Query 037013
Match_columns 128
No_of_seqs 215 out of 1056
Neff 8.3
Searched_HMMs 29240
Date Mon Mar 25 12:44:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037013.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037013hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3fac_A Putative uncharacterize 100.0 1.6E-32 5.5E-37 181.2 7.5 108 9-120 2-114 (118)
2 1x6m_A GFA, glutathione-depend 100.0 2.1E-30 7E-35 184.5 6.6 116 2-120 20-150 (196)
3 3j20_Y 30S ribosomal protein S 92.4 0.083 2.8E-06 28.8 2.2 17 73-89 18-34 (50)
4 2k4x_A 30S ribosomal protein S 85.1 0.15 5E-06 28.4 -0.3 14 74-87 18-31 (55)
5 2con_A RUH-035 protein, NIN on 81.2 0.28 9.6E-06 29.3 -0.2 15 70-84 26-40 (79)
6 3h0g_I DNA-directed RNA polyme 65.4 3.1 0.0001 26.2 1.8 12 72-83 24-35 (113)
7 1twf_I B12.6, DNA-directed RNA 62.7 2.5 8.6E-05 27.0 1.0 14 74-87 4-17 (122)
8 3qt1_I DNA-directed RNA polyme 58.9 2.8 9.7E-05 27.3 0.7 18 71-88 21-38 (133)
9 2k3r_A Ribonuclease P protein 58.0 1.5 5.1E-05 28.2 -0.7 18 69-86 55-72 (123)
10 1x0t_A Ribonuclease P protein 57.3 1.5 5.2E-05 28.0 -0.8 18 69-86 60-77 (120)
11 2jrp_A Putative cytoplasmic pr 56.1 6.8 0.00023 23.3 2.0 14 72-85 29-42 (81)
12 3cng_A Nudix hydrolase; struct 55.0 3.6 0.00012 27.6 0.8 15 74-88 3-17 (189)
13 2lcq_A Putative toxin VAPC6; P 52.1 7 0.00024 25.8 1.9 15 74-88 148-162 (165)
14 3cxk_A Methionine-R-sulfoxide 50.2 14 0.00047 24.9 3.0 29 75-103 123-156 (164)
15 3hcg_A Peptide methionine sulf 49.5 13 0.00046 24.5 2.8 29 75-103 93-126 (146)
16 1l8d_A DNA double-strand break 49.0 6.1 0.00021 24.3 1.1 10 76-85 49-58 (112)
17 3e0o_A Peptide methionine sulf 46.8 16 0.00055 24.1 2.9 29 75-103 91-123 (144)
18 3mao_A Methionine-R-sulfoxide 45.4 9.7 0.00033 23.8 1.6 31 73-103 60-95 (105)
19 2lo3_A SAGA-associated factor 43.7 14 0.00047 19.2 1.7 18 70-87 13-30 (44)
20 2l1u_A MSRB2, methionine-R-sul 43.3 17 0.00058 24.0 2.6 31 73-103 92-126 (143)
21 2i5o_A DNA polymerase ETA; zin 43.1 12 0.00042 18.9 1.5 13 74-86 9-21 (39)
22 3hcj_A MSRB, peptide methionin 41.8 11 0.00039 25.1 1.6 29 75-103 100-132 (154)
23 1twf_L ABC10-alpha, DNA-direct 41.7 13 0.00046 21.3 1.7 14 76-89 47-60 (70)
24 3e0m_A Peptide methionine sulf 41.0 22 0.00074 26.5 3.1 29 75-103 259-292 (313)
25 1t2y_A Metallothionein, MT; pr 40.5 3.3 0.00011 19.2 -0.9 8 9-16 8-15 (26)
26 3h0g_L DNA-directed RNA polyme 40.2 15 0.00053 20.7 1.8 16 75-90 39-54 (63)
