BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037006
(541 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 128 bits (321), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 98/318 (30%), Positives = 149/318 (46%), Gaps = 14/318 (4%)
Query: 174 QTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPXXXXXXXXXXXXXXXXXXRKAST 233
QT LH A ++V+LLLE + G TP ++AS
Sbjct: 81 QTPLHCAARIGHTNMVKLLLENNANPNLATTAG-HTPLHIAAREGHVETVLALLEKEASQ 139
Query: 234 ERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEXXXXXXXXXXX 293
+ P+H+A + G + V +LLL + A+ NA K+G T LH+AV
Sbjct: 140 ACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLL 199
Query: 294 XNGARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHS 353
G P A +G TPLHI A ++ + LLQ G + + G T +AA+ GH+
Sbjct: 200 PRGGSPH-SPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHA 258
Query: 354 RLFDAL-------KLGDS-----LCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRA 401
+ L LG+ L + A++G V LI+ G ++ G+T LH A
Sbjct: 259 EMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVA 318
Query: 402 SFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNV 461
S G I++V+ L+ DV+AK + GY+ LH A + GHTD+ LL+K GA +S
Sbjct: 319 SHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGT 378
Query: 462 SPMQIAECLHYAGISRIL 479
+P+ IA+ L Y ++ +L
Sbjct: 379 TPLAIAKRLGYISVTDVL 396
Score = 117 bits (292), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 89/295 (30%), Positives = 128/295 (43%), Gaps = 48/295 (16%)
Query: 229 RKASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEXXXXXX 288
R AS S P+H+A R GH EV K LL A VNA KD T LH A
Sbjct: 36 RGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNM 95
Query: 289 XXXXXXNGARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAA 348
N A P++ G TPLHI A G+ + V LL+K A++ K G T VAA
Sbjct: 96 VKLLLENNANPNLATTA-GHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAA 154
Query: 349 ECG------------------------------HSRLFDALKL----GDS---------- 364
+ G H D +KL G S
Sbjct: 155 KYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYT 214
Query: 365 -LCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAK 423
L +AA++ +V + L++ G + N + + G T LH A+ +G E+V +L+ K + +
Sbjct: 215 PLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLG 274
Query: 424 DEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYAGISRI 478
++ G T LH + GH V ++L+K G V+A T +P+ +A HY I +
Sbjct: 275 NKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVAS--HYGNIKLV 327
Score = 107 bits (268), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 82/287 (28%), Positives = 133/287 (46%), Gaps = 28/287 (9%)
Query: 243 PIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEXXXXXXXXXXXXNGARPDIR 302
P+H+A GHL ++K LL +GA+ N T LH+A N A+ + +
Sbjct: 17 PLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAK 76
Query: 303 NARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLG 362
A+D TPLH A +G+ MVKLLL+ AN ++A GH+ L
Sbjct: 77 -AKDDQTPLHCAARIGHTNMVKLLLENNANP-----------NLATTAGHTPLH------ 118
Query: 363 DSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDA 422
+AAR+G V T+ L+E A+ G+T LH A+ GK+ V +L+++ +A
Sbjct: 119 ----IAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNA 174
Query: 423 KDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYAGISRILMH- 481
++G T LH AV + D+ +LL+ +G + +P+ IA + ++R L+
Sbjct: 175 AGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQY 234
Query: 482 -GGATKDGIQQTNLRQVSIQFGNGKVG----RDQMEGKFGMKKKKLP 523
G A + +Q ++ Q G+ ++ Q G G K P
Sbjct: 235 GGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTP 281
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 60/193 (31%), Positives = 81/193 (41%), Gaps = 2/193 (1%)
Query: 167 DSADAQGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPXXXXXXXXXXXXXXXX 226
++A G T LH+A+ DIV+LLL G S G TP
Sbjct: 173 NAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGY-TPLHIAAKQNQVEVARSL 231
Query: 227 XXRKASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEXXXX 286
S P+HLA + GH E++ LLL K AN N K G T LHL +
Sbjct: 232 LQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHV 291
Query: 287 XXXXXXXXNGARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDV 346
+G D R G TPLH+ + G ++VK LLQ A+ + K G +
Sbjct: 292 PVADVLIKHGVMVD-ATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQ 350
Query: 347 AAECGHSRLFDAL 359
AA+ GH+ + L
Sbjct: 351 AAQQGHTDIVTLL 363
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 59/222 (26%), Positives = 96/222 (43%), Gaps = 14/222 (6%)
Query: 144 VKDGEMDDLREVLERS----DPAWNPADSADAQGQTLLHIAIAQRRPDIVQLLLEFGPDV 199
V +D ++ +L R PAWN G T LHIA Q + ++ + LL++G
Sbjct: 187 VHHNNLDIVKLLLPRGGSPHSPAWN--------GYTPLHIAAKQNQVEVARSLLQYGGSA 238
Query: 200 ESQGRCGCSTPXXXXXXXXXXXXXXXXXXRKASTERSETSTWGPIHLALRGGHLEVLKLL 259
++ G TP ++A+ S P+HL + GH+ V +L
Sbjct: 239 NAESVQGV-TPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVL 297
Query: 260 LIKGANVNALTKDGNTALHLAVEXXXXXXXXXXXXNGARPDIRNARDGDTPLHITASLGY 319
+ G V+A T+ G T LH+A + A + + + G +PLH A G+
Sbjct: 298 IKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKT-KLGYSPLHQAAQQGH 356
Query: 320 EQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKL 361
+V LLL+ GA+ + G T +A G+ + D LK+
Sbjct: 357 TDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKV 398
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 49/92 (53%)
Query: 396 TALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEA 455
T LH ASF G + +V+ L+ +G + + T LH A +GHT+V + L++ A V A
Sbjct: 16 TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNA 75
Query: 456 RTSKNVSPMQIAECLHYAGISRILMHGGATKD 487
+ + +P+ A + + + ++L+ A +
Sbjct: 76 KAKDDQTPLHCAARIGHTNMVKLLLENNANPN 107
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 105 bits (261), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 58/146 (39%), Positives = 90/146 (61%), Gaps = 21/146 (14%)
Query: 306 DGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSL 365
+G TPLH+ A G+ ++VKLLL+ GA+ ++K+G+T L
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRT---------------------PL 39
Query: 366 CVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDE 425
+AAR G + ++ L+EAGA +N KD +G T LH A+ G +EVV++L++ G DV+AKD+
Sbjct: 40 HLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDK 99
Query: 426 DGYTALHCAVESGHTDVTELLVKKGA 451
+G T LH A +GH +V +LL++ GA
Sbjct: 100 NGRTPLHLAARNGHLEVVKLLLEAGA 125
Score = 98.6 bits (244), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 49/120 (40%), Positives = 79/120 (65%)
Query: 365 LCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKD 424
L +AAR G + ++ L+EAGA +N KD +G T LH A+ G +EVV++L++ G DV+AKD
Sbjct: 6 LHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKD 65
Query: 425 EDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYAGISRILMHGGA 484
++G T LH A +GH +V +LL++ GADV A+ +P+ +A + + ++L+ GA
Sbjct: 66 KNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 125
Score = 83.6 bits (205), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 49/110 (44%), Positives = 69/110 (62%), Gaps = 1/110 (0%)
Query: 243 PIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEXXXXXXXXXXXXNGARPDIR 302
P+HLA R GHLEV+KLLL GA+VNA K+G T LHLA GA + +
Sbjct: 5 PLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAK 64
Query: 303 NARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGH 352
+ ++G TPLH+ A G+ ++VKLLL+ GA+ ++K+G+T +AA GH
Sbjct: 65 D-KNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGH 113
Score = 79.0 bits (193), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 56/160 (35%), Positives = 79/160 (49%), Gaps = 35/160 (21%)
Query: 172 QGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPXXXXXXXXXXXXXXXXXXRKA 231
G+T LH+A ++V+LLLE G DV ++ + G +
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRT----------------------- 37
Query: 232 STERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEXXXXXXXXX 291
P+HLA R GHLEV+KLLL GA+VNA K+G T LHLA
Sbjct: 38 -----------PLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKL 86
Query: 292 XXXNGARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGA 331
GA + ++ ++G TPLH+ A G+ ++VKLLL+ GA
Sbjct: 87 LLEAGADVNAKD-KNGRTPLHLAARNGHLEVVKLLLEAGA 125
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 36/91 (39%), Positives = 59/91 (64%)
Query: 394 GWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADV 453
G T LH A+ G +EVV++L++ G DV+AKD++G T LH A +GH +V +LL++ GADV
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61
Query: 454 EARTSKNVSPMQIAECLHYAGISRILMHGGA 484
A+ +P+ +A + + ++L+ GA
Sbjct: 62 NAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 62/129 (48%), Gaps = 5/129 (3%)
Query: 136 GSPVLVLLVKDGEMDDLREVLERSDPAWNPADSADAQGQTLLHIAIAQRRPDIVQLLLEF 195
G L L ++G ++ ++ +LE A ++ D G+T LH+A ++V+LLLE
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLE----AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA 57
Query: 196 GPDVESQGRCGCSTPXXXXXXXXXXXXXXXXXXRKASTERSETSTWGPIHLALRGGHLEV 255
G DV ++ + G TP A + + P+HLA R GHLEV
Sbjct: 58 GADVNAKDKNG-RTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEV 116
Query: 256 LKLLLIKGA 264
+KLLL GA
Sbjct: 117 VKLLLEAGA 125
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 99.4 bits (246), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 57/146 (39%), Positives = 85/146 (58%), Gaps = 4/146 (2%)
Query: 361 LGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDV 420
LG L AAR G+ ++ L+ GA +N KD G+T LH A+ +G +E+V +L+ G DV
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADV 73
Query: 421 DAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYAGISRILM 480
+AKD+DGYT LH A GH ++ E+L+K GADV A+ +P+ +A + I +L+
Sbjct: 74 NAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLL 133
Query: 481 HGGA---TKDGIQQTNLRQVSIQFGN 503
GA +D +T +SI GN
Sbjct: 134 KAGADVNAQDKFGKTAF-DISIDNGN 158
Score = 89.7 bits (221), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 91/152 (59%), Gaps = 22/152 (14%)
Query: 295 NGARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSR 354
NGA + ++ +DG TPLH+ A G+ ++V++LL+ GA+ ++K G T
Sbjct: 36 NGADVNAKD-KDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYT------------ 82
Query: 355 LFDALKLGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLI 414
L +AAR+G + ++ L++AGA +N KD G+T LH A+ +G +E+V +L+
Sbjct: 83 ---------PLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLL 133
Query: 415 DKGIDVDAKDEDGYTALHCAVESGHTDVTELL 446
G DV+A+D+ G TA ++++G+ D+ E+L
Sbjct: 134 KAGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 49/130 (37%), Positives = 78/130 (60%), Gaps = 1/130 (0%)
Query: 231 ASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEXXXXXXXX 290
A + + P+HLA R GHLE++++LL GA+VNA KDG T LHLA
Sbjct: 38 ADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVE 97
Query: 291 XXXXNGARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAEC 350
GA + ++ +DG TPLH+ A G+ ++V++LL+ GA+ ++K GKTA+D++ +
Sbjct: 98 VLLKAGADVNAKD-KDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTAFDISIDN 156
Query: 351 GHSRLFDALK 360
G+ L + L+
Sbjct: 157 GNEDLAEILQ 166
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 84/167 (50%), Gaps = 22/167 (13%)
Query: 247 ALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEXXXXXXXXXXXXNGARPDIRNARD 306
A R G + +++L+ GA+VNA KDG T LHLA GA + ++ +D
Sbjct: 21 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKD-KD 79
Query: 307 GDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSLC 366
G TPLH+ A G+ ++V++LL+ GA+ ++K G T L
Sbjct: 80 GYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYT---------------------PLH 118
Query: 367 VAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRML 413
+AAR+G + ++ L++AGA +N +D G TA + G ++ +L
Sbjct: 119 LAAREGHLEIVEVLLKAGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 61/129 (47%), Gaps = 34/129 (26%)
Query: 154 EVLERSDPAWNPADSADAQGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPXXX 213
E++E A ++ D G T LH+A + +IV++LL+ G DV ++ + G
Sbjct: 61 EIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDG------- 113
Query: 214 XXXXXXXXXXXXXXXRKASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDG 273
+ P+HLA R GHLE++++LL GA+VNA K G
Sbjct: 114 ---------------------------YTPLHLAAREGHLEIVEVLLKAGADVNAQDKFG 146
Query: 274 NTALHLAVE 282
TA ++++
Sbjct: 147 KTAFDISID 155
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 98.6 bits (244), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 57/166 (34%), Positives = 91/166 (54%), Gaps = 21/166 (12%)
Query: 314 TASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSLCVAARKGE 373
A G + V++L+ GA+ ++K G T L +AAR+G
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDGYT---------------------PLHLAAREGH 47
Query: 374 VRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHC 433
+ ++ L++AGA +N KD G+T LH A+ +G +E+V +L+ G DV+AKD+DGYT LH
Sbjct: 48 LEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHL 107
Query: 434 AVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYAGISRIL 479
A GH ++ E+L+K GADV A+ +P +A + I+ +L
Sbjct: 108 AAREGHLEIVEVLLKAGADVNAQDKFGKTPFDLAIREGHEDIAEVL 153
Score = 98.2 bits (243), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 51/124 (41%), Positives = 76/124 (61%)
Query: 361 LGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDV 420
LG L AAR G+ ++ L+ GA +N KD G+T LH A+ +G +E+V +L+ G DV
Sbjct: 2 LGKKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADV 61
Query: 421 DAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYAGISRILM 480
+AKD+DGYT LH A GH ++ E+L+K GADV A+ +P+ +A + I +L+
Sbjct: 62 NAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLL 121
Query: 481 HGGA 484
GA
Sbjct: 122 KAGA 125
Score = 91.7 bits (226), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 54/154 (35%), Positives = 89/154 (57%), Gaps = 22/154 (14%)
Query: 295 NGARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSR 354
NGA + ++ +DG TPLH+ A G+ ++V++LL+ GA+ ++K G T
Sbjct: 24 NGADVNAKD-KDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYT------------ 70
Query: 355 LFDALKLGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLI 414
L +AAR+G + ++ L++AGA +N KD G+T LH A+ +G +E+V +L+
Sbjct: 71 ---------PLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLL 121
Query: 415 DKGIDVDAKDEDGYTALHCAVESGHTDVTELLVK 448
G DV+A+D+ G T A+ GH D+ E+L K
Sbjct: 122 KAGADVNAQDKFGKTPFDLAIREGHEDIAEVLQK 155
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 49/130 (37%), Positives = 76/130 (58%), Gaps = 1/130 (0%)
Query: 231 ASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEXXXXXXXX 290
A + + P+HLA R GHLE++++LL GA+VNA KDG T LHLA
Sbjct: 26 ADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVE 85
Query: 291 XXXXNGARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAEC 350
GA + ++ +DG TPLH+ A G+ ++V++LL+ GA+ ++K GKT +D+A
Sbjct: 86 VLLKAGADVNAKD-KDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTPFDLAIRE 144
Query: 351 GHSRLFDALK 360
GH + + L+
Sbjct: 145 GHEDIAEVLQ 154
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 84/167 (50%), Gaps = 22/167 (13%)
Query: 247 ALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEXXXXXXXXXXXXNGARPDIRNARD 306
A R G + +++L+ GA+VNA KDG T LHLA GA + ++ +D
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKD-KD 67
Query: 307 GDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSLC 366
G TPLH+ A G+ ++V++LL+ GA+ ++K G T L
Sbjct: 68 GYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYT---------------------PLH 106
Query: 367 VAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRML 413
+AAR+G + ++ L++AGA +N +D G T A +G ++ +L
Sbjct: 107 LAAREGHLEIVEVLLKAGADVNAQDKFGKTPFDLAIREGHEDIAEVL 153
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 59/128 (46%), Gaps = 34/128 (26%)
Query: 154 EVLERSDPAWNPADSADAQGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPXXX 213
E++E A ++ D G T LH+A + +IV++LL+ G DV ++ + G
Sbjct: 49 EIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDG------- 101
Query: 214 XXXXXXXXXXXXXXXRKASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDG 273
+ P+HLA R GHLE++++LL GA+VNA K G
Sbjct: 102 ---------------------------YTPLHLAAREGHLEIVEVLLKAGADVNAQDKFG 134
Query: 274 NTALHLAV 281
T LA+
Sbjct: 135 KTPFDLAI 142
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 98.2 bits (243), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 51/124 (41%), Positives = 76/124 (61%)
Query: 361 LGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDV 420
LG L AAR G+ ++ L+ GA +N KD G+T LH A+ +G +E+V +L+ G DV
Sbjct: 2 LGKKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADV 61
Query: 421 DAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYAGISRILM 480
+AKD+DGYT LH A GH ++ E+L+K GADV A+ +P+ +A + I +L+
Sbjct: 62 NAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLL 121
Query: 481 HGGA 484
GA
Sbjct: 122 KAGA 125
Score = 90.1 bits (222), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 53/154 (34%), Positives = 91/154 (59%), Gaps = 22/154 (14%)
Query: 295 NGARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSR 354
NGA + ++ +DG TPLH+ A G+ ++V++LL+ GA+ ++K G T
Sbjct: 24 NGADVNAKD-KDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYT------------ 70
Query: 355 LFDALKLGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLI 414
L +AAR+G + ++ L++AGA +N KD G+T LH A+ +G +E+V +L+
Sbjct: 71 ---------PLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLL 121
Query: 415 DKGIDVDAKDEDGYTALHCAVESGHTDVTELLVK 448
G DV+A+D+ G T A+++G+ D+ E+L K
Sbjct: 122 KAGADVNAQDKFGKTPFDLAIDNGNEDIAEVLQK 155
Score = 85.1 bits (209), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 48/130 (36%), Positives = 77/130 (59%), Gaps = 1/130 (0%)
Query: 231 ASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEXXXXXXXX 290
A + + P+HLA R GHLE++++LL GA+VNA KDG T LHLA
Sbjct: 26 ADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVE 85
Query: 291 XXXXNGARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAEC 350
GA + ++ +DG TPLH+ A G+ ++V++LL+ GA+ ++K GKT +D+A +
Sbjct: 86 VLLKAGADVNAKD-KDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTPFDLAIDN 144
Query: 351 GHSRLFDALK 360
G+ + + L+
Sbjct: 145 GNEDIAEVLQ 154
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 83/167 (49%), Gaps = 22/167 (13%)
Query: 247 ALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEXXXXXXXXXXXXNGARPDIRNARD 306
A R G + +++L+ GA+VNA KDG T LHLA GA + ++ +D
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKD-KD 67
Query: 307 GDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSLC 366
G TPLH+ A G+ ++V++LL+ GA+ ++K G T L
Sbjct: 68 GYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYT---------------------PLH 106
Query: 367 VAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRML 413
+AAR+G + ++ L++AGA +N +D G T A G ++ +L
Sbjct: 107 LAAREGHLEIVEVLLKAGADVNAQDKFGKTPFDLAIDNGNEDIAEVL 153
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 60/129 (46%), Gaps = 34/129 (26%)
Query: 154 EVLERSDPAWNPADSADAQGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPXXX 213
E++E A ++ D G T LH+A + +IV++LL+ G DV ++ + G
Sbjct: 49 EIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDG------- 101
Query: 214 XXXXXXXXXXXXXXXRKASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDG 273
+ P+HLA R GHLE++++LL GA+VNA K G
Sbjct: 102 ---------------------------YTPLHLAAREGHLEIVEVLLKAGADVNAQDKFG 134
Query: 274 NTALHLAVE 282
T LA++
Sbjct: 135 KTPFDLAID 143
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 98.2 bits (243), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 62/150 (41%), Positives = 87/150 (58%), Gaps = 4/150 (2%)
Query: 360 KLGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGID 419
+LG L AA G ++ LIE GA +N D G T LH A+ G EVV++LI KG D
Sbjct: 3 ELGKRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGAD 62
Query: 420 VDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYAGISRIL 479
V+AKD DG T LH A E+GH +V +LL+ KGADV A+ S +P+ A + + ++L
Sbjct: 63 VNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLL 122
Query: 480 MHGGA---TKDGIQQTNLRQVSIQFGNGKV 506
+ GA T D +T L ++ + GN +V
Sbjct: 123 ISKGADVNTSDSDGRTPL-DLAREHGNEEV 151
Score = 91.7 bits (226), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 61/160 (38%), Positives = 86/160 (53%), Gaps = 22/160 (13%)
Query: 295 NGARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSR 354
NGA + ++ DG TPLH A G++++VKLL+ KGA+ ++ G+T AAE GH
Sbjct: 26 NGADVNASDS-DGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKE 84
Query: 355 LFDALKLGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLI 414
+ ++ LI GA +N KD G T LH A+ G EVV++LI
Sbjct: 85 V---------------------VKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLI 123
Query: 415 DKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVE 454
KG DV+ D DG T L A E G+ +V +LL K+G +E
Sbjct: 124 SKGADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQGGWLE 163
Score = 80.1 bits (196), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 49/130 (37%), Positives = 71/130 (54%), Gaps = 1/130 (0%)
Query: 231 ASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEXXXXXXXX 290
A S++ P+H A GH EV+KLL+ KGA+VNA DG T LH A E
Sbjct: 28 ADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVK 87
Query: 291 XXXXNGARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAEC 350
GA + +++ DG TPLH A G++++VKLL+ KGA+ + G+T D+A E
Sbjct: 88 LLISKGADVNAKDS-DGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREH 146
Query: 351 GHSRLFDALK 360
G+ + L+
Sbjct: 147 GNEEVVKLLE 156
Score = 72.0 bits (175), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 81/171 (47%), Gaps = 22/171 (12%)
Query: 247 ALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEXXXXXXXXXXXXNGARPDIRNARD 306
A G+ + +K L+ GA+VNA DG T LH A E GA + +++ D
Sbjct: 11 AAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDS-D 69
Query: 307 GDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSLC 366
G TPLH A G++++VKLL+ KGA+ ++ G+T AAE GH +
Sbjct: 70 GRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEV----------- 118
Query: 367 VAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKG 417
++ LI GA +N D G T L A G EVV++L +G
Sbjct: 119 ----------VKLLISKGADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQG 159
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 57/193 (29%), Positives = 88/193 (45%), Gaps = 43/193 (22%)
Query: 140 LVLLVKDGEMDDLREVLERSDPAWNPAD--SADAQGQTLLHIAIAQRRPDIVQLLLEFGP 197
L+ ++G D +++++E N AD ++D+ G+T LH A ++V+LL+ G
Sbjct: 8 LIEAAENGNKDRVKDLIE------NGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGA 61
Query: 198 DVESQGRCGCSTPXXXXXXXXXXXXXXXXXXRKASTERSETSTWGPIHLALRGGHLEVLK 257
DV ++ G + P+H A GH EV+K
Sbjct: 62 DVNAKDSDGRT----------------------------------PLHHAAENGHKEVVK 87
Query: 258 LLLIKGANVNALTKDGNTALHLAVEXXXXXXXXXXXXNGARPDIRNARDGDTPLHITASL 317
LL+ KGA+VNA DG T LH A E GA + ++ DG TPL +
Sbjct: 88 LLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDS-DGRTPLDLAREH 146
Query: 318 GYEQMVKLLLQKG 330
G E++VKLL ++G
Sbjct: 147 GNEEVVKLLEKQG 159
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 96.3 bits (238), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 53/125 (42%), Positives = 75/125 (60%)
Query: 360 KLGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGID 419
+LG L AA G ++ LIE GA +N D G T LH A+ +G E+V++LI KG D
Sbjct: 3 ELGKRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGAD 62
Query: 420 VDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYAGISRIL 479
V+AKD DG T LH A + GH ++ +LL+ KGADV A+ S +P+ A + I ++L
Sbjct: 63 VNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLL 122
Query: 480 MHGGA 484
+ GA
Sbjct: 123 ISKGA 127
Score = 90.1 bits (222), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 58/160 (36%), Positives = 87/160 (54%), Gaps = 22/160 (13%)
Query: 295 NGARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSR 354
NGA + ++ DG TPLH A G++++VKLL+ KGA+ ++ G+T AA+ GH
Sbjct: 26 NGADVNASDS-DGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKE 84
Query: 355 LFDALKLGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLI 414
+ ++ LI GA +N KD G T LH A+ +G E+V++LI
Sbjct: 85 I---------------------VKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLI 123
Query: 415 DKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVE 454
KG DV+ D DG T L A E G+ ++ +LL K+G +E
Sbjct: 124 SKGADVNTSDSDGRTPLDLAREHGNEEIVKLLEKQGGWLE 163
Score = 90.1 bits (222), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 55/154 (35%), Positives = 80/154 (51%), Gaps = 21/154 (13%)
Query: 314 TASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSLCVAARKGE 373
A G + VK L++ GA+ + G+T AA+ GH +
Sbjct: 11 AAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEI------------------ 52
Query: 374 VRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHC 433
++ LI GA +N KD G T LH A+ +G E+V++LI KG DV+AKD DG T LH
Sbjct: 53 ---VKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHY 109
Query: 434 AVESGHTDVTELLVKKGADVEARTSKNVSPMQIA 467
A + GH ++ +LL+ KGADV S +P+ +A
Sbjct: 110 AAKEGHKEIVKLLISKGADVNTSDSDGRTPLDLA 143
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 72/130 (55%), Gaps = 1/130 (0%)
Query: 231 ASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEXXXXXXXX 290
A S++ P+H A + GH E++KLL+ KGA+VNA DG T LH A +
Sbjct: 28 ADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVK 87
Query: 291 XXXXNGARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAEC 350
GA + +++ DG TPLH A G++++VKLL+ KGA+ + G+T D+A E
Sbjct: 88 LLISKGADVNAKDS-DGRTPLHYAAKEGHKEIVKLLISKGADVNTSDSDGRTPLDLAREH 146
Query: 351 GHSRLFDALK 360
G+ + L+
Sbjct: 147 GNEEIVKLLE 156
Score = 72.0 bits (175), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 90/193 (46%), Gaps = 43/193 (22%)
Query: 140 LVLLVKDGEMDDLREVLERSDPAWNPAD--SADAQGQTLLHIAIAQRRPDIVQLLLEFGP 197
L+ ++G D +++++E N AD ++D+ G+T LH A + +IV+LL+ G
Sbjct: 8 LIEAAENGNKDRVKDLIE------NGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGA 61
Query: 198 DVESQGRCGCSTPXXXXXXXXXXXXXXXXXXRKASTERSETSTWGPIHLALRGGHLEVLK 257
DV ++ G + P+H A + GH E++K
Sbjct: 62 DVNAKDSDGRT----------------------------------PLHYAAKEGHKEIVK 87
Query: 258 LLLIKGANVNALTKDGNTALHLAVEXXXXXXXXXXXXNGARPDIRNARDGDTPLHITASL 317
LL+ KGA+VNA DG T LH A + GA + ++ DG TPL +
Sbjct: 88 LLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNTSDS-DGRTPLDLAREH 146
Query: 318 GYEQMVKLLLQKG 330
G E++VKLL ++G
Sbjct: 147 GNEEIVKLLEKQG 159
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 95.9 bits (237), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 56/146 (38%), Positives = 81/146 (55%), Gaps = 4/146 (2%)
Query: 361 LGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDV 420
LG L AAR G+ ++ L+ GA +N +D GWT LH A+ G +E+V +L+ G DV
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADV 73
Query: 421 DAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYAGISRILM 480
+AKD G T LH A GH ++ E+L+K GADV A S +P+ +A + I +L+
Sbjct: 74 NAKDSLGVTPLHLAARRGHLEIVEVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVLL 133
Query: 481 HGGA---TKDGIQQTNLRQVSIQFGN 503
GA +D +T +SI GN
Sbjct: 134 KNGADVNAQDKFGKTAF-DISIDNGN 158
Score = 88.2 bits (217), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 86/148 (58%), Gaps = 23/148 (15%)
Query: 303 NARD--GDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALK 360
NARD G TPLH+ A G+ ++V++LL+ GA+ ++ G T
Sbjct: 41 NARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKDSLGVT------------------ 82
Query: 361 LGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDV 420
L +AAR+G + ++ L++ GA +N D HG+T LH A+ +G +E+V +L+ G DV
Sbjct: 83 ---PLHLAARRGHLEIVEVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVLLKNGADV 139
Query: 421 DAKDEDGYTALHCAVESGHTDVTELLVK 448
+A+D+ G TA ++++G+ D+ E+L K
Sbjct: 140 NAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 75/130 (57%), Gaps = 1/130 (0%)
Query: 231 ASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEXXXXXXXX 290
A + + W P+HLA GHLE++++LL GA+VNA G T LHLA
Sbjct: 38 ADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKDSLGVTPLHLAARRGHLEIVE 97
Query: 291 XXXXNGARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAEC 350
NGA + ++ G TPLH+ A G+ ++V++LL+ GA+ ++K GKTA+D++ +
Sbjct: 98 VLLKNGADVNASDSH-GFTPLHLAAKRGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDN 156
Query: 351 GHSRLFDALK 360
G+ L + L+
Sbjct: 157 GNEDLAEILQ 166
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 62/121 (51%), Gaps = 3/121 (2%)
Query: 164 NPAD--SADAQGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPXXXXXXXXXXX 221
N AD + D G T LH+A +IV++LL+ G DV ++ G TP
Sbjct: 36 NGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKDSLGV-TPLHLAARRGHLE 94
Query: 222 XXXXXXXRKASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAV 281
A S++ + P+HLA + GHLE++++LL GA+VNA K G TA +++
Sbjct: 95 IVEVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVLLKNGADVNAQDKFGKTAFDISI 154
Query: 282 E 282
+
Sbjct: 155 D 155
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/169 (31%), Positives = 82/169 (48%), Gaps = 26/169 (15%)
Query: 247 ALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEXXXXXXXXXXXXNGARPDIRNARD 306
A R G + +++L+ GA+VNA G T LHLA NGA D+ NA+D
Sbjct: 21 AARAGQDDEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGA--DV-NAKD 77
Query: 307 --GDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDS 364
G TPLH+ A G+ ++V++LL+ GA DV A H F L L
Sbjct: 78 SLGVTPLHLAARRGHLEIVEVLLKNGA-------------DVNASDSHG--FTPLHL--- 119
Query: 365 LCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRML 413
AA++G + ++ L++ GA +N +D G TA + G ++ +L
Sbjct: 120 ---AAKRGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 32.7 bits (73), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 3/56 (5%)
Query: 151 DLREVLERSDPAWNPADSADAQGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCG 206
++ EVL ++ N +DS G T LH+A + +IV++LL+ G DV +Q + G
Sbjct: 94 EIVEVLLKNGADVNASDS---HGFTPLHLAAKRGHLEIVEVLLKNGADVNAQDKFG 146
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 94.0 bits (232), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 55/146 (37%), Positives = 81/146 (55%), Gaps = 4/146 (2%)
Query: 361 LGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDV 420
LG L AAR G+ ++ L+ GA +N D GWT LH A++ G +E+V +L+ G DV
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADV 73
Query: 421 DAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYAGISRILM 480
+A D G T LH A + GH +V E+L+K GADV A +P+ +A + + I +L+
Sbjct: 74 NADDSLGVTPLHLAADRGHLEVVEVLLKNGADVNANDHNGFTPLHLAANIGHLEIVEVLL 133
Query: 481 HGGA---TKDGIQQTNLRQVSIQFGN 503
GA +D +T +SI GN
Sbjct: 134 KHGADVNAQDKFGKTAF-DISIDNGN 158
Score = 85.9 bits (211), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 49/130 (37%), Positives = 78/130 (60%), Gaps = 1/130 (0%)
Query: 231 ASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEXXXXXXXX 290
A S+ W P+HLA GHLE++++LL GA+VNA G T LHLA +
Sbjct: 38 ADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNADDSLGVTPLHLAADRGHLEVVE 97
Query: 291 XXXXNGARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAEC 350
NGA + N +G TPLH+ A++G+ ++V++LL+ GA+ ++K GKTA+D++ +
Sbjct: 98 VLLKNGADVN-ANDHNGFTPLHLAANIGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDN 156
Query: 351 GHSRLFDALK 360
G+ L + L+
Sbjct: 157 GNEDLAEILQ 166
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 48/148 (32%), Positives = 82/148 (55%), Gaps = 23/148 (15%)
Query: 303 NARD--GDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALK 360
NA D G TPLH+ A G+ ++V++LL+ GA+ + G T +AA+ GH
Sbjct: 41 NASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNADDSLGVTPLHLAADRGH-------- 92
Query: 361 LGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDV 420
+ ++ L++ GA +N D +G+T LH A+ G +E+V +L+ G DV
Sbjct: 93 -------------LEVVEVLLKNGADVNANDHNGFTPLHLAANIGHLEIVEVLLKHGADV 139
Query: 421 DAKDEDGYTALHCAVESGHTDVTELLVK 448
+A+D+ G TA ++++G+ D+ E+L K
Sbjct: 140 NAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 61/121 (50%), Gaps = 3/121 (2%)
Query: 164 NPAD--SADAQGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPXXXXXXXXXXX 221
N AD ++D G T LH+A +IV++LL+ G DV + G TP
Sbjct: 36 NGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNADDSLGV-TPLHLAADRGHLE 94
Query: 222 XXXXXXXRKASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAV 281
A ++ + + P+HLA GHLE++++LL GA+VNA K G TA +++
Sbjct: 95 VVEVLLKNGADVNANDHNGFTPLHLAANIGHLEIVEVLLKHGADVNAQDKFGKTAFDISI 154
Query: 282 E 282
+
Sbjct: 155 D 155
Score = 55.5 bits (132), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 79/169 (46%), Gaps = 26/169 (15%)
Query: 247 ALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEXXXXXXXXXXXXNGARPDIRNARD 306
A R G + +++L+ GA+VNA G T LHLA NGA D+ NA D
Sbjct: 21 AARAGQDDEVRILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGA--DV-NADD 77
Query: 307 --GDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDS 364
G TPLH+ A G+ ++V++LL+ GA+ + +G T +AA GH
Sbjct: 78 SLGVTPLHLAADRGHLEVVEVLLKNGADVNANDHNGFTPLHLAANIGH------------ 125
Query: 365 LCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRML 413
+ ++ L++ GA +N +D G TA + G ++ +L
Sbjct: 126 ---------LEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 94.0 bits (232), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 57/146 (39%), Positives = 81/146 (55%), Gaps = 4/146 (2%)
Query: 361 LGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDV 420
LG L AAR G+ ++ L+ GA +N D G T LH A++ G +E+V +L+ G DV
Sbjct: 14 LGRKLLEAARAGQDDEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADV 73
Query: 421 DAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYAGISRILM 480
DA D GYT LH A GH ++ E+L+K GADV A S ++P+ +A Y I +L+
Sbjct: 74 DASDVFGYTPLHLAAYWGHLEIVEVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLL 133
Query: 481 HGGA---TKDGIQQTNLRQVSIQFGN 503
GA +D +T +SI GN
Sbjct: 134 KHGADVNAQDKFGKTAF-DISIDNGN 158
Score = 79.7 bits (195), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 76/130 (58%), Gaps = 1/130 (0%)
Query: 231 ASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEXXXXXXXX 290
A ++ + P+HLA GHLE++++LL GA+V+A G T LHLA
Sbjct: 38 ADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASDVFGYTPLHLAAYWGHLEIVE 97
Query: 291 XXXXNGARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAEC 350
NGA + ++ DG TPLH+ A GY ++V++LL+ GA+ ++K GKTA+D++ +
Sbjct: 98 VLLKNGADVNAMDS-DGMTPLHLAAKWGYLEIVEVLLKHGADVNAQDKFGKTAFDISIDN 156
Query: 351 GHSRLFDALK 360
G+ L + L+
Sbjct: 157 GNEDLAEILQ 166
Score = 72.0 bits (175), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 48/148 (32%), Positives = 79/148 (53%), Gaps = 23/148 (15%)
Query: 303 NARD--GDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALK 360
NA D G TPLH+ A G+ ++V++LL+ GA+ + G T +AA GH
Sbjct: 41 NAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASDVFGYTPLHLAAYWGH-------- 92
Query: 361 LGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDV 420
+ ++ L++ GA +N D G T LH A+ G +E+V +L+ G DV
Sbjct: 93 -------------LEIVEVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGADV 139
Query: 421 DAKDEDGYTALHCAVESGHTDVTELLVK 448
+A+D+ G TA ++++G+ D+ E+L K
Sbjct: 140 NAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 32.0 bits (71), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 164 NPAD--SADAQGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCG 206
N AD + D+ G T LH+A +IV++LL+ G DV +Q + G
Sbjct: 102 NGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGADVNAQDKFG 146
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 93.6 bits (231), Expect = 3e-19, Method: Composition-based stats.
Identities = 51/144 (35%), Positives = 77/144 (53%)
Query: 361 LGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDV 420
LG L AAR G ++ L+ GA +N D+ GWT LH A++ G +E+V +L+ G DV
Sbjct: 14 LGKKLLEAARAGRDDEVRILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADV 73
Query: 421 DAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYAGISRILM 480
+A D G T LH A GH ++ E+L+K GADV A+ ++P+ +A + I +L+
Sbjct: 74 NAYDTLGSTPLHLAAHFGHLEIVEVLLKNGADVNAKDDNGITPLHLAANRGHLEIVEVLL 133
Query: 481 HGGATKDGIQQTNLRQVSIQFGNG 504
GA + + I NG
Sbjct: 134 KYGADVNAQDKFGKTAFDISINNG 157
Score = 84.3 bits (207), Expect = 1e-16, Method: Composition-based stats.
Identities = 51/132 (38%), Positives = 79/132 (59%), Gaps = 5/132 (3%)
Query: 231 ASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEXXXXXXXX 290
A ++ W P+HLA GHLE++++LL GA+VNA G+T LHLA
Sbjct: 38 ADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAYDTLGSTPLHLAAHFGHLEIVE 97
Query: 291 XXXXNGARPDIRNARD--GDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAA 348
NGA D+ NA+D G TPLH+ A+ G+ ++V++LL+ GA+ ++K GKTA+D++
Sbjct: 98 VLLKNGA--DV-NAKDDNGITPLHLAANRGHLEIVEVLLKYGADVNAQDKFGKTAFDISI 154
Query: 349 ECGHSRLFDALK 360
G+ L + L+
Sbjct: 155 NNGNEDLAEILQ 166
Score = 77.4 bits (189), Expect = 2e-14, Method: Composition-based stats.
