Query 037008
Match_columns 270
No_of_seqs 207 out of 436
Neff 4.1
Searched_HMMs 29240
Date Mon Mar 25 12:38:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037008.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037008hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2p6y_A Hypothetical protein VC 100.0 3.8E-30 1.3E-34 214.1 15.9 120 88-213 1-121 (142)
2 2hx0_A Putative DNA-binding pr 100.0 5.5E-30 1.9E-34 215.9 16.0 122 86-213 15-137 (154)
3 2dt4_A Hypothetical protein PH 100.0 3E-29 1E-33 208.1 11.2 120 90-213 10-132 (143)
4 2h6l_A Hypothetical protein; N 100.0 2.5E-29 8.7E-34 209.2 10.4 120 90-213 10-132 (146)
5 3htn_A Putative DNA binding pr 100.0 4.5E-28 1.5E-32 203.3 11.4 121 90-213 16-139 (149)
6 3hwu_A Putative DNA-binding pr 99.9 3.5E-25 1.2E-29 185.1 11.4 121 90-213 13-136 (147)
7 2ezd_A High mobility group pro 97.6 2.4E-05 8E-10 48.5 2.3 17 57-73 2-18 (26)
8 4i95_A Putative uncharacterize 42.1 17 0.00057 30.6 3.0 34 116-151 37-70 (142)
9 1t3g_A X-linked interleukin-1 38.0 24 0.00084 28.7 3.4 27 96-122 51-77 (159)
10 1xv2_A ALDC, hypothetical prot 31.3 1.1E+02 0.0037 27.2 6.7 107 99-211 96-214 (237)
11 1fyx_A TOLL-like receptor 2; b 29.9 31 0.0011 27.6 2.7 28 96-123 44-71 (149)
12 2j67_A TOLL like receptor 10; 26.9 35 0.0012 28.4 2.6 27 96-122 74-100 (178)
13 4gzv_A Hypothetical protein; A 23.1 54 0.0018 27.5 3.0 34 116-151 37-70 (142)
14 2ov6_A V-type ATP synthase sub 20.8 1.4E+02 0.0047 22.7 4.7 29 93-121 23-51 (101)
No 1
>2p6y_A Hypothetical protein VCA0587; NESG, Q9KM02_vibch, VCR80, structural genomics, PSI-2, prote structure initiative; 1.63A {Vibrio cholerae}
Probab=99.97 E-value=3.8e-30 Score=214.12 Aligned_cols=120 Identities=20% Similarity=0.341 Sum_probs=110.2
Q ss_pred CceEEEEEeCCCChHHHHHHHHHHhcCc-eEEEEeeeceeeeEEEecCCCCCcccccccceeEEEeeeceecCCCCCCCC
Q 037008 88 AMKPVILEISAGADIIDSVITFARRNHA-GISLVSASGSVSHVTLRQPISHAHSLSLHGPFHLLSLSGSFYDSSSSSSPS 166 (270)
Q Consensus 88 ~m~phVLrL~pGeDIvesI~~fa~r~~~-aicVLSa~GaVSnVTLR~p~s~~~tvtleG~FEILSLSGT~s~~~~~~~~~ 166 (270)
.|++|++||++||||+++|.+||+++++ ++||++++|++++++||+++... +++++|+|||+||+|||+++ ..
