Query 037005
Match_columns 334
No_of_seqs 157 out of 1348
Neff 4.4
Searched_HMMs 46136
Date Fri Mar 29 07:36:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037005.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037005hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0417 Ubiquitin-protein liga 100.0 7.3E-38 1.6E-42 273.1 10.8 111 1-115 37-147 (148)
2 COG5078 Ubiquitin-protein liga 100.0 1.4E-36 3E-41 267.5 11.8 111 1-115 42-152 (153)
3 PTZ00390 ubiquitin-conjugating 100.0 1.2E-34 2.7E-39 253.6 13.0 111 1-115 38-148 (152)
4 PLN00172 ubiquitin conjugating 100.0 4.1E-34 8.9E-39 248.7 13.1 110 1-114 37-146 (147)
5 KOG0418 Ubiquitin-protein liga 100.0 7.5E-33 1.6E-37 249.4 11.1 113 1-117 42-155 (200)
6 KOG0419 Ubiquitin-protein liga 100.0 1.7E-32 3.6E-37 236.0 10.5 108 1-112 40-147 (152)
7 KOG0424 Ubiquitin-protein liga 100.0 2.3E-31 5E-36 231.5 12.0 113 1-115 45-157 (158)
8 KOG0425 Ubiquitin-protein liga 100.0 2.4E-31 5.1E-36 234.1 11.3 114 1-114 42-164 (171)
9 PF00179 UQ_con: Ubiquitin-con 100.0 1.2E-30 2.6E-35 222.0 10.2 107 1-110 34-140 (140)
10 smart00212 UBCc Ubiquitin-conj 100.0 2.7E-29 5.9E-34 215.1 12.7 111 1-114 35-145 (145)
11 cd00195 UBCc Ubiquitin-conjuga 100.0 3.1E-29 6.8E-34 213.8 11.3 106 1-110 35-141 (141)
12 KOG0416 Ubiquitin-protein liga 100.0 1.4E-28 3.1E-33 219.1 7.7 114 1-118 36-151 (189)
13 KOG0422 Ubiquitin-protein liga 99.9 4.7E-27 1E-31 203.7 12.0 111 4-117 41-151 (153)
14 KOG0426 Ubiquitin-protein liga 99.9 3.6E-27 7.7E-32 203.5 9.9 113 1-113 41-162 (165)
15 KOG0421 Ubiquitin-protein liga 99.9 5E-27 1.1E-31 204.9 7.5 106 1-111 65-170 (175)
16 KOG0420 Ubiquitin-protein liga 99.9 8E-27 1.7E-31 208.0 8.8 111 2-116 66-176 (184)
17 KOG0423 Ubiquitin-protein liga 99.9 2.8E-26 6.1E-31 205.4 8.1 115 1-119 46-160 (223)
18 KOG0894 Ubiquitin-protein liga 99.7 1.7E-17 3.8E-22 153.1 10.1 100 1-103 41-143 (244)
19 KOG0427 Ubiquitin conjugating 99.6 2.4E-16 5.1E-21 136.5 7.1 76 1-80 50-126 (161)
20 KOG0895 Ubiquitin-conjugating 99.6 7.1E-16 1.5E-20 166.0 7.7 130 1-136 887-1032(1101)
21 KOG0428 Non-canonical ubiquiti 99.6 1.7E-15 3.6E-20 142.5 7.2 147 1-180 46-194 (314)
22 KOG0429 Ubiquitin-conjugating 99.5 3.2E-14 7E-19 132.0 9.7 106 6-115 59-170 (258)
23 KOG0895 Ubiquitin-conjugating 99.2 3.6E-11 7.8E-16 130.3 6.6 81 1-81 318-405 (1101)
24 KOG0896 Ubiquitin-conjugating 98.7 2.9E-08 6.3E-13 86.4 6.0 76 1-78 45-121 (138)
25 PF14461 Prok-E2_B: Prokaryoti 98.1 1.3E-05 2.8E-10 68.8 7.4 67 10-80 34-106 (133)
26 PF05743 UEV: UEV domain; Int 97.8 3.2E-05 6.9E-10 66.0 5.3 67 8-79 42-116 (121)
27 KOG0897 Predicted ubiquitin-co 97.5 0.00023 5E-09 61.0 5.9 90 15-108 14-108 (122)
28 KOG2391 Vacuolar sorting prote 95.7 0.022 4.8E-07 56.9 6.3 76 3-83 57-140 (365)
29 PF14457 Prok-E2_A: Prokaryoti 89.5 0.49 1.1E-05 42.7 4.2 61 16-79 57-125 (162)
30 PF05773 RWD: RWD domain; Int 87.9 0.49 1.1E-05 37.7 2.9 28 10-37 47-74 (113)
31 smart00591 RWD domain in RING 86.1 0.83 1.8E-05 36.2 3.2 25 12-36 41-65 (107)
32 PF14462 Prok-E2_E: Prokaryoti 85.7 3.5 7.6E-05 35.9 7.1 72 5-78 35-119 (122)
33 PF08694 UFC1: Ubiquitin-fold 83.6 1.1 2.4E-05 40.3 3.2 55 14-71 77-135 (161)
34 PF14460 Prok-E2_D: Prokaryoti 54.6 14 0.00031 33.3 3.5 45 35-86 90-137 (175)
35 PF06113 BRE: Brain and reprod 36.2 83 0.0018 31.9 5.9 34 8-41 61-95 (333)
36 KOG3357 Uncharacterized conser 34.9 40 0.00086 30.2 3.0 64 4-71 60-138 (167)
37 cd00421 intradiol_dioxygenase 31.7 55 0.0012 28.6 3.4 26 10-35 64-90 (146)
38 cd03457 intradiol_dioxygenase_ 29.7 59 0.0013 30.0 3.4 26 10-35 85-110 (188)
39 KOG4018 Uncharacterized conser 28.4 48 0.001 31.7 2.6 19 13-31 50-68 (215)
40 TIGR03737 PRTRC_B PRTRC system 23.5 1E+02 0.0023 29.5 3.9 42 35-84 131-176 (228)
41 cd03459 3,4-PCD Protocatechuat 22.3 1E+02 0.0022 27.7 3.4 26 10-35 71-101 (158)
No 1
>KOG0417 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.3e-38 Score=273.07 Aligned_cols=111 Identities=56% Similarity=0.977 Sum_probs=109.4
Q ss_pred CCCCCCCCCCCCEEEEEEEcCCCCCCCCCeeEeccccccceecCCCCeeeccCCCCCCCCCCCCCCHHHHHHHHHHhhcC
Q 037005 1 IEGPEGTVYAKGVFEVKIQIPERYPFQPPSVTFATPIYHPNIDNGGRICLDILNLPPKGAWQPSLNISTVLTSIGLLLSE 80 (334)
Q Consensus 1 I~GP~gTPYEGGiFkf~I~fP~dYP~kPPkVrFlTpIfHPNVd~~G~ICLdiL~~~~~e~WsPs~TL~sILlsIqsLL~~ 80 (334)
|.||.+||||||+|++.|.||++||++||+|+|+|+||||||+..|+||+|+| +..|+|+++|..||++|++||.+
T Consensus 37 I~GP~~SpYEgG~F~l~I~~p~~YP~~PPkV~F~TkIyHPNI~~~G~IclDIL----k~~WsPAl~i~~VllsI~sLL~~ 112 (148)
T KOG0417|consen 37 ILGPPGSPYEGGVFFLEIHFPEDYPFKPPKVRFLTKIYHPNIDSNGRICLDIL----KDQWSPALTISKVLLSICSLLSD 112 (148)
T ss_pred EECCCCCCcCCCEEEEEEECCCCCCCCCCceEeecccccCCcCccccchHHhh----hccCChhhHHHHHHHHHHHHhcC
Confidence 68999999999999999999999999999999999999999999999999999 78899999999999999999999
Q ss_pred CCCCChhhHHHHHHHHHCHHHHHHHHHHHHHHHhc
Q 037005 81 PNPDDGLMCEASQEYKYNRQAFDLKARSMTEKYAK 115 (334)
Q Consensus 81 PnpdsPlN~EAA~lyk~n~eaF~rkare~tkkyA~ 115 (334)
||+++|++.++|.+|+.|+.+|+++||+||++||+
T Consensus 113 PnpddPL~~~ia~~~k~d~~~~~~~ARewt~kyA~ 147 (148)
T KOG0417|consen 113 PNPDDPLVPDIAELYKTDRAKYERTAREWTRKYAM 147 (148)
T ss_pred CCCCccccHHHHHHHHhhHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999997
No 2
>COG5078 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-36 Score=267.46 Aligned_cols=111 Identities=44% Similarity=0.900 Sum_probs=109.0
Q ss_pred CCCCCCCCCCCCEEEEEEEcCCCCCCCCCeeEeccccccceecCCCCeeeccCCCCCCCCCCCCCCHHHHHHHHHHhhcC
Q 037005 1 IEGPEGTVYAKGVFEVKIQIPERYPFQPPSVTFATPIYHPNIDNGGRICLDILNLPPKGAWQPSLNISTVLTSIGLLLSE 80 (334)
Q Consensus 1 I~GP~gTPYEGGiFkf~I~fP~dYP~kPPkVrFlTpIfHPNVd~~G~ICLdiL~~~~~e~WsPs~TL~sILlsIqsLL~~ 80 (334)
|.||++||||||+|++.|.||++||++||+|+|+|+||||||+.+|+||+++| .+.|+|.++|.+||++|+.||.+
T Consensus 42 i~GP~dtpYegg~f~~~l~fP~~YP~~PPkv~F~t~i~HPNV~~~G~vCLdIL----~~~WsP~~~l~sILlsl~slL~~ 117 (153)
T COG5078 42 ITGPPDTPYEGGIFKLTLEFPEDYPFKPPKVRFTTKIFHPNVDPSGNVCLDIL----KDRWSPVYTLETILLSLQSLLLS 117 (153)
T ss_pred EECCCCCCcCCCEEEEEEECCCCCCCCCCeeeeccCCcCCCcCCCCCChhHHH----hCCCCccccHHHHHHHHHHHHcC
Confidence 68999999999999999999999999999999999999999999999999999 78999999999999999999999
Q ss_pred CCCCChhhHHHHHHHHHCHHHHHHHHHHHHHHHhc
Q 037005 81 PNPDDGLMCEASQEYKYNRQAFDLKARSMTEKYAK 115 (334)
Q Consensus 81 PnpdsPlN~EAA~lyk~n~eaF~rkare~tkkyA~ 115 (334)
||+++|+|.+||.+|++|+++|.++||+|+++|+.
