Query 037008
Match_columns 270
No_of_seqs 207 out of 436
Neff 4.1
Searched_HMMs 46136
Date Fri Mar 29 07:38:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037008.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037008hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03479 DUF296: Domain of unk 100.0 2.6E-28 5.7E-33 198.7 10.3 118 89-208 1-120 (120)
2 COG1661 Predicted DNA-binding 99.9 2.6E-24 5.6E-29 182.6 14.5 122 87-212 7-131 (141)
3 PF02178 AT_hook: AT hook moti 91.4 0.077 1.7E-06 28.9 0.5 13 60-72 1-13 (13)
4 smart00384 AT_hook DNA binding 81.6 0.97 2.1E-05 29.0 1.5 15 60-74 1-15 (26)
5 PF02196 RBD: Raf-like Ras-bin 46.8 1.2E+02 0.0027 22.7 7.4 43 89-133 10-54 (71)
6 PHA02620 VP3; Provisional 39.9 13 0.00029 36.6 1.0 22 56-77 316-337 (353)
7 cd01817 RGS12_RBD Ubiquitin do 37.3 60 0.0013 25.4 4.0 42 92-133 12-55 (73)
8 smart00455 RBD Raf-like Ras-bi 32.8 96 0.0021 23.3 4.5 44 90-133 10-55 (70)
9 cd01760 RBD Ubiquitin-like dom 32.3 86 0.0019 24.0 4.2 37 90-126 10-48 (72)
10 KOG1503 Phosphoribosylpyrophos 27.5 2.2E+02 0.0047 27.7 6.7 56 72-135 234-296 (354)
11 PF14869 DUF4488: Domain of un 24.3 69 0.0015 27.7 2.6 36 116-153 28-63 (133)
12 PF11906 DUF3426: Protein of u 23.0 1.7E+02 0.0036 24.1 4.6 39 145-183 65-104 (149)
13 TIGR01252 acetolac_decarb alph 22.6 4.1E+02 0.0089 24.7 7.5 92 115-210 106-209 (232)
14 PF03306 AAL_decarboxy: Alpha- 21.7 2.6E+02 0.0056 25.7 6.0 113 93-210 83-207 (220)
15 COG3527 AlsD Alpha-acetolactat 21.2 94 0.002 29.3 3.1 112 96-212 90-213 (234)
16 PRK08179 prfH peptide chain re 20.0 3E+02 0.0064 25.1 5.9 44 92-135 2-60 (200)
No 1
>PF03479 DUF296: Domain of unknown function (DUF296); InterPro: IPR005175 This putative conserved domain is found in proteins that contain AT-hook motifs IPR000637 from INTERPRO, suggesting a DNA-binding function for the proteins as a whole, however, the function of this domain is unknown. Overexpression of a protein containing this domain, Q9S7C9 from SWISSPROT, in Arabidopsis thaliana causes late flowering and modified leaf development []. ; PDB: 2DT4_A 2P6Y_A 3HWU_A 3HTN_A 2NMU_A 2H6L_A 2HX0_A.
Probab=99.95 E-value=2.6e-28 Score=198.66 Aligned_cols=118 Identities=27% Similarity=0.408 Sum_probs=100.9
Q ss_pred ceEEEEEeCCCChHHHHHHHHHHhcCceEEEEeeeceeeeEEEecCC--CCCcccccccceeEEEeeeceecCCCCCCCC
Q 037008 89 MKPVILEISAGADIIDSVITFARRNHAGISLVSASGSVSHVTLRQPI--SHAHSLSLHGPFHLLSLSGSFYDSSSSSSPS 166 (270)
Q Consensus 89 m~phVLrL~pGeDIvesI~~fa~r~~~aicVLSa~GaVSnVTLR~p~--s~~~tvtleG~FEILSLSGT~s~~~~~~~~~ 166 (270)
||+|++||++||||+++|.+||+++++..++++++|+|++|+|++++ ..+.+.+++|+|||+||+|||...+. .++.