T Consensus 1 ~~r~~~lrL~~Gedl~~~i~~~~~~~~i~~a~v~~~iGsl~~~~l~~~~~~~-~~~~~g~~EIlsl~Gti~~~-----~~ 74 (142)
T 2p6y_A 1 MIHLIALRLTRGMDLKQQIVQLVQQHRIHAGSIASCVGCLSTLHIRLADSVS-TLQVSAPFEILSLSGTLTYQ-----HC 74 (142)
T ss_dssp CCEEEEEEECTTCBHHHHHHHHHHHTTCSSEEEEEEEEEEEEEEEECTTSSC-EEEECSCEEEEEEEEEECSS-----CE
T ss_pred CCcEEEEEECCCCcHHHHHHHHHHHhCCCEEEEEEeEEEEEeEEEECCCCCc-cEecCCcEEEEEeEEEEeCC-----CC
Confidence 3899999999999999999999999996 79999999999999999999864 67899999999999999996 36
Q ss_pred eeEEEEeCCCCcEEceecCcceEEeccEEEEEeecCCCceeeccCCC
Q 037008 167 SFGVTLAGAQGQVFGGIVAGKVTAASKVVVVAATFLNPLVHSLPISS 213 (270)
Q Consensus 167 hLHISLAg~dGqViGGHV~G~LIAAt~V~VV~gsF~~~~f~RlP~e~ 213 (270)
|||++++|+||+|+||||++++++.+++||++..|.+..|+|+||++
T Consensus 75 HlHisl~~~~G~v~GGHl~~g~~V~~t~Ev~i~~~~~~~~~R~~D~e 121 (142)
T 2p6y_A 75 HLHIAVADAQGRVWGGHLLEGNLINTTAELMIHHYPQHHFTREFDPN 121 (142)
T ss_dssp EEEEEEECTTSCEEEEEECTTCEECC-EEEEEEECTTEEEEEEEETT
T ss_pred EEEEEEECCCCCEEccccCCCCeEEEEEEEEEEEccCCeEEEeeCCC
Confidence 99999999999999999987676688899999999999999999875
No 2
>2hx0_A Putative DNA-binding protein; NESG, PSI-2, SCR59, structural genomics, protein structure initiative; 1.55A {Salmonella choleraesuis} SCOP: d.290.1.3 PDB: 2nmu_A
Probab=99.97 E-value=5.5e-30 Score=215.91 Aligned_cols=122 Identities=20% Similarity=0.338 Sum_probs=113.1
Q ss_pred CCCceEEEEEeCCCChHHHHHHHHHHhcCc-eEEEEeeeceeeeEEEecCCCCCcccccccceeEEEeeeceecCCCCCC
Q 037008 86 SSAMKPVILEISAGADIIDSVITFARRNHA-GISLVSASGSVSHVTLRQPISHAHSLSLHGPFHLLSLSGSFYDSSSSSS 164 (270)
Q Consensus 86 ~~~m~phVLrL~pGeDIvesI~~fa~r~~~-aicVLSa~GaVSnVTLR~p~s~~~tvtleG~FEILSLSGT~s~~~~~~~ 164 (270)
.+.+|+|++||++||||+++|.+||+++++ ++||++++|+|++++||+++... +++|+|+|||+||+|||++.
T Consensus 15 ~~~~r~~vlrL~~Gedl~~~i~~~~~~~gi~~a~v~s~iGsl~~~~l~~~~~~~-~~~~~g~~EIlsl~Gti~~~----- 88 (154)
T 2hx0_A 15 ASTARFYALRLLPGQEVFSQLHAFVQQNQLRAAWIAGCTGSLTDVALRYAGQEA-TTSLTGTFEVISLNGTLELT----- 88 (154)
T ss_dssp CCCCEEEEEEECTTCBHHHHHHHHHHHHTCSSEEEEEEEEEEEEEEEECTTCSS-CEEEEEEEEEEEEEEEEETT-----
T ss_pred CCCccEEEEEECCCCcHHHHHHHHHHHhCCCEEEEEEeEeeeEEeEEEccCCCc-cEecCCcEEEEEeeeeEeCC-----
Confidence 788999999999999999999999999996 88999999999999999999864 67899999999999999996
Q ss_pred CCeeEEEEeCCCCcEEceecCcceEEeccEEEEEeecCCCceeeccCCC
Q 037008 165 PSSFGVTLAGAQGQVFGGIVAGKVTAASKVVVVAATFLNPLVHSLPISS 213 (270)
Q Consensus 165 ~~hLHISLAg~dGqViGGHV~G~LIAAt~V~VV~gsF~~~~f~RlP~e~ 213 (270)
..||||+|+|++|+|+||||++++++.+++||++..|.+..|+|+||++
T Consensus 89 ~~HlHisl~~~~G~v~GGHL~~g~~V~~t~Ev~i~~~~~~~~~R~~D~e 137 (154)