27 4ayb_P DNA-directed RNA polyme 37.5 32 0.0011 18.2 2.6 21 76-97 25-45 (48)
28 1zfo_A LAsp-1; LIM domain, zin 35.5 11 0.00038 17.8 0.6 12 76-87 5-16 (31)
29 1vq8_Z 50S ribosomal protein L 34.0 19 0.00067 21.3 1.6 16 73-88 26-41 (83)
30 2a20_A Regulating synaptic mem 32.2 13 0.00046 20.7 0.6 15 73-87 32-46 (62)
31 2fiy_A Protein FDHE homolog; F 31.6 60 0.002 23.9 4.2 73 10-88 183-267 (309)
32 3j21_j 50S ribosomal protein L 31.5 21 0.00073 21.7 1.5 17 72-88 6-22 (94)
33 3ga8_A HTH-type transcriptiona 31.4 24 0.00083 20.2 1.7 17 71-87 33-49 (78)
34 1vk6_A NADH pyrophosphatase; 1 31.4 16 0.00055 26.2 1.1 15 73-87 106-120 (269)
35 2jne_A Hypothetical protein YF 29.6 27 0.00093 21.5 1.7 17 70-86 57-73 (101)
36 1ryq_A DNA-directed RNA polyme 29.2 16 0.00055 21.0 0.6 12 73-84 22-33 (69)
37 1rxl_A AFAE-DSC, afimbrial adh 27.8 87 0.003 20.6 4.0 39 84-122 67-107 (156)
38 1vq8_3 50S ribosomal protein L 26.7 24 0.00081 21.5 1.1 16 72-87 6-21 (92)
39 2elu_A Zinc finger protein 406 26.4 11 0.00039 18.3 -0.3 10 32-41 10-19 (37)
40 2k5c_A Uncharacterized protein 26.0 26 0.00088 20.9 1.1 13 75-87 9-21 (95)
41 1pft_A TFIIB, PFTFIIBN; N-term 26.0 35 0.0012 17.6 1.6 15 75-89 6-21 (50)
42 2kv1_A Methionine-R-sulfoxide 25.8 31 0.0011 22.1 1.6 31 73-103 67-102 (124)
43 3na7_A HP0958; flagellar bioge 24.4 38 0.0013 23.9 2.0 16 74-89 222-237 (256)
44 1ut1_A DRAA, DR hemagglutinin 24.1 1.1E+02 0.0037 20.0 3.9 40 84-123 79-120 (148)
45 3o9x_A Uncharacterized HTH-typ 23.9 35 0.0012 21.1 1.6 16 72-87 34-49 (133)
46 2kao_A Methionine-R-sulfoxide 23.5 36 0.0012 21.8 1.5 31 73-103 67-102 (124)
47 1dxg_A Desulforedoxin; non-hem 23.2 69 0.0023 15.5 2.3 17 72-88 4-20 (36)
48 1k81_A EIF-2-beta, probable tr 23.0 27 0.00094 17.1 0.8 8 76-83 2-9 (36)
49 2zkr_2 60S ribosomal protein L 23.0 36 0.0012 20.9 1.4 16 72-87 14-29 (97)
50 3lpe_B DNA-directed RNA polyme 23.0 33 0.0011 19.0 1.1 8 76-83 15-22 (59)
51 4a18_C 60S ribosomal protein L 21.6 46 0.0016 20.8 1.7 16 72-87 7-22 (109)
52 2yvr_A Transcription intermedi 21.5 30 0.001 17.7 0.7 15 72-86 16-30 (50)
53 2k8d_A Peptide methionine sulf 21.4 36 0.0012 22.5 1.3 17 72-88 59-75 (151)
No 1
>3fac_A Putative uncharacterized protein; complete proteome, structural genomics, PSI-2, protein structure initiative; 2.50A {Rhodobacter sphaeroides 2}
Probab=99.97 E-value=1.6e-32 Score=181.24 Aligned_cols=108 Identities=33% Similarity=0.553 Sum_probs=89.1
