BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037013
(128 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3FAC|A Chain A, Crystal Structure Of Rhodobacter Sphaeroides Protein
Rsp_2168. Northeast Structural Genomics Target Rhr83.
pdb|3FAC|B Chain B, Crystal Structure Of Rhodobacter Sphaeroides Protein
Rsp_2168. Northeast Structural Genomics Target Rhr83.
pdb|3FAC|C Chain C, Crystal Structure Of Rhodobacter Sphaeroides Protein
Rsp_2168. Northeast Structural Genomics Target Rhr83.
pdb|3FAC|D Chain D, Crystal Structure Of Rhodobacter Sphaeroides Protein
Rsp_2168. Northeast Structural Genomics Target Rhr83.
pdb|3FAC|E Chain E, Crystal Structure Of Rhodobacter Sphaeroides Protein
Rsp_2168. Northeast Structural Genomics Target Rhr83.
pdb|3FAC|F Chain F, Crystal Structure Of Rhodobacter Sphaeroides Protein
Rsp_2168. Northeast Structural Genomics Target Rhr83.
pdb|3FAC|G Chain G, Crystal Structure Of Rhodobacter Sphaeroides Protein
Rsp_2168. Northeast Structural Genomics Target Rhr83.
pdb|3FAC|H Chain H, Crystal Structure Of Rhodobacter Sphaeroides Protein
Rsp_2168. Northeast Structural Genomics Target Rhr83
Length = 118
Score = 55.5 bits (132), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 52/106 (49%), Gaps = 5/106 (4%)
Query: 9 KGGCRCRKLRWRVRAPRS-VEAWKCNCSDCSMRGNVHFTVAPENFELLGNSEEFLTTHTF 67
KG C C + V +A +C+CS C RG + T + ++ +E LT + F
Sbjct: 2 KGTCHCGAVEIEVELLNGFADARRCDCSFCRRRGAIAATARLSDLRVVRGAEN-LTLYQF 60
Query: 68 GTGTAKHVFCKVCGITSFYVPRGTPN--GVAVT-FRGVDPGTLSHV 110
GT TAKH FC+ CGI + + R P GV V GV+P L V
Sbjct: 61 GTRTAKHWFCRTCGIYTHHQRRSNPEEYGVNVAILEGVNPRDLGEV 106
>pdb|1E6Y|C Chain C, Methyl-Coenzyme M Reductase From Methanosarcina Barkeri
pdb|1E6Y|F Chain F, Methyl-Coenzyme M Reductase From Methanosarcina Barkeri
Length = 247
Score = 29.3 bits (64), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 12/18 (66%), Positives = 14/18 (77%)
Query: 95 VAVTFRGVDPGTLSHVEI 112
A+ FRGVDPGTLS +I
Sbjct: 105 AAINFRGVDPGTLSGRQI 122
>pdb|1RZI|A Chain A, Crystal Structure Of Human Anti-Hiv-1 Gp120-Reactive
Antibody 47e Fab
pdb|1RZI|C Chain C, Crystal Structure Of Human Anti-Hiv-1 Gp120-Reactive
Antibody 47e Fab
pdb|1RZI|E Chain E, Crystal Structure Of Human Anti-Hiv-1 Gp120-Reactive
Antibody 47e Fab
pdb|1RZI|G Chain G, Crystal Structure Of Human Anti-Hiv-1 Gp120-Reactive
Antibody 47e Fab
pdb|1RZI|I Chain I, Crystal Structure Of Human Anti-Hiv-1 Gp120-Reactive
Antibody 47e Fab
pdb|1RZI|K Chain K, Crystal Structure Of Human Anti-Hiv-1 Gp120-Reactive
Antibody 47e Fab
pdb|1RZI|M Chain M, Crystal Structure Of Human Anti-Hiv-1 Gp120-Reactive
Antibody 47e Fab
pdb|1RZI|O Chain O, Crystal Structure Of Human Anti-Hiv-1 Gp120-Reactive
Antibody 47e Fab
Length = 212
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 21/43 (48%)
Query: 46 TVAPENFELLGNSEEFLTTHTFGTGTAKHVFCKVCGITSFYVP 88