T Consensus 118 PN~~~Pln~daa~~~~~d~~~y~~~vr~~~~~~~~ 152 (153)
T COG5078 118 PNPDSPLNTEAATLYREDKEEYEKKVREWVKKYAE 152 (153)
T ss_pred CCCCCCCChHHHHHHHhCHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999985
No 3
>PTZ00390 ubiquitin-conjugating enzyme; Provisional
Probab=100.00 E-value=1.2e-34 Score=253.55 Aligned_cols=111 Identities=52% Similarity=0.934 Sum_probs=109.0
Q ss_pred CCCCCCCCCCCCEEEEEEEcCCCCCCCCCeeEeccccccceecCCCCeeeccCCCCCCCCCCCCCCHHHHHHHHHHhhcC
Q 037005 1 IEGPEGTVYAKGVFEVKIQIPERYPFQPPSVTFATPIYHPNIDNGGRICLDILNLPPKGAWQPSLNISTVLTSIGLLLSE 80 (334)
Q Consensus 1 I~GP~gTPYEGGiFkf~I~fP~dYP~kPPkVrFlTpIfHPNVd~~G~ICLdiL~~~~~e~WsPs~TL~sILlsIqsLL~~ 80 (334)
|.||++|||+||+|+++|.||++||++||+|+|.|+||||||+.+|.||+++| .+.|+|+++|.+||++|++||.+
T Consensus 38 i~GP~~tpY~gg~f~~~i~~p~~YP~~pP~v~F~t~i~HPNV~~~G~iCl~iL----~~~W~p~~ti~~iL~~i~~ll~~ 113 (152)
T PTZ00390 38 MEGPDGTPYEGGYYKLELFLPEQYPMEPPKVRFLTKIYHPNIDKLGRICLDIL----KDKWSPALQIRTVLLSIQALLSA 113 (152)
T ss_pred EEcCCCCCCcCcEEEEEEECccccCCCCCEEEEecCCeeceECCCCeEECccC----cccCCCCCcHHHHHHHHHHHHhC
Confidence 57999999999999999999999999999999999999999999999999999 68999999999999999999999
Q ss_pred CCCCChhhHHHHHHHHHCHHHHHHHHHHHHHHHhc
Q 037005 81 PNPDDGLMCEASQEYKYNRQAFDLKARSMTEKYAK 115 (334)
Q Consensus 81 PnpdsPlN~EAA~lyk~n~eaF~rkare~tkkyA~ 115 (334)
|++++|+|.+||++|++|++.|.++|++|+++||.
T Consensus 114 P~~~~pln~~aa~~~~~d~~~f~~~a~~~~~~~a~ 148 (152)
T PTZ00390 114 PEPDDPLDTSVADHFKNNRADAEKVAREWNQKYAK 148 (152)
T ss_pred CCCCCchHHHHHHHHHHCHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999997
No 4
>PLN00172 ubiquitin conjugating enzyme; Provisional
Probab=100.00 E-value=4.1e-34 Score=248.70 Aligned_cols=110 Identities=51% Similarity=0.945 Sum_probs=108.0
Q ss_pred CCCCCCCCCCCCEEEEEEEcCCCCCCCCCeeEeccccccceecCCCCeeeccCCCCCCCCCCCCCCHHHHHHHHHHhhcC
Q 037005 1 IEGPEGTVYAKGVFEVKIQIPERYPFQPPSVTFATPIYHPNIDNGGRICLDILNLPPKGAWQPSLNISTVLTSIGLLLSE 80 (334)
Q Consensus 1 I~GP~gTPYEGGiFkf~I~fP~dYP~kPPkVrFlTpIfHPNVd~~G~ICLdiL~~~~~e~WsPs~TL~sILlsIqsLL~~ 80 (334)
|.||++|||+||+|++.|.||++||++||+|+|.|+||||||+.+|.||+++| .+.|+|+++|++||.+|+.||.+
T Consensus 37 i~GP~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPNv~~~G~iCl~il----~~~W~p~~ti~~il~~i~~ll~~ 112 (147)
T PLN00172 37 IIGPSDSPYAGGVFFLSILFPPDYPFKPPKVQFTTKIYHPNINSNGSICLDIL----RDQWSPALTVSKVLLSISSLLTD 112 (147)
T ss_pred EECCCCCCCCCCEEEEEEECCcccCCCCCEEEEecCcccceECCCCEEEcccC----cCCCCCcCcHHHHHHHHHHHHhC
Confidence 57999999999999999999999999999999999999999999999999999 68999999999999999999999
Q ss_pred CCCCChhhHHHHHHHHHCHHHHHHHHHHHHHHHh
Q 037005 81 PNPDDGLMCEASQEYKYNRQAFDLKARSMTEKYA 114 (334)
Q Consensus 81 PnpdsPlN~EAA~lyk~n~eaF~rkare~tkkyA 114 (334)
|++++|+|.+||++|.+|+++|.++|++|+++||
T Consensus 113 P~~~~p~n~~aa~~~~~~~~~f~~~a~~~~~~~a 146 (147)
T PLN00172 113 PNPDDPLVPEIARVFKENRSRYEATAREWTQRYA 146 (147)
T ss_pred CCCCCchHHHHHHHHHHCHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999997
No 5
>KOG0418 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.5e-33 Score=249.38 Aligned_cols=113 Identities=47% Similarity=0.817 Sum_probs=110.2
Q ss_pred CCCCCCCCCCCCEEEEEEEcCCCCCCCCCeeEeccccccceecC-CCCeeeccCCCCCCCCCCCCCCHHHHHHHHHHhhc
Q 037005 1 IEGPEGTVYAKGVFEVKIQIPERYPFQPPSVTFATPIYHPNIDN-GGRICLDILNLPPKGAWQPSLNISTVLTSIGLLLS 79 (334)
Q Consensus 1 I~GP~gTPYEGGiFkf~I~fP~dYP~kPPkVrFlTpIfHPNVd~-~G~ICLdiL~~~~~e~WsPs~TL~sILlsIqsLL~ 79 (334)
|.||+|||||||+|.++|.+|++|||+||+|+|.|+||||||.. +|.||||+| ++.|.+++||+.+|++||++|.
T Consensus 42 I~GP~~TPYEGG~FeldI~iPe~YPF~pPkv~F~TkIwHPnVSs~tGaICLDil----kd~Wa~slTlrtvLislQalL~ 117 (200)
T KOG0418|consen 42 IAGPEDTPYEGGVFELDIKIPENYPFKPPKVKFITKIWHPNVSSQTGAICLDIL----KDQWAASLTLRTVLISLQALLC 117 (200)
T ss_pred ecCCCCCCCCCceEEEEEecCCCCCCCCCceeeeeeeecCCCCcccccchhhhh----hcccchhhhHHHHHHHHHHHHc
Confidence 68999999999999999999999999999999999999999955 999999999 8999999999999999999999
Q ss_pred CCCCCChhhHHHHHHHHHCHHHHHHHHHHHHHHHhcCC
Q 037005 80 EPNPDDGLMCEASQEYKYNRQAFDLKARSMTEKYAKTG 117 (334)
Q Consensus 80 ~PnpdsPlN~EAA~lyk~n~eaF~rkare~tkkyA~~~ 117 (334)
.|+|.+|.+...|++|.+|++.|.+.||.|+..||...
T Consensus 118 ~pEp~dPqDavva~qy~~n~~~F~~TAr~WT~~fA~~~ 155 (200)
T KOG0418|consen 118 APEPKDPQDAVVAEQYVDNYEMFYKTARYWTTEFAGGR 155 (200)
T ss_pred CCCCCChHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999984
No 6
>KOG0419 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=1.7e-32 Score=235.97 Aligned_cols=108 Identities=35% Similarity=0.797 Sum_probs=105.1
Q ss_pred CCCCCCCCCCCCEEEEEEEcCCCCCCCCCeeEeccccccceecCCCCeeeccCCCCCCCCCCCCCCHHHHHHHHHHhhcC
Q 037005 1 IEGPEGTVYAKGVFEVKIQIPERYPFQPPSVTFATPIYHPNIDNGGRICLDILNLPPKGAWQPSLNISTVLTSIGLLLSE 80 (334)
Q Consensus 1 I~GP~gTPYEGGiFkf~I~fP~dYP~kPPkVrFlTpIfHPNVd~~G~ICLdiL~~~~~e~WsPs~TL~sILlsIqsLL~~ 80 (334)
|.||.+|||+||+|++.|.|+++||.+||.|+|++.+||||||.+|.||+|+| ...|+|.+++..||.+||+||.+
T Consensus 40 I~Gp~~tp~e~gtFkLtl~FteeYpnkPP~VrFvs~mFHPNvya~G~iClDiL----qNrWsp~Ydva~ILtsiQslL~d 115 (152)
T KOG0419|consen 40 IFGPQDTPFEGGTFKLTLEFTEEYPNKPPTVRFVSKMFHPNVYADGSICLDIL----QNRWSPTYDVASILTSIQSLLND 115 (152)
T ss_pred EEcCCCCCcCCceEEEEEEcccccCCCCCeeEeeeeccCCCcCCCCcchHHHH----hcCCCCchhHHHHHHHHHHHhcC
Confidence 68999999999999999999999999999999999999999999999999999 67999999999999999999999
Q ss_pred CCCCChhhHHHHHHHHHCHHHHHHHHHHHHHH
Q 037005 81 PNPDDGLMCEASQEYKYNRQAFDLKARSMTEK 112 (334)
Q Consensus 81 PnpdsPlN~EAA~lyk~n~eaF~rkare~tkk 112 (334)
|++++|+|.|||++|.+|+.+|+++++..+++
T Consensus 116 Pn~~sPaN~eAA~Lf~e~~rey~rrVk~~veq 147 (152)
T KOG0419|consen 116 PNPNSPANSEAARLFSENKREYERRVKETVEQ 147 (152)
T ss_pred CCCCCcccHHHHHHHhhChHHHHHHHHHHHHH
Confidence 99999999999999999999999999988764
No 7
>KOG0424 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2.3e-31 Score=231.46 Aligned_cols=113 Identities=34% Similarity=0.725 Sum_probs=108.8
Q ss_pred CCCCCCCCCCCCEEEEEEEcCCCCCCCCCeeEeccccccceecCCCCeeeccCCCCCCCCCCCCCCHHHHHHHHHHhhcC
Q 037005 1 IEGPEGTVYAKGVFEVKIQIPERYPFQPPSVTFATPIYHPNIDNGGRICLDILNLPPKGAWQPSLNISTVLTSIGLLLSE 80 (334)
Q Consensus 1 I~GP~gTPYEGGiFkf~I~fP~dYP~kPPkVrFlTpIfHPNVd~~G~ICLdiL~~~~~e~WsPs~TL~sILlsIqsLL~~ 80 (334)
|.||+||+||||.|.+++.||++||++||+|+|.+++||||||.+|.|||+||+. ..+|+|+.||.+||+.||.||.+
T Consensus 45 IPG~~~t~wEGg~y~l~v~F~~dyP~~PPkckF~~pl~HPNVypsgtVcLsiL~e--~~~W~paitikqiL~gIqdLL~~ 122 (158)
T KOG0424|consen 45 IPGKKGTPWEGGLYKLTVNFPDDYPSSPPKCKFKPPLFHPNVYPSGTVCLSILNE--EKDWRPAITIKQILLGIQDLLDT 122 (158)
T ss_pred cCCCCCCcCcCceEEEEEeCCccCCCCCCccccCCCCcCCCcCCCCcEehhhhcc--ccCCCchhhHHHHHHHHHHHhcC
Confidence 7899999999999999999999999999999999999999999999999999963 33599999999999999999999
Q ss_pred CCCCChhhHHHHHHHHHCHHHHHHHHHHHHHHHhc
Q 037005 81 PNPDDGLMCEASQEYKYNRQAFDLKARSMTEKYAK 115 (334)
Q Consensus 81 PnpdsPlN~EAA~lyk~n~eaF~rkare~tkkyA~ 115 (334)
||+.+|++.||...|+.|+.+|.++||..+++|+.
