Query 037007
Match_columns 152
No_of_seqs 171 out of 1168
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 07:38:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037007.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037007hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05922 Inhibitor_I9: Peptida 99.6 5.2E-16 1.1E-20 104.5 5.3 78 29-114 1-82 (82)
2 KOG1153 Subtilisin-related pro 98.3 1.1E-06 2.3E-11 76.6 5.8 118 26-152 79-228 (501)
3 KOG4266 Subtilisin kexin isozy 86.7 0.95 2.1E-05 42.0 4.2 63 90-152 111-210 (1033)
4 KOG0074 GTP-binding ADP-ribosy 79.9 1.5 3.3E-05 33.7 2.3 43 102-152 53-95 (185)
5 PTZ00262 subtilisin-like prote 69.9 2.8 6E-05 38.8 1.8 14 139-152 312-325 (639)
6 PF07172 GRP: Glycine rich pro 52.8 8.3 0.00018 27.0 1.3 14 1-15 1-14 (95)
7 PF09902 DUF2129: Uncharacteri 46.9 24 0.00052 23.5 2.8 27 90-116 43-69 (71)
8 KOG0070 GTP-binding ADP-ribosy 43.7 18 0.00038 28.4 2.0 31 117-152 64-94 (181)
9 KOG3526 Subtilisin-like propro 37.7 1.7E+02 0.0036 26.2 7.2 18 134-151 152-169 (629)
10 PF03352 Adenine_glyco: Methyl 33.5 15 0.00032 28.8 0.1 31 74-104 48-82 (179)
11 PF06692 MNSV_P7B: Melon necro 31.0 1.2E+02 0.0027 19.4 4.0 32 4-36 14-45 (61)
12 PRK02302 hypothetical protein; 29.3 64 0.0014 22.5 2.7 28 90-117 49-76 (89)
13 PF13291 ACT_4: ACT domain; PD 28.9 53 0.0012 21.1 2.2 15 93-107 66-80 (80)
14 TIGR00624 tag DNA-3-methyladen 27.3 28 0.0006 27.2 0.7 31 74-104 52-86 (179)
15 cd04888 ACT_PheB-BS C-terminal 26.6 60 0.0013 20.3 2.1 14 93-106 60-73 (76)
16 PRK02886 hypothetical protein; 26.2 76 0.0016 22.0 2.7 29 90-118 47-75 (87)
17 COG2818 Tag 3-methyladenine DN 24.7 26 0.00056 27.7 0.1 31 74-104 54-88 (188)
18 cd04901 ACT_3PGDH C-terminal A 23.2 1E+02 0.0022 18.7 2.7 19 88-106 49-67 (69)
19 cd04877 ACT_TyrR N-terminal AC 23.1 70 0.0015 20.4 2.0 17 93-109 55-71 (74)
20 PRK10353 3-methyl-adenine DNA 21.3 33 0.00072 27.0 0.2 31 74-104 53-87 (187)
21 PF11080 DUF2622: Protein of u 21.2 2.3E+02 0.005 20.0 4.3 29 71-99 43-71 (96)
22 COG3062 NapD Uncharacterized p 21.1 96 0.0021 21.8 2.4 21 87-107 54-74 (94)
No 1
>PF05922 Inhibitor_I9: Peptidase inhibitor I9; InterPro: IPR010259 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. Limited proteolysis of most large protein precursors is carried out in vivo by the subtilisin-like pro-protein convertases. Many important biological processes such as peptide hormone synthesis, viral protein processing and receptor maturation involve proteolytic processing by these enzymes []. The subtilisin-serine protease (SRSP) family hormone and pro-protein convertases (furin, PC1/3, PC2, PC4, PACE4, PC5/6, and PC7/7/LPC) act within the secretory pathway to cleave polypeptide precursors at specific basic sites, generating their biologically active forms. Serum proteins, pro-hormones, receptors, zymogens, viral surface glycoproteins, bacterial toxins, amongst others, are activated by this route []. The SRSPs share the same domain structure, including a signal peptide, the pro-peptide, the catalytic domain, the P/middle or homo B domain, and the C terminus. Proteinase propeptide inhibitors (sometimes refered to as activation peptides) are responsible for the modulation of folding and activity of the pro-enzyme or zymogen. The pro-segment docks into the enzyme moiety shielding the substrate binding site, thereby promoting inhibition of the enzyme. Several such propeptides share a similar topology [], despite often low sequence identities []. The propeptide region has an open-sandwich antiparallel-alpha/antiparallel-beta fold, with two alpha-helices and four beta-strands with a (beta/alpha/beta)x2 topology. This group of sequences contain the propeptide domain at the N terminus of peptidases belonging to MEROPS family S8A, subtilisins. A number of the members of this group of sequences belong to MEROPS inhibitor family I9, clan I-. The propeptide is removed by proteolytic cleavage; removal activating the enzyme.; GO: 0004252 serine-type endopeptidase activity, 0042802 identical protein binding, 0043086 negative regulation of catalytic activity; PDB: 3CNQ_P 1SPB_P 3CO0_P 1ITP_A 1V5I_B 1SCJ_B 3P5B_P 2XTJ_P 2W2M_P 2P4E_P ....
