BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037005
(334 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1YH2|A Chain A, Ubiquitin-Conjugating Enzyme Hspc150
Length = 169
Score = 171 bits (432), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 78/127 (61%), Positives = 96/127 (75%)
Query: 1 IEGPEGTVYAKGVFEVKIQIPERYPFQPPSVTFATPIYHPNIDNGGRICLDILNLPPKGA 60
I G T Y KGVF++++ IPERYPF+PP + F TPIYHPNID+ GRICLD+L LPPKGA
Sbjct: 40 ILGGANTPYEKGVFKLEVIIPERYPFEPPQIRFLTPIYHPNIDSAGRICLDVLKLPPKGA 99
Query: 61 WQPSLNISTVLTSIGLLLSEPNPDDGLMCEASQEYKYNRQAFDLKARSMTEKYAKTGIGG 120
W+PSLNI+TVLTSI LL+SEPNPDD LM + S E+KYN+ AF AR TEK+A+
Sbjct: 100 WRPSLNIATVLTSIQLLMSEPNPDDPLMADISSEFKYNKPAFLKNARQWTEKHARQKQKA 159
Query: 121 SQESRLE 127
+E L+
Sbjct: 160 DEEEMLD 166
>pdb|4II2|C Chain C, Crystal Structure Of Ubiquitin Activating Enzyme 1 (uba1)
In Complex With The Ub E2 Ubc4, Ubiquitin, And Atp/mg
Length = 163
Score = 122 bits (305), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 61/121 (50%), Positives = 76/121 (62%), Gaps = 4/121 (3%)
Query: 1 IEGPEGTVYAKGVFEVKIQIPERYPFQPPSVTFATPIYHPNIDNGGRICLDILNLPPKGA 60
I GP + YA GVF + I P YPF+PP V F T IYHPNI++ G ICLDIL +
Sbjct: 37 IMGPADSPYAGGVFFLSIHFPTDYPFKPPKVNFTTRIYHPNINSNGSICLDIL----RDQ 92
Query: 61 WQPSLNISTVLTSIGLLLSEPNPDDGLMCEASQEYKYNRQAFDLKARSMTEKYAKTGIGG 120
W P+L IS VL SI LL++PNPDD L+ E + YK +R ++L AR T KYA G G
Sbjct: 93 WSPALTISKVLLSISSLLTDPNPDDPLVPEIAHVYKTDRSRYELSAREWTRKYAIHGGEG 152
Query: 121 S 121
+
Sbjct: 153 A 153
>pdb|2AYV|A Chain A, Crystal Structure Of A Putative Ubiquitin-Conjugating
Enzyme E2 From Toxoplasma Gondii
Length = 166
Score = 120 bits (300), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 59/114 (51%), Positives = 74/114 (64%), Gaps = 4/114 (3%)
Query: 1 IEGPEGTVYAKGVFEVKIQIPERYPFQPPSVTFATPIYHPNIDNGGRICLDILNLPPKGA 60
I GPE + Y+ GVF + I P YPF+PP V F T IYHPNI++ G ICLDIL K
Sbjct: 57 IMGPEDSPYSGGVFFLNIHFPSDYPFKPPKVNFTTKIYHPNINSQGAICLDIL----KDQ 112
Query: 61 WQPSLNISTVLTSIGLLLSEPNPDDGLMCEASQEYKYNRQAFDLKARSMTEKYA 114
W P+L IS VL SI LL++PNPDD L+ E + YK +R +D AR ++KYA
Sbjct: 113 WSPALTISKVLLSISSLLTDPNPDDPLVPEIAHLYKSDRMRYDQTAREWSQKYA 166
>pdb|1JAT|A Chain A, Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX
Length = 155
Score = 115 bits (287), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 56/115 (48%), Positives = 74/115 (64%), Gaps = 4/115 (3%)
Query: 1 IEGPEGTVYAKGVFEVKIQIPERYPFQPPSVTFATPIYHPNIDNGGRICLDILNLPPKGA 60
IEGPE + Y G+FE+++ +P+ YP + P V F T IYHPNID GRICLD+L K
Sbjct: 41 IEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNIDRLGRICLDVL----KTN 96
Query: 61 WQPSLNISTVLTSIGLLLSEPNPDDGLMCEASQEYKYNRQAFDLKARSMTEKYAK 115
W P+L I TVL SI LL+ PNP+D L + ++++ N Q KAR T+ YAK
Sbjct: 97 WSPALQIRTVLLSIQALLASPNPNDPLANDVAEDWIKNEQGAKAKAREWTKLYAK 151
>pdb|1UR6|A Chain A, Nmr Based Structural Model Of The Ubch5b-Cnot4 Complex
pdb|1W4U|A Chain A, Nmr Solution Structure Of The Ubiquitin Conjugating Enzyme
Ubch5b
pdb|4A49|B Chain B, Structure Of Phosphotyr371-C-Cbl-Ubch5b Complex
pdb|4A4B|C Chain C, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
pdb|4A4C|C Chain C, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
Length = 147
Score = 115 bits (287), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 57/114 (50%), Positives = 73/114 (64%), Gaps = 4/114 (3%)
Query: 1 IEGPEGTVYAKGVFEVKIQIPERYPFQPPSVTFATPIYHPNIDNGGRICLDILNLPPKGA 60
I GP + Y GVF + I P YPF+PP V F T IYHPNI++ G ICLDIL +
Sbjct: 37 IMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDIL----RSQ 92
Query: 61 WQPSLNISTVLTSIGLLLSEPNPDDGLMCEASQEYKYNRQAFDLKARSMTEKYA 114
W P+L IS VL SI LL +PNPDD L+ E ++ YK +R+ ++ AR T+KYA
Sbjct: 93 WSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKYA 146
>pdb|1JBB|A Chain A, Ubiquitin Conjugating Enzyme, Ubc13
pdb|1JBB|B Chain B, Ubiquitin Conjugating Enzyme, Ubc13
Length = 153
Score = 115 bits (287), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 56/115 (48%), Positives = 74/115 (64%), Gaps = 4/115 (3%)
Query: 1 IEGPEGTVYAKGVFEVKIQIPERYPFQPPSVTFATPIYHPNIDNGGRICLDILNLPPKGA 60
IEGPE + Y G+FE+++ +P+ YP + P V F T IYHPNID GRICLD+L K
Sbjct: 39 IEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNIDRLGRICLDVL----KTN 94
Query: 61 WQPSLNISTVLTSIGLLLSEPNPDDGLMCEASQEYKYNRQAFDLKARSMTEKYAK 115
W P+L I TVL SI LL+ PNP+D L + ++++ N Q KAR T+ YAK
Sbjct: 95 WSPALQIRTVLLSIQALLASPNPNDPLANDVAEDWIKNEQGAKAKAREWTKLYAK 149
>pdb|3TGD|A Chain A, Crystal Structure Of The Human Ubiquitin-Conjugating
Enzyme (E2) Ubch5b
Length = 152
Score = 115 bits (287), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 57/114 (50%), Positives = 73/114 (64%), Gaps = 4/114 (3%)
Query: 1 IEGPEGTVYAKGVFEVKIQIPERYPFQPPSVTFATPIYHPNIDNGGRICLDILNLPPKGA 60
I GP + Y GVF + I P YPF+PP V F T IYHPNI++ G ICLDIL +
Sbjct: 42 IMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDIL----RSQ 97
Query: 61 WQPSLNISTVLTSIGLLLSEPNPDDGLMCEASQEYKYNRQAFDLKARSMTEKYA 114
W P+L IS VL SI LL +PNPDD L+ E ++ YK +R+ ++ AR T+KYA
Sbjct: 98 WSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKYA 151
>pdb|3EB6|B Chain B, Structure Of The Ciap2 Ring Domain Bound To Ubch5b
Length = 149
Score = 115 bits (287), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 57/114 (50%), Positives = 73/114 (64%), Gaps = 4/114 (3%)
Query: 1 IEGPEGTVYAKGVFEVKIQIPERYPFQPPSVTFATPIYHPNIDNGGRICLDILNLPPKGA 60
I GP + Y GVF + I P YPF+PP V F T IYHPNI++ G ICLDIL +
Sbjct: 39 IMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDIL----RSQ 94
Query: 61 WQPSLNISTVLTSIGLLLSEPNPDDGLMCEASQEYKYNRQAFDLKARSMTEKYA 114
W P+L IS VL SI LL +PNPDD L+ E ++ YK +R+ ++ AR T+KYA
Sbjct: 95 WSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKYA 148
>pdb|2C4O|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2C4O|C Chain C, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2C4O|D Chain D, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|C Chain C, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|D Chain D, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
Length = 165
Score = 115 bits (287), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 57/114 (50%), Positives = 73/114 (64%), Gaps = 4/114 (3%)
Query: 1 IEGPEGTVYAKGVFEVKIQIPERYPFQPPSVTFATPIYHPNIDNGGRICLDILNLPPKGA 60
I GP + Y GVF + I P YPF+PP V F T IYHPNI++ G ICLDIL +
Sbjct: 55 IMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDIL----RSQ 110
Query: 61 WQPSLNISTVLTSIGLLLSEPNPDDGLMCEASQEYKYNRQAFDLKARSMTEKYA 114
W P+L IS VL SI LL +PNPDD L+ E ++ YK +R+ ++ AR T+KYA
Sbjct: 111 WSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKYA 164
>pdb|2ESK|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b, Wild-Type
Length = 149
Score = 115 bits (287), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 57/114 (50%), Positives = 73/114 (64%), Gaps = 4/114 (3%)
Query: 1 IEGPEGTVYAKGVFEVKIQIPERYPFQPPSVTFATPIYHPNIDNGGRICLDILNLPPKGA 60
I GP + Y GVF + I P YPF+PP V F T IYHPNI++ G ICLDIL +
Sbjct: 39 IMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDIL----RSQ 94
Query: 61 WQPSLNISTVLTSIGLLLSEPNPDDGLMCEASQEYKYNRQAFDLKARSMTEKYA 114
W P+L IS VL SI LL +PNPDD L+ E ++ YK +R+ ++ AR T+KYA
Sbjct: 95 WSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKYA 148
>pdb|1QCQ|A Chain A, Ubiquitin Conjugating Enzyme
Length = 148
Score = 114 bits (285), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 56/114 (49%), Positives = 72/114 (63%), Gaps = 4/114 (3%)
Query: 1 IEGPEGTVYAKGVFEVKIQIPERYPFQPPSVTFATPIYHPNIDNGGRICLDILNLPPKGA 60
I GP + YA GVF + I P YPF+PP ++F T IYHPNI+ G ICLDIL K
Sbjct: 38 IMGPADSPYAGGVFFLSIHFPTDYPFKPPKISFTTKIYHPNINANGNICLDIL----KDQ 93
Query: 61 WQPSLNISTVLTSIGLLLSEPNPDDGLMCEASQEYKYNRQAFDLKARSMTEKYA 114
W P+L +S VL SI LL++ NPDD L+ E + YK +R ++ AR T+KYA
Sbjct: 94 WSPALTLSKVLLSICSLLTDANPDDPLVPEIAHIYKTDRPKYEATAREWTKKYA 147
>pdb|2ESQ|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ser94gly
Length = 149
Score = 114 bits (285), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 57/114 (50%), Positives = 73/114 (64%), Gaps = 4/114 (3%)
Query: 1 IEGPEGTVYAKGVFEVKIQIPERYPFQPPSVTFATPIYHPNIDNGGRICLDILNLPPKGA 60
I GP + Y GVF + I P YPF+PP V F T IYHPNI++ G ICLDIL +
Sbjct: 39 IMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDIL----RSQ 94
Query: 61 WQPSLNISTVLTSIGLLLSEPNPDDGLMCEASQEYKYNRQAFDLKARSMTEKYA 114
W P+L IS VL SI LL +PNPDD L+ E ++ YK +R+ ++ AR T+KYA
Sbjct: 95 WGPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKYA 148
>pdb|3OJ4|A Chain A, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a
Complex
pdb|3OJ4|D Chain D, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a
Complex
pdb|3PTF|A Chain A, X-Ray Structure Of The Non-Covalent Complex Between Ubch5a
And Ubiquitin
pdb|3PTF|B Chain B, X-Ray Structure Of The Non-Covalent Complex Between Ubch5a
And Ubiquitin
Length = 153
Score = 114 bits (285), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 53/114 (46%), Positives = 73/114 (64%), Gaps = 4/114 (3%)
Query: 1 IEGPEGTVYAKGVFEVKIQIPERYPFQPPSVTFATPIYHPNIDNGGRICLDILNLPPKGA 60
I GP + Y GVF + + P YPF+PP + F T IYHPNI++ G ICLDIL +
Sbjct: 43 IMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINSNGSICLDIL----RSQ 98
Query: 61 WQPSLNISTVLTSIGLLLSEPNPDDGLMCEASQEYKYNRQAFDLKARSMTEKYA 114
W P+L +S VL SI LL +PNPDD L+ + +Q YK +++ ++ AR T+KYA
Sbjct: 99 WSPALTVSKVLLSICSLLCDPNPDDPLVPDIAQIYKSDKEKYNRHAREWTQKYA 152
>pdb|2YHO|B Chain B, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|D Chain D, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|F Chain F, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|H Chain H, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
Length = 149
Score = 114 bits (284), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 53/114 (46%), Positives = 73/114 (64%), Gaps = 4/114 (3%)
Query: 1 IEGPEGTVYAKGVFEVKIQIPERYPFQPPSVTFATPIYHPNIDNGGRICLDILNLPPKGA 60
I GP + Y GVF + + P YPF+PP + F T IYHPNI++ G ICLDIL +
Sbjct: 39 IMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINSNGSICLDIL----RSQ 94
Query: 61 WQPSLNISTVLTSIGLLLSEPNPDDGLMCEASQEYKYNRQAFDLKARSMTEKYA 114
W P+L +S VL SI LL +PNPDD L+ + +Q YK +++ ++ AR T+KYA
Sbjct: 95 WSPALTVSKVLLSICSLLCDPNPDDPLVPDIAQIYKSDKEKYNRHAREWTQKYA 148
>pdb|2C4P|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5a
pdb|2C4P|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5a
Length = 165
Score = 114 bits (284), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 53/114 (46%), Positives = 73/114 (64%), Gaps = 4/114 (3%)