T Consensus 123 Pn~~~pAq~eA~~~~~~~r~eYekrvr~qak~~a~ 157 (158)
T KOG0424|consen 123 PNITSPAQTEAYTIYCQDRAEYEKRVRAQAKEYAK 157 (158)
T ss_pred CCCCCchhhHHHHHHhhCHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999985
No 8
>KOG0425 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2.4e-31 Score=234.12 Aligned_cols=114 Identities=31% Similarity=0.693 Sum_probs=108.3
Q ss_pred CCCCCCCCCCCCEEEEEEEcCCCCCCCCCeeEeccccccceecCCCCeeeccCCCCC---------CCCCCCCCCHHHHH
Q 037005 1 IEGPEGTVYAKGVFEVKIQIPERYPFQPPSVTFATPIYHPNIDNGGRICLDILNLPP---------KGAWQPSLNISTVL 71 (334)
Q Consensus 1 I~GP~gTPYEGGiFkf~I~fP~dYP~kPPkVrFlTpIfHPNVd~~G~ICLdiL~~~~---------~e~WsPs~TL~sIL 71 (334)
|.||++|+||||.|+..+.||.|||.+||+++|+|.|||||||++|++|.+||..+. .+.|.|..|+++||
T Consensus 42 i~gppdTlYeGG~FkA~m~FP~dYP~sPP~~rF~s~mwHPNvy~~G~vCISILH~pgdD~~gyE~~~erW~Pv~tvetIl 121 (171)
T KOG0425|consen 42 IIGPPDTLYEGGFFKAHMKFPQDYPLSPPTFRFTSKMWHPNVYEDGDVCISILHPPGDDPSGYELPSERWLPVQTVETIL 121 (171)
T ss_pred EEcCCCccccCceeEEEEeCcccCCCCCCceeeehhhcCCCcCCCCCEEEEeecCCCCCcccCCChhhccCCccchhHhH
Confidence 689999999999999999999999999999999999999999999999999997553 46899999999999
Q ss_pred HHHHHhhcCCCCCChhhHHHHHHHHHCHHHHHHHHHHHHHHHh
Q 037005 72 TSIGLLLSEPNPDDGLMCEASQEYKYNRQAFDLKARSMTEKYA 114 (334)
Q Consensus 72 lsIqsLL~~PnpdsPlN~EAA~lyk~n~eaF~rkare~tkkyA 114 (334)
++|.+||.+||.++|+|.+||+.|++++++|.++|++++.+-.
T Consensus 122 lSiIsmL~~PN~~SPANVDAa~~~Ren~~EykkkV~r~vr~s~ 164 (171)
T KOG0425|consen 122 LSIISMLNSPNDESPANVDAAKEWRENPEEYKKKVRRCVRRSQ 164 (171)
T ss_pred HHHHHHHcCCCCCCccchHHHHHHhhCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999997643
No 9
>PF00179 UQ_con: Ubiquitin-conjugating enzyme; InterPro: IPR000608 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]. Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme mediates an ATP-dependent transfer of a thioester-linked ubiquitin molecule to a cysteine residue on the E2 enzyme. The E2 enzyme (6.3.2.19 from EC) then either transfers the ubiquitin moiety directly to a substrate, or to an E3 ligase, which can also ubiquitinylate a substrate. There are several different E2 enzymes (over 30 in humans), which are broadly grouped into four classes, all of which have a core catalytic domain (containing the active site cysteine), and some of which have short N- and C-terminal amino acid extensions: class I enzymes consist of just the catalytic core domain (UBC), class II possess a UBC and a C-terminal extension, class III possess a UBC and an N-terminal extension, and class IV possess a UBC and both N- and C-terminal extensions. These extensions appear to be important for some subfamily function, including E2 localisation and protein-protein interactions []. In addition, there are proteins with an E2-like fold that are devoid of catalytic activity, but which appear to assist in poly-ubiquitin chain formation.; GO: 0016881 acid-amino acid ligase activity; PDB: 2AAK_A 3SY2_C 1FBV_C 3SQV_C 1C4Z_D 1JAT_B 2GMI_B 2H2Y_D 2R0J_A 3E95_B ....
Probab=99.97 E-value=1.2e-30 Score=221.97 Aligned_cols=107 Identities=55% Similarity=0.995 Sum_probs=97.1
Q ss_pred CCCCCCCCCCCCEEEEEEEcCCCCCCCCCeeEeccccccceecCCCCeeeccCCCCCCCCCCCCCCHHHHHHHHHHhhcC
Q 037005 1 IEGPEGTVYAKGVFEVKIQIPERYPFQPPSVTFATPIYHPNIDNGGRICLDILNLPPKGAWQPSLNISTVLTSIGLLLSE 80 (334)
Q Consensus 1 I~GP~gTPYEGGiFkf~I~fP~dYP~kPPkVrFlTpIfHPNVd~~G~ICLdiL~~~~~e~WsPs~TL~sILlsIqsLL~~ 80 (334)
|.||++|||+||+|+|+|.||++||++||+|+|.|+||||||+.+|.||+++|. .+.|+|.++|.+||.+|++||.+
T Consensus 34 i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~v~f~t~i~HPni~~~G~icl~~l~---~~~W~p~~~i~~il~~i~~ll~~ 110 (140)
T PF00179_consen 34 IFGPPGTPYEGGIFKFRISFPPDYPFSPPKVRFLTPIFHPNIDENGRICLDILN---PESWSPSYTIESILLSIQSLLSE 110 (140)
T ss_dssp EEBETTSTTTTSEEEEEEEETTTTTTS--EEEESSS-SBTTB-TTSBBGHGGGT---TTTC-TTSHHHHHHHHHHHHHHS
T ss_pred EeccCccceecccccccccccccccccccccccccccccccccccccchhhhhh---cccCCcccccccHHHHHHHHHhC
Confidence 579999999999999999999999999999999999999999999999999994 24599999999999999999999
Q ss_pred CCCCChhhHHHHHHHHHCHHHHHHHHHHHH
Q 037005 81 PNPDDGLMCEASQEYKYNRQAFDLKARSMT 110 (334)
Q Consensus 81 PnpdsPlN~EAA~lyk~n~eaF~rkare~t 110 (334)
|++++++|.+|+++|++|+++|.++||+|.
T Consensus 111 p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~ 140 (140)
T PF00179_consen 111 PNPEDPLNEEAAELYKNDREEFEKKAREWA 140 (140)
T ss_dssp TCTTSTSSHHHHHHHHHCHHHHHHHHHHH-
T ss_pred CCCCCcchHHHHHHHHHCHHHHHHHHHHcC
Confidence 999999999999999999999999999884
No 10
>smart00212 UBCc Ubiquitin-conjugating enzyme E2, catalytic domain homologues. Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this active site cysteine.
Probab=99.96 E-value=2.7e-29 Score=215.13 Aligned_cols=111 Identities=54% Similarity=0.968 Sum_probs=106.7
Q ss_pred CCCCCCCCCCCCEEEEEEEcCCCCCCCCCeeEeccccccceecCCCCeeeccCCCCCCCCCCCCCCHHHHHHHHHHhhcC
Q 037005 1 IEGPEGTVYAKGVFEVKIQIPERYPFQPPSVTFATPIYHPNIDNGGRICLDILNLPPKGAWQPSLNISTVLTSIGLLLSE 80 (334)
Q Consensus 1 I~GP~gTPYEGGiFkf~I~fP~dYP~kPPkVrFlTpIfHPNVd~~G~ICLdiL~~~~~e~WsPs~TL~sILlsIqsLL~~ 80 (334)
|.||++|||+||+|+|.|.||++||++||+|+|.+++|||||+++|.||+++|. .+.|+|.+++.+||.+|+.+|.+
T Consensus 35 i~gp~~~~y~g~~f~~~l~~p~~yP~~pP~v~f~~~i~Hp~i~~~G~icl~~l~---~~~W~p~~~l~~il~~i~~~l~~ 111 (145)
T smart00212 35 IVGPPGTPYEGGIFKLTIEFPPDYPFKPPKVKFITKIYHPNVDSSGEICLDILK---QEKWSPATTLETVLLSIQSLLSE 111 (145)
T ss_pred EEcCCCCCcCCcEEEEEEECCcccCCCCCEEEEeCCceEeeECCCCCEehhhcC---CCCCCCCCcHHHHHHHHHHHHhC
Confidence 579999999999999999999999999999999999999999999999999993 27899999999999999999999
Q ss_pred CCCCChhhHHHHHHHHHCHHHHHHHHHHHHHHHh
Q 037005 81 PNPDDGLMCEASQEYKYNRQAFDLKARSMTEKYA 114 (334)
Q Consensus 81 PnpdsPlN~EAA~lyk~n~eaF~rkare~tkkyA 114 (334)
|++++++|.+||++|+++++.|.++|++++++|+
T Consensus 112 p~~~~~~n~eaa~~~~~~~~~f~~~~~~~~~k~~ 145 (145)
T smart00212 112 PNPDSPLNADAATLYKKNREEFKKKAREWTKKYA 145 (145)
T ss_pred CCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999874
No 11
>cd00195 UBCc Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the active site cysteine essential for ubiquitination and appear to function in DNA repair pathways which were omitted from the scope of this CD.
Probab=99.96 E-value=3.1e-29 Score=213.84 Aligned_cols=106 Identities=53% Similarity=0.966 Sum_probs=102.1
Q ss_pred CCCCCCCCCCCCEEEEEEEcCCCCCCCCCeeEeccccccceecCCCCeeeccCCCCCCCC-CCCCCCHHHHHHHHHHhhc
Q 037005 1 IEGPEGTVYAKGVFEVKIQIPERYPFQPPSVTFATPIYHPNIDNGGRICLDILNLPPKGA-WQPSLNISTVLTSIGLLLS 79 (334)
Q Consensus 1 I~GP~gTPYEGGiFkf~I~fP~dYP~kPPkVrFlTpIfHPNVd~~G~ICLdiL~~~~~e~-WsPs~TL~sILlsIqsLL~ 79 (334)
|.||++|||+||+|+|.|.||++||++||+|+|.+++|||||+.+|.||+++| ... |+|.++|.+||.+|+.+|.
