor, at the level of mRNA stability and translation by the SymR RNA and at the level of protein stability by the Lon protease. SymE co-purifies with ribosomes and overproduction of the protein leads to cell growth inhibition, decreased protein synthesis and increased RNA degradation. These properties are shared with several RNA endonuclease toxins of toxin-antitoxin modules. It seems probable that the SymE protein represents an evolutionary derivative of a toxin containing the AbrB fold, whose representatives are typically antitoxins. The SymE promoted cleavage of RNA cleavage may be important for the recycling of RNAs damaged under SOS-inducing conditions []. ; GO: 0003723 RNA binding, 0016788 hydrolase activity, acting on ester bonds, 0016070 RNA metabolic process, 0005737 cytoplasm
Probab=26.74 E-value=83 Score=19.90 Aligned_cols=24 Identities=21% Similarity=0.246 Sum_probs=19.1
Q ss_pred EEcCCCCC-CCeEEEEecCcEEEEEE
Q 037002 63 LDIPRMKK-DDAKIAVEENRVLRVSG 87 (177)
Q Consensus 63 ~~lPG~~~-edI~V~~~~~~~L~I~g 87 (177)
++-.||.. +.|+|++.+ +.|+|+.
T Consensus 33 L~~aGF~~G~~v~V~v~~-g~lvIt~ 57 (57)
T PF08845_consen 33 LEEAGFTIGDPVKVRVMP-GCLVITP 57 (57)
T ss_pred hHHhCCCCCCEEEEEEEC-CEEEEeC
Confidence 45678866 589999999 8999863
No 98
>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.
Probab=26.58 E-value=2e+02 Score=19.17 Aligned_cols=27 Identities=7% Similarity=0.024 Sum_probs=23.3
Q ss_pred CCeEEEEEEcCCCCCCCeEEEEecCcE
Q 037002 56 PTSHVITLDIPRMKKDDAKIAVEENRV 82 (177)
Q Consensus 56 ~~~y~i~~~lPG~~~edI~V~~~~~~~ 82 (177)
++...|...+-||-|.+|.|+...++.
T Consensus 14 ~~~~~L~C~a~gF~P~~i~v~W~~~g~ 40 (93)
T cd07698 14 DGSLTLSCHATGFYPRDIEVTWLRDGE 40 (93)
T ss_pred CCcEEEEEEEEEEeCCCcEEEEEECCE
Confidence 567899999999999999999977454
No 99
>KOG0100 consensus Molecular chaperones GRP78/BiP/KAR2, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=26.04 E-value=3e+02 Score=25.02 Aligned_cols=58 Identities=19% Similarity=0.310 Sum_probs=38.9
Q ss_pred ccceEEEEEECCcccccCCeEEEE---eCCEEEEEEeccCcccCCCCeEEEEecCCCCCCccch
Q 037002 110 PFGKVWRQFRMPMSADLDHVKAHL---ENGVLRITVPKLVEEKKRQPKVINIDEEPGNSSDEDV 170 (177)
Q Consensus 110 ~~~~f~r~~~LP~~vd~~~i~A~~---~~GvL~I~lPK~~~~~~~~~~~I~I~~~~~~~~~~~~ 170 (177)
-.|.|.-+=-.|.+--.-+|..+| .||||.|+.--+... ....|.|....+.-+.+++
T Consensus 485 lLGkFdltGipPAPRGvpqIEVtFevDangiL~VsAeDKgtg---~~~kitItNd~~rLt~EdI 545 (663)
T KOG0100|consen 485 LLGKFDLTGIPPAPRGVPQIEVTFEVDANGILQVSAEDKGTG---KKEKITITNDKGRLTPEDI 545 (663)
T ss_pred ccccccccCCCCCCCCCccEEEEEEEccCceEEEEeeccCCC---CcceEEEecCCCCCCHHHH
Confidence 356666554445554455566665 799999999877644 5678999887766555554
No 100
>PRK00446 cyaY frataxin-like protein; Provisional
Probab=25.55 E-value=73 Score=22.70 Aligned_cols=18 Identities=22% Similarity=0.329 Sum_probs=15.0
Q ss_pred eEEEEeCCEEEEEEeccC
Q 037002 129 VKAHLENGVLRITVPKLV 146 (177)
Q Consensus 129 i~A~~~~GvL~I~lPK~~ 146 (177)
+.+.+.+|||+|+++...