T Consensus 1 ~r~~~~rl~~Gedl~~~l~~~~~~~~i~~~~is~iGsl~~~~l~~~~~~~~~~~~~~~g~~Ei~sl~G~i~~~~g-~~~~ 79 (120)
T PF03479_consen 1 GRVFVIRLDPGEDLLESLEAFAREHGIRSGVISGIGSLSNVTLGYYDPPSYYEPLEFEGPFEIISLSGTISPEDG-KPFV 79 (120)
T ss_dssp EEEEEEEEETTSBHHHHHHHHHHHHT-SSEEEEEEEEEEEEEEEEEETTTEEEEEEEESEEEEEEEEEEEEEETT-EEEE
T ss_pred CcEEEEEECCCCHHHHHHHHHHHHCCCcEEEEEEEeEEeEEEEEEecccCCcceEEecccEEEEEeEEEEECCCC-CCcc
Confidence 79999999999999999999999999988888999999999999984 34467899999999999999998433 3578
Q ss_pred eeEEEEeCCCCcEEceecCcceEEeccEEEEEeecCCCceee
Q 037008 167 SFGVTLAGAQGQVFGGIVAGKVTAASKVVVVAATFLNPLVHS 208 (270)
Q Consensus 167 hLHISLAg~dGqViGGHV~G~LIAAt~V~VV~gsF~~~~f~R 208 (270)
|||++|+|.+|+|+||||..+.+ ..++||++-.+....|+|
T Consensus 80 HlHisl~~~~g~v~gGHl~~g~v-~~t~Ev~i~~~~~~~~~~ 120 (120)
T PF03479_consen 80 HLHISLADPDGQVFGGHLLEGTV-FATAEVVITELSGINFTR 120 (120)
T ss_dssp EEEEEEE-TTSEEEEEEEEEEEE-EEEEEEEEEEETTEEEEE
T ss_pred eEEEEEECCCCeEEeeEeCCCEE-eEEEEEEEEEecCccccC
Confidence 99999999999999999995555 445777777777777776
No 2
>COG1661 Predicted DNA-binding protein with PD1-like DNA-binding motif [General function prediction only]
Probab=99.92 E-value=2.6e-24 Score=182.59 Aligned_cols=122 Identities=18% Similarity=0.252 Sum_probs=114.1
Q ss_pred CCceEEEEEeCCCChHHHHHHHHHHhcCceEEEEeeeceeeeEEEecCCCC---CcccccccceeEEEeeeceecCCCCC
Q 037008 87 SAMKPVILEISAGADIIDSVITFARRNHAGISLVSASGSVSHVTLRQPISH---AHSLSLHGPFHLLSLSGSFYDSSSSS 163 (270)
Q Consensus 87 ~~m~phVLrL~pGeDIvesI~~fa~r~~~aicVLSa~GaVSnVTLR~p~s~---~~tvtleG~FEILSLSGT~s~~~~~~ 163 (270)
+.-|.+++||++|+|+++.|.+||+++++..++++|+|++++++||+++.+ +.++++.++|||+||.|||..++
T Consensus 7 ~~gr~~~~Rld~G~d~~~~l~~~a~~~~i~aa~v~~iGal~~~~l~~~~~~~~~y~~~~~~e~~EvlSL~G~i~~~~--- 83 (141)
T COG1661 7 SSGRVIALRLDPGEDLFSELEAFAEQEDIHAAVVTAIGALRDAKLRYFDPEEKEYETIPVNEPLEVLSLLGNIALDD--- 83 (141)
T ss_pred ccceEEEEEeCCCccHHHHHHHHHHhcCceEEEEEEeeeeeeeEEEEecCCCCceEEEecCCcEEEEEecceeecCC---
Confidence 346889999999999999999999999998899999999999999999953 46789999999999999999999
Q ss_pred CCCeeEEEEeCCCCcEEceecCcceEEeccEEEEEeecCCCceeeccCC
Q 037008 164 SPSSFGVTLAGAQGQVFGGIVAGKVTAASKVVVVAATFLNPLVHSLPIS 212 (270)
Q Consensus 164 ~~~hLHISLAg~dGqViGGHV~G~LIAAt~V~VV~gsF~~~~f~RlP~e 212 (270)
++.|||++|++++|+++||||.++++.. ++||+|-.+....+.|.+|+
T Consensus 84 p~~HlHa~l~~~~G~~~GGHL~~~~V~~-t~Ev~I~el~~~~~~R~~d~ 131 (141)
T COG1661 84 PFVHLHAALGDENGITLGGHLLEGEVFP-TAEVFIRELPGELFRREFDP 131 (141)
T ss_pred CcEEEEEEEecCCCcEEeeeecccEEeE-EEEEEEEEccccceeEecCC
