BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037013
(128 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9CXS4|CENPV_MOUSE Centromere protein V OS=Mus musculus GN=Cenpv PE=2 SV=2
Length = 252
Score = 101 bits (252), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 49/124 (39%), Positives = 70/124 (56%), Gaps = 1/124 (0%)
Query: 3 QDSVLHKGGCRCRKLRWRVRAPRSVEAWKCNCSDCSMRGNVHFTVAPENFELLGNSEEFL 62
Q V H GGC C +R+ V A + + CNCS C + N HF V F+LL +E +
Sbjct: 120 QGLVKHTGGCHCGAVRFEVWASADLHIFDCNCSICKKKQNRHFIVPASRFKLLKGAES-I 178
Query: 63 TTHTFGTGTAKHVFCKVCGITSFYVPRGTPNGVAVTFRGVDPGTLSHVEIKHYDGHNWES 122
TT+TF T A+H FCK CG+ SFY PR P G + +D GT+ V + ++G +WE
Sbjct: 179 TTYTFNTHKAQHTFCKRCGVQSFYTPRSNPGGFGIAPHCLDEGTVRSVVTEEFNGSDWER 238
Query: 123 SLDQ 126
++ +
Sbjct: 239 AMKE 242
>sp|Q7Z7K6|CENPV_HUMAN Centromere protein V OS=Homo sapiens GN=CENPV PE=1 SV=1
Length = 275
Score = 100 bits (249), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 48/124 (38%), Positives = 70/124 (56%), Gaps = 1/124 (0%)
Query: 3 QDSVLHKGGCRCRKLRWRVRAPRSVEAWKCNCSDCSMRGNVHFTVAPENFELLGNSEEFL 62
Q V H GGC C +R+ V A + + CNCS C + N HF V F+LL +E +
Sbjct: 143 QGLVKHTGGCHCGAVRFEVWASADLHIFDCNCSICKKKQNRHFIVPASRFKLLKGAEH-I 201
Query: 63 TTHTFGTGTAKHVFCKVCGITSFYVPRGTPNGVAVTFRGVDPGTLSHVEIKHYDGHNWES 122
TT+TF T A+H FCK CG+ SFY PR P G + +D GT+ + + ++G +WE
Sbjct: 202 TTYTFNTHKAQHTFCKRCGVQSFYTPRSNPGGFGIAPHCLDEGTVRSMVTEEFNGSDWEK 261
Query: 123 SLDQ 126
++ +
Sbjct: 262 AMKE 265
>sp|A0RVY6|RL5_CENSY 50S ribosomal protein L5P OS=Cenarchaeum symbiosum (strain A)
GN=rpl5p PE=3 SV=1
Length = 169
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 20/44 (45%)
Query: 85 FYVPRGTPNGVAVTFRGVDPGTLSHVEIKHYDGHNWESSLDQFS 128
F V +G P G AVT RG D G L+ + G S D F
Sbjct: 53 FGVRKGEPIGAAVTIRGEDAGALARRLFEAKGGQVKGRSFDDFG 96
>sp|Q6BS64|DUS3_DEBHA tRNA-dihydrouridine(47) synthase [NAD(P)(+)] OS=Debaryomyces
hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC
0083 / IGC 2968) GN=DUS3 PE=3 SV=1
Length = 622
Score = 31.6 bits (70), Expect = 1.7, Method: Composition-based stats.
Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 4/47 (8%)
Query: 48 APENFELLGNSEEFLTTH----TFGTGTAKHVFCKVCGITSFYVPRG 90
+ E E++G +F H +G G A+ C+ G T Y+P G
Sbjct: 513 STERLEMIGQYAKFAIEHWGSDEYGVGLARRFMCEFLGFTHRYIPVG 559
>sp|Q9Y5G1|PCDGF_HUMAN Protocadherin gamma-B3 OS=Homo sapiens GN=PCDHGB3 PE=2 SV=3
Length = 929
Score = 29.6 bits (65), Expect = 6.3, Method: Composition-based stats.
Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 4/62 (6%)
Query: 55 LGNSEEFLTTHTFGTGTAKHVFCKVCGITSFYVPRGTPNGVAVTFRGVDPGTLSHVEIKH 114
LG + + TH +G + C++ G F + + T N T+R V G L +I
Sbjct: 362 LGTAVALIKTHDLDSGFNGEILCQLKGNFPFKIVQDTKN----TYRLVTDGALDREQIPE 417
Query: 115 YD 116
Y+
Sbjct: 418 YN 419
>sp|Q920R4|GASP1_RAT G-protein coupled receptor-associated sorting protein 1 OS=Rattus
norvegicus GN=Gprasp1 PE=1 SV=1
Length = 1346
Score = 29.3 bits (64), Expect = 7.3, Method: Composition-based stats.
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 8/43 (18%)
Query: 15 RKLRWRVRAPRSVEA--WKCNCSDCSMRGNVHFTVAPENFELL 55
R++R ++A S +A W CNC C +R + E FE L
Sbjct: 1072 REIREHLKARESAQAENWSCNCIQCELR------IGSEEFEEL 1108
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.136 0.459
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,269,915
Number of Sequences: 539616
Number of extensions: 2113897
Number of successful extensions: 4288
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 4283
Number of HSP's gapped (non-prelim): 7
length of query: 128
length of database: 191,569,459
effective HSP length: 94
effective length of query: 34
effective length of database: 140,845,555
effective search space: 4788748870
effective search space used: 4788748870
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)