Probab=99.62 E-value=5.2e-16 Score=104.50 Aligned_cols=78 Identities=29% Similarity=0.440 Sum_probs=56.7
Q ss_pred eEEEEeCCCCCCCCCccchhhhhhHHHHHHHHhhhCC----CCCCccceeeeeccccccccccCCHHHHHHHhCCCCEEE
Q 037007 29 SYVVYLGAHSHGPELSSVDLKRATQSHYEFLGSYLGS----NENPEEAIFYSYTRHINGFAAKLDDAVAAEIAKHPKVLS 104 (152)
Q Consensus 29 ~YIV~m~~~~~~~~~~~~~~~~~~~~H~~~l~s~~~~----~~~~~~~i~~sy~~~~~GFaa~lt~~e~~~L~~~p~V~~ 104 (152)
+|||.|++.... .....+|.+|+.+.+.+ ......++.++|+.+||||+++|+++++++|+++|+|.+
T Consensus 1 ~YIV~~k~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~Gfs~~l~~~~i~~L~~~p~V~~ 72 (82)
T PF05922_consen 1 RYIVVFKDDASA--------ASSFSSHKSWQASILKSALKSASSINAKVLYSYDNAFNGFSAKLSEEEIEKLRKDPGVKS 72 (82)
T ss_dssp EEEEEE-TTSTH--------HCHHHHHHHHHH----HHHHTH-TTT-EEEEEESSTSSEEEEEE-HHHHHHHHTSTTEEE
T ss_pred CEEEEECCCCCc--------chhHHHHHHHHHHHHhhhhhhhcccCCceEEEEeeeEEEEEEEeCHHHHHHHHcCCCeEE
Confidence 699999975431 22467777777754432 122346799999999999999999999999999999999
Q ss_pred EEcCCCcccc
Q 037007 105 VFLSKEKKLH 114 (152)
Q Consensus 105 V~~d~~~~l~ 114 (152)
|+||+.+++|
T Consensus 73 Ve~D~~v~l~ 82 (82)
T PF05922_consen 73 VEPDQVVSLH 82 (82)
T ss_dssp EEEECEEEE-
T ss_pred EEeCceEecC
Confidence 9999998875
No 2
>KOG1153 consensus Subtilisin-related protease/Vacuolar protease B [Posttranslational modification, protein turnover, chaperones]
Probab=98.31 E-value=1.1e-06 Score=76.58 Aligned_cols=118 Identities=11% Similarity=0.152 Sum_probs=88.1
Q ss_pred CCceEEEEeCCCCCCCCCccchhhhhhHHHHHHHHhhhCCCCC---C--c-------------cceeeeec---cccccc
Q 037007 26 AKQSYVVYLGAHSHGPELSSVDLKRATQSHYEFLGSYLGSNEN---P--E-------------EAIFYSYT---RHINGF 84 (152)
Q Consensus 26 ~~~~YIV~m~~~~~~~~~~~~~~~~~~~~H~~~l~s~~~~~~~---~--~-------------~~i~~sy~---~~~~GF 84 (152)
....|||..++... ....+.|.+|+...+..... . . ..+.+.|. .+|+||
T Consensus 79 ~~~~YiV~f~~~~~---------q~~~s~~~~~~~~~h~~s~~~~s~~~~f~~~d~~~s~~~~~~i~~~f~i~~~~~~~y 149 (501)
T KOG1153|consen 79 LPSRYIVVFKPDAS---------QQKISAHNRWVQQSHEVSSGKLSSEDAFYVKDTSDSKSTFGGIKNVFDIGGRVFRGY 149 (501)
T ss_pred cccceEEEeCCCcc---------HHHHHhhhHHHHHHhhhhhccccccceeEeeccccchhhhcccccccccccchhhcc
Confidence 56799999985322 45677899998876632210 0 0 12555555 379999
Q ss_pred cccCCHHHHHHHhCCCCEEEEEcCCCccccc-----cccCCccCcCCCCCCC-C-----CCccccCCCCCCcEEEEecC
Q 037007 85 AAKLDDAVAAEIAKHPKVLSVFLSKEKKLHT-----THSWEFLGLEQNGRIP-P-----NSIWEKARYGEDAIIGNIDS 152 (152)
Q Consensus 85 aa~lt~~e~~~L~~~p~V~~V~~d~~~~l~t-----t~s~~flGl~~~~~~~-~-----~~~~~~~~~G~gviVgViDT 152 (152)
...++.+-...++..|-++.|+++..+.... +|.--.|||-|++|.. . ..|.++.++|+||..||+||
T Consensus 150 ~~~ft~~~v~~i~~~p~~~~ve~~~~v~~~~~~~i~~Q~~APwgLaRvsh~~~~~y~~~~~Y~Y~~~aG~gvtaYv~DT 228 (501)