T Consensus 35 i~g~~~t~y~g~~~~~~~~~p~~yP~~pP~v~f~~~i~HpnV~~~G~icl~~l----~~~~W~p~~~l~~il~~i~~~l~ 110 (141)
T cd00195 35 IRGPPDTPYEGGIFKLDIEFPEDYPFKPPKVRFVTKIYHPNVDENGKICLSIL----KTHGWSPAYTLRTVLLSLQSLLN 110 (141)
T ss_pred EecCCCCCccCCEEEEEEECCCccCCCCCeEEEeCCcccCCCCCCCCCchhhc----CCCCcCCcCcHHHHHHHHHHHHh
Confidence 57999999999999999999999999999999999999999999999999999 445 9999999999999999999
Q ss_pred CCCCCChhhHHHHHHHHHCHHHHHHHHHHHH
Q 037005 80 EPNPDDGLMCEASQEYKYNRQAFDLKARSMT 110 (334)
Q Consensus 80 ~PnpdsPlN~EAA~lyk~n~eaF~rkare~t 110 (334)
+|++++|+|.+||.+|++|+++|.++|++|+
T Consensus 111 ~p~~~~~~n~~aa~~~~~~~~~f~~~~~~~~ 141 (141)
T cd00195 111 EPNPSDPLNAEAAKLYKENREEFKKKAREWT 141 (141)
T ss_pred CCCCCCchhHHHHHHHHHCHHHHHHHHHHhC
Confidence 9999999999999999999999999999874
No 12
>KOG0416 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.4e-28 Score=219.07 Aligned_cols=114 Identities=34% Similarity=0.791 Sum_probs=108.3
Q ss_pred CCCCCCCCCCCCEEEEEEEcCCCCCCCCCeeEeccccccceecC-CCCeeeccCCCCCCCCCCCCCCHHHHHHH-HHHhh
Q 037005 1 IEGPEGTVYAKGVFEVKIQIPERYPFQPPSVTFATPIYHPNIDN-GGRICLDILNLPPKGAWQPSLNISTVLTS-IGLLL 78 (334)
Q Consensus 1 I~GP~gTPYEGGiFkf~I~fP~dYP~kPPkVrFlTpIfHPNVd~-~G~ICLdiL~~~~~e~WsPs~TL~sILls-IqsLL 78 (334)
+.||.+|||+||+|+++|.+|++||++.|.|.|+++||||||++ +|.|||+.+ ...|+|.+.|..|+.. |-.||
T Consensus 36 f~GP~ds~YegGvWkv~V~lPd~YP~KSPSIGFvnKIfHPNIDe~SGsVCLDVi----NQtWSp~yDL~NIfetfLPQLL 111 (189)
T KOG0416|consen 36 FHGPKDSPYEGGVWKVRVELPDNYPFKSPSIGFVNKIFHPNIDEASGSVCLDVI----NQTWSPLYDLVNIFETFLPQLL 111 (189)
T ss_pred eeCCCCCcccCceEEEEEECCCCCCCCCCcccceeeccCCCchhccCccHHHHH----hhhhhHHHHHHHHHHHHhHHHh
Confidence 46999999999999999999999999999999999999999987 999999999 6899999999999977 47899
Q ss_pred cCCCCCChhhHHHHHHHHHCHHHHHHHHHHHHHHHhcCCC
Q 037005 79 SEPNPDDGLMCEASQEYKYNRQAFDLKARSMTEKYAKTGI 118 (334)
Q Consensus 79 ~~PnpdsPlN~EAA~lyk~n~eaF~rkare~tkkyA~~~~ 118 (334)
..||+.+|+|.|||.+|..++++|++++++++++||.+.-
T Consensus 112 ~YPNp~DPLN~eAAal~l~~~~~Y~~~v~eY~~kYA~~~~ 151 (189)
T KOG0416|consen 112 RYPNPSDPLNGEAAALYLRDPEEYEEKVKEYIKKYATPEA 151 (189)
T ss_pred cCCCCCCCcccHHHHHHhcCHHHHHHHHHHHHHHhcChhh
Confidence 9999999999999999999999999999999999998743
No 13
>KOG0422 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=4.7e-27 Score=203.74 Aligned_cols=111 Identities=35% Similarity=0.788 Sum_probs=107.9
Q ss_pred CCCCCCCCCEEEEEEEcCCCCCCCCCeeEeccccccceecCCCCeeeccCCCCCCCCCCCCCCHHHHHHHHHHhhcCCCC
Q 037005 4 PEGTVYAKGVFEVKIQIPERYPFQPPSVTFATPIYHPNIDNGGRICLDILNLPPKGAWQPSLNISTVLTSIGLLLSEPNP 83 (334)
Q Consensus 4 P~gTPYEGGiFkf~I~fP~dYP~kPPkVrFlTpIfHPNVd~~G~ICLdiL~~~~~e~WsPs~TL~sILlsIqsLL~~Pnp 83 (334)
|.+-||..|.|++.|.||.+|||+||+|.|.|+||||||++.|.||+.++. .++|.|.++..+||.+|..++.+|++
T Consensus 41 pd~ppY~kgaF~l~I~fp~eYPFKPP~i~f~tkiYHpNVDe~gqvClPiis---~EnWkP~T~teqVlqaLi~liN~P~p 117 (153)
T KOG0422|consen 41 PDKPPYNKGAFRLEIDFPVEYPFKPPKIKFKTKIYHPNVDEKGQVCLPIIS---AENWKPATRTEQVLQALIALINDPEP 117 (153)
T ss_pred CCCCCccCcceEEEeeCCCCCCCCCCeeeeeeeeccCCCCCCCceeeeeee---cccccCcccHHHHHHHHHHHhcCCCc
Confidence 788899999999999999999999999999999999999999999999996 68999999999999999999999999
Q ss_pred CChhhHHHHHHHHHCHHHHHHHHHHHHHHHhcCC
Q 037005 84 DDGLMCEASQEYKYNRQAFDLKARSMTEKYAKTG 117 (334)
Q Consensus 84 dsPlN~EAA~lyk~n~eaF~rkare~tkkyA~~~ 117 (334)
+.|++.++|.+|..|+..|.++|.+||++|+...
T Consensus 118 e~plr~dlA~ey~~d~~kF~K~Aee~tkK~~e~r 151 (153)
T KOG0422|consen 118 EHPLRIDLAEEYIKDPKKFVKNAEEFTKKYSEKR 151 (153)
T ss_pred cccchhhHHHHHHHCHHHHHHhHHHHHHHhcCcC
Confidence 9999999999999999999999999999999764
No 14
>KOG0426 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=3.6e-27 Score=203.51 Aligned_cols=113 Identities=34% Similarity=0.755 Sum_probs=108.3
Q ss_pred CCCCCCCCCCCCEEEEEEEcCCCCCCCCCeeEeccccccceecCCCCeeeccCCCCC---------CCCCCCCCCHHHHH
Q 037005 1 IEGPEGTVYAKGVFEVKIQIPERYPFQPPSVTFATPIYHPNIDNGGRICLDILNLPP---------KGAWQPSLNISTVL 71 (334)
Q Consensus 1 I~GP~gTPYEGGiFkf~I~fP~dYP~kPPkVrFlTpIfHPNVd~~G~ICLdiL~~~~---------~e~WsPs~TL~sIL 71 (334)
|.||++|+|+||+|..+|.||.|||..||+++|...+||||||.+|+||+++|..+. .++|+|..+++.||
T Consensus 41 I~GP~~T~f~~GvfpA~l~FP~DYPLsPPkm~Ftc~~fHPNiy~dG~VCISILHaPGDDP~~YEls~ERWSPVQSvEKIL 120 (165)
T KOG0426|consen 41 IQGPEDTCFEGGVFPARLSFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYELSAERWSPVQSVEKIL 120 (165)
T ss_pred eeCCCCCcccCCccceeeecCCCCCCCCCceeeecccccCcccCCCeEEEEEeeCCCCCCccchhhhhcCChHHHHHHHH
Confidence 689999999999999999999999999999999999999999999999999998764 46899999999999
Q ss_pred HHHHHhhcCCCCCChhhHHHHHHHHHCHHHHHHHHHHHHHHH
Q 037005 72 TSIGLLLSEPNPDDGLMCEASQEYKYNRQAFDLKARSMTEKY 113 (334)
Q Consensus 72 lsIqsLL~~PnpdsPlN~EAA~lyk~n~eaF~rkare~tkky 113 (334)
+++.+||.+||-++++|.+|+.++++|+++|.+.|+..+.|.
T Consensus 121 LSV~SMLaEPNdESgANvdA~~mWRe~R~ef~~i~~~lvrKt 162 (165)
T KOG0426|consen 121 LSVVSMLAEPNDESGANVDACKMWREDREEFEKIAKRLVRKT 162 (165)
T ss_pred HHHHHHHcCCCcccCcccHHHHHHHHhHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999998764
No 15
>KOG0421 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=5e-27 Score=204.90 Aligned_cols=106 Identities=37% Similarity=0.772 Sum_probs=102.4
Q ss_pred CCCCCCCCCCCCEEEEEEEcCCCCCCCCCeeEeccccccceecCCCCeeeccCCCCCCCCCCCCCCHHHHHHHHHHhhcC
Q 037005 1 IEGPEGTVYAKGVFEVKIQIPERYPFQPPSVTFATPIYHPNIDNGGRICLDILNLPPKGAWQPSLNISTVLTSIGLLLSE 80 (334)
Q Consensus 1 I~GP~gTPYEGGiFkf~I~fP~dYP~kPPkVrFlTpIfHPNVd~~G~ICLdiL~~~~~e~WsPs~TL~sILlsIqsLL~~ 80 (334)
|.||.+|+|+|-.|++.+.||.+||+.||+|+|+|++|||||+..|.|||||| ++.|+..+.++.||++||+||-+
T Consensus 65 ItGp~dTvyegl~yklSl~Fp~~YPy~pP~vkFltpc~HPNVD~~GnIcLDIL----kdKWSa~YdVrTILLSiQSLLGE 140 (175)
T KOG0421|consen 65 ITGPKDTVYEGLKYKLSLSFPNNYPYKPPTVKFLTPCFHPNVDLSGNICLDIL----KDKWSAVYDVRTILLSIQSLLGE 140 (175)
T ss_pred eeCCCCccccCcEEEEEEecCCCCCCCCCeeEeeccccCCCccccccchHHHH----HHHHHHHHhHHHHHHHHHHHhCC
Confidence 78999999999999999999999999999999999999999999999999999 89999999999999999999999
Q ss_pred CCCCChhhHHHHHHHHHCHHHHHHHHHHHHH
Q 037005 81 PNPDDGLMCEASQEYKYNRQAFDLKARSMTE 111 (334)
Q Consensus 81 PnpdsPlN~EAA~lyk~n~eaF~rkare~tk 111 (334)
||.++|+|..||.++. |.++|.+.+.+.-+
T Consensus 141 PNn~SPLNaqAAelW~-d~~eykk~l~~~Y~ 170 (175)
T KOG0421|consen 141 PNNSSPLNAQAAELWS-DQEEYKKYLEALYK 170 (175)
T ss_pred CCCCCcchhHHHHHhc-CHHHHHHHHHHHhh
Confidence 9999999999999998 99999999876654
No 16
>KOG0420 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=8e-27 Score=208.04 Aligned_cols=111 Identities=37% Similarity=0.726 Sum_probs=105.4
Q ss_pred CCCCCCCCCCCEEEEEEEcCCCCCCCCCeeEeccccccceecCCCCeeeccCCCCCCCCCCCCCCHHHHHHHHHHhhcCC
Q 037005 2 EGPEGTVYAKGVFEVKIQIPERYPFQPPSVTFATPIYHPNIDNGGRICLDILNLPPKGAWQPSLNISTVLTSIGLLLSEP 81 (334)
Q Consensus 2 ~GP~gTPYEGGiFkf~I~fP~dYP~kPPkVrFlTpIfHPNVd~~G~ICLdiL~~~~~e~WsPs~TL~sILlsIqsLL~~P 81 (334)
.-|..+.|+||.|+|.+.+|+.||++||+|+|+|+||||||+.+|.|||+|| .++|+|..+|.+|+.+|+.||.+|
T Consensus 66 i~PdEGyY~gGkf~F~~~v~~~Yp~~PPKVkCltkV~HPNId~~GnVCLnIL----RedW~P~lnL~sIi~GL~~LF~ep 141 (184)
T KOG0420|consen 66 ITPDEGYYQGGKFRFKFKVPNAYPHEPPKVKCLTKVYHPNIDLDGNVCLNIL----REDWRPVLNLNSIIYGLQFLFLEP 141 (184)
T ss_pred EccCcceecCceEEEEEECCCCCCCCCCeeeeeeccccCCcCCcchHHHHHH----HhcCccccchHHHHHHHHHHhccC
Confidence 3588999999999999999999999999999999999999999999999999 689999999999999999999999
Q ss_pred CCCChhhHHHHHHHHHCHHHHHHHHHHHHHHHhcC
Q 037005 82 NPDDGLMCEASQEYKYNRQAFDLKARSMTEKYAKT 116 (334)
Q Consensus 82 npdsPlN~EAA~lyk~n~eaF~rkare~tkkyA~~ 116 (334)
++++|+|.+||.+++.|++.|+.+||.....|+-.