Confidence 5889999999999999999999999888 79999999999999999997
No 3
>PF02178 AT_hook: AT hook motif; InterPro: IPR017956 AT hooks are DNA-binding motifs with a preference for A/T rich regions. These motifs are found in a variety of proteins, including the high mobility group (HMG) proteins [], in DNA-binding proteins from plants [] and in hBRG1 protein, a central ATPase of the human switching/sucrose non-fermenting (SWI/SNF) remodeling complex []. High mobility group (HMG) proteins are a family of relatively low molecular weight non-histone components in chromatin []. HMG-I and HMG-Y (HMGA) are proteins of about 100 amino acid residues which are produced by the alternative splicing of a single gene. HMG-I/Y proteins bind preferentially to the minor groove of AT-rich regions in double-stranded DNA in a non-sequence specific manner [, ]. It is suggested that these proteins could function in nucleosome phasing and in the 3' end processing of mRNA transcripts. They are also involved in the transcription regulation of genes containing, or in close proximity to, AT-rich regions. ; GO: 0003677 DNA binding; PDB: 2EZE_A 2EZD_A 2EZF_A 2EZG_A.
Probab=91.44 E-value=0.077 Score=28.87 Aligned_cols=13 Identities=38% Similarity=0.792 Sum_probs=4.2
Q ss_pred CCCCCCCCCCCCC
Q 037008 60 RKPRGRPPGSKNK 72 (270)
Q Consensus 60 kr~RGRPpGSknK 72 (270)
+|+||||+.+..|
T Consensus 1 ~r~RGRP~k~~~~ 13 (13)
T PF02178_consen 1 KRKRGRPRKNAKK 13 (13)
T ss_dssp S--SS--TT----
T ss_pred CCcCCCCccccCC
Confidence 5899999877654
No 4
>smart00384 AT_hook DNA binding domain with preference for A/T rich regions. Small DNA-binding motif first described in the high mobility group non-histone chromosomal protein HMG-I(Y).
Probab=81.62 E-value=0.97 Score=28.98 Aligned_cols=15 Identities=27% Similarity=0.636 Sum_probs=11.3
Q ss_pred CCCCCCCCCCCCCCC
Q 037008 60 RKPRGRPPGSKNKPK 74 (270)
Q Consensus 60 kr~RGRPpGSknKpk 74 (270)
+|+||||+..++...
T Consensus 1 kRkRGRPrK~~~~~~ 15 (26)
T smart00384 1 KRKRGRPRKAPKDXX 15 (26)
T ss_pred CCCCCCCCCCCCccc
Confidence 589999987766543
No 5
>PF02196 RBD: Raf-like Ras-binding domain; InterPro: IPR003116 This is the Ras-binding domain found in proteins related to Ras. It is found in association with the PE-bind and pkinase domains.; GO: 0005057 receptor signaling protein activity, 0007165 signal transduction; PDB: 1RFA_A 1C1Y_B 3KUD_B 1GUA_B 3KUC_B 2L05_A 3NY5_D 1RRB_A 1WFY_A 1WXM_A.