Q ss_pred EEeeeCCCeEEEEEeC--CCCeeeecCCchhccCCceeEEEcCCCeEEccCCcccceeeeeCCceEeEEeCCCCCceEEe
Q 037013 9 KGGCRCRKLRWRVRAP--RSVEAWKCNCSDCSMRGNVHFTVAPENFELLGNSEEFLTTHTFGTGTAKHVFCKVCGITSFY 86 (128)
Q Consensus 9 ~G~C~CGav~~~~~~~--~~~~~~~ChC~~Crk~~g~~~~~~~~~~~i~~g~~~~l~~y~~s~~~~~r~FC~~CGs~l~~ 86 (128)
+|+||||+|+|+++++ |.. +..|||++|||.+++++.+|.++|+|++|+ +.++.|+++++.++|+||++||++||+
T Consensus 2 ~GsC~CGaV~~~v~~~~~p~~-~~~ChC~~Crk~g~~~~~~~~~~~~~~~g~-~~l~~y~~s~~~~~r~FC~~CGs~l~~ 79 (118)
T 3fac_A 2 KGTCHCGAVEIEVELLNGFAD-ARRCDCSFCRRRGAIAATARLSDLRVVRGA-ENLTLYQFGTRTAKHWFCRTCGIYTHH 79 (118)
T ss_dssp EEECSSSCCEEEECCTTTTTT-CBCCCSTTHHHHCCCEEEEEGGGEEEEECG-GGEEEECCTTSCSEEEEETTTCCEEEE
T ss_pred CeEeeCCCEEEEEEcCCCcCC-eeeeCchHhhccCCEEEEEcccceEEcCCh-hHceEEecCCCCEeeEECCCCCccccC
Confidence 7999999999999987 554 689999999999778889999999998884 779999977788899999999999999
Q ss_pred ccCCCCCeEEEEecccCCCC---CCceEEEEecCCCc
Q 037013 87 VPRGTPNGVAVTFRGVDPGT---LSHVEIKHYDGHNW 120 (128)
Q Consensus 87 ~~~~~~~~~~v~~g~ld~~~---~~~~~i~~~~~~~w 120 (128)
.....++.+.|++|+||+++ ++.+.| .|+++|
T Consensus 80 ~~~~~~~~~~V~~g~ld~~~~~~l~~~~~--~dG~~~ 114 (118)
T 3fac_A 80 QRRSNPEEYGVNVAILEGVNPRDLGEVPW--TDGVNH 114 (118)
T ss_dssp ECSSCTTEEEEEGGGBTTCCGGGGCSCCC--C-----
T ss_pred ccCCCCCEEEEEecccCCCChHHcccccc--cCCCCC
Confidence 87666888999999999865 344555 466654
No 2
>1x6m_A GFA, glutathione-dependent formaldehyde-activating ENZ; Zn-enzyme, 3_10 helix, lyase; 2.35A {Paracoccus denitrificans} SCOP: b.88.1.4 PDB: 1xa8_A*
Probab=99.96 E-value=2.1e-30 Score=184.55 Aligned_cols=116 Identities=18% Similarity=0.236 Sum_probs=98.3
Q ss_pred CCCceeEEEe---eeCC--CeEEEEEeCCCCeeeecCCchhccCCc----eeEEEcCCCeEEccCCcccceeeeeCCceE
Q 037013 2 DQDSVLHKGG---CRCR--KLRWRVRAPRSVEAWKCNCSDCSMRGN----VHFTVAPENFELLGNSEEFLTTHTFGTGTA 72 (128)
Q Consensus 2 ~~~~~~~~G~---C~CG--av~~~~~~~~~~~~~~ChC~~Crk~~g----~~~~~~~~~~~i~~g~~~~l~~y~~s~~~~ 72 (128)
++.+.+++|+ |+|| +|+|+++++|.. +..|||++|||.+| .++.+|+++|+|++|+ +.++.|. +++.+
T Consensus 20 ~~~~~~~~G~~lsC~CG~v~V~~~~~~~p~~-~~~ChCs~Crk~~Gs~f~~~~~vp~~~~~~~~G~-~~l~~y~-ss~~~ 96 (196)
T 1x6m_A 20 KPAQPGFAGGTLHCKCSTNPVRVAVRAQTAH-NHVCGCTKCWKPEGAIFSQVAVVGRDALEVLEGA-EKLEIVN-AEAPI 96 (196)
T ss_dssp CCCCTTCCCEEEECSCSSSCCEEEECSCCEE-EEEECCSSSCCCTTCSSEEEEEEEGGGEEEEECG-GGEEESC-TTSSE
T ss_pred CCCCccccCCCCEecCCCCeEEEEEecCCCC-eEecCcHHHhcccCCccEEEEEEehhHeEEecCC-CceEEEe-CCCCe
