BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 037008
         (270 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9S7C9|ESCA_ARATH Putative DNA-binding protein ESCAROLA OS=Arabidopsis thaliana
           GN=ESC PE=2 SV=1
          Length = 311

 Score =  119 bits (297), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 75/193 (38%), Positives = 118/193 (61%), Gaps = 11/193 (5%)

Query: 28  SKKNKNSHHHHHHHHHQQLMVIESSSTPENATRKPRGRPPGSKNKPKPPVVITRDITDSS 87
           S  ++ S H +  HH Q     + +++     ++PRGRPPGSKNK KPP+++TRD    +
Sbjct: 54  SDDSRESDHSNKDHHQQGRPDSDPNTSSSAPGKRPRGRPPGSKNKAKPPIIVTRD--SPN 111

Query: 88  AMKPVILEISAGADIIDSVITFARRNHAGISLVSASGSVSHVTLRQPIS---------HA 138
           A++  +LE+S GADI++SV T+ARR   G+S++  +G+VS+VTLRQP++           
Sbjct: 112 ALRSHVLEVSPGADIVESVSTYARRRGRGVSVLGGNGTVSNVTLRQPVTPGNGGGVSGGG 171

Query: 139 HSLSLHGPFHLLSLSGSFYDSSSSSSPSSFGVTLAGAQGQVFGGIVAGKVTAASKVVVVA 198
             ++LHG F +LSL+G+     +        + LAG QGQV GG V   + A++ V+++A
Sbjct: 172 GVVTLHGRFEILSLTGTVLPPPAPPGAGGLSIFLAGGQGQVVGGSVVAPLIASAPVILMA 231

Query: 199 ATFLNPLVHSLPI 211
           A+F N +   LPI
Sbjct: 232 ASFSNAVFERLPI 244


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.311    0.124    0.353 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 101,285,678
Number of Sequences: 539616
Number of extensions: 4123922
Number of successful extensions: 29827
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 432
Number of HSP's successfully gapped in prelim test: 186
Number of HSP's that attempted gapping in prelim test: 22659
Number of HSP's gapped (non-prelim): 3749
length of query: 270
length of database: 191,569,459
effective HSP length: 116
effective length of query: 154
effective length of database: 128,974,003
effective search space: 19861996462
effective search space used: 19861996462
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 60 (27.7 bits)