Probab=46.75 E-value=1.2e+02 Score=22.73 Aligned_cols=43 Identities=14% Similarity=0.185 Sum_probs=32.6
Q ss_pred ceEEEEEeCCCChHHHHHHHHHHhcCc--eEEEEeeeceeeeEEEec
Q 037008 89 MKPVILEISAGADIIDSVITFARRNHA--GISLVSASGSVSHVTLRQ 133 (270)
Q Consensus 89 m~phVLrL~pGeDIvesI~~fa~r~~~--aicVLSa~GaVSnVTLR~ 133 (270)
-++-++.+.||+-|.+.|...|++++. ..|.+.-+| .+--|-+
T Consensus 10 ~q~t~V~vrpg~ti~d~L~~~~~kr~L~~~~~~V~~~~--~~k~l~~ 54 (71)
T PF02196_consen 10 GQRTVVQVRPGMTIRDALSKACKKRGLNPECCDVRLVG--EKKPLDW 54 (71)
T ss_dssp TEEEEEEE-TTSBHHHHHHHHHHTTT--CCCEEEEEEE--EEEEE-T
T ss_pred CCEEEEEEcCCCCHHHHHHHHHHHcCCCHHHEEEEEcC--CCccccC
Confidence 467799999999999999999999984 678887777 4444443
No 6
>PHA02620 VP3; Provisional
Probab=39.85 E-value=13 Score=36.57 Aligned_cols=22 Identities=32% Similarity=0.471 Sum_probs=17.5
Q ss_pred CCCCCCCCCCCCCCCCCCCCCe
Q 037008 56 ENATRKPRGRPPGSKNKPKPPV 77 (270)
Q Consensus 56 ~~~~kr~RGRPpGSknKpk~p~ 77 (270)
+...||+|.|-+||++|++.|.
T Consensus 316 dgp~KKkrr~s~~~~~~~~~~~ 337 (353)
T PHA02620 316 DGPNKKKRRMSRGSSQKAKGPR 337 (353)
T ss_pred cCccccccccccccccccCCCC
Confidence 4667999999999988887743
No 7
>cd01817 RGS12_RBD Ubiquitin domain of RGS12 and RGS14. RGS12 (regulator of G signalling 12), and RGS14, are members of a family of GTPase-activating proteins (GAP's) specific for the G-alpha subunit, which act as key inhibitors of G-protein-mediated cell responses in eukaryotes. Their domain architecture includes tandem RBD domains as well as PDZ , PTB, and RGS, and GoLoco domains.
Probab=37.27 E-value=60 Score=25.36 Aligned_cols=42 Identities=14% Similarity=0.165 Sum_probs=31.4
Q ss_pred EEEEeCCCChHHHHHHHHHHhcCc--eEEEEeeeceeeeEEEec
Q 037008 92 VILEISAGADIIDSVITFARRNHA--GISLVSASGSVSHVTLRQ 133 (270)
Q Consensus 92 hVLrL~pGeDIvesI~~fa~r~~~--aicVLSa~GaVSnVTLR~ 133 (270)
-++.+.||+-|.+.|...+++++. ..|.+.-.|.=.-+.+.+
T Consensus 12 T~V~vrpG~ti~d~L~kllekRgl~~~~~~vf~~g~~k~l~~~q 55 (73)
T cd01817 12 TVVPTRPGESIRDLLSGLCEKRGINYAAVDLFLVGGDKPLVLDQ 55 (73)
T ss_pred EEEEecCCCCHHHHHHHHHHHcCCChhHEEEEEecCCcccccCC
Confidence 388999999999999999999984 566555555544444444
No 8
>smart00455 RBD Raf-like Ras-binding domain.