Confidence 4445678999 9999 999999988875 78999999999986 4678999999998884 7789995 78889
Q ss_pred eEEeCCCCCceEEeccCCC----CCeEEEEecccCCCCC--CceEEEEecCCCc
Q 037013 73 KHVFCKVCGITSFYVPRGT----PNGVAVTFRGVDPGTL--SHVEIKHYDGHNW 120 (128)
Q Consensus 73 ~r~FC~~CGs~l~~~~~~~----~~~~~v~~g~ld~~~~--~~~~i~~~~~~~w 120 (128)
+|+||++||++||+..... ++.+.|++|+||++.+ |..|||+.++.+|
T Consensus 97 ~r~FC~~CGs~l~~~~~~~~~~~~~~~~V~~g~lD~~~~~~P~~hif~~s~~~~ 150 (196)
T 1x6m_A 97 QRHRCRDCGVHMYGRIENRDHPFYGLDFVHTELSDEDGWSAPEFAAFVSSIIES 150 (196)
T ss_dssp EEEEETTTCCEEEEEECCTTSTTTTEEEECGGGBSCCCCCCCCEEESGGGGGGG
T ss_pred eeEECCCCCCcCCcccccCCCCccceEEEEEeccCCcccCCCeEEEEecccccc
Confidence 9999999999999986543 3479999999998653 6899999997655
No 3
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=92.37 E-value=0.083 Score=28.82 Aligned_cols=17 Identities=35% Similarity=0.761 Sum_probs=13.2
Q ss_pred eEEeCCCCCceEEeccC
Q 037013 73 KHVFCKVCGITSFYVPR 89 (128)
Q Consensus 73 ~r~FC~~CGs~l~~~~~ 89 (128)
.+.||+.||+.++....
T Consensus 18 ~~k~CP~CG~~~fm~~~ 34 (50)
T 3j20_Y 18 KNKFCPRCGPGVFMADH 34 (50)
T ss_dssp SSEECSSSCSSCEEEEC
T ss_pred ecccCCCCCCceEEecC
Confidence 46899999998877643
No 4
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=85.07 E-value=0.15 Score=28.39 Aligned_cols=14 Identities=43% Similarity=0.961 Sum_probs=10.1
Q ss_pred EEeCCCCCceEEec
Q 037013 74 HVFCKVCGITSFYV 87 (128)
Q Consensus 74 r~FC~~CGs~l~~~ 87 (128)
+.|||.||+.++..
T Consensus 18 ~~fCPkCG~~~~ma 31 (55)
T 2k4x_A 18 HRFCPRCGPGVFLA 31 (55)
T ss_dssp SCCCTTTTTTCCCE
T ss_pred cccCcCCCCceeEe
Confidence 57888888876543
No 5
>2con_A RUH-035 protein, NIN one binding protein; ribosome, RNA binding protein, unknown function, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.41.15.1
Probab=81.23 E-value=0.28 Score=29.32 Aligned_cols=15 Identities=33% Similarity=0.817 Sum_probs=12.1
Q ss_pred ceEeEEeCCCCCceE
Q 037013 70 GTAKHVFCKVCGITS 84 (128)
Q Consensus 70 ~~~~r~FC~~CGs~l 84 (128)
....+.||+.||-..
T Consensus 26 ~~~~k~FCp~CGn~T 40 (79)
T 2con_A 26 SDMNRVFCGHCGNKT 40 (79)
T ss_dssp SCSSCCSCSSSCCSC
T ss_pred CCcccccccccCccc
Confidence 557789999999854
No 6
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=65.37 E-value=3.1 Score=26.21 Aligned_cols=12 Identities=17% Similarity=0.625 Sum_probs=7.8
Q ss_pred EeEEeCCCCCce
Q 037013 72 AKHVFCKVCGIT 83 (128)
Q Consensus 72 ~~r~FC~~CGs~ 83 (128)
..++.|++||-.