T Consensus 142 n~eDpLN~eAA~~l~~n~e~F~~~Vr~~m~gg~v~ 176 (184)
T KOG0420|consen 142 NPEDPLNKEAAAVLKSNREGFENNVRRAMSGGCVG 176 (184)
T ss_pred CCcccccHHHHHHHHhCHHHHHHHHHHHHhcCccC
Confidence 99999999999999999999999999887766543
No 17
>KOG0423 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=2.8e-26 Score=205.36 Aligned_cols=115 Identities=43% Similarity=0.716 Sum_probs=111.9
Q ss_pred CCCCCCCCCCCCEEEEEEEcCCCCCCCCCeeEeccccccceecCCCCeeeccCCCCCCCCCCCCCCHHHHHHHHHHhhcC
Q 037005 1 IEGPEGTVYAKGVFEVKIQIPERYPFQPPSVTFATPIYHPNIDNGGRICLDILNLPPKGAWQPSLNISTVLTSIGLLLSE 80 (334)
Q Consensus 1 I~GP~gTPYEGGiFkf~I~fP~dYP~kPPkVrFlTpIfHPNVd~~G~ICLdiL~~~~~e~WsPs~TL~sILlsIqsLL~~ 80 (334)
|.||.||||++|+|++.+.+..|||.+||+-.|+|+||||||..+|.||+..| +.+|+|.++|++||+.|.+||..
T Consensus 46 IeGP~GTPYa~GlFRmKL~L~kDFP~sPPKgYFlTKIFHPNVaaNGEICVNtL----KkDW~p~LGirHvLltikCLLI~ 121 (223)
T KOG0423|consen 46 IEGPVGTPYANGLFRMKLALSKDFPHSPPKGYFLTKIFHPNVAANGEICVNTL----KKDWNPSLGIRHVLLTIKCLLIE 121 (223)
T ss_pred ccCCCCCccccceeeehhhhcCCCCCCCCcceeeeeeccCCcccCceehhhhh----hcccCcccchhhHhhhhheeeec
Confidence 78999999999999999999999999999999999999999999999999999 89999999999999999999999
Q ss_pred CCCCChhhHHHHHHHHHCHHHHHHHHHHHHHHHhcCCCC
Q 037005 81 PNPDDGLMCEASQEYKYNRQAFDLKARSMTEKYAKTGIG 119 (334)
Q Consensus 81 PnpdsPlN~EAA~lyk~n~eaF~rkare~tkkyA~~~~~ 119 (334)
|+|++.+|++|.+++.+++++|.++||.++..++.+...
T Consensus 122 PnPESALNEeAGkmLLEnYdeYa~rARl~TeIHa~p~~~ 160 (223)
T KOG0423|consen 122 PNPESALNEEAGKMLLENYDEYARRARLYTEIHAKPKPK 160 (223)
T ss_pred CChHHHHhHHHHHHHHHhHHHHHHHHHHHHHhhcCCCCC
Confidence 999999999999999999999999999999999987543
No 18
>KOG0894 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=1.7e-17 Score=153.08 Aligned_cols=100 Identities=32% Similarity=0.666 Sum_probs=80.4
Q ss_pred CCCCCCCCCCCCEEEEEEEcCCCCCCCCCeeEeccccccceecCCCCeeeccCCCCCCCCCCCCCCHHHHHHHHHHhhcC
Q 037005 1 IEGPEGTVYAKGVFEVKIQIPERYPFQPPSVTFATPIYHPNIDNGGRICLDILNLPPKGAWQPSLNISTVLTSIGLLLSE 80 (334)
Q Consensus 1 I~GP~gTPYEGGiFkf~I~fP~dYP~kPPkVrFlTpIfHPNVd~~G~ICLdiL~~~~~e~WsPs~TL~sILlsIqsLL~~ 80 (334)
|+||++|||+||.|+.+|.||++||++||.|+.+||-.. +-.+.++||++.++|| +.|+|.|++.+||.+|.++|.+
T Consensus 41 l~GpedTPy~GG~YhGkl~FP~eyP~KPPaI~MiTPNGR--FktntRLCLSiSDfHP-dsWNP~WsVStILtGLlSFM~e 117 (244)
T KOG0894|consen 41 LRGPEDTPYYGGYYHGKLIFPPEYPFKPPAITMITPNGR--FKTNTRLCLSISDFHP-DSWNPGWSVSTILTGLLSFMTE 117 (244)
T ss_pred eeCCCCCCccCceeeeEEeCCCCCCCCCCeeEEECCCCc--eecCceEEEeccccCc-CcCCCcccHHHHHHHHHHHHhc
Confidence 689999999999999999999999999999999999532 3345799999999998 8999999999999999999987
Q ss_pred CCCCCh--hh-HHHHHHHHHCHHHHH
Q 037005 81 PNPDDG--LM-CEASQEYKYNRQAFD 103 (334)
Q Consensus 81 PnpdsP--lN-~EAA~lyk~n~eaF~ 103 (334)
-.+... .- ..-.++|+.+..+|+
T Consensus 118 ~~pTtGSI~tS~~~kr~lA~~SlaFN 143 (244)
T KOG0894|consen 118 DSPTTGSIETSDQDKRMLAKSSLAFN 143 (244)
T ss_pred CCCccCcccccHHHHHHHHHhhhhhc
Confidence 665433 11 112345555554444
No 19
>KOG0427 consensus Ubiquitin conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=2.4e-16 Score=136.52 Aligned_cols=76 Identities=39% Similarity=0.866 Sum_probs=72.8
Q ss_pred CCCCCCCCCCCCEEEEEEEcCCCCCCCCCeeEecccc-ccceecCCCCeeeccCCCCCCCCCCCCCCHHHHHHHHHHhhc
Q 037005 1 IEGPEGTVYAKGVFEVKIQIPERYPFQPPSVTFATPI-YHPNIDNGGRICLDILNLPPKGAWQPSLNISTVLTSIGLLLS 79 (334)
Q Consensus 1 I~GP~gTPYEGGiFkf~I~fP~dYP~kPPkVrFlTpI-fHPNVd~~G~ICLdiL~~~~~e~WsPs~TL~sILlsIqsLL~ 79 (334)
+.|-+||.|+|-+|++.+.||+.||+..|.|.|..++ .||+||.+|.|||++| -+.|+|++++.+|.++|.+||.
T Consensus 50 v~Ga~GTLYa~e~~qLq~~F~~~YP~esPqVmF~~~~P~HPHiYSNGHICL~iL----~d~WsPAmsv~SvClSIlSMLS 125 (161)
T KOG0427|consen 50 VTGAPGTLYANETYQLQVEFPEHYPMESPQVMFVGPAPLHPHIYSNGHICLDIL----YDSWSPAMSVQSVCLSILSMLS 125 (161)
T ss_pred EecCCceeecCcEEEEEEecCCCCCCCCCeEEEecCCCCCCceecCCeEEEEee----cccCCcchhhHHHHHHHHHHHc
Confidence 4799999999999999999999999999999999997 8999999999999999 6899999999999999999997
Q ss_pred C
Q 037005 80 E 80 (334)
Q Consensus 80 ~ 80 (334)
.
T Consensus 126 S 126 (161)
T KOG0427|consen 126 S 126 (161)
T ss_pred c
Confidence 5
No 20
>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=7.1e-16 Score=165.99 Aligned_cols=130 Identities=32% Similarity=0.481 Sum_probs=103.4
Q ss_pred CCCCCCCCCCCCEEEEEEEcCCCCCCCCCeeEeccc--cccceecCCCCeeeccCCCCC---CCCCCCCCCHHHHHHHHH
Q 037005 1 IEGPEGTVYAKGVFEVKIQIPERYPFQPPSVTFATP--IYHPNIDNGGRICLDILNLPP---KGAWQPSLNISTVLTSIG 75 (334)
Q Consensus 1 I~GP~gTPYEGGiFkf~I~fP~dYP~kPPkVrFlTp--IfHPNVd~~G~ICLdiL~~~~---~e~WsPs~TL~sILlsIq 75 (334)
|.||++|||..|+|.|+|.||.+||..||.|.+.+. .++||+|++|+||+++|++|. .+-|.|..+|.+||.+||
T Consensus 887 ~~g~~~tpy~~~~f~fd~~~~~~yp~~pp~~~~~s~~~r~npnly~~g~vc~s~l~tw~g~~~e~w~~~s~~lq~l~s~q 966 (1101)
T KOG0895|consen 887 IVGAAGTPYQDGLFFFDFQFPQDYPSSPPLVHYHSGGVRLNPNLYEDGKVCLSLLNTWHGRGNEVWNPSSSILQVLVSIQ 966 (1101)
T ss_pred hhCCCCCccccceEEEEeecCCCCCCCCCceEeecCceeeCcccccccceehhhhccccCCCccccCcchhHHHHHHHhh
Confidence 689999999999999999999999999999999988 489999999999999999997 567999999999999999
Q ss_pred HhhcC--CCCCChh---------hHHHHHHHHHCHHHHHHHHHHHHHHHhcCCCCCCchhhhhhhcccccCC
Q 037005 76 LLLSE--PNPDDGL---------MCEASQEYKYNRQAFDLKARSMTEKYAKTGIGGSQESRLEINETVSTHK 136 (334)
Q Consensus 76 sLL~~--PnpdsPl---------N~EAA~lyk~n~eaF~rkare~tkkyA~~~~~~s~~sk~~~~~~~~~~~ 136 (334)
.|+.+ |-++++. -.+-++.| |..+|...++.++.....++.. ++..+..|+...+
T Consensus 967 ~l~l~~~py~ne~gy~~~~g~~~g~~~s~~y--~~~~~~~~~~~~~~~~~~p~~~----~~e~i~~Hf~~~~ 1032 (1101)
T KOG0895|consen 967 GLVLNEEPYFNEAGYEKQRGTAEGEKNSRVY--NENAFLLTCKSMVYQLRKPPKC----FEEVIHKHFYLRG 1032 (1101)
T ss_pred hhhcccccccCcccccccccccccccccccc--cchhHHHHHHHHHHHhhCCcHH----HHHHHHHHHHHHH
Confidence 99875 4443332 22223334 7778888887777666655433 6666666655444
No 21
>KOG0428 consensus Non-canonical ubiquitin conjugating enzyme 1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=1.7e-15 Score=142.49 Aligned_cols=147 Identities=29% Similarity=0.482 Sum_probs=104.1
Q ss_pred CCCCCCCCCCCCEEEEEEEcCCCCCCCCCeeEeccccccceecCCCCeeeccCCCCCCCCCCCCCCHHHHHHHHHHhhcC
Q 037005 1 IEGPEGTVYAKGVFEVKIQIPERYPFQPPSVTFATPIYHPNIDNGGRICLDILNLPPKGAWQPSLNISTVLTSIGLLLSE 80 (334)
Q Consensus 1 I~GP~gTPYEGGiFkf~I~fP~dYP~kPPkVrFlTpIfHPNVd~~G~ICLdiL~~~~~e~WsPs~TL~sILlsIqsLL~~ 80 (334)
|+||.+|-||||+|+.+|.||.|||++||.+..+|+-.. +..+.+|||+|.+.|| +.|.|.|+|+..|++|..+|-.