Probab=32.83 E-value=96 Score=23.34 Aligned_cols=44 Identities=14% Similarity=0.289 Sum_probs=33.0
Q ss_pred eEEEEEeCCCChHHHHHHHHHHhcCc--eEEEEeeeceeeeEEEec
Q 037008 90 KPVILEISAGADIIDSVITFARRNHA--GISLVSASGSVSHVTLRQ 133 (270)
Q Consensus 90 ~phVLrL~pGeDIvesI~~fa~r~~~--aicVLSa~GaVSnVTLR~ 133 (270)
+...+.+.||.-|.+.|...|++++. ..|.|.-.|.=.-+.+.+
T Consensus 10 ~~~~V~vrpg~tl~e~L~~~~~kr~l~~~~~~v~~~g~~k~ldl~~ 55 (70)
T smart00455 10 QRTVVKVRPGKTVRDALAKALKKRGLNPECCVVRLRGEKKPLDLNQ 55 (70)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEcCCCcceecCC
Confidence 56689999999999999999999994 566666666323333433
No 9
>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases. The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.
Probab=32.28 E-value=86 Score=24.00 Aligned_cols=37 Identities=11% Similarity=0.133 Sum_probs=29.2
Q ss_pred eEEEEEeCCCChHHHHHHHHHHhcCc--eEEEEeeecee
Q 037008 90 KPVILEISAGADIIDSVITFARRNHA--GISLVSASGSV 126 (270)
Q Consensus 90 ~phVLrL~pGeDIvesI~~fa~r~~~--aicVLSa~GaV 126 (270)
+.-++.+.||+-|.+.|...|++++. ..|.|.-.|.-
T Consensus 10 ~~t~V~vrpg~ti~d~L~~~c~kr~l~~~~~~v~~~~~~ 48 (72)
T cd01760 10 QRTVVPVRPGMSVRDVLAKACKKRGLNPECCDVFLLGLD 48 (72)
T ss_pred CeEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEecCC
Confidence 45589999999999999999999984 45655555543
No 10
>KOG1503 consensus Phosphoribosylpyrophosphate synthetase-associated protein [Amino acid transport and metabolism; Nucleotide transport and metabolism]
Probab=27.49 E-value=2.2e+02 Score=27.70 Aligned_cols=56 Identities=27% Similarity=0.444 Sum_probs=34.4
Q ss_pred CCCCCeeeeccCCCCCCceEEEEEeCCCChHHHHHHHHH------HhcC-ceEEEEeeeceeeeEEEecCC
Q 037008 72 KPKPPVVITRDITDSSAMKPVILEISAGADIIDSVITFA------RRNH-AGISLVSASGSVSHVTLRQPI 135 (270)
Q Consensus 72 Kpk~p~~it~~~~~~~~m~phVLrL~pGeDIvesI~~fa------~r~~-~aicVLSa~GaVSnVTLR~p~ 135 (270)
|.|||+-+-.|- +.. +.|-| +||++-+..|. ++++ -.+.|+.--|.++.=.=|+-.
T Consensus 234 k~kppltvvgdv--ggr---iaimv---ddiiddvqsfvaaae~lkergaykiyv~athgllssdapr~le 296 (354)
T KOG1503|consen 234 KEKPPLTVVGDV--GGR---IAIMV---DDIIDDVQSFVAAAEVLKERGAYKIYVMATHGLLSSDAPRLLE 296 (354)
T ss_pred ccCCCeEEEecc--Cce---EEEEe---hhhHHhHHHHHHHHHHHHhcCceEEEEEeecccccccchhhhh
Confidence 778888776664 222 23444 46766666554 3344 368899888888765555543
No 11
>PF14869 DUF4488: Domain of unknown function (DUF4488)
Probab=24.28 E-value=69 Score=27.75 Aligned_cols=36 Identities=19% Similarity=0.300 Sum_probs=28.9
Q ss_pred eEEEEeeeceeeeEEEecCCCCCcccccccceeEEEee
Q 037008 116 GISLVSASGSVSHVTLRQPISHAHSLSLHGPFHLLSLS 153 (270)
Q Consensus 116 aicVLSa~GaVSnVTLR~p~s~~~tvtleG~FEILSLS 153 (270)
..=|||.-|...|+++ .+.+ +..++..|.||+.|=+
T Consensus 28 ~lKilS~Dgtf~Ni~~-~~~~-~aiIt~~GtY~~~sD~ 63 (133)
T PF14869_consen 28 VLKILSDDGTFVNITM-IPKS-GAIITGYGTYEQPSDN 63 (133)
T ss_pred cEEEEcCCCcEEEEEE-eCCC-CcEEEEeEEEEEcCCc
Confidence 4669999999999999 3333 3688999999998843
No 12
>PF11906 DUF3426: Protein of unknown function (DUF3426); InterPro: IPR021834 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 262 to 463 amino acids in length.
