Query 037011
Match_columns 103
No_of_seqs 106 out of 216
Neff 3.6
Searched_HMMs 29240
Date Mon Mar 25 12:41:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037011.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037011hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2h9e_C Anti-coagulant protein 43.3 2.2 7.5E-05 27.5 -1.7 50 43-96 13-79 (84)
2 1xu2_R Tumor necrosis factor r 38.2 13 0.00046 22.5 1.4 21 48-68 19-39 (47)
3 2htq_A Neuraminidase; zanamivi 27.8 23 0.00078 29.5 1.5 17 77-93 187-203 (390)
4 4b7j_A Neuraminidase; hydrolas 27.4 18 0.00062 30.8 0.9 13 78-90 270-282 (469)
5 1nsc_A Neuraminidase; hydrolas 27.1 11 0.00037 31.5 -0.5 14 77-90 191-204 (390)
6 3tje_F Tumor necrosis factor r 25.3 25 0.00087 24.9 1.2 23 67-92 41-72 (156)
7 1v0z_A Neuraminidase; glycosid 22.0 19 0.00063 30.1 -0.0 17 77-93 188-204 (389)
8 1f8d_A Neuraminidase; hydrolas 21.8 19 0.00065 30.0 -0.0 17 77-93 188-204 (388)
9 4gdi_A Neuraminidase; influenz 20.1 20 0.00069 29.7 -0.2 16 77-92 190-205 (373)
10 1nmb_N N9 neuraminidase; compl 19.8 30 0.001 29.5 0.8 16 78-93 271-286 (470)
No 1
>2h9e_C Anti-coagulant protein C2; factor XA, NAPC2, hydrolase-hydrolase inhibitor C blood clotting; HET: DTY; 2.20A {Ancylostoma caninum} SCOP: g.22.1.1 PDB: 1cou_A
Probab=43.32 E-value=2.2 Score=27.54 Aligned_cols=50 Identities=32% Similarity=0.741 Sum_probs=21.5
Q ss_pred CCCch-HhhHHhhcC-------CC-cchH-HHHHHHhcccccccCCCCCCCC-------CCCCcccccccC
Q 037011 43 YQCPS-QCTRRCSQT-------QY-HKPC-MFFCQKCCAKCLCVPPGFYGNK-------AVCPCYNNWKTK 96 (103)
Q Consensus 43 ~~C~~-~C~~RCs~~-------~~-~~~C-~~~C~~CC~~C~CVP~Gt~gnk-------~~CpCY~~~~t~ 96 (103)
.+|++ +|...|+.. .+ ...| .+.|. .-|.|. +|++-|. ++|||+.+-...
T Consensus 13 ~~Cgs~~C~~tC~~~~~~~~~~~~~~~~C~~~~C~---~GC~C~-~G~vr~~~g~CV~~~~Cpc~~~~~~y 79 (84)
T 2h9e_C 13 DSCGSKECDKKCKYDGVEEEDDEEPNVPCLVRVCH---QDCVCE-EGFYRNKDDKCVSAEDCELDNMDFIY 79 (84)
T ss_dssp C-------CCBCCCTTCC----------------------CEEC-SSCEECTTCCEECHHHHGGGGEEEEC
T ss_pred CCCCCCccchhhCccccccccccCCCCCCCCCCCC---cCCCCC-CCeEEcCCCCEECHHHCCCCcCCeEC
Confidence 47999 999999863 22 3678 66665 578885 4888763 568887654443
No 2
>1xu2_R Tumor necrosis factor receptor superfamily member; TNFSF, cytokine, CRD, jelly-roll, cysteine-rich, H growth factor receptor complex; 2.35A {Homo sapiens} SCOP: g.24.1.2 PDB: 2kn1_A* 1oqd_K
Probab=38.16 E-value=13 Score=22.54 Aligned_cols=21 Identities=29% Similarity=0.733 Sum_probs=17.2
Q ss_pred HhhHHhhcCCCcchHHHHHHH
Q 037011 48 QCTRRCSQTQYHKPCMFFCQK 68 (103)
Q Consensus 48 ~C~~RCs~~~~~~~C~~~C~~ 68 (103)
-|..||+.++.+..|-.||..