T Consensus 29 ~D~e~~~gVLti~f~~~~ 46 (105)
T PRK00446 29 IDCERNGGVLTLTFENGS 46 (105)
T ss_pred eeeeccCCEEEEEECCCC
Confidence 667889999999998653
No 101
>TIGR02892 spore_yabP sporulation protein YabP. Members of this protein family are the YabP protein of the bacterial sporulation program, as found in Bacillus subtilis, Clostridium tetani, and other spore-forming members of the Firmicutes. In Bacillus subtilis, a yabP single mutant appears to sporulate and germinate normally (PubMed:11283287), but is in an operon with yabQ (essential for formation of the spore cortex), it near-universal among endospore-forming bacteria, and is found nowhere else. It is likely, therefore, that YabP does have a function in sporulation or germination, one that is either unappreciated or partially redundant with that of another protein.
Probab=25.32 E-value=59 Score=22.36 Aligned_cols=23 Identities=9% Similarity=0.245 Sum_probs=18.6
Q ss_pred CCCCCeEEEEecCcEEEEEEEEec
Q 037002 68 MKKDDAKIAVEENRVLRVSGERKS 91 (177)
Q Consensus 68 ~~~edI~V~~~~~~~L~I~g~~~~ 91 (177)
|+++.|.+.... +.|.|+|+.=.
T Consensus 22 fd~~~I~l~T~~-G~L~I~G~~L~ 44 (85)
T TIGR02892 22 FDDEEILLETVM-GFLTIKGQELK 44 (85)
T ss_pred ECCCEEEEEeCc-EEEEEEcceeE
Confidence 577888888888 89999998543
No 102
>TIGR03421 FeS_CyaY iron donor protein CyaY. Members of this protein family are the iron-sulfur cluster (FeS) metabolism protein CyaY, a homolog of eukaryotic frataxin. ISC is one of several bacterial systems for FeS assembly; we find by Partial Phylogenetic Profiling vs. the ISC system that CyaY most like work with the ISC system for FeS cluster biosynthesis. A study of of cyaY mutants in Salmonella enterica bears this out. Although the trusted cutoff is set low enough to include eukaryotic frataxin sequences, a narrower, exception-type model (TIGR03421) identifies identifies members of that specific set.
Probab=24.78 E-value=66 Score=22.79 Aligned_cols=17 Identities=24% Similarity=0.350 Sum_probs=14.4
Q ss_pred eEEEEeCCEEEEEEecc
Q 037002 129 VKAHLENGVLRITVPKL 145 (177)
Q Consensus 129 i~A~~~~GvL~I~lPK~ 145 (177)
+.+.+.+|||+|+++..
T Consensus 27 ~D~e~~~gVLti~f~~~ 43 (102)
T TIGR03421 27 IDCERAGGVLTLTFENG 43 (102)
T ss_pred eeeecCCCEEEEEECCC
Confidence 66778899999999854
No 103
>cd02180 GH16_fungal_KRE6_glucanase Saccharomyces cerevisiae KRE6 and related glucanses, member of glycosyl hydrolase family 16. KRE6 is a Saccharomyces cerevisiae glucanase that participates in the synthesis of beta-1,6-glucan, a major structural component of the cell wall. It is a golgi membrane protein required for normal beta-1,6-glucan levels in the cell wall. KRE6 is closely realted to laminarinase, a glycosyl hydrolase family 16 member that hydrolyzes 1,3-beta-D-glucosidic linkages in 1,3-beta-D-glucans such as laminarins, curdlans, paramylons, and pachymans, with very limited action on mixed-link (1,3-1,4-)-beta-D-glucans.