Identities = 49/148 (33%), Positives = 81/148 (54%), Gaps = 23/148 (15%)
Query: 303 NARD--GDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALK 360
NA D G TPLH+ A G+ ++V++LL+ GA+ + G T +AA GH
Sbjct: 41 NAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAYDTLGSTPLHLAAHFGH-------- 92
Query: 361 LGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDV 420
+ ++ L++ GA +N KD +G T LH A+ +G +E+V +L+ G DV
Sbjct: 93 -------------LEIVEVLLKNGADVNAKDDNGITPLHLAANRGHLEIVEVLLKYGADV 139
Query: 421 DAKDEDGYTALHCAVESGHTDVTELLVK 448
+A+D+ G TA ++ +G+ D+ E+L K
Sbjct: 140 NAQDKFGKTAFDISINNGNEDLAEILQK 167
Score = 60.1 bits (144), Expect = 3e-09, Method: Composition-based stats.
Identities = 50/169 (29%), Positives = 81/169 (47%), Gaps = 26/169 (15%)
Query: 247 ALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEXXXXXXXXXXXXNGARPDIRNARD 306
A R G + +++L+ GA+VNA G T LHLA NGA D+ NA D
Sbjct: 21 AARAGRDDEVRILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGA--DV-NAYD 77
Query: 307 --GDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDS 364
G TPLH+ A G+ ++V++LL+ GA+ ++ +G T
Sbjct: 78 TLGSTPLHLAAHFGHLEIVEVLLKNGADVNAKDDNGIT---------------------P 116
Query: 365 LCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRML 413
L +AA +G + ++ L++ GA +N +D G TA + G ++ +L
Sbjct: 117 LHLAANRGHLEIVEVLLKYGADVNAQDKFGKTAFDISINNGNEDLAEIL 165
Score = 32.3 bits (72), Expect = 0.76, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 26/40 (65%)
Query: 167 DSADAQGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCG 206
++ D G T LH+A + +IV++LL++G DV +Q + G
Sbjct: 107 NAKDDNGITPLHLAANRGHLEIVEVLLKYGADVNAQDKFG 146
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 92.4 bits (228), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 58/160 (36%), Positives = 85/160 (53%), Gaps = 22/160 (13%)
Query: 295 NGARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSR 354
NGA P+ ++ DG TPLH A G++++VKLLL KGA+ ++ G+T AAE GH
Sbjct: 26 NGADPNASDS-DGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKE 84
Query: 355 LFDALKLGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLI 414
+ ++ L+ GA N KD G T LH A+ G E+V++L+
Sbjct: 85 I---------------------VKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLL 123
Query: 415 DKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVE 454
KG D + D DG T L A E G+ ++ +LL K+G +E
Sbjct: 124 SKGADPNTSDSDGRTPLDLAREHGNEEIVKLLEKQGGWLE 163
Score = 90.5 bits (223), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 56/150 (37%), Positives = 84/150 (56%), Gaps = 4/150 (2%)
Query: 360 KLGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGID 419
+LG L AA G ++ L+E GA N D G T LH A+ G E+V++L+ KG D
Sbjct: 3 ELGKRLIEAAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGAD 62
Query: 420 VDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYAGISRIL 479
+AKD DG T LH A E+GH ++ +LL+ KGAD A+ S +P+ A + I ++L
Sbjct: 63 PNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLL 122
Query: 480 MHGGA---TKDGIQQTNLRQVSIQFGNGKV 506
+ GA T D +T L ++ + GN ++
Sbjct: 123 LSKGADPNTSDSDGRTPL-DLAREHGNEEI 151
Score = 85.9 bits (211), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 50/130 (38%), Positives = 71/130 (54%), Gaps = 1/130 (0%)
Query: 231 ASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEXXXXXXXX 290
A S++ P+H A GH E++KLLL KGA+ NA DG T LH A E
Sbjct: 28 ADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVK 87
Query: 291 XXXXNGARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAEC 350
GA P+ +++ DG TPLH A G++++VKLLL KGA+ + G+T D+A E
Sbjct: 88 LLLSKGADPNAKDS-DGRTPLHYAAENGHKEIVKLLLSKGADPNTSDSDGRTPLDLAREH 146
Query: 351 GHSRLFDALK 360
G+ + L+
Sbjct: 147 GNEEIVKLLE 156
Score = 76.3 bits (186), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 80/171 (46%), Gaps = 22/171 (12%)
Query: 247 ALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEXXXXXXXXXXXXNGARPDIRNARD 306
A G+ + +K LL GA+ NA DG T LH A E GA P+ +++ D
Sbjct: 11 AAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDS-D 69
Query: 307 GDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSLC 366
G TPLH A G++++VKLLL KGA+ ++ G+T AAE GH +
Sbjct: 70 GRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEI----------- 118
Query: 367 VAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKG 417
++ L+ GA N D G T L A G E+V++L +G
Sbjct: 119 ----------VKLLLSKGADPNTSDSDGRTPLDLAREHGNEEIVKLLEKQG 159
Score = 75.5 bits (184), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 58/193 (30%), Positives = 88/193 (45%), Gaps = 41/193 (21%)
Query: 140 LVLLVKDGEMDDLREVLER-SDPAWNPADSADAQGQTLLHIAIAQRRPDIVQLLLEFGPD 198
L+ ++G D ++++LE +DP +++D+ G+T LH A +IV+LLL G D
Sbjct: 8 LIEAAENGNKDRVKDLLENGADP-----NASDSDGRTPLHYAAENGHKEIVKLLLSKGAD 62
Query: 199 VESQGRCGCSTPXXXXXXXXXXXXXXXXXXRKASTERSETSTWGPIHLALRGGHLEVLKL 258
++ G + P+H A GH E++KL
Sbjct: 63 PNAKDSDGRT----------------------------------PLHYAAENGHKEIVKL 88
Query: 259 LLIKGANVNALTKDGNTALHLAVEXXXXXXXXXXXXNGARPDIRNARDGDTPLHITASLG 318
LL KGA+ NA DG T LH A E GA P+ ++ DG TPL + G
Sbjct: 89 LLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNTSDS-DGRTPLDLAREHG 147
Query: 319 YEQMVKLLLQKGA 331
E++VKLL ++G
Sbjct: 148 NEEIVKLLEKQGG 160
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 91.7 bits (226), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 54/146 (36%), Positives = 79/146 (54%), Gaps = 4/146 (2%)
Query: 361 LGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDV 420
LG L AAR G ++ L+ GA +N +D GWT LH A+F G +E+V +L+ G DV
Sbjct: 14 LGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADV 73
Query: 421 DAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYAGISRILM 480
+A D G T L A GH ++ E+L+K GADV A + +P+ +A + I +L+
Sbjct: 74 NAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLL 133
Query: 481 HGGA---TKDGIQQTNLRQVSIQFGN 503
GA +D +T +SI GN
Sbjct: 134 KNGADVNAQDKFGKTAF-DISIDNGN 158
Score = 84.3 bits (207), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 48/130 (36%), Positives = 75/130 (57%), Gaps = 1/130 (0%)
Query: 231 ASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEXXXXXXXX 290
A + S W P+HLA GHLE++++LL GA+VNA+ G T L LA
Sbjct: 38 ADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVE 97
Query: 291 XXXXNGARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAEC 350
NGA + N +G TPLH+ A G+ ++V++LL+ GA+ ++K GKTA+D++ +
Sbjct: 98 VLLKNGADVN-ANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDN 156
Query: 351 GHSRLFDALK 360
G+ L + L+
Sbjct: 157 GNEDLAEILQ 166
Score = 77.8 bits (190), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 84/154 (54%), Gaps = 22/154 (14%)
Query: 295 NGARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSR 354
NGA + +A G TPLH+ A G+ ++V++LL+ GA+ + +G T +AA GH
Sbjct: 36 NGADVNAEDAS-GWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGH-- 92
Query: 355 LFDALKLGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLI 414
+ ++ L++ GA +N D+ G T LH A+ G +E+V +L+
Sbjct: 93 -------------------LEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLL 133
Query: 415 DKGIDVDAKDEDGYTALHCAVESGHTDVTELLVK 448
G DV+A+D+ G TA ++++G+ D+ E+L K
Sbjct: 134 KNGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 57/116 (49%), Gaps = 1/116 (0%)
Query: 167 DSADAQGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPXXXXXXXXXXXXXXXX 226
++ DA G T LH+A +IV++LL+ G DV + G TP
Sbjct: 41 NAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGM-TPLRLAALFGHLEIVEVL 99
Query: 227 XXRKASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVE 282
A ++ P+HLA GHLE++++LL GA+VNA K G TA ++++
Sbjct: 100 LKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISID 155
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 90.9 bits (224), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 56/150 (37%), Positives = 86/150 (57%), Gaps = 4/150 (2%)
Query: 360 KLGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGID 419
+LG L AA G ++ L+E GA +N D G T LH A+ G EVV++L+ +G D
Sbjct: 3 ELGKRLIEAAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGAD 62
Query: 420 VDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYAGISRIL 479
+AKD DG T LH A E+GH +V +LL+ +GAD A+ S +P+ +A + + ++L
Sbjct: 63 PNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLL 122
Query: 480 MHGGA---TKDGIQQTNLRQVSIQFGNGKV 506
+ GA T D +T L ++ + GN +V
Sbjct: 123 LSQGADPNTSDSDGRTPL-DLAREHGNEEV 151
Score = 89.4 bits (220), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 51/130 (39%), Positives = 74/130 (56%), Gaps = 1/130 (0%)
Query: 231 ASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEXXXXXXXX 290
A S++ P+HLA GH EV+KLLL +GA+ NA DG T LHLA E
Sbjct: 28 ADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVK 87
Query: 291 XXXXNGARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAEC 350
GA P+ +++ DG TPLH+ A G++++VKLLL +GA+ + G+T D+A E
Sbjct: 88 LLLSQGADPNAKDS-DGKTPLHLAAENGHKEVVKLLLSQGADPNTSDSDGRTPLDLAREH 146
Query: 351 GHSRLFDALK 360
G+ + L+
Sbjct: 147 GNEEVVKLLE 156
Score = 89.0 bits (219), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 58/160 (36%), Positives = 86/160 (53%), Gaps = 22/160 (13%)
Query: 295 NGARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSR 354
NGA + ++ DG TPLH+ A G++++VKLLL +GA+ ++ GKT +AAE GH
Sbjct: 26 NGADVNASDS-DGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKE 84
Query: 355 LFDALKLGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLI 414
+ ++ L+ GA N KD G T LH A+ G EVV++L+
Sbjct: 85 V---------------------VKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLL 123
Query: 415 DKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVE 454
+G D + D DG T L A E G+ +V +LL K+G +E
Sbjct: 124 SQGADPNTSDSDGRTPLDLAREHGNEEVVKLLEKQGGWLE 163
Score = 82.8 bits (203), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 59/171 (34%), Positives = 84/171 (49%), Gaps = 22/171 (12%)
Query: 247 ALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEXXXXXXXXXXXXNGARPDIRNARD 306
A G+ + +K LL GA+VNA DG T LHLA E GA P+ +++ D
Sbjct: 11 AAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDS-D 69
Query: 307 GDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSLC 366
G TPLH+ A G++++VKLLL +GA+ ++ GKT +AAE GH +
Sbjct: 70 GKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEV----------- 118
Query: 367 VAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKG 417
++ L+ GA N D G T L A G EVV++L +G
Sbjct: 119 ----------VKLLLSQGADPNTSDSDGRTPLDLAREHGNEEVVKLLEKQG 159
Score = 76.6 bits (187), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 60/194 (30%), Positives = 90/194 (46%), Gaps = 43/194 (22%)
Query: 140 LVLLVKDGEMDDLREVLERSDPAWNPAD--SADAQGQTLLHIAIAQRRPDIVQLLLEFGP 197
L+ ++G D ++++LE N AD ++D+ G+T LH+A ++V+LLL G
Sbjct: 8 LIEAAENGNKDRVKDLLE------NGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGA 61
Query: 198 DVESQGRCGCSTPXXXXXXXXXXXXXXXXXXRKASTERSETSTWGPIHLALRGGHLEVLK 257
D ++ G + P+HLA GH EV+K
Sbjct: 62 DPNAKDSDGKT----------------------------------PLHLAAENGHKEVVK 87
Query: 258 LLLIKGANVNALTKDGNTALHLAVEXXXXXXXXXXXXNGARPDIRNARDGDTPLHITASL 317
LLL +GA+ NA DG T LHLA E GA P+ ++ DG TPL +
Sbjct: 88 LLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNTSDS-DGRTPLDLAREH 146
Query: 318 GYEQMVKLLLQKGA 331
G E++VKLL ++G
Sbjct: 147 GNEEVVKLLEKQGG 160
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 90.9 bits (224), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 54/146 (36%), Positives = 85/146 (58%), Gaps = 4/146 (2%)
Query: 361 LGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDV 420
LG L AAR G+ ++ L+ GA +N D G T LH A++ G E+V +L+ G DV
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADV 73
Query: 421 DAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYAGISRILM 480
+A+D DG+T LH A ++GH ++ E+L+K GADV A+ + ++P+ +A + I +L+
Sbjct: 74 NARDTDGWTPLHLAADNGHLEIVEVLLKYGADVNAQDAYGLTPLHLAADRGHLEIVEVLL 133
Query: 481 HGGA---TKDGIQQTNLRQVSIQFGN 503
GA +D +T +SI GN
Sbjct: 134 KHGADVNAQDKFGKTAF-DISIDNGN 158
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 49/148 (33%), Positives = 85/148 (57%), Gaps = 23/148 (15%)
Query: 303 NARD--GDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALK 360
NA D G TPLH+ A +G+ ++V++LL+ GA+ R+ G T +AA+ GH
Sbjct: 41 NAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARDTDGWTPLHLAADNGH-------- 92
Query: 361 LGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDV 420
+ ++ L++ GA +N +D +G T LH A+ +G +E+V +L+ G DV
Sbjct: 93 -------------LEIVEVLLKYGADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHGADV 139
Query: 421 DAKDEDGYTALHCAVESGHTDVTELLVK 448
+A+D+ G TA ++++G+ D+ E+L K
Sbjct: 140 NAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 77/154 (50%), Gaps = 21/154 (13%)
Query: 314 TASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSLCVAARKGE 373
A G + V++L+ GA+ + G T +AA GH +
Sbjct: 21 AARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEI------------------ 62
Query: 374 VRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHC 433
++ L++ GA +N +D GWT LH A+ G +E+V +L+ G DV+A+D G T LH
Sbjct: 63 ---VEVLLKHGADVNARDTDGWTPLHLAADNGHLEIVEVLLKYGADVNAQDAYGLTPLHL 119
Query: 434 AVESGHTDVTELLVKKGADVEARTSKNVSPMQIA 467
A + GH ++ E+L+K GADV A+ + I+
Sbjct: 120 AADRGHLEIVEVLLKHGADVNAQDKFGKTAFDIS 153
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/199 (28%), Positives = 88/199 (44%), Gaps = 70/199 (35%)
Query: 164 NPAD--SADAQGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPXXXXXXXXXXX 221
N AD + D QG T LH+A P+IV++LL+ G DV ++
Sbjct: 36 NGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNAR------------------- 76
Query: 222 XXXXXXXRKASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAV 281
+T W P+HLA GHLE++++LL GA+VNA G T
Sbjct: 77 ---------------DTDGWTPLHLAADNGHLEIVEVLLKYGADVNAQDAYGLT------ 115
Query: 282 EXXXXXXXXXXXXNGARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGK 341
PLH+ A G+ ++V++LL+ GA+ ++K GK
Sbjct: 116 ----------------------------PLHLAADRGHLEIVEVLLKHGADVNAQDKFGK 147
Query: 342 TAYDVAAECGHSRLFDALK 360
TA+D++ + G+ L + L+
Sbjct: 148 TAFDISIDNGNEDLAEILQ 166
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 87.0 bits (214), Expect = 2e-17, Method: Composition-based stats.
Identities = 53/146 (36%), Positives = 81/146 (55%), Gaps = 4/146 (2%)
Query: 361 LGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDV 420
LG L AAR G+ ++ L+ GA N D +G T LH A+ G +E+V +L+ G DV
Sbjct: 2 LGKKLLEAARAGQDDEVRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADV 61
Query: 421 DAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYAGISRILM 480
+A D +G T LH A GH ++ E+L+K GADV A+ + ++P+ +A + I +L+
Sbjct: 62 NAVDTNGTTPLHLAASLGHLEIVEVLLKYGADVNAKDATGITPLYLAAYWGHLEIVEVLL 121
Query: 481 HGGA---TKDGIQQTNLRQVSIQFGN 503
GA +D +T +SI GN
Sbjct: 122 KHGADVNAQDKFGKTAF-DISIDIGN 146
Score = 77.8 bits (190), Expect = 1e-14, Method: Composition-based stats.
Identities = 47/146 (32%), Positives = 82/146 (56%), Gaps = 23/146 (15%)
Query: 303 NARD--GDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALK 360
NA D G TPLH+ A++G+ ++V++LL+ GA+ + +G T +AA GH
Sbjct: 29 NAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVDTNGTTPLHLAASLGH-------- 80
Query: 361 LGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDV 420
+ ++ L++ GA +N KD G T L+ A++ G +E+V +L+ G DV
Sbjct: 81 -------------LEIVEVLLKYGADVNAKDATGITPLYLAAYWGHLEIVEVLLKHGADV 127
Query: 421 DAKDEDGYTALHCAVESGHTDVTELL 446
+A+D+ G TA +++ G+ D+ E+L
Sbjct: 128 NAQDKFGKTAFDISIDIGNEDLAEIL 153
Score = 77.4 bits (189), Expect = 2e-14, Method: Composition-based stats.
Identities = 43/118 (36%), Positives = 73/118 (61%), Gaps = 1/118 (0%)
Query: 243 PIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEXXXXXXXXXXXXNGARPDIR 302
P+H+A GHLE++++LL GA+VNA+ +G T LHLA GA + +
Sbjct: 38 PLHMAAAVGHLEIVEVLLRNGADVNAVDTNGTTPLHLAASLGHLEIVEVLLKYGADVNAK 97
Query: 303 NARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALK 360
+A G TPL++ A G+ ++V++LL+ GA+ ++K GKTA+D++ + G+ L + L+
Sbjct: 98 DA-TGITPLYLAAYWGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDIGNEDLAEILQ 154
Score = 54.3 bits (129), Expect = 2e-07, Method: Composition-based stats.
Identities = 37/117 (31%), Positives = 59/117 (50%), Gaps = 1/117 (0%)
Query: 166 ADSADAQGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPXXXXXXXXXXXXXXX 225
A++ D G+T LH+A A +IV++LL G DV + G +TP
Sbjct: 28 ANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVDTNG-TTPLHLAASLGHLEIVEV 86
Query: 226 XXXRKASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVE 282
A + + P++LA GHLE++++LL GA+VNA K G TA ++++
Sbjct: 87 LLKYGADVNAKDATGITPLYLAAYWGHLEIVEVLLKHGADVNAQDKFGKTAFDISID 143
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 86.3 bits (212), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 53/146 (36%), Positives = 80/146 (54%), Gaps = 4/146 (2%)
Query: 361 LGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDV 420
LG L AAR G+ ++ L+ GA +N D G+T LH A+ G +E+V +L+ G DV
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADV 73
Query: 421 DAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYAGISRILM 480
+A D G T LH A +GH ++ E+L+K GADV A + +P+ +A + I +L+
Sbjct: 74 NASDLTGITPLHLAAATGHLEIVEVLLKHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLL 133
Query: 481 HGGA---TKDGIQQTNLRQVSIQFGN 503
GA +D +T +SI GN
Sbjct: 134 KHGADVNAQDKFGKTAF-DISIDNGN 158
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 48/142 (33%), Positives = 74/142 (52%), Gaps = 21/142 (14%)
Query: 315 ASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSLCVAARKGEV 374
A G + V++L+ GA+ + G T +AA GH +
Sbjct: 22 ARAGQDDEVRILMANGADVNATDNDGYTPLHLAASNGH---------------------L 60
Query: 375 RTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCA 434
++ L++ GA +N DL G T LH A+ G +E+V +L+ G DV+A D DG+T LH A
Sbjct: 61 EIVEVLLKNGADVNASDLTGITPLHLAAATGHLEIVEVLLKHGADVNAYDNDGHTPLHLA 120
Query: 435 VESGHTDVTELLVKKGADVEAR 456
+ GH ++ E+L+K GADV A+
Sbjct: 121 AKYGHLEIVEVLLKHGADVNAQ 142
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 46/130 (35%), Positives = 75/130 (57%), Gaps = 1/130 (0%)
Query: 231 ASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEXXXXXXXX 290
A ++ + P+HLA GHLE++++LL GA+VNA G T LHLA
Sbjct: 38 ADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASDLTGITPLHLAAATGHLEIVE 97
Query: 291 XXXXNGARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAEC 350
+GA + + DG TPLH+ A G+ ++V++LL+ GA+ ++K GKTA+D++ +
Sbjct: 98 VLLKHGADVNAYD-NDGHTPLHLAAKYGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDN 156
Query: 351 GHSRLFDALK 360
G+ L + L+
Sbjct: 157 GNEDLAEILQ 166
Score = 75.9 bits (185), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 49/152 (32%), Positives = 83/152 (54%), Gaps = 22/152 (14%)
Query: 295 NGARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSR 354
NGA + + DG TPLH+ AS G+ ++V++LL+ GA+ + +G T +AA GH
Sbjct: 36 NGADVNATD-NDGYTPLHLAASNGHLEIVEVLLKNGADVNASDLTGITPLHLAAATGH-- 92
Query: 355 LFDALKLGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLI 414
+ ++ L++ GA +N D G T LH A+ G +E+V +L+
Sbjct: 93 -------------------LEIVEVLLKHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLL 133
Query: 415 DKGIDVDAKDEDGYTALHCAVESGHTDVTELL 446
G DV+A+D+ G TA ++++G+ D+ E+L
Sbjct: 134 KHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 57/121 (47%), Gaps = 36/121 (29%)
Query: 164 NPAD--SADAQGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPXXXXXXXXXXX 221
N AD ++D G T LH+A A +IV++LL+ G DV + G +
Sbjct: 69 NGADVNASDLTGITPLHLAAATGHLEIVEVLLKHGADVNAYDNDGHT------------- 115
Query: 222 XXXXXXXRKASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAV 281
P+HLA + GHLE++++LL GA+VNA K G TA +++
Sbjct: 116 ---------------------PLHLAAKYGHLEIVEVLLKHGADVNAQDKFGKTAFDISI 154
Query: 282 E 282
+
Sbjct: 155 D 155
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 85.5 bits (210), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 55/146 (37%), Positives = 79/146 (54%), Gaps = 4/146 (2%)
Query: 361 LGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDV 420
LG L AAR G+ ++ LI GA +N D G T LH A+ G +E+V +L+ G DV
Sbjct: 14 LGKKLLEAARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADV 73
Query: 421 DAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYAGISRILM 480
DA D G+T LH A +GH ++ E+L+K GADV A +P+ +A + I +L+
Sbjct: 74 DAADVYGFTPLHLAAMTGHLEIVEVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEVLL 133
Query: 481 HGGA---TKDGIQQTNLRQVSIQFGN 503
GA +D +T +SI GN
Sbjct: 134 KYGADVNAQDKFGKTAF-DISIDNGN 158
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/127 (37%), Positives = 72/127 (56%), Gaps = 5/127 (3%)
Query: 231 ASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEXXXXXXXX 290
A + + P+HLA GHLE++++LL GA+V+A G T LHLA
Sbjct: 38 ADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAADVYGFTPLHLAAMTGHLEIVE 97
Query: 291 XXXXNGARPDIRNARD--GDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAA 348
GA D+ NA D G TPLH+ A G+ ++V++LL+ GA+ ++K GKTA+D++
Sbjct: 98 VLLKYGA--DV-NAFDMTGSTPLHLAADEGHLEIVEVLLKYGADVNAQDKFGKTAFDISI 154
Query: 349 ECGHSRL 355
+ G+ L
Sbjct: 155 DNGNEDL 161
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 78/144 (54%), Gaps = 23/144 (15%)
Query: 303 NARD--GDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALK 360
NA D G TPLH+ A G+ ++V++LL+ GA+ + G T +AA GH
Sbjct: 41 NAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAADVYGFTPLHLAAMTGH-------- 92
Query: 361 LGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDV 420
+ ++ L++ GA +N D+ G T LH A+ +G +E+V +L+ G DV
Sbjct: 93 -------------LEIVEVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEVLLKYGADV 139
Query: 421 DAKDEDGYTALHCAVESGHTDVTE 444
+A+D+ G TA ++++G+ D+ +
Sbjct: 140 NAQDKFGKTAFDISIDNGNEDLAK 163
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 72/152 (47%), Gaps = 22/152 (14%)
Query: 247 ALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEXXXXXXXXXXXXNGARPDIRNARD 306
A R G + +++L+ GA+VNA+ G T LHLA +GA D +
Sbjct: 21 AARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAADVY- 79
Query: 307 GDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSLC 366
G TPLH+ A G+ ++V++LL+ GA+ + +G T +AA+ GH
Sbjct: 80 GFTPLHLAAMTGHLEIVEVLLKYGADVNAFDMTGSTPLHLAADEGH-------------- 125
Query: 367 VAARKGEVRTMQRLIEAGAAINGKDLHGWTAL 398
+ ++ L++ GA +N +D G TA
Sbjct: 126 -------LEIVEVLLKYGADVNAQDKFGKTAF 150
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 54/116 (46%), Gaps = 34/116 (29%)
Query: 167 DSADAQGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPXXXXXXXXXXXXXXXX 226
D+AD G T LH+A +IV++LL++G DV + G +
Sbjct: 74 DAADVYGFTPLHLAAMTGHLEIVEVLLKYGADVNAFDMTGST------------------ 115
Query: 227 XXRKASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVE 282
P+HLA GHLE++++LL GA+VNA K G TA ++++
Sbjct: 116 ----------------PLHLAADEGHLEIVEVLLKYGADVNAQDKFGKTAFDISID 155
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 85.5 bits (210), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 54/146 (36%), Positives = 81/146 (55%), Gaps = 4/146 (2%)
Query: 361 LGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDV 420
LG L AAR G+ ++ L+ GA +N +D G T LH A+ KG +E+V +L+ G DV
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADV 73
Query: 421 DAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYAGISRILM 480
+A D+ G T LH A GH ++ E+L+K GADV A + +P+ +A + I +L+
Sbjct: 74 NAADKMGDTPLHLAALYGHLEIVEVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEVLL 133
Query: 481 HGGA---TKDGIQQTNLRQVSIQFGN 503
GA +D +T +SI GN
Sbjct: 134 KYGADVNAQDKFGKTAF-DISIDNGN 158
Score = 79.7 bits (195), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 49/147 (33%), Positives = 84/147 (57%), Gaps = 12/147 (8%)
Query: 314 TASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDAL-----------KLG 362
A G + V++L+ GA+ + SGKT +AA GH + + L K+G
Sbjct: 21 AARAGQDDEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAADKMG 80
Query: 363 DS-LCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVD 421
D+ L +AA G + ++ L++ GA +N D +G+T LH A+ G +E+V +L+ G DV+
Sbjct: 81 DTPLHLAALYGHLEIVEVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEVLLKYGADVN 140
Query: 422 AKDEDGYTALHCAVESGHTDVTELLVK 448
A+D+ G TA ++++G+ D+ E+L K
Sbjct: 141 AQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 79.3 bits (194), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 52/132 (39%), Positives = 78/132 (59%), Gaps = 5/132 (3%)
Query: 231 ASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEXXXXXXXX 290
A + S P+HLA GHLE++++LL GA+VNA K G+T LHLA
Sbjct: 38 ADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAADKMGDTPLHLAALYGHLEIVE 97
Query: 291 XXXXNGARPDIRNARD--GDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAA 348
NGA D+ NA D G TPLH+ A G+ ++V++LL+ GA+ ++K GKTA+D++
Sbjct: 98 VLLKNGA--DV-NATDTYGFTPLHLAADAGHLEIVEVLLKYGADVNAQDKFGKTAFDISI 154
Query: 349 ECGHSRLFDALK 360
+ G+ L + L+
Sbjct: 155 DNGNEDLAEILQ 166
Score = 62.4 bits (150), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 63/121 (52%), Gaps = 3/121 (2%)
Query: 164 NPAD--SADAQGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPXXXXXXXXXXX 221
N AD + D G+T LH+A + +IV++LL+ G DV + + G TP
Sbjct: 36 NGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAADKMG-DTPLHLAALYGHLE 94
Query: 222 XXXXXXXRKASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAV 281
A ++T + P+HLA GHLE++++LL GA+VNA K G TA +++
Sbjct: 95 IVEVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEVLLKYGADVNAQDKFGKTAFDISI 154
Query: 282 E 282
+
Sbjct: 155 D 155
Score = 58.9 bits (141), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 80/169 (47%), Gaps = 26/169 (15%)
Query: 247 ALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEXXXXXXXXXXXXNGARPDIRNARD 306
A R G + +++L+ GA+VNA G T LHLA +GA D+ NA D
Sbjct: 21 AARAGQDDEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGA--DV-NAAD 77
Query: 307 --GDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDS 364
GDTPLH+ A G+ ++V++LL+ GA+ + G T +AA+ GH
Sbjct: 78 KMGDTPLHLAALYGHLEIVEVLLKNGADVNATDTYGFTPLHLAADAGH------------ 125
Query: 365 LCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRML 413
+ ++ L++ GA +N +D G TA + G ++ +L
Sbjct: 126 ---------LEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 85.1 bits (209), Expect = 9e-17, Method: Composition-based stats.
Identities = 50/144 (34%), Positives = 77/144 (53%)
Query: 361 LGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDV 420
LG L AAR G+ ++ L+ GA +N D G T LH A+ G +E+V +L+ G DV
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADV 73
Query: 421 DAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYAGISRILM 480
+A D G T LH A ++GH ++ E+L+K GADV A+ + +P+ +A + I +L+
Sbjct: 74 NAWDNYGATPLHLAADNGHLEIVEVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIVEVLL 133
Query: 481 HGGATKDGIQQTNLRQVSIQFGNG 504
GA + + I NG
Sbjct: 134 KYGADVNAQDKFGKTAFDISIDNG 157
Score = 83.6 bits (205), Expect = 3e-16, Method: Composition-based stats.
Identities = 49/148 (33%), Positives = 83/148 (56%), Gaps = 23/148 (15%)
Query: 303 NARD--GDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALK 360
NA D G TPLH+ A G+ ++V++LL+ GA+ + G T +AA+ GH
Sbjct: 41 NATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAWDNYGATPLHLAADNGH-------- 92
Query: 361 LGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDV 420
+ ++ L++ GA +N KD G+T LH A++ G +E+V +L+ G DV
Sbjct: 93 -------------LEIVEVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGADV 139
Query: 421 DAKDEDGYTALHCAVESGHTDVTELLVK 448
+A+D+ G TA ++++G+ D+ E+L K
Sbjct: 140 NAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 79.0 bits (193), Expect = 7e-15, Method: Composition-based stats.
Identities = 48/120 (40%), Positives = 76/120 (63%), Gaps = 5/120 (4%)
Query: 243 PIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEXXXXXXXXXXXXNGARPDIR 302
P+HLA + GHLE++++LL GA+VNA G T LHLA + +GA D+
Sbjct: 50 PLHLAAKTGHLEIVEVLLKYGADVNAWDNYGATPLHLAADNGHLEIVEVLLKHGA--DV- 106
Query: 303 NARD--GDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALK 360
NA+D G TPLH+ A G+ ++V++LL+ GA+ ++K GKTA+D++ + G+ L + L+
Sbjct: 107 NAKDYEGFTPLHLAAYDGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 166
Score = 55.8 bits (133), Expect = 5e-08, Method: Composition-based stats.
Identities = 49/169 (28%), Positives = 80/169 (47%), Gaps = 26/169 (15%)
Query: 247 ALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEXXXXXXXXXXXXNGARPDIRNARD 306
A R G + +++L+ GA+VNA G+T LHLA + GA D+ NA D
Sbjct: 21 AARAGQDDEVRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGA--DV-NAWD 77
Query: 307 --GDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDS 364
G TPLH+ A G+ ++V++LL+ GA+ ++ G T +AA GH
Sbjct: 78 NYGATPLHLAADNGHLEIVEVLLKHGADVNAKDYEGFTPLHLAAYDGH------------ 125
Query: 365 LCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRML 413
+ ++ L++ GA +N +D G TA + G ++ +L
Sbjct: 126 ---------LEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 32.0 bits (71), Expect = 0.78, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 26/40 (65%)
Query: 167 DSADAQGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCG 206
++ D +G T LH+A +IV++LL++G DV +Q + G
Sbjct: 107 NAKDYEGFTPLHLAAYDGHLEIVEVLLKYGADVNAQDKFG 146
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 41/87 (47%), Positives = 62/87 (71%)
Query: 365 LCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKD 424
L +AAR G + ++ L+EAGA +N KD +G T LH A+ G +EVV++L++ G DV+AKD
Sbjct: 6 LHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKD 65
Query: 425 EDGYTALHCAVESGHTDVTELLVKKGA 451
++G T LH A +GH +V +LL++ GA
Sbjct: 66 KNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 36/91 (39%), Positives = 59/91 (64%)
Query: 394 GWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADV 453
G T LH A+ G +EVV++L++ G DV+AKD++G T LH A +GH +V +LL++ GADV
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61
Query: 454 EARTSKNVSPMQIAECLHYAGISRILMHGGA 484
A+ +P+ +A + + ++L+ GA
Sbjct: 62 NAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 42/89 (47%), Positives = 56/89 (62%), Gaps = 1/89 (1%)
Query: 243 PIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEXXXXXXXXXXXXNGARPDIR 302
P+HLA R GHLEV+KLLL GA+VNA K+G T LHLA GA + +
Sbjct: 5 PLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAK 64
Query: 303 NARDGDTPLHITASLGYEQMVKLLLQKGA 331
+ ++G TPLH+ A G+ ++VKLLL+ GA
Sbjct: 65 D-KNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 58/129 (44%), Gaps = 38/129 (29%)
Query: 136 GSPVLVLLVKDGEMDDLREVLERSDPAWNPADSADAQGQTLLHIAIAQRRPDIVQLLLEF 195
G L L ++G ++ ++ +LE A ++ D G+T LH+A ++V+LLLE
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLE----AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA 57
Query: 196 GPDVESQGRCGCSTPXXXXXXXXXXXXXXXXXXRKASTERSETSTWGPIHLALRGGHLEV 255
G DV ++ + G + P+HLA R GHLEV
Sbjct: 58 GADVNAKDKNGRT----------------------------------PLHLAARNGHLEV 83
Query: 256 LKLLLIKGA 264
+KLLL GA
Sbjct: 84 VKLLLEAGA 92
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 35/59 (59%)
Query: 426 DGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYAGISRILMHGGA 484
+G T LH A +GH +V +LL++ GADV A+ +P+ +A + + ++L+ GA
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 59
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 83.2 bits (204), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 81/240 (33%), Positives = 113/240 (47%), Gaps = 20/240 (8%)
Query: 242 GPIHLAL--RGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEXXXXXXXXXXXXNGA-- 297
G + LA G EVL+LL +GA++N DG TALH A NGA
Sbjct: 41 GAVFLAACSSGDTEEVLRLLE-RGADINYANVDGLTALHQACIDDNVDMVKFLVENGANI 99
Query: 298 -RPDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLF 356
+PD +G PLH AS GY + + L+ +GA+ N G T D+A E L
Sbjct: 100 NQPD----NEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELL 155
Query: 357 -DALKLGDSLCVAARKGEVRTMQRLIEAGAAINGKDLH-------GWTALHRASFKGKIE 408
+ + AARK E R M R +A +N ++ G TALH A+ KG E
Sbjct: 156 QNEVNRQGVDIEAARKEEERIMLR--DARQWLNSGHINDVRHAKSGGTALHVAAAKGYTE 213
Query: 409 VVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAE 468
V+++LI DV+ KD DG+T LH A G + +LV+ D+EA + +A+
Sbjct: 214 VLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVAD 273
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 55/244 (22%), Positives = 94/244 (38%), Gaps = 64/244 (26%)
Query: 134 FVGSPVLVLLVKDGEMDDLREVLERSDPAWNPADSADAQGQTLLHIAIAQRRPDIVQLLL 193
F V + G+ +++ +LER + A+ G T LH A D+V+ L+
Sbjct: 38 FDDGAVFLAACSSGDTEEVLRLLERG----ADINYANVDGLTALHQACIDDNVDMVKFLV 93
Query: 194 EFGPDVESQGRCGCSTPXXXXXXXXXXXXXXXXXXRKASTERSETSTWGPIHLALRGGHL 253
E G A+ + + W P+H A G+L
Sbjct: 94 ENG----------------------------------ANINQPDNEGWIPLHAAASCGYL 119
Query: 254 EVLKLLLIKGANVNALTKDGNTALHLAV--------------------------EXXXXX 287
++ + L+ +GA+V A+ +G+T L +A E
Sbjct: 120 DIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLR 179
Query: 288 XXXXXXXNGARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVA 347
+G D+R+A+ G T LH+ A+ GY +++KLL+Q + I++ G T A
Sbjct: 180 DARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAA 239
Query: 348 AECG 351
A G
Sbjct: 240 AHWG 243
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 43/84 (51%)
Query: 401 ASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKN 460
A G E V L+++G D++ + DG TALH A + D+ + LV+ GA++ ++
Sbjct: 47 ACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEG 106
Query: 461 VSPMQIAECLHYAGISRILMHGGA 484
P+ A Y I+ L+ GA
Sbjct: 107 WIPLHAAASCGYLDIAEYLISQGA 130
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 83.2 bits (204), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 53/146 (36%), Positives = 81/146 (55%), Gaps = 4/146 (2%)
Query: 361 LGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDV 420
LG L AAR G+ ++ L+ GA +N +D +G T LH A+ G +E+V +L+ G DV
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADV 73
Query: 421 DAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYAGISRILM 480
+A D G T LH A + GH ++ E+L+K GADV A + +P+ +A + I +L+
Sbjct: 74 NALDFSGSTPLHLAAKRGHLEIVEVLLKYGADVNADDTIGSTPLHLAADTGHLEIVEVLL 133
Query: 481 HGGA---TKDGIQQTNLRQVSIQFGN 503
GA +D +T +SI GN
Sbjct: 134 KYGADVNAQDKFGKTAF-DISIDNGN 158
Score = 82.4 bits (202), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 52/125 (41%), Positives = 79/125 (63%), Gaps = 7/125 (5%)
Query: 240 TWG--PIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEXXXXXXXXXXXXNGA 297
T+G P+HLA R GHLE++++LL GA+VNAL G+T LHLA + GA
Sbjct: 45 TYGDTPLHLAARVGHLEIVEVLLKNGADVNALDFSGSTPLHLAAKRGHLEIVEVLLKYGA 104
Query: 298 RPDIRNARD--GDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRL 355
D+ NA D G TPLH+ A G+ ++V++LL+ GA+ ++K GKTA+D++ + G+ L
Sbjct: 105 --DV-NADDTIGSTPLHLAADTGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDL 161
Query: 356 FDALK 360
+ L+
Sbjct: 162 AEILQ 166
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/146 (33%), Positives = 83/146 (56%), Gaps = 23/146 (15%)
Query: 303 NARD--GDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALK 360
NA D GDTPLH+ A +G+ ++V++LL+ GA+ + SG T
Sbjct: 41 NAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALDFSGST------------------ 82
Query: 361 LGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDV 420
L +AA++G + ++ L++ GA +N D G T LH A+ G +E+V +L+ G DV
Sbjct: 83 ---PLHLAAKRGHLEIVEVLLKYGADVNADDTIGSTPLHLAADTGHLEIVEVLLKYGADV 139
Query: 421 DAKDEDGYTALHCAVESGHTDVTELL 446
+A+D+ G TA ++++G+ D+ E+L
Sbjct: 140 NAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 80/169 (47%), Gaps = 26/169 (15%)
Query: 247 ALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEXXXXXXXXXXXXNGARPDIRNARD 306
A R G + +++L+ GA+VNA G+T LHLA NGA D+ NA D
Sbjct: 21 AARAGQDDEVRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGA--DV-NALD 77
Query: 307 --GDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDS 364
G TPLH+ A G+ ++V++LL+ GA+ + G T +AA+ GH
Sbjct: 78 FSGSTPLHLAAKRGHLEIVEVLLKYGADVNADDTIGSTPLHLAADTGH------------ 125
Query: 365 LCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRML 413
+ ++ L++ GA +N +D G TA + G ++ +L
Sbjct: 126 ---------LEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 55.5 bits (132), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 59/121 (48%), Gaps = 3/121 (2%)
Query: 164 NPAD--SADAQGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPXXXXXXXXXXX 221
N AD + D G T LH+A +IV++LL+ G DV + G STP
Sbjct: 36 NGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALDFSG-STPLHLAAKRGHLE 94
Query: 222 XXXXXXXRKASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAV 281
A +T P+HLA GHLE++++LL GA+VNA K G TA +++
Sbjct: 95 IVEVLLKYGADVNADDTIGSTPLHLAADTGHLEIVEVLLKYGADVNAQDKFGKTAFDISI 154
Query: 282 E 282
+
Sbjct: 155 D 155
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 82.4 bits (202), Expect = 5e-16, Method: Composition-based stats.