T 2hx0_A 89 GEHLHLAVSDPYGVMLGGHMMPGCTVRTTLELVIGELPALTFSRQPCAI 137 (154)
T ss_dssp EEEEEEEEECTTSCEEEEEECTTCEEEEEEEEEEEECTTEEEEEEECTT
T ss_pred CCEEEEEEECCCCCEEccccCCCCcEEEEEEEEEEEccCceEEEecCCC
Confidence 2699999999999999999988776668899999999999999999875
No 3
>2dt4_A Hypothetical protein PH0802; PPC domain, structural genomics, unknown function; 1.60A {Pyrococcus horikoshii}
Probab=99.96 E-value=3e-29 Score=208.14 Aligned_cols=120 Identities=14% Similarity=0.324 Sum_probs=108.3
Q ss_pred eEEEEEeCCCChHHHHHHHHHHhcCceEEEEeeeceeeeEEEecCCCCC---cccccccceeEEEeeeceecCCCCCCCC
Q 037008 90 KPVILEISAGADIIDSVITFARRNHAGISLVSASGSVSHVTLRQPISHA---HSLSLHGPFHLLSLSGSFYDSSSSSSPS 166 (270)
Q Consensus 90 ~phVLrL~pGeDIvesI~~fa~r~~~aicVLSa~GaVSnVTLR~p~s~~---~tvtleG~FEILSLSGT~s~~~~~~~~~ 166 (270)
++|++||++||||+++|.+||+++++..++++++|++++|+||+++... ..++++|+|||+||+|||++.+.. ++.
T Consensus 10 r~~~lrl~~Gedl~~~i~~~~~~~~i~~a~vs~iGsl~~~~l~~~~~~~~~~~~~~~~g~~EIlsl~Gti~~~~g~-p~~ 88 (143)
T 2dt4_A 10 RTYLFRVPEGEELLTYIKNFCKKEGIETAIINGIGTLKNPKIGYFLEEKKEYKVIPLKGSYELISLIGNVSLKDGE-PFV 88 (143)
T ss_dssp EEEEEEECTTCBHHHHHHHHHHHHTCCSEEEEEEEEEEEEEEEEEETTTTEEEEEECCSEEEEEEEEEEEEEETTE-EEE
T ss_pred CEEEEEECCCCcHHHHHHHHHHHcCCCEEEEEEEEEEEEEEEEeecCccCcceeEeecCCEEEEEeEEEEECCCCC-cee
Confidence 7999999999999999999999999876667999999999999997653 457899999999999999997553 478
Q ss_pred eeEEEEeCCCCcEEceecCcceEEeccEEEEEeecCCCceeeccCCC
Q 037008 167 SFGVTLAGAQGQVFGGIVAGKVTAASKVVVVAATFLNPLVHSLPISS 213 (270)
Q Consensus 167 hLHISLAg~dGqViGGHV~G~LIAAt~V~VV~gsF~~~~f~RlP~e~ 213 (270)
|||++++|+||+|+||||.+.+ .. ++||++..|.+..|+|+| ++
T Consensus 89 HlHi~l~~~~G~v~GGHl~~g~-v~-t~Ev~i~~~~~~~~~R~~-~e 132 (143)
T 2dt4_A 89 HAHVSLGNEEGIVFGGHLVEGE-VF-VAEIFLQELKGEKIERKP-TK 132 (143)
T ss_dssp EEEEEEECTTSCEEEEEEEEEE-EE-EEEEEEEEEEESCCEEBC-CT
T ss_pred eEEEEEECCCCCEeCCCCCCCc-eE-EEEEEEEEcCCCeEEEeC-CC
Confidence 9999999999999999999888 55 799999999999999999 54
No 4
>2h6l_A Hypothetical protein; NESG GR103, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.00A {Archaeoglobus fulgidus} SCOP: d.290.1.3
Probab=99.96 E-value=2.5e-29 Score=209.23 Aligned_cols=120 Identities=20% Similarity=0.232 Sum_probs=108.8
Q ss_pred eEEEEEeCCCChHHHHHHHHHHhcCceEEEEeeeceeeeEEEecCCCCC---cccccccceeEEEeeeceecCCCCCCCC
Q 037008 90 KPVILEISAGADIIDSVITFARRNHAGISLVSASGSVSHVTLRQPISHA---HSLSLHGPFHLLSLSGSFYDSSSSSSPS 166 (270)
Q Consensus 90 ~phVLrL~pGeDIvesI~~fa~r~~~aicVLSa~GaVSnVTLR~p~s~~---~tvtleG~FEILSLSGT~s~~~~~~~~~ 166 (270)
++|++||++||||+++|.+||+++++..++++++|+|++++||+++... .+++++|+|||+||+|||++.++. ++.