Probab=23.04 E-value=1.7e+02 Score=24.14 Aligned_cols=39 Identities=21% Similarity=0.258 Sum_probs=30.1
Q ss_pred cceeEEEeeeceecCCCCC-CCCeeEEEEeCCCCcEEcee
Q 037008 145 GPFHLLSLSGSFYDSSSSS-SPSSFGVTLAGAQGQVFGGI 183 (270)
Q Consensus 145 G~FEILSLSGT~s~~~~~~-~~~hLHISLAg~dGqViGGH 183 (270)
+.=+++.++|++.+....+ .+..|.++|.|.+|+++.--
T Consensus 65 ~~~~~l~v~g~i~N~~~~~~~~P~l~l~L~D~~g~~l~~r 104 (149)
T PF11906_consen 65 DGPGVLVVSGTIRNRADFPQALPALELSLLDAQGQPLARR 104 (149)
T ss_pred CCCCEEEEEEEEEeCCCCcccCceEEEEEECCCCCEEEEE
Confidence 4557888899998875433 56789999999999987433
No 13
>TIGR01252 acetolac_decarb alpha-acetolactate decarboxylase. Puruvate can be fermented to 2,3-butanediol. It is first converted to alpha-acetolactate by alpha-acetolactate synthase, then decarboxylated to acetoin by this enzyme. Acetoin can be reduced in some species to 2,3-butanediol by acetoin reductase.
Probab=22.61 E-value=4.1e+02 Score=24.69 Aligned_cols=92 Identities=13% Similarity=0.218 Sum_probs=56.0
Q ss_pred ceEEEEeeeceeeeEEEecCCCC---Ccc----cccccceeEEEeeece----ecCCCCC-CCCeeEEEEeCCCCcEEce
Q 037008 115 AGISLVSASGSVSHVTLRQPISH---AHS----LSLHGPFHLLSLSGSF----YDSSSSS-SPSSFGVTLAGAQGQVFGG 182 (270)
Q Consensus 115 ~aicVLSa~GaVSnVTLR~p~s~---~~t----vtleG~FEILSLSGT~----s~~~~~~-~~~hLHISLAg~dGqViGG 182 (270)
...+-+-..|..++|+.|-.-.. +.. +.=+-.||+-...||+ +|.-... .-.++|+-+-+.| +-+||
T Consensus 106 N~f~Airi~G~F~~v~~Rsvp~Q~kPy~~l~e~~~~Q~~f~~~nv~GTlvGF~sP~~~~gi~v~G~HlHFisdD-r~~GG 184 (232)
T TIGR01252 106 NVFYAIRITGEFPKVQTRTVPKQEKPYPPFVEVVKGQPEFHFDNVTGTIVGFWTPAYAKGINVAGYHLHFISED-RTFGG 184 (232)
T ss_pred ccEEEEEEEEEeceeEEEecCCCCCCCcCHHHHhcCCceEEEeccEEEEEEEecchhccccCCceEEEEEecCC-CCCCc
Confidence 46788889999999999986532 111 1224557887777775 4442111 1245777666644 67899
Q ss_pred ecCcceEEeccEEEEEeecCCCceeecc
Q 037008 183 IVAGKVTAASKVVVVAATFLNPLVHSLP 210 (270)
Q Consensus 183 HV~G~LIAAt~V~VV~gsF~~~~f~RlP 210 (270)
||..--+... .|-+..+.+. --++|
T Consensus 185 HVld~~~~~~--~~~i~~~~~~-~~~lP 209 (232)
T TIGR01252 185 HVLDYIIDNG--TLEIGQIQEF-NLQLP 209 (232)
T ss_pred ceeEEEeeee--EEEEeecccE-EEeCC
Confidence 9987776544 4444455433 33566
No 14
>PF03306 AAL_decarboxy: Alpha-acetolactate decarboxylase; InterPro: IPR005128 Alpha-acetolactate decarboxylase plays a dual role in the cell: (i) it catalyzes the second step of the acetoin pathway, (S)-2-hydroxy-2-methyl-3-oxobutanoate = (R)-2-acetoin + CO2 and thus potentially the internal pH of cells and (ii) it controls the pool of alpha-acetolactate during leucine and valine synthesis.; GO: 0047605 acetolactate decarboxylase activity, 0019751 polyol metabolic process, 0005789 endoplasmic reticulum membrane; PDB: 1XV2_B.