Identities = 46/142 (32%), Positives = 72/142 (50%), Gaps = 21/142 (14%)
Query: 315 ASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSLCVAARKGEV 374
A G + V++L+ GA+ + G T + GH +
Sbjct: 22 ARAGQDDEVRILMANGADVNANDWFGITPLHLVVNNGH---------------------L 60
Query: 375 RTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCA 434
++ L++ A +N D GWT LH A+++G +E+V +L+ G DV+A D GYT LH A
Sbjct: 61 EIIEVLLKYAADVNASDKSGWTPLHLAAYRGHLEIVEVLLKYGADVNAMDYQGYTPLHLA 120
Query: 435 VESGHTDVTELLVKKGADVEAR 456
E GH ++ E+L+K GADV A+
Sbjct: 121 AEDGHLEIVEVLLKYGADVNAQ 142
Score = 81.3 bits (199), Expect = 1e-15, Method: Composition-based stats.
Identities = 50/146 (34%), Positives = 77/146 (52%), Gaps = 4/146 (2%)
Query: 361 LGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDV 420
LG L AAR G+ ++ L+ GA +N D G T LH G +E++ +L+ DV
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADV 73
Query: 421 DAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYAGISRILM 480
+A D+ G+T LH A GH ++ E+L+K GADV A + +P+ +A + I +L+
Sbjct: 74 NASDKSGWTPLHLAAYRGHLEIVEVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLL 133
Query: 481 HGGA---TKDGIQQTNLRQVSIQFGN 503
GA +D +T +SI GN
Sbjct: 134 KYGADVNAQDKFGKTAF-DISIDNGN 158
Score = 77.8 bits (190), Expect = 2e-14, Method: Composition-based stats.
Identities = 51/156 (32%), Positives = 87/156 (55%), Gaps = 26/156 (16%)
Query: 295 NGARPDIRNARD--GDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGH 352
NGA D+ NA D G TPLH+ + G+ +++++LL+ A+ +KSG T
Sbjct: 36 NGA--DV-NANDWFGITPLHLVVNNGHLEIIEVLLKYAADVNASDKSGWTP--------- 83
Query: 353 SRLFDALKLGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRM 412
L +AA +G + ++ L++ GA +N D G+T LH A+ G +E+V +
Sbjct: 84 ------------LHLAAYRGHLEIVEVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEV 131
Query: 413 LIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVK 448
L+ G DV+A+D+ G TA ++++G+ D+ E+L K
Sbjct: 132 LLKYGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 67.8 bits (164), Expect = 1e-11, Method: Composition-based stats.
Identities = 55/188 (29%), Positives = 85/188 (45%), Gaps = 36/188 (19%)
Query: 173 GQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPXXXXXXXXXXXXXXXXXXRKAS 232
G+ LL A A + D V++L+ G DV + G TP A
Sbjct: 15 GKKLLEAARAGQ-DDEVRILMANGADVNANDWFGI-TPLHLVVNNGHLEIIEVLLKYAAD 72
Query: 233 TERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEXXXXXXXXXX 292
S+ S W P+HLA GHLE++++LL GA+VNA+ G T LHLA E
Sbjct: 73 VNASDKSGWTPLHLAAYRGHLEIVEVLLKYGADVNAMDYQGYTPLHLAAED--------- 123
Query: 293 XXNGARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGH 352
G+ ++V++LL+ GA+ ++K GKTA+D++ + G+
Sbjct: 124 -------------------------GHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGN 158
Query: 353 SRLFDALK 360
L + L+
Sbjct: 159 EDLAEILQ 166
Score = 52.0 bits (123), Expect = 8e-07, Method: Composition-based stats.
Identities = 38/143 (26%), Positives = 68/143 (47%), Gaps = 38/143 (26%)
Query: 140 LVLLVKDGEMDDLREVLERSDPAWNPADSADAQGQTLLHIAIAQRRPDIVQLLLEFGPDV 199
L L+V +G ++ + +L+ + +++D G T LH+A + +IV++LL++G DV
Sbjct: 51 LHLVVNNGHLEIIEVLLKYA----ADVNASDKSGWTPLHLAAYRGHLEIVEVLLKYGADV 106
Query: 200 ESQGRCGCSTPXXXXXXXXXXXXXXXXXXRKASTERSETSTWGPIHLALRGGHLEVLKLL 259
+ G + P+HLA GHLE++++L
Sbjct: 107 NAMDYQG----------------------------------YTPLHLAAEDGHLEIVEVL 132
Query: 260 LIKGANVNALTKDGNTALHLAVE 282
L GA+VNA K G TA ++++
Sbjct: 133 LKYGADVNAQDKFGKTAFDISID 155
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 82.4 bits (202), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 50/132 (37%), Positives = 79/132 (59%), Gaps = 5/132 (3%)
Query: 231 ASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEXXXXXXXX 290
A ++ S P+HLA GHLE++++LL GA+VNA+ G+T LHLA
Sbjct: 38 ADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIXGSTPLHLAALIGHLEIVE 97
Query: 291 XXXXNGARPDIRNARD--GDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAA 348
+GA NA D GDTPLH+ A +G+ ++V++LL+ GA+ ++K GKTA+D++
Sbjct: 98 VLLKHGADV---NAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTAFDISI 154
Query: 349 ECGHSRLFDALK 360
+ G+ L + L+
Sbjct: 155 DNGNEDLAEILQ 166
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/146 (36%), Positives = 79/146 (54%), Gaps = 4/146 (2%)
Query: 361 LGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDV 420
LG L AAR G+ ++ L+ GA +N D G T LH A+ G +E+V +L+ G DV
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADV 73
Query: 421 DAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYAGISRILM 480
+A D G T LH A GH ++ E+L+K GADV A + +P+ +A + + I +L+
Sbjct: 74 NAIDIXGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLL 133
Query: 481 HGGA---TKDGIQQTNLRQVSIQFGN 503
GA +D +T +SI GN
Sbjct: 134 KHGADVNAQDKFGKTAF-DISIDNGN 158
Score = 75.1 bits (183), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 83/154 (53%), Gaps = 22/154 (14%)
Query: 295 NGARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSR 354
NGA + +A G TPLH+ A+ G+ ++V++LL+ GA+ + G T +AA GH
Sbjct: 36 NGADVNATDAS-GLTPLHLAATYGHLEIVEVLLKHGADVNAIDIXGSTPLHLAALIGH-- 92
Query: 355 LFDALKLGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLI 414
+ ++ L++ GA +N D G T LH A+ G +E+V +L+
Sbjct: 93 -------------------LEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLL 133
Query: 415 DKGIDVDAKDEDGYTALHCAVESGHTDVTELLVK 448
G DV+A+D+ G TA ++++G+ D+ E+L K
Sbjct: 134 KHGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 63/123 (51%), Gaps = 7/123 (5%)
Query: 164 NPAD--SADAQGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPXXXXXXXXXXX 221
N AD + DA G T LH+A +IV++LL+ G DV + G STP
Sbjct: 36 NGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIXG-STPLHLAALIGHLE 94
Query: 222 XXXXXXXRKASTERSETSTWG--PIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHL 279
K + + TWG P+HLA GHLE++++LL GA+VNA K G TA +
Sbjct: 95 IVEVLL--KHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTAFDI 152
Query: 280 AVE 282
+++
Sbjct: 153 SID 155
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 82.0 bits (201), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 87/271 (32%), Positives = 125/271 (46%), Gaps = 14/271 (5%)
Query: 243 PIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEXXXXXXXXXXXXNGARPDIR 302
P+HLA + +++LLL GA+V+A K G LH A +GA
Sbjct: 61 PLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGA---CV 117
Query: 303 NARD--GDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECG-HSRLFDAL 359
NA D TPLH AS ++ LLL GA+ + N GK+A D+A RL
Sbjct: 118 NAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEF 177
Query: 360 KLGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGW-TALHRAS---FKGKIEVVRMLID 415
K G SL AAR+ ++ +++ + A IN K TALH A + +V +L+
Sbjct: 178 K-GHSLLQAAREADLAKVKKTL-ALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLR 235
Query: 416 KGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYAGI 475
KG +V+ K++D T LH A E H DV E+L K GA + A S + + A +
Sbjct: 236 KGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQT 295
Query: 476 SRILMHGGATKDGIQQTNLRQVSIQFGNGKV 506
R+L+ G+ I + Q GN V
Sbjct: 296 CRLLLSYGSDPSIISLQGF--TAAQMGNEAV 324
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 82/312 (26%), Positives = 125/312 (40%), Gaps = 45/312 (14%)
Query: 168 SADAQGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPXXXXXXXXXXXXXXXXX 227
++D + T LH+A R IVQLLL+ G DV ++ + G P
Sbjct: 53 ASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGL-VPLHNACSYGHYEVTELLL 111
Query: 228 XRKASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLA-----VE 282
A + + P+H A +EV LLL GA+ + G +A+ +A E
Sbjct: 112 KHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRE 171
Query: 283 XXXXXXXXXXXXNGARP---------------DIRNARDGDTPLHIT-ASL--GYEQMVK 324
AR + + + +T LH ASL +Q+ +
Sbjct: 172 RLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAE 231
Query: 325 LLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSLCVAARKGEVRTMQRLIEAG 384
LLL+KGAN +NK T VAAE H+ + M+ L + G
Sbjct: 232 LLLRKGANVNEKNKDFMTPLHVAAERAHNDV---------------------MEVLHKHG 270
Query: 385 AAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTE 444
A +N D G TALHRA+ G ++ R+L+ G D G+TA E+ ++E
Sbjct: 271 AKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTAAQMGNEAVQQILSE 330
Query: 445 LLVKKGADVEAR 456
+ +DV+ R
Sbjct: 331 STPMRTSDVDYR 342
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/146 (34%), Positives = 71/146 (48%), Gaps = 2/146 (1%)
Query: 340 GKTAYDVAAECGHSRLFDALKLGDSLCVAARKG-EVRTMQRLIEAGAAINGKDLHGWTAL 398
GK+A D+A + L K D L AAR G E + M L + D T L
Sbjct: 4 GKSALDLADPSAKAVLTGEYK-KDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPL 62
Query: 399 HRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTS 458
H A+ ++ +V++L+ G DV AKD+ G LH A GH +VTELL+K GA V A
Sbjct: 63 HLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDL 122
Query: 459 KNVSPMQIAECLHYAGISRILMHGGA 484
+P+ A + + +L+ GA
Sbjct: 123 WQFTPLHEAASKNRVEVCSLLLSHGA 148
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 81.6 bits (200), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 50/132 (37%), Positives = 79/132 (59%), Gaps = 5/132 (3%)
Query: 231 ASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEXXXXXXXX 290
A ++ S P+HLA GHLE++++LL GA+VNA+ G+T LHLA
Sbjct: 38 ADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIMGSTPLHLAALIGHLEIVE 97
Query: 291 XXXXNGARPDIRNARD--GDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAA 348
+GA NA D GDTPLH+ A +G+ ++V++LL+ GA+ ++K GKTA+D++
Sbjct: 98 VLLKHGADV---NAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTAFDISI 154
Query: 349 ECGHSRLFDALK 360
+ G+ L + L+
Sbjct: 155 DNGNEDLAEILQ 166
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/146 (36%), Positives = 79/146 (54%), Gaps = 4/146 (2%)
Query: 361 LGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDV 420
LG L AAR G+ ++ L+ GA +N D G T LH A+ G +E+V +L+ G DV
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADV 73
Query: 421 DAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYAGISRILM 480
+A D G T LH A GH ++ E+L+K GADV A + +P+ +A + + I +L+
Sbjct: 74 NAIDIMGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLL 133
Query: 481 HGGA---TKDGIQQTNLRQVSIQFGN 503
GA +D +T +SI GN
Sbjct: 134 KHGADVNAQDKFGKTAF-DISIDNGN 158
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 83/154 (53%), Gaps = 22/154 (14%)
Query: 295 NGARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSR 354
NGA + +A G TPLH+ A+ G+ ++V++LL+ GA+ + G T +AA GH
Sbjct: 36 NGADVNATDAS-GLTPLHLAATYGHLEIVEVLLKHGADVNAIDIMGSTPLHLAALIGH-- 92
Query: 355 LFDALKLGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLI 414
+ ++ L++ GA +N D G T LH A+ G +E+V +L+
Sbjct: 93 -------------------LEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLL 133
Query: 415 DKGIDVDAKDEDGYTALHCAVESGHTDVTELLVK 448
G DV+A+D+ G TA ++++G+ D+ E+L K
Sbjct: 134 KHGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 63/123 (51%), Gaps = 7/123 (5%)
Query: 164 NPAD--SADAQGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPXXXXXXXXXXX 221
N AD + DA G T LH+A +IV++LL+ G DV + G STP
Sbjct: 36 NGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIMG-STPLHLAALIGHLE 94
Query: 222 XXXXXXXRKASTERSETSTWG--PIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHL 279
K + + TWG P+HLA GHLE++++LL GA+VNA K G TA +
Sbjct: 95 IVEVLL--KHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTAFDI 152
Query: 280 AVE 282
+++
Sbjct: 153 SID 155
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 49/145 (33%), Positives = 73/145 (50%)
Query: 361 LGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDV 420
LG L AA G+ ++ L+ GA +N D +G T LH A+ G++E+V +L+ G DV
Sbjct: 6 LGKKLLEAAAAGQDDEVRILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGADV 65
Query: 421 DAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYAGISRILM 480
+A D G T LH A GH ++ E+L+K GADV A +P+ +A I +L+
Sbjct: 66 NASDSAGITPLHLAAYDGHLEIVEVLLKHGADVNAYDRAGWTPLHLAALSGQLEIVEVLL 125
Query: 481 HGGATKDGIQQTNLRQVSIQFGNGK 505
GA + L I G+
Sbjct: 126 KHGADVNAQDALGLTAFDISINQGQ 150
Score = 78.6 bits (192), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 77/146 (52%), Gaps = 23/146 (15%)
Query: 303 NARD--GDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALK 360
NA D G TPLH+ A+ G ++V++LL+ GA+ + +G T
Sbjct: 33 NATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNASDSAGIT------------------ 74
Query: 361 LGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDV 420
L +AA G + ++ L++ GA +N D GWT LH A+ G++E+V +L+ G DV
Sbjct: 75 ---PLHLAAYDGHLEIVEVLLKHGADVNAYDRAGWTPLHLAALSGQLEIVEVLLKHGADV 131
Query: 421 DAKDEDGYTALHCAVESGHTDVTELL 446
+A+D G TA ++ G D+ E+L
Sbjct: 132 NAQDALGLTAFDISINQGQEDLAEIL 157
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 43/130 (33%), Positives = 69/130 (53%), Gaps = 1/130 (0%)
Query: 231 ASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEXXXXXXXX 290
A ++ + P+HLA G LE++++LL GA+VNA G T LHLA
Sbjct: 30 ADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNASDSAGITPLHLAAYDGHLEIVE 89
Query: 291 XXXXNGARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAEC 350
+GA + + R G TPLH+ A G ++V++LL+ GA+ ++ G TA+D++
Sbjct: 90 VLLKHGADVNAYD-RAGWTPLHLAALSGQLEIVEVLLKHGADVNAQDALGLTAFDISINQ 148
Query: 351 GHSRLFDALK 360
G L + L+
Sbjct: 149 GQEDLAEILQ 158
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 58/120 (48%), Gaps = 3/120 (2%)
Query: 164 NPAD--SADAQGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPXXXXXXXXXXX 221
N AD + D G T LH+A A + +IV++LL+ G DV + G TP
Sbjct: 28 NGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNASDSAGI-TPLHLAAYDGHLE 86
Query: 222 XXXXXXXRKASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAV 281
A + + W P+HLA G LE++++LL GA+VNA G TA +++
Sbjct: 87 IVEVLLKHGADVNAYDRAGWTPLHLAALSGQLEIVEVLLKHGADVNAQDALGLTAFDISI 146
>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8K|B Chain B, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8L|A Chain A, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|B Chain B, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|C Chain C, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|D Chain D, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
Length = 337
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 70/212 (33%), Positives = 107/212 (50%), Gaps = 28/212 (13%)
Query: 296 GARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRL 355
GA + + G TPLH + E +V+LLL+ GA+ +R K+G T + +AA G +L
Sbjct: 48 GANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIAGSVKL 107
Query: 356 FDAL--KLGD----------SLCVAARKGEVRTMQRLIEAGAAIN-----GKDLH----- 393
K D + AA G+V+ ++ L + GA +N +D
Sbjct: 108 LKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKG 167
Query: 394 GWTALHRASFKGKIEVVRMLIDK-GIDVDAKDEDGYTAL-HCAVESGHTDV---TELLVK 448
G TAL A+ KG +EV+++L+D+ G DV+A D G AL H + S +DV T LL+
Sbjct: 168 GATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLD 227
Query: 449 KGADVEARTSKNVSPMQIA-ECLHYAGISRIL 479
GADV R + +P+ +A E H + R+L
Sbjct: 228 HGADVNVRGERGKTPLILAVEKKHLGLVQRLL 259
Score = 62.8 bits (151), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 87/316 (27%), Positives = 126/316 (39%), Gaps = 32/316 (10%)
Query: 154 EVLERSDPAWNPADS----ADAQGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCST 209
E + ++P P S A + LL A+ D+VQ LLE G +V Q G T
Sbjct: 2 ESRDHNNPQEGPTSSSGRRAAVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWT 61
Query: 210 PXXXXXXXXXXXXXXXXXXRKASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNAL 269
P A + + P LA G +++LKL L KGA+VN
Sbjct: 62 PLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIAGSVKLLKLFLSKGADVNEC 121
Query: 270 TKDGNTALHLAVEXXXXXXXXXXXXNGARPDIRNA---------RDGDTPLHITASLGYE 320
G TA A GA ++R + G T L A G+
Sbjct: 122 DFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHV 181
Query: 321 QMVKLLLQK-GANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSLCVAARKGEVRTMQR 379
+++K+LL + GA+ + G+ A L AL D V A
Sbjct: 182 EVLKILLDEMGADVNACDNMGRNA-----------LIHALLSSDDSDVEA------ITHL 224
Query: 380 LIEAGAAINGKDLHGWTALHRASFKGKIEVV-RMLIDKGIDVDAKDEDGYTALHCAVESG 438
L++ GA +N + G T L A K + +V R+L + I+++ D DG TAL AVE
Sbjct: 225 LLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELK 284
Query: 439 HTDVTELLVKKGADVE 454
+ ELL K+GA +
Sbjct: 285 LKKIAELLCKRGASTD 300
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 94/366 (25%), Positives = 145/366 (39%), Gaps = 88/366 (24%)
Query: 128 SGIKIMFVGSPVLVLLVKDGEMDDLREVLERSDPAWNPADSADAQGQTLLHIAIAQRRPD 187
SG + + +L+ V++ ++D ++++LE N + G T LH A+ R D
Sbjct: 17 SGRRAAVEDNHLLIKAVQNEDVDLVQQLLE---GGANVNFQEEEGGWTPLHNAVQMSRED 73
Query: 188 IVQLLLEFGPDVESQGRCGCSTPXXXXXXXXXXXXXXXXXXRKASTERSETSTWGPIHLA 247
IV+LLL G D + + G + P LA
Sbjct: 74 IVELLLRHGADPVLRKKNGAT----------------------------------PFILA 99
Query: 248 LRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEXXXXXXXXXXXXNGARPDIRNARDG 307
G +++LKL L KGA+VN G TA A
Sbjct: 100 AIAGSVKLLKLFLSKGADVNECDFYGFTAFMEA--------------------------- 132
Query: 308 DTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSLCV 367
A G + +K L ++GAN +R K+ K + + G + L D
Sbjct: 133 -------AVYGKVKALKFLYKRGANVNLRRKT-KEDQERLRKGGATALMD---------- 174
Query: 368 AARKGEVRTMQRLI-EAGAAINGKDLHGWTALHRA---SFKGKIE-VVRMLIDKGIDVDA 422
AA KG V ++ L+ E GA +N D G AL A S +E + +L+D G DV+
Sbjct: 175 AAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNV 234
Query: 423 KDEDGYTALHCAVESGHTD-VTELLVKKGADVEARTSKNVSPMQIAECLHYAGISRILMH 481
+ E G T L AVE H V LL ++ ++ S + + +A L I+ +L
Sbjct: 235 RGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCK 294
Query: 482 GGATKD 487
GA+ D
Sbjct: 295 RGASTD 300
>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease
Length = 285
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 70/212 (33%), Positives = 107/212 (50%), Gaps = 28/212 (13%)
Query: 296 GARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRL 355
GA + + G TPLH + E +V+LLL+ GA+ +R K+G T + +AA G +L
Sbjct: 28 GANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKL 87
Query: 356 FDAL--KLGD----------SLCVAARKGEVRTMQRLIEAGAAIN-----GKDLH----- 393
K D + AA G+V+ ++ L + GA +N +D
Sbjct: 88 LKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKG 147
Query: 394 GWTALHRASFKGKIEVVRMLIDK-GIDVDAKDEDGYTAL-HCAVESGHTDV---TELLVK 448
G TAL A+ KG +EV+++L+D+ G DV+A D G AL H + S +DV T LL+
Sbjct: 148 GATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLD 207
Query: 449 KGADVEARTSKNVSPMQIA-ECLHYAGISRIL 479
GADV R + +P+ +A E H + R+L
Sbjct: 208 HGADVNVRGERGKTPLILAVEKKHLGLVQRLL 239
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 83/294 (28%), Positives = 118/294 (40%), Gaps = 28/294 (9%)
Query: 169 ADAQGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPXXXXXXXXXXXXXXXXXX 228
A + LL A+ D+VQ LLE G +V Q G TP
Sbjct: 1 AAVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLR 60
Query: 229 RKASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEXXXXXX 288
A + + P LA G +++LKL L KGA+VN G TA A
Sbjct: 61 HGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKA 120
Query: 289 XXXXXXNGARPDIRNA---------RDGDTPLHITASLGYEQMVKLLL-QKGANKYIRNK 338
GA ++R + G T L A G+ +++K+LL + GA+ +
Sbjct: 121 LKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDN 180
Query: 339 SGKTAYDVAAECGHSRLFDALKLGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTAL 398
G+ A L AL D V A L++ GA +N + G T L
Sbjct: 181 MGRNA-----------LIHALLSSDDSDVEA------ITHLLLDHGADVNVRGERGKTPL 223
Query: 399 HRASFKGKIEVV-RMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGA 451
A K + +V R+L + I+++ D DG TAL AVE + ELL K+GA
Sbjct: 224 ILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGA 277
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 92/352 (26%), Positives = 137/352 (38%), Gaps = 85/352 (24%)
Query: 142 LLVKDGEMDDLREVLERSDPAWNPADSADAQGQTLLHIAIAQRRPDIVQLLLEFGPDVES 201
LL+K + +D+ V + + N + G T LH A+ R DIV+LLL G D
Sbjct: 8 LLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVL 67
Query: 202 QGRCGCSTPXXXXXXXXXXXXXXXXXXRKASTERSETSTWGPIHLALRGGHLEVLKLLLI 261
+ + G + P LA G +++LKL L
Sbjct: 68 RKKNGAT----------------------------------PFLLAAIAGSVKLLKLFLS 93
Query: 262 KGANVNALTKDGNTALHLAVEXXXXXXXXXXXXNGARPDIRNARDGDTPLHITASLGYEQ 321
KGA+VN G TA A A G +
Sbjct: 94 KGADVNECDFYGFTAFMEA----------------------------------AVYGKVK 119
Query: 322 MVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSLCVAARKGEVRTMQRLI 381
+K L ++GAN +R K+ K + + G + L D AA KG V ++ L+
Sbjct: 120 ALKFLYKRGANVNLRRKT-KEDQERLRKGGATALMD----------AAEKGHVEVLKILL 168
Query: 382 -EAGAAINGKDLHGWTALHRA---SFKGKIE-VVRMLIDKGIDVDAKDEDGYTALHCAVE 436
E GA +N D G AL A S +E + +L+D G DV+ + E G T L AVE
Sbjct: 169 DEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVE 228
Query: 437 SGHTD-VTELLVKKGADVEARTSKNVSPMQIAECLHYAGISRILMHGGATKD 487
H V LL ++ ++ S + + +A L I+ +L GA+ D
Sbjct: 229 KKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTD 280
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 64/239 (26%), Positives = 106/239 (44%), Gaps = 55/239 (23%)
Query: 230 KASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEXXXXXXX 289
K+ R++ + +H A GH E+++ LL G VN D + A
Sbjct: 30 KSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVN----DKDDA------------- 72
Query: 290 XXXXXNGARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAE 349
G +PLHI AS G +++VK LL KGA N++G T AA
Sbjct: 73 -----------------GWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAA- 114
Query: 350 CGHSRLFDALKLGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEV 409
+ + E+ M L+E GA + KD + TA+HRA+ KG +++
Sbjct: 115 ------------------SKNRHEIAVM--LLEGGANPDAKDHYEATAMHRAAAKGNLKM 154
Query: 410 VRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAE 468
+ +L+ + +D +G T LH A + + +LLV +GA + + +P+Q+A+
Sbjct: 155 IHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVAK 213
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 58/224 (25%), Positives = 96/224 (42%), Gaps = 40/224 (17%)
Query: 135 VGSPVLVLLVKDGEMDDLREVLERSDPAWNPADSADAQGQTLLHIAIAQRRPDIVQLLLE 194
V + ++ L G++++L+E + +D + A D +T LH A + +IV+ LL+
Sbjct: 5 VSNLMVCNLAYSGKLEELKESI-LADKSL--ATRTDQDSRTALHWACSAGHTEIVEFLLQ 61
Query: 195 FGPDVESQGRCGCSTPXXXXXXXXXXXXXXXXXXRKASTERSETSTWGPIHLALRGGHLE 254
G V + G W P+H+A G E
Sbjct: 62 LGVPVNDKDDAG----------------------------------WSPLHIAASAGRDE 87
Query: 255 VLKLLLIKGANVNALTKDGNTALHLAVEXXXXXXXXXXXXNGARPDIRNARDGDTPLHIT 314
++K LL KGA VNA+ ++G T LH A GA PD ++ + T +H
Sbjct: 88 IVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEA-TAMHRA 146
Query: 315 ASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDA 358
A+ G +M+ +LL A+ I++ G T +A C R+ +A
Sbjct: 147 AAKGNLKMIHILLYYKASTNIQDTEGNTPLHLA--CDEERVEEA 188
Score = 62.0 bits (149), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 64/124 (51%), Gaps = 1/124 (0%)
Query: 365 LCVAARKGEVRTMQRLIEAGAAINGK-DLHGWTALHRASFKGKIEVVRMLIDKGIDVDAK 423
+C A G++ ++ I A ++ + D TALH A G E+V L+ G+ V+ K
Sbjct: 10 VCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDK 69
Query: 424 DEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYAGISRILMHGG 483
D+ G++ LH A +G ++ + L+ KGA V A +P+ A + I+ +L+ GG
Sbjct: 70 DDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGG 129
Query: 484 ATKD 487
A D
Sbjct: 130 ANPD 133
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 66/125 (52%), Gaps = 1/125 (0%)
Query: 368 AARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDG 427
A G ++ L++ G +N KD GW+ LH A+ G+ E+V+ L+ KG V+A +++G
Sbjct: 47 ACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNG 106
Query: 428 YTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYAGISRILMHGGATKD 487
T LH A ++ +L++ GA+ +A+ + M A + IL++ A+ +
Sbjct: 107 CTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTN 166
Query: 488 GIQQT 492
IQ T
Sbjct: 167 -IQDT 170
Score = 55.1 bits (131), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 73/183 (39%), Gaps = 35/183 (19%)
Query: 165 PADSADAQGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPXXXXXXXXXXXXXX 224
P + D G + LHIA + R +IV+ LL G V + + GC+
Sbjct: 65 PVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCT---------------- 108
Query: 225 XXXXRKASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEXX 284
P+H A E+ +LL GAN +A TA+H A
Sbjct: 109 ------------------PLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKG 150
Query: 285 XXXXXXXXXXNGARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAY 344
A +I++ +G+TPLH+ + KLL+ +GA+ YI NK KT
Sbjct: 151 NLKMIHILLYYKASTNIQDT-EGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPL 209
Query: 345 DVA 347
VA
Sbjct: 210 QVA 212
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 48/93 (51%), Gaps = 3/93 (3%)
Query: 402 SFKGKIEVVR--MLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSK 459
++ GK+E ++ +L DK + D+D TALH A +GHT++ E L++ G V +
Sbjct: 14 AYSGKLEELKESILADKSL-ATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDA 72
Query: 460 NVSPMQIAECLHYAGISRILMHGGATKDGIQQT 492
SP+ IA I + L+ GA + + Q
Sbjct: 73 GWSPLHIAASAGRDEIVKALLGKGAQVNAVNQN 105
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 64/239 (26%), Positives = 106/239 (44%), Gaps = 55/239 (23%)
Query: 230 KASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEXXXXXXX 289
K+ R++ + +H A GH E+++ LL G VN D + A
Sbjct: 31 KSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVN----DKDDA------------- 73
Query: 290 XXXXXNGARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAE 349
G +PLHI AS G +++VK LL KGA N++G T AA
Sbjct: 74 -----------------GWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAA- 115
Query: 350 CGHSRLFDALKLGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEV 409
+ + E+ M L+E GA + KD + TA+HRA+ KG +++
Sbjct: 116 ------------------SKNRHEIAVM--LLEGGANPDAKDHYEATAMHRAAAKGNLKM 155
Query: 410 VRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAE 468
+ +L+ + +D +G T LH A + + +LLV +GA + + +P+Q+A+
Sbjct: 156 IHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVAK 214
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 58/224 (25%), Positives = 96/224 (42%), Gaps = 40/224 (17%)
Query: 135 VGSPVLVLLVKDGEMDDLREVLERSDPAWNPADSADAQGQTLLHIAIAQRRPDIVQLLLE 194
V + ++ L G++++L+E + +D + A D +T LH A + +IV+ LL+
Sbjct: 6 VSNLMVCNLAYSGKLEELKESI-LADKSL--ATRTDQDSRTALHWACSAGHTEIVEFLLQ 62
Query: 195 FGPDVESQGRCGCSTPXXXXXXXXXXXXXXXXXXRKASTERSETSTWGPIHLALRGGHLE 254
G V + G W P+H+A G E
Sbjct: 63 LGVPVNDKDDAG----------------------------------WSPLHIAASAGRDE 88
Query: 255 VLKLLLIKGANVNALTKDGNTALHLAVEXXXXXXXXXXXXNGARPDIRNARDGDTPLHIT 314
++K LL KGA VNA+ ++G T LH A GA PD ++ + T +H
Sbjct: 89 IVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEA-TAMHRA 147
Query: 315 ASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDA 358
A+ G +M+ +LL A+ I++ G T +A C R+ +A
Sbjct: 148 AAKGNLKMIHILLYYKASTNIQDTEGNTPLHLA--CDEERVEEA 189
Score = 62.0 bits (149), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 64/124 (51%), Gaps = 1/124 (0%)
Query: 365 LCVAARKGEVRTMQRLIEAGAAINGK-DLHGWTALHRASFKGKIEVVRMLIDKGIDVDAK 423
+C A G++ ++ I A ++ + D TALH A G E+V L+ G+ V+ K
Sbjct: 11 VCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDK 70
Query: 424 DEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYAGISRILMHGG 483
D+ G++ LH A +G ++ + L+ KGA V A +P+ A + I+ +L+ GG
Sbjct: 71 DDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGG 130
Query: 484 ATKD 487
A D
Sbjct: 131 ANPD 134
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 66/125 (52%), Gaps = 1/125 (0%)
Query: 368 AARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDG 427
A G ++ L++ G +N KD GW+ LH A+ G+ E+V+ L+ KG V+A +++G
Sbjct: 48 ACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNG 107
Query: 428 YTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYAGISRILMHGGATKD 487
T LH A ++ +L++ GA+ +A+ + M A + IL++ A+ +
Sbjct: 108 CTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTN 167
Query: 488 GIQQT 492
IQ T
Sbjct: 168 -IQDT 171
Score = 55.1 bits (131), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 73/183 (39%), Gaps = 35/183 (19%)
Query: 165 PADSADAQGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPXXXXXXXXXXXXXX 224
P + D G + LHIA + R +IV+ LL G V + + GC+
Sbjct: 66 PVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCT---------------- 109
Query: 225 XXXXRKASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEXX 284
P+H A E+ +LL GAN +A TA+H A
Sbjct: 110 ------------------PLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKG 151
Query: 285 XXXXXXXXXXNGARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAY 344
A +I++ +G+TPLH+ + KLL+ +GA+ YI NK KT
Sbjct: 152 NLKMIHILLYYKASTNIQDT-EGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPL 210
Query: 345 DVA 347
VA
Sbjct: 211 QVA 213
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 48/93 (51%), Gaps = 3/93 (3%)
Query: 402 SFKGKIEVVR--MLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSK 459
++ GK+E ++ +L DK + D+D TALH A +GHT++ E L++ G V +
Sbjct: 15 AYSGKLEELKESILADKSL-ATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDA 73
Query: 460 NVSPMQIAECLHYAGISRILMHGGATKDGIQQT 492
SP+ IA I + L+ GA + + Q
Sbjct: 74 GWSPLHIAASAGRDEIVKALLGKGAQVNAVNQN 106
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 77.0 bits (188), Expect = 3e-14, Method: Composition-based stats.
Identities = 41/96 (42%), Positives = 60/96 (62%)
Query: 361 LGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDV 420
LG L AAR G+ ++ L+ GA +N KD +G T L+ A+ G +E+V +L+ G DV
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADV 73
Query: 421 DAKDEDGYTALHCAVESGHTDVTELLVKKGADVEAR 456
+A D G+T LH A GH ++ E+L+K GADV A+
Sbjct: 74 NAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQ 109
Score = 65.9 bits (159), Expect = 5e-11, Method: Composition-based stats.
Identities = 37/107 (34%), Positives = 59/107 (55%)
Query: 398 LHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEART 457
L A+ G+ + VR+L+ G DV+AKDE G T L+ A GH ++ E+L+K GADV A
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVD 77
Query: 458 SKNVSPMQIAECLHYAGISRILMHGGATKDGIQQTNLRQVSIQFGNG 504
+ +P+ +A + + I+ +L+ GA + + I GNG
Sbjct: 78 AIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNG 124
Score = 60.1 bits (144), Expect = 3e-09, Method: Composition-based stats.
Identities = 38/134 (28%), Positives = 68/134 (50%), Gaps = 21/134 (15%)
Query: 315 ASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSLCVAARKGEV 374
A G + V++L+ GA+ +++ G T +A GH +
Sbjct: 22 ARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGH---------------------L 60
Query: 375 RTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCA 434
++ L++ GA +N D G+T LH A+F G +E+ +L+ G DV+A+D+ G TA +
Sbjct: 61 EIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDIS 120
Query: 435 VESGHTDVTELLVK 448
+ +G+ D+ E+L K
Sbjct: 121 IGNGNEDLAEILQK 134
Score = 59.3 bits (142), Expect = 5e-09, Method: Composition-based stats.
