Query 037011
Match_columns 103
No_of_seqs 106 out of 216
Neff 3.6
Searched_HMMs 13730
Date Mon Mar 25 12:41:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037011.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/037011hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2h9ec1 g.22.1.1 (C:6-83) Anti 65.9 0.26 1.9E-05 29.9 -1.7 53 43-96 8-74 (78)
2 d1jv2b5 g.3.11.6 (B:563-605) I 62.1 1.3 9.7E-05 24.9 1.1 19 70-88 21-40 (43)
3 d1xu2r_ g.24.1.2 (R:) Tumor ne 51.5 3 0.00022 22.7 1.4 20 48-67 16-35 (36)
4 d1exta1 g.24.1.1 (A:13-71) Tum 46.1 2.1 0.00015 24.7 0.1 25 68-95 16-49 (59)
5 d2aepa1 b.68.1.1 (A:83-469) In 32.2 4.4 0.00032 31.8 -0.1 18 76-93 185-202 (387)
6 d1hx2a_ g.22.1.2 (A:) BSTI {Fi 31.6 1 7.3E-05 26.2 -3.1 35 43-81 11-45 (60)
7 d1f8ea_ b.68.1.1 (A:) Influenz 29.0 5.4 0.00039 31.3 -0.1 17 77-93 188-204 (388)
8 d1jb0m_ f.23.19.1 (M:) Subunit 25.8 18 0.0013 18.9 1.7 15 1-16 1-17 (31)
9 d2heyr3 g.24.1.1 (R:29-82) Tum 22.4 5.8 0.00043 22.4 -0.8 25 67-94 12-44 (54)
10 d2c7na1 g.39.1.15 (A:18-73) Ra 20.8 7 0.00051 23.0 -0.7 16 79-94 7-26 (56)
No 1
>d2h9ec1 g.22.1.1 (C:6-83) Anticoagulant protein {Dog hookworm (Ancylostoma caninum) [TaxId: 29170]}
Probab=65.85 E-value=0.26 Score=29.91 Aligned_cols=53 Identities=26% Similarity=0.471 Sum_probs=23.4
Q ss_pred CCCch-HhhHHhhcCCCcchHHHHHHH------hcccccccCCCCCCCC-------CCCCcccccccC
Q 037011 43 YQCPS-QCTRRCSQTQYHKPCMFFCQK------CCAKCLCVPPGFYGNK-------AVCPCYNNWKTK 96 (103)
Q Consensus 43 ~~C~~-~C~~RCs~~~~~~~C~~~C~~------CC~~C~CVP~Gt~gnk-------~~CpCY~~~~t~ 96 (103)
.+|.+ .|...|+.-.....|...++. |=.-|.| |+|++-|. ++|||+.+=++.
T Consensus 8 ~~C~~~~C~~tC~~~~~~~~c~~~~~~~c~~~~CveGC~C-p~G~v~~~~g~CV~~~~CpC~~~g~~Y 74 (78)
T d2h9ec1 8 DSCGSKECDKKCKYDGVEEEDDEEPNVPCLVRVCHQDCVC-EEGFYRNKDDKCVSAEDCELDNMDFIY 74 (78)
T ss_dssp C-------CCBCCCTTCC-------------------CEE-CSSCEECTTCCEECHHHHGGGGEEEEC
T ss_pred cccCCCcCccccCCCcccccccccCCccccCCCCCCcCCC-CCCeeEcCCCCEEChhhCCcccCCEEc
Confidence 35665 477777665555555555443 3356778 89998554 468998765554
No 2
>d1jv2b5 g.3.11.6 (B:563-605) Integrin beta EGF-like domains {Human (Homo sapiens) [TaxId: 9606]}
Probab=62.08 E-value=1.3 Score=24.94 Aligned_cols=19 Identities=47% Similarity=1.494 Sum_probs=14.8
Q ss_pred cccccccCCCCCCCC-CCCC
Q 037011 70 CAKCLCVPPGFYGNK-AVCP 88 (103)
Q Consensus 70 C~~C~CVP~Gt~gnk-~~Cp 88 (103)