Query: 1 IEGPEGTVYAKGVFEVKIQIPERYPFQPPSVTFATPIYHPNIDNGGRICLDILNLPPKGA 60
I GP + Y GVF + + P YPF+PP + F T IYHPNI++ G ICLDIL +
Sbjct: 55 IMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINSNGSICLDIL----RSQ 110
Query: 61 WQPSLNISTVLTSIGLLLSEPNPDDGLMCEASQEYKYNRQAFDLKARSMTEKYA 114
W P+L +S VL SI LL +PNPDD L+ + +Q YK +++ ++ AR T+KYA
Sbjct: 111 WSPALTVSKVLLSICSLLCDPNPDDPLVPDIAQIYKSDKEKYNRHAREWTQKYA 164
>pdb|1Z2U|A Chain A, The 1.1a Crystallographic Structure Of Ubiquitin-
Conjugating Enzyme (Ubc-2) From Caenorhabditis Elegans:
Functional And Evolutionary Significance
Length = 150
Score = 114 bits (284), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 57/114 (50%), Positives = 73/114 (64%), Gaps = 4/114 (3%)
Query: 1 IEGPEGTVYAKGVFEVKIQIPERYPFQPPSVTFATPIYHPNIDNGGRICLDILNLPPKGA 60
I GP + Y GVF + I P YPF+PP V F T IYHPNI++ G ICLDIL +
Sbjct: 40 IMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDIL----RSQ 95
Query: 61 WQPSLNISTVLTSIGLLLSEPNPDDGLMCEASQEYKYNRQAFDLKARSMTEKYA 114
W P+L IS VL SI LL +PNPDD L+ E ++ YK +R+ ++ AR T+KYA
Sbjct: 96 WSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRERYNQLAREWTQKYA 149
>pdb|3L1Y|A Chain A, Crystal Structure Of Human Ubc4 E2 Conjugating Enzyme
Length = 157
Score = 114 bits (284), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 56/114 (49%), Positives = 73/114 (64%), Gaps = 4/114 (3%)
Query: 1 IEGPEGTVYAKGVFEVKIQIPERYPFQPPSVTFATPIYHPNIDNGGRICLDILNLPPKGA 60
I GP + Y GVF + I P YPF+PP V F T IYHPNI++ G ICLDIL +
Sbjct: 47 IMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDIL----RSQ 102
Query: 61 WQPSLNISTVLTSIGLLLSEPNPDDGLMCEASQEYKYNRQAFDLKARSMTEKYA 114
W P+L IS VL SI LL +PNPDD L+ E ++ Y+ +R+ ++ AR T+KYA
Sbjct: 103 WSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYQTDREKYNRIAREWTQKYA 156
>pdb|2ESO|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ile37ala
Length = 149
Score = 114 bits (284), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 56/112 (50%), Positives = 72/112 (64%), Gaps = 4/112 (3%)
Query: 3 GPEGTVYAKGVFEVKIQIPERYPFQPPSVTFATPIYHPNIDNGGRICLDILNLPPKGAWQ 62
GP + Y GVF + I P YPF+PP V F T IYHPNI++ G ICLDIL + W
Sbjct: 41 GPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDIL----RSQWS 96
Query: 63 PSLNISTVLTSIGLLLSEPNPDDGLMCEASQEYKYNRQAFDLKARSMTEKYA 114
P+L IS VL SI LL +PNPDD L+ E ++ YK +R+ ++ AR T+KYA
Sbjct: 97 PALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKYA 148
>pdb|3L1Z|A Chain A, Crystal Structure Of The U-Box Domain Of Human E4b
Ubiquitin Ligase In Complex With Ubch5c E2 Ubiquitin
Conjugating Enzyme
Length = 157
Score = 113 bits (283), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 56/114 (49%), Positives = 72/114 (63%), Gaps = 4/114 (3%)
Query: 1 IEGPEGTVYAKGVFEVKIQIPERYPFQPPSVTFATPIYHPNIDNGGRICLDILNLPPKGA 60
I GP + Y GVF + I P YPF+PP V F T IYHPNI++ G ICLDIL +
Sbjct: 47 IMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDIL----RSQ 102
Query: 61 WQPSLNISTVLTSIGLLLSEPNPDDGLMCEASQEYKYNRQAFDLKARSMTEKYA 114
W P+L IS VL SI LL +PNPDD L+ E ++ YK +R ++ +R T+KYA
Sbjct: 103 WSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISREWTQKYA 156
>pdb|4DDG|A Chain A, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|B Chain B, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|C Chain C, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|J Chain J, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|K Chain K, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|L Chain L, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|A Chain A, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|B Chain B, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|C Chain C, Crystal Structure Of Human Otub1UBCH5B~UBUB
Length = 399
Score = 113 bits (282), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 59/121 (48%), Positives = 76/121 (62%), Gaps = 7/121 (5%)
Query: 1 IEGPEGTVYAKGVFEVKIQIPERYPFQPPSVTFATPIYHPNIDNGGRICLDILNLPPKGA 60
I GP + Y GVF + I P YPF+PP V F T IYHPNI++ G I LDIL +
Sbjct: 39 IMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSISLDIL----RSQ 94
Query: 61 WQPSLNISTVLTSIGLLLSEPNPDDGLMCEASQEYKYNRQAFDLKARSMTEKYAKTGIGG 120
W P+L IS VL SI LL +PNPDD L+ E ++ YK +R+ ++ AR T+KYA +GG
Sbjct: 95 WSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKYA---MGG 151
Query: 121 S 121
S
Sbjct: 152 S 152
>pdb|2FUH|A Chain A, Solution Structure Of The Ubch5cUB NON-Covalent Complex
Length = 146
Score = 113 bits (282), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 56/114 (49%), Positives = 72/114 (63%), Gaps = 4/114 (3%)
Query: 1 IEGPEGTVYAKGVFEVKIQIPERYPFQPPSVTFATPIYHPNIDNGGRICLDILNLPPKGA 60
I GP + Y GVF + I P YPF+PP V F T IYHPNI++ G ICLDIL +
Sbjct: 36 IMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDIL----RSQ 91
Query: 61 WQPSLNISTVLTSIGLLLSEPNPDDGLMCEASQEYKYNRQAFDLKARSMTEKYA 114
W P+L IS VL SI LL +PNPDD L+ E ++ YK +R ++ +R T+KYA
Sbjct: 92 WSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISREWTQKYA 145
>pdb|3RPG|A Chain A, Bmi1RING1B-Ubch5c Complex Structure
Length = 149
Score = 113 bits (282), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 56/114 (49%), Positives = 72/114 (63%), Gaps = 4/114 (3%)
Query: 1 IEGPEGTVYAKGVFEVKIQIPERYPFQPPSVTFATPIYHPNIDNGGRICLDILNLPPKGA 60
I GP + Y GVF + I P YPF+PP V F T IYHPNI++ G ICLDIL +
Sbjct: 39 IMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDIL----RSQ 94
Query: 61 WQPSLNISTVLTSIGLLLSEPNPDDGLMCEASQEYKYNRQAFDLKARSMTEKYA 114
W P+L IS VL SI LL +PNPDD L+ E ++ YK +R ++ +R T+KYA
Sbjct: 95 WSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISREWTQKYA 148
>pdb|2ESP|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ile88ala
Length = 149
Score = 112 bits (281), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 56/114 (49%), Positives = 72/114 (63%), Gaps = 4/114 (3%)
Query: 1 IEGPEGTVYAKGVFEVKIQIPERYPFQPPSVTFATPIYHPNIDNGGRICLDILNLPPKGA 60
I GP + Y GVF + I P YPF+PP V F T IYHPNI++ G ICLD L +
Sbjct: 39 IMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDAL----RSQ 94
Query: 61 WQPSLNISTVLTSIGLLLSEPNPDDGLMCEASQEYKYNRQAFDLKARSMTEKYA 114
W P+L IS VL SI LL +PNPDD L+ E ++ YK +R+ ++ AR T+KYA
Sbjct: 95 WSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKYA 148
>pdb|1X23|A Chain A, Crystal Structure Of Ubch5c
pdb|1X23|B Chain B, Crystal Structure Of Ubch5c
pdb|1X23|C Chain C, Crystal Structure Of Ubch5c
pdb|1X23|D Chain D, Crystal Structure Of Ubch5c
Length = 155
Score = 112 bits (280), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 56/114 (49%), Positives = 72/114 (63%), Gaps = 4/114 (3%)
Query: 1 IEGPEGTVYAKGVFEVKIQIPERYPFQPPSVTFATPIYHPNIDNGGRICLDILNLPPKGA 60
I GP + Y GVF + I P YPF+PP V F T IYHPNI++ G ICLDIL +
Sbjct: 45 IMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDIL----RSQ 100
Query: 61 WQPSLNISTVLTSIGLLLSEPNPDDGLMCEASQEYKYNRQAFDLKARSMTEKYA 114
W P+L IS VL SI LL +PNPDD L+ E ++ YK +R ++ +R T+KYA
Sbjct: 101 WSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISREWTQKYA 154
>pdb|2OXQ|A Chain A, Structure Of The Ubch5 :chip U-Box Complex
pdb|2OXQ|B Chain B, Structure Of The Ubch5 :chip U-Box Complex
Length = 152
Score = 112 bits (279), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 54/114 (47%), Positives = 72/114 (63%), Gaps = 4/114 (3%)
Query: 1 IEGPEGTVYAKGVFEVKIQIPERYPFQPPSVTFATPIYHPNIDNGGRICLDILNLPPKGA 60
I GP + Y GVF + I P YPF+PP V F T IYHPNI++ G ICLDIL +
Sbjct: 42 IMGPSDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTKIYHPNINSNGSICLDIL----RSQ 97
Query: 61 WQPSLNISTVLTSIGLLLSEPNPDDGLMCEASQEYKYNRQAFDLKARSMTEKYA 114
W P+L +S VL SI LL +PNPDD L+ + + YK +++ ++ AR T+KYA
Sbjct: 98 WSPALTVSKVLLSICSLLCDPNPDDPLVPDIAHIYKSDKEKYNRLAREWTQKYA 151
>pdb|2GMI|A Chain A, Mms2UBC13~UBIQUITIN
Length = 152
Score = 111 bits (278), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 55/115 (47%), Positives = 73/115 (63%), Gaps = 4/115 (3%)
Query: 1 IEGPEGTVYAKGVFEVKIQIPERYPFQPPSVTFATPIYHPNIDNGGRICLDILNLPPKGA 60
IEGPE + Y G+FE+++ +P+ YP + P V F T IYHPNID GRI LD+L K
Sbjct: 39 IEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNIDRLGRISLDVL----KTN 94
Query: 61 WQPSLNISTVLTSIGLLLSEPNPDDGLMCEASQEYKYNRQAFDLKARSMTEKYAK 115
W P+L I TVL SI LL+ PNP+D L + ++++ N Q KAR T+ YAK
Sbjct: 95 WSPALQIRTVLLSIQALLASPNPNDPLANDVAEDWIKNEQGAKAKAREWTKLYAK 149
>pdb|3A33|A Chain A, Ubch5b~ubiquitin Conjugate
Length = 150
Score = 111 bits (277), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 56/114 (49%), Positives = 72/114 (63%), Gaps = 4/114 (3%)
Query: 1 IEGPEGTVYAKGVFEVKIQIPERYPFQPPSVTFATPIYHPNIDNGGRICLDILNLPPKGA 60
I GP + Y GVF + I P YPF+PP V F T IYHPNI++ G I LDIL +
Sbjct: 40 IMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSISLDIL----RSQ 95
Query: 61 WQPSLNISTVLTSIGLLLSEPNPDDGLMCEASQEYKYNRQAFDLKARSMTEKYA 114
W P+L IS VL SI LL +PNPDD L+ E ++ YK +R+ ++ AR T+KYA
Sbjct: 96 WSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKYA 149
>pdb|3JVZ|A Chain A, E2~ubiquitin-Hect
pdb|3JVZ|B Chain B, E2~ubiquitin-Hect
pdb|3JW0|A Chain A, E2~ubiquitin-Hect
pdb|3JW0|B Chain B, E2~ubiquitin-Hect
Length = 146
Score = 111 bits (277), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 56/114 (49%), Positives = 72/114 (63%), Gaps = 4/114 (3%)
Query: 1 IEGPEGTVYAKGVFEVKIQIPERYPFQPPSVTFATPIYHPNIDNGGRICLDILNLPPKGA 60
I GP + Y GVF + I P YPF+PP V F T IYHPNI++ G I LDIL +
Sbjct: 36 IMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSISLDIL----RSQ 91
Query: 61 WQPSLNISTVLTSIGLLLSEPNPDDGLMCEASQEYKYNRQAFDLKARSMTEKYA 114
W P+L IS VL SI LL +PNPDD L+ E ++ YK +R+ ++ AR T+KYA
Sbjct: 92 WSPALKISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKYA 145
>pdb|2C4O|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
Length = 165
Score = 110 bits (276), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 56/114 (49%), Positives = 72/114 (63%), Gaps = 4/114 (3%)
Query: 1 IEGPEGTVYAKGVFEVKIQIPERYPFQPPSVTFATPIYHPNIDNGGRICLDILNLPPKGA 60
I GP + Y GVF + I P YPF+PP V F T IYHPNI++ G I LDIL +
Sbjct: 55 IMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSIXLDIL----RSQ 110
Query: 61 WQPSLNISTVLTSIGLLLSEPNPDDGLMCEASQEYKYNRQAFDLKARSMTEKYA 114
W P+L IS VL SI LL +PNPDD L+ E ++ YK +R+ ++ AR T+KYA
Sbjct: 111 WSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKYA 164
>pdb|3E95|A Chain A, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
pdb|3E95|B Chain B, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
Length = 151
Score = 109 bits (273), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 54/118 (45%), Positives = 73/118 (61%), Gaps = 4/118 (3%)