++ PE+F + + T+HTFG GT + V + F P
Sbjct: 76 SLQPEDFATYYCQQSYSTSHTFGQGTKLEIKRTVAAPSVFIFP 118
>pdb|1XDW|A Chain A, Nad+-Dependent (R)-2-Hydroxyglutarate Dehydrogenase From
Acidaminococcus Fermentans
Length = 331
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 19/37 (51%)
Query: 60 EFLTTHTFGTGTAKHVFCKVCGITSFYVPRGTPNGVA 96
+++ T T GT + K G +VPR +PN +A
Sbjct: 71 KYILTRTAGTDHIDKEYAKELGFPMAFVPRYSPNAIA 107
>pdb|1Y5K|B Chain B, T-to-t(high) Quaternary Transitions In Human Hemoglobin:
Betad99a Deoxy Low-salt (10 Test Sets)
pdb|1Y5K|D Chain D, T-to-t(high) Quaternary Transitions In Human Hemoglobin:
Betad99a Deoxy Low-salt (10 Test Sets)
Length = 146
Score = 27.7 bits (60), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/22 (59%), Positives = 14/22 (63%)
Query: 47 VAPENFELLGNSEEFLTTHTFG 68
VAPENF LLGN + H FG
Sbjct: 98 VAPENFRLLGNVLVCVLAHHFG 119
>pdb|2RAO|B Chain B, X Ray Crystal Structure Of Rabbit Hemoglobin (oxy Form) At
2.0 Angstrom Resolution
pdb|2RAO|D Chain D, X Ray Crystal Structure Of Rabbit Hemoglobin (oxy Form) At
2.0 Angstrom Resolution
Length = 146
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 14/22 (63%)
Query: 47 VAPENFELLGNSEEFLTTHTFG 68
V PENF LLGN + +H FG
Sbjct: 98 VDPENFRLLGNVLVIVLSHHFG 119
>pdb|3LQD|B Chain B, Crystal Structure Determination Of Lepus Europaeus 2.8 A
Resolution
pdb|3LQD|D Chain D, Crystal Structure Determination Of Lepus Europaeus 2.8 A
Resolution
Length = 146
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 14/22 (63%)
Query: 47 VAPENFELLGNSEEFLTTHTFG 68
V PENF LLGN + +H FG
Sbjct: 98 VDPENFRLLGNVLVIVLSHHFG 119
>pdb|3MC8|A Chain A, Potra1-3 Of The Periplasmic Domain Of Omp85 From Anabaena
pdb|3MC9|A Chain A, Potra1-2 Of The Periplasmic Domain Of Omp85 From Anabaena
pdb|3MC9|B Chain B, Potra1-2 Of The Periplasmic Domain Of Omp85 From Anabaena
Length = 316
Score = 27.3 bits (59), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 19/39 (48%)
Query: 88 PRGTPNGVAVTFRGVDPGTLSHVEIKHYDGHNWESSLDQ 126
P TP GV V+F LS VEI+ G N S L Q
Sbjct: 121 PEDTPLGVRVSFIVQPNPVLSKVEIQANPGTNVPSVLPQ 159
>pdb|4E36|A Chain A, Crystal Structure Of The Human Endoplasmic Reticulum
Aminopeptidase 2 Variant N392k
pdb|4E36|B Chain B, Crystal Structure Of The Human Endoplasmic Reticulum
Aminopeptidase 2 Variant N392k
Length = 967
Score = 26.9 bits (58), Expect = 2.9, Method: Composition-based stats.
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 32 CNCSDCSMRGNVHFTVAPENFELLGNSEEF 61
C CS S+ + HFT P F + N E F
Sbjct: 33 CICSQFSVPSSYHFTEDPGAFPVATNGERF 62
>pdb|3SE6|A Chain A, Crystal Structure Of The Human Endoplasmic Reticulum
Aminopeptidase 2
pdb|3SE6|B Chain B, Crystal Structure Of The Human Endoplasmic Reticulum
Aminopeptidase 2
Length = 967
Score = 26.9 bits (58), Expect = 2.9, Method: Composition-based stats.