T Consensus 10 r~~~lrl~~Gedl~~~i~~~~~~~~i~~a~vs~iGsl~~~~l~~~~~~~~~y~~~~~~g~~EIlsl~Gti~~~dg~-p~~ 88 (146)
T 2h6l_A 10 KGFLLRLDYGKDLVRQIEEFLEEKGIHAAHISAIGAVRSAVIGYYDQEKKEYVKKELMEPLEILSLSGNVSMKDSK-PFC 88 (146)
T ss_dssp EEEEEECCTTSBHHHHHHHHHHHHTCCSEEEEEEEEEEEEEEEEEETTTTEEEEEEECSCEEEEEEEEEEEEETTE-EEE
T ss_pred CEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEEEEEEEEEEECCCCCCcceeEEEecCcEEEEEeEEEEECCCCC-cee
Confidence 7999999999999999999999999765556999999999999998764 467899999999999999997553 478
Q ss_pred eeEEEEeCCCCcEEceecCcceEEeccEEEEEeecCCCceeeccCCC
Q 037008 167 SFGVTLAGAQGQVFGGIVAGKVTAASKVVVVAATFLNPLVHSLPISS 213 (270)
Q Consensus 167 hLHISLAg~dGqViGGHV~G~LIAAt~V~VV~gsF~~~~f~RlP~e~ 213 (270)
||||+|+ .+|+|+||||.+.+| .++||++.+|.+..|+|+||++
T Consensus 89 HlHi~l~-~~G~v~gGHl~~g~V--~t~Evvi~~~~~~~~~R~~D~e 132 (146)
T 2h6l_A 89 HIHVLLG-KDGEVYGGHLFSAEV--FACEVFVLPLSGEAPERAFDEQ 132 (146)
T ss_dssp EEEEEEE-EBTEEEEEEEEEEEE--EEEEEEEEECBSCCCBEEECTT
T ss_pred eEEEEEC-CCCcEEeeecCCCEE--EEEEEEEEEcCCCcEEEeECCC
Confidence 9999999 999999999998885 6899999999999999999975
No 5
>3htn_A Putative DNA binding protein; DUF269 family protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE 1PE; 1.50A {Bacteroides thetaiotaomicron vpi-5482} SCOP: d.290.1.0
Probab=99.95 E-value=4.5e-28 Score=203.29 Aligned_cols=121 Identities=11% Similarity=0.171 Sum_probs=108.8
Q ss_pred eEEEEEeCCCChHHHHHHHHHHhcCceEEEEeeeceeeeEEEecCCCCC---cccccccceeEEEeeeceecCCCCCCCC
Q 037008 90 KPVILEISAGADIIDSVITFARRNHAGISLVSASGSVSHVTLRQPISHA---HSLSLHGPFHLLSLSGSFYDSSSSSSPS 166 (270)
Q Consensus 90 ~phVLrL~pGeDIvesI~~fa~r~~~aicVLSa~GaVSnVTLR~p~s~~---~tvtleG~FEILSLSGT~s~~~~~~~~~ 166 (270)
|.+++||++||||+++|.+||+++++..++++++|++++|+||+++... ..++++|+|||+||+|||++.++. ++.
