BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 037007
         (152 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1FC4|A Chain A, 2-Amino-3-Ketobutyrate Coa Ligase
 pdb|1FC4|B Chain B, 2-Amino-3-Ketobutyrate Coa Ligase
          Length = 401

 Score = 29.6 bits (65), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 26/83 (31%), Positives = 38/83 (45%), Gaps = 5/83 (6%)

Query: 35  GAHSHGPELSSVDLKRATQSHYEFLGSYLGSNENPEEAIFYSYTRHING--FAAKL--DD 90
           G  SHG   +SV     TQ  ++ L   L +    E+AI YS     NG  F   L  +D
Sbjct: 71  GXDSHGFGXASVRFICGTQDSHKELEQKLAAFLGXEDAILYSSCFDANGGLFETLLGAED 130

Query: 91  AVAAEIAKHPKVL-SVFLSKEKK 112
           A+ ++   H  ++  V L K K+
Sbjct: 131 AIISDALNHASIIDGVRLCKAKR 153


>pdb|3I6S|A Chain A, Crystal Structure Of The Plant Subtilisin-Like Protease
           Sbt3
 pdb|3I6S|B Chain B, Crystal Structure Of The Plant Subtilisin-Like Protease
           Sbt3
 pdb|3I74|A Chain A, Crystal Structure Of The Plant Subtilisin-Like Protease
           Sbt3 In Complex With A Chloromethylketone Inhibitor
 pdb|3I74|B Chain B, Crystal Structure Of The Plant Subtilisin-Like Protease
           Sbt3 In Complex With A Chloromethylketone Inhibitor
          Length = 649

 Score = 27.7 bits (60), Expect = 2.5,   Method: Composition-based stats.
 Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 5/38 (13%)

Query: 115 TTHSWEFLGLEQNGRIPPNSIWEKARYGEDAIIGNIDS 152
           TTH+ +FL L      P + +W  +  G+D I+  +DS
Sbjct: 1   TTHTSDFLKLN-----PSSGLWPASGLGQDVIVAVLDS 33


>pdb|3O0D|A Chain A, Crystal Structure Of Lip2 Lipase From Yarrowia Lipolytica
           At 1.7 A Resolution
 pdb|3O0D|B Chain B, Crystal Structure Of Lip2 Lipase From Yarrowia Lipolytica
           At 1.7 A Resolution
 pdb|3O0D|C Chain C, Crystal Structure Of Lip2 Lipase From Yarrowia Lipolytica
           At 1.7 A Resolution
 pdb|3O0D|D Chain D, Crystal Structure Of Lip2 Lipase From Yarrowia Lipolytica
           At 1.7 A Resolution
 pdb|3O0D|E Chain E, Crystal Structure Of Lip2 Lipase From Yarrowia Lipolytica
           At 1.7 A Resolution
 pdb|3O0D|F Chain F, Crystal Structure Of Lip2 Lipase From Yarrowia Lipolytica
           At 1.7 A Resolution
 pdb|3O0D|G Chain G, Crystal Structure Of Lip2 Lipase From Yarrowia Lipolytica
           At 1.7 A Resolution
          Length = 301

 Score = 26.6 bits (57), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 17/73 (23%), Positives = 35/73 (47%), Gaps = 6/73 (8%)

Query: 25  AAKQSYVVYLGAHSHGPELSSVDLKRATQSHYEFLGSYLGSNENPEEAIFY-----SYTR 79
           A+KQ Y+V  G HS    ++ + + +A  ++++ L + + S    ++ + +     SY  
Sbjct: 77  ASKQIYLVIRGTHSLEDVITDIRIMQAPLTNFD-LAANISSTATCDDCLVHNGFIQSYNN 135

Query: 80  HINGFAAKLDDAV 92
             N    KLD  +
Sbjct: 136 TYNQIGPKLDSVI 148


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.315    0.131    0.387 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,296,106
Number of Sequences: 62578
Number of extensions: 159571
Number of successful extensions: 420
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 420
Number of HSP's gapped (non-prelim): 3
length of query: 152
length of database: 14,973,337
effective HSP length: 90
effective length of query: 62
effective length of database: 9,341,317
effective search space: 579161654
effective search space used: 579161654
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.7 bits)