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 32 CNCSDCSMRGNVHFTVAPENFELLGNSEEF 61
C CS S+ + HFT P F + N E F
Sbjct: 33 CICSQFSVPSSYHFTEDPGAFPVATNGERF 62
>pdb|3HRW|B Chain B, Crystal Structure Of Hemoglobin From Mouse (Mus
Musculus)at 2.8
pdb|3HRW|D Chain D, Crystal Structure Of Hemoglobin From Mouse (Mus
Musculus)at 2.8
Length = 146
Score = 26.6 bits (57), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 18/38 (47%), Gaps = 3/38 (7%)
Query: 47 VAPENFELLGNSEEFLTTHTFG---TGTAKHVFCKVCG 81
V PENF LLGN + H G T A+ F KV
Sbjct: 98 VDPENFRLLGNMIVIVLGHHLGKDFTPAAQAAFQKVVA 135
>pdb|2ABJ|A Chain A, Crystal Structure Of Human Branched Chain Amino Acid
Transaminase In A Complex With An Inhibitor,
C16h10n2o4f3scl, And Pyridoxal 5' Phosphate.
pdb|2ABJ|D Chain D, Crystal Structure Of Human Branched Chain Amino Acid
Transaminase In A Complex With An Inhibitor,
C16h10n2o4f3scl, And Pyridoxal 5' Phosphate.
pdb|2ABJ|G Chain G, Crystal Structure Of Human Branched Chain Amino Acid
Transaminase In A Complex With An Inhibitor,
C16h10n2o4f3scl, And Pyridoxal 5' Phosphate.
pdb|2ABJ|J Chain J, Crystal Structure Of Human Branched Chain Amino Acid
Transaminase In A Complex With An Inhibitor,
C16h10n2o4f3scl, And Pyridoxal 5' Phosphate
Length = 366
Score = 26.6 bits (57), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 10/19 (52%), Positives = 11/19 (57%)
Query: 24 PRSVEAWKCNCSDCSMRGN 42
P+ V AWK DC M GN
Sbjct: 188 PKYVRAWKGGTGDCKMGGN 206
>pdb|2COG|A Chain A, Crystal Structure Of Oxidized Human Cytosolic
Branched-Chain Aminotransferase Complexed With
4-Methylvalerate
pdb|2COG|B Chain B, Crystal Structure Of Oxidized Human Cytosolic
Branched-Chain Aminotransferase Complexed With
4-Methylvalerate
pdb|2COI|A Chain A, Crystal Structure Of Oxidized Human Cytosolic
Branched-Chain Aminotransferase Complexed With
Gabapentin
pdb|2COI|B Chain B, Crystal Structure Of Oxidized Human Cytosolic
Branched-Chain Aminotransferase Complexed With
Gabapentin
pdb|2COJ|A Chain A, Crystal Structure Of Reduced Human Cytosolic
Branched-Chain Aminotransferase Complexed With
Gabapentin
pdb|2COJ|B Chain B, Crystal Structure Of Reduced Human Cytosolic
Branched-Chain Aminotransferase Complexed With
Gabapentin
Length = 386
Score = 26.2 bits (56), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 10/19 (52%), Positives = 11/19 (57%)
Query: 24 PRSVEAWKCNCSDCSMRGN 42
P+ V AWK DC M GN
Sbjct: 208 PKYVRAWKGGTGDCKMGGN 226
>pdb|3DHT|B Chain B, The Crystal Structure Determination Of Rat (Rattus
Norvegicus) Hemoglobin
pdb|3HF4|B Chain B, Crystal Structure Of Rat Methemoglobin In R2 State
pdb|3HF4|F Chain F, Crystal Structure Of Rat Methemoglobin In R2 State
Length = 146
Score = 26.2 bits (56), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 21/42 (50%), Gaps = 4/42 (9%)
Query: 47 VAPENFELLGNSEEFLTTHTFG---TGTAKHVFCK-VCGITS 84
V PENF LLGN + H G T A+ F K V G+ S
Sbjct: 98 VDPENFRLLGNMIVIVLGHHLGKEFTPCAQAAFQKVVAGVAS 139
>pdb|1FHJ|B Chain B, Crystal Structure Of Aquomet Hemoglobin-I Of The Maned
Wolf (Chrysocyon Brachyurus) At 2.0 Resolution.