|++|.|--||.+|.. |+||
T Consensus 21 cG~C~C~~~gy~G~~Ce~Cp 40 (43)
T d1jv2b5 21 CGSCVCIQPGSYGDTCEKCP 40 (43)
T ss_dssp TTEEEECCSSCBSTTSCBCT
T ss_pred CCEeEeCCCCccCCccccCC
Confidence 789999777888876 5565
No 3
>d1xu2r_ g.24.1.2 (R:) Tumor necrosis factor receptor superfamily member 17, BCMA {Human (Homo sapiens) [TaxId: 9606]}
Probab=51.50 E-value=3 Score=22.72 Aligned_cols=20 Identities=30% Similarity=0.776 Sum_probs=17.7
Q ss_pred HhhHHhhcCCCcchHHHHHH
Q 037011 48 QCTRRCSQTQYHKPCMFFCQ 67 (103)
Q Consensus 48 ~C~~RCs~~~~~~~C~~~C~ 67 (103)
-|.-|||..+-+-.|.+||+
T Consensus 16 pc~lrcs~~~ppl~cq~yc~ 35 (36)
T d1xu2r_ 16 PCQLRCSSNTPPLTCQRYCN 35 (36)
T ss_dssp EGGGTTTSSSCCGGGHHHHH
T ss_pred cceeecCCCCCchhhhhhcc
Confidence 37889999888999999996
No 4
>d1exta1 g.24.1.1 (A:13-71) Tumor necrosis factor (TNF) receptor {Human (Homo sapiens) [TaxId: 9606]}
Probab=46.05 E-value=2.1 Score=24.68 Aligned_cols=25 Identities=40% Similarity=0.901 Sum_probs=16.8
Q ss_pred HhcccccccCCCCC------CC--CCCC-Cccccccc
Q 037011 68 KCCAKCLCVPPGFY------GN--KAVC-PCYNNWKT 95 (103)
Q Consensus 68 ~CC~~C~CVP~Gt~------gn--k~~C-pCY~~~~t 95 (103)
.||.+| |||+| +. ..+| ||-..--|
T Consensus 16 ~cC~~C---ppG~~~~~~Ct~~~~~t~C~pC~~gtyt 49 (59)
T d1exta1 16 ICCTKC---HKGTYLYNDCPGPGQDTDCRECESGSFT 49 (59)
T ss_dssp CEEECB---CTTEEEEECCSSTTSCCEEEECCTTEEC
T ss_pred cCCCCC---CCCCeecCccCCCCCCCEeccCCCCCcc
Confidence 467776 89988 42 4688 88766433
No 5
>d2aepa1 b.68.1.1 (A:83-469) Influenza neuraminidase {Influenza A virus, different strains [TaxId: 11320]}
Probab=32.19 E-value=4.4 Score=31.78 Aligned_cols=18 Identities=22% Similarity=0.541 Sum_probs=15.0
Q ss_pred cCCCCCCCCCCCCccccc
Q 037011 76 VPPGFYGNKAVCPCYNNW 93 (103)
Q Consensus 76 VP~Gt~gnk~~CpCY~~~ 93 (103)
.++|+.++.|||.||.+.
T Consensus 185 ~l~g~~~HiEECSCYp~~ 202 (387)
T d2aepa1 185 PLSGSAQHVEECSCYPRY 202 (387)
T ss_dssp ECCSSCCCCEEEEEEEET
T ss_pred ecCCCcCceEeeeecCCC
Confidence 367888999999999765
No 6
>d1hx2a_ g.22.1.2 (A:) BSTI {Fire-bellied toad (Bombina bombina) [TaxId: 8345]}
Probab=31.63 E-value=1 Score=26.17 Aligned_cols=35 Identities=26% Similarity=0.639 Sum_probs=25.5
Q ss_pred CCCchHhhHHhhcCCCcchHHHHHHHhcccccccCCCCC
Q 037011 43 YQCPSQCTRRCSQTQYHKPCMFFCQKCCAKCLCVPPGFY 81 (103)
Q Consensus 43 ~~C~~~C~~RCs~~~~~~~C~~~C~~CC~~C~CVP~Gt~ 81 (103)
.+|+++|..-|+.-.....|.+.|- .-|.| |+|+.