T Consensus 24 ~~~~~C~~C~y~ 35 (113)
T 3h0g_I 24 VLRLACRNCDYS 35 (113)
T ss_dssp CCCEECSSSCCE
T ss_pred eeEEECCCCCCe
Confidence 446777777753
No 7
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=62.75 E-value=2.5 Score=26.99 Aligned_cols=14 Identities=21% Similarity=0.539 Sum_probs=11.7
Q ss_pred EEeCCCCCceEEec
Q 037013 74 HVFCKVCGITSFYV 87 (128)
Q Consensus 74 r~FC~~CGs~l~~~ 87 (128)
-.||+.||+-|+-.
T Consensus 4 ~~FCp~CgnlL~~~ 17 (122)
T 1twf_I 4 FRFCRDCNNMLYPR 17 (122)
T ss_dssp CCBCSSSCCBCEEE
T ss_pred CCcccccCccCccc
Confidence 46999999999854
No 8
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=58.92 E-value=2.8 Score=27.29 Aligned_cols=18 Identities=17% Similarity=0.412 Sum_probs=13.8
Q ss_pred eEeEEeCCCCCceEEecc
Q 037013 71 TAKHVFCKVCGITSFYVP 88 (128)
Q Consensus 71 ~~~r~FC~~CGs~l~~~~ 88 (128)
.+.-.||++||+-|+-..
T Consensus 21 ~~~~~FCPeCgNmL~pke 38 (133)
T 3qt1_I 21 MTTFRFCRDCNNMLYPRE 38 (133)
T ss_dssp -CCCCBCTTTCCBCBCCB
T ss_pred ccCCeeCCCCCCEeeECc
Confidence 345689999999998764
No 9
>2k3r_A Ribonuclease P protein component 4; PFU RPP21, RNAse P, hydrolase, tRNA processing; NMR {Pyrococcus furiosus} PDB: 2ki7_B
Probab=57.95 E-value=1.5 Score=28.20 Aligned_cols=18 Identities=22% Similarity=0.325 Sum_probs=14.2
Q ss_pred CceEeEEeCCCCCceEEe
Q 037013 69 TGTAKHVFCKVCGITSFY 86 (128)
Q Consensus 69 ~~~~~r~FC~~CGs~l~~ 86 (128)
++...|.||..||+.+.-
T Consensus 55 p~~~KR~~Ck~C~s~LIP 72 (123)
T 2k3r_A 55 PRKWKRRYCKKCHAFLVP 72 (123)
T ss_dssp SSTTTTSBCTTTCCBCCB
T ss_pred CHHHHHHhccCCCCEeEC
Confidence 445778999999998753
No 10
>1x0t_A Ribonuclease P protein component 4; pyrococcus horikoshii OT3, hydrolase; 1.60A {Pyrococcus horikoshii} PDB: 2zae_B
Probab=57.33 E-value=1.5 Score=28.00 Aligned_cols=18 Identities=22% Similarity=0.340 Sum_probs=14.2
Q ss_pred CceEeEEeCCCCCceEEe
Q 037013 69 TGTAKHVFCKVCGITSFY 86 (128)
Q Consensus 69 ~~~~~r~FC~~CGs~l~~ 86 (128)
++...|.||..||+.|.-
T Consensus 60 p~~~KR~~Ck~C~s~LiP 77 (120)
T 1x0t_A 60 PRKWKRRYCKRCHTFLIP 77 (120)
T ss_dssp CTTTTTSBCTTTCCBCCB
T ss_pred CHHHHHHhccCCCCEeEC
Confidence 445778999999998753
No 11
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=56.14 E-value=6.8 Score=23.33 Aligned_cols=14 Identities=14% Similarity=0.342 Sum_probs=9.2
Q ss_pred EeEEeCCCCCceEE
Q 037013 72 AKHVFCKVCGITSF 85 (128)
Q Consensus 72 ~~r~FC~~CGs~l~ 85 (128)
....||++||.+|-
T Consensus 29 ~~~afCPeCgq~Le 42 (81)
T 2jrp_A 29 SLQALCPDCRQPLQ 42 (81)
T ss_dssp EEEEECSSSCSCCC
T ss_pred CCcccCcchhhHHH
Confidence 33458888887763
No 12
>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei structure initiative; 2.00A {Nitrosomonas europaea atcc 19718}
Probab=54.99 E-value=3.6 Score=27.57 Aligned_cols=15 Identities=27% Similarity=0.512 Sum_probs=12.0
Q ss_pred EEeCCCCCceEEecc
Q 037013 74 HVFCKVCGITSFYVP 88 (128)
Q Consensus 74 r~FC~~CGs~l~~~~ 88 (128)
..||+.||+.+-...