pdb|1FHJ|D Chain D, Crystal Structure Of Aquomet Hemoglobin-I Of The Maned
Wolf (Chrysocyon Brachyurus) At 2.0 Resolution.
pdb|2QLS|B Chain B, Crystal Structure Of Hemoglobin From Dog (Canis
Familiaris) At 3.5 Angstrom Resolution
pdb|2QLS|D Chain D, Crystal Structure Of Hemoglobin From Dog (Canis
Familiaris) At 3.5 Angstrom Resolution
pdb|3GOU|B Chain B, Crystal Structure Of Dog (Canis Familiaris) Hemoglobin
pdb|3GOU|D Chain D, Crystal Structure Of Dog (Canis Familiaris) Hemoglobin
pdb|3PEL|B Chain B, Structure Of Greyhound Hemoglobin: Origin Of High Oxygen
Affinity
Length = 146
Score = 25.8 bits (55), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 14/22 (63%)
Query: 47 VAPENFELLGNSEEFLTTHTFG 68
V PENF+LLGN + H FG
Sbjct: 98 VDPENFKLLGNVLVCVLAHHFG 119
>pdb|2B7H|B Chain B, Hemoglobin From Cerdocyon Thous, A Canidae From Brazil, At
2.2 Angstroms Resolution
pdb|2B7H|D Chain D, Hemoglobin From Cerdocyon Thous, A Canidae From Brazil, At
2.2 Angstroms Resolution
Length = 146
Score = 25.8 bits (55), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 14/22 (63%)
Query: 47 VAPENFELLGNSEEFLTTHTFG 68
V PENF+LLGN + H FG
Sbjct: 98 VDPENFKLLGNVLVCVLAHHFG 119
>pdb|3SMP|A Chain A, Monoclinic Crystal Structure Of Human Pantothenate Kinase
1 Alpha
pdb|3SMP|B Chain B, Monoclinic Crystal Structure Of Human Pantothenate Kinase
1 Alpha
Length = 386
Score = 25.8 bits (55), Expect = 6.9, Method: Composition-based stats.
Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 4/48 (8%)
Query: 33 NCSDCSMRGNVHF----TVAPENFELLGNSEEFLTTHTFGTGTAKHVF 76
N + C +GN+HF + A F +G+ + F + HT T F
Sbjct: 86 NLTMCGRKGNLHFIRFPSCAMHRFIQMGSEKNFSSLHTTLCATGGGAF 133
>pdb|1YGF|B Chain B, T-To-T(High) Quaternary Transitions In Human Hemoglobin:
Betah97a Oxy (2mm Ihp, 20% Peg) (1 Test Set)
pdb|1YGF|D Chain D, T-To-T(High) Quaternary Transitions In Human Hemoglobin:
Betah97a Oxy (2mm Ihp, 20% Peg) (1 Test Set)
pdb|1Y5J|B Chain B, T-to-t(high) Quaternary Transitions In Human Hemoglobin:
Betah97a Deoxy Low-salt (1 Test Set)
pdb|1Y5J|D Chain D, T-to-t(high) Quaternary Transitions In Human Hemoglobin:
Betah97a Deoxy Low-salt (1 Test Set)
Length = 146
Score = 25.8 bits (55), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 13/24 (54%)
Query: 45 FTVAPENFELLGNSEEFLTTHTFG 68
V PENF LLGN + H FG
Sbjct: 96 LAVDPENFRLLGNVLVCVLAHHFG 119
>pdb|1GBV|B Chain B, (Alpha-Oxy, Beta-(C112g)deoxy) T-State Human Hemoglobin
pdb|1GBV|D Chain D, (Alpha-Oxy, Beta-(C112g)deoxy) T-State Human Hemoglobin
Length = 146
Score = 25.4 bits (54), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 13/22 (59%)
Query: 47 VAPENFELLGNSEEFLTTHTFG 68
V PENF LLGN + H FG
Sbjct: 98 VDPENFRLLGNVLVGVLAHHFG 119
>pdb|1GBU|B Chain B, Deoxy (Beta-(C93a,C112g)) Human Hemoglobin
pdb|1GBU|D Chain D, Deoxy (Beta-(C93a,C112g)) Human Hemoglobin
Length = 146
Score = 25.4 bits (54), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 13/22 (59%)