T KOG1153|consen 150 TGYFTGESVCSIRSDPLIKAVEKDSVVEVDKISTIMLQNNAPWGLARVSHREKLKYDSWGNYVYEIDAGKGVTAYVLDT 228 (501)
T ss_pred ccccccceeeeeccCcceeecccccccccccccceecccCCchhhhhhcccccccccchheEEeecccCCCeEEEEecc
Confidence 9999999999999999999999999988764 5655558999998642 1 23556678999999999998
No 3
>KOG4266 consensus Subtilisin kexin isozyme-1/site 1 protease, subtilase superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=86.68 E-value=0.95 Score=42.05 Aligned_cols=63 Identities=22% Similarity=0.354 Sum_probs=41.4
Q ss_pred HHHHHHHhCCCCEEEEEcCCCcccc------------ccccCCcc-CcCCCC-------------C-----------CCC
Q 037007 90 DAVAAEIAKHPKVLSVFLSKEKKLH------------TTHSWEFL-GLEQNG-------------R-----------IPP 132 (152)
Q Consensus 90 ~~e~~~L~~~p~V~~V~~d~~~~l~------------tt~s~~fl-Gl~~~~-------------~-----------~~~ 132 (152)
+-++++|..+|+|+.|+|.+.+-.- -|++-.|+ |..+.. | ..+
T Consensus 111 ~~~ierLe~hp~vk~v~pqr~V~r~l~y~~~~~~p~n~t~~~~~~qg~~~~r~a~~s~~~~n~~RHl~a~~rQv~s~l~A 190 (1033)
T KOG4266|consen 111 VGEIERLEMHPDVKVVFPQRRVLRGLSYPDGKKRPGNITTSMSFEQGTESSRMADTSNTTLNWSRHLLAQKRQVTSMLGA 190 (1033)
T ss_pred hheeeehhcCCCceeecchhhhhhcccccccCCCCCcceeeeeccccccccCCccccccccccchhhhhhhHHHHHHhch
Confidence 4568999999999999998865431 11222222 211110 1 122
Q ss_pred CCccccCCCCCCcEEEEecC
Q 037007 133 NSIWEKARYGEDAIIGNIDS 152 (152)
Q Consensus 133 ~~~~~~~~~G~gviVgViDT 152 (152)
+-+|....+|++|.|+|.||
T Consensus 191 d~LWk~GyTGa~VkvAiFDT 210 (1033)
T KOG4266|consen 191 DHLWKKGYTGAKVKVAIFDT 210 (1033)
T ss_pred hhHHhccccCCceEEEEeec
Confidence 56888888999999999998
No 4
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=79.91 E-value=1.5 Score=33.69 Aligned_cols=43 Identities=23% Similarity=0.289 Sum_probs=30.6
Q ss_pred EEEEEcCCCccccccccCCccCcCCCCCCCCCCccccCCCCCCcEEEEecC
Q 037007 102 VLSVFLSKEKKLHTTHSWEFLGLEQNGRIPPNSIWEKARYGEDAIIGNIDS 152 (152)
Q Consensus 102 V~~V~~d~~~~l~tt~s~~flGl~~~~~~~~~~~~~~~~~G~gviVgViDT 152 (152)
++.|+-+..+++. -|+.=|-..+ ++||.+...--+.+|||||+
T Consensus 53 ~k~v~~~g~f~Ln---vwDiGGqr~I-----RpyWsNYyenvd~lIyVIDS 95 (185)
T KOG0074|consen 53 TKKVEYDGTFHLN---VWDIGGQRGI-----RPYWSNYYENVDGLIYVIDS 95 (185)
T ss_pred eEEEeecCcEEEE---EEecCCcccc-----chhhhhhhhccceEEEEEeC
Confidence 3677777777664 4665454444 47998876778999999996
No 5
>PTZ00262 subtilisin-like protease; Provisional
Probab=69.91 E-value=2.8 Score=38.84 Aligned_cols=14 Identities=36% Similarity=0.216 Sum_probs=12.1
Q ss_pred CCCCCCcEEEEecC
Q 037007 139 ARYGEDAIIGNIDS 152 (152)
Q Consensus 139 ~~~G~gviVgViDT 152 (152)
...|+||+|+||||
T Consensus 312 ~~~g~gV~VAVIDT 325 (639)
T PTZ00262 312 PHEVNDTNICVIDS 325 (639)
T ss_pred ccCCCCcEEEEEcc