Identities = 41/116 (35%), Positives = 67/116 (57%), Gaps = 5/116 (4%)
Query: 247 ALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEXXXXXXXXXXXXNGARPDIRNARD 306
A R G + +++L+ GA+VNA + G T L+LA NGA D+ NA D
Sbjct: 21 AARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGA--DV-NAVD 77
Query: 307 --GDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALK 360
G TPLH+ A +G+ ++ ++LL+ GA+ ++K GKTA+D++ G+ L + L+
Sbjct: 78 AIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQ 133
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 77.0 bits (188), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 64/239 (26%), Positives = 106/239 (44%), Gaps = 55/239 (23%)
Query: 230 KASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEXXXXXXX 289
K+ R++ + +H A GH E+++ LL G VN D + A
Sbjct: 30 KSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVN----DKDDA------------- 72
Query: 290 XXXXXNGARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAE 349
G +PLHI AS G +++VK LL KGA+ N++G T AA
Sbjct: 73 -----------------GWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAA- 114
Query: 350 CGHSRLFDALKLGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEV 409
+ + E+ M L+E GA + KD + TA+HRA+ KG +++
Sbjct: 115 ------------------SKNRHEIAVM--LLEGGANPDAKDHYDATAMHRAAAKGNLKM 154
Query: 410 VRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAE 468
V +L+ + +D +G T LH A + + + LV +GA + + +P+Q+A+
Sbjct: 155 VHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAK 213
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 64/125 (51%), Gaps = 1/125 (0%)
Query: 365 LCVAARKGEVRTMQRLIEAGAAINGK-DLHGWTALHRASFKGKIEVVRMLIDKGIDVDAK 423
+C A G++ ++ I A ++ + D TALH A G E+V L+ G+ V+ K
Sbjct: 10 ICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDK 69
Query: 424 DEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYAGISRILMHGG 483
D+ G++ LH A +G ++ + L+ KGA V A +P+ A + I+ +L+ GG
Sbjct: 70 DDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGG 129
Query: 484 ATKDG 488
A D
Sbjct: 130 ANPDA 134
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 62/149 (41%), Gaps = 2/149 (1%)
Query: 165 PADSADAQGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPXXXXXXXXXXXXXX 224
P + D G + LHIA + +IV+ LL G V + + GC TP
Sbjct: 65 PVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGC-TPLHYAASKNRHEIAV 123
Query: 225 XXXXRKASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEXX 284
A+ + + +H A G+L+++ +LL A+ N +GNT LHLA +
Sbjct: 124 MLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEE 183
Query: 285 XXXXXXXXXXNGARPDIRNARDGDTPLHI 313
GA I N ++ TPL +
Sbjct: 184 RVEEAKFLVTQGASIYIEN-KEEKTPLQV 211
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 48/93 (51%), Gaps = 3/93 (3%)
Query: 402 SFKGKIEVV--RMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSK 459
++ GK++ + R+L DK + D+D TALH A +GHT++ E L++ G V +
Sbjct: 14 AYSGKLDELKERILADKSL-ATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDA 72
Query: 460 NVSPMQIAECLHYAGISRILMHGGATKDGIQQT 492
SP+ IA I + L+ GA + + Q
Sbjct: 73 GWSPLHIAASAGXDEIVKALLVKGAHVNAVNQN 105
Score = 37.0 bits (84), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 51/114 (44%), Gaps = 1/114 (0%)
Query: 167 DSADAQGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPXXXXXXXXXXXXXXXX 226
++ + G T LH A ++ R +I +LLE G + +++ +T
Sbjct: 100 NAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYD-ATAMHRAAAKGNLKMVHIL 158
Query: 227 XXRKASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLA 280
KAST +T P+HLA +E K L+ +GA++ K+ T L +A
Sbjct: 159 LFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVA 212
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 76.6 bits (187), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 64/239 (26%), Positives = 106/239 (44%), Gaps = 55/239 (23%)
Query: 230 KASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEXXXXXXX 289
K+ R++ + +H A GH E+++ LL G VN D + A
Sbjct: 30 KSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVN----DKDDA------------- 72
Query: 290 XXXXXNGARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAE 349
G +PLHI AS G +++VK LL KGA+ N++G T AA
Sbjct: 73 -----------------GWSPLHIAASAGRDEIVKALLVKGAHVNAVNQNGCTPLHYAA- 114
Query: 350 CGHSRLFDALKLGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEV 409
+ + E+ M L+E GA + KD + TA+HRA+ KG +++
Sbjct: 115 ------------------SKNRHEIAVM--LLEGGANPDAKDHYDATAMHRAAAKGNLKM 154
Query: 410 VRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAE 468
V +L+ + +D +G T LH A + + + LV +GA + + +P+Q+A+
Sbjct: 155 VHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAK 213
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 64/125 (51%), Gaps = 1/125 (0%)
Query: 365 LCVAARKGEVRTMQRLIEAGAAINGK-DLHGWTALHRASFKGKIEVVRMLIDKGIDVDAK 423
+C A G++ ++ I A ++ + D TALH A G E+V L+ G+ V+ K
Sbjct: 10 ICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDK 69
Query: 424 DEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYAGISRILMHGG 483
D+ G++ LH A +G ++ + L+ KGA V A +P+ A + I+ +L+ GG
Sbjct: 70 DDAGWSPLHIAASAGRDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGG 129
Query: 484 ATKDG 488
A D
Sbjct: 130 ANPDA 134
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 63/149 (42%), Gaps = 2/149 (1%)
Query: 165 PADSADAQGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPXXXXXXXXXXXXXX 224
P + D G + LHIA + R +IV+ LL G V + + GC TP
Sbjct: 65 PVNDKDDAGWSPLHIAASAGRDEIVKALLVKGAHVNAVNQNGC-TPLHYAASKNRHEIAV 123
Query: 225 XXXXRKASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEXX 284
A+ + + +H A G+L+++ +LL A+ N +GNT LHLA +
Sbjct: 124 MLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEE 183
Query: 285 XXXXXXXXXXNGARPDIRNARDGDTPLHI 313
GA I N ++ TPL +
Sbjct: 184 RVEEAKFLVTQGASIYIEN-KEEKTPLQV 211
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 48/93 (51%), Gaps = 3/93 (3%)
Query: 402 SFKGKIEVV--RMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSK 459
++ GK++ + R+L DK + D+D TALH A +GHT++ E L++ G V +
Sbjct: 14 AYSGKLDELKERILADKSL-ATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDA 72
Query: 460 NVSPMQIAECLHYAGISRILMHGGATKDGIQQT 492
SP+ IA I + L+ GA + + Q
Sbjct: 73 GWSPLHIAASAGRDEIVKALLVKGAHVNAVNQN 105
Score = 37.4 bits (85), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 51/114 (44%), Gaps = 1/114 (0%)
Query: 167 DSADAQGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPXXXXXXXXXXXXXXXX 226
++ + G T LH A ++ R +I +LLE G + +++ +T
Sbjct: 100 NAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYD-ATAMHRAAAKGNLKMVHIL 158
Query: 227 XXRKASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLA 280
KAST +T P+HLA +E K L+ +GA++ K+ T L +A
Sbjct: 159 LFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVA 212
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 75.9 bits (185), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 60/227 (26%), Positives = 101/227 (44%), Gaps = 23/227 (10%)
Query: 242 GPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEXXXXXXXXXXXXNGARPDI 301
P+H A GH+++ +L+ GAN++ ++D T L A E GA D
Sbjct: 13 SPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDP 72
Query: 302 RNARDGDTPLHITASLGYEQMVKLLLQKGA-NKYIRNKSGKTAYDVAAECGHSRLFDALK 360
++A +G T LH+ A G+ ++V+ LL G + ++ G T A E H D +K
Sbjct: 73 KDA-EGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKH---VDLVK 128
Query: 361 LGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDV 420
L L+ G+ IN +D LH A+F G +++ +L+ D+
Sbjct: 129 L------------------LLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDL 170
Query: 421 DAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIA 467
A + G + LH A D L + + +DV + + +P+Q A
Sbjct: 171 HAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCA 217
Score = 58.9 bits (141), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 53/201 (26%), Positives = 84/201 (41%), Gaps = 40/201 (19%)
Query: 167 DSADAQGQTLLHIAIAQRRPDIVQLLLEFGP-DVESQGRCGCSTPXXXXXXXXXXXXXXX 225
D DA+G T LH+A + ++VQ LL G DV Q G
Sbjct: 71 DPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGG------------------- 111
Query: 226 XXXRKASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEXXX 285
W P+ A H++++KLLL KG+++N + N LH A
Sbjct: 112 ---------------WTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGC 156
Query: 286 XXXXXXXXXNGARPDIRNAR-DGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAY 344
A+ D+ GD+PLHI A V L L + ++ ++NK G+T
Sbjct: 157 VDIAEILL--AAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPL 214
Query: 345 DVAAECGHSRLFDALKLGDSL 365
A+ +S+++ AL++ +L
Sbjct: 215 QCASL--NSQVWSALQMSKAL 233
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 57/118 (48%), Gaps = 1/118 (0%)
Query: 368 AARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDG 427
AA G V L++AGA I+ T L A+ +E V+ LI G VD KD +G
Sbjct: 18 AAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEG 77
Query: 428 YTALHCAVESGHTDVTELLVKKGA-DVEARTSKNVSPMQIAECLHYAGISRILMHGGA 484
T LH A + GH +V + L+ G DV + +PM A + + ++L+ G+
Sbjct: 78 STCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGS 135
Score = 36.6 bits (83), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Query: 431 LHCAVESGHTDVTELLVKKGADVEARTSKNVSP-MQIAECLHYAGISRILMHGGATKD 487
LH A E+GH D+ +LV+ GA+++ + +P M+ AE H + + L+ GA D
Sbjct: 15 LHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAV-KYLIKAGALVD 71
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 59/93 (63%)
Query: 365 LCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKD 424
L AA+ G +++L+ GA +N + G T LH A+ G E+V++L+ KG DV+A+
Sbjct: 13 LHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARS 72
Query: 425 EDGYTALHCAVESGHTDVTELLVKKGADVEART 457
+DG T H A ++GH ++ +LL KGADV AR+
Sbjct: 73 KDGNTPEHLAKKNGHHEIVKLLDAKGADVNARS 105
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/102 (42%), Positives = 58/102 (56%), Gaps = 7/102 (6%)
Query: 241 WG------PIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEXXXXXXXXXXXX 294
WG P+H A + GH E +K LL KGA+VNA +KDGNT LHLA +
Sbjct: 4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLA 63
Query: 295 NGARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIR 336
GA + R ++DG+TP H+ G+ ++VKLL KGA+ R
Sbjct: 64 KGADVNAR-SKDGNTPEHLAKKNGHHEIVKLLDAKGADVNAR 104
Score = 68.9 bits (167), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 37/91 (40%), Positives = 56/91 (61%)
Query: 394 GWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADV 453
G T LH A+ G E V+ L+ KG DV+A+ +DG T LH A ++GH ++ +LL+ KGADV
Sbjct: 9 GNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADV 68
Query: 454 EARTSKNVSPMQIAECLHYAGISRILMHGGA 484
AR+ +P +A+ + I ++L GA
Sbjct: 69 NARSKDGNTPEHLAKKNGHHEIVKLLDAKGA 99
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 61/120 (50%), Gaps = 21/120 (17%)
Query: 304 ARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLGD 363
++DG+TPLH A G+ + VK LL KGA+ R+K G T +AA+ GH+ +
Sbjct: 6 SKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEI-------- 57
Query: 364 SLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAK 423
++ L+ GA +N + G T H A G E+V++L KG DV+A+
Sbjct: 58 -------------VKLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNAR 104
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 52/92 (56%), Gaps = 4/92 (4%)
Query: 270 TKDGNTALHLAVEXXXXXXXXXXXXNGARPDIRNARDGDTPLHITASLGYEQMVKLLLQK 329
+KDGNT LH A + GA + R ++DG+TPLH+ A G+ ++VKLLL K
Sbjct: 6 SKDGNTPLHNAAKNGHAEEVKKLLSKGADVNAR-SKDGNTPLHLAAKNGHAEIVKLLLAK 64
Query: 330 GANKYIRNKSGKTAYDVAAECGHS---RLFDA 358
GA+ R+K G T +A + GH +L DA
Sbjct: 65 GADVNARSKDGNTPEHLAKKNGHHEIVKLLDA 96
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 41/69 (59%), Gaps = 5/69 (7%)
Query: 425 EDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYAGISRILMHGGA 484
+DG T LH A ++GH + + L+ KGADV AR+ +P+ +A +A I ++L+ GA
Sbjct: 7 KDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGA 66
Query: 485 -----TKDG 488
+KDG
Sbjct: 67 DVNARSKDG 75
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 58/133 (43%), Gaps = 38/133 (28%)
Query: 136 GSPVLVLLVKDGEMDDLREVLERSDPAWNPADSADAQGQTLLHIAIAQRRPDIVQLLLEF 195
G+ L K+G ++++++L + A S D G T LH+A +IV+LLL
Sbjct: 9 GNTPLHNAAKNGHAEEVKKLLSKGADV--NARSKD--GNTPLHLAAKNGHAEIVKLLLAK 64
Query: 196 GPDVESQGRCGCSTPXXXXXXXXXXXXXXXXXXRKASTERSETSTWGPIHLALRGGHLEV 255
G DV ++ + G + P HLA + GH E+
Sbjct: 65 GADVNARSKDGNT----------------------------------PEHLAKKNGHHEI 90
Query: 256 LKLLLIKGANVNA 268
+KLL KGA+VNA
Sbjct: 91 VKLLDAKGADVNA 103
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 77/165 (46%), Gaps = 21/165 (12%)
Query: 304 ARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLGD 363
++DG +PLH+ A G ++ LLL+ GAN RN +A + GH F +K
Sbjct: 83 SQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGH---FQVVKC-- 137
Query: 364 SLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAK 423
L+++ A N KDL G T L A G E+V +L+ G ++A
Sbjct: 138 ----------------LLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINAS 181
Query: 424 DEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAE 468
+ G TALH AV H V ELL+ GA V+ + + + AE
Sbjct: 182 NNKGNTALHEAVIEKHVFVVELLLLHGASVQVLNKRQRTAVDCAE 226
Score = 65.1 bits (157), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 54/184 (29%), Positives = 81/184 (44%), Gaps = 24/184 (13%)
Query: 263 GANVNALTKDGNTALHLAVEXXXXXXXXXXXXNGARPDIRNARDGDTPLHITASLGYEQM 322
G VN ++DG++ LH+A +GA RNA D PLH+ G+ Q+
Sbjct: 76 GLGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNA-DQAVPLHLACQQGHFQV 134
Query: 323 VKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSLCVAARKGEVRTMQRLIE 382
VK LL A ++ SG T A GH L + L++
Sbjct: 135 VKCLLDSNAKPNKKDLSGNTPLIYACSGGHHEL---------------------VALLLQ 173
Query: 383 AGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDV 442
GA+IN + G TALH A + + VV +L+ G V ++ TA+ CA ++ + +
Sbjct: 174 HGASINASNNKGNTALHEAVIEKHVFVVELLLLHGASVQVLNKRQRTAVDCAEQN--SKI 231
Query: 443 TELL 446
ELL
Sbjct: 232 MELL 235
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 51/102 (50%), Gaps = 1/102 (0%)
Query: 242 GPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEXXXXXXXXXXXXNGARPDI 301
P+H+A G +++ LLL GAN A D LHLA + + A+P+
Sbjct: 88 SPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNK 147
Query: 302 RNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTA 343
++ G+TPL S G+ ++V LLLQ GA+ N G TA
Sbjct: 148 KDL-SGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTA 188
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/197 (26%), Positives = 83/197 (42%), Gaps = 38/197 (19%)
Query: 173 GQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPXXXXXXXXXXXXXXXXXXRKAS 232
G + LH+A R D++ LLL+ G + ++ + P A
Sbjct: 86 GSSPLHVAALHGRADLIPLLLKHGANAGARNA-DQAVPLHLACQQGHFQVVKCLLDSNAK 144
Query: 233 TERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEXXXXXXXXXX 292
+ + S P+ A GGH E++ LLL GA++NA GNTALH AV
Sbjct: 145 PNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAV----------- 193
Query: 293 XXNGARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGH 352
H+ +V+LLL GA+ + NK +TA D A + +
Sbjct: 194 ----------------IEKHVF-------VVELLLLHGASVQVLNKRQRTAVDCAEQ--N 228
Query: 353 SRLFDALKLGDSLCVAA 369
S++ + L++ S CVA+
Sbjct: 229 SKIMELLQVVPS-CVAS 244
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 62/132 (46%), Gaps = 3/132 (2%)
Query: 365 LCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKD 424
L VAA G + L++ GA ++ LH A +G +VV+ L+D + KD
Sbjct: 90 LHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKD 149
Query: 425 EDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYAGISRILMHGGA 484
G T L A GH ++ LL++ GA + A +K + + A + + +L+ GA
Sbjct: 150 LSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLLLHGA 209
Query: 485 TKDGIQQTNLRQ 496
+ +Q N RQ
Sbjct: 210 S---VQVLNKRQ 218
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 54/112 (48%), Gaps = 3/112 (2%)
Query: 375 RTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCA 434
+ + ++ +G +N G + LH A+ G+ +++ +L+ G + A++ D LH A
Sbjct: 67 KRLAKVPASGLGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLA 126
Query: 435 VESGHTDVTELLVKKGADVEARTSKNVSPMQIAECL--HYAGISRILMHGGA 484
+ GH V + L+ A + +P+ I C H+ ++ +L HG +
Sbjct: 127 CQQGHFQVVKCLLDSNAKPNKKDLSGNTPL-IYACSGGHHELVALLLQHGAS 177
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 73.2 bits (178), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 41/96 (42%), Positives = 57/96 (59%)
Query: 361 LGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDV 420
LG L AAR G+ ++ L+ GA +N D G T LH A+ +E+V +L+ G DV
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADV 73
Query: 421 DAKDEDGYTALHCAVESGHTDVTELLVKKGADVEAR 456
+A D DG T LH A GH ++ E+L+K GADV A+
Sbjct: 74 NAHDNDGSTPLHLAALFGHLEIVEVLLKHGADVNAQ 109
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 68/114 (59%), Gaps = 1/114 (0%)
Query: 247 ALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEXXXXXXXXXXXXNGARPDIRNARD 306
A R G + +++L+ GA+VNA + GNT LHLA + +GA + + D
Sbjct: 21 AARAGQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHD-ND 79
Query: 307 GDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALK 360
G TPLH+ A G+ ++V++LL+ GA+ ++K GKTA+D++ + G+ L + L+
Sbjct: 80 GSTPLHLAALFGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 133
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 68/135 (50%), Gaps = 21/135 (15%)
Query: 314 TASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSLCVAARKGE 373
A G + V++L+ GA+ ++ G T +AA+ H
Sbjct: 21 AARAGQDDEVRILMANGADVNANDRKGNTPLHLAADYDH--------------------- 59
Query: 374 VRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHC 433
+ ++ L++ GA +N D G T LH A+ G +E+V +L+ G DV+A+D+ G TA
Sbjct: 60 LEIVEVLLKHGADVNAHDNDGSTPLHLAALFGHLEIVEVLLKHGADVNAQDKFGKTAFDI 119
Query: 434 AVESGHTDVTELLVK 448
++++G+ D+ E+L K
Sbjct: 120 SIDNGNEDLAEILQK 134
Score = 58.9 bits (141), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 57/107 (53%), Gaps = 4/107 (3%)
Query: 400 RASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSK 459
A+ G+ + VR+L+ G DV+A D G T LH A + H ++ E+L+K GADV A +
Sbjct: 20 EAARAGQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHDND 79
Query: 460 NVSPMQIAECLHYAGISRILMHGGA---TKDGIQQTNLRQVSIQFGN 503
+P+ +A + I +L+ GA +D +T +SI GN
Sbjct: 80 GSTPLHLAALFGHLEIVEVLLKHGADVNAQDKFGKTAF-DISIDNGN 125
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 55/121 (45%), Gaps = 36/121 (29%)
Query: 164 NPAD--SADAQGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPXXXXXXXXXXX 221
N AD + D +G T LH+A +IV++LL+ G DV + G +
Sbjct: 36 NGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHDNDGST------------- 82
Query: 222 XXXXXXXRKASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAV 281
P+HLA GHLE++++LL GA+VNA K G TA +++
Sbjct: 83 ---------------------PLHLAALFGHLEIVEVLLKHGADVNAQDKFGKTAFDISI 121
Query: 282 E 282
+
Sbjct: 122 D 122
>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex
pdb|1NFI|F Chain F, I-Kappa-B-AlphaNF-Kappa-B Complex
Length = 213
Score = 72.4 bits (176), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 60/203 (29%), Positives = 95/203 (46%), Gaps = 21/203 (10%)
Query: 269 LTKDGNTALHLAV--EXXXXXXXXXXXXNG--ARPDIRNARDGDTPLHITASLGYEQMVK 324
LT+DG++ LHLA+ E G A + +N TPLH+ ++ +
Sbjct: 1 LTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQ-QTPLHLAVITNQPEIAE 59
Query: 325 LLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSLCVAARKGEVRTMQRLIEAG 384
LL G + +R+ G T +A E G C+A+ G +
Sbjct: 60 ALLGAGCDPELRDFRGNTPLHLACEQG--------------CLAS-VGVLTQSCTTPHLH 104
Query: 385 AAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDE-DGYTALHCAVESGHTDVT 443
+ + + +G T LH AS G + +V +L+ G DV+A++ +G TALH AV+ + D+
Sbjct: 105 SILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLV 164
Query: 444 ELLVKKGADVEARTSKNVSPMQI 466
LL+K GADV T + SP Q+
Sbjct: 165 SLLLKCGADVNRVTYQGYSPYQL 187
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 52/113 (46%), Gaps = 6/113 (5%)
Query: 243 PIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEXXXXXXXXXXXXNGARPDIR 302
P+HLA+ E+ + LL G + GNT LHLA E + P +
Sbjct: 45 PLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLH 104
Query: 303 NA-----RDGDTPLHITASLGYEQMVKLLLQKGANKYIRNK-SGKTAYDVAAE 349
+ +G T LH+ + GY +V+LL+ GA+ + +G+TA +A +
Sbjct: 105 SILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVD 157
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 171 AQGQTLLHIAIAQRRPDIVQLLLEFGPDV 199
G+T LH+A+ + PD+V LLL+ G DV
Sbjct: 146 CNGRTALHLAVDLQNPDLVSLLLKCGADV 174
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
Query: 407 IEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQI 466
+EV+R + ++ ++ T LH AV + ++ E L+ G D E R + +P+ +
Sbjct: 22 MEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHL 81
Query: 467 A---ECLHYAGI 475
A CL G+
Sbjct: 82 ACEQGCLASVGV 93
Score = 28.9 bits (63), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 43/112 (38%), Gaps = 33/112 (29%)
Query: 168 SADAQGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPXXXXXXXXXXXXXXXXX 227
+ + G T LH+A IV+LL+ G DV +Q C T
Sbjct: 109 ATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRT------------------ 150
Query: 228 XRKASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHL 279
+HLA+ + +++ LLL GA+VN +T G + L
Sbjct: 151 ---------------ALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQL 187
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 72.4 bits (176), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 61/107 (57%)
Query: 361 LGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDV 420
LG L AAR G+ ++ L+ GA +N D G T LH A+ G +E+V +L+ G DV
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADV 73
Query: 421 DAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIA 467
+A+D G T LH A GH ++ E+L+K GADV A+ + I+
Sbjct: 74 NAEDNFGITPLHLAAIRGHLEIVEVLLKHGADVNAQDKFGKTAFDIS 120
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 43/116 (37%), Positives = 68/116 (58%), Gaps = 5/116 (4%)
Query: 247 ALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEXXXXXXXXXXXXNGARPDIRNARD 306
A R G + +++L+ GA+VNAL +DG T LHLA + GA NA D
Sbjct: 21 AARAGQDDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADV---NAED 77
Query: 307 --GDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALK 360
G TPLH+ A G+ ++V++LL+ GA+ ++K GKTA+D++ + G+ L + L+
Sbjct: 78 NFGITPLHLAAIRGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 133
Score = 65.5 bits (158), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 62/109 (56%), Gaps = 4/109 (3%)
Query: 398 LHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEART 457
L A+ G+ + VR+L+ G DV+A DEDG T LH A + GH ++ E+L+K GADV A
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAED 77
Query: 458 SKNVSPMQIAECLHYAGISRILMHGGA---TKDGIQQTNLRQVSIQFGN 503
+ ++P+ +A + I +L+ GA +D +T +SI GN
Sbjct: 78 NFGITPLHLAAIRGHLEIVEVLLKHGADVNAQDKFGKTAF-DISIDNGN 125
Score = 65.5 bits (158), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 71/135 (52%), Gaps = 21/135 (15%)
Query: 314 TASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSLCVAARKGE 373
A G + V++L+ GA+ ++ G T +AA+ GH
Sbjct: 21 AARAGQDDEVRILMANGADVNALDEDGLTPLHLAAQLGH--------------------- 59
Query: 374 VRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHC 433
+ ++ L++ GA +N +D G T LH A+ +G +E+V +L+ G DV+A+D+ G TA
Sbjct: 60 LEIVEVLLKYGADVNAEDNFGITPLHLAAIRGHLEIVEVLLKHGADVNAQDKFGKTAFDI 119
Query: 434 AVESGHTDVTELLVK 448
++++G+ D+ E+L K
Sbjct: 120 SIDNGNEDLAEILQK 134
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 56/121 (46%), Gaps = 36/121 (29%)
Query: 164 NPAD--SADAQGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPXXXXXXXXXXX 221
N AD + D G T LH+A +IV++LL++G DV ++ G +
Sbjct: 36 NGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAEDNFGIT------------- 82
Query: 222 XXXXXXXRKASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAV 281
P+HLA GHLE++++LL GA+VNA K G TA +++
Sbjct: 83 ---------------------PLHLAAIRGHLEIVEVLLKHGADVNAQDKFGKTAFDISI 121
Query: 282 E 282
+
Sbjct: 122 D 122
>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex
Length = 236
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 60/204 (29%), Positives = 95/204 (46%), Gaps = 21/204 (10%)
Query: 269 LTKDGNTALHLAV--EXXXXXXXXXXXXNG--ARPDIRNARDGDTPLHITASLGYEQMVK 324
LT+DG++ LHLA+ E G A + +N TPLH+ ++ +
Sbjct: 4 LTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQ-QTPLHLAVITNQPEIAE 62
Query: 325 LLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSLCVAARKGEVRTMQRLIEAG 384
LL G + +R+ G T +A E G C+A+ G +
Sbjct: 63 ALLGAGCDPELRDFRGNTPLHLACEQG--------------CLAS-VGVLTQSCTTPHLH 107
Query: 385 AAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDE-DGYTALHCAVESGHTDVT 443
+ + + +G T LH AS G + +V +L+ G DV+A++ +G TALH AV+ + D+
Sbjct: 108 SILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLV 167
Query: 444 ELLVKKGADVEARTSKNVSPMQIA 467
LL+K GADV T + SP Q+
Sbjct: 168 SLLLKCGADVNRVTYQGYSPYQLT 191
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 52/113 (46%), Gaps = 6/113 (5%)
Query: 243 PIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEXXXXXXXXXXXXNGARPDIR 302
P+HLA+ E+ + LL G + GNT LHLA E + P +
Sbjct: 48 PLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLH 107
Query: 303 NA-----RDGDTPLHITASLGYEQMVKLLLQKGANKYIRNK-SGKTAYDVAAE 349
+ +G T LH+ + GY +V+LL+ GA+ + +G+TA +A +
Sbjct: 108 SILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVD 160
Score = 32.0 bits (71), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 171 AQGQTLLHIAIAQRRPDIVQLLLEFGPDV 199
G+T LH+A+ + PD+V LLL+ G DV
Sbjct: 149 CNGRTALHLAVDLQNPDLVSLLLKCGADV 177
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 43/113 (38%), Gaps = 33/113 (29%)
Query: 168 SADAQGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPXXXXXXXXXXXXXXXXX 227
+ + G T LH+A IV+LL+ G DV +Q C T
Sbjct: 112 ATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRT------------------ 153
Query: 228 XRKASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLA 280
+HLA+ + +++ LLL GA+VN +T G + L
Sbjct: 154 ---------------ALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLT 191
Score = 28.9 bits (63), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
Query: 407 IEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQI 466
+EV+R + ++ ++ T LH AV + ++ E L+ G D E R + +P+ +
Sbjct: 25 MEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHL 84
Query: 467 A---ECLHYAGI 475
A CL G+
Sbjct: 85 ACEQGCLASVGV 96
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 39/96 (40%), Positives = 56/96 (58%)
Query: 361 LGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDV 420
LG L AAR G+ ++ L+ GA +N +D G T LH A+ +E+V +L+ G DV
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADV 73
Query: 421 DAKDEDGYTALHCAVESGHTDVTELLVKKGADVEAR 456
+A D G T LH GH ++ E+L+K GADV A+
Sbjct: 74 NAIDAIGETPLHLVAMYGHLEIVEVLLKHGADVNAQ 109
Score = 65.9 bits (159), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 41/114 (35%), Positives = 67/114 (58%), Gaps = 1/114 (0%)
Query: 247 ALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEXXXXXXXXXXXXNGARPDIRNARD 306
A R G + +++L+ GA+VNA K G T LHLA NGA + +A
Sbjct: 21 AARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAIDAI- 79
Query: 307 GDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALK 360
G+TPLH+ A G+ ++V++LL+ GA+ ++K GKTA+D++ + G+ L + L+
Sbjct: 80 GETPLHLVAMYGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 133
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 66/135 (48%), Gaps = 21/135 (15%)
Query: 314 TASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSLCVAARKGE 373
A G + V++L+ GA+ +K G T +AA H
Sbjct: 21 AARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDH--------------------- 59
Query: 374 VRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHC 433
+ ++ L++ GA +N D G T LH + G +E+V +L+ G DV+A+D+ G TA
Sbjct: 60 LEIVEVLLKNGADVNAIDAIGETPLHLVAMYGHLEIVEVLLKHGADVNAQDKFGKTAFDI 119
Query: 434 AVESGHTDVTELLVK 448
++++G+ D+ E+L K
Sbjct: 120 SIDNGNEDLAEILQK 134
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 59/109 (54%), Gaps = 4/109 (3%)
Query: 398 LHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEART 457
L A+ G+ + VR+L+ G DV+A+D+ G T LH A + H ++ E+L+K GADV A
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAID 77
Query: 458 SKNVSPMQIAECLHYAGISRILMHGGA---TKDGIQQTNLRQVSIQFGN 503
+ +P+ + + I +L+ GA +D +T +SI GN
Sbjct: 78 AIGETPLHLVAMYGHLEIVEVLLKHGADVNAQDKFGKTAF-DISIDNGN 125
Score = 33.5 bits (75), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 32/58 (55%)
Query: 149 MDDLREVLERSDPAWNPADSADAQGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCG 206
M+D E++E ++ DA G+T LH+ +IV++LL+ G DV +Q + G
Sbjct: 56 MNDHLEIVEVLLKNGADVNAIDAIGETPLHLVAMYGHLEIVEVLLKHGADVNAQDKFG 113
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 39/96 (40%), Positives = 55/96 (57%)
Query: 361 LGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDV 420
LG L AAR G+ ++ L GA +N D G T LH A+ G +E+V +L+ G DV
Sbjct: 14 LGKKLLEAARAGQDDEVRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADV 73
Query: 421 DAKDEDGYTALHCAVESGHTDVTELLVKKGADVEAR 456
+A G T LH A + H ++ E+L+K GADV A+
Sbjct: 74 NATGNTGRTPLHLAAWADHLEIVEVLLKHGADVNAQ 109
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 58/109 (53%), Gaps = 4/109 (3%)
Query: 398 LHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEART 457
L A+ G+ + VR+L G DV+A D G+T LH A GH ++ E+L+K GADV A
Sbjct: 18 LLEAARAGQDDEVRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATG 77
Query: 458 SKNVSPMQIAECLHYAGISRILMHGGA---TKDGIQQTNLRQVSIQFGN 503
+ +P+ +A + I +L+ GA +D +T +SI GN
Sbjct: 78 NTGRTPLHLAAWADHLEIVEVLLKHGADVNAQDKFGKTAF-DISIDNGN 125
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 63/122 (51%), Gaps = 36/122 (29%)
Query: 241 WG--PIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEXXXXXXXXXXXXNGAR 298
WG P+HLA GHLE++++LL GA+VNA GNT
Sbjct: 46 WGHTPLHLAAMLGHLEIVEVLLKNGADVNAT---GNT----------------------- 79
Query: 299 PDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDA 358
G TPLH+ A + ++V++LL+ GA+ ++K GKTA+D++ + G+ L +
Sbjct: 80 --------GRTPLHLAAWADHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEI 131
Query: 359 LK 360
L+
Sbjct: 132 LQ 133
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 52/84 (61%)
Query: 365 LCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKD 424
L +AA G + ++ L++ GA +N G T LH A++ +E+V +L+ G DV+A+D
Sbjct: 51 LHLAAMLGHLEIVEVLLKNGADVNATGNTGRTPLHLAAWADHLEIVEVLLKHGADVNAQD 110
Query: 425 EDGYTALHCAVESGHTDVTELLVK 448
+ G TA ++++G+ D+ E+L K
Sbjct: 111 KFGKTAFDISIDNGNEDLAEILQK 134
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 54/121 (44%), Gaps = 36/121 (29%)
Query: 164 NPAD--SADAQGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPXXXXXXXXXXX 221
N AD + D G T LH+A +IV++LL+ G DV + G G +
Sbjct: 36 NGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATGNTGRT------------- 82
Query: 222 XXXXXXXRKASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAV 281
P+HLA HLE++++LL GA+VNA K G TA +++
Sbjct: 83 ---------------------PLHLAAWADHLEIVEVLLKHGADVNAQDKFGKTAFDISI 121
Query: 282 E 282
+
Sbjct: 122 D 122
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 68.9 bits (167), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 39/96 (40%), Positives = 57/96 (59%)
Query: 361 LGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDV 420
LG L A R G+ ++ L+ GA +N D G T LH A+ +G +E+V +L+ G DV
Sbjct: 14 LGKKLLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADV 73
Query: 421 DAKDEDGYTALHCAVESGHTDVTELLVKKGADVEAR 456
+A D G T LH A GH ++ E+L++ GADV A+
Sbjct: 74 NASDSWGRTPLHLAATVGHLEIVEVLLEYGADVNAQ 109
Score = 66.2 bits (160), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 42/116 (36%), Positives = 71/116 (61%), Gaps = 5/116 (4%)
Query: 247 ALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEXXXXXXXXXXXXNGARPDIRNARD 306
A R G + +++L+ GA+VNA+ G T LHLA + +GA D+ NA D
Sbjct: 21 ATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGA--DV-NASD 77
Query: 307 --GDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALK 360
G TPLH+ A++G+ ++V++LL+ GA+ ++K GKTA+D++ + G+ L + L+
Sbjct: 78 SWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 133
Score = 62.4 bits (150), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 56/84 (66%)
Query: 365 LCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKD 424
L +AA++G + ++ L++ GA +N D G T LH A+ G +E+V +L++ G DV+A+D
Sbjct: 51 LHLAAKRGHLEIVEVLLKHGADVNASDSWGRTPLHLAATVGHLEIVEVLLEYGADVNAQD 110
Query: 425 EDGYTALHCAVESGHTDVTELLVK 448
+ G TA ++++G+ D+ E+L K
Sbjct: 111 KFGKTAFDISIDNGNEDLAEILQK 134
Score = 62.0 bits (149), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 61/109 (55%), Gaps = 4/109 (3%)
Query: 398 LHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEART 457
L A+ G+ + VR+L+ G DV+A D+ G T LH A + GH ++ E+L+K GADV A
Sbjct: 18 LLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASD 77
Query: 458 SKNVSPMQIAECLHYAGISRILMHGGA---TKDGIQQTNLRQVSIQFGN 503
S +P+ +A + + I +L+ GA +D +T +SI GN
Sbjct: 78 SWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAF-DISIDNGN 125
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 57/123 (46%), Gaps = 40/123 (32%)
Query: 164 NPAD--SADAQGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPXXXXXXXXXXX 221
N AD + D G T LH+A + +IV++LL+ G DV +
Sbjct: 36 NGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNA-------------------- 75
Query: 222 XXXXXXXRKASTERSETSTWG--PIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHL 279
+ +WG P+HLA GHLE++++LL GA+VNA K G TA +
Sbjct: 76 ----------------SDSWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDI 119
Query: 280 AVE 282
+++
Sbjct: 120 SID 122
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 68.6 bits (166), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 43/116 (37%), Positives = 72/116 (62%), Gaps = 5/116 (4%)
Query: 247 ALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEXXXXXXXXXXXXNGARPDIRNARD 306
A R G + +++L+ GA+VNA+ G T LHLA + +GA D+ NARD
Sbjct: 21 ATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGA--DV-NARD 77
Query: 307 --GDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALK 360
G TPLH+ A++G+ ++V++LL+ GA+ ++K GKTA+D++ + G+ L + L+
Sbjct: 78 IWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 133
Score = 68.6 bits (166), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 40/107 (37%), Positives = 61/107 (57%)
Query: 361 LGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDV 420
LG L A R G+ ++ L+ GA +N D G T LH A+ +G +E+V +L+ G DV
Sbjct: 14 LGKKLLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADV 73
Query: 421 DAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIA 467
+A+D G T LH A GH ++ E+L++ GADV A+ + I+
Sbjct: 74 NARDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDIS 120
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 58/84 (69%)
Query: 365 LCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKD 424
L +AA++G + ++ L++ GA +N +D+ G T LH A+ G +E+V +L++ G DV+A+D
Sbjct: 51 LHLAAKRGHLEIVEVLLKHGADVNARDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQD 110
Query: 425 EDGYTALHCAVESGHTDVTELLVK 448
+ G TA ++++G+ D+ E+L K
Sbjct: 111 KFGKTAFDISIDNGNEDLAEILQK 134
Score = 62.0 bits (149), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 61/109 (55%), Gaps = 4/109 (3%)
Query: 398 LHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEART 457
L A+ G+ + VR+L+ G DV+A D+ G T LH A + GH ++ E+L+K GADV AR
Sbjct: 18 LLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARD 77
Query: 458 SKNVSPMQIAECLHYAGISRILMHGGA---TKDGIQQTNLRQVSIQFGN 503
+P+ +A + + I +L+ GA +D +T +SI GN
Sbjct: 78 IWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAF-DISIDNGN 125
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 56/123 (45%), Gaps = 40/123 (32%)
Query: 164 NPAD--SADAQGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPXXXXXXXXXXX 221
N AD + D G T LH+A + +IV++LL+ G DV ++
Sbjct: 36 NGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNAR------------------- 76
Query: 222 XXXXXXXRKASTERSETSTWG--PIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHL 279
WG P+HLA GHLE++++LL GA+VNA K G TA +
Sbjct: 77 -----------------DIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDI 119
Query: 280 AVE 282
+++
Sbjct: 120 SID 122
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/96 (40%), Positives = 57/96 (59%)
Query: 361 LGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDV 420
LG L A R G+ ++ L+ GA +N D G T LH A+ +G +E+V +L+ G DV
Sbjct: 14 LGKKLLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADV 73
Query: 421 DAKDEDGYTALHCAVESGHTDVTELLVKKGADVEAR 456
+A D G T LH A GH ++ E+L++ GADV A+
Sbjct: 74 NASDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQ 109
Score = 66.2 bits (160), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 42/116 (36%), Positives = 71/116 (61%), Gaps = 5/116 (4%)
Query: 247 ALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEXXXXXXXXXXXXNGARPDIRNARD 306
A R G + +++L+ GA+VNA+ G T LHLA + +GA D+ NA D
Sbjct: 21 ATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGA--DV-NASD 77
Query: 307 --GDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALK 360