Query: 47 VAPENFELLGNSEEFLTTHTFG 68
V PENF LLGN + H FG
Sbjct: 98 VDPENFRLLGNVLVGVLAHHFG 119
>pdb|3D4X|B Chain B, Crystal Structure Determination Of Cat (Felis Silvestris
Catus) Hemoglobin At 2.2 Angstrom Resolution
pdb|3D4X|D Chain D, Crystal Structure Determination Of Cat (Felis Silvestris
Catus) Hemoglobin At 2.2 Angstrom Resolution
pdb|3GQP|B Chain B, Crystal Structure Determination Of Cat (Felis Silvestris
Catus) Hemoglobin At 2.0 Angstrom Resolution
pdb|3GQP|D Chain D, Crystal Structure Determination Of Cat (Felis Silvestris
Catus) Hemoglobin At 2.0 Angstrom Resolution
pdb|3GQR|B Chain B, Crystal Structure Determination Of Cat (Felis Silvestris
Catus) Hemoglobin At 2.4 Angstrom Resolution
pdb|3GQR|D Chain D, Crystal Structure Determination Of Cat (Felis Silvestris
Catus) Hemoglobin At 2.4 Angstrom Resolution
pdb|3GQR|F Chain F, Crystal Structure Determination Of Cat (Felis Silvestris
Catus) Hemoglobin At 2.4 Angstrom Resolution
pdb|3GQR|H Chain H, Crystal Structure Determination Of Cat (Felis Silvestris
Catus) Hemoglobin At 2.4 Angstrom Resolution
pdb|3GYS|B Chain B, Crystal Structure Determination Of Cat (Felis Silvestris
Catus) Hemoglobin At 2.9 Angstrom Resolution
pdb|3GYS|D Chain D, Crystal Structure Determination Of Cat (Felis Silvestris
Catus) Hemoglobin At 2.9 Angstrom Resolution
pdb|3GYS|F Chain F, Crystal Structure Determination Of Cat (Felis Silvestris
Catus) Hemoglobin At 2.9 Angstrom Resolution
pdb|3GYS|H Chain H, Crystal Structure Determination Of Cat (Felis Silvestris
Catus) Hemoglobin At 2.9 Angstrom Resolution
Length = 145
Score = 25.4 bits (54), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 13/22 (59%)
Query: 47 VAPENFELLGNSEEFLTTHTFG 68
V PENF LLGN + H FG
Sbjct: 97 VDPENFRLLGNVLVCVLAHHFG 118
>pdb|1NQP|B Chain B, Crystal Structure Of Human Hemoglobin E At 1.73 A
Resolution
pdb|1NQP|D Chain D, Crystal Structure Of Human Hemoglobin E At 1.73 A
Resolution
pdb|1YVQ|B Chain B, The Low Salt (Peg) Crystal Structure Of Co Hemoglobin E
(Betae26k) Approaching Physiological Ph (Ph 7.5)
pdb|1YVQ|D Chain D, The Low Salt (Peg) Crystal Structure Of Co Hemoglobin E
(Betae26k) Approaching Physiological Ph (Ph 7.5)
pdb|1YVT|B Chain B, The High Salt (Phosphate) Crystal Structure Of Co
Hemoglobin E (Glu26lys) At Physiological Ph (Ph 7.35)
pdb|3DUT|B Chain B, The High Salt (Phosphate) Crystal Structure Of Deoxy
Hemoglobin E (Glu26lys) At Physiological Ph (Ph 7.35)
pdb|3DUT|D Chain D, The High Salt (Phosphate) Crystal Structure Of Deoxy
Hemoglobin E (Glu26lys) At Physiological Ph (Ph 7.35)
Length = 146
Score = 25.4 bits (54), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 13/22 (59%)
Query: 47 VAPENFELLGNSEEFLTTHTFG 68
V PENF LLGN + H FG
Sbjct: 98 VDPENFRLLGNVLVCVLAHHFG 119
>pdb|1K1K|B Chain B, Structure Of Mutant Human Carbonmonoxyhemoglobin C (beta
E6k) At 2.0 Angstrom Resolution In Phosphate Buffer.