Confidence 34689999999998
No 6
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=52.84 E-value=8.3 Score=27.04 Aligned_cols=14 Identities=29% Similarity=0.149 Sum_probs=8.0
Q ss_pred CCcchhHHHHHHHHH
Q 037007 1 MRLLAPTLFLLYCLL 15 (152)
Q Consensus 1 ~~~~~~~~~~~~~l~ 15 (152)
|+ ++..|+|.++|.
T Consensus 1 Ma-SK~~llL~l~LA 14 (95)
T PF07172_consen 1 MA-SKAFLLLGLLLA 14 (95)
T ss_pred Cc-hhHHHHHHHHHH
Confidence 77 666555555444
No 7
>PF09902 DUF2129: Uncharacterized protein conserved in bacteria (DUF2129); InterPro: IPR016979 This is a group of uncharacterised conserved proteins.
Probab=46.91 E-value=24 Score=23.50 Aligned_cols=27 Identities=22% Similarity=0.175 Sum_probs=21.6
Q ss_pred HHHHHHHhCCCCEEEEEcCCCcccccc
Q 037007 90 DAVAAEIAKHPKVLSVFLSKEKKLHTT 116 (152)
Q Consensus 90 ~~e~~~L~~~p~V~~V~~d~~~~l~tt 116 (152)
++.+++|++++-|..|++...-.+.++
T Consensus 43 e~~~~kl~~l~fVk~Ve~S~~~~l~~~ 69 (71)
T PF09902_consen 43 EEIIEKLKKLKFVKKVEPSPRPELDTE 69 (71)
T ss_pred HHHHHHHhcCCCeeEEeccChhhccCC
Confidence 445688999999999999987776653
No 8
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=43.70 E-value=18 Score=28.45 Aligned_cols=31 Identities=23% Similarity=0.438 Sum_probs=23.4
Q ss_pred ccCCccCcCCCCCCCCCCccccCCCCCCcEEEEecC
Q 037007 117 HSWEFLGLEQNGRIPPNSIWEKARYGEDAIIGNIDS 152 (152)
Q Consensus 117 ~s~~flGl~~~~~~~~~~~~~~~~~G~gviVgViDT 152 (152)
.-||.-|..++. .+|.........+|+|||+
T Consensus 64 ~vWDvGGq~k~R-----~lW~~Y~~~t~~lIfVvDS 94 (181)
T KOG0070|consen 64 TVWDVGGQEKLR-----PLWKHYFQNTQGLIFVVDS 94 (181)
T ss_pred EEEecCCCcccc-----cchhhhccCCcEEEEEEeC
Confidence 358877886653 5787766677889999996
No 9
>KOG3526 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones]
Probab=37.73 E-value=1.7e+02 Score=26.18 Aligned_cols=18 Identities=17% Similarity=0.411 Sum_probs=15.4
Q ss_pred CccccCCCCCCcEEEEec
Q 037007 134 SIWEKARYGEDAIIGNID 151 (152)
Q Consensus 134 ~~~~~~~~G~gviVgViD 151 (152)
..|...-+|++|.++|.|
T Consensus 152 ~awa~g~tgknvttaimd 169 (629)
T KOG3526|consen 152 EAWALGYTGKNVTTAIMD 169 (629)
T ss_pred HHHhhcccCCCceEEeec
Confidence 467777889999999998
No 10
>PF03352 Adenine_glyco: Methyladenine glycosylase; InterPro: IPR005019 This family of methyladenine glycosylases includes DNA-3-methyladenine glycosylase I (3.2.2.20 from EC) which acts as a base excision repair enzyme by severing the glycosylic bond of numerous damaged bases. The enzyme is constitutively expressed and is specific for the alkylated 3-methyladenine DNA.; GO: 0008725 DNA-3-methyladenine glycosylase I activity, 0006284 base-excision repair; PDB: 2OFI_A 2OFK_A 2JG6_A 4AIA_E 4AI5_C 4AI4_A 1LMZ_A 1P7M_A 1NKU_A.