Query: 1 IEGPEGTVYAKGVFEVKIQIPERYPFQPPSVTFATPIYHPNIDNGGRICLDILNLPPKGA 60
I GP+GT Y G +++++ +PE+YP +PP V F T IYHPNID GRICLDIL K
Sbjct: 37 INGPDGTPYEGGTYKLELFLPEQYPMEPPKVRFLTKIYHPNIDKLGRICLDIL----KDK 92
Query: 61 WQPSLNISTVLTSIGLLLSEPNPDDGLMCEASQEYKYNRQAFDLKARSMTEKYAKTGI 118
W P+L I TVL SI LLS P PDD L + ++ +K ++ + AR + YA +
Sbjct: 93 WSPALQIRTVLLSIQALLSSPEPDDPLDSKVAEHFKQDKNDAEHVARQWNKIYANNNV 150
>pdb|2R0J|A Chain A, Crystal Structure Of The Putative Ubiquitin Conjugating
Enzyme, Pfe1350c, From Plasmodium Falciparum
Length = 149
Score = 109 bits (272), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 54/114 (47%), Positives = 72/114 (63%), Gaps = 4/114 (3%)
Query: 1 IEGPEGTVYAKGVFEVKIQIPERYPFQPPSVTFATPIYHPNIDNGGRICLDILNLPPKGA 60
I GP+GT Y G +++++ +PE+YP +PP V F T IYHPNID GRICLDIL K
Sbjct: 37 INGPDGTPYEGGTYKLELFLPEQYPMEPPKVRFLTKIYHPNIDKLGRICLDIL----KDK 92
Query: 61 WQPSLNISTVLTSIGLLLSEPNPDDGLMCEASQEYKYNRQAFDLKARSMTEKYA 114
W P+L I TVL SI LLS P PDD L + ++ +K ++ + AR + YA
Sbjct: 93 WSPALQIRTVLLSIQALLSSPEPDDPLDSKVAEHFKQDKNDAEHVARQWNKIYA 146
>pdb|3UGB|A Chain A, Ubch5c~ubiquitin Conjugate
Length = 147
Score = 109 bits (272), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 55/114 (48%), Positives = 71/114 (62%), Gaps = 4/114 (3%)
Query: 1 IEGPEGTVYAKGVFEVKIQIPERYPFQPPSVTFATPIYHPNIDNGGRICLDILNLPPKGA 60
I GP + Y GVF + I P YPF+PP V F T IYHPNI++ G I LDIL +
Sbjct: 37 IMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSISLDIL----RSQ 92
Query: 61 WQPSLNISTVLTSIGLLLSEPNPDDGLMCEASQEYKYNRQAFDLKARSMTEKYA 114
W P+L IS VL SI LL +PNPDD L+ E ++ YK +R ++ +R T+KYA
Sbjct: 93 WSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISREWTQKYA 146
>pdb|4AP4|B Chain B, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
pdb|4AP4|E Chain E, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
Length = 153
Score = 108 bits (271), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 52/114 (45%), Positives = 72/114 (63%), Gaps = 4/114 (3%)
Query: 1 IEGPEGTVYAKGVFEVKIQIPERYPFQPPSVTFATPIYHPNIDNGGRICLDILNLPPKGA 60
I GP + Y GVF + + P YPF+PP + F T IYHPNI++ G I LDIL +
Sbjct: 43 IMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINSNGSIKLDIL----RSQ 98
Query: 61 WQPSLNISTVLTSIGLLLSEPNPDDGLMCEASQEYKYNRQAFDLKARSMTEKYA 114
W P+L +S VL SI LL +PNPDD L+ + +Q YK +++ ++ AR T+KYA
Sbjct: 99 WSPALTVSKVLLSICSLLCDPNPDDPLVPDIAQIYKSDKEKYNRHAREWTQKYA 152
>pdb|4FH1|A Chain A, S. Cerevisiae Ubc13-N79a
Length = 153
Score = 108 bits (271), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 54/115 (46%), Positives = 72/115 (62%), Gaps = 4/115 (3%)
Query: 1 IEGPEGTVYAKGVFEVKIQIPERYPFQPPSVTFATPIYHPNIDNGGRICLDILNLPPKGA 60
IEGPE + Y G+FE+++ +P+ YP + P V F T IYHP ID GRI LD+L K
Sbjct: 39 IEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPAIDRLGRISLDVL----KTN 94
Query: 61 WQPSLNISTVLTSIGLLLSEPNPDDGLMCEASQEYKYNRQAFDLKARSMTEKYAK 115
W P+L I TVL SI LL+ PNP+D L + ++++ N Q KAR T+ YAK
Sbjct: 95 WSPALQIRTVLLSIQALLASPNPNDPLANDVAEDWIKNEQGAKAKAREWTKLYAK 149
>pdb|4AUQ|A Chain A, Structure Of Birc7-Ubch5b-Ub Complex.
pdb|4AUQ|D Chain D, Structure Of Birc7-Ubch5b-Ub Complex
Length = 147
Score = 108 bits (269), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 55/114 (48%), Positives = 71/114 (62%), Gaps = 4/114 (3%)
Query: 1 IEGPEGTVYAKGVFEVKIQIPERYPFQPPSVTFATPIYHPNIDNGGRICLDILNLPPKGA 60
I GP + Y GVF + I P YPF+PP V F T IYHP I++ G I LDIL +
Sbjct: 37 IMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPAINSNGSISLDIL----RSQ 92
Query: 61 WQPSLNISTVLTSIGLLLSEPNPDDGLMCEASQEYKYNRQAFDLKARSMTEKYA 114
W P+L IS VL SI LL +PNPDD L+ E ++ YK +R+ ++ AR T+KYA
Sbjct: 93 WSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKYA 146
>pdb|2C2V|B Chain B, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|E Chain E, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|H Chain H, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|K Chain K, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
Length = 154
Score = 107 bits (266), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 54/118 (45%), Positives = 70/118 (59%), Gaps = 4/118 (3%)
Query: 1 IEGPEGTVYAKGVFEVKIQIPERYPFQPPSVTFATPIYHPNIDNGGRICLDILNLPPKGA 60
I GP+ + + G F++++ +PE YP P V F T IYHPN+D GRICLDIL K
Sbjct: 41 IAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDIL----KDK 96
Query: 61 WQPSLNISTVLTSIGLLLSEPNPDDGLMCEASQEYKYNRQAFDLKARSMTEKYAKTGI 118
W P+L I TVL SI LLS PNPDD L + ++++K N AR+ T YA I
Sbjct: 97 WSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLYAMNNI 154
>pdb|3HCT|B Chain B, Crystal Structure Of Traf6 In Complex With Ubc13 In The P1
Space Group
pdb|3HCU|B Chain B, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
pdb|3HCU|D Chain D, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
Length = 155
Score = 107 bits (266), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 54/118 (45%), Positives = 70/118 (59%), Gaps = 4/118 (3%)
Query: 1 IEGPEGTVYAKGVFEVKIQIPERYPFQPPSVTFATPIYHPNIDNGGRICLDILNLPPKGA 60
I GP+ + + G F++++ +PE YP P V F T IYHPN+D GRICLDIL K
Sbjct: 42 IAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDIL----KDK 97
Query: 61 WQPSLNISTVLTSIGLLLSEPNPDDGLMCEASQEYKYNRQAFDLKARSMTEKYAKTGI 118
W P+L I TVL SI LLS PNPDD L + ++++K N AR+ T YA I
Sbjct: 98 WSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLYAMNNI 155
>pdb|1J7D|B Chain B, Crystal Structure Of Hmms2-Hubc13
pdb|4DHI|D Chain D, Structure Of C. Elegans Otub1 Bound To Human Ubc13
pdb|4DHJ|C Chain C, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|K Chain K, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|G Chain G, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|N Chain N, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHZ|F Chain F, The Structure Of HCEOTUB1-Ubiquitin Aldehyde-Ubc13~ub
Length = 152
Score = 107 bits (266), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 54/118 (45%), Positives = 70/118 (59%), Gaps = 4/118 (3%)
Query: 1 IEGPEGTVYAKGVFEVKIQIPERYPFQPPSVTFATPIYHPNIDNGGRICLDILNLPPKGA 60
I GP+ + + G F++++ +PE YP P V F T IYHPN+D GRICLDIL K
Sbjct: 39 IAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDIL----KDK 94
Query: 61 WQPSLNISTVLTSIGLLLSEPNPDDGLMCEASQEYKYNRQAFDLKARSMTEKYAKTGI 118
W P+L I TVL SI LLS PNPDD L + ++++K N AR+ T YA I
Sbjct: 95 WSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLYAMNNI 152
>pdb|3VON|C Chain C, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|E Chain E, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|G Chain G, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|J Chain J, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|L Chain L, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|N Chain N, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Q Chain Q, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|S Chain S, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|U Chain U, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|X Chain X, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Z Chain Z, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|BB Chain b, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|EE Chain e, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|GG Chain g, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|II Chain i, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|LL Chain l, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|NN Chain n, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|PP Chain p, Crystalstructure Of The Ubiquitin Protease
Length = 148
Score = 106 bits (264), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 53/114 (46%), Positives = 69/114 (60%), Gaps = 4/114 (3%)
Query: 1 IEGPEGTVYAKGVFEVKIQIPERYPFQPPSVTFATPIYHPNIDNGGRICLDILNLPPKGA 60
I GP+ + + G F++++ +PE YP P V F T IYHPN+D GRICLDIL K
Sbjct: 37 IAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDIL----KDK 92
Query: 61 WQPSLNISTVLTSIGLLLSEPNPDDGLMCEASQEYKYNRQAFDLKARSMTEKYA 114
W P+L I TVL SI LLS PNPDD L + ++++K N AR+ T YA
Sbjct: 93 WSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLYA 146
>pdb|4EPO|B Chain B, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|F Chain F, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|J Chain J, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 155
Score = 105 bits (263), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 53/114 (46%), Positives = 69/114 (60%), Gaps = 4/114 (3%)
Query: 1 IEGPEGTVYAKGVFEVKIQIPERYPFQPPSVTFATPIYHPNIDNGGRICLDILNLPPKGA 60
I GP+ + + G F++++ +PE YP P V F T IYHPN+D GRICLDIL K
Sbjct: 44 IAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDIL----KDK 99
Query: 61 WQPSLNISTVLTSIGLLLSEPNPDDGLMCEASQEYKYNRQAFDLKARSMTEKYA 114
W P+L I TVL SI LLS PNPDD L + ++++K N AR+ T YA
Sbjct: 100 WSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLYA 153
>pdb|3BZH|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme E2
E1
Length = 194
Score = 105 bits (263), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 56/114 (49%), Positives = 69/114 (60%), Gaps = 4/114 (3%)
Query: 1 IEGPEGTVYAKGVFEVKIQIPERYPFQPPSVTFATPIYHPNIDNGGRICLDILNLPPKGA 60
I GP G+VY GVF + I YPF+PP VTF T IYH NI++ G ICLDIL K
Sbjct: 84 ILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTRIYHCNINSQGVICLDIL----KDN 139
Query: 61 WQPSLNISTVLTSIGLLLSEPNPDDGLMCEASQEYKYNRQAFDLKARSMTEKYA 114
W P+L IS VL SI LL++ NP D L+ + +Y NR D AR T++YA
Sbjct: 140 WSPALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNRAEHDRMARQWTKRYA 193
>pdb|4GPR|A Chain A, Crystal Structure Of Ehubc5, A Ubiquitin Conjugating
Enzyme From Entamoeba Histolytica
Length = 151
Score = 104 bits (259), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 51/115 (44%), Positives = 69/115 (60%), Gaps = 4/115 (3%)
Query: 1 IEGPEGTVYAKGVFEVKIQIPERYPFQPPSVTFATPIYHPNIDNGGRICLDILNLPPKGA 60
I GP+ + Y G+F + + P YPF+ P VTF T +YHPNI+ G ICLDIL K
Sbjct: 40 ITGPDDSPYQGGLFFLDVHFPVDYPFKAPRVTFMTKVYHPNINKNGVICLDIL----KDQ 95
Query: 61 WQPSLNISTVLTSIGLLLSEPNPDDGLMCEASQEYKYNRQAFDLKARSMTEKYAK 115
W P+L +S VL SI LL++PNP D L E + + N++ F+ AR T YA+
Sbjct: 96 WSPALTLSRVLLSISSLLTDPNPSDPLDPEVANVLRANKKQFEDTAREWTRMYAR 150
>pdb|1Y6L|A Chain A, Human Ubiquitin Conjugating Enzyme E2e2
pdb|1Y6L|B Chain B, Human Ubiquitin Conjugating Enzyme E2e2
pdb|1Y6L|C Chain C, Human Ubiquitin Conjugating Enzyme E2e2
Length = 149
Score = 103 bits (257), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 56/114 (49%), Positives = 69/114 (60%), Gaps = 4/114 (3%)