T Consensus 16 r~~~lrl~~Gedl~~~l~~~~~~~~i~~a~vs~iGsl~~~~l~~~~~~~~~y~~~~~~g~~EI~sl~Gti~~~dG~-p~~ 94 (149)
T 3htn_A 16 NKYIVSINNHTEIVKALNAFCKEKGILSGSINGIGAIGELTLRFFNPKTKAYDDKTFREQMEISNLTGNISSMNEQ-VYL 94 (149)
T ss_dssp TEEEEEECTTCBHHHHHHHHHHHHTCCSEEEEEEEEEEEEEEEEECTTTCCEEEEEECSCEEEEEEEEEEEEETTE-EEE
T ss_pred CEEEEEECCCChHHHHHHHHHHHcCCcEEEEEEEEEeeeEEEEccCCCcccceeEEecCceEEEEeEEEEEccCCC-ceE
Confidence 7899999999999999999999999877777999999999999987642 467899999999999999997553 578
Q ss_pred eeEEEEeCCCCcEEceecCcceEEeccEEEEEeecCCCceeeccCCC
Q 037008 167 SFGVTLAGAQGQVFGGIVAGKVTAASKVVVVAATFLNPLVHSLPISS 213 (270)
Q Consensus 167 hLHISLAg~dGqViGGHV~G~LIAAt~V~VV~gsF~~~~f~RlP~e~ 213 (270)
|||++|+|++|+|+||||..+ .+..++||+|..+.. .|.|.+|++
T Consensus 95 HlH~sl~~~~G~v~gGHl~~g-~V~~t~Ei~i~~~~~-~~~R~~D~~ 139 (149)
T 3htn_A 95 HLHITVGRSDYSALAGHLLSA-IQNGAGEFVVEDYSE-RISRTYNPD 139 (149)
T ss_dssp EEEEEEECTTSBEEEEEEEEE-EEEEEEEEEEEECCS-CCEEEEETT
T ss_pred EEEEEEECCCCCEEeEEeCCC-EEEEEEEEEEEEcCC-eeEEeeCCc
Confidence 999999999999999999987 666779999999987 899999975
No 6
>3hwu_A Putative DNA-binding protein; YP_299413.1, structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.30A {Ralstonia eutropha}
Probab=99.92 E-value=3.5e-25 Score=185.12 Aligned_cols=121 Identities=12% Similarity=0.119 Sum_probs=105.8
Q ss_pred eEEEEEeCCCChHHHHHHHHHHhcCceEEEEeeeceeeeEEEecCCCCC---cccccccceeEEEeeeceecCCCCCCCC
Q 037008 90 KPVILEISAGADIIDSVITFARRNHAGISLVSASGSVSHVTLRQPISHA---HSLSLHGPFHLLSLSGSFYDSSSSSSPS 166 (270)
Q Consensus 90 ~phVLrL~pGeDIvesI~~fa~r~~~aicVLSa~GaVSnVTLR~p~s~~---~tvtleG~FEILSLSGT~s~~~~~~~~~ 166 (270)
+.+++||++|+||+++|.+||+++++..++++++|++++++||+++... ...+++ +|||+||+||+++.++. ++.