Probab=33.51 E-value=15 Score=28.76 Aligned_cols=31 Identities=19% Similarity=0.457 Sum_probs=24.6
Q ss_pred eeeecccccccc----ccCCHHHHHHHhCCCCEEE
Q 037007 74 FYSYTRHINGFA----AKLDDAVAAEIAKHPKVLS 104 (152)
Q Consensus 74 ~~sy~~~~~GFa----a~lt~~e~~~L~~~p~V~~ 104 (152)
...|..+|.||- |.++++++++|.+.|++..
T Consensus 48 r~~~r~aF~~Fd~~~vA~~~e~~ie~l~~d~~iIR 82 (179)
T PF03352_consen 48 REAFREAFAGFDPEKVAKMDEEDIERLMQDPGIIR 82 (179)
T ss_dssp HHHHHHHTGGGHHHHHHT--HHHHHHHTTSTTSS-
T ss_pred HHHHHHHHHCCCHHHHHcCCHHHHHHHhcCcchhh
Confidence 456889999996 7999999999999999864
No 11
>PF06692 MNSV_P7B: Melon necrotic spot virus P7B protein; InterPro: IPR009575 This family consists of several Melon necrotic spot virus (MNSV) P7B proteins. The function of this family is unknown.
Probab=31.00 E-value=1.2e+02 Score=19.36 Aligned_cols=32 Identities=22% Similarity=0.304 Sum_probs=17.6
Q ss_pred chhHHHHHHHHHHHHhccccccCCceEEEEeCC
Q 037007 4 LAPTLFLLYCLLFSLRQRPTLAAKQSYVVYLGA 36 (152)
Q Consensus 4 ~~~~~~~~~~l~~~~~~~~~~~~~~~YIV~m~~ 36 (152)
+-|.+.++..++|+++.. -..+..+|.=|.+.
T Consensus 14 ~~~lLiliis~~f~lI~~-l~qq~~~y~HH~d~ 45 (61)
T PF06692_consen 14 SGPLLILIISFVFFLITS-LGQQGNTYVHHFDN 45 (61)
T ss_pred hhHHHHHHHHHHHHHHhh-hccCCCeeEEeecC
Confidence 345555555555555433 23356688777664
No 12
>PRK02302 hypothetical protein; Provisional
Probab=29.25 E-value=64 Score=22.48 Aligned_cols=28 Identities=18% Similarity=0.100 Sum_probs=22.8
Q ss_pred HHHHHHHhCCCCEEEEEcCCCccccccc
Q 037007 90 DAVAAEIAKHPKVLSVFLSKEKKLHTTH 117 (152)
Q Consensus 90 ~~e~~~L~~~p~V~~V~~d~~~~l~tt~ 117 (152)
++.+++|++++-|..|+++..-.+.++-
T Consensus 49 e~~~~kl~~l~fVk~Ve~S~~~~l~~~f 76 (89)
T PRK02302 49 EQKLEELSKLKFVKKVRPSAIDEIDQNF 76 (89)
T ss_pred HHHHHHHhcCCCeeEEcccCchhccchh
Confidence 4446889999999999999988887653
No 13
>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.