Query: 1 IEGPEGTVYAKGVFEVKIQIPERYPFQPPSVTFATPIYHPNIDNGGRICLDILNLPPKGA 60
I GP G+VY GVF + I YPF+PP VTF T IYH NI++ G ICLDIL K
Sbjct: 39 ILGPPGSVYEGGVFFLDITFSPDYPFKPPKVTFRTRIYHCNINSQGVICLDIL----KDN 94
Query: 61 WQPSLNISTVLTSIGLLLSEPNPDDGLMCEASQEYKYNRQAFDLKARSMTEKYA 114
W P+L IS VL SI LL++ NP D L+ + +Y NR D AR T++YA
Sbjct: 95 WSPALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNRAEHDRMARQWTKRYA 148
>pdb|2PWQ|A Chain A, Crystal Structure Of A Putative Ubiquitin Conjugating
Enzyme From Plasmodium Yoelii
Length = 216
Score = 101 bits (252), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 53/115 (46%), Positives = 66/115 (57%), Gaps = 5/115 (4%)
Query: 1 IEGPEGTVYAKGVFEVKIQIPERYPFQPPSVTFATPIYHPNIDN-GGRICLDILNLPPKG 59
I+GPEGT Y G F + I IP YP+ PP + F T I+HPNI + G ICLD+L K
Sbjct: 59 IKGPEGTPYEGGHFTLAITIPNDYPYNPPKIKFVTKIWHPNISSQTGAICLDVL----KN 114
Query: 60 AWQPSLNISTVLTSIGLLLSEPNPDDGLMCEASQEYKYNRQAFDLKARSMTEKYA 114
W P+L I T L SI LLS+P PDD E ++ YK N F A T+ +A
Sbjct: 115 EWSPALTIRTALLSIQALLSDPQPDDPQDAEVAKMYKENHALFVKTASVWTKTFA 169
>pdb|1JAS|A Chain A, Hsubc2b
pdb|2YB6|A Chain A, Native Human Rad6
pdb|2YBF|A Chain A, Complex Of Rad18 (Rad6 Binding Domain) With Rad6b
pdb|2Y4W|A Chain A, Solution Structure Of Human Ubiquitin Conjugating Enzyme
Rad6b
Length = 152
Score = 96.3 bits (238), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 44/112 (39%), Positives = 72/112 (64%), Gaps = 4/112 (3%)
Query: 1 IEGPEGTVYAKGVFEVKIQIPERYPFQPPSVTFATPIYHPNIDNGGRICLDILNLPPKGA 60
I GPEGT + G F++ I+ E YP +PP+V F + ++HPN+ G ICLDIL +
Sbjct: 40 IFGPEGTPFEDGTFKLVIEFSEEYPNKPPTVRFLSKMFHPNVYADGSICLDIL----QNR 95
Query: 61 WQPSLNISTVLTSIGLLLSEPNPDDGLMCEASQEYKYNRQAFDLKARSMTEK 112
W P+ ++S++LTSI LL EPNP+ +A+Q Y+ N++ ++ + ++ E+
Sbjct: 96 WSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYEKRVSAIVEQ 147
>pdb|1TTE|A Chain A, The Structure Of A Class Ii Ubiquitin-Conjugating Enzyme,
Ubc1
Length = 215
Score = 96.3 bits (238), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 48/113 (42%), Positives = 65/113 (57%), Gaps = 5/113 (4%)
Query: 3 GPEGTVYAKGVFEVKIQIPERYPFQPPSVTFATPIYHPNIDN-GGRICLDILNLPPKGAW 61
GP GT Y G F V I++P YPF+PP + F T +YHPNI + G ICLDIL + AW
Sbjct: 41 GPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNISSVTGAICLDIL----RNAW 96
Query: 62 QPSLNISTVLTSIGLLLSEPNPDDGLMCEASQEYKYNRQAFDLKARSMTEKYA 114
P + + + L S+ LL P P+D E +Q Y +R++F+ A T YA
Sbjct: 97 SPVITLKSALISLQALLQSPEPNDPQDAEVAQHYLRDRESFNKTAALWTRLYA 149
>pdb|1FXT|A Chain A, Structure Of A Conjugating Enzyme-Ubiquitin Thiolester
Complex
pdb|1FZY|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Ubiquitin
Conjugating Enzyme 1
pdb|1FZY|B Chain B, Crystal Structure Of Saccharomyces Cerevisiae Ubiquitin
Conjugating Enzyme 1
Length = 149
Score = 95.9 bits (237), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 49/113 (43%), Positives = 65/113 (57%), Gaps = 5/113 (4%)
Query: 3 GPEGTVYAKGVFEVKIQIPERYPFQPPSVTFATPIYHPNIDN-GGRICLDILNLPPKGAW 61
GP GT Y G F V I++P YPF+PP + F T +YHPNI + G ICLDIL K AW
Sbjct: 40 GPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNISSVTGAICLDIL----KNAW 95
Query: 62 QPSLNISTVLTSIGLLLSEPNPDDGLMCEASQEYKYNRQAFDLKARSMTEKYA 114
P + + + L S+ LL P P+D E +Q Y +R++F+ A T YA
Sbjct: 96 SPVITLKSALISLQALLQSPEPNDPQDAEVAQHYLRDRESFNKTAALWTRLYA 148
>pdb|1C4Z|D Chain D, Structure Of E6ap: Insights Into Ubiquitination Pathway
pdb|1FBV|C Chain C, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function In
Ubiquitin-Protein Ligases
Length = 154
Score = 93.2 bits (230), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 41/110 (37%), Positives = 65/110 (59%), Gaps = 3/110 (2%)
Query: 4 PEGTVYAKGVFEVKIQIPERYPFQPPSVTFATPIYHPNIDNGGRICLDILNLPPKGAWQP 63
P+ Y KG F ++I P YPF+PP +TF T IYHPNID G++CL +++ W+P
Sbjct: 41 PDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDEKGQVCLPVISA---ENWKP 97
Query: 64 SLNISTVLTSIGLLLSEPNPDDGLMCEASQEYKYNRQAFDLKARSMTEKY 113
+ V+ S+ L+++P P+ L + ++EY +R+ F A T+KY
Sbjct: 98 ATKTDQVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKFCKNAEEFTKKY 147
>pdb|3SQV|C Chain C, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin Ligase,
Nlel, With A Human E2, Ubch7
pdb|3SQV|D Chain D, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin Ligase,
Nlel, With A Human E2, Ubch7
pdb|3SY2|C Chain C, Crystal Structure Of The Salmonella E3 Ubiquitin Ligase
Sopa In Complex With The Human E2 Ubch7
pdb|3SY2|D Chain D, Crystal Structure Of The Salmonella E3 Ubiquitin Ligase
Sopa In Complex With The Human E2 Ubch7
Length = 156
Score = 93.2 bits (230), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 41/111 (36%), Positives = 65/111 (58%), Gaps = 3/111 (2%)
Query: 4 PEGTVYAKGVFEVKIQIPERYPFQPPSVTFATPIYHPNIDNGGRICLDILNLPPKGAWQP 63
P+ Y KG F ++I P YPF+PP +TF T IYHPNID G++CL +++ W+P
Sbjct: 43 PDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDEKGQVCLPVISA---ENWKP 99
Query: 64 SLNISTVLTSIGLLLSEPNPDDGLMCEASQEYKYNRQAFDLKARSMTEKYA 114
+ V+ S+ L+++P P+ L + ++EY +R+ F A T+KY
Sbjct: 100 ATKTDQVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKFCKNAEEFTKKYG 150
>pdb|1Q34|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
pdb|1Q34|B Chain B, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
pdb|1Q34|C Chain C, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
Length = 163
Score = 89.4 bits (220), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 41/112 (36%), Positives = 69/112 (61%), Gaps = 4/112 (3%)
Query: 1 IEGPEGTVYAKGVFEVKIQIPERYPFQPPSVTFATPIYHPNIDNGGRICLDILNLPPKGA 60
I GP+ T + G F++ ++ E YP +PP+V F + ++HPN+ G ICLDIL +
Sbjct: 40 IFGPQETPFEDGTFKLSLEFTEEYPNKPPTVKFISKMFHPNVYADGSICLDIL----QNR 95
Query: 61 WQPSLNISTVLTSIGLLLSEPNPDDGLMCEASQEYKYNRQAFDLKARSMTEK 112
W P+ +++ +LTSI LL EPNP+ A+Q Y+ NR+ ++ + + + E+
Sbjct: 96 WSPTYDVAAILTSIQSLLDEPNPNSPANSLAAQLYQENRREYEKRVQQIVEQ 147
>pdb|1Z3D|A Chain A, Protein Crystal Growth Improvement Leading To The 2.5a
Crystallographic Structure Of Ubiquitin-Conjugating
Enzyme (Ubc-1) From Caenorhabditis Elegans
Length = 157
Score = 89.4 bits (220), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 41/112 (36%), Positives = 69/112 (61%), Gaps = 4/112 (3%)
Query: 1 IEGPEGTVYAKGVFEVKIQIPERYPFQPPSVTFATPIYHPNIDNGGRICLDILNLPPKGA 60
I GP+ T + G F++ ++ E YP +PP+V F + ++HPN+ G ICLDIL +
Sbjct: 43 IFGPQETPFEDGTFKLSLEFTEEYPNKPPTVKFISKMFHPNVYADGSICLDIL----QNR 98
Query: 61 WQPSLNISTVLTSIGLLLSEPNPDDGLMCEASQEYKYNRQAFDLKARSMTEK 112
W P+ +++ +LTSI LL EPNP+ A+Q Y+ NR+ ++ + + + E+
Sbjct: 99 WSPTYDVAAILTSIQSLLDEPNPNSPANSLAAQLYQENRREYEKRVQQIVEQ 150
>pdb|2F4Z|A Chain A, Toxoplasma Gondii Ubiquitin Conjugating Enzyme
Tgtwinscan_2721- E2 Domain
pdb|2F4Z|B Chain B, Toxoplasma Gondii Ubiquitin Conjugating Enzyme
Tgtwinscan_2721- E2 Domain
Length = 193
Score = 89.0 bits (219), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 50/116 (43%), Positives = 63/116 (54%), Gaps = 5/116 (4%)
Query: 1 IEGPEGTVYAKGVFEVKIQIPERYPFQPPSVTFATPIYHPNIDN-GGRICLDILNLPPKG 59
I GP GT Y G F + I IP YP+ PP + F T I+HPNI + G ICLDIL K
Sbjct: 81 IAGPLGTPYEGGHFTLDIVIPPDYPYNPPKMKFVTKIWHPNISSQTGAICLDIL----KH 136
Query: 60 AWQPSLNISTVLTSIGLLLSEPNPDDGLMCEASQEYKYNRQAFDLKARSMTEKYAK 115
W P+L I T L SI +L++P P D E ++ N F A+ TE +AK
Sbjct: 137 EWSPALTIRTALLSIQAMLADPVPTDPQDAEVAKMMIENHPLFVQTAKLWTETFAK 192
>pdb|2AAK|A Chain A, Ubiquitin Conjugating Enzyme From Arabidopsis Thaliana
Length = 152
Score = 87.4 bits (215), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 41/112 (36%), Positives = 68/112 (60%), Gaps = 4/112 (3%)
Query: 1 IEGPEGTVYAKGVFEVKIQIPERYPFQPPSVTFATPIYHPNIDNGGRICLDILNLPPKGA 60
I GP+ T + G F++ +Q E YP +PP+V F + ++HPNI G ICLDIL +
Sbjct: 40 IFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFHPNIYADGSICLDIL----QNQ 95
Query: 61 WQPSLNISTVLTSIGLLLSEPNPDDGLMCEASQEYKYNRQAFDLKARSMTEK 112
W P +++ +LTSI LL +PNP+ EA++ Y +++ ++ + R + E+
Sbjct: 96 WSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMYSESKREYNRRVRDVVEQ 147
>pdb|1ZDN|A Chain A, Ubiquitin-Conjugating Enzyme E2s
pdb|1ZDN|B Chain B, Ubiquitin-Conjugating Enzyme E2s
Length = 158
Score = 85.9 bits (211), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 45/111 (40%), Positives = 63/111 (56%), Gaps = 4/111 (3%)
Query: 1 IEGPEGTVYAKGVFEVKIQIPERYPFQPPSVTFATPIYHPNIDNGGRICLDILNLPPKGA 60
IEGPEGT YA G+F +K+ + + +P PP F T I+HPN+ G IC+++L K
Sbjct: 49 IEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLTKIFHPNVGANGEICVNVL----KRD 104
Query: 61 WQPSLNISTVLTSIGLLLSEPNPDDGLMCEASQEYKYNRQAFDLKARSMTE 111
W L I VL +I LL PNP+ L EA + N + + +AR +TE
Sbjct: 105 WTAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLENYEEYAARARLLTE 155
>pdb|2E2C|A Chain A, E2-C, An Ubiquitin Conjugating Enzyme Required For The
Destruction Of Mitotic Cyclins
Length = 156
Score = 84.0 bits (206), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 38/95 (40%), Positives = 57/95 (60%), Gaps = 4/95 (4%)
Query: 1 IEGPEGTVYAKGVFEVKIQIPERYPFQPPSVTFATPIYHPNIDNGGRICLDILNLPPKGA 60
++GP+ TVY +++ ++ P YP++PP V F TP +HPN+D G ICLDIL K
Sbjct: 45 LDGPKDTVYESLKYKLTLEFPSDYPYKPPVVKFTTPCWHPNVDQSGNICLDIL----KEN 100
Query: 61 WQPSLNISTVLTSIGLLLSEPNPDDGLMCEASQEY 95
W S ++ T+L S+ LL EPN L +A+ +
Sbjct: 101 WTASYDVRTILLSLQSLLGEPNNASPLNAQAADMW 135
>pdb|2Z5D|A Chain A, Human Ubiquitin-Conjugating Enzyme E2 H
pdb|2Z5D|B Chain B, Human Ubiquitin-Conjugating Enzyme E2 H
Length = 179
Score = 84.0 bits (206), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 41/114 (35%), Positives = 68/114 (59%), Gaps = 6/114 (5%)
Query: 3 GPEGTVYAKGVFEVKIQIPERYPFQPPSVTFATPIYHPNIDNG-GRICLDILNLPPKGAW 61
GP+GT Y GV++V++ +P++YPF+ PS+ F I+HPNID G +CLD++N W
Sbjct: 59 GPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMNKIFHPNIDEASGTVCLDVIN----QTW 114
Query: 62 QPSLNISTVLTS-IGLLLSEPNPDDGLMCEASQEYKYNRQAFDLKARSMTEKYA 114
+++ + S + LL+ PNP D L +A+ Y + + + K + +KYA
Sbjct: 115 TALYDLTNIFESFLPQLLAYPNPIDPLNGDAAAMYLHRPEEYKQKIKEYIQKYA 168
>pdb|1I7K|A Chain A, Crystal Structure Of Human Mitotic-Specific Ubiquitin-
Conjugating Enzyme, Ubch10
pdb|1I7K|B Chain B, Crystal Structure Of Human Mitotic-Specific Ubiquitin-
Conjugating Enzyme, Ubch10
Length = 179
Score = 82.0 bits (201), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 46/115 (40%), Positives = 63/115 (54%), Gaps = 8/115 (6%)
Query: 1 IEGPEGTVYAKGVFEVKIQIPERYPFQPPSVTFATPIYHPNIDNGGRICLDILNLPPKGA 60
I G GTVY +++ ++ P YP+ P+V F TP YHPN+D G I LDIL K
Sbjct: 66 IHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVDTQGNISLDIL----KEK 121