G TPLH+ A++G+ ++V++LL+ GA+ ++K GKTA+D++ + G+ L + L+
Sbjct: 78 IWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 133
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 57/84 (67%)
Query: 365 LCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKD 424
L +AA++G + ++ L++ GA +N D+ G T LH A+ G +E+V +L++ G DV+A+D
Sbjct: 51 LHLAAKRGHLEIVEVLLKHGADVNASDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQD 110
Query: 425 EDGYTALHCAVESGHTDVTELLVK 448
+ G TA ++++G+ D+ E+L K
Sbjct: 111 KFGKTAFDISIDNGNEDLAEILQK 134
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 60/109 (55%), Gaps = 4/109 (3%)
Query: 398 LHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEART 457
L A+ G+ + VR+L+ G DV+A D+ G T LH A + GH ++ E+L+K GADV A
Sbjct: 18 LLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASD 77
Query: 458 SKNVSPMQIAECLHYAGISRILMHGGA---TKDGIQQTNLRQVSIQFGN 503
+P+ +A + + I +L+ GA +D +T +SI GN
Sbjct: 78 IWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAF-DISIDNGN 125
Score = 35.4 bits (80), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 27/40 (67%)
Query: 167 DSADAQGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCG 206
+++D G+T LH+A +IV++LLE+G DV +Q + G
Sbjct: 74 NASDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFG 113
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 91
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 57/88 (64%)
Query: 361 LGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDV 420
LG L AAR G+ ++ L+ GA +N KD G+T LH A+ +G +E+V +L+ G DV
Sbjct: 2 LGKKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADV 61
Query: 421 DAKDEDGYTALHCAVESGHTDVTELLVK 448
+A+D+ G TA ++++G+ D+ E+L K
Sbjct: 62 NAQDKFGKTAFDISIDNGNEDLAEILQK 89
Score = 58.9 bits (141), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 29/59 (49%), Positives = 41/59 (69%)
Query: 398 LHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEAR 456
L A+ G+ + VR+L+ G DV+AKD+DGYT LH A GH ++ E+L+K GADV A+
Sbjct: 6 LLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQ 64
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 46/66 (69%), Gaps = 1/66 (1%)
Query: 295 NGARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSR 354
NGA + ++ +DG TPLH+ A G+ ++V++LL+ GA+ ++K GKTA+D++ + G+
Sbjct: 24 NGADVNAKD-KDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTAFDISIDNGNED 82
Query: 355 LFDALK 360
L + L+
Sbjct: 83 LAEILQ 88
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 33/52 (63%)
Query: 231 ASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVE 282
A + + P+HLA R GHLE++++LL GA+VNA K G TA ++++
Sbjct: 26 ADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTAFDISID 77
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 45/100 (45%), Gaps = 21/100 (21%)
Query: 314 TASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSLCVAARKGE 373
A G + V++L+ GA+ ++K G T L +AAR+G
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDGYT---------------------PLHLAAREGH 47
Query: 374 VRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRML 413
+ ++ L++AGA +N +D G TA + G ++ +L
Sbjct: 48 LEIVEVLLKAGADVNAQDKFGKTAFDISIDNGNEDLAEIL 87
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 164 NPAD--SADAQGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCG 206
N AD + D G T LH+A + +IV++LL+ G DV +Q + G
Sbjct: 24 NGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFG 68
>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9
(Hasb9-2), An Ankyrin Repeat Protein
Length = 285
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 65/230 (28%), Positives = 101/230 (43%), Gaps = 26/230 (11%)
Query: 238 TSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEXXXXXXXXXXXXNGA 297
S W P+H A GH L+ L+ +G VN +T D + LH A +GA
Sbjct: 57 VSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGA 116
Query: 298 RPDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFD 357
+ + A D TPL G V LLLQ GA+ ++ +S
Sbjct: 117 QVNGVTA-DWHTPLFNACVSGSWDCVNLLLQHGAS--VQPES------------------ 155
Query: 358 ALKLGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKG 417
L + AAR+G V + LI G I+ K H T L+ A + V+ L++ G
Sbjct: 156 --DLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESG 213
Query: 418 IDVD-AKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQI 466
DV+ K +D + LH V + ++ LL+ GAD +A+ ++ P+++
Sbjct: 214 ADVNQGKGQD--SPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVEL 261
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 59/129 (45%), Gaps = 3/129 (2%)
Query: 229 RKASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEXXXXXX 288
+ ++ + E+ PIH A R GH+E + L+ G N++ T L+LA E
Sbjct: 146 QHGASVQPESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRAC 205
Query: 289 XXXXXXNGARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYD-VA 347
+GA D+ + D+PLH E++ LL+ GA+ +N GK + V
Sbjct: 206 VKKLLESGA--DVNQGKGQDSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVELVP 263
Query: 348 AECGHSRLF 356
E ++LF
Sbjct: 264 PESPLAQLF 272
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 53/116 (45%)
Query: 368 AARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDG 427
AA G +++ LI G A+N + LH A G + V++L+ G V+ D
Sbjct: 66 AAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADW 125
Query: 428 YTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYAGISRILMHGG 483
+T L A SG D LL++ GA V+ + + A H ++ ++ +GG
Sbjct: 126 HTPLFNACVSGSWDCVNLLLQHGASVQPESDLASPIHEAARRGHVECVNSLIAYGG 181
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 46/94 (48%), Gaps = 3/94 (3%)
Query: 395 WTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVE 454
W+ +H A+ G +R LI +G V+ D + LH A GH ++L+K GA V
Sbjct: 60 WSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVN 119
Query: 455 ARTSKNVSPMQIAECL--HYAGISRILMHGGATK 486
T+ +P+ C+ + ++ +L HG + +
Sbjct: 120 GVTADWHTPL-FNACVSGSWDCVNLLLQHGASVQ 152
>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
pdb|3ZKJ|D Chain D, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
Length = 261
Score = 65.9 bits (159), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 62/229 (27%), Positives = 97/229 (42%), Gaps = 26/229 (11%)
Query: 239 STWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEXXXXXXXXXXXXNGAR 298
S W P+H A GH L+ L+ +G VN +T D + LH A +GA+
Sbjct: 2 SDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQ 61
Query: 299 PDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDA 358
+ A D TPL G V LLLQ GA+ + ++
Sbjct: 62 VNGVTA-DWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLASPIHE------------- 107
Query: 359 LKLGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGI 418
AAR+G V + LI G I+ K H T L+ A + V+ L++ G
Sbjct: 108 ---------AARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGA 158
Query: 419 DVD-AKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQI 466
DV+ K +D + LH + ++ LL+ GAD +A+ ++ P+++
Sbjct: 159 DVNQGKGQD--SPLHAVARTASEELACLLMDFGADTQAKNAEGKRPVEL 205
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 53/113 (46%), Gaps = 2/113 (1%)
Query: 229 RKASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEXXXXXX 288
+ ++ + E+ PIH A R GH+E + L+ G N++ T L+LA E
Sbjct: 90 QHGASVQPESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRAC 149
Query: 289 XXXXXXNGARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGK 341
+GA D+ + D+PLH A E++ LL+ GA+ +N GK
Sbjct: 150 VKKLLESGA--DVNQGKGQDSPLHAVARTASEELACLLMDFGADTQAKNAEGK 200
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 53/116 (45%)
Query: 368 AARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDG 427
AA G +++ LI G A+N + LH A G + V++L+ G V+ D
Sbjct: 10 AAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADW 69
Query: 428 YTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYAGISRILMHGG 483
+T L A SG D LL++ GA V+ + + A H ++ ++ +GG
Sbjct: 70 HTPLFNACVSGSWDCVNLLLQHGASVQPESDLASPIHEAARRGHVECVNSLIAYGG 125
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 46/94 (48%), Gaps = 3/94 (3%)
Query: 395 WTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVE 454
W+ +H A+ G +R LI +G V+ D + LH A GH ++L+K GA V
Sbjct: 4 WSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVN 63
Query: 455 ARTSKNVSPMQIAECL--HYAGISRILMHGGATK 486
T+ +P+ C+ + ++ +L HG + +
Sbjct: 64 GVTADWHTPL-FNACVSGSWDCVNLLLQHGASVQ 96
>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWS|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWT|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWV|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWW|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWW|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWX|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
pdb|3TWX|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
Length = 165
Score = 65.5 bits (158), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 64/122 (52%), Gaps = 3/122 (2%)
Query: 365 LCVAARKGEVRTMQRLIEAGAAINGKDLHG--WTALHRASFKGKIEVVRMLIDKGIDVDA 422
L AA+ G+V T+++L ++N +D+ G T LH A+ ++ VV L+ G DV A
Sbjct: 12 LLEAAKAGDVETVKKLCTV-QSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHA 70
Query: 423 KDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYAGISRILMHG 482
KD+ G LH A GH +V ELLVK GA V +P+ A I ++L+
Sbjct: 71 KDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQH 130
Query: 483 GA 484
GA
Sbjct: 131 GA 132
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 65/138 (47%), Gaps = 22/138 (15%)
Query: 309 TPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSLCVA 368
TPLH A +V+ LLQ GA+ + ++K G A GH +
Sbjct: 44 TPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEV------------- 90
Query: 369 ARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGY 428
+ L++ GA +N DL +T LH A+ KGK E+ ++L+ G D K+ DG
Sbjct: 91 --------AELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGN 142
Query: 429 TALHCAVESGHTDVTELL 446
T L V+ G TD+ +LL
Sbjct: 143 TPLDL-VKDGDTDIQDLL 159
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 50/102 (49%)
Query: 365 LCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKD 424
L AA V ++ L++ GA ++ KD G LH A G EV +L+ G V+ D
Sbjct: 46 LHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVAD 105
Query: 425 EDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQI 466
+T LH A G ++ +LL++ GAD + +P+ +
Sbjct: 106 LWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDL 147
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 61/122 (50%), Gaps = 3/122 (2%)
Query: 243 PIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEXXXXXXXXXXXXNGARPDIR 302
P+H A + V++ LL GA+V+A K G LH A +GA ++
Sbjct: 45 PLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVA 104
Query: 303 NARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLG 362
+ TPLH A+ G ++ KLLLQ GA+ +N+ G T D+ + G + + D L+ G
Sbjct: 105 DLWKF-TPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKD-GDTDIQDLLR-G 161
Query: 363 DS 364
D+
Sbjct: 162 DA 163
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 44/105 (41%), Gaps = 1/105 (0%)
Query: 175 TLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPXXXXXXXXXXXXXXXXXXRKASTE 234
T LH A R +V+ LL+ G DV ++ + G P A
Sbjct: 44 TPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGL-VPLHNACSYGHYEVAELLVKHGAVVN 102
Query: 235 RSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHL 279
++ + P+H A G E+ KLLL GA+ +DGNT L L
Sbjct: 103 VADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDL 147
>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1
Length = 167
Score = 65.5 bits (158), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 64/122 (52%), Gaps = 3/122 (2%)
Query: 365 LCVAARKGEVRTMQRLIEAGAAINGKDLHG--WTALHRASFKGKIEVVRMLIDKGIDVDA 422
L AA+ G+V T+++L ++N +D+ G T LH A+ ++ VV L+ G DV A
Sbjct: 14 LLEAAKAGDVETVKKLCTV-QSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHA 72
Query: 423 KDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYAGISRILMHG 482
KD+ G LH A GH +V ELLVK GA V +P+ A I ++L+
Sbjct: 73 KDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQH 132
Query: 483 GA 484
GA
Sbjct: 133 GA 134
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 65/138 (47%), Gaps = 22/138 (15%)
Query: 309 TPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSLCVA 368
TPLH A +V+ LLQ GA+ + ++K G A GH +
Sbjct: 46 TPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEV------------- 92
Query: 369 ARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGY 428
+ L++ GA +N DL +T LH A+ KGK E+ ++L+ G D K+ DG
Sbjct: 93 --------AELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGN 144
Query: 429 TALHCAVESGHTDVTELL 446
T L V+ G TD+ +LL
Sbjct: 145 TPLDL-VKDGDTDIQDLL 161
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 50/102 (49%)
Query: 365 LCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKD 424
L AA V ++ L++ GA ++ KD G LH A G EV +L+ G V+ D
Sbjct: 48 LHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVAD 107
Query: 425 EDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQI 466
+T LH A G ++ +LL++ GAD + +P+ +
Sbjct: 108 LWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDL 149
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 61/122 (50%), Gaps = 3/122 (2%)
Query: 243 PIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEXXXXXXXXXXXXNGARPDIR 302
P+H A + V++ LL GA+V+A K G LH A +GA ++
Sbjct: 47 PLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVA 106
Query: 303 NARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLG 362
+ TPLH A+ G ++ KLLLQ GA+ +N+ G T D+ + G + + D L+ G
Sbjct: 107 DLWKF-TPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKD-GDTDIQDLLR-G 163
Query: 363 DS 364
D+
Sbjct: 164 DA 165
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 44/105 (41%), Gaps = 1/105 (0%)
Query: 175 TLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPXXXXXXXXXXXXXXXXXXRKASTE 234
T LH A R +V+ LL+ G DV ++ + G P A
Sbjct: 46 TPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGL-VPLHNACSYGHYEVAELLVKHGAVVN 104
Query: 235 RSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHL 279
++ + P+H A G E+ KLLL GA+ +DGNT L L
Sbjct: 105 VADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDL 149
>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
pdb|3TWQ|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
Length = 175
Score = 65.5 bits (158), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 47/133 (35%), Positives = 69/133 (51%), Gaps = 8/133 (6%)
Query: 359 LKLGDS-----LCVAARKGEVRTMQRLIEAGAAINGKDLHG--WTALHRASFKGKIEVVR 411
+ LG+S L AA+ G+V T+++L ++N +D+ G T LH A+ ++ VV
Sbjct: 5 ISLGNSEADRQLLEAAKAGDVETVKKLCTV-QSVNCRDIEGRQSTPLHFAAGYNRVSVVE 63
Query: 412 MLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLH 471
L+ G DV AKD+ G LH A GH +V ELLVK GA V +P+ A
Sbjct: 64 YLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKG 123
Query: 472 YAGISRILMHGGA 484
I ++L+ GA
Sbjct: 124 KYEICKLLLQHGA 136
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 65/138 (47%), Gaps = 22/138 (15%)
Query: 309 TPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSLCVA 368
TPLH A +V+ LLQ GA+ + ++K G A GH +
Sbjct: 48 TPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEV------------- 94
Query: 369 ARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGY 428
+ L++ GA +N DL +T LH A+ KGK E+ ++L+ G D K+ DG
Sbjct: 95 --------AELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGN 146
Query: 429 TALHCAVESGHTDVTELL 446
T L V+ G TD+ +LL
Sbjct: 147 TPLDL-VKDGDTDIQDLL 163
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 51/104 (49%)
Query: 365 LCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKD 424
L AA V ++ L++ GA ++ KD G LH A G EV +L+ G V+ D
Sbjct: 50 LHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVAD 109
Query: 425 EDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAE 468
+T LH A G ++ +LL++ GAD + +P+ + +
Sbjct: 110 LWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVK 153
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 64/129 (49%), Gaps = 2/129 (1%)
Query: 243 PIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEXXXXXXXXXXXXNGARPDIR 302
P+H A + V++ LL GA+V+A K G LH A +GA ++
Sbjct: 49 PLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVA 108
Query: 303 NARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLG 362
+ TPLH A+ G ++ KLLLQ GA+ +N+ G T D+ + G + + D L+
Sbjct: 109 DLWKF-TPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKD-GDTDIQDLLRGD 166
Query: 363 DSLCVAARK 371
+L AA+K
Sbjct: 167 AALLDAAKK 175
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 44/105 (41%), Gaps = 1/105 (0%)
Query: 175 TLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPXXXXXXXXXXXXXXXXXXRKASTE 234
T LH A R +V+ LL+ G DV ++ + G P A
Sbjct: 48 TPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGL-VPLHNACSYGHYEVAELLVKHGAVVN 106
Query: 235 RSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHL 279
++ + P+H A G E+ KLLL GA+ +DGNT L L
Sbjct: 107 VADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDL 151
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/98 (40%), Positives = 57/98 (58%), Gaps = 1/98 (1%)
Query: 361 LGDS-LCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGID 419
LG S L +AA+ G T + L+ AG + + + T LH A+ +G +V +L+ G D
Sbjct: 33 LGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGAD 92
Query: 420 VDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEART 457
V+AKD TALH A E H +V ELL+K GADV ++
Sbjct: 93 VNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQS 130
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 70/140 (50%), Gaps = 21/140 (15%)
Query: 307 GDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSLC 366
G +PLH+ A G+ ++LL+ G ++ R K +T +AA GH+ +
Sbjct: 34 GTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANI----------- 82
Query: 367 VAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDED 426
++ L++ GA +N KD+ TALH A+ EVV +LI G DV + +
Sbjct: 83 ----------VEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKF 132
Query: 427 GYTALHCAVESGHTDVTELL 446
TA ++++G+ D+ E+L
Sbjct: 133 CKTAFDISIDNGNEDLAEIL 152
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 69/128 (53%), Gaps = 8/128 (6%)
Query: 238 TSTW---GPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEXXXXXXXXXXXX 294
T+ W P+HLA + GH ++LL G + +A TK T LH+A
Sbjct: 29 TTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLK 88
Query: 295 NGARPDIRNARD--GDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGH 352
+GA D+ NA+D T LH ++++V+LL++ GA+ + ++K KTA+D++ + G+
Sbjct: 89 HGA--DV-NAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGN 145
Query: 353 SRLFDALK 360
L + L+
Sbjct: 146 EDLAEILQ 153
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 71/146 (48%), Gaps = 5/146 (3%)
Query: 361 LGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDV 420
LG L AAR G+ ++ L+ GA D G + LH A+ G +L+ G+
Sbjct: 2 LGKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSR 60
Query: 421 DAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYAGISRILM 480
DA+ + T LH A GH ++ E+L+K GADV A+ ++ + A ++ + +L+
Sbjct: 61 DARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLI 120
Query: 481 HGGA---TKDGIQQTNLRQVSIQFGN 503
GA T+ +T +SI GN
Sbjct: 121 KYGADVHTQSKFCKTAF-DISIDNGN 145
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 167 DSADAQGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCST 209
++ D T LH A ++V+LL+++G DV +Q + C T
Sbjct: 94 NAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKF-CKT 135
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 43/110 (39%), Positives = 58/110 (52%), Gaps = 8/110 (7%)
Query: 358 ALKLGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKG 417
AL L SL +GE +QR+I + + G TALH A G E+V+ L+ G
Sbjct: 39 ALLLDSSL-----EGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFG 93
Query: 418 IDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIA 467
++V+A D DG+T LHCA + V + LV+ GA V A T S MQ A
Sbjct: 94 VNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMT---YSDMQTA 140
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 66/121 (54%), Gaps = 1/121 (0%)
Query: 401 ASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKN 460
+S +G+ ++V+ +I + D +++G TALH AV +GHT++ + LV+ G +V A S
Sbjct: 44 SSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDG 103
Query: 461 VSPMQIAECLHYAGISRILMHGGATKDGIQQTNLRQVSIQFGNGKVGRDQM-EGKFGMKK 519
+P+ A + + + L+ GA + ++++ + + + G Q + +G+++
Sbjct: 104 WTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQE 163
Query: 520 K 520
K
Sbjct: 164 K 164
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 62/147 (42%), Gaps = 40/147 (27%)
Query: 126 IDSGIKIMFVGSPVLVLLVK--DGEMDDLREVLERSDPAWNPADSADAQGQTLLHIAIAQ 183
I G+++ F P+ +LL +GE D ++ ++ D P D +G T LH A+
Sbjct: 25 IAHGMRVKFNPLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPND----EGITALHNAVCA 80
Query: 184 RRPDIVQLLLEFGPDVESQGRCGCSTPXXXXXXXXXXXXXXXXXXRKASTERSETSTWGP 243
+IV+ L++FG +V + +++ W P
Sbjct: 81 GHTEIVKFLVQFGVNVNA----------------------------------ADSDGWTP 106
Query: 244 IHLALRGGHLEVLKLLLIKGANVNALT 270
+H A +++V K L+ GA V A+T
Sbjct: 107 LHCAASCNNVQVCKFLVESGAAVFAMT 133
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 23/37 (62%)
Query: 244 IHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLA 280
+H A+ GH E++K L+ G NVNA DG T LH A
Sbjct: 74 LHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCA 110
Score = 32.3 bits (72), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 34/82 (41%), Gaps = 21/82 (25%)
Query: 306 DGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSL 365
+G T LH G+ ++VK L+Q G N + G T AA C +
Sbjct: 69 EGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNN------------- 115
Query: 366 CVAARKGEVRTMQRLIEAGAAI 387
V+ + L+E+GAA+
Sbjct: 116 --------VQVCKFLVESGAAV 129
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/104 (37%), Positives = 54/104 (51%)
Query: 394 GWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADV 453
G T LH AS KG I V L+ G D + KD G+T LH A GH V ELL++ A V
Sbjct: 10 GETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALV 69
Query: 454 EARTSKNVSPMQIAECLHYAGISRILMHGGATKDGIQQTNLRQV 497
+N SP+ A + I ++L+ GA+++ + LR V
Sbjct: 70 NTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPV 113
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 56/104 (53%)
Query: 365 LCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKD 424
L +A+ KG++ +++ L++ G+ N KD GWT LH A G ++VV +L+ V+
Sbjct: 14 LHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTG 73
Query: 425 EDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAE 468
+ LH A ++GH D+ +LL+ GA A + P+ +
Sbjct: 74 YQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTD 117
Score = 42.0 bits (97), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 45/99 (45%), Gaps = 1/99 (1%)
Query: 172 QGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPXXXXXXXXXXXXXXXXXXRKA 231
+G+TLLHIA + V+ LL+ G D + G TP KA
Sbjct: 9 RGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGW-TPLHEACNHGHLKVVELLLQHKA 67
Query: 232 STERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALT 270
+ P+H A + GH++++KLLL GA+ NA+
Sbjct: 68 LVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVN 106
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 53/116 (45%), Gaps = 21/116 (18%)
Query: 307 GDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSLC 366
G+T LHI + G V+ LLQ G++ +++ +G T A C H
Sbjct: 10 GETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEA--CNH-------------- 53
Query: 367 VAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDA 422
G ++ ++ L++ A +N + LH A+ G +++V++L+ G +A
Sbjct: 54 -----GHLKVVELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNA 104
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/112 (37%), Positives = 60/112 (53%), Gaps = 6/112 (5%)
Query: 356 FDALKLGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLID 415
F+ L L L ++ +GE +QR+I + + G TALH A G E+V+ L+
Sbjct: 35 FNPLAL---LLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQ 91
Query: 416 KGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIA 467
G++V+A D DG+T LHCA + V + LV+ GA V A T S MQ A
Sbjct: 92 FGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMT---YSDMQTA 140
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 66/121 (54%), Gaps = 1/121 (0%)
Query: 401 ASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKN 460
+S +G+ ++V+ +I + D +++G TALH AV +GHT++ + LV+ G +V A S
Sbjct: 44 SSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDG 103
Query: 461 VSPMQIAECLHYAGISRILMHGGATKDGIQQTNLRQVSIQFGNGKVGRDQM-EGKFGMKK 519
+P+ A + + + L+ GA + ++++ + + + G Q + +G+++
Sbjct: 104 WTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQE 163
Query: 520 K 520
K
Sbjct: 164 K 164
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 63/147 (42%), Gaps = 42/147 (28%)
Query: 126 IDSGIKIMFVGSPVLVLLVK--DGEMDDLREVLERSDPAWNPADSADAQGQTLLHIAIAQ 183
I G+++ F +P+ +LL +GE D ++ ++ D P D +G T LH A+
Sbjct: 27 IAHGMRVKF--NPLALLLDSSLEGEFDLVQRIIYEVDDPSLPND----EGITALHNAVCA 80
Query: 184 RRPDIVQLLLEFGPDVESQGRCGCSTPXXXXXXXXXXXXXXXXXXRKASTERSETSTWGP 243
+IV+ L++FG +V + +++ W P
Sbjct: 81 GHTEIVKFLVQFGVNVNA----------------------------------ADSDGWTP 106
Query: 244 IHLALRGGHLEVLKLLLIKGANVNALT 270
+H A +++V K L+ GA V A+T
Sbjct: 107 LHCAASCNNVQVCKFLVESGAAVFAMT 133
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 23/37 (62%)
Query: 244 IHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLA 280
+H A+ GH E++K L+ G NVNA DG T LH A
Sbjct: 74 LHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCA 110
Score = 32.3 bits (72), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 34/82 (41%), Gaps = 21/82 (25%)
Query: 306 DGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSL 365
+G T LH G+ ++VK L+Q G N + G T AA C +
Sbjct: 69 EGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNN------------- 115
Query: 366 CVAARKGEVRTMQRLIEAGAAI 387
V+ + L+E+GAA+
Sbjct: 116 --------VQVCKFLVESGAAV 129
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 56/86 (65%)
Query: 361 LGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDV 420
LG L AAR G+ ++ L+ GA + KD +G T LH A+ G +EVV++L++ G DV
Sbjct: 6 LGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADV 65
Query: 421 DAKDEDGYTALHCAVESGHTDVTELL 446
+A+D+ G TA ++++G+ D+ E+L
Sbjct: 66 NAQDKFGKTAFDISIDNGNEDLAEIL 91
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 40/59 (67%)
Query: 398 LHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEAR 456
L A+ G+ + VR+L+ G DV AKD++G T LH A +GH +V +LL++ GADV A+
Sbjct: 10 LLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQ 68
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 40/56 (71%)
Query: 305 RDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALK 360
++G TPLH+ A G+ ++VKLLL+ GA+ ++K GKTA+D++ + G+ L + L+
Sbjct: 37 KNGSTPLHLAARNGHLEVVKLLLEAGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 92
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/40 (57%), Positives = 30/40 (75%)
Query: 243 PIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVE 282
P+HLA R GHLEV+KLLL GA+VNA K G TA ++++
Sbjct: 42 PLHLAARNGHLEVVKLLLEAGADVNAQDKFGKTAFDISID 81
Score = 35.8 bits (81), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 45/100 (45%), Gaps = 21/100 (21%)
Query: 314 TASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSLCVAARKGE 373
A G + V++L+ GA+ ++K+G T L +AAR G
Sbjct: 13 AARAGQDDEVRILMANGADVAAKDKNGSTP---------------------LHLAARNGH 51
Query: 374 VRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRML 413
+ ++ L+EAGA +N +D G TA + G ++ +L
Sbjct: 52 LEVVKLLLEAGADVNAQDKFGKTAFDISIDNGNEDLAEIL 91
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Query: 164 NPADSA--DAQGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCG 206
N AD A D G T LH+A ++V+LLLE G DV +Q + G
Sbjct: 28 NGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQDKFG 72
>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
pdb|1K1A|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
Length = 241
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 62/223 (27%), Positives = 97/223 (43%), Gaps = 32/223 (14%)
Query: 271 KDGNTALHLAVEX----XXXXXXXXXXXNGARPDIRNARDGDTPLHITASLGYEQMVKLL 326
+DG+T LH+AV G DI N TPLH+ +V+LL
Sbjct: 7 EDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLR-QTPLHLAVITTLPSVVRLL 65
Query: 327 LQKGANKYIRNKSGKTAYDVAAECGH---------------------SRLFDALKLGDSL 365
+ GA+ ++ G+TA +A C H +R +D L +L
Sbjct: 66 VTAGASPMALDRHGQTAAHLA--CEHRSPTCLRALLDSAAPGTLDLEARNYDGLT---AL 120
Query: 366 CVAARKGEVRTMQRLIEAGAAINGKDL-HGWTALHRASFKGKIEVVRMLIDKGIDVDAKD 424
VA T+Q L+E GA I+ D+ G + L A + +V++L+ G +V+A+
Sbjct: 121 HVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQM 180
Query: 425 EDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIA 467
G +ALH A G + LV+ GAD + N +P+ +A
Sbjct: 181 YSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVA 223
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 67/165 (40%), Gaps = 34/165 (20%)
Query: 152 LREVLERSDPAWNPADSADAQGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPX 211
LR +L+ + P ++ + G T LH+A+ + VQLLLE G D+++
Sbjct: 95 LRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAV--------- 145
Query: 212 XXXXXXXXXXXXXXXXXRKASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTK 271
S P+ A+ L +++LLL GANVNA
Sbjct: 146 ------------------------DIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMY 181
Query: 272 DGNTALHLAVEXXXXXXXXXXXXNGARPDIRNARDGDTPLHITAS 316
G++ALH A +GA ++N + DTPL + S
Sbjct: 182 SGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHN-DTPLMVARS 225
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 67/256 (26%), Positives = 97/256 (37%), Gaps = 34/256 (13%)
Query: 166 ADSADAQGQTLLHIAIAQ-RRPDIVQLLLEFGP-----DVESQGRCGCSTPXXXXXXXXX 219
A AD G T LHIA+ Q P + +L+ F D+ + R TP
Sbjct: 2 ATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLR---QTPLHLAVITTL 58
Query: 220 XXXXXXXXXRKASTERSETSTWGPIHLALRGGHLEVLKLLLIKGA----NVNALTKDGNT 275
AS + HLA L+ LL A ++ A DG T
Sbjct: 59 PSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLT 118
Query: 276 ALHLAVEXXXXXXXXXXXXNGARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYI 335
ALH+AV GA D + + G +PL MV+LLLQ GAN
Sbjct: 119 ALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNA 178
Query: 336 RNKSGKTAYDVAAECGHSRLFDALKLGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGW 395
+ SG +A HS A+ +G + ++ L+ +GA + K+ H
Sbjct: 179 QMYSGSSAL-------HS--------------ASGRGLLPLVRTLVRSGADSSLKNCHND 217
Query: 396 TALHRASFKGKIEVVR 411
T L A + I+++R
Sbjct: 218 TPLMVARSRRVIDILR 233
Score = 28.9 bits (63), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
Query: 424 DEDGYTALHCAVESGHTDVTELLV----KKGADVEARTSKNVSPMQIAECLHYAGISRIL 479
DEDG T LH AV G+ LV + G +++ + +P+ +A + R+L
Sbjct: 6 DEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLL 65
Query: 480 MHGGAT 485
+ GA+
Sbjct: 66 VTAGAS 71
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 55/86 (63%)
Query: 361 LGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDV 420
LG L AAR G+ ++ L+ GA + KD +G T LH A+ G +EVV++L++ G DV
Sbjct: 24 LGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADV 83
Query: 421 DAKDEDGYTALHCAVESGHTDVTELL 446
A+D+ G TA ++++G+ D+ E+L
Sbjct: 84 XAQDKFGKTAFDISIDNGNEDLAEIL 109
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 40/59 (67%)
Query: 398 LHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEAR 456
L A+ G+ + VR+L+ G DV AKD++G T LH A +GH +V +LL++ GADV A+
Sbjct: 28 LLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQ 86
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 40/56 (71%)
Query: 305 RDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALK 360
++G TPLH+ A G+ ++VKLLL+ GA+ ++K GKTA+D++ + G+ L + L+
Sbjct: 55 KNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEILQ 110
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/40 (55%), Positives = 29/40 (72%)
Query: 243 PIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVE 282
P+HLA R GHLEV+KLLL GA+V A K G TA ++++
Sbjct: 60 PLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISID 99
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Query: 164 NPADSA--DAQGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCG 206
N AD A D G T LH+A ++V+LLLE G DV +Q + G
Sbjct: 46 NGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFG 90
Score = 33.1 bits (74), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 44/100 (44%), Gaps = 21/100 (21%)
Query: 314 TASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSLCVAARKGE 373
A G + V++L+ GA+ ++K+G T L +AAR G
Sbjct: 31 AARAGQDDEVRILMANGADVAAKDKNGSTP---------------------LHLAARNGH 69
Query: 374 VRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRML 413
+ ++ L+EAGA + +D G TA + G ++ +L
Sbjct: 70 LEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109
>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|B Chain B, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|C Chain C, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
Length = 240
Score = 62.4 bits (150), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 63/238 (26%), Positives = 105/238 (44%), Gaps = 24/238 (10%)
Query: 233 TERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEXXXXXXXXXX 292
T + STW + A + G E + L+ G +V K+ T LH A
Sbjct: 3 THIDDYSTWDIVK-ATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYY 61
Query: 293 XXNGARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGH 352
GA D TPLH G+ MV L++ GA+ + + G + +AA+ GH
Sbjct: 62 ISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGH 121
Query: 353 SRLFDALKLGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKG-KIEVVR 411
+ + + LI G ++ D +G T L A+++ ++ R
Sbjct: 122 TSI---------------------VAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTR 160
Query: 412 MLIDKGIDVDAKDE-DGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAE 468
+L+ + V+ D+ TALH AV +G+T V LL++ GA+V+A+ K S + +A+
Sbjct: 161 LLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAK 218
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 87/185 (47%), Gaps = 16/185 (8%)
Query: 244 IHLALRGGHLEVLKLLLIKGANVNALTKDGN-TALHLAVEXXXXXXXXXXXXNGARPDIR 302
+H A ++++K + KGA V+ L D N T LH A GA P +
Sbjct: 46 LHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLI 105
Query: 303 NARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHS----RL--- 355
+ +G + +H+ A G+ +V L+ KG + + +++G T AA HS RL
Sbjct: 106 DG-EGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLT 164
Query: 356 FD-ALKLGD------SLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIE 408
F+ ++ LGD +L A G + L+EAGA ++ +++ G +AL A + +
Sbjct: 165 FNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVW 224
Query: 409 VVRML 413
++ L
Sbjct: 225 MINHL 229
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 72/181 (39%), Gaps = 1/181 (0%)
Query: 170 DAQGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPXXXXXXXXXXXXXXXXXXR 229
D + TLLH A R D+V+ + G V+ G STP
Sbjct: 39 DKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKY 98
Query: 230 KASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEXXXXXXX 289
A + IHLA + GH ++ L+ KG +V+ + ++G T L A
Sbjct: 99 GADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDP 158
Query: 290 XXXXXN-GARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAA 348
++ + +T LH G ++ LLL+ GAN +N G++A D+A
Sbjct: 159 TRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAK 218
Query: 349 E 349
+
Sbjct: 219 Q 219
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 55/128 (42%), Gaps = 1/128 (0%)
Query: 368 AARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDED- 426
A + G + L+EAG + D T LH A+ +I++V+ I KG VD D
Sbjct: 16 ATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDL 75
Query: 427 GYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYAGISRILMHGGATK 486
T LH A GH + L+K GAD + S + +A + I L+ G
Sbjct: 76 NSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDV 135
Query: 487 DGIQQTNL 494
D + Q +
Sbjct: 136 DMMDQNGM 143
>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|E Chain E, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 228
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 86/186 (46%), Gaps = 19/186 (10%)
Query: 301 IRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRN---KSGKTAYDVAAECGHSRLFD 357
++ +DG PLH + S ++ LL K N + + SG T + +A G+ +
Sbjct: 30 LQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVK 89
Query: 358 AL----------KLGDS----LCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASF 403
+L K+ + L +A K Q LIE GA++ KD LHRA+
Sbjct: 90 SLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAAS 149
Query: 404 KGKIEVVRMLIDKGID-VDAKDEDGYTALHCAVESGHTDVTELLVKK-GADVEARTSKNV 461
G ++++ +L G V+ +D+ G+T L A+ GH D LLV+K GA+ + +K
Sbjct: 150 VGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGA 209
Query: 462 SPMQIA 467
+A
Sbjct: 210 KAEDVA 215
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 61/128 (47%), Gaps = 13/128 (10%)
Query: 237 ETSTWGPIHLALRGGHLEVLKLLLIK--GANVNALTKDGNTALHLAVEXXXXXXXXXXXX 294
+ S W P H+A G+LEV+K L + ++N +T G T LHLAV
Sbjct: 69 DDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIE 128
Query: 295 NGARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSR 354