Probab=24.23 E-value=1.8e+02 Score=24.53 Aligned_cols=49 Identities=10% Similarity=0.063 Sum_probs=29.2
Q ss_pred CCCCeEEEEecCcEEEEEEEEecCCccceeecCceEE---EEeeccceEEEEEECCc
Q 037002 69 KKDDAKIAVEENRVLRVSGERKSDDYYKEEVEGDKWH---RAERPFGKVWRQFRMPM 122 (177)
Q Consensus 69 ~~edI~V~~~~~~~L~I~g~~~~~~~~~~~~~~~~~~---~~E~~~~~f~r~~~LP~ 122 (177)
.++++ .+.+ +.|+|++.+.... ...-..+.+. +....+|.|+-+++||.
T Consensus 39 ~~~nv--~v~~-G~L~I~a~~~~~~--~~~ytSg~i~T~~k~~f~yG~~EaR~klp~ 90 (295)
T cd02180 39 DPDAV--TTIN-GSLRITMDQFRNH--GLNFRSGMLQSWNKLCFTGGYIEASASLPG 90 (295)
T ss_pred cCcCe--EecC-CeEEEEEEeecCC--CCCEEEEEEEECCcceeeCCEEEEEEECCC
Confidence 44665 4457 8999999875410 0001112222 23456889999999996
No 104
>COG0097 RplF Ribosomal protein L6P/L9E [Translation, ribosomal structure and biogenesis]
Probab=22.80 E-value=1.6e+02 Score=23.14 Aligned_cols=43 Identities=19% Similarity=0.359 Sum_probs=0.0
Q ss_pred CCCeEEEEecCcEEEEEEEEecCCccceeecCceEEEEeeccceEEEEEECCcccccCCeEEEEeCCEEEEE
Q 037002 70 KDDAKIAVEENRVLRVSGERKSDDYYKEEVEGDKWHRAERPFGKVWRQFRMPMSADLDHVKAHLENGVLRIT 141 (177)
Q Consensus 70 ~edI~V~~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~E~~~~~f~r~~~LP~~vd~~~i~A~~~~GvL~I~ 141 (177)
|++|+|++++ +.++++|.+-. |-..+...-|.-..+|+.+.+.
T Consensus 12 P~gV~V~i~~-~~v~vkGpkGe----------------------------L~~~~~~~~v~v~~~~~~~vv~ 54 (178)
T COG0097 12 PAGVTVSIEG-QVVTVKGPKGE----------------------------LTREFHDNVVKVEVEDNILVVR 54 (178)
T ss_pred CCCeEEEEec-cEEEEECCCcE----------------------------EEEEecCcceEEEecCCEEEEe
No 105
>PF08300 HCV_NS5a_1a: Hepatitis C virus non-structural 5a zinc finger domain; InterPro: IPR013192 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in the non-structural 5a protein (NS5a) in Hepatitis C virus. The molecular function of NS5a is uncertain, but it is phosphorylated when expressed in mammalian cells. It is thought to interact with the dsRNA dependent (interferon inducible) kinase PKR, P19525 from SWISSPROT [, ]. This region corresponds to the N-terminal zinc binding domain (1a) []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003968 RNA-directed RNA polymerase activity, 0004252 serine-type endopeptidase activity, 0008270 zinc ion binding, 0017111 nucleoside-triphosphatase activity, 0006355 regulation of transcription, DNA-dependent, 0006915 apoptosis, 0030683 evasion by virus of host immune response, 0005789 endoplasmic reticulum membrane, 0016021 integral to membrane; PDB: 1ZH1_B 3FQM_A 3FQQ_B.