T Consensus 46 iRGp~dtdFeGGiYHGRI~lPadYPmKPPs~iLLTpNGR--FE~nkKiCLSISgyHP-EtWqPSWSiRTALlAlIgFmPt 122 (314)
T KOG0428|consen 46 IRGPPDTDFEGGIYHGRIVLPADYPMKPPSIILLTPNGR--FEVNKKICLSISGYHP-ETWQPSWSIRTALLALIGFMPT 122 (314)
T ss_pred eeCCCCCCccCceeeeeEecCCCCCCCCCeEEEEcCCCc--eeeCceEEEEecCCCc-cccCcchhHHHHHHHHHccccC
Confidence 789999999999999999999999999999999998543 4457789999999987 8999999999999999998842
Q ss_pred -CCCCChhhHHHHHHH-HHCHHHHHHHHHHHHHHHhcCCCCCCchhhhhhhcccccCCCCcccccccccCCCCcccccCc
Q 037005 81 -PNPDDGLMCEASQEY-KYNRQAFDLKARSMTEKYAKTGIGGSQESRLEINETVSTHKKPCLINWKLSLDSSSSIQSLGN 158 (334)
Q Consensus 81 -PnpdsPlN~EAA~ly-k~n~eaF~rkare~tkkyA~~~~~~s~~sk~~~~~~~~~~~~p~~~~~~L~l~~ss~~s~~~~ 158 (334)
|+-. -.+-.| .++++...++.++|+.+ .++..+. . -.|.+...+..+ +
T Consensus 123 ~p~GA-----lGSlDYpp~ERr~LAkkS~e~~ck----~cGs~mk--~----------------~llp~~~d~~~~--Q- 172 (314)
T KOG0428|consen 123 KPEGA-----LGSLDYPPEERRALAKKSQEFCCK----GCGSAMK--D----------------VLLPLKSDSDSS--Q- 172 (314)
T ss_pred CCCCc-----cccCcCCHHHHHHHHHhhcccCcc----ccCChhh--h----------------eeeeccCCchHH--H-
Confidence 3211 011122 23455555666555543 2221111 0 123333222222 2
Q ss_pred hhhhHHHHHhcchhhhcccccc
Q 037005 159 DVEVNEMEAKGKQKEVNNTLDE 180 (334)
Q Consensus 159 d~~~~~~~~~~~~~~~~~~~~~ 180 (334)
..++|+++++++++.+.+..++
T Consensus 173 ~~eaK~la~q~~f~~E~~~~~k 194 (314)
T KOG0428|consen 173 AQEAKELARQISFKAEVNSSGK 194 (314)
T ss_pred HHHHHHHhhcCcchhhhccccc
Confidence 2789999999999998887776
No 22
>KOG0429 consensus Ubiquitin-conjugating enzyme-related protein Ft1, involved in programmed cell death [Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=3.2e-14 Score=132.05 Aligned_cols=106 Identities=25% Similarity=0.432 Sum_probs=94.3
Q ss_pred CCCCCCCEEEEEEEcCCCCCC--CCCeeEeccccccceecC-CCCeeeccCCCCCCCCCCCCC-CHHHHHHHHHHhhcCC
Q 037005 6 GTVYAKGVFEVKIQIPERYPF--QPPSVTFATPIYHPNIDN-GGRICLDILNLPPKGAWQPSL-NISTVLTSIGLLLSEP 81 (334)
Q Consensus 6 gTPYEGGiFkf~I~fP~dYP~--kPPkVrFlTpIfHPNVd~-~G~ICLdiL~~~~~e~WsPs~-TL~sILlsIqsLL~~P 81 (334)
.+.|.||+|+|.|.+|++||. .-|+|.|.+.+|||.|.+ ++.+|+.-. ...|+..- +|++||..||.+|++|
T Consensus 59 ~GiyaggVFRFtIliPdnfPdd~dlPrvvF~q~vfHP~icp~skeLdl~ra----f~eWRk~ehhiwqvL~ylqriF~dp 134 (258)
T KOG0429|consen 59 KGIYAGGVFRFTILIPDNFPDDSDLPRVVFEQSVFHPLICPKSKELDLNRA----FPEWRKEEHHIWQVLVYLQRIFYDP 134 (258)
T ss_pred cccccCceEEEEEEcCccCCCcCCCCeEEeeccccccccCCCccceeHhhh----hhhhhccccHHHHHHHHHHHHhcCc
Confidence 368999999999999999995 789999999999999976 899999765 45697665 9999999999999999
Q ss_pred CCCCh--hhHHHHHHHHHCHHHHHHHHHHHHHHHhc
Q 037005 82 NPDDG--LMCEASQEYKYNRQAFDLKARSMTEKYAK 115 (334)
Q Consensus 82 npdsP--lN~EAA~lyk~n~eaF~rkare~tkkyA~ 115 (334)
+-+.+ .|+|||.+|++++++|+++|+++++....
T Consensus 135 d~si~kl~N~eAa~l~~k~r~ef~~rvqe~vk~sr~ 170 (258)
T KOG0429|consen 135 DVSIDKLINPEAAVLYKKHRDEFRERVQECVKASRS 170 (258)
T ss_pred ccchhhhcChHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 98766 59999999999999999999999975443
No 23
>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.16 E-value=3.6e-11 Score=130.27 Aligned_cols=81 Identities=40% Similarity=0.735 Sum_probs=76.1
Q ss_pred CCCCCCCCCCCCEEEEEEEcCCCCCCCCCeeEeccc---cccceecCCCCeeeccCCCCCC---CCCCCC-CCHHHHHHH
Q 037005 1 IEGPEGTVYAKGVFEVKIQIPERYPFQPPSVTFATP---IYHPNIDNGGRICLDILNLPPK---GAWQPS-LNISTVLTS 73 (334)
Q Consensus 1 I~GP~gTPYEGGiFkf~I~fP~dYP~kPPkVrFlTp---IfHPNVd~~G~ICLdiL~~~~~---e~WsPs-~TL~sILls 73 (334)
|.||.||||++|+|.|+|.||..||..||.|.++|. .+.||.|.+|+||+++|.+|.. +.|+|. .+|.++|..
T Consensus 318 Iig~~gtPy~~glf~Fdiq~P~~yPa~pp~v~~lt~~~~R~nPNlYn~GKVcLslLgTwtg~~~e~wtp~~~sl~qvL~s 397 (1101)
T KOG0895|consen 318 IIGPDGTPYADGLFLFDIQFPDTYPAVPPHVKYLTGGGVRLNPNLYNDGKVCLSLLGTWTGSRREKWTPNGSSLLQVLES 397 (1101)
T ss_pred EecCCCCCCcCCceeeEeecCCCCCCCCceeEEeeccceeecCCcccCceEEeeeeeecccccccCCCccccchhhhhhh
Confidence 689999999999999999999999999999999988 5899999999999999999975 789999 799999999
Q ss_pred HHHhhcCC
Q 037005 74 IGLLLSEP 81 (334)
Q Consensus 74 IqsLL~~P 81 (334)
||.++.+-
T Consensus 398 IQ~Li~~e 405 (1101)
T KOG0895|consen 398 IQGLILNE 405 (1101)
T ss_pred hhhhhccc
Confidence 99998753
No 24
>KOG0896 consensus Ubiquitin-conjugating enzyme E2 [Posttranslational modification, protein turnover, chaperones]
Probab=98.69 E-value=2.9e-08 Score=86.44 Aligned_cols=76 Identities=29% Similarity=0.530 Sum_probs=64.4
Q ss_pred CCCCCCCCCCCCEEEEEEEcCCCCCCCCCeeEeccccccceecC-CCCeeeccCCCCCCCCCCCCCCHHHHHHHHHHhh
Q 037005 1 IEGPEGTVYAKGVFEVKIQIPERYPFQPPSVTFATPIYHPNIDN-GGRICLDILNLPPKGAWQPSLNISTVLTSIGLLL 78 (334)
Q Consensus 1 I~GP~gTPYEGGiFkf~I~fP~dYP~kPPkVrFlTpIfHPNVd~-~G~ICLdiL~~~~~e~WsPs~TL~sILlsIqsLL 78 (334)
|.||+.|+||+.+|.++|...++||..||.|+|.+++--+.|.. +|.|.-..+.. -..|+-.+++..+|..++-++
T Consensus 45 IiGPprT~yEnRiysLKI~Cgp~YPe~PP~vrf~tkinm~gvn~~~g~Vd~~~i~~--L~~W~~~y~~~~vl~~lr~~m 121 (138)
T KOG0896|consen 45 IIGPPRTMYENRIYSLKIECGPKYPELPPTVRFGTKINMNGVNSSNGVVDPRDITV--LARWQRSYSIKMVLGQLRKEM 121 (138)
T ss_pred eeCCCCcccccceeeEEEecCCCCCCCCceeEEEEEeeecccccCCCccCccccch--hhcccccchhhHHHHhhhHHH
Confidence 78999999999999999999999999999999999998888854 66665433322 368999999999999997554
No 25
>PF14461 Prok-E2_B: Prokaryotic E2 family B
Probab=98.06 E-value=1.3e-05 Score=68.80 Aligned_cols=67 Identities=27% Similarity=0.709 Sum_probs=58.9
Q ss_pred CCCEEEEEEEcCCCCCCCCCeeEecccc---ccceecCCCCeee---ccCCCCCCCCCCCCCCHHHHHHHHHHhhcC
Q 037005 10 AKGVFEVKIQIPERYPFQPPSVTFATPI---YHPNIDNGGRICL---DILNLPPKGAWQPSLNISTVLTSIGLLLSE 80 (334)
Q Consensus 10 EGGiFkf~I~fP~dYP~kPPkVrFlTpI---fHPNVd~~G~ICL---diL~~~~~e~WsPs~TL~sILlsIqsLL~~ 80 (334)
.|+.|.++|.||++||..||.|....+. +-|||+.+|.||+ ... -+.|.|...+.++|.....+|.+
T Consensus 34 ~~~~~~l~l~~p~~FP~~pp~v~l~d~~~~~~~pHv~~~G~LCl~~~~~~----~D~~~P~~~~~~~l~~a~~lL~~ 106 (133)
T PF14461_consen 34 GGGPFPLRLVFPDDFPYLPPRVYLEDPKQFPLLPHVESDGKLCLLDEELV----LDPWDPEGIIADCLERAIRLLED 106 (133)
T ss_pred CCeEEEEEEEECCcccCcCCEEEecCccccCccCeEcCCCeEEEecCCcc----cCccCHHHHHHHHHHHHHHHHHH
Confidence 5899999999999999999999888654 6799999999999 444 57899999999999999888863
No 26
>PF05743 UEV: UEV domain; InterPro: IPR008883 The N-terminal ubiquitin E2 variant (UEV) domain is ~145 amino acid residues in length and shows significant sequence similarity to E2 ubiquitin ligases but is unable to catalyze ubiquitin transfer as it lacks the active site cysteine that forms the transient thioester bond with the C terminus of ubiquitin (Ub). Nevertheless, at least some UEVs have retained the ability to bind Ub, and appear to act either as cofactors in ubiquitylation reactions, or as ubiquitin sensors. UEV domains also frequently contain other protein recognition motifs, and may generally serve to couple protein and Ub binding functions to facilitate the formation of multiprotein complexes [, , , ]. The UEV domain consists of a twisted four-stranded antiparallel beta-sheet having a meander topology, with four alpha-helices packed against one face of the sheet. The UEV fold is generally similar to canonical E2 ligases in the hydrophobic core and 'active site' regions, but differs significantly at both its N- and C-termini [, ]. The UEV domain is found in the eukaryotic tumour susceptibility gene 101 protein (TSG101). Altered transcripts of this gene have been detected in sporadic breast cancers and many other Homo sapiens malignancies. However, the involvement of this gene in neoplastic transformation and tumourigenesis is still elusive. TSG101 is required for normal cell function of embryonic and adult tissues but this gene is not a tumour suppressor for sporadic forms of breast cancer [].; GO: 0006464 protein modification process, 0015031 protein transport; PDB: 3R3Q_A 3R42_A 1UZX_A 3OBX_A 3OBS_A 3P9H_A 2F0R_A 3P9G_A 3OBQ_A 3OBU_A ....