NGA I++ + PLH AS+G ++++LL GK+A + + G +
Sbjct: 129 NGASVRIKD-KFNQIPLHRAASVGSLKLIELLC----------GLGKSAVNWQDKQGWTP 177
Query: 355 LFDALKLG 362
LF AL G
Sbjct: 178 LFHALAEG 185
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 45/111 (40%), Gaps = 1/111 (0%)
Query: 172 QGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPXXXXXXXXXXXXXXXXXXRKA 231
QG T LH+A+ ++ ++ Q L+E G V + + K+
Sbjct: 106 QGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKS 165
Query: 232 STERSETSTWGPIHLALRGGHLEVLKLLLIK-GANVNALTKDGNTALHLAV 281
+ + W P+ AL GH + LL+ K GA + + G A +A+
Sbjct: 166 AVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVAL 216
>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein
Gankyrin, An Interactor Of Rb And Cdk46
Length = 231
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 86/186 (46%), Gaps = 19/186 (10%)
Query: 301 IRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRN---KSGKTAYDVAAECGHSRLFD 357
++ +DG PLH + S ++ LL K N + + SG T + +A G+ +
Sbjct: 30 LQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVK 89
Query: 358 AL----------KLGDS----LCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASF 403
+L K+ + L +A K Q LIE GA++ KD LHRA+
Sbjct: 90 SLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAAS 149
Query: 404 KGKIEVVRMLIDKGID-VDAKDEDGYTALHCAVESGHTDVTELLVKK-GADVEARTSKNV 461
G ++++ +L G V+ +D+ G+T L A+ GH D LLV+K GA+ + +K
Sbjct: 150 VGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGA 209
Query: 462 SPMQIA 467
+A
Sbjct: 210 KAEDVA 215
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 61/128 (47%), Gaps = 13/128 (10%)
Query: 237 ETSTWGPIHLALRGGHLEVLKLLLIK--GANVNALTKDGNTALHLAVEXXXXXXXXXXXX 294
+ S W P H+A G+LEV+K L + ++N +T G T LHLAV
Sbjct: 69 DDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIE 128
Query: 295 NGARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSR 354
NGA I++ + PLH AS+G ++++LL GK+A + + G +
Sbjct: 129 NGASVRIKD-KFNQIPLHRAASVGSLKLIELLC----------GLGKSAVNWQDKQGWTP 177
Query: 355 LFDALKLG 362
LF AL G
Sbjct: 178 LFHALAEG 185
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 45/111 (40%), Gaps = 1/111 (0%)
Query: 172 QGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPXXXXXXXXXXXXXXXXXXRKA 231
QG T LH+A+ ++ ++ Q L+E G V + + K+
Sbjct: 106 QGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKS 165
Query: 232 STERSETSTWGPIHLALRGGHLEVLKLLLIK-GANVNALTKDGNTALHLAV 281
+ + W P+ AL GH + LL+ K GA + + G A +A+
Sbjct: 166 AVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVAL 216
>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two
Different Crystal Forms
Length = 243
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 86/186 (46%), Gaps = 19/186 (10%)
Query: 301 IRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRN---KSGKTAYDVAAECGHSRLFD 357
++ +DG PLH + S ++ LL K N + + SG T + +A G+ +
Sbjct: 30 LQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVK 89
Query: 358 AL----------KLGDS----LCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASF 403
+L K+ + L +A K Q LIE GA++ KD LHRA+
Sbjct: 90 SLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAAS 149
Query: 404 KGKIEVVRMLIDKGID-VDAKDEDGYTALHCAVESGHTDVTELLVKK-GADVEARTSKNV 461
G ++++ +L G V+ +D+ G+T L A+ GH D LLV+K GA+ + +K
Sbjct: 150 VGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGA 209
Query: 462 SPMQIA 467
+A
Sbjct: 210 KAEDVA 215
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 61/128 (47%), Gaps = 13/128 (10%)
Query: 237 ETSTWGPIHLALRGGHLEVLKLLLIK--GANVNALTKDGNTALHLAVEXXXXXXXXXXXX 294
+ S W P H+A G+LEV+K L + ++N +T G T LHLAV
Sbjct: 69 DDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIE 128
Query: 295 NGARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSR 354
NGA I++ + PLH AS+G ++++LL GK+A + + G +
Sbjct: 129 NGASVRIKD-KFNQIPLHRAASVGSLKLIELLC----------GLGKSAVNWQDKQGWTP 177
Query: 355 LFDALKLG 362
LF AL G
Sbjct: 178 LFHALAEG 185
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 45/111 (40%), Gaps = 1/111 (0%)
Query: 172 QGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPXXXXXXXXXXXXXXXXXXRKA 231
QG T LH+A+ ++ ++ Q L+E G V + + K+
Sbjct: 106 QGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKS 165
Query: 232 STERSETSTWGPIHLALRGGHLEVLKLLLIK-GANVNALTKDGNTALHLAV 281
+ + W P+ AL GH + LL+ K GA + + G A +A+
Sbjct: 166 AVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVAL 216
>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Rfxank
Length = 172
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 60/115 (52%)
Query: 365 LCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKD 424
L A+ GE+ T++ L+E GA + +AL AS G ++V +L+++ +D++ D
Sbjct: 40 LIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYD 99
Query: 425 EDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYAGISRIL 479
+G T L AV H E L+ +GAD+ +PM +A L Y + +++
Sbjct: 100 WNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVI 154
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 68/149 (45%), Gaps = 25/149 (16%)
Query: 298 RPDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFD 357
+PD R G TPL ++ G + V+ LL+ GA+ +I K ++A +A+ G++ +
Sbjct: 31 KPDER----GFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDI-- 84
Query: 358 ALKLGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKG 417
+ L+E IN D +G T L A ++ V L+ +G
Sbjct: 85 -------------------VGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARG 125
Query: 418 IDVDAKDEDGYTALHCAVESGHTDVTELL 446
D+ + + GYT + AV G+ V +++
Sbjct: 126 ADLTTEADSGYTPMDLAVALGYRKVQQVI 154
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 46/185 (24%), Positives = 73/185 (39%), Gaps = 40/185 (21%)
Query: 143 LVKDGEMDDLREVLERSDPAWNPADSADAQGQTLLHIAIAQRRPDIVQLLLEFGPDVESQ 202
L GE+D L+E L + D N + D +G T L A A + V+ LLE+G D
Sbjct: 9 LAAQGELDQLKEHLRKGD---NLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHIL 65
Query: 203 GRCGCSTPXXXXXXXXXXXXXXXXXXRKASTERSETSTWGPIHLALRGGHLEVLKLLLIK 262
+ ER + LA GG+ +++ LLL +
Sbjct: 66 AK-----------------------------ERESA-----LSLASTGGYTDIVGLLLER 91
Query: 263 GANVNALTKDGNTALHLAVEXXXXXXXXXXXXNGARPDIRNARD-GDTPLHITASLGYEQ 321
++N +G T L AV GA D+ D G TP+ + +LGY +
Sbjct: 92 DVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGA--DLTTEADSGYTPMDLAVALGYRK 149
Query: 322 MVKLL 326
+ +++
Sbjct: 150 VQQVI 154
Score = 32.7 bits (73), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Query: 397 ALHRASFKGKIEVVRMLIDKGID-VDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEA 455
++H+ + +G+++ ++ + KG + V+ DE G+T L A G + L++ GAD
Sbjct: 5 SIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHI 64
Query: 456 RTSKNVSPMQIAECLHYAGISRILM 480
+ S + +A Y I +L+
Sbjct: 65 LAKERESALSLASTGGYTDIVGLLL 89
>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank
Length = 172
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 60/115 (52%)
Query: 365 LCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKD 424
L A+ GE+ T++ L+E GA + +AL AS G ++V +L+++ +D++ D
Sbjct: 40 LIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYD 99
Query: 425 EDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYAGISRIL 479
+G T L AV H E L+ +GAD+ +PM +A L Y + +++
Sbjct: 100 WNGGTPLLYAVHGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVI 154
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 68/149 (45%), Gaps = 25/149 (16%)
Query: 298 RPDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFD 357
+PD R G TPL ++ G + V+ LL+ GA+ +I K ++A +A+ G++ +
Sbjct: 31 KPDER----GFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDI-- 84
Query: 358 ALKLGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKG 417
+ L+E IN D +G T L A ++ V L+ +G
Sbjct: 85 -------------------VGLLLERDVDINIYDWNGGTPLLYAVHGNHVKCVEALLARG 125
Query: 418 IDVDAKDEDGYTALHCAVESGHTDVTELL 446
D+ + + GYT + AV G+ V +++
Sbjct: 126 ADLTTEADSGYTPMDLAVALGYRKVQQVI 154
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 46/185 (24%), Positives = 73/185 (39%), Gaps = 40/185 (21%)
Query: 143 LVKDGEMDDLREVLERSDPAWNPADSADAQGQTLLHIAIAQRRPDIVQLLLEFGPDVESQ 202
L GE+D L+E L + D N + D +G T L A A + V+ LLE+G D
Sbjct: 9 LAAQGELDQLKEHLRKGD---NLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHIL 65
Query: 203 GRCGCSTPXXXXXXXXXXXXXXXXXXRKASTERSETSTWGPIHLALRGGHLEVLKLLLIK 262
+ ER + LA GG+ +++ LLL +
Sbjct: 66 AK-----------------------------ERESA-----LSLASTGGYTDIVGLLLER 91
Query: 263 GANVNALTKDGNTALHLAVEXXXXXXXXXXXXNGARPDIRNARD-GDTPLHITASLGYEQ 321
++N +G T L AV GA D+ D G TP+ + +LGY +
Sbjct: 92 DVDINIYDWNGGTPLLYAVHGNHVKCVEALLARGA--DLTTEADSGYTPMDLAVALGYRK 149
Query: 322 MVKLL 326
+ +++
Sbjct: 150 VQQVI 154
Score = 32.3 bits (72), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Query: 397 ALHRASFKGKIEVVRMLIDKGID-VDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEA 455
++H+ + +G+++ ++ + KG + V+ DE G+T L A G + L++ GAD
Sbjct: 5 SIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHI 64
Query: 456 RTSKNVSPMQIAECLHYAGISRILM 480
+ S + +A Y I +L+
Sbjct: 65 LAKERESALSLASTGGYTDIVGLLL 89
>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary
Complex Bound To Dna
Length = 373
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 63/234 (26%), Positives = 100/234 (42%), Gaps = 29/234 (12%)
Query: 257 KLLLIKGANVNALTKDGNTALHLAVEXXXXXXXXXXXXNGARPDIRNARDGDTPLHITAS 316
K + GA+VNA D NT L LAV GA P I N + A+
Sbjct: 150 KECIAAGADVNAXDCDENTPLXLAVLARRRRLVAYLXKAGADPTIYNKSERSALHQAAAN 209
Query: 317 LGYEQMVKLLLQKGANKYIR--NKSGKTAYDVAAECGHSRLFDALKLGDSLCVAARKGEV 374
+ V L I +++G TA + A H+ D +V
Sbjct: 210 RDFGXXVYXLNSTKLKGDIEELDRNGXTALXIVA---HNEGRD---------------QV 251
Query: 375 RTMQRLIEAGAAI--------NGKDLHGWTALHRASFKGKIEVVRMLI-DKGIDVDAKDE 425
+ + L+E GA + + + G TALH A+ +V+ L+ +KG + D +DE
Sbjct: 252 ASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNXPIVKYLVGEKGSNKDKQDE 311
Query: 426 DGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYAGISRIL 479
DG T + A + G +V L+++GA VEA + + + Q+A+ ++ I I
Sbjct: 312 DGKTPIXLAAQEGRIEVVXYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIF 365
>pdb|3SO8|A Chain A, Crystal Structure Of Ankra
Length = 162
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 62/117 (52%), Gaps = 4/117 (3%)
Query: 365 LCVAARKGEVRTMQRLIEAGA--AINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDA 422
L AA G++ ++ L++ GA + GK +AL A KG ++V+ML+D G+DV+
Sbjct: 38 LMWAAAHGQIAVVEFLLQNGADPQLLGKGRE--SALSLACSKGYTDIVKMLLDCGVDVNE 95
Query: 423 KDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYAGISRIL 479
D +G T L AV H ++L++ GAD T + M +A L Y + +++
Sbjct: 96 YDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVI 152
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 65/142 (45%), Gaps = 21/142 (14%)
Query: 305 RDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDS 364
+G TPL A+ G +V+ LLQ GA+ + K ++A
Sbjct: 32 EEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESA--------------------- 70
Query: 365 LCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKD 424
L +A KG ++ L++ G +N D +G T L A ++ V+ML++ G D +
Sbjct: 71 LSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIET 130
Query: 425 EDGYTALHCAVESGHTDVTELL 446
+ GY ++ AV G+ V +++
Sbjct: 131 DSGYNSMDLAVALGYRSVQQVI 152
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 55/116 (47%)
Query: 369 ARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGY 428
A +GE+ + IE IN D G+T L A+ G+I VV L+ G D +
Sbjct: 9 AAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRE 68
Query: 429 TALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYAGISRILMHGGA 484
+AL A G+TD+ ++L+ G DV +P+ A ++ ++L+ GA
Sbjct: 69 SALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGA 124
Score = 36.6 bits (83), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 44/87 (50%)
Query: 397 ALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEAR 456
++H+ + +G++ + I++ ++ DE+G+T L A G V E L++ GAD +
Sbjct: 4 SVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLL 63
Query: 457 TSKNVSPMQIAECLHYAGISRILMHGG 483
S + +A Y I ++L+ G
Sbjct: 64 GKGRESALSLACSKGYTDIVKMLLDCG 90
Score = 32.7 bits (73), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 42/184 (22%), Positives = 71/184 (38%), Gaps = 39/184 (21%)
Query: 143 LVKDGEMDDLREVLERSDPAWNPADSADAQGQTLLHIAIAQRRPDIVQLLLEFGPDVESQ 202
L GEM L +E+ N + D +G T L A A + +V+ LL+ G D +
Sbjct: 8 LAAQGEMLYLATRIEQE----NVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLL 63
Query: 203 GRCGCSTPXXXXXXXXXXXXXXXXXXRKASTERSETSTWGPIHLALRGGHLEVLKLLLIK 262
G+ R+++ + LA G+ +++K+LL
Sbjct: 64 GK-----------------------GRESA-----------LSLACSKGYTDIVKMLLDC 89
Query: 263 GANVNALTKDGNTALHLAVEXXXXXXXXXXXXNGARPDIRNARDGDTPLHITASLGYEQM 322
G +VN +G T L AV +GA P I G + + +LGY +
Sbjct: 90 GVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIE-TDSGYNSMDLAVALGYRSV 148
Query: 323 VKLL 326
+++
Sbjct: 149 QQVI 152
>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 183
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 62/117 (52%), Gaps = 4/117 (3%)
Query: 365 LCVAARKGEVRTMQRLIEAGA--AINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDA 422
L AA G++ ++ L++ GA + GK +AL A KG ++V+ML+D G+DV+
Sbjct: 56 LMWAAAHGQIAVVEFLLQNGADPQLLGKGRE--SALSLACSKGYTDIVKMLLDCGVDVNE 113
Query: 423 KDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYAGISRIL 479
D +G T L AV H ++L++ GAD T + M +A L Y + +++
Sbjct: 114 YDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVI 170
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 65/142 (45%), Gaps = 21/142 (14%)
Query: 305 RDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDS 364
+G TPL A+ G +V+ LLQ GA+ + K ++A
Sbjct: 50 EEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESA--------------------- 88
Query: 365 LCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKD 424
L +A KG ++ L++ G +N D +G T L A ++ V+ML++ G D +
Sbjct: 89 LSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIET 148
Query: 425 EDGYTALHCAVESGHTDVTELL 446
+ GY ++ AV G+ V +++
Sbjct: 149 DSGYNSMDLAVALGYRSVQQVI 170
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 55/116 (47%)
Query: 369 ARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGY 428
A +GE+ + IE IN D G+T L A+ G+I VV L+ G D +
Sbjct: 27 AAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRE 86
Query: 429 TALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYAGISRILMHGGA 484
+AL A G+TD+ ++L+ G DV +P+ A ++ ++L+ GA
Sbjct: 87 SALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGA 142
Score = 36.6 bits (83), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 44/87 (50%)
Query: 397 ALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEAR 456
++H+ + +G++ + I++ ++ DE+G+T L A G V E L++ GAD +
Sbjct: 22 SVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLL 81
Query: 457 TSKNVSPMQIAECLHYAGISRILMHGG 483
S + +A Y I ++L+ G
Sbjct: 82 GKGRESALSLACSKGYTDIVKMLLDCG 108
Score = 33.1 bits (74), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 45/198 (22%), Positives = 77/198 (38%), Gaps = 41/198 (20%)
Query: 131 KIMFVGSPVLVL--LVKDGEMDDLREVLERSDPAWNPADSADAQGQTLLHIAIAQRRPDI 188
+ F G+ L + L GEM L +E+ N + D +G T L A A + +
Sbjct: 12 NLYFQGANSLSVHQLAAQGEMLYLATRIEQE----NVINHTDEEGFTPLMWAAAHGQIAV 67
Query: 189 VQLLLEFGPDVESQGRCGCSTPXXXXXXXXXXXXXXXXXXRKASTERSETSTWGPIHLAL 248
V+ LL+ G D + G+ R+++ + LA
Sbjct: 68 VEFLLQNGADPQLLGK-----------------------GRESA-----------LSLAC 93
Query: 249 RGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEXXXXXXXXXXXXNGARPDIRNARDGD 308
G+ +++K+LL G +VN +G T L AV +GA P I G
Sbjct: 94 SKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIE-TDSGY 152
Query: 309 TPLHITASLGYEQMVKLL 326
+ + +LGY + +++
Sbjct: 153 NSMDLAVALGYRSVQQVI 170
>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
pdb|2HE0|B Chain B, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
Length = 253
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/192 (28%), Positives = 77/192 (40%), Gaps = 1/192 (0%)
Query: 170 DAQGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPXXXXXXXXXXXXXXXXXXR 229
D G T LH+A A R D + LLE D Q G + R
Sbjct: 54 DRTGATALHLAAAYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNR 113
Query: 230 KASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEXXXXXXX 289
+ P+ LA R +L+ L+ A+VNA+ G +ALH A
Sbjct: 114 ATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAA 173
Query: 290 XXXXXNGARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAE 349
NGA D++N R+ +TPL + A G + K+LL AN+ I + + D+A E
Sbjct: 174 VVLLKNGANKDMQNNRE-ETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQE 232
Query: 350 CGHSRLFDALKL 361
H + L L
Sbjct: 233 RMHHDIVRLLDL 244
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 57/112 (50%), Gaps = 2/112 (1%)
Query: 380 LIEAGAAI-NGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESG 438
I GA++ N D G TALH A+ + + + L++ D + +D G T LH AV +
Sbjct: 42 FIYQGASLHNQTDRTGATALHLAAAYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSAD 101
Query: 439 HTDVTELLVK-KGADVEARTSKNVSPMQIAECLHYAGISRILMHGGATKDGI 489
V ++L++ + D++AR +P+ +A L G+ L++ A + +
Sbjct: 102 AQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAV 153
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 80/188 (42%), Gaps = 13/188 (6%)
Query: 305 RDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDAL----- 359
R G T LH+ A+ K LL+ A+ I++ G+T A +F L
Sbjct: 55 RTGATALHLAAAYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRA 114
Query: 360 -----KLGDS---LCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVR 411
++ D L +AAR ++ LI + A +N D G +ALH A+ ++
Sbjct: 115 TDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAV 174
Query: 412 MLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLH 471
+L+ G + D ++ T L A G + ++L+ A+ + + P IA+
Sbjct: 175 VLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERM 234
Query: 472 YAGISRIL 479
+ I R+L
Sbjct: 235 HHDIVRLL 242
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 58/125 (46%), Gaps = 1/125 (0%)
Query: 364 SLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLI-DKGIDVDA 422
+L +AA +RL+EA A N +D G T LH A V ++LI ++ D+DA
Sbjct: 60 ALHLAAAYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDA 119
Query: 423 KDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYAGISRILMHG 482
+ DG T L A + E L+ ADV A S + A ++ + +L+
Sbjct: 120 RMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKN 179
Query: 483 GATKD 487
GA KD
Sbjct: 180 GANKD 184
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 52/203 (25%), Positives = 74/203 (36%), Gaps = 21/203 (10%)
Query: 244 IHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEXXXXXXXXXXXXNGARPDIRN 303
+HLA + K LL A+ N G T LH AV N A
Sbjct: 61 LHLAAAYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDAR 120
Query: 304 ARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLGD 363
DG TPL + A L E M++ L+ A+ + GK+A
Sbjct: 121 MHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSA-------------------- 160
Query: 364 SLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAK 423
L AA V L++ GA + ++ T L A+ +G E ++L+D + D
Sbjct: 161 -LHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDIT 219
Query: 424 DEDGYTALHCAVESGHTDVTELL 446
D A E H D+ LL
Sbjct: 220 DHMDRLPRDIAQERMHHDIVRLL 242
>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
pdb|3V31|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 167
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 62/117 (52%), Gaps = 4/117 (3%)
Query: 365 LCVAARKGEVRTMQRLIEAGA--AINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDA 422
L AA G++ ++ L++ GA + GK +AL A KG ++V+ML+D G+DV+
Sbjct: 40 LMWAAAHGQIAVVEFLLQNGADPQLLGKGRE--SALSLACSKGYTDIVKMLLDCGVDVNE 97
Query: 423 KDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYAGISRIL 479
D +G T L AV H ++L++ GAD T + M +A L Y + +++
Sbjct: 98 YDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVI 154
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 65/142 (45%), Gaps = 21/142 (14%)
Query: 305 RDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDS 364
+G TPL A+ G +V+ LLQ GA+ + K ++A
Sbjct: 34 EEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESA--------------------- 72
Query: 365 LCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKD 424
L +A KG ++ L++ G +N D +G T L A ++ V+ML++ G D +
Sbjct: 73 LSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIET 132
Query: 425 EDGYTALHCAVESGHTDVTELL 446
+ GY ++ AV G+ V +++
Sbjct: 133 DSGYNSMDLAVALGYRSVQQVI 154
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 55/116 (47%)
Query: 369 ARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGY 428
A +GE+ + IE IN D G+T L A+ G+I VV L+ G D +
Sbjct: 11 AAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRE 70
Query: 429 TALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYAGISRILMHGGA 484
+AL A G+TD+ ++L+ G DV +P+ A ++ ++L+ GA
Sbjct: 71 SALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGA 126
Score = 36.2 bits (82), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 44/87 (50%)
Query: 397 ALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEAR 456
++H+ + +G++ + I++ ++ DE+G+T L A G V E L++ GAD +
Sbjct: 6 SVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLL 65
Query: 457 TSKNVSPMQIAECLHYAGISRILMHGG 483
S + +A Y I ++L+ G
Sbjct: 66 GKGRESALSLACSKGYTDIVKMLLDCG 92
Score = 32.7 bits (73), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 42/184 (22%), Positives = 71/184 (38%), Gaps = 39/184 (21%)
Query: 143 LVKDGEMDDLREVLERSDPAWNPADSADAQGQTLLHIAIAQRRPDIVQLLLEFGPDVESQ 202
L GEM L +E+ N + D +G T L A A + +V+ LL+ G D +
Sbjct: 10 LAAQGEMLYLATRIEQE----NVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLL 65
Query: 203 GRCGCSTPXXXXXXXXXXXXXXXXXXRKASTERSETSTWGPIHLALRGGHLEVLKLLLIK 262
G+ R+++ + LA G+ +++K+LL
Sbjct: 66 GK-----------------------GRESA-----------LSLACSKGYTDIVKMLLDC 91
Query: 263 GANVNALTKDGNTALHLAVEXXXXXXXXXXXXNGARPDIRNARDGDTPLHITASLGYEQM 322
G +VN +G T L AV +GA P I G + + +LGY +
Sbjct: 92 GVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIE-TDSGYNSMDLAVALGYRSV 150
Query: 323 VKLL 326
+++
Sbjct: 151 QQVI 154
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 256
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 55/198 (27%), Positives = 79/198 (39%), Gaps = 4/198 (2%)
Query: 167 DSADAQGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPXXXXXXXXXXXXXXXX 226
+ D G+T LH+A R D + LLE D Q G +
Sbjct: 52 NQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILI 111
Query: 227 XXRKASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEXXXX 286
R + P+ LA R +L+ L+ A+VNA+ G +ALH A
Sbjct: 112 RNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNV 171
Query: 287 XXXXXXXXNGARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDV 346
NGA D++N R+ +TPL + A G + K+LL AN+ I + + D+
Sbjct: 172 DAAVVLLKNGANKDMQNNRE-ETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDI 230
Query: 347 AAECGHS---RLFDALKL 361
A E H RL D L
Sbjct: 231 AQERMHHDIVRLLDEYNL 248
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 80/188 (42%), Gaps = 13/188 (6%)
Query: 305 RDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDAL----- 359
R G+T LH+ A K LL+ A+ I++ G+T A +F L
Sbjct: 56 RTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRA 115
Query: 360 -----KLGDS---LCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVR 411
++ D L +AAR ++ LI + A +N D G +ALH A+ ++
Sbjct: 116 TDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAV 175
Query: 412 MLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLH 471
+L+ G + D ++ T L A G + ++L+ A+ + + P IA+
Sbjct: 176 VLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERM 235
Query: 472 YAGISRIL 479
+ I R+L
Sbjct: 236 HHDIVRLL 243
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 59/125 (47%), Gaps = 1/125 (0%)
Query: 364 SLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLI-DKGIDVDA 422
+L +AAR +RL+EA A N +D G T LH A V ++LI ++ D+DA
Sbjct: 61 ALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDA 120
Query: 423 KDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYAGISRILMHG 482
+ DG T L A + E L+ ADV A S + A ++ + +L+
Sbjct: 121 RMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKN 180
Query: 483 GATKD 487
GA KD
Sbjct: 181 GANKD 185
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 53/203 (26%), Positives = 75/203 (36%), Gaps = 21/203 (10%)
Query: 244 IHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEXXXXXXXXXXXXNGARPDIRN 303
+HLA R + K LL A+ N G T LH AV N A
Sbjct: 62 LHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDAR 121
Query: 304 ARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLGD 363
DG TPL + A L E M++ L+ A+ + GK+A
Sbjct: 122 MHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSA-------------------- 161
Query: 364 SLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAK 423
L AA V L++ GA + ++ T L A+ +G E ++L+D + D
Sbjct: 162 -LHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDIT 220
Query: 424 DEDGYTALHCAVESGHTDVTELL 446
D A E H D+ LL
Sbjct: 221 DHMDRLPRDIAQERMHHDIVRLL 243
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 29/62 (46%)
Query: 424 DEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYAGISRILMHGG 483
D G TALH A +D + L++ AD + + +P+ A G+ +IL+
Sbjct: 55 DRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNR 114
Query: 484 AT 485
AT
Sbjct: 115 AT 116
>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution.
pdb|2F8Y|B Chain B, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution
Length = 223
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 55/198 (27%), Positives = 79/198 (39%), Gaps = 4/198 (2%)
Query: 167 DSADAQGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPXXXXXXXXXXXXXXXX 226
+ D G+T LH+A R D + LLE D Q G +
Sbjct: 19 NQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILI 78
Query: 227 XXRKASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEXXXX 286
R + P+ LA R +L+ L+ A+VNA+ G +ALH A
Sbjct: 79 RNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNV 138
Query: 287 XXXXXXXXNGARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDV 346
NGA D++N R+ +TPL + A G + K+LL AN+ I + + D+
Sbjct: 139 DAAVVLLKNGANKDMQNNRE-ETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDI 197
Query: 347 AAECGHS---RLFDALKL 361
A E H RL D L
Sbjct: 198 AQERMHHDIVRLLDEYNL 215
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 80/188 (42%), Gaps = 13/188 (6%)
Query: 305 RDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDAL----- 359
R G+T LH+ A K LL+ A+ I++ G+T A +F L
Sbjct: 23 RTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRA 82
Query: 360 -----KLGDS---LCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVR 411
++ D L +AAR ++ LI + A +N D G +ALH A+ ++
Sbjct: 83 TDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAV 142
Query: 412 MLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLH 471
+L+ G + D ++ T L A G + ++L+ A+ + + P IA+
Sbjct: 143 VLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERM 202
Query: 472 YAGISRIL 479
+ I R+L
Sbjct: 203 HHDIVRLL 210
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 59/125 (47%), Gaps = 1/125 (0%)
Query: 364 SLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLI-DKGIDVDA 422
+L +AAR +RL+EA A N +D G T LH A V ++LI ++ D+DA
Sbjct: 28 ALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDA 87
Query: 423 KDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYAGISRILMHG 482
+ DG T L A + E L+ ADV A S + A ++ + +L+
Sbjct: 88 RMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKN 147
Query: 483 GATKD 487
GA KD
Sbjct: 148 GANKD 152
Score = 37.0 bits (84), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 53/203 (26%), Positives = 75/203 (36%), Gaps = 21/203 (10%)
Query: 244 IHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEXXXXXXXXXXXXNGARPDIRN 303
+HLA R + K LL A+ N G T LH AV N A
Sbjct: 29 LHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDAR 88
Query: 304 ARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLGD 363
DG TPL + A L E M++ L+ A+ + GK+A
Sbjct: 89 MHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSA-------------------- 128
Query: 364 SLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAK 423
L AA V L++ GA + ++ T L A+ +G E ++L+D + D
Sbjct: 129 -LHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDIT 187
Query: 424 DEDGYTALHCAVESGHTDVTELL 446
D A E H D+ LL
Sbjct: 188 DHMDRLPRDIAQERMHHDIVRLL 210
Score = 32.0 bits (71), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 29/62 (46%)
Query: 424 DEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYAGISRILMHGG 483
D G TALH A +D + L++ AD + + +P+ A G+ +IL+
Sbjct: 22 DRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNR 81
Query: 484 AT 485
AT
Sbjct: 82 AT 83
>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain
pdb|1YYH|B Chain B, Crystal Structure Of The Human Notch 1 Ankyrin Domain
Length = 253
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 53/192 (27%), Positives = 77/192 (40%), Gaps = 1/192 (0%)
Query: 170 DAQGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPXXXXXXXXXXXXXXXXXXR 229
D G+T LH+A R D + LLE D Q G + R
Sbjct: 54 DRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNR 113
Query: 230 KASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEXXXXXXX 289
+ P+ LA R +L+ L+ A+VNA+ G +ALH A
Sbjct: 114 ATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAA 173
Query: 290 XXXXXNGARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAE 349
NGA D++N R+ +TPL + A G + K+LL AN+ I + + D+A E
Sbjct: 174 VVLLKNGANKDMQNNRE-ETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQE 232
Query: 350 CGHSRLFDALKL 361
H + L L
Sbjct: 233 RMHHDIVRLLDL 244
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 80/188 (42%), Gaps = 13/188 (6%)
Query: 305 RDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDAL----- 359
R G+T LH+ A K LL+ A+ I++ G+T A +F L
Sbjct: 55 RTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRA 114
Query: 360 -----KLGDS---LCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVR 411
++ D L +AAR ++ LI + A +N D G +ALH A+ ++
Sbjct: 115 TDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAV 174
Query: 412 MLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLH 471
+L+ G + D ++ T L A G + ++L+ A+ + + P IA+
Sbjct: 175 VLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERM 234
Query: 472 YAGISRIL 479
+ I R+L
Sbjct: 235 HHDIVRLL 242
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 59/125 (47%), Gaps = 1/125 (0%)
Query: 364 SLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLI-DKGIDVDA 422
+L +AAR +RL+EA A N +D G T LH A V ++LI ++ D+DA
Sbjct: 60 ALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDA 119
Query: 423 KDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYAGISRILMHG 482
+ DG T L A + E L+ ADV A S + A ++ + +L+
Sbjct: 120 RMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKN 179
Query: 483 GATKD 487
GA KD
Sbjct: 180 GANKD 184
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 53/203 (26%), Positives = 75/203 (36%), Gaps = 21/203 (10%)
Query: 244 IHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEXXXXXXXXXXXXNGARPDIRN 303
+HLA R + K LL A+ N G T LH AV N A
Sbjct: 61 LHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDAR 120
Query: 304 ARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLGD 363
DG TPL + A L E M++ L+ A+ + GK+A
Sbjct: 121 MHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSA-------------------- 160
Query: 364 SLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAK 423
L AA V L++ GA + ++ T L A+ +G E ++L+D + D
Sbjct: 161 -LHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDIT 219
Query: 424 DEDGYTALHCAVESGHTDVTELL 446
D A E H D+ LL
Sbjct: 220 DHMDRLPRDIAQERMHHDIVRLL 242
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 29/62 (46%)
Query: 424 DEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYAGISRILMHGG 483
D G TALH A +D + L++ AD + + +P+ A G+ +IL+
Sbjct: 54 DRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNR 113
Query: 484 AT 485
AT
Sbjct: 114 AT 115
>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
pdb|1BI8|D Chain D, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
Length = 166
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 71/146 (48%), Gaps = 34/146 (23%)
Query: 355 LFDALKLGDSLCVAARKGEVRTMQRLI--------------------------------- 381
L + ++ GD L AA +G+V+ ++RL+
Sbjct: 2 LLEEVRAGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELL 61
Query: 382 EAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTD 441
+ GA+ N +D G + +H A+ G ++ +++L++ G DV+ D G +H AV+ GHT
Sbjct: 62 KQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTA 121
Query: 442 VTELLVKKGADVEARTSKNVSPMQIA 467
V L + +D+ R ++ ++P+++A
Sbjct: 122 VVSFLAAE-SDLHRRDARGLTPLELA 146
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 48/98 (48%), Gaps = 6/98 (6%)
Query: 231 ASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEXXXXXXXX 290
AS +TS P+H A R G L+ LK+L+ GA+VN G +HLAV+
Sbjct: 65 ASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVS 124
Query: 291 XXXXNGARPDI--RNARDGDTPLHITASLGYEQMVKLL 326
A D+ R+AR G TPL + G + +V +L
Sbjct: 125 FL---AAESDLHRRDAR-GLTPLELALQRGAQDLVDIL 158
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 54/107 (50%), Gaps = 2/107 (1%)
Query: 247 ALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEXXXXXXXXXXXXNGARPDIRNARD 306
A RG EV +LL + + +AL + G TAL + + GA P++++
Sbjct: 16 AARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELLKQGASPNVQDT-S 73
Query: 307 GDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHS 353
G +P+H A G+ +K+L++ GA+ + + +G +A + GH+
Sbjct: 74 GTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHT 120
>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d
Length = 156
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 54/88 (61%), Gaps = 1/88 (1%)
Query: 380 LIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGH 439
L++ GA+ N +D G + +H A+ G ++ +++L++ G DV+ D G +H AV+ GH
Sbjct: 54 LLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGH 113
Query: 440 TDVTELLVKKGADVEARTSKNVSPMQIA 467
T V L + +D+ R ++ ++P+++A
Sbjct: 114 TAVVSFLAAE-SDLHRRDARGLTPLELA 140
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 48/98 (48%), Gaps = 6/98 (6%)
Query: 231 ASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEXXXXXXXX 290
AS +TS P+H A R G L+ LK+L+ GA+VN G +HLAV+
Sbjct: 59 ASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVS 118
Query: 291 XXXXNGARPDI--RNARDGDTPLHITASLGYEQMVKLL 326
A D+ R+AR G TPL + G + +V +L
Sbjct: 119 FL---AAESDLHRRDAR-GLTPLELALQRGAQDLVDIL 152
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 54/107 (50%), Gaps = 2/107 (1%)
Query: 247 ALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEXXXXXXXXXXXXNGARPDIRNARD 306
A RG EV +LL + + +AL + G TAL + + GA P++++
Sbjct: 10 AARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELLKQGASPNVQDT-S 67
Query: 307 GDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHS 353
G +P+H A G+ +K+L++ GA+ + + +G +A + GH+
Sbjct: 68 GTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHT 114
>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures
Length = 168
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 71/148 (47%), Gaps = 34/148 (22%)
Query: 353 SRLFDALKLGDSLCVAARKGEVRTMQRLI------------------------------- 381
S L + + +GD L AA +G+V+ ++RL+
Sbjct: 2 SMLLEEVCVGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSPAVALE 61
Query: 382 --EAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGH 439
+ GA+ N +D G + +H A+ G ++ +++L++ G DV+A D G +H A+ GH
Sbjct: 62 LLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGH 121
Query: 440 TDVTELLVKKGADVEARTSKNVSPMQIA 467
+ V L + +D+ R + ++P+++A
Sbjct: 122 SSVVSFLAPE-SDLHHRDASGLTPLELA 148
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 31/51 (60%)
Query: 231 ASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAV 281
AS + S P+H A R G L+ LK+L+ GA+VNAL G+ +HLA+
Sbjct: 67 ASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAI 117
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 55/113 (48%), Gaps = 2/113 (1%)
Query: 247 ALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEXXXXXXXXXXXXNGARPDIRNARD 306
A RG EV +LL + + +AL + G TAL + + GA P++++A
Sbjct: 18 AARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSPAVALELLKQGASPNVQDA-S 75
Query: 307 GDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDAL 359
G +P+H A G+ +K+L++ GA+ + +G +A GHS + L
Sbjct: 76 GTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVVSFL 128
>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex
Length = 282
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 69/247 (27%), Positives = 99/247 (40%), Gaps = 29/247 (11%)
Query: 269 LTKDGNTALHLAVEXXXXXXXXXXXXNGARPDIRNARD--GDTPLHITASLGYEQMVKLL 326
+T+DG+TALHLAV A + + ++ G T LH+ A LG V+ L
Sbjct: 5 VTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKL 64
Query: 327 LQKGANKYIRNKSGKTAYDVAAE-----CG---------HSRLFDALKLGDSL-CV---- 367
GA + + G TA +A C H R L S C
Sbjct: 65 YAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTS 124
Query: 368 -------AARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDV 420
+ E R + + ++ G T LH A E+VR+L D G D+
Sbjct: 125 HAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADL 184