Probab=22.01 E-value=1.2e+02 Score=19.64 Aligned_cols=19 Identities=37% Similarity=0.630 Sum_probs=14.5
Q ss_pred CeEEEEeCCEEEEEEeccC
Q 037002 128 HVKAHLENGVLRITVPKLV 146 (177)
Q Consensus 128 ~i~A~~~~GvL~I~lPK~~ 146 (177)
.|++.++||-++|.=||.=
T Consensus 29 ~ItGhVknG~mri~gpktC 47 (62)
T PF08300_consen 29 VITGHVKNGSMRIYGPKTC 47 (62)
T ss_dssp EEEEEEETTEEEEE--TTS
T ss_pred EEeEEEeCCeEEEecChhh
Confidence 4789999999999999863
No 106
>PRK13726 conjugal transfer pilus assembly protein TraE; Provisional
Probab=21.83 E-value=1.5e+02 Score=23.40 Aligned_cols=21 Identities=10% Similarity=0.162 Sum_probs=14.1
Q ss_pred CCCeEEEEecCcEEEEEEEEec
Q 037002 70 KDDAKIAVEENRVLRVSGERKS 91 (177)
Q Consensus 70 ~edI~V~~~~~~~L~I~g~~~~ 91 (177)
+..+.|.... +.+.|+|..+.
T Consensus 130 ~~~i~v~~~~-~~V~V~Gtlkt 150 (188)
T PRK13726 130 QTSVRVWPQY-GRVDIRGVLKT 150 (188)
T ss_pred eeeEEEccCC-CEEEEEEEEEE
Confidence 3566666666 77888888654
No 107
>cd02182 GH16_Strep_laminarinase_like Streptomyces laminarinase-like, member of glycosyl hydrolase family 16. Proteins similar to Streptomyces sioyaensis beta-1,3-glucanase (laminarinase) present in Actinomycetales as well as Peziomycotina. Laminarinases belong to glycosyl hydrolase family 16 and hydrolyze the glycosidic bond of the 1,3-beta-linked glucan, a major component of fungal and plant cell walls and the structural and storage polysaccharides (laminarin) of marine macro-algae. Members of the GH16 family have a conserved jelly roll fold with an active site channel.
Probab=21.46 E-value=2e+02 Score=23.35 Aligned_cols=46 Identities=9% Similarity=0.110 Sum_probs=25.1
Q ss_pred CCCeEEEEe-cCcEEEEEEEEecCCccceeecCceEEEEee---c----cceEEEEEECCc
Q 037002 70 KDDAKIAVE-ENRVLRVSGERKSDDYYKEEVEGDKWHRAER---P----FGKVWRQFRMPM 122 (177)
Q Consensus 70 ~edI~V~~~-~~~~L~I~g~~~~~~~~~~~~~~~~~~~~E~---~----~~~f~r~~~LP~ 122 (177)
++++. +. + +.|+|++.+.. ...-..+++..+.. . ++.|+-+++||.
T Consensus 45 ~~n~~--v~~d-G~L~I~a~~~~----~~~ytSg~i~s~~~~~~~~~gg~~~~EaRik~p~ 98 (259)
T cd02182 45 TANVQ--LSGN-GTLQITPLRDG----SGKWTSGRIETTRTDFAAPPGGKLRVEASIRLGD 98 (259)
T ss_pred CcCEE--EcCC-CeEEEEEEecC----CCCEEEEEEEECCccccccCCCcEEEEEEEECCC
Confidence 45554 45 5 89999998753 11112222222221 1 126888888885
No 108
>PF14014 DUF4230: Protein of unknown function (DUF4230)
Probab=21.18 E-value=78 Score=23.40 Aligned_cols=33 Identities=18% Similarity=0.216 Sum_probs=23.7
Q ss_pred EEEEECCcccccCCeE---EEE--eCCEEEEEEeccCc
Q 037002 115 WRQFRMPMSADLDHVK---AHL--ENGVLRITVPKLVE 147 (177)
Q Consensus 115 ~r~~~LP~~vd~~~i~---A~~--~~GvL~I~lPK~~~ 147 (177)
.-...+-.++|.++++ -.. +++.|+|+||...-
T Consensus 43 ~~~g~v~~GiDLs~i~~~~i~~d~~~~~i~I~LP~~~i 80 (157)
T PF14014_consen 43 IYPGTVKAGIDLSKIKEEDIEVDEDGKTITITLPPPEI 80 (157)
T ss_pred EEEEEEEEEEEhHHCCcceEEEcCCCCEEEEECCCcEE
Confidence 3333444567888888 667 89999999998653
No 109
>PF05455 GvpH: GvpH; InterPro: IPR008633 This family consists of archaeal GvpH proteins which are thought to be involved in gas vesicle synthesis [].