Probab=97.80 E-value=3.2e-05 Score=65.99 Aligned_cols=67 Identities=28% Similarity=0.622 Sum_probs=48.2
Q ss_pred CCCCCEEE--EEEEcCCCCCCCCCeeEecccc-----ccceecCCCCeeeccCCCCCCCCCCC-CCCHHHHHHHHHHhhc
Q 037005 8 VYAKGVFE--VKIQIPERYPFQPPSVTFATPI-----YHPNIDNGGRICLDILNLPPKGAWQP-SLNISTVLTSIGLLLS 79 (334)
Q Consensus 8 PYEGGiFk--f~I~fP~dYP~kPPkVrFlTpI-----fHPNVd~~G~ICLdiL~~~~~e~WsP-s~TL~sILlsIqsLL~ 79 (334)
.|.|..|. +.|.+|.+||..||.|...... -+.+|+.+|+|.++.| ..|.+ ..+|.+++..|...|.
T Consensus 42 ~y~g~~y~iPi~Iwlp~~yP~~pP~v~v~pt~~m~I~~~~~Vd~~G~v~~pyL-----~~W~~~~s~L~~lv~~l~~~F~ 116 (121)
T PF05743_consen 42 TYKGSTYNIPICIWLPENYPYSPPIVYVRPTPSMVIKPSHHVDSNGRVYLPYL-----QNWNPPSSNLVDLVQELQAVFS 116 (121)
T ss_dssp CCTTCCEEEEEEEEE-TTTTTSSSEEEE-GCCTECCGGCCCB-TTSBB-SHHH-----HT--TTTS-HHHHHHHHHHCCC
T ss_pred ccCCcccceeEEEEEcccCCCCCCEEEEeCCCCCCcCCCCeECCCCCEeCchh-----ccCCCCCCCHHHHHHHHHHHHh
Confidence 47888884 5677899999999999776442 2449999999999999 57877 7799999988888775
No 27
>KOG0897 consensus Predicted ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=97.49 E-value=0.00023 Score=61.04 Aligned_cols=90 Identities=20% Similarity=0.394 Sum_probs=62.8
Q ss_pred EEEEEcCCCCCCCCCeeEecccccc-ceecCCCCeeeccCCCCCCCCCCCCCCHHHHHHHHHHhhcC--CCCCChhhHHH
Q 037005 15 EVKIQIPERYPFQPPSVTFATPIYH-PNIDNGGRICLDILNLPPKGAWQPSLNISTVLTSIGLLLSE--PNPDDGLMCEA 91 (334)
Q Consensus 15 kf~I~fP~dYP~kPPkVrFlTpIfH-PNVd~~G~ICLdiL~~~~~e~WsPs~TL~sILlsIqsLL~~--PnpdsPlN~EA 91 (334)
-+.+.|+.+||+.||.+|...|+-. --|-++|.||..+|. .+.|..+++++.++++|-.++-. -....+++.+.
T Consensus 14 ll~~~f~~~fp~~ppf~rvv~p~~~~Gyvl~ggAIcmellt---~qgwssay~Ve~vi~qiaatlVkG~~ri~~~a~k~s 90 (122)
T KOG0897|consen 14 LLLDIFDDNFPFMPPFPRVVKPLEDEGYVLEGGAICMELLT---KQGWSSAYEVERVIMQIAATLVKGGARIEFPAEKSS 90 (122)
T ss_pred EeeeecccCCCCCCCcceeeeecccCCEEecchhhHHHHHc---cccccchhhHHHHHHHHHHHhhccceeEecCcchhh
Confidence 3457799999999999997766422 123458999999997 68999999999999999998865 23444554443
Q ss_pred HHHHH--HCHHHHHHHHHH
Q 037005 92 SQEYK--YNRQAFDLKARS 108 (334)
Q Consensus 92 A~lyk--~n~eaF~rkare 108 (334)
. +|. .-.+.|...++.
T Consensus 91 k-~~s~~qa~~sfksLv~~ 108 (122)
T KOG0897|consen 91 K-LYSHSQAQQSFKSLVQI 108 (122)
T ss_pred h-HhhHHHHHHHHHHHHHH
Confidence 3 442 233445554443
No 28
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.74 E-value=0.022 Score=56.88 Aligned_cols=76 Identities=22% Similarity=0.489 Sum_probs=57.6
Q ss_pred CCCCCCCCCCEEEE--EEEcCCCCCCCCCeeEeccc-----cccceecCCCCeeeccCCCCCCCCCCCC-CCHHHHHHHH
Q 037005 3 GPEGTVYAKGVFEV--KIQIPERYPFQPPSVTFATP-----IYHPNIDNGGRICLDILNLPPKGAWQPS-LNISTVLTSI 74 (334)
Q Consensus 3 GP~gTPYEGGiFkf--~I~fP~dYP~kPPkVrFlTp-----IfHPNVd~~G~ICLdiL~~~~~e~WsPs-~TL~sILlsI 74 (334)
|---.+|.|.+|.+ .|++.+.||+.||.|..... --|-+|+.+|+|.|+.| .+|.+. +.|..++..|
T Consensus 57 GTIp~~~~G~tYnIPV~iWlldtyP~~pP~c~VnPT~~M~ik~~~hVd~nG~V~LPYL-----h~W~~pssdLv~Liq~l 131 (365)
T KOG2391|consen 57 GTIPVPYQGVTYNIPVIIWLLDTYPYYPPICYVNPTSTMIIKVHEHVDPNGKVYLPYL-----HNWDPPSSDLVGLIQEL 131 (365)
T ss_pred CcccccccCCcccceEEEEecccCCCCCCeEEecCCchhhhHHhhccCCCCeEechhh-----ccCCCccchHHHHHHHH
Confidence 44456899998876 46679999999999855422 14889999999999999 478655 5777777777
Q ss_pred HHhhcCCCC
Q 037005 75 GLLLSEPNP 83 (334)
Q Consensus 75 qsLL~~Pnp 83 (334)
...|.++.|
T Consensus 132 ~a~f~~~pP 140 (365)
T KOG2391|consen 132 IAAFSEDPP 140 (365)
T ss_pred HHHhcCCCc
Confidence 777776444
No 29
>PF14457 Prok-E2_A: Prokaryotic E2 family A
Probab=89.49 E-value=0.49 Score=42.66 Aligned_cols=61 Identities=25% Similarity=0.361 Sum_probs=46.4
Q ss_pred EEEEcCCCCCCCCCeeEeccccc---cceecCC-----CCeeeccCCCCCCCCCCCCCCHHHHHHHHHHhhc
Q 037005 16 VKIQIPERYPFQPPSVTFATPIY---HPNIDNG-----GRICLDILNLPPKGAWQPSLNISTVLTSIGLLLS 79 (334)
Q Consensus 16 f~I~fP~dYP~kPPkVrFlTpIf---HPNVd~~-----G~ICLdiL~~~~~e~WsPs~TL~sILlsIqsLL~ 79 (334)
+.|.|+.+||+.+|.|.++-.-| +|++... ..+|+---. -..|.+..++..+|..|...|.
T Consensus 57 ~~i~~~~~~~~~~P~v~~lR~dFP~~lpH~~~~~~~~p~~lCl~~~~---~~e~~~~~g~~~~l~rl~~Wl~ 125 (162)
T PF14457_consen 57 VAIVFPPDSPLSAPEVPALRKDFPGNLPHQNPGPEGEPVSLCLYEGP---WSEWRPSWGPEGFLDRLFDWLR 125 (162)
T ss_pred EEEEecCCCCCCCccchhhHhhCCCCCCccCCCCCCCCccceEecCC---HHHhhhccCHHHHHHHHHHHHH
Confidence 45789999999999877765532 5777665 679986653 3578899999888888887774
No 30
>PF05773 RWD: RWD domain; InterPro: IPR006575 The RWD eukaryotic domain is found in RING finger (IPR001841 from INTERPRO) and WD repeat (IPR001680 from INTERPRO) containing proteins and DEXDc-like helicase (IPR001410 from INTERPRO) subfamily related to the ubiquitin-conjugating enzymes domain (IPR000608 from INTERPRO). ; GO: 0005515 protein binding; PDB: 2EBM_A 2EBK_A 2DAX_A 2DAW_A 2DAY_A 2DMF_A 1UKX_A 2YZ0_A.
Probab=87.90 E-value=0.49 Score=37.72 Aligned_cols=28 Identities=21% Similarity=0.573 Sum_probs=20.4
Q ss_pred CCCEEEEEEEcCCCCCCCCCeeEecccc
Q 037005 10 AKGVFEVKIQIPERYPFQPPSVTFATPI 37 (334)
Q Consensus 10 EGGiFkf~I~fP~dYP~kPPkVrFlTpI 37 (334)
....+.+.|.||++||..||.|...+..
T Consensus 47 ~~~~~~l~~~~p~~YP~~~P~i~l~~~~ 74 (113)
T PF05773_consen 47 SFPSVTLHFTLPPGYPESPPKISLESPK 74 (113)
T ss_dssp TSEEEEEEEEE-SSTTSS--EEEEEEES
T ss_pred cceeEEEEEeCCCcCCCcCCEEEEEcCC
Confidence 4567899999999999999999866554
No 31
>smart00591 RWD domain in RING finger and WD repeat containing proteins and DEXDc-like helicases subfamily related to the UBCc domain.
Probab=86.07 E-value=0.83 Score=36.21 Aligned_cols=25 Identities=20% Similarity=0.627 Sum_probs=21.0
Q ss_pred CEEEEEEEcCCCCCCCCCeeEeccc
Q 037005 12 GVFEVKIQIPERYPFQPPSVTFATP 36 (334)
Q Consensus 12 GiFkf~I~fP~dYP~kPPkVrFlTp 36 (334)
-.+.+.|.||++||..+|.|.+.+.
T Consensus 41 ~~~~l~~~~p~~YP~~~P~i~~~~~ 65 (107)
T smart00591 41 VSLTLQVKLPENYPDEAPPISLLNS 65 (107)
T ss_pred eEEEEEEECCCCCCCCCCCeEEECC
Confidence 4588899999999999999977653
No 32
>PF14462 Prok-E2_E: Prokaryotic E2 family E
Probab=85.69 E-value=3.5 Score=35.87 Aligned_cols=72 Identities=22% Similarity=0.436 Sum_probs=47.7
Q ss_pred CCCCCCCCEEEEEEEcCCCCCCCCCeeEeccccccceecCCCCe--eeccC--------CCCC--CCCCCCCC-CHHHHH
Q 037005 5 EGTVYAKGVFEVKIQIPERYPFQPPSVTFATPIYHPNIDNGGRI--CLDIL--------NLPP--KGAWQPSL-NISTVL 71 (334)
Q Consensus 5 ~gTPYEGGiFkf~I~fP~dYP~kPPkVrFlTpIfHPNVd~~G~I--CLdiL--------~~~~--~e~WsPs~-TL~sIL 71 (334)
+.+.|.+..-.+-|.+|..||..+|.+-+..|-.... ..|.| |-... +.|+ ...|+|.. +|.+.|
T Consensus 35 P~G~y~~~~~dili~iP~gYP~~~~DmfY~~P~L~~~--~G~~iP~~~~~~~~~~G~~wQrWSRH~~~W~P~~D~l~T~l 112 (122)
T PF14462_consen 35 PEGKYNHNEVDILILIPPGYPDAPLDMFYVYPPLKLA--DGGPIPNAAEVTQTFDGRTWQRWSRHNNPWRPGVDDLWTHL 112 (122)
T ss_pred CCCccCccceEEEEECCCCCCCCCCCcEEECCceEcc--CCCcCCchhcchhhcCCeeeeeecCCCCCCCCCCCcHHHHH
Confidence 4556999999999999999999999887776632210 11222 22111 1111 46799987 888888
Q ss_pred HHHHHhh
Q 037005 72 TSIGLLL 78 (334)
Q Consensus 72 lsIqsLL 78 (334)
.-|...|
T Consensus 113 ~~v~~~L 119 (122)
T PF14462_consen 113 ARVEHAL 119 (122)
T ss_pred HHHHHHH
Confidence 8887665
No 33
>PF08694 UFC1: Ubiquitin-fold modifier-conjugating enzyme 1; InterPro: IPR014806 Ubiquitin-like (UBL) post-translational modifiers are covalently linked to most, if not all, target protein(s) through an enzymatic cascade analogous to ubiquitylation, consisting of E1 (activating), E2 (conjugating), and E3 (ligating) enzymes. Ubiquitin-fold modifier 1 (Ufm1) a ubiquitin-like protein is activated by a novel E1-like enzyme, Uba5, by forming a high-energy thioester bond. Activated Ufm1 is then transferred to its cognate E2-like enzyme, Ufc1, in a similar thioester linkage. This family represents the E2-like enzyme [].; PDB: 2Z6P_A 2K07_A 2Z6O_A 3EVX_D 3KPA_A.