Query: 61 WQPSLNISTVLTSIGLLLSEPNPDDGLMCEASQEYKYNRQAFDLKARSMTEKYAK 115
W ++ T+L SI LL EPN D L A++ +K N AF + + E Y+K
Sbjct: 122 WSALYDVRTILLSIQSLLGEPNIDSPLNTHAAELWK-NPTAFK---KYLQETYSK 172
>pdb|3E46|A Chain A, Crystal Structure Of Ubiquitin-Conjugating Enzyme E2-25kda
(Huntington Interacting Protein 2) M172a Mutant
pdb|3F92|A Chain A, Crystal Structure Of Ubiquitin-Conjugating Enzyme E2-25kda
(Huntington Interacting Protein 2) M172a Mutant
Crystallized At Ph 8.5
Length = 253
Score = 82.0 bits (201), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 49/115 (42%), Positives = 64/115 (55%), Gaps = 5/115 (4%)
Query: 1 IEGPEGTVYAKGVFEVKIQIPERYPFQPPSVTFATPIYHPNIDN-GGRICLDILNLPPKG 59
I GP T Y G ++++I+IPE YPF PP V F T I+HPNI + G ICLDIL K
Sbjct: 96 IAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDIL----KD 151
Query: 60 AWQPSLNISTVLTSIGLLLSEPNPDDGLMCEASQEYKYNRQAFDLKARSMTEKYA 114
W ++ + TVL S+ LL+ PDD + +YK N + F AR YA
Sbjct: 152 QWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVYA 206
>pdb|3K9P|A Chain A, The Crystal Structure Of E2-25k And Ubiquitin Complex
Length = 217
Score = 81.6 bits (200), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 49/115 (42%), Positives = 64/115 (55%), Gaps = 5/115 (4%)
Query: 1 IEGPEGTVYAKGVFEVKIQIPERYPFQPPSVTFATPIYHPNIDN-GGRICLDILNLPPKG 59
I GP T Y G ++++I+IPE YPF PP V F T I+HPNI + G ICLDIL K
Sbjct: 60 IAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDIL----KD 115
Query: 60 AWQPSLNISTVLTSIGLLLSEPNPDDGLMCEASQEYKYNRQAFDLKARSMTEKYA 114
W ++ + TVL S+ LL+ PDD + +YK N + F AR YA
Sbjct: 116 QWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVYA 170
>pdb|1YLA|A Chain A, Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington
Interacting Protein 2)
pdb|1YLA|B Chain B, Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington
Interacting Protein 2)
pdb|2O25|A Chain A, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|2O25|B Chain B, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
Length = 202
Score = 81.6 bits (200), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 49/126 (38%), Positives = 68/126 (53%), Gaps = 5/126 (3%)
Query: 1 IEGPEGTVYAKGVFEVKIQIPERYPFQPPSVTFATPIYHPNIDN-GGRICLDILNLPPKG 59
I GP T Y G ++++I+IPE YPF PP V F T I+HPNI + G ICLDIL K
Sbjct: 45 IAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDIL----KD 100
Query: 60 AWQPSLNISTVLTSIGLLLSEPNPDDGLMCEASQEYKYNRQAFDLKARSMTEKYAKTGIG 119
W ++ + TVL S+ LL+ PDD + +YK N + F AR YA +
Sbjct: 101 QWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVYAGAPVS 160
Query: 120 GSQESR 125
+ ++
Sbjct: 161 SPEYTK 166
>pdb|3K9O|A Chain A, The Crystal Structure Of E2-25k And Ubb+1 Complex
Length = 201
Score = 81.6 bits (200), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 49/126 (38%), Positives = 68/126 (53%), Gaps = 5/126 (3%)
Query: 1 IEGPEGTVYAKGVFEVKIQIPERYPFQPPSVTFATPIYHPNIDN-GGRICLDILNLPPKG 59
I GP T Y G ++++I+IPE YPF PP V F T I+HPNI + G ICLDIL K
Sbjct: 44 IAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDIL----KD 99
Query: 60 AWQPSLNISTVLTSIGLLLSEPNPDDGLMCEASQEYKYNRQAFDLKARSMTEKYAKTGIG 119
W ++ + TVL S+ LL+ PDD + +YK N + F AR YA +
Sbjct: 100 QWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVYAGAPVS 159
Query: 120 GSQESR 125
+ ++
Sbjct: 160 SPEYTK 165
>pdb|1AYZ|A Chain A, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
pdb|1AYZ|B Chain B, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
pdb|1AYZ|C Chain C, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
Length = 169
Score = 81.3 bits (199), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 63/112 (56%), Gaps = 4/112 (3%)
Query: 1 IEGPEGTVYAKGVFEVKIQIPERYPFQPPSVTFATPIYHPNIDNGGRICLDILNLPPKGA 60
I GP T Y G F + ++ E YP +PP V F + ++HPN+ G ICLDIL +
Sbjct: 40 IIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEMFHPNVYANGEICLDIL----QNR 95
Query: 61 WQPSLNISTVLTSIGLLLSEPNPDDGLMCEASQEYKYNRQAFDLKARSMTEK 112
W P+ +++++LTSI L ++PNP EA+ +K ++ + + + EK
Sbjct: 96 WTPTYDVASILTSIQSLFNDPNPASPANVEAATLFKDHKSQYVKRVKETVEK 147
>pdb|2AWF|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G1
Length = 172
Score = 81.3 bits (199), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 62/110 (56%), Gaps = 9/110 (8%)
Query: 1 IEGPEGTVYAKGVFEVKIQIPERYPFQPPSVTFATPIYHPNIDNGGRICLDILNLP---- 56
I GP T+Y GVF+ + P+ YP +PP + F T I+HPN+D G +C+ IL+ P
Sbjct: 54 IIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNVDKNGDVCISILHEPGEDK 113
Query: 57 -----PKGAWQPSLNISTVLTSIGLLLSEPNPDDGLMCEASQEYKYNRQA 101
P+ W P + T++ S+ +L++PN D +A++E++ +R
Sbjct: 114 YGYEKPEERWLPIHTVETIMISVISMLADPNGDSPANVDAAKEWREDRNG 163
>pdb|2BEP|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2-25k
pdb|2BF8|A Chain A, Crystal Structure Of Sumo Modified Ubiquitin Conjugating
Enzyme E2-25k
Length = 159
Score = 80.9 bits (198), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 49/115 (42%), Positives = 64/115 (55%), Gaps = 5/115 (4%)
Query: 1 IEGPEGTVYAKGVFEVKIQIPERYPFQPPSVTFATPIYHPNIDN-GGRICLDILNLPPKG 59
I GP T Y G ++++I+IPE YPF PP V F T I+HPNI + G ICLDIL K
Sbjct: 47 IAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDIL----KD 102
Query: 60 AWQPSLNISTVLTSIGLLLSEPNPDDGLMCEASQEYKYNRQAFDLKARSMTEKYA 114
W ++ + TVL S+ LL+ PDD + +YK N + F AR YA
Sbjct: 103 QWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVYA 157
>pdb|3ONG|B Chain B, Crystal Structure Of Uba2ufd-ubc9: Insights Into E1-e2
Interactions In Sumo Pathways
pdb|3ONG|D Chain D, Crystal Structure Of Uba2ufd-ubc9: Insights Into E1-e2
Interactions In Sumo Pathways
Length = 159
Score = 79.7 bits (195), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 61/115 (53%), Gaps = 2/115 (1%)
Query: 1 IEGPEGTVYAKGVFEVKIQIPERYPFQPPSVTFATPIYHPNIDNGGRICLDILNLPPKGA 60
I G EGT +A GV+ + ++ P YP +PP V F YHPN+ G ICL ILN
Sbjct: 47 IPGKEGTNWAGGVYPITVEYPNEYPSKPPKVKFPAGFYHPNVYPSGTICLSILNE--DQD 104
Query: 61 WQPSLNISTVLTSIGLLLSEPNPDDGLMCEASQEYKYNRQAFDLKARSMTEKYAK 115
W+P++ + ++ + LL PNP+ A + + N+ +D K ++Y+K
Sbjct: 105 WRPAITLKQIVLGVQDLLDSPNPNSPAQEPAWRSFSRNKAEYDKKVLLQAKQYSK 159
>pdb|3FSH|A Chain A, Crystal Structure Of The Ubiquitin Conjugating Enzyme
Ube2g2 Bound To The G2br Domain Of Ubiquitin Ligase Gp78
pdb|3FSH|B Chain B, Crystal Structure Of The Ubiquitin Conjugating Enzyme
Ube2g2 Bound To The G2br Domain Of Ubiquitin Ligase Gp78
Length = 168
Score = 79.7 bits (195), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 65/121 (53%), Gaps = 9/121 (7%)
Query: 1 IEGPEGTVYAKGVFEVKIQIPERYPFQPPSVTFATPIYHPNIDNGGRICLDILNLP---P 57
I GPE T + GVF + P YP PP + F ++HPNI GR+C+ IL+ P P
Sbjct: 44 IMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDP 103
Query: 58 KGA------WQPSLNISTVLTSIGLLLSEPNPDDGLMCEASQEYKYNRQAFDLKARSMTE 111
G W P ++ +L S+ +L+EPN + G +AS+ ++ +R+ F A+ + +
Sbjct: 104 MGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDASKMWRDDREQFYKIAKQIVQ 163
Query: 112 K 112
K
Sbjct: 164 K 164
>pdb|2GJD|A Chain A, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|B Chain B, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|C Chain C, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|D Chain D, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2EKE|A Chain A, Structure Of A Sumo-Binding-Motif Mimic Bound To Smt3p-
Ubc9p: Conservation Of A Noncovalent Ubiquitin-Like
Protein-E2 Complex As A Platform For Selective
Interactions Within A Sumo Pathway
pdb|2EKE|B Chain B, Structure Of A Sumo-Binding-Motif Mimic Bound To Smt3p-
Ubc9p: Conservation Of A Noncovalent Ubiquitin-Like
Protein-E2 Complex As A Platform For Selective
Interactions Within A Sumo Pathway
Length = 157
Score = 79.7 bits (195), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 61/115 (53%), Gaps = 2/115 (1%)
Query: 1 IEGPEGTVYAKGVFEVKIQIPERYPFQPPSVTFATPIYHPNIDNGGRICLDILNLPPKGA 60
I G EGT +A GV+ + ++ P YP +PP V F YHPN+ G ICL ILN
Sbjct: 45 IPGKEGTNWAGGVYPITVEYPNEYPSKPPKVKFPAGFYHPNVYPSGTICLSILNE--DQD 102
Query: 61 WQPSLNISTVLTSIGLLLSEPNPDDGLMCEASQEYKYNRQAFDLKARSMTEKYAK 115
W+P++ + ++ + LL PNP+ A + + N+ +D K ++Y+K
Sbjct: 103 WRPAITLKQIVLGVQDLLDSPNPNSPAQEPAWRSFSRNKAEYDKKVLLQAKQYSK 157
>pdb|2UCZ|A Chain A, Ubiquitin Conjugating Enzyme (Ubc7) From Saccharomyces
Cerevisiae
Length = 165
Score = 79.7 bits (195), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 41/116 (35%), Positives = 62/116 (53%), Gaps = 9/116 (7%)
Query: 1 IEGPEGTVYAKGVFEVKIQIPERYPFQPPSVTFATPIYHPNIDNGGRICLDILNLP---- 56
I+GP T YA GVF K++ P+ YP PP +TF I HPNI G +C+ IL+ P
Sbjct: 41 IQGPPDTPYADGVFNAKLEFPKDYPLSPPKLTFTPSILHPNIYPNGEVCISILHSPGDDP 100
Query: 57 -----PKGAWQPSLNISTVLTSIGLLLSEPNPDDGLMCEASQEYKYNRQAFDLKAR 107
+ W P ++ +L S+ +LSEPN + G +A ++ NR F+ + +
Sbjct: 101 NMYELAEERWSPVQSVEKILLSVMSMLSEPNIESGANIDACILWRDNRPEFERQVK 156
>pdb|2KLY|A Chain A, Solution Structure Of Human Ubiquitin Conjugating Enzyme
Ube2g2
Length = 167
Score = 79.7 bits (195), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 65/121 (53%), Gaps = 9/121 (7%)
Query: 1 IEGPEGTVYAKGVFEVKIQIPERYPFQPPSVTFATPIYHPNIDNGGRICLDILNLP---P 57
I GPE T + GVF + P YP PP + F ++HPNI GR+C+ IL+ P P
Sbjct: 43 IMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDP 102
Query: 58 KGA------WQPSLNISTVLTSIGLLLSEPNPDDGLMCEASQEYKYNRQAFDLKARSMTE 111
G W P ++ +L S+ +L+EPN + G +AS+ ++ +R+ F A+ + +
Sbjct: 103 MGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDASKMWRDDREQFYKIAKQIVQ 162
Query: 112 K 112
K
Sbjct: 163 K 163
>pdb|3H8K|A Chain A, Crystal Structure Of Ube2g2 Complxed With The G2br Domain
Of Gp78 At 1.8-A Resolution
Length = 164
Score = 79.3 bits (194), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 65/121 (53%), Gaps = 9/121 (7%)
Query: 1 IEGPEGTVYAKGVFEVKIQIPERYPFQPPSVTFATPIYHPNIDNGGRICLDILNLP---P 57
I GPE T + GVF + P YP PP + F ++HPNI GR+C+ IL+ P P
Sbjct: 40 IMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDP 99
Query: 58 KGA------WQPSLNISTVLTSIGLLLSEPNPDDGLMCEASQEYKYNRQAFDLKARSMTE 111
G W P ++ +L S+ +L+EPN + G +AS+ ++ +R+ F A+ + +
Sbjct: 100 MGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDASKMWRDDREQFYKIAKQIVQ 159
Query: 112 K 112
K
Sbjct: 160 K 160
>pdb|2CYX|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
pdb|2CYX|B Chain B, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
pdb|2CYX|C Chain C, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
Length = 170
Score = 79.3 bits (194), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 65/121 (53%), Gaps = 9/121 (7%)
Query: 1 IEGPEGTVYAKGVFEVKIQIPERYPFQPPSVTFATPIYHPNIDNGGRICLDILNLP---P 57