T Consensus 3 ~~~C~~CG~~~~~~~ 17 (189)
T 3cng_A 3 MKFCSQCGGEVILRI 17 (189)
T ss_dssp CCBCTTTCCBCEEEC
T ss_pred cccCchhCCcccccc
Confidence 469999999996643
No 13
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=52.10 E-value=7 Score=25.84 Aligned_cols=15 Identities=27% Similarity=0.583 Sum_probs=11.1
Q ss_pred EEeCCCCCceEEecc
Q 037013 74 HVFCKVCGITSFYVP 88 (128)
Q Consensus 74 r~FC~~CGs~l~~~~ 88 (128)
..||+.||+++-..+
T Consensus 148 ~~~Cp~CG~~~~~~~ 162 (165)
T 2lcq_A 148 GGVCPDCGSKVKLIP 162 (165)
T ss_dssp GGBCTTTCCBEEECC
T ss_pred CCcCCCCCCcceeCC
Confidence 459999999975433
No 14
>3cxk_A Methionine-R-sulfoxide reductase; structural genomics, MSRB, oxidoreductase, MIC labcard, PSI-2, protein structure initiative; 1.70A {Burkholderia pseudomallei strain} PDB: 3cez_A
Probab=50.23 E-value=14 Score=24.93 Aligned_cols=29 Identities=21% Similarity=0.291 Sum_probs=20.8
Q ss_pred EeCCCCCceEEeccCCCC-----CeEEEEecccC
Q 037013 75 VFCKVCGITSFYVPRGTP-----NGVAVTFRGVD 103 (128)
Q Consensus 75 ~FC~~CGs~l~~~~~~~~-----~~~~v~~g~ld 103 (128)
..|++||++|-+...+.| ..+-||..+|+
T Consensus 123 V~C~~Cg~HLGHVF~DGP~~ptg~RyCINS~sL~ 156 (164)
T 3cxk_A 123 VRCNQCGAHLGHVFEDGPRDKTGLRYCINSAALN 156 (164)
T ss_dssp EEETTTCCEEEEEESCSCTTTTSCEEEECGGGEE
T ss_pred EEeCCCCCccCcccCCCCCCCCCCEEeeceeeEe
Confidence 679999999988765444 35667665554
No 15
>3hcg_A Peptide methionine sulfoxide reductase MSRA/MSRB; PILB, methionine sulfoxide reductase B, reduced form, disulfide bond; 1.82A {Neisseria meningitidis serogroup A} SCOP: b.88.1.3 PDB: 3hch_A* 1l1d_A
Probab=49.46 E-value=13 Score=24.52 Aligned_cols=29 Identities=10% Similarity=-0.098 Sum_probs=20.7
Q ss_pred EeCCCCCceEEeccCCCC-----CeEEEEecccC
Q 037013 75 VFCKVCGITSFYVPRGTP-----NGVAVTFRGVD 103 (128)
Q Consensus 75 ~FC~~CGs~l~~~~~~~~-----~~~~v~~g~ld 103 (128)
..|++||+||-+...+.| ..+-||..+|+
T Consensus 93 V~C~~Cg~HLGHVF~DGP~~~tg~RyCiNS~sL~ 126 (146)
T 3hcg_A 93 VRSHAADSHLGHVFPDGPRDKGGLRYCINGASLK 126 (146)
T ss_dssp EEETTTCCEEEEEESCSCGGGTSCEEEECGGGEE
T ss_pred EEeCCCCCccCceeCCCCCCCCCCEEeeeeEEEE
Confidence 579999999988765433 35677766654
No 16
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=49.01 E-value=6.1 Score=24.34 Aligned_cols=10 Identities=40% Similarity=0.743 Sum_probs=8.7
Q ss_pred eCCCCCceEE