Probab=21.71 E-value=2.6e+02 Score=25.68 Aligned_cols=113 Identities=13% Similarity=0.170 Sum_probs=60.4
Q ss_pred EEEeCCCChHHHHHHHHHHhcCceEEEEeeeceeeeEEEecCCCCC-------cccccccceeEEEeeece----ecCCC
Q 037008 93 ILEISAGADIIDSVITFARRNHAGISLVSASGSVSHVTLRQPISHA-------HSLSLHGPFHLLSLSGSF----YDSSS 161 (270)
Q Consensus 93 VLrL~pGeDIvesI~~fa~r~~~aicVLSa~GaVSnVTLR~p~s~~-------~tvtleG~FEILSLSGT~----s~~~~ 161 (270)
+.....-++|.+.|.+.....+ ....+-..|..+.|++|-..... ..+.=+-.|+.--++||+ +|.-.
T Consensus 83 ~~~~~~~~~l~~~l~~~~~~~N-~f~airi~G~F~~v~~Rsv~~qe~Py~~l~e~~~~Q~~f~~~ni~GTlVGf~sP~~~ 161 (220)
T PF03306_consen 83 LDSPMSKEELEAKLDELLPSKN-LFYAIRIDGTFSSVKTRSVPKQEKPYPPLAEVAKNQPEFTFENIEGTLVGFYSPEYM 161 (220)
T ss_dssp -EEEEEHHHHHHHHHHHSS-TT-S-EEEEEEEEEEEEEEE------SS---THHHHTT--EEEEEEEEEEEEEEEE-GGG
T ss_pred cCCCCCHHHHHHHHHHhcCCCc-eEEEEEEEEEECeEEEEeccCccCCCCChhHHhccCceEEecCcEEEEEEEEcchhc
Confidence 4455567788888888766444 46677889999999999865421 112224467777667764 45421
Q ss_pred CC-CCCeeEEEEeCCCCcEEceecCcceEEeccEEEEEeecCCCceeecc
Q 037008 162 SS-SPSSFGVTLAGAQGQVFGGIVAGKVTAASKVVVVAATFLNPLVHSLP 210 (270)
Q Consensus 162 ~~-~~~hLHISLAg~dGqViGGHV~G~LIAAt~V~VV~gsF~~~~f~RlP 210 (270)
.. ...++|+-+-+. -+.+||||..--+....|+|- .+.+ ---++|
T Consensus 162 ~gi~v~G~HlHFls~-Dr~~GGHvld~~~~~~~v~~~--~~~~-~~l~lP 207 (220)
T PF03306_consen 162 GGINVPGFHLHFLSD-DRTFGGHVLDFELDNGTVEID--VFDD-FELELP 207 (220)
T ss_dssp BTTB-CEEEEEEEET-TSS-EEEEEEEEEEEEEEEEE--E-SE-EEEE--
T ss_pred cccCCceEEEEEecC-CCCCCCCeEEEEeceEEEEEE--ecCC-EEEECc
Confidence 11 123466666553 378999998777755555554 4443 334556
No 15
>COG3527 AlsD Alpha-acetolactate decarboxylase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=21.21 E-value=94 Score=29.26 Aligned_cols=112 Identities=13% Similarity=0.216 Sum_probs=66.9
Q ss_pred eCCCChHHHHHHHHHHhcCceEEEEeeeceeeeEEEecCCCCCc-------ccccccceeEE----EeeeceecCCCCCC
Q 037008 96 ISAGADIIDSVITFARRNHAGISLVSASGSVSHVTLRQPISHAH-------SLSLHGPFHLL----SLSGSFYDSSSSSS 164 (270)
Q Consensus 96 L~pGeDIvesI~~fa~r~~~aicVLSa~GaVSnVTLR~p~s~~~-------tvtleG~FEIL----SLSGT~s~~~~~~~ 164 (270)
...-||+.+.|..+..-++. .+-+...|.-..|..|.--.... .+.-.=-|+-= .+.|.+.|.-.+..