Probab=28.86 E-value=53 Score=21.10 Aligned_cols=15 Identities=27% Similarity=0.301 Sum_probs=12.7
Q ss_pred HHHHhCCCCEEEEEc
Q 037007 93 AAEIAKHPKVLSVFL 107 (152)
Q Consensus 93 ~~~L~~~p~V~~V~~ 107 (152)
+++|++.|||..|+.
T Consensus 66 i~~L~~i~~V~~V~R 80 (80)
T PF13291_consen 66 IRKLRQIPGVISVER 80 (80)
T ss_dssp HHHHCTSTTEEEEEE
T ss_pred HHHHHCCCCeeEEEC
Confidence 578899999999873
No 14
>TIGR00624 tag DNA-3-methyladenine glycosylase I. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=27.31 E-value=28 Score=27.23 Aligned_cols=31 Identities=23% Similarity=0.449 Sum_probs=26.7
Q ss_pred eeeecccccccc----ccCCHHHHHHHhCCCCEEE
Q 037007 74 FYSYTRHINGFA----AKLDDAVAAEIAKHPKVLS 104 (152)
Q Consensus 74 ~~sy~~~~~GFa----a~lt~~e~~~L~~~p~V~~ 104 (152)
...|..+|.||- |.++++++++|...|++..
T Consensus 52 r~~fr~aF~~Fd~~~VA~~~e~~ie~L~~d~~IIR 86 (179)
T TIGR00624 52 RENYRRAFSGFDIVKVARMTDADVERLLQDDGIIR 86 (179)
T ss_pred HHHHHHHHcCCCHHHHhCCCHHHHHHHhcCccchh
Confidence 456888999995 6999999999999999864
No 15
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=26.65 E-value=60 Score=20.26 Aligned_cols=14 Identities=21% Similarity=0.050 Sum_probs=12.3
Q ss_pred HHHHhCCCCEEEEE
Q 037007 93 AAEIAKHPKVLSVF 106 (152)
Q Consensus 93 ~~~L~~~p~V~~V~ 106 (152)
+++|++.|+|.+|+
T Consensus 60 ~~~L~~i~~V~~v~ 73 (76)
T cd04888 60 LEELREIDGVEKVE 73 (76)
T ss_pred HHHHhcCCCeEEEE
Confidence 57889999999986
No 16
>PRK02886 hypothetical protein; Provisional
Probab=26.25 E-value=76 Score=22.02 Aligned_cols=29 Identities=21% Similarity=0.164 Sum_probs=23.7
Q ss_pred HHHHHHHhCCCCEEEEEcCCCcccccccc
Q 037007 90 DAVAAEIAKHPKVLSVFLSKEKKLHTTHS 118 (152)
Q Consensus 90 ~~e~~~L~~~p~V~~V~~d~~~~l~tt~s 118 (152)
++.+++|++++-|..|+++..-.+.++..
T Consensus 47 e~~~~kl~~l~fVk~Ve~S~r~~l~~~y~ 75 (87)
T PRK02886 47 EDIMNKLSSLPFVKRVEPSYRPFLKTEFE 75 (87)
T ss_pred HHHHHHHhcCCCeeEEcccCCchhhhhhh
Confidence 44468899999999999999888877653
No 17
>COG2818 Tag 3-methyladenine DNA glycosylase [DNA replication, recombination, and repair]
Probab=24.70 E-value=26 Score=27.70 Aligned_cols=31 Identities=10% Similarity=0.290 Sum_probs=27.3
Q ss_pred eeeecccccccc----ccCCHHHHHHHhCCCCEEE
Q 037007 74 FYSYTRHINGFA----AKLDDAVAAEIAKHPKVLS 104 (152)
Q Consensus 74 ~~sy~~~~~GFa----a~lt~~e~~~L~~~p~V~~ 104 (152)
...|..+|.||- |.+|++++++|-..+|++.