T Consensus 19 pC~l~Cs~~~~p~tC~~fC~~ 39 (47)
T 1xu2_R 19 PCQLRCSSNTPPLTCQRYCNA 39 (47)
T ss_dssp EGGGTTTSSSCCGGGHHHHHC
T ss_pred chhcccCCCCCcchHHHHHhh
Confidence 388999977778899999963
No 3
>2htq_A Neuraminidase; zanamivir, hydrolase; HET: ZMR; 2.20A {Influenza a virus} PDB: 2ht7_A* 2ht8_A* 2ht5_A* 2htr_A* 2htu_A*
Probab=27.85 E-value=23 Score=29.54 Aligned_cols=17 Identities=29% Similarity=0.358 Sum_probs=13.7
Q ss_pred CCCCCCCCCCCCccccc
Q 037011 77 PPGFYGNKAVCPCYNNW 93 (103)
Q Consensus 77 P~Gt~gnk~~CpCY~~~ 93 (103)
.+|+..|.|||.||-+.
T Consensus 187 l~gsa~HiEECSCYp~~ 203 (390)
T 2htq_A 187 ISFNGGHIEECSCYPND 203 (390)
T ss_dssp ECCTTCCCCSCCCCEET
T ss_pred cCCCcCceEeeeEecCC
Confidence 46888899999999654
No 4
>4b7j_A Neuraminidase; hydrolase, NAI, NAIS, oseltamivir, zanamivir, antiviral resistance, immunocompromised, H275Y; HET: 5AX G39; 2.42A {Influenza a virus} PDB: 4b7m_A* 4b7n_A* 4b7q_A*
Probab=27.38 E-value=18 Score=30.78 Aligned_cols=13 Identities=23% Similarity=0.483 Sum_probs=5.7
Q ss_pred CCCCCCCCCCCcc
Q 037011 78 PGFYGNKAVCPCY 90 (103)
Q Consensus 78 ~Gt~gnk~~CpCY 90 (103)
+|+..|.|||.||
T Consensus 270 ~gs~~HiEECSCY 282 (469)
T 4b7j_A 270 NAPNYHYEECSCY 282 (469)
T ss_dssp CCTTCCCCSCEEE
T ss_pred CCCcccceeeeec
Confidence 3444444444444
No 5
>1nsc_A Neuraminidase; hydrolase(O-glycosyl); HET: NAG SIA; 1.70A {Influenza b virus} SCOP: b.68.1.1 PDB: 1a4g_A* 1nsb_A* 1a4q_A* 1nsd_A* 3k37_A* 3k36_A* 3k38_A* 3k39_A* 3k3a_A* 1b9v_A* 1b9s_A* 1b9t_A* 1inv_A* 1ivb_A* 1inf_A* 1vcj_A*
Probab=27.10 E-value=11 Score=31.47 Aligned_cols=14 Identities=29% Similarity=0.660 Sum_probs=11.5
Q ss_pred CCCCCCCCCCCCcc
Q 037011 77 PPGFYGNKAVCPCY 90 (103)
Q Consensus 77 P~Gt~gnk~~CpCY 90 (103)
.+|+..|.|||.||
T Consensus 191 lsgsaqHiEECSCY 204 (390)
T 1nsc_A 191 PTGRVEHTEECTCG 204 (390)
T ss_dssp CEESCSBCEEEEEE
T ss_pred cCCCccceEeeeec
Confidence 46778889999999
No 6
>3tje_F Tumor necrosis factor receptor superfamily member; agonistic antibody, FAB fragment, antibody-receptor complex, cysteine-rich domain, FAS, immune; HET: EDO; 1.93A {Homo sapiens} PDB: 3thm_F*
Probab=25.26 E-value=25 Score=24.85 Aligned_cols=23 Identities=39% Similarity=0.957 Sum_probs=14.4
Q ss_pred HHhcccccccCCCCCC--------CCCCC-Ccccc
Q 037011 67 QKCCAKCLCVPPGFYG--------NKAVC-PCYNN 92 (103)
Q Consensus 67 ~~CC~~C~CVP~Gt~g--------nk~~C-pCY~~ 92 (103)
+.||.+| |||+|= ..-+| ||-.+
T Consensus 41 ~~CC~~C---ppG~~v~~~Ct~~~~~t~C~pC~~g 72 (156)
T 3tje_F 41 QFCHKPC---PPGERKARDCTVNGDEPDCVPCQEG 72 (156)
T ss_dssp TTCSSCB---CTTEEESSCCCSSSCCCCEEECCTT
T ss_pred CeECCCC---CCCCeECCcCCCCCCCCcceeCCCC
Confidence 4567776 688772 13567 67665
No 7
>1v0z_A Neuraminidase; glycosidase, hydrolase; HET: NAG MAN BMA; 1.84A {Influenza a virus} PDB: 1w1x_A* 1w20_A* 1w21_A* 2cml_A*
Probab=22.03 E-value=19 Score=30.08 Aligned_cols=17 Identities=24% Similarity=0.448 Sum_probs=14.0
Q ss_pred CCCCCCCCCCCCccccc
Q 037011 77 PPGFYGNKAVCPCYNNW 93 (103)
Q Consensus 77 P~Gt~gnk~~CpCY~~~ 93 (103)
.+|+.+|.|||.||-+.