I GPE T + GVF + P YP PP + F ++HPNI GR+C+ IL+ P P
Sbjct: 46 IMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDP 105
Query: 58 KGA------WQPSLNISTVLTSIGLLLSEPNPDDGLMCEASQEYKYNRQAFDLKARSMTE 111
G W P ++ +L S+ +L+EPN + G +AS+ ++ +R+ F A+ + +
Sbjct: 106 MGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDASKMWRDDREQFYKIAKQIVQ 165
Query: 112 K 112
K
Sbjct: 166 K 166
>pdb|2GRP|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-Y87a
Length = 161
Score = 79.0 bits (193), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 62/114 (54%), Gaps = 2/114 (1%)
Query: 1 IEGPEGTVYAKGVFEVKIQIPERYPFQPPSVTFATPIYHPNIDNGGRICLDILNLPPKGA 60
I G +GT + G+F++++ + YP PP F P++HPN+ G +CL IL
Sbjct: 48 IPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVAPSGTVCLSILE--EDKD 105
Query: 61 WQPSLNISTVLTSIGLLLSEPNPDDGLMCEASQEYKYNRQAFDLKARSMTEKYA 114
W+P++ I +L I LL+EPN D EA Y NR ++ + R+ +K+A
Sbjct: 106 WRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFA 159
>pdb|2GRN|A Chain A, Crystal Structure Of Human Rangap1-Ubc9
pdb|2PE6|A Chain A, Non-Covalent Complex Between Human Sumo-1 And Human Ubc9
Length = 161
Score = 78.6 bits (192), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 62/114 (54%), Gaps = 2/114 (1%)
Query: 1 IEGPEGTVYAKGVFEVKIQIPERYPFQPPSVTFATPIYHPNIDNGGRICLDILNLPPKGA 60
I G +GT + G+F++++ + YP PP F P++HPN+ G +CL IL
Sbjct: 48 IPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILE--EDKD 105
Query: 61 WQPSLNISTVLTSIGLLLSEPNPDDGLMCEASQEYKYNRQAFDLKARSMTEKYA 114
W+P++ I +L I LL+EPN D EA Y NR ++ + R+ +K+A
Sbjct: 106 WRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFA 159
>pdb|1KPS|A Chain A, Structural Basis For E2-Mediated Sumo Conjugation Revealed
By A Complex Between Ubiquitin Conjugating Enzyme Ubc9
And Rangap1
pdb|1KPS|C Chain C, Structural Basis For E2-Mediated Sumo Conjugation Revealed
By A Complex Between Ubiquitin Conjugating Enzyme Ubc9
And Rangap1
Length = 159
Score = 78.6 bits (192), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 62/114 (54%), Gaps = 2/114 (1%)
Query: 1 IEGPEGTVYAKGVFEVKIQIPERYPFQPPSVTFATPIYHPNIDNGGRICLDILNLPPKGA 60
I G +GT + G+F++++ + YP PP F P++HPN+ G +CL IL
Sbjct: 46 IPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILE--EDKD 103
Query: 61 WQPSLNISTVLTSIGLLLSEPNPDDGLMCEASQEYKYNRQAFDLKARSMTEKYA 114
W+P++ I +L I LL+EPN D EA Y NR ++ + R+ +K+A
Sbjct: 104 WRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFA 157
>pdb|1Z5S|A Chain A, Crystal Structure Of A Complex Between Ubc9, Sumo-1,
Rangap1 And Nup358RANBP2
pdb|2PX9|B Chain B, The Intrinsic Affinity Between E2 And The Cys Domain Of E1
In Ubiquitin-Like Modifications
pdb|2VRR|A Chain A, Structure Of Sumo Modified Ubc9
pdb|2XWU|A Chain A, Crystal Structure Of Importin 13 - Ubc9 Complex
pdb|3UIN|A Chain A, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1
Domain From Ranbp2
Length = 158
Score = 78.2 bits (191), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 62/114 (54%), Gaps = 2/114 (1%)
Query: 1 IEGPEGTVYAKGVFEVKIQIPERYPFQPPSVTFATPIYHPNIDNGGRICLDILNLPPKGA 60
I G +GT + G+F++++ + YP PP F P++HPN+ G +CL IL
Sbjct: 45 IPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILE--EDKD 102
Query: 61 WQPSLNISTVLTSIGLLLSEPNPDDGLMCEASQEYKYNRQAFDLKARSMTEKYA 114
W+P++ I +L I LL+EPN D EA Y NR ++ + R+ +K+A
Sbjct: 103 WRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFA 156
>pdb|1U9A|A Chain A, Human Ubiquitin-Conjugating Enzyme Ubc9
pdb|1U9B|A Chain A, MurineHUMAN UBIQUITIN-Conjugating Enzyme Ubc9
Length = 160
Score = 78.2 bits (191), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 62/114 (54%), Gaps = 2/114 (1%)
Query: 1 IEGPEGTVYAKGVFEVKIQIPERYPFQPPSVTFATPIYHPNIDNGGRICLDILNLPPKGA 60
I G +GT + G+F++++ + YP PP F P++HPN+ G +CL IL
Sbjct: 47 IPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILE--EDKD 104
Query: 61 WQPSLNISTVLTSIGLLLSEPNPDDGLMCEASQEYKYNRQAFDLKARSMTEKYA 114
W+P++ I +L I LL+EPN D EA Y NR ++ + R+ +K+A
Sbjct: 105 WRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFA 158
>pdb|2O25|C Chain C, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|2O25|D Chain D, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|1A3S|A Chain A, Human Ubc9
Length = 160
Score = 78.2 bits (191), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 62/114 (54%), Gaps = 2/114 (1%)
Query: 1 IEGPEGTVYAKGVFEVKIQIPERYPFQPPSVTFATPIYHPNIDNGGRICLDILNLPPKGA 60
I G +GT + G+F++++ + YP PP F P++HPN+ G +CL IL
Sbjct: 47 IPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILE--EDKD 104
Query: 61 WQPSLNISTVLTSIGLLLSEPNPDDGLMCEASQEYKYNRQAFDLKARSMTEKYA 114
W+P++ I +L I LL+EPN D EA Y NR ++ + R+ +K+A
Sbjct: 105 WRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFA 158
>pdb|3A4S|A Chain A, The Crystal Structure Of The Sld2:ubc9 Complex
pdb|3A4S|B Chain B, The Crystal Structure Of The Sld2:ubc9 Complex
Length = 163
Score = 78.2 bits (191), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 62/114 (54%), Gaps = 2/114 (1%)
Query: 1 IEGPEGTVYAKGVFEVKIQIPERYPFQPPSVTFATPIYHPNIDNGGRICLDILNLPPKGA 60
I G +GT + G+F++++ + YP PP F P++HPN+ G +CL IL
Sbjct: 50 IPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILE--EDKD 107
Query: 61 WQPSLNISTVLTSIGLLLSEPNPDDGLMCEASQEYKYNRQAFDLKARSMTEKYA 114
W+P++ I +L I LL+EPN D EA Y NR ++ + R+ +K+A
Sbjct: 108 WRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFA 161
>pdb|1YF9|A Chain A, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
pdb|1YF9|B Chain B, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
pdb|1YF9|C Chain C, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
Length = 171
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 58/116 (50%), Gaps = 6/116 (5%)
Query: 1 IEGPEGTVYAKGVFEVKIQIPERYPFQPPSVTFATPIYHPNID-NGGRICLDILNLPPKG 59
+GPEGT Y G + + +Q+P YPF+ PS+ F I HPN+D G +CLD++N
Sbjct: 44 FKGPEGTPYEDGTWMLHVQLPSDYPFKSPSIGFCNRILHPNVDERSGSVCLDVIN----Q 99
Query: 60 AWQPSLNISTVL-TSIGLLLSEPNPDDGLMCEASQEYKYNRQAFDLKARSMTEKYA 114
W P + + + LL PNP D L +A+ +R FD R +A
Sbjct: 100 TWTPMYQLENIFDVFLPQLLRYPNPSDPLNVQAAHLLHADRVGFDALLREHVSTHA 155
>pdb|2GRO|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-N85q
Length = 161
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 61/114 (53%), Gaps = 2/114 (1%)
Query: 1 IEGPEGTVYAKGVFEVKIQIPERYPFQPPSVTFATPIYHPNIDNGGRICLDILNLPPKGA 60
I G +GT + G+F++++ + YP PP F P++HP + G +CL IL
Sbjct: 48 IPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPQVYPSGTVCLSILE--EDKD 105
Query: 61 WQPSLNISTVLTSIGLLLSEPNPDDGLMCEASQEYKYNRQAFDLKARSMTEKYA 114
W+P++ I +L I LL+EPN D EA Y NR ++ + R+ +K+A
Sbjct: 106 WRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFA 159
>pdb|1Y8X|A Chain A, Structural Basis For Recruitment Of Ubc12 By An E2-Binding
Domain In Nedd8's E1
Length = 160
Score = 76.3 bits (186), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 37/100 (37%), Positives = 57/100 (57%), Gaps = 4/100 (4%)
Query: 4 PEGTVYAKGVFEVKIQIPERYPFQPPSVTFATPIYHPNIDNGGRICLDILNLPPKGAWQP 63
P+ Y G F ++ + YP PP V T +YHPNID G +CL+IL + W+P
Sbjct: 43 PDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETXVYHPNIDLEGNVCLNIL----REDWKP 98
Query: 64 SLNISTVLTSIGLLLSEPNPDDGLMCEASQEYKYNRQAFD 103
L I++++ + L EPNP+D L EA++ + NR+ F+
Sbjct: 99 VLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFE 138
>pdb|2GRR|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127s
Length = 161
Score = 75.9 bits (185), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 61/114 (53%), Gaps = 2/114 (1%)
Query: 1 IEGPEGTVYAKGVFEVKIQIPERYPFQPPSVTFATPIYHPNIDNGGRICLDILNLPPKGA 60
I G +GT + G+F++++ + YP PP F P++HPN+ G +CL IL
Sbjct: 48 IPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILE--EDKD 105
Query: 61 WQPSLNISTVLTSIGLLLSEPNPDDGLMCEASQEYKYNRQAFDLKARSMTEKYA 114
W+P++ I +L I LL+EPN EA Y NR ++ + R+ +K+A
Sbjct: 106 WRPAITIKQILLGIQELLNEPNIQSPAQAEAYTIYCQNRVEYEKRVRAQAKKFA 159
>pdb|2ONU|A Chain A, Plasmodium Falciparum Ubiquitin Conjugating Enzyme
Pf10_0330, Putative Homologue Of Human Ube2h
Length = 152
Score = 75.5 bits (184), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 61/116 (52%), Gaps = 6/116 (5%)
Query: 1 IEGPEGTVYAKGVFEVKIQIPERYPFQPPSVTFATPIYHPNIDNG-GRICLDILNLPPKG 59
GP GT Y G+++V + +P+ YPF PS+ F + HPN+D G +CLD++N
Sbjct: 35 FHGPNGTAYEGGIWKVHVTLPDDYPFASPSIGFMNKLLHPNVDEASGSVCLDVIN----Q 90
Query: 60 AWQPSLNISTVL-TSIGLLLSEPNPDDGLMCEASQEYKYNRQAFDLKARSMTEKYA 114
W P ++ V + LL+ PNP D L +A+ ++ ++ K + + YA
Sbjct: 91 TWTPLYSLVNVFEVFLPQLLTYPNPSDPLNSDAASLLMKDKNIYEEKVKEYVKLYA 146
>pdb|2GRQ|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127a
Length = 161
Score = 75.5 bits (184), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 61/114 (53%), Gaps = 2/114 (1%)
Query: 1 IEGPEGTVYAKGVFEVKIQIPERYPFQPPSVTFATPIYHPNIDNGGRICLDILNLPPKGA 60
I G +GT + G+F++++ + YP PP F P++HPN+ G +CL IL
Sbjct: 48 IPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILE--EDKD 105
Query: 61 WQPSLNISTVLTSIGLLLSEPNPDDGLMCEASQEYKYNRQAFDLKARSMTEKYA 114
W+P++ I +L I LL+EPN EA Y NR ++ + R+ +K+A
Sbjct: 106 WRPAITIKQILLGIQELLNEPNIQAPAQAEAYTIYCQNRVEYEKRVRAQAKKFA 159
>pdb|2OB4|A Chain A, Human Ubiquitin-Conjugating Enzyme Cdc34
Length = 180
Score = 75.1 bits (183), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 43/128 (33%), Positives = 66/128 (51%), Gaps = 10/128 (7%)
Query: 1 IEGPEGTVYAKGVFEVKIQIPERYPFQPPSVTFATPIYHPNIDNGGRICLDILNLP---- 56
I GP T Y G F+ +++ P YP+ PP+ F T ++HPNI G +C+ IL+ P
Sbjct: 41 IFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWHPNIYETGDVCISILHPPVDDP 100
Query: 57 -----PKGAWQPSLNISTVLTSIGLLLSEPNPDDGLMCEASQEYKYNRQAFDLKARSMTE 111
P W P+ N+ T+L S+ LL+EPN +AS Y+ +++ K R T+
Sbjct: 101 QSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPANVDASVMYRKWKES-KGKDREYTD 159
Query: 112 KYAKTGIG 119
K +G
Sbjct: 160 IIRKQVLG 167
>pdb|3RZ3|A Chain A, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|B Chain B, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|C Chain C, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|D Chain D, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
Length = 183
Score = 75.1 bits (183), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 43/128 (33%), Positives = 66/128 (51%), Gaps = 10/128 (7%)
Query: 1 IEGPEGTVYAKGVFEVKIQIPERYPFQPPSVTFATPIYHPNIDNGGRICLDILNLP---- 56
I GP T Y G F+ +++ P YP+ PP+ F T ++HPNI G +C+ IL+ P
Sbjct: 44 IFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWHPNIYETGDVCISILHPPVDDP 103
Query: 57 -----PKGAWQPSLNISTVLTSIGLLLSEPNPDDGLMCEASQEYKYNRQAFDLKARSMTE 111