T Consensus 54 Re~freaF~~Fd~~kVA~~~~~dverLl~d~gIIR 88 (188)
T COG2818 54 REAFREAFHGFDPEKVAAMTEEDVERLLADAGIIR 88 (188)
T ss_pred HHHHHHHHhcCCHHHHHcCCHHHHHHHHhCcchhh
Confidence 456899999995 7999999999999999874
No 18
>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-
Probab=23.24 E-value=1e+02 Score=18.75 Aligned_cols=19 Identities=11% Similarity=0.256 Sum_probs=16.3
Q ss_pred CCHHHHHHHhCCCCEEEEE
Q 037007 88 LDDAVAAEIAKHPKVLSVF 106 (152)
Q Consensus 88 lt~~e~~~L~~~p~V~~V~ 106 (152)
-.++-+++|++.|+|..|.
T Consensus 49 ~l~~li~~l~~~~~V~~v~ 67 (69)
T cd04901 49 VSEELLEALRAIPGTIRVR 67 (69)
T ss_pred CCHHHHHHHHcCCCeEEEE
Confidence 5667789999999999886
No 19
>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein. ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence
Probab=23.10 E-value=70 Score=20.36 Aligned_cols=17 Identities=24% Similarity=0.073 Sum_probs=14.1
Q ss_pred HHHHhCCCCEEEEEcCC
Q 037007 93 AAEIAKHPKVLSVFLSK 109 (152)
Q Consensus 93 ~~~L~~~p~V~~V~~d~ 109 (152)
.++|++.|||.+|+.-+
T Consensus 55 i~~L~~i~gV~~V~R~~ 71 (74)
T cd04877 55 MPEIRRIDGVEDVKTVP 71 (74)
T ss_pred HHHHhCCCCceEEEEee
Confidence 57889999999998654
No 20
>PRK10353 3-methyl-adenine DNA glycosylase I; Provisional
Probab=21.33 E-value=33 Score=26.97 Aligned_cols=31 Identities=10% Similarity=0.263 Sum_probs=26.7
Q ss_pred eeeecccccccc----ccCCHHHHHHHhCCCCEEE
Q 037007 74 FYSYTRHINGFA----AKLDDAVAAEIAKHPKVLS 104 (152)
Q Consensus 74 ~~sy~~~~~GFa----a~lt~~e~~~L~~~p~V~~ 104 (152)
...|..+|.||- |.++++++++|...|++..
T Consensus 53 re~fr~aF~~Fd~~~VA~~~e~die~Ll~d~~IIR 87 (187)
T PRK10353 53 RENYRACFHQFDPVKVAAMQEEDVERLVQDAGIIR 87 (187)
T ss_pred HHHHHHHHcCCCHHHHhCCCHHHHHHHhcCchhHH
Confidence 456888999996 6899999999999999864
No 21
>PF11080 DUF2622: Protein of unknown function (DUF2622); InterPro: IPR022597 This family is conserved in the Enterobacteriaceae family. The function is not known.
Probab=21.17 E-value=2.3e+02 Score=19.98 Aligned_cols=29 Identities=14% Similarity=0.143 Sum_probs=19.3
Q ss_pred cceeeeeccccccccccCCHHHHHHHhCC
Q 037007 71 EAIFYSYTRHINGFAAKLDDAVAAEIAKH 99 (152)
Q Consensus 71 ~~i~~sy~~~~~GFaa~lt~~e~~~L~~~ 99 (152)
.+..|.-...==|+.-.++++|+++|++-
T Consensus 43 ~G~~HeLgtntfgl~S~l~~~eV~~la~~ 71 (96)
T PF11080_consen 43 DGNPHELGTNTFGLISALSAEEVAQLARG 71 (96)
T ss_pred CCCEeecCCCeEEEEecCCHHHHHHHHHH
Confidence 34566655444456667899999988763
No 22
>COG3062 NapD Uncharacterized protein involved in formation of periplasmic nitrate reductase [Inorganic ion transport and metabolism]
Probab=21.11 E-value=96 Score=21.83 Aligned_cols=21 Identities=29% Similarity=0.211 Sum_probs=16.0
Q ss_pred cCCHHHHHHHhCCCCEEEEEc
Q 037007 87 KLDDAVAAEIAKHPKVLSVFL 107 (152)
Q Consensus 87 ~lt~~e~~~L~~~p~V~~V~~ 107 (152)
.+--++++.++++|||++|.-
T Consensus 54 ~~l~~tie~i~nl~gVlav~l 74 (94)
T COG3062 54 ETLLETIESIRNLPGVLAVSL 74 (94)
T ss_pred HHHHHHHHHHhcCCceeEEEE
Confidence 344567889999999998753
Done!