T Consensus 188 l~gs~~HiEECSCYp~~ 204 (389)
T 1v0z_A 188 LAGNAQHIEECSCYGAG 204 (389)
T ss_dssp CCSSCCCCEEEEEEEET
T ss_pred cCCCccceEEeeeccCC
Confidence 47888999999999764
No 8
>1f8d_A Neuraminidase; hydrolase, influenza protein, glycosylated PR amino-DANA, hydrolase-hydrolase inhibitor complex; HET: NAG MAN 9AM; 1.40A {Influenza a virus} SCOP: b.68.1.1 PDB: 1a14_N* 1bji_A* 1f8b_A* 1f8c_A* 1f8e_A* 1l7f_A* 1mwe_A* 1nmc_N* 1nnc_A* 2c4a_A* 2c4l_A* 2qwi_A* 2qwj_A* 2qwk_A* 7nn9_A* 1nca_N* 2qwc_A* 1l7h_A* 2qwb_A* 2qwa_A* ...
Probab=21.79 E-value=19 Score=30.02 Aligned_cols=17 Identities=24% Similarity=0.534 Sum_probs=13.8
Q ss_pred CCCCCCCCCCCCccccc
Q 037011 77 PPGFYGNKAVCPCYNNW 93 (103)
Q Consensus 77 P~Gt~gnk~~CpCY~~~ 93 (103)
.+|+..|.|||.||-+.
T Consensus 188 l~gs~~HiEECSCYp~~ 204 (388)
T 1f8d_A 188 LAGTAKHIEECSCYGER 204 (388)
T ss_dssp CCSSCCCCEEEEEEEET
T ss_pred cCCCcCceEeeeEecCC
Confidence 46888899999999654
No 9
>4gdi_A Neuraminidase; influenza virus, beta-propeller, EC viral protein; HET: NAG BMA FUC FUL GOL MAN; 1.95A {Influenza a virus} PDB: 4gez_A* 4fvk_A* 4gdj_A*
Probab=20.15 E-value=20 Score=29.72 Aligned_cols=16 Identities=19% Similarity=0.036 Sum_probs=12.7
Q ss_pred CCCCCCCCCCCCcccc
Q 037011 77 PPGFYGNKAVCPCYNN 92 (103)
Q Consensus 77 P~Gt~gnk~~CpCY~~ 92 (103)
.+|+..|.|||.||.+
T Consensus 190 l~~s~~HiEECSCYp~ 205 (373)
T 4gdi_A 190 LNTTGINFEYSTCYTI 205 (373)
T ss_dssp CCCTTCCCEEEEEEEE
T ss_pred cCCCCCCceeeeecCC
Confidence 3677889999999954
No 10
>1nmb_N N9 neuraminidase; complex (hydrolase-immunoglobulin), complex (hydrolase- immunoglobulin) complex; HET: NAG BMA MAN; 2.20A {Influenza a virus} SCOP: b.68.1.1
Probab=19.81 E-value=30 Score=29.50 Aligned_cols=16 Identities=25% Similarity=0.588 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCccccc
Q 037011 78 PGFYGNKAVCPCYNNW 93 (103)
Q Consensus 78 ~Gt~gnk~~CpCY~~~ 93 (103)
+|+..|.|||.||-+.
T Consensus 271 ~~~~~HiEECscy~~~ 286 (470)
T 1nmb_N 271 TGTAKHIEECSCYGEQ 286 (470)
T ss_dssp CSSCSCCCSCEEEEET
T ss_pred CCCcCceEeeeEecCC
Done!