P W P+ N+ T+L S+ LL+EPN +AS Y+ +++ K R T+
Sbjct: 104 QSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPANVDASVMYRKWKES-KGKDREYTD 162
Query: 112 KYAKTGIG 119
K +G
Sbjct: 163 IIRKQVLG 170
>pdb|3UIO|A Chain A, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1
Domain From Ranbp2 Containing Ir2 Motif Ii
pdb|3UIP|A Chain A, Complex Between Human Rangap1-Sumo1, Ubc9 And The Ir1
Domain From Ranbp2 Containing Ir2 Motif Ii
Length = 158
Score = 75.1 bits (183), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 61/114 (53%), Gaps = 2/114 (1%)
Query: 1 IEGPEGTVYAKGVFEVKIQIPERYPFQPPSVTFATPIYHPNIDNGGRICLDILNLPPKGA 60
I G +GT + G+F++++ + YP PP F P++HPN+ G + L IL
Sbjct: 45 IPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVXLSILE--EDKD 102
Query: 61 WQPSLNISTVLTSIGLLLSEPNPDDGLMCEASQEYKYNRQAFDLKARSMTEKYA 114
W+P++ I +L I LL+EPN D EA Y NR ++ + R+ +K+A
Sbjct: 103 WRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYXQNRVEYEKRVRAQAKKFA 156
>pdb|2NVU|C Chain C, Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C111a), A
Trapped Ubiquitin-Like Protein Activation Complex
Length = 180
Score = 74.3 bits (181), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 40/111 (36%), Positives = 60/111 (54%), Gaps = 5/111 (4%)
Query: 4 PEGTVYAKGVFEVKIQIPERYPFQPPSVTFATPIYHPNIDNGGRICLDILNLPPKGAWQP 63
P+ Y G F ++ + YP PP V T +YHPNID G + L+IL + W+P
Sbjct: 63 PDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVALNIL----REDWKP 118
Query: 64 SLNISTVLTSIGLLLSEPNPDDGLMCEASQEYKYNRQAFDLKA-RSMTEKY 113
L I++++ + L EPNP+D L EA++ + NR+ F+ RSM Y
Sbjct: 119 VLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQRSMRGGY 169
>pdb|2UYZ|A Chain A, Non-Covalent Complex Between Ubc9 And Sumo1
Length = 158
Score = 74.3 bits (181), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 61/114 (53%), Gaps = 2/114 (1%)
Query: 1 IEGPEGTVYAKGVFEVKIQIPERYPFQPPSVTFATPIYHPNIDNGGRICLDILNLPPKGA 60
I G +GT + G+F++++ + YP PP F P++HPN+ G + L IL
Sbjct: 45 IPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVSLSILE--EDKD 102
Query: 61 WQPSLNISTVLTSIGLLLSEPNPDDGLMCEASQEYKYNRQAFDLKARSMTEKYA 114
W+P++ I +L I LL+EPN D EA Y NR ++ + R+ +K+A
Sbjct: 103 WRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFA 156
>pdb|3RCZ|B Chain B, Rad60 Sld2 Ubc9 Complex
Length = 163
Score = 72.0 bits (175), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 58/108 (53%), Gaps = 2/108 (1%)
Query: 1 IEGPEGTVYAKGVFEVKIQIPERYPFQPPSVTFATPIYHPNIDNGGRICLDILNLPPKGA 60
I G T + G++++ + PE YP +PP F P++HPN+ G +CL ILN +
Sbjct: 51 IPGKPKTSWEGGLYKLTMAFPEEYPTRPPKCRFTPPLFHPNVYPSGTVCLSILN--EEEG 108
Query: 61 WQPSLNISTVLTSIGLLLSEPNPDDGLMCEASQEYKYNRQAFDLKARS 108
W+P++ I +L I LL +PN EA +K ++ ++ + R+
Sbjct: 109 WKPAITIKQILLGIQDLLDDPNIASPAQTEAYTMFKKDKVEYEKRVRA 156
>pdb|3O2U|A Chain A, S. Cerevisiae Ubc12
pdb|3O2U|B Chain B, S. Cerevisiae Ubc12
Length = 190
Score = 72.0 bits (175), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 53/102 (51%), Gaps = 11/102 (10%)
Query: 1 IEGPEGTVYAKGVFEVKIQIPERYPFQPPSVTFATPIYHPNIDNGGRICLDILNLPPKGA 60
I P+ Y G + E YP +PP V I+HPNID G +CL+IL +
Sbjct: 69 IVRPDEGYYNYGSINFNLDFNEVYPIEPPKVVCLKKIFHPNIDLKGNVCLNIL----RED 124
Query: 61 WQPSLNISTVLTSIGLLLSEPNPDD-------GLMCEASQEY 95
W P+L++ +++T + L EPNP+D L+CE +E+
Sbjct: 125 WSPALDLQSIITGLLFLFLEPNPNDPLNKDAAKLLCEGEKEF 166
>pdb|1WZV|A Chain A, Crystal Structure Of Ubch8
pdb|1WZV|B Chain B, Crystal Structure Of Ubch8
pdb|1WZW|A Chain A, Crystal Structure Of Ubch8
Length = 155
Score = 71.6 bits (174), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 56/110 (50%), Gaps = 3/110 (2%)
Query: 4 PEGTVYAKGVFEVKIQIPERYPFQPPSVTFATPIYHPNIDNGGRICLDILNLPPKGAWQP 63
P+ Y F ++I P YPF+PP + F T IYHPN+D G+ICL I++ W+P
Sbjct: 43 PDQPPYHLKAFNLRISFPPEYPFKPPMIKFTTKIYHPNVDENGQICLPIIS---SENWKP 99
Query: 64 SLNISTVLTSIGLLLSEPNPDDGLMCEASQEYKYNRQAFDLKARSMTEKY 113
VL ++ +L++ PN + L + + N + F A T ++
Sbjct: 100 CTKTCQVLEALNVLVNRPNIREPLRMDLADLLTQNPELFRKNAEEFTLRF 149
>pdb|2KJH|A Chain A, Nmr Based Structural Model Of The Ubch8-Ubiquitin Complex
Length = 152
Score = 71.6 bits (174), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 56/110 (50%), Gaps = 3/110 (2%)
Query: 4 PEGTVYAKGVFEVKIQIPERYPFQPPSVTFATPIYHPNIDNGGRICLDILNLPPKGAWQP 63
P+ Y F ++I P YPF+PP + F T IYHPN+D G+ICL I++ W+P
Sbjct: 40 PDQPPYHLKAFNLRISFPPEYPFKPPMIKFTTKIYHPNVDENGQICLPIIS---SENWKP 96
Query: 64 SLNISTVLTSIGLLLSEPNPDDGLMCEASQEYKYNRQAFDLKARSMTEKY 113
VL ++ +L++ PN + L + + N + F A T ++
Sbjct: 97 CTKTCQVLEALNVLVNRPNIREPLRMDLADLLTQNPELFRKNAEEFTLRF 146
>pdb|1PZV|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
Length = 164
Score = 71.2 bits (173), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 58/113 (51%), Gaps = 9/113 (7%)
Query: 3 GPEGTVYAKGVFEVKIQIPERYPFQPPSVTFATPIYHPNIDNGGRICLDILNLP------ 56
GP T+Y G F+ + P YP +PP + F + I+HPNID G +C+ IL+ P
Sbjct: 42 GPPDTLYEGGFFKAILDFPRDYPQKPPKMKFISEIWHPNIDKEGNVCISILHDPGDDKWG 101
Query: 57 ---PKGAWQPSLNISTVLTSIGLLLSEPNPDDGLMCEASQEYKYNRQAFDLKA 106
P+ W P + T+L S+ +L++PN + +A++ + N F K
Sbjct: 102 YERPEERWLPVHTVETILLSVISMLTDPNFESPANVDAAKMQRENYAEFKKKV 154
>pdb|2EDI|A Chain A, Solution Structure Of The Uq_con Domain From Human Nedd8-
Conjugating Enzyme Nce2
Length = 173
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 60/117 (51%), Gaps = 3/117 (2%)
Query: 4 PEGTVYAKGVFEVKIQIPERYPFQPPSVTFATPIYHPNIDNGGRICLDIL--NLPPKGAW 61
P+ Y G F+ + ++P+ Y PP V T I+HPNI G ICL +L + W
Sbjct: 53 PDEGYYQGGKFQFETEVPDAYNMVPPKVKCLTKIWHPNITETGEICLSLLREHSIDGTGW 112
Query: 62 QPSLNISTVLTSIGLLLSE-PNPDDGLMCEASQEYKYNRQAFDLKARSMTEKYAKTG 117
P+ + V+ + L ++ N DD L EA++ + +++ F K ++YA++G
Sbjct: 113 APTRTLKDVVWGLNSLFTDLLNFDDPLNIEAAEHHLRDKEDFRNKVDDYIKRYARSG 169
>pdb|3FN1|B Chain B, E2-Ring Expansion Of The Nedd8 Cascade Confers Specificity
To Cullin Modification
Length = 167
Score = 61.2 bits (147), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 58/115 (50%), Gaps = 3/115 (2%)
Query: 4 PEGTVYAKGVFEVKIQIPERYPFQPPSVTFATPIYHPNIDNGGRICLDIL--NLPPKGAW 61
P+ Y G F+ + ++P+ Y PP V T I+HPNI G ICL +L + W
Sbjct: 53 PDEGYYQGGKFQFETEVPDAYNMVPPKVKCLTKIWHPNITETGEICLSLLREHSIDGTGW 112
Query: 62 QPSLNISTVLTSIGLLLSE-PNPDDGLMCEASQEYKYNRQAFDLKARSMTEKYAK 115
P+ + V+ + L ++ N DD L EA++ + +++ F K ++YA+
Sbjct: 113 APTRTLKDVVWGLNSLFTDLLNFDDPLNIEAAEHHLRDKEDFRNKVDDYIKRYAR 167
>pdb|1YRV|A Chain A, Novel Ubiquitin-Conjugating Enzyme
Length = 169
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 56/94 (59%), Gaps = 3/94 (3%)
Query: 1 IEGPEGTVYAKGVFEVKIQIPERYPFQPPSVTFATPIYHPNID-NGGRICLDILNLPPKG 59
IEG + +V+ VF++ I Y + PP V F T +HPN+D + G+ C+D L+ P K
Sbjct: 59 IEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFITIPFHPNVDPHTGQPCIDFLDNPEK- 117
Query: 60 AWQPSLNISTVLTSIGLLLSEPNPDDGLMCEASQ 93
W + +S++L ++ ++LS P ++ + EA++
Sbjct: 118 -WNTNYTLSSILLALQVMLSNPVLENPVNLEAAR 150
>pdb|2F4W|A Chain A, Human Ubiquitin-Conjugating Enzyme E2 J2
pdb|2F4W|B Chain B, Human Ubiquitin-Conjugating Enzyme E2 J2
Length = 187
Score = 57.8 bits (138), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 57/117 (48%), Gaps = 8/117 (6%)
Query: 1 IEGPEGTVYAKGVFEVKIQIPERYPFQPPSVTFATPIYHPNIDNGGRICLDILNLPPKGA 60
+ GPE T Y G + K+ P +PF+PPS+ TP + R+CL I + P
Sbjct: 50 VRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYMITP--NGRFKCNTRLCLSITDFHP-DT 106
Query: 61 WQPSLNISTVLTSIGLLLSEPNPDDGLMCEAS----QEYKYNRQAFDLKARSMTEKY 113
W P+ ++ST+LT + + E P G + E S ++ AF+LK + E +
Sbjct: 107 WNPAWSVSTILTGLLSFMVEKGPTLGSI-ETSDFTKRQLAVQSLAFNLKDKVFCELF 162
>pdb|3CEG|A Chain A, Crystal Structure Of The Ubc Domain Of Baculoviral Iap
Repeat- Containing Protein 6
pdb|3CEG|B Chain B, Crystal Structure Of The Ubc Domain Of Baculoviral Iap
Repeat- Containing Protein 6
Length = 323
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 48/92 (52%), Gaps = 11/92 (11%)
Query: 1 IEGPEGTVYAKGVFEVKIQIPERYPFQPPSVTFATP-----IYHPNIDNGGRICLDILNL 55
I GP T YA G FE + P+ YP PP V T ++PN+ N G++CL ILN
Sbjct: 116 ITGPADTPYANGCFEFDVYFPQDYPSSPPLVNLETTGGHSVRFNPNLYNDGKVCLSILNT 175
Query: 56 ---PPKGAWQP-SLNISTVLTSIG--LLLSEP 81
P+ W P + + VL S+ +L++EP
Sbjct: 176 WHGRPEEKWNPQTSSFLQVLVSVQSLILVAEP 207
>pdb|2H2Y|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
pdb|2H2Y|B Chain B, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
pdb|2H2Y|C Chain C, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
pdb|2H2Y|D Chain D, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
Length = 136
Score = 54.7 bits (130), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 46/78 (58%), Gaps = 5/78 (6%)
Query: 3 GPEGTVYAKGVFEVKIQIPERYPFQPPSVTFA-TPIYHPNIDNGGRICLDILNLPPKGAW 61
G E T+YA V+++KI P+ YP +PP V F P H ++ + G ICL +L +
Sbjct: 58 GLENTIYANEVYKIKIIFPDNYPLKPPIVYFLQKPPKHTHVYSNGDICLSVLG----DDY 113
Query: 62 QPSLNISTVLTSIGLLLS 79
PSL+IS ++ SI +LS
Sbjct: 114 NPSLSISGLILSIISMLS 131
>pdb|2FO3|A Chain A, Plasmodium Vivax Ubiquitin Conjugating Enzyme E2
Length = 125
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 46/78 (58%), Gaps = 5/78 (6%)
Query: 3 GPEGTVYAKGVFEVKIQIPERYPFQPPSVTFA-TPIYHPNIDNGGRICLDILNLPPKGAW 61
G E T+YA V+++KI P+ YP +PP V F P H ++ + G ICL +L +
Sbjct: 44 GLENTIYANEVYKLKIIFPDDYPLKPPIVYFLQKPPKHTHVYSNGDICLSLLG----DDY 99
Query: 62 QPSLNISTVLTSIGLLLS 79
PSL+IS ++ SI +LS
Sbjct: 100 NPSLSISGLVLSIISMLS 117
>pdb|2A7L|A Chain A, Structure Of The Human Hypothetical Ubiquitin-Conjugating
Enzyme, Loc55284
pdb|2A7L|B Chain B, Structure Of The Human Hypothetical Ubiquitin-Conjugating
Enzyme, Loc55284
Length = 136
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 44/82 (53%), Gaps = 8/82 (9%)
Query: 1 IEGPEGTVYAKGVFEVKIQIPERYPFQPPSVTFA---TPIYHPNIDNGGRICLDILNLPP 57
+EG GT+Y F++ + RYPF P V F P+ HP++ + G ICL IL
Sbjct: 60 MEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGENIPV-HPHVYSNGHICLSILT--- 115
Query: 58 KGAWQPSLNISTVLTSIGLLLS 79
W P+L++ +V SI +LS
Sbjct: 116 -EDWSPALSVQSVCLSIISMLS 136
>pdb|2Y9O|A Chain A, Pex4p-Pex22p Mutant I Structure
Length = 172
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 43/89 (48%), Gaps = 5/89 (5%)
Query: 1 IEGPEGTVYAKGVFEVKIQIPERYPFQPPSVTFA-TPIYHPNIDNG-GRICLDILNLPPK 58
I GP T Y F + I++P YP PP ++F I H N+ + G ICL+IL
Sbjct: 54 ISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQNNILHSNVKSATGEICLNILK---P 110
Query: 59 GAWQPSLNISTVLTSIGLLLSEPNPDDGL 87
W P ++ + ++ LL EP D L
Sbjct: 111 EEWTPVWDLLHCVHAVWRLLREPVSDSPL 139
>pdb|2Y9M|A Chain A, Pex4p-Pex22p Structure
Length = 172
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 43/89 (48%), Gaps = 5/89 (5%)