pdb|1M9P|B Chain B, Crystalline Human Carbonmonoxy Hemoglobin C Exhibits The
R2 Quaternary State At Neutral Ph In The Presence Of
Polyethylene Glycol: The 2.1 Angstrom Resolution Crystal
Structure
pdb|1M9P|D Chain D, Crystalline Human Carbonmonoxy Hemoglobin C Exhibits The
R2 Quaternary State At Neutral Ph In The Presence Of
Polyethylene Glycol: The 2.1 Angstrom Resolution Crystal
Structure
pdb|1YFF|B Chain B, Structure Of Human Carbonmonoxyhemoglobin C (beta E6k):
Two Quaternary States (r2 And R3) In One Crystal
pdb|1YFF|D Chain D, Structure Of Human Carbonmonoxyhemoglobin C (beta E6k):
Two Quaternary States (r2 And R3) In One Crystal
pdb|1YFF|F Chain F, Structure Of Human Carbonmonoxyhemoglobin C (beta E6k):
Two Quaternary States (r2 And R3) In One Crystal
pdb|1YFF|H Chain H, Structure Of Human Carbonmonoxyhemoglobin C (beta E6k):
Two Quaternary States (r2 And R3) In One Crystal
pdb|3S65|B Chain B, Structures And Oxygen Affinities Of Crystalline Human
Hemoglobin C (Beta6 Lys) In The R2 Quaternary Structures
pdb|3S65|D Chain D, Structures And Oxygen Affinities Of Crystalline Human
Hemoglobin C (Beta6 Lys) In The R2 Quaternary Structures
pdb|3S66|B Chain B, Structures And Oxygen Affinities Of Crystalline Human
Hemoglobin C (Beta6 Lys) In The R Quaternary Structures
Length = 146
Score = 25.4 bits (54), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 13/22 (59%)
Query: 47 VAPENFELLGNSEEFLTTHTFG 68
V PENF LLGN + H FG
Sbjct: 98 VDPENFRLLGNVLVCVLAHHFG 119
>pdb|1HBS|B Chain B, Refined Crystal Structure Of Deoxyhemoglobin S. I.
Restrained Least-Squares Refinement At 3.0-Angstroms
Resolution
pdb|1HBS|D Chain D, Refined Crystal Structure Of Deoxyhemoglobin S. I.
Restrained Least-Squares Refinement At 3.0-Angstroms
Resolution
pdb|1HBS|F Chain F, Refined Crystal Structure Of Deoxyhemoglobin S. I.
Restrained Least-Squares Refinement At 3.0-Angstroms
Resolution
pdb|1HBS|H Chain H, Refined Crystal Structure Of Deoxyhemoglobin S. I.