T Consensus 13 ~~~~~rL~~Gedl~~~l~~~~~~~~i~~a~v~~iGsl~~~~l~~~~~~~~~y~~~~~~-~~Ei~sl~Gtis~~dG~-p~~ 90 (147)
T 3hwu_A 13 TGYLMVLRHGDNVLQNLEQLARDEHIPSASFVGIGFMSEATFGFYDFGRKQFDPKTYR-NVEMANMTGSIAWKEGK-PSI 90 (147)
T ss_dssp TEEEEEEETTCBHHHHHHHHHHHTTCSEEEEEEEEEEEEEEEEEEETTTTEEEEEEEE-EEEEEEEEEEEEEETTE-EEE
T ss_pred CEEEEEECCCChHHHHHHHHHHHcCCCEEEEEEEecccEEEEEeecCCcCccccEEec-CcEEEEEEEEEEcCCCC-ceE
Confidence 5689999999999999999999999877777999999999999987642 345788 89999999999986653 578
Q ss_pred eeEEEEeCCCCcEEceecCcceEEeccEEEEEeecCCCceeeccCCC
Q 037008 167 SFGVTLAGAQGQVFGGIVAGKVTAASKVVVVAATFLNPLVHSLPISS 213 (270)
Q Consensus 167 hLHISLAg~dGqViGGHV~G~LIAAt~V~VV~gsF~~~~f~RlP~e~ 213 (270)
|||++++|.+|+|+||||....+...++||++..+. ..|.|.+|++
T Consensus 91 HlH~~~~d~~g~v~GGHL~~g~V~~~t~Ei~i~~~~-~~~~R~~D~~ 136 (147)
T 3hwu_A 91 HAHGTVTDGTFQGAGGHLLGLTVGTGSCEITVTVYP-QRLDRFVDPE 136 (147)
T ss_dssp EEEEEEECTTCCEEEEEEEEEEEEEEEEEEEEEEES-SCCBEEEETT
T ss_pred EEEEEEECCCCcEEeeEecCcEEEeEeEEEEEEEcC-CeEEEEECCc
Confidence 999999999999999999888666558999998765 6999999874
No 7
>2ezd_A High mobility group protein HMG-I/HMG-Y; DNA binding protein, minor groove DNA binding, transcriptional CO-activator, architectural factor; HET: DNA; NMR {Homo sapiens} SCOP: j.10.1.1 PDB: 2eze_A*
Probab=97.64 E-value=2.4e-05 Score=48.55 Aligned_cols=17 Identities=59% Similarity=1.042 Sum_probs=14.9
Q ss_pred CCCCCCCCCCCCCCCCC
Q 037008 57 NATRKPRGRPPGSKNKP 73 (270)
Q Consensus 57 ~~~kr~RGRPpGSknKp 73 (270)
...|||||||.|||||.
T Consensus 2 ptpKrpRgRpkGSKNk~ 18 (26)
T 2ezd_A 2 PTPKRPRGRPKGSKNKG 18 (26)
T ss_dssp CSCCCCSSCCTTCCCCS
T ss_pred CCCcCCCCCcCcccccC
Confidence 35699999999999994
No 8
>4i95_A Putative uncharacterized protein; lipocalin-like domain of PF13924 family, structural genomics center for structural genomics, JCSG; HET: MSE; 1.81A {Bacteroides eggerthii} PDB: 4gzv_A
Probab=42.09 E-value=17 Score=30.58 Aligned_cols=34 Identities=21% Similarity=0.386 Sum_probs=29.1
Q ss_pred eEEEEeeeceeeeEEEecCCCCCcccccccceeEEE
Q 037008 116 GISLVSASGSVSHVTLRQPISHAHSLSLHGPFHLLS 151 (270)
Q Consensus 116 aicVLSa~GaVSnVTLR~p~s~~~tvtleG~FEILS 151 (270)
..=|||.-|+..|++++ ++ ....++..|.|||.|
T Consensus 37 ~lKIlSdDgtF~Ni~m~-~~-~~aiIt~~GtY~~~S 70 (142)
T 4i95_A 37 TFKVLSDDGRIVNFTIR-PG-TDAIITGYGTYRQIS 70 (142)
T ss_dssp EEEEECTTSEEEEEECC-TT-SCCEEEEEEEEEEEE
T ss_pred cEEEEcCCCcEEEEEEe-cC-CCcEEEEeEEEEecC
Confidence 56699999999999999 33 457889999999997
No 9
>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens}