Probab=20.81 E-value=3.5e+02 Score=21.24 Aligned_cols=36 Identities=8% Similarity=0.142 Sum_probs=29.3
Q ss_pred eCCeEEEEEEcCCCCCCCeEEEEecCcEEEEEEEEec
Q 037002 55 TPTSHVITLDIPRMKKDDAKIAVEENRVLRVSGERKS 91 (177)
Q Consensus 55 ~~~~y~i~~~lPG~~~edI~V~~~~~~~L~I~g~~~~ 91 (177)
.++.|+=++.||--..+-.++++++ ++|.|...+..
T Consensus 134 ~~~~~~krv~L~~~~~e~~~~t~nN-gILEIri~~~~ 169 (177)
T PF05455_consen 134 VGEKYLKRVALPWPDPEITSATFNN-GILEIRIRRTE 169 (177)
T ss_pred cCCceEeeEecCCCccceeeEEEeC-ceEEEEEeecC
Confidence 4555777888886667888999999 99999999876
No 110
>PF13620 CarboxypepD_reg: Carboxypeptidase regulatory-like domain; PDB: 3MN8_D 3P0D_I 3KCP_A 2B59_B 1UWY_A 1H8L_A 1QMU_A 2NSM_A.
Probab=20.56 E-value=1.3e+02 Score=19.17 Aligned_cols=31 Identities=13% Similarity=0.320 Sum_probs=21.3
Q ss_pred eCCeEEEEEEcCCCCCCCe-EEEEecCcEEEE
Q 037002 55 TPTSHVITLDIPRMKKDDA-KIAVEENRVLRV 85 (177)
Q Consensus 55 ~~~~y~i~~~lPG~~~edI-~V~~~~~~~L~I 85 (177)
..+.|.|.+..+|+.+... .|.+..+....|
T Consensus 46 ~~g~Y~l~v~~~g~~~~~~~~v~v~~~~~~~~ 77 (82)
T PF13620_consen 46 PPGTYTLRVSAPGYQPQTQENVTVTAGQTTTV 77 (82)
T ss_dssp -SEEEEEEEEBTTEE-EEEEEEEESSSSEEE-
T ss_pred CCEeEEEEEEECCcceEEEEEEEEeCCCEEEE
Confidence 4578999999999998887 588865344443
No 111
>PF14545 DBB: Dof, BCAP, and BANK (DBB) motif,
Probab=20.29 E-value=2.9e+02 Score=20.89 Aligned_cols=34 Identities=9% Similarity=0.081 Sum_probs=26.8
Q ss_pred eCCeEEEEEEcCCC---CCCCeEEEEecCcEEEEEEE
Q 037002 55 TPTSHVITLDIPRM---KKDDAKIAVEENRVLRVSGE 88 (177)
Q Consensus 55 ~~~~y~i~~~lPG~---~~edI~V~~~~~~~L~I~g~ 88 (177)
-.+.|++.+.+|.+ ....|.|.+.-|+.+.=+..
T Consensus 47 ~~N~yt~~~~aPd~~~~pag~V~v~v~~~g~~~~~~~ 83 (142)
T PF14545_consen 47 WENPYTLQFKAPDFCLEPAGSVNVRVYCDGVSLGTRQ 83 (142)
T ss_pred EECCEEEEEECchhcCCCCceEEEEEEECCEEEEEEe
Confidence 45789999999999 99999999987455443333
Done!