Query: 1 IEGPEGTVYAKGVFEVKIQIPERYPFQPPSVTFA-TPIYHPNIDNG-GRICLDILNLPPK 58
I GP T Y F + I++P YP PP ++F I H N+ + G ICL+IL
Sbjct: 54 ISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQNNILHCNVKSATGEICLNILK---P 110
Query: 59 GAWQPSLNISTVLTSIGLLLSEPNPDDGL 87
W P ++ + ++ LL EP D L
Sbjct: 111 EEWTPVWDLLHCVHAVWRLLREPVCDSPL 139
>pdb|2Y9P|A Chain A, Pex4p-Pex22p Mutant Ii Structure
Length = 172
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 43/89 (48%), Gaps = 5/89 (5%)
Query: 1 IEGPEGTVYAKGVFEVKIQIPERYPFQPPSVTFA-TPIYHPNIDNG-GRICLDILNLPPK 58
I GP T Y F + I++P YP PP ++F I H N+ + G ICL+IL
Sbjct: 54 ISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQNNILHCNVKSATGEICLNILK---P 110
Query: 59 GAWQPSLNISTVLTSIGLLLSEPNPDDGL 87
W P ++ + ++ LL EP D L
Sbjct: 111 EEWTPVWDLLHCVHAVWRLLREPVCDSPL 139
>pdb|4DS2|A Chain A, Ubiquitin Conjugating Enzyme (Putative) From Trypanosoma
Cruzi
pdb|4DS2|B Chain B, Ubiquitin Conjugating Enzyme (Putative) From Trypanosoma
Cruzi
Length = 167
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 6/73 (8%)
Query: 1 IEGPEGTVY--AKGVFEVKIQIPERYPFQPPSVTFATPIYHPNIDNGGRICLDILNLPPK 58
++ P +VY A +++ + + YP +PP+V F TP+Y P + G IC ++N
Sbjct: 56 VKAPADSVYGGAGNTYQLSVLFSDDYPHEPPTVRFVTPVYSPLVTGEGGICDRMVN---- 111
Query: 59 GAWQPSLNISTVL 71
W P + S V+
Sbjct: 112 DFWTPDQHASDVI 124
>pdb|2Q0V|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2,
Putative, From Plasmodium Falciparum
Length = 156
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Query: 1 IEGPEGTVYAKGVFEVKIQIPERYPFQPPSVTFATPIYHPNIDNGGRICLDILNLPPKGA 60
I G GTV+ ++ + I + YP PP+V F T I +DN GR+ + NL
Sbjct: 61 IFGQPGTVFENRIYSLTIFCDDNYPDSPPTVKFDTKIEMSCVDNCGRVIKN--NLHILKN 118
Query: 61 WQPSLNISTVLTSI 74
W + I T+L S+
Sbjct: 119 WNRNYTIETILISL 132
>pdb|3E95|C Chain C, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
Length = 158
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Query: 1 IEGPEGTVYAKGVFEVKIQIPERYPFQPPSVTFATPIYHPNIDNGGRICLDILNLPPKGA 60
I G GTV+ ++ + I + YP PP+V F T I +DN GR+ + NL
Sbjct: 65 IFGQPGTVFENRIYSLTIFCDDNYPDSPPTVKFDTKIEMSCVDNCGRVIKN--NLHILKN 122
Query: 61 WQPSLNISTVLTSI 74
W + I T+L S+
Sbjct: 123 WNRNYTIETILISL 136
>pdb|1J74|A Chain A, Crystal Structure Of Mms2
pdb|1J7D|A Chain A, Crystal Structure Of Hmms2-Hubc13
Length = 145
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Query: 1 IEGPEGTVYAKGVFEVKIQIPERYPFQPPSVTFATPIYHPNIDNGGRICLDILNLPPKGA 60
I GP T Y ++ +K++ +YP PPSV F T I I+N + +D ++P
Sbjct: 50 IIGPPRTNYENRIYSLKVECGPKYPEAPPSVRFVTKINMNGINNSSGM-VDARSIPVLAK 108
Query: 61 WQPSLNISTVLTSIGLLL 78
WQ S +I VL + L+
Sbjct: 109 WQNSYSIKVVLQELRRLM 126
>pdb|1ZGU|A Chain A, Solution Structure Of The Human Mms2-Ubiquitin Complex
Length = 139
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Query: 1 IEGPEGTVYAKGVFEVKIQIPERYPFQPPSVTFATPIYHPNIDNGGRICLDILNLPPKGA 60
I GP T Y ++ +K++ +YP PPSV F T I I+N + +D ++P
Sbjct: 44 IIGPPRTNYENRIYSLKVECGPKYPEAPPSVRFVTKINMNGINNSSGM-VDARSIPVLAK 102
Query: 61 WQPSLNISTVLTSIGLLL 78
WQ S +I VL + L+
Sbjct: 103 WQNSYSIKVVLQELRRLM 120
>pdb|3VON|B Chain B, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|D Chain D, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|F Chain F, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|I Chain I, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|K Chain K, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|M Chain M, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|P Chain P, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|R Chain R, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|T Chain T, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|W Chain W, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Y Chain Y, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|AA Chain a, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|DD Chain d, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|FF Chain f, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|HH Chain h, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|KK Chain k, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|MM Chain m, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|OO Chain o, Crystalstructure Of The Ubiquitin Protease
Length = 138
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Query: 1 IEGPEGTVYAKGVFEVKIQIPERYPFQPPSVTFATPIYHPNIDNGGRICLDILNLPPKGA 60
I GP T Y ++ +K++ +YP PPSV F T I I+N + +D ++P
Sbjct: 45 IIGPPRTNYENRIYSLKVECGPKYPEAPPSVRFVTKINMNGINNSSGM-VDARSIPVLAK 103
Query: 61 WQPSLNISTVLTSIGLLL 78
WQ S +I VL + L+
Sbjct: 104 WQNSYSIKVVLQELRRLM 121
>pdb|4EPO|A Chain A, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|E Chain E, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|I Chain I, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 149
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Query: 1 IEGPEGTVYAKGVFEVKIQIPERYPFQPPSVTFATPIYHPNIDNGGRICLDILNLPPKGA 60
I GP T Y ++ +K++ +YP PPSV F T I I+N + +D ++P
Sbjct: 55 IIGPPRTNYENRIYSLKVECGPKYPEAPPSVRFVTKINMNGINNSSGM-VDARSIPVLAK 113
Query: 61 WQPSLNISTVLTSIGLLL 78
WQ S +I VL + L+
Sbjct: 114 WQNSYSIKVVLQELRRLM 131
>pdb|2HLW|A Chain A, Solution Structure Of The Human Ubiquitin-Conjugating
Enzyme Variant Uev1a
Length = 170
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 42/92 (45%), Gaps = 7/92 (7%)
Query: 1 IEGPEGTVYAKGVFEVKIQIPERYPFQPPSVTFATPIYHPNIDNGGRICLDILNLPPKGA 60
I GP T+Y ++ +KI+ +YP PP V F T I +++ + +D +
Sbjct: 75 IIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNGVNSSNGV-VDPRAISVLAK 133
Query: 61 WQPSLNISTVLTSIGLLLSE------PNPDDG 86
WQ S +I VL + L+ P P +G
Sbjct: 134 WQNSYSIKVVLQELRRLMMSKENMKLPQPPEG 165
>pdb|2C2V|C Chain C, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|F Chain F, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|I Chain I, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|L Chain L, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
Length = 142
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 41/92 (44%), Gaps = 7/92 (7%)
Query: 1 IEGPEGTVYAKGVFEVKIQIPERYPFQPPSVTFATPIYHPNIDNGGRICLDILNLPPKGA 60
I GP T+Y ++ +KI+ +YP PP V F T I + N N +D +
Sbjct: 47 ILGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKI-NMNGVNSSNGVVDPRAISVLAK 105
Query: 61 WQPSLNISTVLTSIGLLLSE------PNPDDG 86
WQ S +I VL + L+ P P +G
Sbjct: 106 WQNSYSIKVVLQELRRLMMSKENMKLPQPPEG 137
>pdb|2A4D|A Chain A, Structure Of The Human Ubiquitin-Conjugating Enzyme E2
Variant 1 (Uev- 1)
Length = 160
Score = 37.0 bits (84), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
Query: 1 IEGPEGTVYAKGVFEVKIQIPERYPFQPPSVTFATPIYHPNIDNGGRICLDILNLPPKGA 60
I GP T+Y ++ +KI+ +YP PP V F T I +++ + +D +
Sbjct: 65 IIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNGVNSSNGV-VDPRAISVLAK 123
Query: 61 WQPSLNISTVLTSIGLLL 78
WQ S +I VL + L+
Sbjct: 124 WQNSYSIKVVLQELRRLM 141
>pdb|2QGX|A Chain A, Ubiquitin-Conjugating Enzyme E2q
pdb|2QGX|B Chain B, Ubiquitin-Conjugating Enzyme E2q
pdb|2QGX|C Chain C, Ubiquitin-Conjugating Enzyme E2q
pdb|2QGX|D Chain D, Ubiquitin-Conjugating Enzyme E2q
Length = 169
Score = 35.8 bits (81), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
Query: 20 IPERYPFQPPSVTFATPIYHPN-IDNGGRICLDILNLPPKGAWQPSLNISTVLTSI 74
+ +PF PP V +P+ + GG IC+++L K W + +I +V+ I
Sbjct: 76 FKDNFPFDPPFVRVVSPVLSGGYVLGGGAICMELLT---KQGWSSAYSIESVIMQI 128
>pdb|1ZUO|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme (Ubci)
Involved In Embryo Attachment And Implantation
pdb|1ZUO|B Chain B, Structure Of Human Ubiquitin-Conjugating Enzyme (Ubci)
Involved In Embryo Attachment And Implantation
Length = 186
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 8/71 (11%)
Query: 5 EGTVYAKGVFEVKIQIPERYPFQPPSVTFATPIYHPN-IDNGGRICLDILNLPPKGAWQP 63
EG Y F K + +PF PP V P+ + GG +C+++L K W
Sbjct: 86 EGIEYILLNFSFK----DNFPFDPPFVRVVLPVLSGGYVLGGGALCMELLT---KQGWSS 138
Query: 64 SLNISTVLTSI 74
+ +I +V+ I
Sbjct: 139 AYSIESVIMQI 149
>pdb|2WTS|A Chain A, Crystal Structure Of Sortase C-1 (Srtc-1) Mutant H131d
From S. Pneumoniae
pdb|2WTS|B Chain B, Crystal Structure Of Sortase C-1 (Srtc-1) Mutant H131d
From S. Pneumoniae
Length = 213
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 7/54 (12%)
Query: 201 CQIQERNGHENENLVANQSPAISMDYPGSAMLQHDICSRQKHHLHQTSDPMNGN 254
+I ER GH + P I +D P A ++ + HL TS P+ GN
Sbjct: 61 LEIHERMGH-------VEIPVIDVDLPVYAGTAEEVLQQGAGHLEGTSLPIGGN 107
>pdb|2W1J|A Chain A, Crystal Structure Of Sortase C-1 (Srtc-1) From
Streptococcus Pneumoniae
pdb|2W1J|B Chain B, Crystal Structure Of Sortase C-1 (Srtc-1) From
Streptococcus Pneumoniae
Length = 212
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 7/54 (12%)
Query: 201 CQIQERNGHENENLVANQSPAISMDYPGSAMLQHDICSRQKHHLHQTSDPMNGN 254
+I ER GH + P I +D P A ++ + HL TS P+ GN
Sbjct: 60 LEIHERMGH-------VEIPVIDVDLPVYAGTAEEVLQQGAGHLEGTSLPIGGN 106
>pdb|1JAT|B Chain B, Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX
Length = 138
Score = 28.1 bits (61), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 36/82 (43%), Gaps = 4/82 (4%)
Query: 1 IEGPEGTVYAKGVFEVKIQIPERYPFQPPSVTFATPIYHPNID-NGGRICLDILNLPPKG 59
I GP + + ++ + I YP PP VTF + I P ++ G + D L
Sbjct: 46 ILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFISKINLPCVNPTTGEVQTDFHTL---R 102
Query: 60 AWQPSLNISTVLTSIGLLLSEP 81
W+ + + T+L + ++ P
Sbjct: 103 DWKRAYTMETLLLDLRKEMATP 124
>pdb|2GMI|B Chain B, Mms2UBC13~UBIQUITIN
Length = 137
Score = 28.1 bits (61), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 36/82 (43%), Gaps = 4/82 (4%)
Query: 1 IEGPEGTVYAKGVFEVKIQIPERYPFQPPSVTFATPIYHPNID-NGGRICLDILNLPPKG 59
I GP + + ++ + I YP PP VTF + I P ++ G + D L
Sbjct: 45 ILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFISKINLPCVNPTTGEVQTDFHTL---R 101
Query: 60 AWQPSLNISTVLTSIGLLLSEP 81
W+ + + T+L + ++ P
Sbjct: 102 DWKRAYTMETLLLDLRKEMATP 123
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.311 0.128 0.370
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,677,665
Number of Sequences: 62578
Number of extensions: 364813
Number of successful extensions: 777
Number of sequences better than 100.0: 122
Number of HSP's better than 100.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 564
Number of HSP's gapped (non-prelim): 122
length of query: 334
length of database: 14,973,337
effective HSP length: 99
effective length of query: 235
effective length of database: 8,778,115
effective search space: 2062857025
effective search space used: 2062857025
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 52 (24.6 bits)