T Consensus 11 ~~C~s~Cp~tC~~~~~~~~C~~~C~---eGC~C-p~G~v 45 (60)
T d1hx2a_ 11 QTCASSCPKTCETRNKLVLCDKKCN---QRCGC-ISGTV 45 (60)
T ss_dssp ESSCCSSCCCTTTCCCSSSCSSCCC---SEEEE-CTTCE
T ss_pred CcccCCCccccCCCCCCCCCCCCCC---ccCCC-CCCEe
Confidence 4688888888887666666766443 55777 88876
No 7
>d1f8ea_ b.68.1.1 (A:) Influenza neuraminidase {Influenza A virus, different strains [TaxId: 11320]}
Probab=29.00 E-value=5.4 Score=31.28 Aligned_cols=17 Identities=24% Similarity=0.534 Sum_probs=14.1
Q ss_pred CCCCCCCCCCCCccccc
Q 037011 77 PPGFYGNKAVCPCYNNW 93 (103)
Q Consensus 77 P~Gt~gnk~~CpCY~~~ 93 (103)
++|+.++.|||.||.+.
T Consensus 188 l~g~~~HiEECSCYp~~ 204 (388)
T d1f8ea_ 188 LAGTAKHIEECSCYGER 204 (388)
T ss_dssp CCSSCCCCEEEEEEEET
T ss_pred cCCCcCceEeeeecCCC
Confidence 57888999999999763
No 8
>d1jb0m_ f.23.19.1 (M:) Subunit XII of photosystem I reaction centre, PsaM {Synechococcus elongatus [TaxId: 32046]}
Probab=25.78 E-value=18 Score=18.87 Aligned_cols=15 Identities=40% Similarity=0.503 Sum_probs=8.4
Q ss_pred Chhh--hHHHHHHHHHHH
Q 037011 1 MAKA--KLVFVLLVAALF 16 (103)
Q Consensus 1 MAma--k~l~~~LllsLl 16 (103)
|+++ .+++++ +|+||
T Consensus 1 m~lsdtqv~val-vial~ 17 (31)
T d1jb0m_ 1 MALTDTQVYVAL-VIALL 17 (31)
T ss_dssp CCCCHHHHHHHH-HHHHH
T ss_pred CCchHHHHHHHH-HHHHH
Confidence 6777 344444 66555
No 9
>d2heyr3 g.24.1.1 (R:29-82) Tumor necrosis factor receptor superfamily member 4, OX40L receptor {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.36 E-value=5.8 Score=22.42 Aligned_cols=25 Identities=36% Similarity=1.042 Sum_probs=15.6
Q ss_pred HHhcccccccCCCCC-------CCCCCC-Ccccccc
Q 037011 67 QKCCAKCLCVPPGFY-------GNKAVC-PCYNNWK 94 (103)
Q Consensus 67 ~~CC~~C~CVP~Gt~-------gnk~~C-pCY~~~~ 94 (103)
|.||.+| |||+| ...-+| ||-....
T Consensus 12 g~CC~~C---~pG~~~~~~Cs~~~~t~C~pC~~gty 44 (54)
T d2heyr3 12 DRCCHEC---RPGNGMVSRCSRSQNTVCRPCGPGFY 44 (54)
T ss_dssp TEEEECB---CTTEEEEECCCSSCCCEEEECCTTEE
T ss_pred CeECCCC---CCCCeEcCcCCCCCCCeeccCcCCCc
Confidence 5677776 78876 344567 6655543
No 10
>d2c7na1 g.39.1.15 (A:18-73) RabGEF1 (Rabex-5), ubiquitin-binding domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.80 E-value=7 Score=23.03 Aligned_cols=16 Identities=38% Similarity=1.109 Sum_probs=11.6
Q ss_pred CCCCC---CCCC-Ccccccc
Q 037011 79 GFYGN---KAVC-PCYNNWK 94 (103)
Q Consensus 79 Gt~gn---k~~C-pCY~~~~ 94 (103)
|+||| .+.| .||++..
T Consensus 7 GFyG~~~~~g~CSkCyr~~~ 26 (56)
T d2c7na1 7 GYYGNPAWQGFCSKCWREEY 26 (56)
T ss_dssp SSCCCGGGTTCCHHHHHHHH
T ss_pred CCCCCcccCCcchHHHHHHH
Confidence 66775 4789 5999864
Done!