Probab=83.63 E-value=1.1 Score=40.31 Aligned_cols=55 Identities=29% Similarity=0.653 Sum_probs=24.2
Q ss_pred EEEEEEcCCCCCCCCCeeEecccc-ccceecCCCCeeeccCCCCCCCCC---CCCCCHHHHH
Q 037005 14 FEVKIQIPERYPFQPPSVTFATPI-YHPNIDNGGRICLDILNLPPKGAW---QPSLNISTVL 71 (334)
Q Consensus 14 Fkf~I~fP~dYP~kPPkVrFlTpI-fHPNVd~~G~ICLdiL~~~~~e~W---sPs~TL~sIL 71 (334)
|.|.+.+|..||..||.|..-.-- --.-.|-.|+||++.- + ..-| .|.++|.+.|
T Consensus 77 F~~eFdIP~tYP~t~pEi~lPeLdGKTaKMYRGGkIClt~H-F--kPLWakN~PkfGIaHal 135 (161)
T PF08694_consen 77 FDLEFDIPVTYPTTAPEIALPELDGKTAKMYRGGKICLTDH-F--KPLWAKNVPKFGIAHAL 135 (161)
T ss_dssp EEEEEE--TTTTTS----B-GGGTTT-SSBCCCCBB---TT-H--HHHHHCTTTT--HHHHH
T ss_pred EeeecCCCccCCCCCcceeccccCCchhhhhcCceEeeecc-c--chhhhhcCCchhHHHHH
Confidence 445566799999999998653110 0112346899999763 2 2235 5667777765
No 34
>PF14460 Prok-E2_D: Prokaryotic E2 family D
Probab=54.59 E-value=14 Score=33.25 Aligned_cols=45 Identities=18% Similarity=0.306 Sum_probs=26.1
Q ss_pred ccccc---ceecCCCCeeeccCCCCCCCCCCCCCCHHHHHHHHHHhhcCCCCCCh
Q 037005 35 TPIYH---PNIDNGGRICLDILNLPPKGAWQPSLNISTVLTSIGLLLSEPNPDDG 86 (334)
Q Consensus 35 TpIfH---PNVd~~G~ICLdiL~~~~~e~WsPs~TL~sILlsIqsLL~~PnpdsP 86 (334)
|++|| +||+.+|+||+.... .|.......+..+...|.+-...++
T Consensus 90 T~Ly~aPf~NV~~~g~vC~G~~~-------~P~~~~~~~i~~we~~Ff~S~ftH~ 137 (175)
T PF14460_consen 90 TPLYHAPFFNVYSNGSVCWGNNS-------LPKISTLASIEAWEDAFFNSPFTHP 137 (175)
T ss_pred CeeEeCCccccCCCCcEeeCCCc-------CCCccCHHHHHHHHHHHhCCCccCC
Confidence 55555 589999999996653 2444344445555544443333333
No 35
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=36.24 E-value=83 Score=31.90 Aligned_cols=34 Identities=21% Similarity=0.478 Sum_probs=29.5
Q ss_pred CCCCCEEEEEEEcCCCCCCCCCeeEec-cccccce
Q 037005 8 VYAKGVFEVKIQIPERYPFQPPSVTFA-TPIYHPN 41 (334)
Q Consensus 8 PYEGGiFkf~I~fP~dYP~kPPkVrFl-TpIfHPN 41 (334)
||.|-..+-+|.|...||..||-+.|- ..-|+|.
T Consensus 61 Py~~~~l~W~viFd~~~p~~pPDfiF~eD~~F~pd 95 (333)
T PF06113_consen 61 PYCGEYLKWDVIFDAQYPEFPPDFIFGEDDNFLPD 95 (333)
T ss_pred eccCCEEEEEEEEcCCCCCCCCCEEeCCCcCcCCC
Confidence 788899999999999999999999996 3358874
No 36
>KOG3357 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.86 E-value=40 Score=30.24 Aligned_cols=64 Identities=30% Similarity=0.650 Sum_probs=37.7
Q ss_pred CCCCCCCCCE----------EEEEEEcCCCCCCCCCeeEeccccc--cceecCCCCeeeccCCCCCCCCC---CCCCCHH
Q 037005 4 PEGTVYAKGV----------FEVKIQIPERYPFQPPSVTFATPIY--HPNIDNGGRICLDILNLPPKGAW---QPSLNIS 68 (334)
Q Consensus 4 P~gTPYEGGi----------Fkf~I~fP~dYP~kPPkVrFlTpIf--HPNVd~~G~ICLdiL~~~~~e~W---sPs~TL~ 68 (334)
++||-|-|.. |-+.+.+|-.||...|.+..- .+- ---.|..|+|||.-- + +.-| .|.++|.
T Consensus 60 ~egtrwfgkcwy~hnllkyefdvefdipityp~tapeialp-eldgktakmyrggkiclt~h-f--kplwarn~pkfgia 135 (167)
T KOG3357|consen 60 KEGTRWFGKCWYVHNLLKYEFDVEFDIPITYPTTAPEIALP-ELDGKTAKMYRGGKICLTDH-F--KPLWARNVPKFGIA 135 (167)
T ss_pred ccccceehhhhHhhhhhhheeeeeeccccccCCCCcccccc-ccCchhhhhhcCceEeeccc-c--chhhhhcCcchhHH
Confidence 5566666553 444556799999999988532 110 011245799999543 1 3456 4555666
Q ss_pred HHH
Q 037005 69 TVL 71 (334)
Q Consensus 69 sIL 71 (334)
+.+
T Consensus 136 ha~ 138 (167)
T KOG3357|consen 136 HAM 138 (167)
T ss_pred HHH
Confidence 543
No 37
>cd00421 intradiol_dioxygenase Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. This family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases which are mononuclear non-heme iron enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings. The members are intradiol-cleaving enzymes which break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. Catechol 1,2-dioxygenases are mostly homodimers with one catalytic ferric ion per monomer. Protocatechuate 3,4-dioxygenases form more diverse oligomers.
Probab=31.65 E-value=55 Score=28.56 Aligned_cols=26 Identities=31% Similarity=0.682 Sum_probs=23.2
Q ss_pred CCCEEEEEEEcCCCCC-CCCCeeEecc
Q 037005 10 AKGVFEVKIQIPERYP-FQPPSVTFAT 35 (334)
Q Consensus 10 EGGiFkf~I~fP~dYP-~kPPkVrFlT 35 (334)
+.|.|.|.-.+|--|| ..||.|+|.-
T Consensus 64 ~~G~y~f~ti~Pg~Y~~~R~~HiH~~V 90 (146)
T cd00421 64 ADGRYRFRTIKPGPYPIGRPPHIHFKV 90 (146)
T ss_pred CCcCEEEEEEcCCCCCCCCCCEEEEEE
Confidence 4699999999999999 9999998863
No 38
>cd03457 intradiol_dioxygenase_like Intradiol dioxygenase supgroup. Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. They break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. The family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases. The specific function of this subgroup is unknown.
Probab=29.70 E-value=59 Score=29.97 Aligned_cols=26 Identities=27% Similarity=0.489 Sum_probs=23.4
Q ss_pred CCCEEEEEEEcCCCCCCCCCeeEecc
Q 037005 10 AKGVFEVKIQIPERYPFQPPSVTFAT 35 (334)
Q Consensus 10 EGGiFkf~I~fP~dYP~kPPkVrFlT 35 (334)
+.|.|.|+-.+|--||..||-|+|.-
T Consensus 85 ~~G~~~F~TI~PG~Y~gR~~HIH~~V 110 (188)
T cd03457 85 ADGVVTFTTIFPGWYPGRATHIHFKV 110 (188)
T ss_pred CCccEEEEEECCCCCCCCCceEEEEE
Confidence 56999999999999999999998864
No 39
>KOG4018 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=28.40 E-value=48 Score=31.66 Aligned_cols=19 Identities=26% Similarity=0.578 Sum_probs=18.0
Q ss_pred EEEEEEEcCCCCCCCCCee
Q 037005 13 VFEVKIQIPERYPFQPPSV 31 (334)
Q Consensus 13 iFkf~I~fP~dYP~kPPkV 31 (334)
.|.+.+.++++||..+|.+
T Consensus 50 ~~~l~~s~tEnYPDe~Pli 68 (215)
T KOG4018|consen 50 SFILVFSLTENYPDEAPLI 68 (215)
T ss_pred cEEEEEEccCCCCCCCcce
Confidence 7889999999999999999
No 40
>TIGR03737 PRTRC_B PRTRC system protein B. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This protein family is designated protein B.
Probab=23.48 E-value=1e+02 Score=29.52 Aligned_cols=42 Identities=17% Similarity=0.271 Sum_probs=27.1
Q ss_pred ccccc---ceecCCCCeeeccCCCCCCCCCCCCC-CHHHHHHHHHHhhcCCCCC
Q 037005 35 TPIYH---PNIDNGGRICLDILNLPPKGAWQPSL-NISTVLTSIGLLLSEPNPD 84 (334)
Q Consensus 35 TpIfH---PNVd~~G~ICLdiL~~~~~e~WsPs~-TL~sILlsIqsLL~~Pnpd 84 (334)
|++|| .||+++|+||+-... .|.. ++.+ +......|++-.+.
T Consensus 131 T~L~~aPffNV~~~G~VC~G~~~-------~P~~~~~~~-i~~we~~FF~S~FT 176 (228)
T TIGR03737 131 TKLYQAPLFNVWSNGEICAGNAR-------LPDRPTVAN-ISAWEDAFFSSRFT 176 (228)
T ss_pred CeeccCCcCccCCCCeEeeCCCc-------CCCCcCHHH-HHHHHHHHhCCccc
Confidence 44554 489999999996652 3444 6666 77777766653333
No 41
>cd03459 3,4-PCD Protocatechuate 3,4-dioxygenase (3,4-PCD) catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=22.33 E-value=1e+02 Score=27.67 Aligned_cols=26 Identities=23% Similarity=0.636 Sum_probs=23.0
Q ss_pred CCCEEEEEEEcCCCCC-----CCCCeeEecc
Q 037005 10 AKGVFEVKIQIPERYP-----FQPPSVTFAT 35 (334)
Q Consensus 10 EGGiFkf~I~fP~dYP-----~kPPkVrFlT 35 (334)
+.|.|.|.-.+|--|| ..||-|.|.-
T Consensus 71 ~~G~~~f~Ti~Pg~Y~~p~~~~R~~HIH~~V 101 (158)
T cd03459 71 ADGRYRFRTIKPGAYPWRNGAWRAPHIHVSV 101 (158)
T ss_pred CCCcEEEEEECCCCcCCCCCCCcCCEEEEEE
Confidence 4689999999999999 8999998864
Done!