Restrained Least-Squares Refinement At 3.0-Angstroms
Resolution
pdb|2HBS|B Chain B, The High Resolution Crystal Structure Of Deoxyhemoglobin S
pdb|2HBS|D Chain D, The High Resolution Crystal Structure Of Deoxyhemoglobin S
pdb|2HBS|F Chain F, The High Resolution Crystal Structure Of Deoxyhemoglobin S
pdb|2HBS|H Chain H, The High Resolution Crystal Structure Of Deoxyhemoglobin S
pdb|1NEJ|B Chain B, Crystalline Human Carbonmonoxy Hemoglobin S (liganded
Sickle Cell Hemoglobin) Exhibits The R2 Quaternary State
At Neutral Ph In The Presence Of Polyethylene Glycol:
The 2.1 Angstrom Resolution Crystal Structure
pdb|1NEJ|D Chain D, Crystalline Human Carbonmonoxy Hemoglobin S (liganded
Sickle Cell Hemoglobin) Exhibits The R2 Quaternary State
At Neutral Ph In The Presence Of Polyethylene Glycol:
The 2.1 Angstrom Resolution Crystal Structure
pdb|3W4U|B Chain B, Human Zeta-2 Beta-2-s Hemoglobin
pdb|3W4U|D Chain D, Human Zeta-2 Beta-2-s Hemoglobin
pdb|3W4U|F Chain F, Human Zeta-2 Beta-2-s Hemoglobin
Length = 146
Score = 25.4 bits (54), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 13/22 (59%)
Query: 47 VAPENFELLGNSEEFLTTHTFG 68
V PENF LLGN + H FG
Sbjct: 98 VDPENFRLLGNVLVCVLAHHFG 119
>pdb|2YRS|B Chain B, Human Hemoglobin D Los Angeles: Crystal Structure
pdb|2YRS|D Chain D, Human Hemoglobin D Los Angeles: Crystal Structure
pdb|2YRS|K Chain K, Human Hemoglobin D Los Angeles: Crystal Structure
pdb|2YRS|O Chain O, Human Hemoglobin D Los Angeles: Crystal Structure
Length = 146
Score = 25.4 bits (54), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 13/22 (59%)
Query: 47 VAPENFELLGNSEEFLTTHTFG 68
V PENF LLGN + H FG
Sbjct: 98 VDPENFRLLGNVLVCVLAHHFG 119
>pdb|6HBW|B Chain B, Crystal Structure Of Deoxy-human Hemoglobin Beta6 Glu->trp
pdb|6HBW|D Chain D, Crystal Structure Of Deoxy-human Hemoglobin Beta6 Glu->trp
Length = 146
Score = 25.4 bits (54), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 13/22 (59%)
Query: 47 VAPENFELLGNSEEFLTTHTFG 68
V PENF LLGN + H FG
Sbjct: 98 VDPENFRLLGNVLVCVLAHHFG 119
>pdb|1CMY|B Chain B, The Mutation Beta99 Asp-Tyr Stabilizes Y-A New, Composite
Quaternary State Of Human Hemoglobin
pdb|1CMY|D Chain D, The Mutation Beta99 Asp-Tyr Stabilizes Y-A New, Composite
Quaternary State Of Human Hemoglobin
Length = 146
Score = 25.4 bits (54), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 13/22 (59%)
Query: 47 VAPENFELLGNSEEFLTTHTFG 68
V PENF LLGN + H FG
Sbjct: 98 VYPENFRLLGNVLVCVLAHHFG 119
>pdb|1Y4Q|B Chain B, T-To-T(High) Quaternary Transitions In Human Hemoglobin:
Betaf42a Deoxy Low-Salt (1 Test Set)
pdb|1Y4Q|D Chain D, T-To-T(High) Quaternary Transitions In Human Hemoglobin:
Betaf42a Deoxy Low-Salt (1 Test Set)
Length = 146
Score = 25.4 bits (54), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 13/22 (59%)
Query: 47 VAPENFELLGNSEEFLTTHTFG 68
V PENF LLGN + H FG
Sbjct: 98 VDPENFRLLGNVLVCVLAHHFG 119
>pdb|1Y4R|B Chain B, T-To-T(High) Quaternary Transitions In Human Hemoglobin:
Betaf45a Deoxy Low-Salt (1 Test Set)
pdb|1Y4R|D Chain D, T-To-T(High) Quaternary Transitions In Human Hemoglobin:
Betaf45a Deoxy Low-Salt (1 Test Set)
Length = 146
Score = 25.4 bits (54), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 13/22 (59%)
Query: 47 VAPENFELLGNSEEFLTTHTFG 68
V PENF LLGN + H FG
Sbjct: 98 VDPENFRLLGNVLVCVLAHHFG 119
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.136 0.459
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,501,138
Number of Sequences: 62578
Number of extensions: 178380
Number of successful extensions: 399
Number of sequences better than 100.0: 59
Number of HSP's better than 100.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 343
Number of HSP's gapped (non-prelim): 61
length of query: 128
length of database: 14,973,337
effective HSP length: 87
effective length of query: 41
effective length of database: 9,529,051
effective search space: 390691091
effective search space used: 390691091
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)