T Consensus 90 ~~s~e~~~~~i~~~~~s~Nl-F~aiki~G~F~~v~~R~vp~q~~py~p~~e~~~~QPvf~~Env~GtiVGf~tP~~~~Gl 168 (234)
T COG3527 90 CSSSEDVFSGISGTMDSENL-FYAIKITGIFKYVHVRMVPKQTPPYTPLAEVVKIQPVFEFENVKGTIVGFWTPEYFEGL 168 (234)
T ss_pred cccHHHHHHHhhcccCCCce-EEEEEEeccccceEEEEEeccCCCCccHhhhhccCCceEEeecCceEEEecChHHhccc
Confidence 34456999999888777664 34456667777777776432211 11111122222 35566777643321
Q ss_pred -CCeeEEEEeCCCCcEEceecCcceEEeccEEEEEeecCCCceeeccCC
Q 037008 165 -PSSFGVTLAGAQGQVFGGIVAGKVTAASKVVVVAATFLNPLVHSLPIS 212 (270)
Q Consensus 165 -~~hLHISLAg~dGqViGGHV~G~LIAAt~V~VV~gsF~~~~f~RlP~e 212 (270)
-.+.|+-+.+ |++.+||||.--.+-++.|+|=.-. .-..++|..
T Consensus 169 ~v~GyHlHFit-DdrtfGGHV~D~~~~~~~veI~~~~---~l~~e~Pv~ 213 (234)
T COG3527 169 AVAGYHLHFIT-DDRTFGGHVLDFEIENGEVEIGAIE---NLRQEFPVN 213 (234)
T ss_pred ccCceEEEEee-cCccccceEEEEEeeeEEEEEeeee---eeeecCCcc
Confidence 2356666666 7899999998888888777775432 334455655
No 16
>PRK08179 prfH peptide chain release factor-like protein; Reviewed
Probab=20.00 E-value=3e+02 Score=25.15 Aligned_cols=44 Identities=9% Similarity=0.263 Sum_probs=35.0
Q ss_pred EEEEeCCCC----------hHHHHHHHHHHhcCceEEEEeee-----ceeeeEEEecCC
Q 037008 92 VILEISAGA----------DIIDSVITFARRNHAGISLVSAS-----GSVSHVTLRQPI 135 (270)
Q Consensus 92 hVLrL~pGe----------DIvesI~~fa~r~~~aicVLSa~-----GaVSnVTLR~p~ 135 (270)
.+|+|.+|. ||+.....||++.+..+.|++.. |.+..|+|..-+
T Consensus 2 ~~leI~aG~Gg~Ea~~fa~~L~~my~~~a~~~g~~~~ii~~~~~~~~gg~ksa~~~i~G 60 (200)
T PRK08179 2 ILLQLSSAQGPAECCLAVAKALERLLKEAARQGVRVTVLETETGRYPDTLRSALVSLDG 60 (200)
T ss_pred EEEEEeCCCChHHHHHHHHHHHHHHHHHHHHcCCeEEEEeCCCCCCCCceEEEEEEEEc
Confidence 378888885 89999999999999988888864 567777776643
Done!