Probab=37.95 E-value=24 Score=28.73 Aligned_cols=27 Identities=11% Similarity=0.175 Sum_probs=24.6
Q ss_pred eCCCChHHHHHHHHHHhcCceEEEEee
Q 037008 96 ISAGADIIDSVITFARRNHAGISLVSA 122 (270)
Q Consensus 96 L~pGeDIvesI~~fa~r~~~aicVLSa 122 (270)
+.+|++|.+.|.+..++-.+.++|||-
T Consensus 51 ~~~G~~i~~~i~~~I~~Sr~~IvVlS~ 77 (159)
T 1t3g_A 51 LIPTGTYIEDVARCVDQSKRLIIVMTP 77 (159)
T ss_dssp CCCCTTHHHHHHHHHHTBSEEEEEECH
T ss_pred ccCccchHHHHHHHHHHcCEEEEEEcc
Confidence 679999999999999888899999985
No 10
>1xv2_A ALDC, hypothetical protein, similar to alpha- acetolactate decarboxylase; structural genomics, MCSG; 2.00A {Staphylococcus aureus subsp} SCOP: d.290.1.1
Probab=31.28 E-value=1.1e+02 Score=27.23 Aligned_cols=107 Identities=14% Similarity=0.172 Sum_probs=61.3
Q ss_pred CChHHHHHHHHHHhcCceEEEEeeeceeeeEEEecCCCC---Cc----ccccccceeEEEeeece----ecCCCCC-CCC
Q 037008 99 GADIIDSVITFARRNHAGISLVSASGSVSHVTLRQPISH---AH----SLSLHGPFHLLSLSGSF----YDSSSSS-SPS 166 (270)
Q Consensus 99 GeDIvesI~~fa~r~~~aicVLSa~GaVSnVTLR~p~s~---~~----tvtleG~FEILSLSGT~----s~~~~~~-~~~ 166 (270)
-+++-+.|.+.. ...-.+-+-..|..++|+.|--... +. .+.-+-.|+.--.+||+ +|.-.+. ...
T Consensus 96 ~~~l~~~i~~~~--s~N~f~airi~G~F~~v~~R~vp~Q~~Py~~l~e~~~~Q~~f~~~~v~GTivGF~tP~~~~Gi~v~ 173 (237)
T 1xv2_A 96 DDVFAQIKNEML--SENLFSAVKIYGTFKHMHVRMMPAQQPPYTRLIDSARRQPEEKRQDIRGAIVGFFTPELFHGVGSA 173 (237)
T ss_dssp HHHHHHHHHHSS--CTTSCEEEEEEEEEEEEEEECCCCCCSSCCCTHHHHTTCCEEEEEEEEEEEEEEEECGGGBTTBCS
T ss_pred HHHHHHHHHhhh--ccccEEEEEEEEEeCeEEEEecCCCCCCCCCHHHHhcCCceEEEeccEEEEEEEecchhhcccCCc
Confidence 344444444443 3345778889999999999976422 11 11223346666666664 5552111 124
Q ss_pred eeEEEEeCCCCcEEceecCcceEEeccEEEEEeecCCCceeeccC
Q 037008 167 SFGVTLAGAQGQVFGGIVAGKVTAASKVVVVAATFLNPLVHSLPI 211 (270)
Q Consensus 167 hLHISLAg~dGqViGGHV~G~LIAAt~V~VV~gsF~~~~f~RlP~ 211 (270)
++|+-+-+.| +-+||||..--+....+++ +.+.+ ---++|.
T Consensus 174 G~HlHFisdD-r~~GGHVldf~~~~~~~~~--~~~~~-~~l~lP~ 214 (237)
T 1xv2_A 174 GFHIHFADDE-RAYGGHVLDFEVDDVVVEI--QNFET-FQQHFPV 214 (237)
T ss_dssp EEEEEEEETT-SSCEEEEEEEEEEEEEEEE--EECSE-EEEECCT
T ss_pred eeEEEEEcCC-CCCCcceEEEEecceEEEE--eeccc-EEEECCC
Confidence 5777776654 4499999877665554444 34442 2336776
No 11
>1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein; 2.80A {Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A
Probab=29.92 E-value=31 Score=27.61 Aligned_cols=28 Identities=25% Similarity=0.382 Sum_probs=25.1
Q ss_pred eCCCChHHHHHHHHHHhcCceEEEEeee
Q 037008 96 ISAGADIIDSVITFARRNHAGISLVSAS 123 (270)
Q Consensus 96 L~pGeDIvesI~~fa~r~~~aicVLSa~ 123 (270)
+.+|+++.+.|.+-.++-.+.++|||-.