Query: 421 DAKDED-GYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYAGISRIL 479
+ + G T LH AVE+ V ELL+K GAD AR +P+ A ++R+L
Sbjct: 185 NKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLL 244
Query: 480 MHGGATK 486
GA +
Sbjct: 245 RAHGAPE 251
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Query: 243 PIHLALRGGHLEVLKLLLIKGANVNALTKD-GNTALHLAVEXXXXXXXXXXXXNGARPDI 301
P+H+A+ E+++LL GA++N G T LHLAVE GA P
Sbjct: 161 PLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTA 220
Query: 302 RNARDGDTPL 311
R G TPL
Sbjct: 221 R-MYGGRTPL 229
>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer
Complex
Length = 282
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 69/247 (27%), Positives = 99/247 (40%), Gaps = 29/247 (11%)
Query: 269 LTKDGNTALHLAVEXXXXXXXXXXXXNGARPDIRNARD--GDTPLHITASLGYEQMVKLL 326
+T+DG+TALHLAV A + + ++ G T LH+ A LG V+ L
Sbjct: 5 VTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKL 64
Query: 327 LQKGANKYIRNKSGKTAYDVAAE-----CG---------HSRLFDALKLGDSL-CV---- 367
GA + + G TA +A C H R L S C
Sbjct: 65 YAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTS 124
Query: 368 -------AARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDV 420
+ E R + + ++ G T LH A E+VR+L D G D+
Sbjct: 125 HAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADL 184
Query: 421 DAKDED-GYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYAGISRIL 479
+ + G T LH AVE+ V ELL+K GAD AR +P+ A ++R+L
Sbjct: 185 NKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLL 244
Query: 480 MHGGATK 486
GA +
Sbjct: 245 RAHGAPE 251
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Query: 243 PIHLALRGGHLEVLKLLLIKGANVNALTKD-GNTALHLAVEXXXXXXXXXXXXNGARPDI 301
P+H+A+ E+++LL GA++N G T LHLAVE GA P
Sbjct: 161 PLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTA 220
Query: 302 RNARDGDTPL 311
R G TPL
Sbjct: 221 R-MYGGRTPL 229
>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX
Length = 166
Score = 55.5 bits (132), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 53/88 (60%), Gaps = 1/88 (1%)
Query: 380 LIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGH 439
L++ GA+ N +D G + +H A+ G ++ +++L++ G DV+A D G +H A+ GH
Sbjct: 60 LLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGH 119
Query: 440 TDVTELLVKKGADVEARTSKNVSPMQIA 467
+ V L + +D+ R + ++P+++A
Sbjct: 120 SSVVSFLAPE-SDLHHRDASGLTPLELA 146
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 31/51 (60%)
Query: 231 ASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAV 281
AS + S P+H A R G L+ LK+L+ GA+VNAL G+ +HLA+
Sbjct: 65 ASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAI 115
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 55/113 (48%), Gaps = 2/113 (1%)
Query: 247 ALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEXXXXXXXXXXXXNGARPDIRNARD 306
A RG EV +LL + + +AL + G TAL + + GA P++++A
Sbjct: 16 AARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSPAVALELLKQGASPNVQDA-S 73
Query: 307 GDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDAL 359
G +P+H A G+ +K+L++ GA+ + +G +A GHS + L
Sbjct: 74 GTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVVSFL 126
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 56/117 (47%), Gaps = 6/117 (5%)
Query: 243 PIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEXXXXXXXXXXXXNGARPDI- 301
P+H A + G+L L+ L VN L K G+TAL+ A +P+I
Sbjct: 76 PLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEXLF---TQPNIE 132
Query: 302 --RNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLF 356
+ + GDT LH A GY +V+LLL KGA +RN K A+D A + L
Sbjct: 133 LNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDXATNAACASLL 189
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 52/91 (57%), Gaps = 1/91 (1%)
Query: 368 AARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDK-GIDVDAKDED 426
AA++G + ++ ++ +NG D G TAL+ A G ++V L + I+++ +++
Sbjct: 80 AAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEXLFTQPNIELNQQNKL 139
Query: 427 GYTALHCAVESGHTDVTELLVKKGADVEART 457
G TALH A G+ D+ +LL+ KGA + R
Sbjct: 140 GDTALHAAAWKGYADIVQLLLAKGARTDLRN 170
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 398 LHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTE-LLVKKGADVEAR 456
LH A+ +G + +R +D + V+ D+ G TAL+ A GH D+ E L + ++ +
Sbjct: 77 LHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEXLFTQPNIELNQQ 136
Query: 457 TSKNVSPMQIAECLHYAGISRILMHGGATKD 487
+ + A YA I ++L+ GA D
Sbjct: 137 NKLGDTALHAAAWKGYADIVQLLLAKGARTD 167
Score = 36.2 bits (82), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 59/154 (38%), Gaps = 23/154 (14%)
Query: 308 DTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSLCV 367
D PLH A G ++ L +K+G TA A GH + + L
Sbjct: 74 DNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEXL-------- 125
Query: 368 AARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDG 427
+ +N ++ G TALH A++KG ++V++L+ KG D ++ +
Sbjct: 126 ------------FTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEK 173
Query: 428 YTALHCAVESGHTDVTELLVKKGADVEARTSKNV 461
A A + LL KK RT N
Sbjct: 174 KLAFDXATNAA---CASLLKKKQGTDAVRTLSNA 204
>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
pdb|2QC9|B Chain B, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
Length = 210
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/191 (27%), Positives = 77/191 (40%), Gaps = 4/191 (2%)
Query: 170 DAQGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPXXXXXXXXXXXXXXXXXXR 229
D G+T LH+A R D + LLE D Q G + R
Sbjct: 19 DRTGETALHLAARYSRSDAAKRLLEASADAXIQDNMGRTPLHAAVSADAQGVFQILLRNR 78
Query: 230 KASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEXXXXXXX 289
+ P+ LA R +L+ L+ A+VNA+ G +ALH A
Sbjct: 79 ATDLDARMHDGTTPLILAARLALEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAA 138
Query: 290 XXXXXNGARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAE 349
NGA D++N ++ +TPL + A G + K+LL AN+ I + + D+A E
Sbjct: 139 VVLLKNGANKDMQNNKE-ETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQE 197
Query: 350 CGHS---RLFD 357
H RL D
Sbjct: 198 RMHHDIVRLLD 208
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 80/188 (42%), Gaps = 13/188 (6%)
Query: 305 RDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDAL----- 359
R G+T LH+ A K LL+ A+ I++ G+T A +F L
Sbjct: 20 RTGETALHLAARYSRSDAAKRLLEASADAXIQDNMGRTPLHAAVSADAQGVFQILLRNRA 79
Query: 360 -----KLGDS---LCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVR 411
++ D L +AAR ++ LI + A +N D G +ALH A+ ++
Sbjct: 80 TDLDARMHDGTTPLILAARLALEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAV 139
Query: 412 MLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLH 471
+L+ G + D ++ T L A G + ++L+ A+ + + P IA+
Sbjct: 140 VLLKNGANKDMQNNKEETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERM 199
Query: 472 YAGISRIL 479
+ I R+L
Sbjct: 200 HHDIVRLL 207
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 58/125 (46%), Gaps = 1/125 (0%)
Query: 364 SLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLI-DKGIDVDA 422
+L +AAR +RL+EA A +D G T LH A V ++L+ ++ D+DA
Sbjct: 25 ALHLAARYSRSDAAKRLLEASADAXIQDNMGRTPLHAAVSADAQGVFQILLRNRATDLDA 84
Query: 423 KDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYAGISRILMHG 482
+ DG T L A + E L+ ADV A S + A ++ + +L+
Sbjct: 85 RMHDGTTPLILAARLALEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKN 144
Query: 483 GATKD 487
GA KD
Sbjct: 145 GANKD 149
Score = 33.1 bits (74), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 52/203 (25%), Positives = 74/203 (36%), Gaps = 21/203 (10%)
Query: 244 IHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEXXXXXXXXXXXXNGARPDIRN 303
+HLA R + K LL A+ G T LH AV N A
Sbjct: 26 LHLAARYSRSDAAKRLLEASADAXIQDNMGRTPLHAAVSADAQGVFQILLRNRATDLDAR 85
Query: 304 ARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLGD 363
DG TPL + A L E M++ L+ A+ + GK+A
Sbjct: 86 MHDGTTPLILAARLALEGMLEDLINSHADVNAVDDLGKSA-------------------- 125
Query: 364 SLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAK 423
L AA V L++ GA + ++ T L A+ +G E ++L+D + D
Sbjct: 126 -LHWAAAVNNVDAAVVLLKNGANKDMQNNKEETPLFLAAREGSYETAKVLLDHFANRDIT 184
Query: 424 DEDGYTALHCAVESGHTDVTELL 446
D A E H D+ LL
Sbjct: 185 DHMDRLPRDIAQERMHHDIVRLL 207
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 29/62 (46%)
Query: 424 DEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYAGISRILMHGG 483
D G TALH A +D + L++ AD + + +P+ A G+ +IL+
Sbjct: 19 DRTGETALHLAARYSRSDAAKRLLEASADAXIQDNMGRTPLHAAVSADAQGVFQILLRNR 78
Query: 484 AT 485
AT
Sbjct: 79 AT 80
>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats
Length = 276
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/144 (31%), Positives = 71/144 (49%), Gaps = 19/144 (13%)
Query: 306 DGDTPLHITASLGYEQMVKLLLQKGANKYIR-NKSGKTAYDVAAECGHSRLFDALKLGDS 364
+G+T LH + S +V+ LL G K + N++G + + A LK D
Sbjct: 110 NGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTA-------LATLKTQD- 161
Query: 365 LCVAARKGEVRTMQRLIEAGAAINGKDLH-GWTALHRASFKGKIEVVRMLIDKGIDVDAK 423
++ T+ +L G IN K G TAL A G+++VV+ L+ DV+ +
Sbjct: 162 --------DIETVLQLFRLGN-INAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQ 212
Query: 424 DEDGYTALHCAVESGHTDVTELLV 447
D+DG TAL CA E GH ++ LL+
Sbjct: 213 DDDGSTALMCACEHGHKEIAGLLL 236
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 81/187 (43%), Gaps = 21/187 (11%)
Query: 266 VNALTKDGNTALHLAVEXXXXXXXXXXXXNGARPDIRNARDGDTPLHITA--SLGYEQMV 323
VN +GNTALH +V +G + R G +P+ +TA +L + +
Sbjct: 104 VNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDI 163
Query: 324 KLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSLCVAARKGEVRTMQRLIEA 383
+ +LQ I K A++ G + L +A G V ++ L+
Sbjct: 164 ETVLQLFRLGNINAK--------ASQAGQTALM----------LAVSHGRVDVVKALLAC 205
Query: 384 GAAINGKDLHGWTALHRASFKGKIEVVRMLID-KGIDVDAKDEDGYTALHCAVESGHTDV 442
A +N +D G TAL A G E+ +L+ D+ D DG TAL A+++G +++
Sbjct: 206 EADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCDISLTDRDGSTALMVALDAGQSEI 265
Query: 443 TELLVKK 449
+L +
Sbjct: 266 ASMLYSR 272
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 64/166 (38%), Gaps = 5/166 (3%)
Query: 169 ADAQGQTLLHIAIAQRRPDIVQLLLEFG-PDVESQGRCGCS----TPXXXXXXXXXXXXX 223
AD+ G T LH +++ +VQ LL+ G V+ Q R G S T
Sbjct: 107 ADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDIETV 166
Query: 224 XXXXXRKASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEX 283
++ + + LA+ G ++V+K LL A+VN DG+TAL A E
Sbjct: 167 LQLFRLGNINAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEH 226
Query: 284 XXXXXXXXXXXNGARPDIRNARDGDTPLHITASLGYEQMVKLLLQK 329
+ RDG T L + G ++ +L +
Sbjct: 227 GHKEIAGLLLAVPSCDISLTDRDGSTALMVALDAGQSEIASMLYSR 272
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 50/102 (49%), Gaps = 9/102 (8%)
Query: 377 MQRLIEAGAA-INGKDLHGW-----TALHRASFKGKIEVVRMLIDKGIDVDAK-DEDGYT 429
+Q+L+++G ++ ++ G+ TAL + IE V L G +++AK + G T
Sbjct: 127 VQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDIETVLQLFRLG-NINAKASQAGQT 185
Query: 430 ALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLH 471
AL AV G DV + L+ ADV + + + A C H
Sbjct: 186 ALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCA-CEH 226
>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|B Chain B, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|C Chain C, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
Length = 239
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 67/231 (29%), Positives = 99/231 (42%), Gaps = 30/231 (12%)
Query: 254 EVLKLLLIKGANVNA-LTKDGNTALHLAVEXXXXXXXXXXXXNGARPDIRNARD--GDTP 310
+V+ LL +GA +NA + K G T+LHLA GA N++D G TP
Sbjct: 31 QVISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADA---NSQDNTGRTP 87
Query: 311 LHITASLGYEQMVKLLLQ-KGANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSLCVAA 369
LH + + ++LL+ + N R G T L +AA
Sbjct: 88 LHAAVAADAMGVFQILLRNRATNLNARMHDGTT---------------------PLILAA 126
Query: 370 RKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYT 429
R ++ LI A A IN D G TALH A+ E V +L+ + DA+D+ T
Sbjct: 127 RLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDET 186
Query: 430 ALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIA-ECLHYAGISRIL 479
L A G + ++ L+ A+ E + P +A E LH+ I R+L
Sbjct: 187 PLFLAAREGSYEASKALLDNFANREITDHMDRLPRDVASERLHH-DIVRLL 236
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 80/193 (41%), Gaps = 8/193 (4%)
Query: 170 DAQGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPXXXXXXXXXXXXXXXXXXR 229
D G+T LH+A R D + LL+ G D SQ G TP
Sbjct: 48 DKTGETSLHLAARFARADAAKRLLDAGADANSQDNTG-RTPLHAAVAADAMGVFQILLRN 106
Query: 230 KAS--TERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEXXXXX 287
+A+ R T P+ LA R +++ L+ A++NA G TALH A
Sbjct: 107 RATNLNARMHDGTT-PLILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTE 165
Query: 288 XXXXXXXNGARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVA 347
+ A D ++ +D +TPL + A G + K LL AN+ I + + DVA
Sbjct: 166 AVNILLMHHANRDAQDDKD-ETPLFLAAREGSYEASKALLDNFANREITDHMDRLPRDVA 224
Query: 348 AECGHS---RLFD 357
+E H RL D
Sbjct: 225 SERLHHDIVRLLD 237
Score = 36.2 bits (82), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 52/110 (47%), Gaps = 1/110 (0%)
Query: 380 LIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLI-DKGIDVDAKDEDGYTALHCAVESG 438
L++AGA N +D G T LH A + V ++L+ ++ +++A+ DG T L A
Sbjct: 70 LLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLA 129
Query: 439 HTDVTELLVKKGADVEARTSKNVSPMQIAECLHYAGISRILMHGGATKDG 488
+ E L+ AD+ A + + + A ++ IL+ A +D
Sbjct: 130 IEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDA 179
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 408 EVVRMLIDKGIDVDAK-DEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQI 466
+V+ L+ +G +++A D+ G T+LH A D + L+ GAD ++ + +P+
Sbjct: 31 QVISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHA 90
Query: 467 AECLHYAGISRILMHGGATK 486
A G+ +IL+ AT
Sbjct: 91 AVAADAMGVFQILLRNRATN 110
>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein
Length = 201
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 82/163 (50%), Gaps = 21/163 (12%)
Query: 306 DGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKL---- 361
+G+TPL+I ++ K L+ +GA+ ++N + Y A G + + A L
Sbjct: 38 EGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQGRTEIL-AYMLKHAT 96
Query: 362 ----------GDSLCVAARKGEVRTMQRLIEAG-AAINGKDLHGWTAL-----HRASFKG 405
G++L AA KG + ++ L+E G I+ ++ G+TAL R +
Sbjct: 97 PDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQL 156
Query: 406 KIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVK 448
++V++L++ G D KD G TA+ A + G+T+++++L +
Sbjct: 157 YQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKILAQ 199
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/207 (24%), Positives = 91/207 (43%), Gaps = 37/207 (17%)
Query: 152 LREVLERSDPAWNPADSADAQGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPX 211
++E+L+ D + D D +G T L+IA+ +I + L++ G D+ Q S
Sbjct: 21 VKEILQ--DTTY-QVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQN--SISDSP 75
Query: 212 XXXXXXXXXXXXXXXXXRKASTERSETSTWGPIHL--ALRGGHLEVLKLLLIKG-ANVNA 268
+ A+ + ++ + +G L A GH++ +KLLL G +++
Sbjct: 76 YLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDF 135
Query: 269 LTKDGNTALHLAVEXXXXXXXXXXXXNGARPDIRNARDGDTPLHITASLGYEQMVKLLLQ 328
G TAL AV R+G+ Y+ +VKLL++
Sbjct: 136 QNDFGYTALIEAV---------------------GLREGNQL--------YQDIVKLLME 166
Query: 329 KGANKYIRNKSGKTAYDVAAECGHSRL 355
GA++ I++ SG+TA D A + G++ +
Sbjct: 167 NGADQSIKDNSGRTAMDYANQKGYTEI 193
Score = 36.2 bits (82), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 60/129 (46%), Gaps = 7/129 (5%)
Query: 365 LCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGI-DVDAK 423
L +A ++ + LI+ GA IN ++ + A +G+ E++ ++ D++
Sbjct: 43 LNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKH 102
Query: 424 DEDGYTALHCAVESGHTDVTELLVKKG-ADVEARTSKNVSPMQIAECLH-----YAGISR 477
+ G AL A E GH D +LL++ G D++ + + + A L Y I +
Sbjct: 103 NRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVK 162
Query: 478 ILMHGGATK 486
+LM GA +
Sbjct: 163 LLMENGADQ 171
>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein
pdb|2RFM|B Chain B, Structure Of A Thermophilic Ankyrin Repeat Protein
Length = 192
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 62/120 (51%)
Query: 365 LCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKD 424
L VA G + +L+E + KD+ G TAL A ++ + L+ KG +V+ KD
Sbjct: 39 LMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKD 98
Query: 425 EDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYAGISRILMHGGA 484
G T L ++ G+++++ L++ GA+V R + +P+ +A + I + L+ GA
Sbjct: 99 FSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGA 158
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 69/169 (40%), Gaps = 55/169 (32%)
Query: 247 ALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEXXXXXXXXXXXXNGARPDIRNARD 306
A++ L + + LL KG+NVN TKD +
Sbjct: 75 AVKNNRLGIAEKLLSKGSNVN--TKDFS-------------------------------- 100
Query: 307 GDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSLC 366
G TPL + GY +M LL+ GAN RN G+T L
Sbjct: 101 GKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETP---------------------LI 139
Query: 367 VAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLID 415
VA++ G +++L+E GA I+ +DL G TA A G+ EV+++ +
Sbjct: 140 VASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQEVIKIFTE 188
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/164 (29%), Positives = 76/164 (46%), Gaps = 18/164 (10%)
Query: 301 IRNARD--GDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDA 358
+RN RD TPL + LG E + L++ ++ G TA A + ++RL A
Sbjct: 27 LRNYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVK--NNRLGIA 84
Query: 359 LKL---GDSLCVAARKGEVRTMQRLI-----------EAGAAINGKDLHGWTALHRASFK 404
KL G ++ G+ M +I E GA +N ++L G T L AS
Sbjct: 85 EKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKY 144
Query: 405 GKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVK 448
G+ E+V+ L++ G D+ A+D G TA A G +V ++ +
Sbjct: 145 GRSEIVKKLLELGADISARDLTGLTAEASARIFGRQEVIKIFTE 188
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 47/98 (47%)
Query: 388 NGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLV 447
N +D + T L A G + L++ ++ KD +G TAL AV++ + E L+
Sbjct: 29 NYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLL 88
Query: 448 KKGADVEARTSKNVSPMQIAECLHYAGISRILMHGGAT 485
KG++V + +P+ + Y+ +S L+ GA
Sbjct: 89 SKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGAN 126
>pdb|2VGE|A Chain A, Crystal Structure Of The C-Terminal Region Of Human Iaspp
Length = 229
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 45/90 (50%)
Query: 368 AARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDG 427
AA GE+ +Q+ ++ + + G TALH A +V LI G +V++ D G
Sbjct: 28 AALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSHG 87
Query: 428 YTALHCAVESGHTDVTELLVKKGADVEART 457
+T LHCA T + LV+ GA + A T
Sbjct: 88 WTPLHCAASCNDTVICMALVQHGAAIFATT 117
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 43/84 (51%)
Query: 401 ASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKN 460
A+ G++EVV+ + + D +E+G TALH A+ + + + L+ GA+V + S
Sbjct: 28 AALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSHG 87
Query: 461 VSPMQIAECLHYAGISRILMHGGA 484
+P+ A + I L+ GA
Sbjct: 88 WTPLHCAASCNDTVICMALVQHGA 111
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 50/136 (36%), Gaps = 6/136 (4%)
Query: 244 IHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEXXXXXXXXXXXXNGARPDIRN 303
+H A+ G + ++ L+ GANVN+ G T LH A +GA
Sbjct: 58 LHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATT 117
Query: 304 ARDGDTPLHITASL--GYEQMVKLLLQKGANKYIRNKSGKTA-YDVAAECGHSRLFDALK 360
DG T GY L + + N A +D +AE G F +
Sbjct: 118 LSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDYSAEFGDELSF---R 174
Query: 361 LGDSLCVAARKGEVRT 376
G+S+ V R G T
Sbjct: 175 EGESVTVLRRDGPEET 190
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 6/87 (6%)
Query: 387 INGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELL 446
+N D HG++ LH A +G+ VV MLI +G ++ + T LH A GH D+ + L
Sbjct: 32 LNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKL 91
Query: 447 VKKGADVEARTSKNVSPMQIAECLHYA 473
++ AD+ A P LHYA
Sbjct: 92 LQYKADINAVNEHGNVP------LHYA 112
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 50/105 (47%), Gaps = 1/105 (0%)
Query: 243 PIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEXXXXXXXXXXXXNGARPDIR 302
P+H A R G V+++L+++GA +N + + +T LHLA A +
Sbjct: 42 PLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAV 101
Query: 303 NARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVA 347
N G+ PLH G +Q+ + L+ GA I NK G+ D A
Sbjct: 102 NEH-GNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKA 145
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 42/84 (50%)
Query: 368 AARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDG 427
A R+G ++ LI GA IN + T LH A+ G ++V+ L+ D++A +E G
Sbjct: 46 ACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHG 105
Query: 428 YTALHCAVESGHTDVTELLVKKGA 451
LH A G V E LV GA
Sbjct: 106 NVPLHYACFWGQDQVAEDLVANGA 129
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 48/111 (43%), Gaps = 21/111 (18%)
Query: 307 GDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSLC 366
G +PLH G +V++L+ +GA + N+ T +AA GH +
Sbjct: 39 GFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDI----------- 87
Query: 367 VAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKG 417
+Q+L++ A IN + HG LH A F G+ +V L+ G
Sbjct: 88 ----------VQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANG 128
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 57/133 (42%), Gaps = 3/133 (2%)
Query: 244 IHLALRGGHLEVLKLLLIKGAN-VNALTKDGNTALHLAVEXXXXXXXXXXXXNGARPDIR 302
I R G+ ++L L N +N G + LH A GAR ++
Sbjct: 9 IFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVM 68
Query: 303 NARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLG 362
N R DTPLH+ AS G+ +V+ LLQ A+ N+ G A G ++ + L
Sbjct: 69 N-RGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVAN 127
Query: 363 DSLC-VAARKGEV 374
+L + + GE+
Sbjct: 128 GALVSICNKYGEM 140
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
Query: 404 KGKIEVVRMLIDKG-IDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVS 462
+G VR+ +D D++ D+ G++ LH A G + V E+L+ +GA + + +
Sbjct: 15 EGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDT 74
Query: 463 PMQIAECLHYAGISRILMHGGATKDGIQQ 491
P+ +A + I + L+ A + + +
Sbjct: 75 PLHLAASHGHRDIVQKLLQYKADINAVNE 103
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 6/87 (6%)
Query: 387 INGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELL 446
+N D HG++ LH A +G+ VV MLI +G ++ + T LH A GH D+ + L
Sbjct: 27 LNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKL 86
Query: 447 VKKGADVEARTSKNVSPMQIAECLHYA 473
++ AD+ A P LHYA
Sbjct: 87 LQYKADINAVNEHGNVP------LHYA 107
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 50/105 (47%), Gaps = 1/105 (0%)
Query: 243 PIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEXXXXXXXXXXXXNGARPDIR 302
P+H A R G V+++L+++GA +N + + +T LHLA A +
Sbjct: 37 PLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAV 96
Query: 303 NARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVA 347
N G+ PLH G +Q+ + L+ GA I NK G+ D A
Sbjct: 97 NEH-GNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKA 140
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 42/84 (50%)
Query: 368 AARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDG 427
A R+G ++ LI GA IN + T LH A+ G ++V+ L+ D++A +E G
Sbjct: 41 ACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHG 100
Query: 428 YTALHCAVESGHTDVTELLVKKGA 451
LH A G V E LV GA
Sbjct: 101 NVPLHYACFWGQDQVAEDLVANGA 124
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 48/111 (43%), Gaps = 21/111 (18%)
Query: 307 GDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSLC 366
G +PLH G +V++L+ +GA + N+ T +AA GH +
Sbjct: 34 GFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDI----------- 82
Query: 367 VAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKG 417
+Q+L++ A IN + HG LH A F G+ +V L+ G
Sbjct: 83 ----------VQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANG 123
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 57/133 (42%), Gaps = 3/133 (2%)
Query: 244 IHLALRGGHLEVLKLLLIKGAN-VNALTKDGNTALHLAVEXXXXXXXXXXXXNGARPDIR 302
I R G+ ++L L N +N G + LH A GAR ++
Sbjct: 4 IFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVM 63
Query: 303 NARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLG 362
N R DTPLH+ AS G+ +V+ LLQ A+ N+ G A G ++ + L
Sbjct: 64 N-RGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVAN 122
Query: 363 DSLC-VAARKGEV 374
+L + + GE+
Sbjct: 123 GALVSICNKYGEM 135
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
Query: 404 KGKIEVVRMLIDKG-IDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVS 462
+G VR+ +D D++ D+ G++ LH A G + V E+L+ +GA + + +
Sbjct: 10 EGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDT 69
Query: 463 PMQIAECLHYAGISRILMHGGATKDGIQQ 491
P+ +A + I + L+ A + + +
Sbjct: 70 PLHLAASHGHRDIVQKLLQYKADINAVNE 98
>pdb|3DEO|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
pdb|3DEP|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
Length = 183
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 57/101 (56%), Gaps = 2/101 (1%)
Query: 368 AARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKD-ED 426
AARK + + + +L+E ++ D +G TAL + G + VR+L + G D+D +D
Sbjct: 51 AARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRG 109
Query: 427 GYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIA 467
G TALH A +V E LV+ GAD+E + ++ +++A
Sbjct: 110 GLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELA 150
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 47/93 (50%), Gaps = 11/93 (11%)
Query: 345 DVAAECGHSRLFDALKLGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHG-WTALHRASF 403
D E G + L LG CV + L EAGA ++ +D+ G TALH A+
Sbjct: 70 DAVDENGRTALLFVAGLGSDKCV----------RLLAEAGADLDHRDMRGGLTALHMAAG 119
Query: 404 KGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVE 436
+ EVV L++ G D++ +DE G TAL A E
Sbjct: 120 YVRPEVVEALVELGADIEVEDERGLTALELARE 152
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 46/90 (51%)
Query: 260 LIKGANVNALTKDGNTALHLAVEXXXXXXXXXXXXNGARPDIRNARDGDTPLHITASLGY 319
L++ +V+A+ ++G TAL GA D R+ R G T LH+ A
Sbjct: 63 LLEDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVR 122
Query: 320 EQMVKLLLQKGANKYIRNKSGKTAYDVAAE 349
++V+ L++ GA+ + ++ G TA ++A E
Sbjct: 123 PEVVEALVELGADIEVEDERGLTALELARE 152
Score = 33.1 bits (74), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 22/36 (61%)
Query: 173 GQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCS 208
G T LH+A RP++V+ L+E G D+E + G +
Sbjct: 110 GLTALHMAAGYVRPEVVEALVELGADIEVEDERGLT 145
>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain
Length = 232
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 78/158 (49%), Gaps = 22/158 (13%)
Query: 365 LCVAARKGEVRTMQRLIE-AGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDV--- 420
L +AA++ +V+ + +L++ G ++ + G TALH A+ +E +L++ ++
Sbjct: 7 LLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFE 66
Query: 421 --DAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNV-------------SPMQ 465
++ +G TALH AV + + ++ L+ +GA V AR + +V P+
Sbjct: 67 PMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLS 126
Query: 466 IAECLHYAGISRILMHGGA---TKDGIQQTNLRQVSIQ 500
A C+ I R+L+ GA +D + T L + +Q
Sbjct: 127 FAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQ 164
Score = 36.6 bits (83), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 64/166 (38%), Gaps = 16/166 (9%)
Query: 241 W-GPIHLALRGGHLEVL-KLLLIKGANVNALTKDGNTALHLAVEXXXXXXXXXXXXNG-- 296
W P+ LA + ++ L KLL +G V+ G TALH+A
Sbjct: 3 WESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPE 62
Query: 297 --ARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSR 354
P +G T LHI +V+ LL +GA+ R H R
Sbjct: 63 LVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSAR---------ATGSVFHYR 113
Query: 355 LFDALKLGDS-LCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALH 399
+ + G+ L AA G ++ LIE GA I +D G T LH
Sbjct: 114 PHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLH 159
Score = 35.0 bits (79), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 64/146 (43%), Gaps = 30/146 (20%)
Query: 320 EQMVKLLLQKGANKYIRNKSGKTAYDVAA------------ECGHSRLFDAL--KLGD-- 363
+ + KLL +G + R G+TA +AA E +F+ + +L +
Sbjct: 17 QALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQ 76
Query: 364 -SLCVAARKGEVRTMQRLIEAGAAINGKD-------------LHGWTALHRASFKGKIEV 409
+L +A V ++ L+ GA+++ + +G L A+ G E+
Sbjct: 77 TALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEI 136
Query: 410 VRMLIDKGIDVDAKDEDGYTALHCAV 435
VR+LI+ G D+ A+D G T LH +
Sbjct: 137 VRLLIEHGADIRAQDSLGNTVLHILI 162
Score = 32.7 bits (73), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 54/133 (40%), Gaps = 31/133 (23%)
Query: 155 VLERSDP--AWNPADSADAQGQTLLHIAIAQRRPDIVQLLLEFGPDVESQ--GRCGCSTP 210
VL + P + P S +GQT LHIA+ + ++V+ LL G V ++ G P
Sbjct: 55 VLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRP 114
Query: 211 XXXXXXXXXXXXXXXXXXRKASTERSETSTWG--PIHLALRGGHLEVLKLLLIKGANVNA 268
+G P+ A G E+++LL+ GA++ A
Sbjct: 115 -------------------------HNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRA 149
Query: 269 LTKDGNTALHLAV 281
GNT LH+ +
Sbjct: 150 QDSLGNTVLHILI 162
Score = 32.3 bits (72), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 36/87 (41%), Gaps = 12/87 (13%)
Query: 272 DGNTALHLAVEXXXXXXXXXXXXNGARPDIRNA------------RDGDTPLHITASLGY 319
+G TALH+AV GA R G+ PL A +G
Sbjct: 74 EGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGS 133
Query: 320 EQMVKLLLQKGANKYIRNKSGKTAYDV 346
E++V+LL++ GA+ ++ G T +
Sbjct: 134 EEIVRLLIEHGADIRAQDSLGNTVLHI 160
>pdb|3UI2|A Chain A, Crystal Structure Of The Cpsrp54 Tail Bound To Cpsrp43
Length = 244
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 57/101 (56%), Gaps = 2/101 (1%)
Query: 368 AARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKD-ED 426
AARK + + + +L+E ++ D +G TAL + G + VR+L + G D+D +D
Sbjct: 52 AARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRG 110
Query: 427 GYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIA 467
G TALH A +V E LV+ GAD+E + ++ +++A
Sbjct: 111 GLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELA 151
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 46/144 (31%), Positives = 65/144 (45%), Gaps = 14/144 (9%)
Query: 345 DVAAECGHSRLFDALKLGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHG-WTALHRASF 403
D E G + L LG CV + L EAGA ++ +D+ G TALH A+
Sbjct: 71 DAVDENGRTALLFVAGLGSDKCV----------RLLAEAGADLDHRDMRGGLTALHMAAG 120
Query: 404 KGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSP 463
+ EVV L++ G D++ +DE G TAL A E T ++ G + NV
Sbjct: 121 YVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKVINVLE 180
Query: 464 MQIAECLHYAGISRILMHGGATKD 487
Q+ E YA + I+ G KD
Sbjct: 181 GQVFE---YAEVDEIVEKRGKGKD 201
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 54/114 (47%), Gaps = 3/114 (2%)
Query: 236 SETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEXXXXXXXXXXXXN 295
SE T P A R + L LL + +V+A+ ++G TAL
Sbjct: 43 SEYET--PWWTAARKADEQALSQLL-EDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEA 99
Query: 296 GARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAE 349
GA D R+ R G T LH+ A ++V+ L++ GA+ + ++ G TA ++A E
Sbjct: 100 GADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELARE 153
Score = 33.5 bits (75), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 22/37 (59%)
Query: 173 GQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCST 209
G T LH+A RP++V+ L+E G D+E + G +
Sbjct: 111 GLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTA 147
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 33/62 (53%), Gaps = 5/62 (8%)
Query: 395 WTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVE 454
WTA +A + + ++L D+ DVDA DE+G TAL G LL + GAD++
Sbjct: 50 WTAARKADEQA---LSQLLEDR--DVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLD 104
Query: 455 AR 456
R
Sbjct: 105 HR 106
>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q)
pdb|1MX4|B Chain B, Structure Of P18ink4c (F82q)
Length = 168
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 56/114 (49%), Gaps = 1/114 (0%)
Query: 372 GEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTAL 431
G +RL+ GA + KD G+ +H A+ G+++ ++ L++ DV+ +D +G L
Sbjct: 48 GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGQLDTLQTLLEFQADVNIEDNEGNLPL 107
Query: 432 HCAVESGHTDVTELLVKKGA-DVEARTSKNVSPMQIAECLHYAGISRILMHGGA 484
H A + GH V E LVK A +V R K + +A + ++ GA
Sbjct: 108 HLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161
Score = 35.8 bits (81), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 44/103 (42%)
Query: 229 RKASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEXXXXXX 288
R A+ + + + + IH A R G L+ L+ LL A+VN +GN LHLA +
Sbjct: 59 RGANPDLKDRTGFAVIHDAARAGQLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRV 118
Query: 289 XXXXXXNGARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGA 331
+ A GDT + G ++V L+ GA
Sbjct: 119 VEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 49/108 (45%), Gaps = 16/108 (14%)
Query: 296 GARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRL 355
GA PD+++ R G +H A G ++ LL+ A+ I + G +AA+ GH R+
Sbjct: 60 GANPDLKD-RTGFAVIHDAARAGQLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRV 118
Query: 356 FDAL------------KLGDSLCVAAR---KGEVRTMQRLIEAGAAIN 388
+ L GD+ C AR + EV ++ + AG A N
Sbjct: 119 VEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGAGGATN 166
>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex With
V-1
Length = 123
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 46/85 (54%)
Query: 368 AARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDG 427
A + G++ ++ + G +N G LH A+ G++E++ L+ KG D++A D+
Sbjct: 14 ALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHH 73
Query: 428 YTALHCAVESGHTDVTELLVKKGAD 452
T L AV GH +LL+ KGAD
Sbjct: 74 ITPLLSAVYEGHVSCVKLLLSKGAD 98
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 36/67 (53%)
Query: 365 LCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKD 424
L AA G++ ++ L+ GA IN D H T L A ++G + V++L+ KG D K
Sbjct: 44 LHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKG 103
Query: 425 EDGYTAL 431
DG TA
Sbjct: 104 PDGLTAF 110
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 43/82 (52%)
Query: 405 GKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPM 464
G ++ V+ + KG DV+ E G LH A + G ++ E L+ KGAD+ A +++P+
Sbjct: 18 GDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPL 77
Query: 465 QIAECLHYAGISRILMHGGATK 486
A + ++L+ GA K
Sbjct: 78 LSAVYEGHVSCVKLLLSKGADK 99
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 45/103 (43%), Gaps = 34/103 (33%)
Query: 243 PIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEXXXXXXXXXXXXNGARPDIR 302
P+H A G LE+L+ LL+KGA++NA PD
Sbjct: 43 PLHYAADCGQLEILEFLLLKGADINA------------------------------PDKH 72
Query: 303 NARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYD 345
+ TPL G+ VKLLL KGA+K ++ G TA++
Sbjct: 73 HI----TPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFE 111
>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures
pdb|2MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, Minimized Average
Structure
pdb|2KXP|C Chain C, Solution Nmr Structure Of V-1 Bound To Capping Protein
(Cp)
Length = 118
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 51/98 (52%)
Query: 368 AARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDG 427
A + G++ ++ + G +N G LH A+ G++E++ L+ KG D++A D+
Sbjct: 9 ALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHH 68
Query: 428 YTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQ 465
T L AV GH +LL+ KGAD + ++ ++
Sbjct: 69 ITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTALE 106
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 43/82 (52%)
Query: 405 GKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPM 464
G ++ V+ + KG DV+ E G LH A + G ++ E L+ KGAD+ A +++P+
Sbjct: 13 GDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPL 72
Query: 465 QIAECLHYAGISRILMHGGATK 486
A + ++L+ GA K
Sbjct: 73 LSAVYEGHVSCVKLLLSKGADK 94
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 44/103 (42%), Gaps = 34/103 (33%)
Query: 243 PIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEXXXXXXXXXXXXNGARPDIR 302
P+H A G LE+L+ LL+KGA++NA PD
Sbjct: 38 PLHYAADCGQLEILEFLLLKGADINA------------------------------PDKH 67
Query: 303 NARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYD 345
+ TPL G+ VKLLL KGA+K ++ G TA +
Sbjct: 68 HI----TPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTALE 106
>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n)
pdb|1MX6|B Chain B, Structure Of P18ink4c (F92n)
Length = 168
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 55/114 (48%), Gaps = 1/114 (0%)
Query: 372 GEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTAL 431
G +RL+ GA + KD G+ +H A+ G ++ ++ L++ DV+ +D +G L
Sbjct: 48 GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLENQADVNIEDNEGNLPL 107
Query: 432 HCAVESGHTDVTELLVKKGA-DVEARTSKNVSPMQIAECLHYAGISRILMHGGA 484
H A + GH V E LVK A +V R K + +A + ++ GA
Sbjct: 108 HLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161
Score = 37.0 bits (84), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 50/108 (46%), Gaps = 16/108 (14%)
Query: 296 GARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRL 355
GA PD+++ R G +H A G+ ++ LL+ A+ I + G +AA+ GH R+
Sbjct: 60 GANPDLKD-RTGFAVIHDAARAGFLDTLQTLLENQADVNIEDNEGNLPLHLAAKEGHLRV 118
Query: 356 FDAL------------KLGDSLCVAAR---KGEVRTMQRLIEAGAAIN 388
+ L GD+ C AR + EV ++ + AG A N
Sbjct: 119 VEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGAGGATN 166
Score = 36.2 bits (82), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 44/103 (42%)
Query: 229 RKASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEXXXXXX 288
R A+ + + + + IH A R G L+ L+ LL A+VN +GN LHLA +
Sbjct: 59 RGANPDLKDRTGFAVIHDAARAGFLDTLQTLLENQADVNIEDNEGNLPLHLAAKEGHLRV 118
Query: 289 XXXXXXNGARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGA 331
+ A GDT + G ++V L+ GA
Sbjct: 119 VEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161
>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures
pdb|1G3N|B Chain B, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|F Chain F, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 168
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 55/114 (48%), Gaps = 1/114 (0%)
Query: 372 GEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTAL 431
G +RL+ GA + KD G+ +H A+ G ++ ++ L++ DV+ +D +G L
Sbjct: 48 GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPL 107
Query: 432 HCAVESGHTDVTELLVKKGA-DVEARTSKNVSPMQIAECLHYAGISRILMHGGA 484
H A + GH V E LVK A +V R K + +A + ++ GA
Sbjct: 108 HLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161
Score = 36.2 bits (82), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 50/108 (46%), Gaps = 16/108 (14%)
Query: 296 GARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRL 355
GA PD+++ R G +H A G+ ++ LL+ A+ I + G +AA+ GH R+
Sbjct: 60 GANPDLKD-RTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRV 118
Query: 356 FDAL------------KLGDSLCVAAR---KGEVRTMQRLIEAGAAIN 388
+ L GD+ C AR + EV ++ + AG A N
Sbjct: 119 VEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGAGGATN 166
Score = 35.4 bits (80), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 44/103 (42%)
Query: 229 RKASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEXXXXXX 288
R A+ + + + + IH A R G L+ L+ LL A+VN +GN LHLA +
Sbjct: 59 RGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRV 118
Query: 289 XXXXXXNGARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGA 331
+ A GDT + G ++V L+ GA
Sbjct: 119 VEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161
>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6)
pdb|1IHB|B Chain B, Crystal Structure Of P18-Ink4c(Ink6)
Length = 162
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 55/114 (48%), Gaps = 1/114 (0%)
Query: 372 GEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTAL 431
G +RL+ GA + KD G+ +H A+ G ++ ++ L++ DV+ +D +G L
Sbjct: 48 GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPL 107
Query: 432 HCAVESGHTDVTELLVKKGA-DVEARTSKNVSPMQIAECLHYAGISRILMHGGA 484
H A + GH V E LVK A +V R K + +A + ++ GA
Sbjct: 108 HLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161
Score = 35.8 bits (81), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 44/103 (42%)
Query: 229 RKASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEXXXXXX 288
R A+ + + + + IH A R G L+ L+ LL A+VN +GN LHLA +
Sbjct: 59 RGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRV 118
Query: 289 XXXXXXNGARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGA 331
+ A GDT + G ++V L+ GA
Sbjct: 119 VEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161
Score = 32.7 bits (73), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 296 GARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRL 355
GA PD+++ R G +H A G+ ++ LL+ A+ I + G +AA+ GH R+
Sbjct: 60 GANPDLKD-RTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRV 118
Query: 356 FDAL 359
+ L
Sbjct: 119 VEFL 122
>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
pdb|3JUE|B Chain B, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
Length = 368
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 47/96 (48%), Gaps = 6/96 (6%)
Query: 376 TMQRLIEAGAAIN----GKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTAL 431
TM + GA +N G+D T L +A+ + L+ G +V+ D G L
Sbjct: 215 TMADALAHGADVNWVNGGQD--NATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPL 272
Query: 432 HCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIA 467
H A GHT + L +K+GAD+ AR S+ P+ IA
Sbjct: 273 HHATILGHTGLACLFLKRGADLGARDSEGRDPLTIA 308
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 36/67 (53%)
Query: 380 LIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGH 439
L++ GA +N D G LH A+ G + + + +G D+ A+D +G L A+E+ +
Sbjct: 254 LLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETAN 313
Query: 440 TDVTELL 446
D+ LL
Sbjct: 314 ADIVTLL 320
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 50/117 (42%), Gaps = 3/117 (2%)
Query: 260 LIKGANVNALT--KDGNTALHLAVEXXXXXXXXXXXXNGARPDIRNARDGDTPLHITASL 317
L GA+VN + +D T L A NGA + ++ G PLH L
Sbjct: 220 LAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSA-GRGPLHHATIL 278
Query: 318 GYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSLCVAARKGEV 374
G+ + L L++GA+ R+ G+ +A E ++ + L+L A +G+
Sbjct: 279 GHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQA 335
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 30/52 (57%)
Query: 231 ASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVE 282
A+ +++++ GP+H A GH + L L +GA++ A +G L +A+E
Sbjct: 259 ANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAME 310
>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
pdb|4F1P|B Chain B, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
Length = 368
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 47/96 (48%), Gaps = 6/96 (6%)
Query: 376 TMQRLIEAGAAIN----GKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTAL 431
TM + GA +N G+D T L +A+ + L+ G +V+ D G L
Sbjct: 215 TMADALAHGADVNWVNGGQD--NATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPL 272
Query: 432 HCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIA 467
H A GHT + L +K+GAD+ AR S+ P+ IA
Sbjct: 273 HHATILGHTGLACLFLKRGADLGARDSEGRDPLTIA 308
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 36/67 (53%)
Query: 380 LIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGH 439
L++ GA +N D G LH A+ G + + + +G D+ A+D +G L A+E+ +
Sbjct: 254 LLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETAN 313
Query: 440 TDVTELL 446
D+ LL
Sbjct: 314 ADIVTLL 320
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 50/117 (42%), Gaps = 3/117 (2%)
Query: 260 LIKGANVNALT--KDGNTALHLAVEXXXXXXXXXXXXNGARPDIRNARDGDTPLHITASL 317
L GA+VN + +D T L A NGA + ++ G PLH L
Sbjct: 220 LAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSA-GRGPLHHATIL 278
Query: 318 GYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSLCVAARKGEV 374
G+ + L L++GA+ R+ G+ +A E ++ + L+L A +G+
Sbjct: 279 GHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQA 335
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 30/52 (57%)
Query: 231 ASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVE 282
A+ +++++ GP+H A GH + L L +GA++ A +G L +A+E
Sbjct: 259 ANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAME 310
>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
pdb|3T9K|B Chain B, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
Length = 390
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 47/96 (48%), Gaps = 6/96 (6%)
Query: 376 TMQRLIEAGAAIN----GKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTAL 431
TM + GA +N G+D T L +A+ + L+ G +V+ D G L
Sbjct: 215 TMADALAHGADVNWVNGGQD--NATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPL 272
Query: 432 HCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIA 467
H A GHT + L +K+GAD+ AR S+ P+ IA
Sbjct: 273 HHATILGHTGLACLFLKRGADLGARDSEGRDPLTIA 308
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 36/67 (53%)
Query: 380 LIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGH 439
L++ GA +N D G LH A+ G + + + +G D+ A+D +G L A+E+ +
Sbjct: 254 LLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETAN 313
Query: 440 TDVTELL 446
D+ LL
Sbjct: 314 ADIVTLL 320
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 50/117 (42%), Gaps = 3/117 (2%)
Query: 260 LIKGANVNALT--KDGNTALHLAVEXXXXXXXXXXXXNGARPDIRNARDGDTPLHITASL 317
L GA+VN + +D T L A NGA + ++ G PLH L
Sbjct: 220 LAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSA-GRGPLHHATIL 278
Query: 318 GYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALKLGDSLCVAARKGEV 374
G+ + L L++GA+ R+ G+ +A E ++ + L+L A +G+
Sbjct: 279 GHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQA 335
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 30/52 (57%)
Query: 231 ASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVE 282
A+ +++++ GP+H A GH + L L +GA++ A +G L +A+E
Sbjct: 259 ANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAME 310
>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c
pdb|1MX2|B Chain B, Structure Of F71n Mutant Of P18ink4c
Length = 168
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 54/114 (47%), Gaps = 1/114 (0%)
Query: 372 GEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTAL 431
G +RL+ GA + KD G +H A+ G ++ ++ L++ DV+ +D +G L
Sbjct: 48 GNPEIARRLLLRGANPDLKDRTGNAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPL 107
Query: 432 HCAVESGHTDVTELLVKKGA-DVEARTSKNVSPMQIAECLHYAGISRILMHGGA 484
H A + GH V E LVK A +V R K + +A + ++ GA
Sbjct: 108 HLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 55/111 (49%), Gaps = 2/111 (1%)
Query: 251 GHLEVLKLLLIKGANVNALTKDGNTALHLAVEXXXXXXXXXXXXNGARPDIRNARDGDTP 310
G+ E+ + LL++GAN + + GN +H A A +I + +G+ P
Sbjct: 48 GNPEIARRLLLRGANPDLKDRTGNAVIHDAARAGFLDTLQTLLEFQADVNIED-NEGNLP 106
Query: 311 LHITASLGYEQMVKLLLQKGA-NKYIRNKSGKTAYDVAAECGHSRLFDALK 360
LH+ A G+ ++V+ L++ A N RN G TA D+A G + + ++
Sbjct: 107 LHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQ 157
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 51/108 (47%), Gaps = 16/108 (14%)
Query: 296 GARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRL 355
GA PD+++ R G+ +H A G+ ++ LL+ A+ I + G +AA+ GH R+
Sbjct: 60 GANPDLKD-RTGNAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRV 118
Query: 356 FDAL------------KLGDSLCVAAR---KGEVRTMQRLIEAGAAIN 388
+ L GD+ C AR + EV ++ + AG A N
Sbjct: 119 VEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGAGGATN 166
Score = 33.1 bits (74), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 43/103 (41%)
Query: 229 RKASTERSETSTWGPIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEXXXXXX 288
R A+ + + + IH A R G L+ L+ LL A+VN +GN LHLA +
Sbjct: 59 RGANPDLKDRTGNAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRV 118
Query: 289 XXXXXXNGARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGA 331
+ A GDT + G ++V L+ GA
Sbjct: 119 VEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161
>pdb|3LJN|A Chain A, Ankyrin Repeat Protein From Leishmania Major
Length = 364
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/235 (20%), Positives = 92/235 (39%), Gaps = 18/235 (7%)
Query: 244 IHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEXXXXXXXXXXXXNGARPDIRN 303
IH+A R G + ++ L+ G + + G TALHLA + G ++ +
Sbjct: 24 IHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVG---EVHS 80
Query: 304 ARDGDTPLHITASLGYEQMVKLLLQKGANK------YIRNKSGKTAYDVAAECGHSRLFD 357
G P+H+ +V L++ + + + ++ + H +
Sbjct: 81 LWHGQKPIHLAVXANKTDLVVALVEGAKERGQXPESLLNECDEREVNEIGSHVKHCKGQT 140
Query: 358 ALKLGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLID-- 415
AL CV + ++ L++ GA+ KD T L RA E + + D
Sbjct: 141 AL----HWCVGLGPEYLEXIKILVQLGASPTAKDKADETPLXRAXEFRNREALDLXXDTV 196
Query: 416 ---KGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIA 467
+ +D ++ G + LH A+ DV V+ G DV +++ P+ ++
Sbjct: 197 PSKSSLRLDYANKQGNSHLHWAILINWEDVAXRFVEXGIDVNXEDNEHTVPLYLS 251
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 46/86 (53%), Gaps = 2/86 (2%)
Query: 363 DSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDA 422
+ + VAARKG+ ++RLIE G + ++ G TALH A G ++ + L G +V +
Sbjct: 22 EKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVG-EVHS 80
Query: 423 KDEDGYTALHCAVESGHTDVTELLVK 448
G +H AV + TD+ LV+
Sbjct: 81 L-WHGQKPIHLAVXANKTDLVVALVE 105
>pdb|1YMP|A Chain A, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
pdb|1YMP|B Chain B, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
Length = 135
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 57/118 (48%), Gaps = 4/118 (3%)
Query: 243 PIHLALRGGHLEVLKLLLIKGANVNALTKDGNTALHLAVEXXXXXXXXXXXXNGARPDIR 302
P+ LA R +L+ L+ A+VNA+ G +ALH A NGA D++
Sbjct: 18 PLILAARLALEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQ 77
Query: 303 NARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHS---RLFD 357
N ++ +TPL + A G + K+LL AN+ I + + D+A E H RL D
Sbjct: 78 NNKE-ETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLD 134
Score = 32.0 bits (71), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 53/115 (46%)
Query: 365 LCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKD 424
L +AAR ++ LI + A +N D G +ALH A+ ++ +L+ G + D ++
Sbjct: 19 LILAARLALEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQN 78
Query: 425 EDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYAGISRIL 479
T L A G + ++L+ A+ + + P IA+ + I R+L
Sbjct: 79 NKEETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLL 133
>pdb|3KEA|A Chain A, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
pdb|3KEA|B Chain B, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
Length = 285
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 44/83 (53%), Gaps = 2/83 (2%)
Query: 368 AARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDG 427
A VR + L+ AGA N L LH+A+ ++V++L+ G+D D+ G
Sbjct: 38 AIADNNVRLVCTLLNAGALKNL--LENEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKG 95
Query: 428 YTALHCAVESGHTDVTELLVKKG 450
TAL+ AV+SG+ +L VKK
Sbjct: 96 NTALYYAVDSGNXQTVKLFVKKN 118
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 38/170 (22%), Positives = 67/170 (39%), Gaps = 33/170 (19%)
Query: 301 IRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSRLFDALK 360
++N + + PLH A+L ++VK+LL G + + G TA A + G+ +
Sbjct: 56 LKNLLENEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNXQ------ 109
Query: 361 LGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGW-TALHRASFKGKIEVVRMLIDK--- 416
K V+ RL G GW T+ + A + +V + +
Sbjct: 110 --------TVKLFVKKNWRLXFYGKT-------GWKTSFYHAVXLNDVSIVSYFLSEIPS 154
Query: 417 GIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQI 466
D+ + +H +++GH D LL+ D T+ N S + I
Sbjct: 155 TFDLAI----LLSCIHITIKNGHVDXXILLL----DYXTSTNTNNSLLFI 196
>pdb|1BI7|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structure Of The Cdk6-P16ink4a Tumor Suppressor
Complex
Length = 156
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 64/141 (45%), Gaps = 5/141 (3%)
Query: 363 DSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDA 422
D L AA +G V ++ L+EAGA N + +G + + G V +L+ G + +
Sbjct: 14 DWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPI-QVMMMGSARVAELLLLHGAEPNC 72
Query: 423 KDEDGYT-ALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYAGISRILMH 481
D T +H A G D +L + GA ++ R + P+ +AE L + ++R L
Sbjct: 73 ADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLR- 131
Query: 482 GGATKDGIQQTNLRQVSIQFG 502
A G + +N ++ G
Sbjct: 132 --AAAGGTRGSNHARIDAAEG 150
Score = 36.6 bits (83), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 45/102 (44%), Gaps = 1/102 (0%)
Query: 251 GHLEVLKLLLIKGANVNALTKDGNTALHLAVEXXXXXXXXXXXXNGARPDIRNARDGDTP 310
G +E ++ LL GAN NA G + + + +GA P+ + P
Sbjct: 23 GRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRP 81
Query: 311 LHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGH 352
+H A G+ + +L + GA +R+ G+ D+A E GH
Sbjct: 82 VHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGH 123
>pdb|1DC2|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a, 20
Structures
pdb|1A5E|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a, 18
Structures
pdb|2A5E|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a,
Restrained Minimized Mean Structure
Length = 156
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 65/145 (44%), Gaps = 5/145 (3%)
Query: 363 DSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDA 422
D L AA +G V ++ L+EAGA N + +G + + G V +L+ G + +
Sbjct: 14 DWLATAAARGRVEEVRALLEAGALPNAPNSYGRRPI-QVMMMGSARVAELLLLHGAEPNC 72
Query: 423 KDEDGYT-ALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYAGISRILMH 481
D T +H A G D +L + GA ++ R + P+ +AE L + ++R L
Sbjct: 73 ADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLR- 131
Query: 482 GGATKDGIQQTNLRQVSIQFGNGKV 506
A G + +N ++ G +
Sbjct: 132 --AAAGGTRGSNHARIDAAEGPSDI 154
Score = 32.7 bits (73), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 44/102 (43%), Gaps = 1/102 (0%)
Query: 251 GHLEVLKLLLIKGANVNALTKDGNTALHLAVEXXXXXXXXXXXXNGARPDIRNARDGDTP 310
G +E ++ LL GA NA G + + + +GA P+ + P
Sbjct: 23 GRVEEVRALLEAGALPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRP 81
Query: 311 LHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGH 352
+H A G+ + +L + GA +R+ G+ D+A E GH
Sbjct: 82 VHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGH 123
>pdb|1D9S|A Chain A, Tumor Suppressor P15(Ink4b) Structure By Comparative
Modeling And Nmr Data
Length = 136
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 56/116 (48%), Gaps = 2/116 (1%)
Query: 365 LCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKD 424
L AA +G+V T+++L+EAGA N + G + + G +V +L+ G + + D
Sbjct: 16 LATAAARGQVETVRQLLEAGADPNALNRFGRRPI-QVMMMGSAQVAELLLLHGAEPNCAD 74
Query: 425 EDGYT-ALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHYAGISRIL 479
T +H A G D +L + GA ++ + P+ +AE + I+R L
Sbjct: 75 PATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYL 130
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 46/102 (45%), Gaps = 1/102 (0%)
Query: 251 GHLEVLKLLLIKGANVNALTKDGNTALHLAVEXXXXXXXXXXXXNGARPDIRNARDGDTP 310
G +E ++ LL GA+ NAL + G + + + +GA P+ + P
Sbjct: 23 GQVETVRQLLEAGADPNALNRFGRRPIQVMM-MGSAQVAELLLLHGAEPNCADPATLTRP 81
Query: 311 LHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGH 352
+H A G+ + +L + GA + + G+ D+A E GH
Sbjct: 82 VHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGH 123
>pdb|2NYJ|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv1
pdb|2PNN|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv1
Length = 273
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 62/241 (25%), Positives = 93/241 (38%), Gaps = 48/241 (19%)
Query: 117 FTTRKKQVFIDSGIKIMFVGSPVLV---LLVKDGEMDD---LREVLERSDP--AWNPADS 168
F R K+ DS K G L+ L + +G+ D L +V ++D + A
Sbjct: 35 FLQRSKKRLTDSEFKDPETGKTCLLKAXLNLHNGQNDTIALLLDVARKTDSLKQFVNASY 94
Query: 169 ADA--QGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGRCGCSTPXXXXXXXXXXXXXXXX 226
D+ +GQT LHIAI +R +V LL+E G DV++
Sbjct: 95 TDSYYKGQTALHIAIERRNXTLVTLLVENGADVQAAAN--------------------GD 134
Query: 227 XXRKASTERSETSTWGPIHLALRGGHLEVLKLLLIKG---ANVNALTKDGNTALHLAVEX 283
+K P+ LA L ++K LL A+++A GNT LH VE
Sbjct: 135 FFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEV 194
Query: 284 XXXXXXXXXXXN---------GAR--PDIR----NARDGDTPLHITASLGYEQMVKLLLQ 328
GA+ P ++ R G TPL + AS G ++ +LQ
Sbjct: 195 ADNTVDNTKFVTSXYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQ 254
Query: 329 K 329
+
Sbjct: 255 R 255
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 51/118 (43%), Gaps = 28/118 (23%)
Query: 394 GWTALHRASFK---GKIEVVRMLID--KGID-----VDAKDEDGY----TALHCAVESGH 439
G T L +A G+ + + +L+D + D V+A D Y TALH A+E +
Sbjct: 54 GKTCLLKAXLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRN 113
Query: 440 TDVTELLVKKGADVEARTSKNVS--------------PMQIAECLHYAGISRILMHGG 483
+ LLV+ GADV+A + + P+ +A C + I + L+
Sbjct: 114 XTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNS 171
Score = 28.9 bits (63), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 67/179 (37%), Gaps = 37/179 (20%)
Query: 266 VNALTKD----GNTALHLAVEXXXXXXXXXXXXNGARPDIRNARDGD------------- 308
VNA D G TALH+A+E NGA D++ A +GD
Sbjct: 90 VNASYTDSYYKGQTALHIAIERRNXTLVTLLVENGA--DVQAAANGDFFKKTKGRPGFYF 147
Query: 309 --TPLHITASLGYEQMVKLLLQKG---ANKYIRNKSGKTAYDVAAECGHSRL----FDAL 359
PL + A +VK LLQ A+ R+ G T E + + F
Sbjct: 148 GELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTS 207
Query: 360 KLGDSLCVAARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGI 418
+ L + A+ ++ + + G T L A+ GKI V+ ++ + I
Sbjct: 208 XYNEILILGAKLHPTLKLEEIT---------NRKGLTPLALAASSGKIGVLAYILQREI 257
>pdb|3JXI|A Chain A, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXI|B Chain B, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXI|C Chain C, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXI|D Chain D, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXJ|A Chain A, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXJ|B Chain B, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
Length = 260
Score = 37.0 bits (84), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 25/41 (60%)
Query: 164 NPADSADAQGQTLLHIAIAQRRPDIVQLLLEFGPDVESQGR 204
+P +GQT LHIAI +R V+LL+E G DV +Q R
Sbjct: 84 SPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQAR 124
Score = 36.2 bits (82), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 38/84 (45%), Gaps = 19/84 (22%)
Query: 427 GYTALHCAVESGHTDVTELLVKKGADVEARTSKNVS--------------PMQIAECLHY 472
G TALH A+E ELLV+KGADV A+ P+ +A C +
Sbjct: 93 GQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQ 152
Query: 473 AGISRILMHGGATKDGIQQTNLRQ 496
I L T++G +Q +LR+
Sbjct: 153 PHIVHYL-----TENGHKQADLRR 171
>pdb|1SW6|A Chain A, S. Cerevisiae Swi6 Ankyrin-Repeat Fragment
pdb|1SW6|B Chain B, S. Cerevisiae Swi6 Ankyrin-Repeat Fragment
Length = 327
Score = 37.0 bits (84), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 300 DIRNARD--GDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAA 348
++ NA+D GDT L+I A LG +V LL GA+ +I NKSG D A
Sbjct: 274 NMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGA 324
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 40/181 (22%), Positives = 73/181 (40%), Gaps = 38/181 (20%)
Query: 307 GDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTA----------YDVAA-ECGHSRL 355
G+TPLH S+ ++VK L++ G+N+ + G++ YD E L
Sbjct: 131 GNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYL 190
Query: 356 FDALKLGDSL----------------CVAARKGE--------VRTMQRLIEAGAAINGKD 391
+ L L DS+ C AA K V+ R I++G
Sbjct: 191 YPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESK 250
Query: 392 LHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGA 451
+ + S +++ ++ + ++A+D +G T L+ A G+ + + L+ GA
Sbjct: 251 PNDKNGERKDSILENLDLKWIIANM---LNAQDSNGDTCLNIAARLGNISIVDALLDYGA 307
Query: 452 D 452
D
Sbjct: 308 D 308
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 5/57 (8%)
Query: 145 KDGEMDDLREVLERSDPAW---NPADSADAQGQTLLHIAIAQRRPDIVQLLLEFGPD 198
K+GE D +LE D W N ++ D+ G T L+IA IV LL++G D
Sbjct: 254 KNGERKD--SILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGAD 308
>pdb|2RR3|A Chain A, Solution Structure Of The Complex Between Human Vap-A Msp
Domain And Human Osbp Ffat Motif
Length = 130
Score = 35.8 bits (81), Expect = 0.062, Method: Composition-based stats.
Identities = 30/108 (27%), Positives = 53/108 (49%), Gaps = 14/108 (12%)
Query: 27 LTLRNVMHTMPVAFRIQPTNKARYTVKPQSGIISPLATLSVEIAYHLPPGSVLPDSFPHC 86
L LRN V F+++ T RY V+P SGII P +T++V + L P P+
Sbjct: 32 LKLRNP-SDRKVCFKVKTTAPRRYCVRPNSGIIDPGSTVTVSVM--LQPFDYDPNE--KS 86
Query: 87 DDSFLLHSVVVPGAGIKDATSTLDSVPSDWFTTRKKQVFIDSGIKIMF 134
F++ ++ P TS +++V W + ++ +DS ++ +F
Sbjct: 87 KHKFMVQTIFAP-----PNTSDMEAV---WKEAKPDEL-MDSKLRCVF 125
>pdb|2B0O|E Chain E, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|F Chain F, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|G Chain G, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|H Chain H, Crystal Structure Of Uplc1 Gap Domain
Length = 301
Score = 35.8 bits (81), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 41/83 (49%)
Query: 369 ARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGY 428
A + + + +I+ G ++ K G TALH A+ + + +++L+ V +E G
Sbjct: 201 ANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGE 260
Query: 429 TALHCAVESGHTDVTELLVKKGA 451
TAL A + H + ELL + A
Sbjct: 261 TALDIARKKHHKECEELLEQAQA 283
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 36/80 (45%)
Query: 400 RASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSK 459
+ + + + +V +I G +DAK DG TALH A D +LL+K A V
Sbjct: 199 KVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEA 258
Query: 460 NVSPMQIAECLHYAGISRIL 479
+ + IA H+ +L
Sbjct: 259 GETALDIARKKHHKECEELL 278
Score = 33.5 bits (75), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 295 NGARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSR 354
NG D + A DG+T LH A +KLLL+ A N++G+TA D+A + H
Sbjct: 215 NGGHLDAK-AADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKE 273
Query: 355 LFDALK 360
+ L+
Sbjct: 274 CEELLE 279
>pdb|3IKK|A Chain A, Crystal Structure Analysis Of Msp Domain
pdb|3IKK|B Chain B, Crystal Structure Analysis Of Msp Domain
Length = 127
Score = 35.4 bits (80), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 62/134 (46%), Gaps = 14/134 (10%)
Query: 1 MDRLVSLEPSNLVAIRIEPGQKCSGELTLRNVMHTMPVAFRIQPTNKARYTVKPQSGIIS 60
+++++SLEP + + R + L L N V F+++ T RY V+P SGII
Sbjct: 6 VEQVLSLEPQHELKFRGPFTDVVTTNLKLGNPTDRN-VCFKVKTTAPRRYCVRPNSGIID 64
Query: 61 PLATLSVEIAYHLPPGSVLPDSFPHCDDSFLLHSVVVPGAGIKDATSTLDSVPSDWFTTR 120
A S+ ++ L P P+ F++ S+ P TS +++V W
Sbjct: 65 --AGASINVSVMLQPFDYDPNE--KSKHKFMVQSMFAPT-----DTSDMEAV---W-KEA 111
Query: 121 KKQVFIDSGIKIMF 134
K + +DS ++ +F
Sbjct: 112 KPEDLMDSKLRCVF 125
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 41/83 (49%)
Query: 369 ARKGEVRTMQRLIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGY 428
A + + + +I+ G ++ K G TALH A+ + + +++L+ V +E G
Sbjct: 182 ANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGE 241
Query: 429 TALHCAVESGHTDVTELLVKKGA 451
TAL A + H + ELL + A
Sbjct: 242 TALDIARKKHHKECEELLEQAQA 264
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 37/85 (43%)
Query: 400 RASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGHTDVTELLVKKGADVEARTSK 459
+ + + + +V +I G +DAK DG TALH A D +LL+K A V
Sbjct: 180 KVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEA 239
Query: 460 NVSPMQIAECLHYAGISRILMHGGA 484
+ + IA H+ +L A
Sbjct: 240 GETALDIARKKHHKECEELLEQAQA 264
Score = 32.7 bits (73), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 295 NGARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGANKYIRNKSGKTAYDVAAECGHSR 354
NG D + A DG+T LH A +KLLL+ A N++G+TA D+A + H
Sbjct: 196 NGGHLDAK-AADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKE 254
Query: 355 LFDALK 360
+ L+
Sbjct: 255 CEELLE 260
>pdb|2F37|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Human
Trpv2
pdb|2F37|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of Human
Trpv2
Length = 251
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 56/217 (25%), Positives = 84/217 (38%), Gaps = 52/217 (23%)
Query: 141 VLLVKDGEMDDLREVLERSDPAWNPADSADAQ-------GQTLLHIAIAQRRPDIVQLLL 193
VL +KDG + +L+ + NP +AQ G + LHIAI +R V+LL+
Sbjct: 56 VLNLKDGVNACILPLLQIDRDSGNPQPLVNAQCTDDYYRGHSALHIAIEKRSLQCVKLLV 115
Query: 194 EFGPDVESQGRCGCSTPXXXXXXXXXXXXXXXXXXRKASTERSETSTWG--PIHLALRGG 251
E G +V ++ CG R + +G P+ LA
Sbjct: 116 ENGANVHARA-CG----------------------RFFQKGQGTCFYFGELPLSLAACTK 152
Query: 252 HLEVLKLLLI---KGANVNALTKDGNTALHLAVEXXXXXXXXXXXXN---------GAR- 298
+V+ LL + A++ A GNT LH V GAR
Sbjct: 153 QWDVVSYLLENPHQPASLQATDSQGNTVLHALVXISDNSAENIALVTSXYDGLLQAGARL 212
Query: 299 ------PDIRNARDGDTPLHITASLGYEQMVKLLLQK 329
DIRN +D TPL + A G ++ + +LQ+
Sbjct: 213 CPTVQLEDIRNLQDL-TPLKLAAKEGKIEIFRHILQR 248
Score = 32.0 bits (71), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 23/46 (50%)
Query: 427 GYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHY 472
G++ALH A+E +LLV+ GA+V AR C ++
Sbjct: 95 GHSALHIAIEKRSLQCVKLLVENGANVHARACGRFFQKGQGTCFYF 140
>pdb|1DCQ|A Chain A, Crystal Structure Of The Arf-Gap Domain And Ankyrin
Repeats Of Papbeta
Length = 278
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 41/94 (43%), Gaps = 4/94 (4%)
Query: 244 IHLALRG---GHLEVLKLLLIKGANVNALTKDGNTALHLAVEXXXXXXXXXXXXNGARPD 300
+HLA+R L ++ L+ N++ T G+TALH A +
Sbjct: 173 LHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIE 232
Query: 301 IRNARDGDTPLHITASLGYEQMVKLLLQKGANKY 334
I N G+TPL I L +E +LL Q + ++
Sbjct: 233 IAN-ESGETPLDIAKRLKHEHCEELLTQALSGRF 265
Score = 32.7 bits (73), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 38/88 (43%), Gaps = 4/88 (4%)
Query: 275 TALHLAV---EXXXXXXXXXXXXNGARPDIRNARDGDTPLHITASLGYEQMVKLLLQKGA 331
TALHLAV + N D + + G T LH + +KLLL+ A
Sbjct: 171 TALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGK-GSTALHYCCLTDNAECLKLLLRGKA 229
Query: 332 NKYIRNKSGKTAYDVAAECGHSRLFDAL 359
+ I N+SG+T D+A H + L
Sbjct: 230 SIEIANESGETPLDIAKRLKHEHCEELL 257
Score = 28.5 bits (62), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 30/69 (43%)
Query: 380 LIEAGAAINGKDLHGWTALHRASFKGKIEVVRMLIDKGIDVDAKDEDGYTALHCAVESGH 439
L++ ++ + G TALH E +++L+ ++ +E G T L A H
Sbjct: 191 LVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKH 250
Query: 440 TDVTELLVK 448
ELL +
Sbjct: 251 EHCEELLTQ 259
>pdb|4DX1|A Chain A, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
pdb|4DX1|B Chain B, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
pdb|4DX2|A Chain A, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
pdb|4DX2|B Chain B, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
Length = 259
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 7/74 (9%)
Query: 138 PVLVLLVKDGEMDDLREVLERSDPAWN-------PADSADAQGQTLLHIAIAQRRPDIVQ 190
P +L + +G D + +L+ ++ N P +GQT LHIAI +R V+
Sbjct: 49 PKALLNLSNGRNDTIPVLLDIAERTGNMREFINSPFRDIYYRGQTALHIAIERRCKHYVE 108
Query: 191 LLLEFGPDVESQGR 204
LL+ G DV +Q R
Sbjct: 109 LLVAQGADVHAQAR 122
Score = 32.0 bits (71), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 19/30 (63%)
Query: 427 GYTALHCAVESGHTDVTELLVKKGADVEAR 456
G TALH A+E ELLV +GADV A+
Sbjct: 91 GQTALHIAIERRCKHYVELLVAQGADVHAQ 120
>pdb|2ETC|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
pdb|2ETC|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
Length = 274
Score = 33.1 bits (74), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Query: 418 IDVDAKDE--DGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHY 472
++ DE G++ALH A+E +LLV+ GADV R C ++
Sbjct: 92 VNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYF 148
Score = 32.3 bits (72), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 8/73 (10%)
Query: 141 VLLVKDGEMDDLREVLERSDPAWNPADSADAQ-------GQTLLHIAIAQRRPDIVQLLL 193
VL ++DG + +L+ + NP +AQ G + LHIAI +R V+LL+
Sbjct: 64 VLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLV 123
Query: 194 EFGPDVESQGRCG 206
E G DV + CG
Sbjct: 124 ENGADVHLRA-CG 135
>pdb|2ETA|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of The
Trpv2
pdb|2ETA|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of The
Trpv2
pdb|2ETB|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
Length = 256
Score = 33.1 bits (74), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Query: 418 IDVDAKDE--DGYTALHCAVESGHTDVTELLVKKGADVEARTSKNVSPMQIAECLHY 472
++ DE G++ALH A+E +LLV+ GADV R C ++
Sbjct: 79 VNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYF 135
Score = 32.7 bits (73), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 8/73 (10%)
Query: 141 VLLVKDGEMDDLREVLERSDPAWNPADSADAQ-------GQTLLHIAIAQRRPDIVQLLL 193
VL ++DG + +L+ + NP +AQ G + LHIAI +R V+LL+
Sbjct: 51 VLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLV 110
Query: 194 EFGPDVESQGRCG 206
E G DV + CG
Sbjct: 111 ENGADVHLRA-CG 122
>pdb|2CRI|A Chain A, Solution Structure Of The Msp Domain Of Mouse Vamp-
Associated Proteina
Length = 147
Score = 32.7 bits (73), Expect = 0.49, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Query: 38 VAFRIQPTNKARYTVKPQSGIISPLATLSVEIAYHLPPGSVLPDSFPHCDDSFLLHSVVV 97
V F+++ T RY V+P SGII P + ++V + L P P+ F++ ++
Sbjct: 47 VCFKVKTTAPRRYCVRPNSGIIDPGSIVTVSVM--LQPFDYDPNE--KSKHKFMVQTIFA 102
Query: 98 P 98
P
Sbjct: 103 P 103
>pdb|1Z9O|A Chain A, 1.9 Angstrom Crystal Structure Of The Rat Vap-a Msp
Homology Domain In Complex With The Rat Orp1 Ffat Motif
pdb|1Z9O|B Chain B, 1.9 Angstrom Crystal Structure Of The Rat Vap-a Msp
Homology Domain In Complex With The Rat Orp1 Ffat Motif
pdb|1Z9O|C Chain C, 1.9 Angstrom Crystal Structure Of The Rat Vap-a Msp
Homology Domain In Complex With The Rat Orp1 Ffat Motif
pdb|1Z9O|D Chain D, 1.9 Angstrom Crystal Structure Of The Rat Vap-a Msp
Homology Domain In Complex With The Rat Orp1 Ffat Motif
pdb|1Z9O|E Chain E, 1.9 Angstrom Crystal Structure Of The Rat Vap-a Msp
Homology Domain In Complex With The Rat Orp1 Ffat Motif
pdb|1Z9O|F Chain F, 1.9 Angstrom Crystal Structure Of The Rat Vap-a Msp
Homology Domain In Complex With The Rat Orp1 Ffat Motif
Length = 128
Score = 32.7 bits (73), Expect = 0.57, Method: Composition-based stats.
Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Query: 38 VAFRIQPTNKARYTVKPQSGIISPLATLSVEIAYHLPPGSVLPDSFPHCDDSFLLHSVVV 97
V F+++ T RY V+P SG+I P + ++V + L P P+ F++ ++
Sbjct: 43 VCFKVKTTAPRRYCVRPNSGVIDPGSIVTVSVM--LQPFDYDPNE--KSKHKFMVQTIFA 98
Query: 98 P 98
P
Sbjct: 99 P 99
>pdb|3T8K|A Chain A, The Crystal Structure Of A Functionally Unknown Protein
Lebu_0176 From Leptotrichia Buccalis C-1013-B
pdb|3T8K|B Chain B, The Crystal Structure Of A Functionally Unknown Protein
Lebu_0176 From Leptotrichia Buccalis C-1013-B
Length = 186
Score = 32.3 bits (72), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 23/101 (22%), Positives = 44/101 (43%), Gaps = 9/101 (8%)
Query: 364 SLCVAARKGEVRTMQRLIEAGAAINGKDLHG---WTALHRASFKGKIEVVRMLIDKGIDV 420
++ AA G L E G L + L + + + ++ LI+KG D+
Sbjct: 9 TVSAAAXLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISXFLINKGADI 68
Query: 421 DAKDEDGYTALHCAVESGHTDVT------ELLVKKGADVEA 455
++ ++G T + G D+T ++ ++KGAD+ A
Sbjct: 69 KSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITA 109
>pdb|1Z9L|A Chain A, 1.7 Angstrom Crystal Structure Of The Rat Vap-A Msp
Homology Domain
Length = 128
Score = 32.3 bits (72), Expect = 0.71, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 21/32 (65%)
Query: 38 VAFRIQPTNKARYTVKPQSGIISPLATLSVEI 69
V F+++ T RY V+P SG+I P + ++V +
Sbjct: 43 VCFKVKTTAPRRYCVRPNSGVIDPGSIVTVSV 74
>pdb|2IUS|A Chain A, E. Coli Ftsk Motor Domain
pdb|2IUS|B Chain B, E. Coli Ftsk Motor Domain
pdb|2IUS|C Chain C, E. Coli Ftsk Motor Domain
pdb|2IUS|D Chain D, E. Coli Ftsk Motor Domain
pdb|2IUS|E Chain E, E. Coli Ftsk Motor Domain
pdb|2IUS|F Chain F, E. Coli Ftsk Motor Domain
Length = 512
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 6/37 (16%)
Query: 160 DPAWNPADSADAQGQTLLHIAIAQRRPDIVQLLLEFG 196
DP W P DS DAQ L ++ P IV L+ EF
Sbjct: 277 DPYWKPGDSMDAQHPVL------KKEPYIVVLVDEFA 307
>pdb|1EIW|A Chain A, Solution Structure Of Hypothetical Protein Mth538 From
Methanobacterium Thermoautotrophicum
Length = 111
Score = 30.0 bits (66), Expect = 3.0, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Query: 142 LLVKDGEMDDLR---EVLERSDPAWNPADSADAQGQTLLHIAIAQRRPDIV 189
L + +GE++D R E LE+S W PA DA +L RR +I+
Sbjct: 7 LYITEGEVEDYRVFLERLEQSGLEWRPATPEDADAVIVLAGLWGTRRDEIL 57
>pdb|1WIC|A Chain A, Solution Structure Of The Msp Domain Of Riken Cdna
6030424e15
Length = 152
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Query: 17 IEPGQKCSGELTLRNVMHTMPVAFRIQPTNKARYTVKPQSGIISPLATLSVEIAYH 72
IE G+K + + L NV + VAF+++ T +Y VKP + P A++ + ++ H
Sbjct: 32 IESGEKKT-LIVLTNVTKNI-VAFKVRTTAPEKYRVKPSNSSCDPGASIDIIVSPH 85
>pdb|3QAC|A Chain A, Structure Of Amaranth 11s Proglobulin Seed Storage
Protein From Amaranthus Hypochondriacus L
Length = 465
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 38/90 (42%), Gaps = 11/90 (12%)
Query: 1 MDRLVSLEPSNLVAIRIEPGQKCSGELTLRNVMHTMPVAFRIQPTNKARYTVKPQSGIIS 60
+DRL +LEP+N + E L V + FR + R T++P G++
Sbjct: 16 IDRLTALEPTN----------RIQAERGLTEVWDSNEQEFRCAGVSVIRRTIEPH-GLLL 64
Query: 61 PLATLSVEIAYHLPPGSVLPDSFPHCDDSF 90
P T + E+ Y + P C +++
Sbjct: 65 PSFTSAPELIYIEQGNGITGMMIPGCPETY 94
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,016,665
Number of Sequences: 62578
Number of extensions: 599615
Number of successful extensions: 2497
Number of sequences better than 100.0: 128
Number of HSP's better than 100.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1048
Number of HSP's gapped (non-prelim): 750
length of query: 541
length of database: 14,973,337
effective HSP length: 104
effective length of query: 437
effective length of database: 8,465,225
effective search space: 3699303325
effective search space used: 3699303325
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)