T Consensus 44 ~~~G~~~~~~i~~~i~~Sr~~I~VlS~~ 71 (149)
T 1fyx_A 44 FIHGKWIIDNIIDSIEKSHKTVFVLSEN 71 (149)
T ss_dssp CCSSSCHHHHHHHHHHHEEEEEEEECHH
T ss_pred CCCchhHHHHHHHHHHHcCEEEEEeCcc
Confidence 7899999999999999888999999853
No 12
>2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity, immune response, leucine-rich repeat, glycoprotein, transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A
Probab=26.88 E-value=35 Score=28.44 Aligned_cols=27 Identities=19% Similarity=0.461 Sum_probs=24.4
Q ss_pred eCCCChHHHHHHHHHHhcCceEEEEee
Q 037008 96 ISAGADIIDSVITFARRNHAGISLVSA 122 (270)
Q Consensus 96 L~pGeDIvesI~~fa~r~~~aicVLSa 122 (270)
+.+|++|.+.|.+..++-.+.++|||-
T Consensus 74 ~~~G~~i~~~i~~aI~~Sr~~IvVlS~ 100 (178)
T 2j67_A 74 FDPGKSISENIVSFIEKSYKSIFVLSP 100 (178)
T ss_dssp CCTTSCHHHHHHHHHHTEEEEEEEECH
T ss_pred CCCCccHHHHHHHHHHhCCEEEEEecc
Confidence 779999999999999888889999985
No 13
>4gzv_A Hypothetical protein; AN eight-stranded beta barrel, lipocalin family, structural joint center for structural genomics, JCSG; 1.95A {Bacteroides ovatus}
Probab=23.10 E-value=54 Score=27.49 Aligned_cols=34 Identities=15% Similarity=0.268 Sum_probs=28.0
Q ss_pred eEEEEeeeceeeeEEEecCCCCCcccccccceeEEE
Q 037008 116 GISLVSASGSVSHVTLRQPISHAHSLSLHGPFHLLS 151 (270)
Q Consensus 116 aicVLSa~GaVSnVTLR~p~s~~~tvtleG~FEILS 151 (270)
..=|||.-|+..|++++.-. ..+++..|.||+.|
T Consensus 37 ~~KIlS~DgtF~N~~m~~~~--~aiIt~yGtY~l~S 70 (142)
T 4gzv_A 37 TFKVLSDDGRIVNFTIIPGA--DAIITGYGTYKQLT 70 (142)
T ss_dssp EEEEECTTSEEEEEECCTTS--CCEEEEEEEEEEEE
T ss_pred ceEEECCCCcEEEEEEeCCC--CcEEEEeEEEEecC
Confidence 46699999999999985422 46789999999997
No 14
>2ov6_A V-type ATP synthase subunit F; F subunit, A1AO ATP synthase, hydrolase; NMR {Methanosarcina mazei}
Probab=20.75 E-value=1.4e+02 Score=22.72 Aligned_cols=29 Identities=14% Similarity=0.162 Sum_probs=25.1
Q ss_pred EEEeCCCChHHHHHHHHHHhcCceEEEEe
Q 037008 93 ILEISAGADIIDSVITFARRNHAGISLVS 121 (270)
Q Consensus 93 VLrL~pGeDIvesI~~fa~r~~~aicVLS 121 (270)
++.+..-+|+.+++.+|+++...++.+++
T Consensus 23 v~~v~~~ee~~~~~~~l~~~~digIIlit 51 (101)
T 2ov6_A 23 VYETPDIPATESAVRSVLEDKSVGILVMH 51 (101)
T ss_dssp EEECCSTTTHHHHHHHHHHHTSSSEEEEE
T ss_pred eEecCCHHHHHHHHHHHhhCCCeEEEEEc
Confidence 45568889999999999999899988876
Done!