Q 037013 76 FCKVCGITSF 85 (128)
Q Consensus 76 FC~~CGs~l~ 85 (128)
-||.||+++-
T Consensus 49 ~CPvCgs~l~ 58 (112)
T 1l8d_A 49 KCPVCGRELT 58 (112)
T ss_dssp ECTTTCCEEC
T ss_pred CCCCCCCcCC
Confidence 4999999985
No 17
>3e0o_A Peptide methionine sulfoxide reductase MSRB; oxidoreductase; 2.60A {Bacillus subtilis} SCOP: b.88.1.3 PDB: 1xm0_A 2kzn_A
Probab=46.77 E-value=16 Score=24.09 Aligned_cols=29 Identities=10% Similarity=-0.042 Sum_probs=20.8
Q ss_pred EeCCCCCceEEeccCCCC----CeEEEEecccC
Q 037013 75 VFCKVCGITSFYVPRGTP----NGVAVTFRGVD 103 (128)
Q Consensus 75 ~FC~~CGs~l~~~~~~~~----~~~~v~~g~ld 103 (128)
..|++||+||-+...+.| ..+-||..+|+
T Consensus 91 V~C~~Cg~HLGHVF~DGP~ptg~RyCiNS~sL~ 123 (144)
T 3e0o_A 91 VRSRTADSHLGHVFNDGPGPNGLRYCINSAALR 123 (144)
T ss_dssp EEETTTCCEEEEEESCCSSTTCCEEEECGGGEE
T ss_pred EEcCCCCCccCCccCCCCCCCCCEeeeceeeEe
Confidence 689999999988765433 35667766654
No 18
>3mao_A Methionine-R-sulfoxide reductase B1; oxidoreductase, structural genomics consortium, SGC, cytoplasm, metal-binding, nucleus, selenocysteine, zinc; HET: MLI; 1.42A {Homo sapiens}
Probab=45.37 E-value=9.7 Score=23.78 Aligned_cols=31 Identities=16% Similarity=0.168 Sum_probs=21.3
Q ss_pred eEEeCCCCCceEEecc-CCCC----CeEEEEecccC
Q 037013 73 KHVFCKVCGITSFYVP-RGTP----NGVAVTFRGVD 103 (128)
Q Consensus 73 ~r~FC~~CGs~l~~~~-~~~~----~~~~v~~g~ld 103 (128)
.-..|++||+||-+.. .+.| ..+-||-..|+
T Consensus 60 tEV~C~~C~~HLGHVF~~DGP~ptg~RyCiNS~sL~ 95 (105)
T 3mao_A 60 LKVSCGKCGNGLGHEFLNDGPKPGQSRFSIFSSSLK 95 (105)
T ss_dssp EEEEETTTCCEEEEEETTCSSSTTCCEEEECGGGEE
T ss_pred EEEEeCCCCCccCcccCCCCcCCCCCEEeeCeeeEE
Confidence 4468999999998876 3322 35677766654
No 19
>2lo3_A SAGA-associated factor 73; zinc-finger, deubiquitination, transcription factor, SAGA CO transcription; NMR {Saccharomyces cerevisiae}
Probab=43.67 E-value=14 Score=19.17 Aligned_cols=18 Identities=17% Similarity=0.340 Sum_probs=14.0
Q ss_pred ceEeEEeCCCCCceEEec
Q 037013 70 GTAKHVFCKVCGITSFYV 87 (128)
Q Consensus 70 ~~~~r~FC~~CGs~l~~~ 87 (128)
+...+.-|..||.|+...
T Consensus 13 ~~~~YRvC~~CgkPi~ls 30 (44)
T 2lo3_A 13 KPIQYRVCEKCGKPLALT 30 (44)
T ss_dssp CCCCEEECTTTCCEEETT
T ss_pred ccccchhhcccCCcchHH
Confidence 446677899999999753
No 20
>2l1u_A MSRB2, methionine-R-sulfoxide reductase B2, mitochondria; methionine sulfoxide reductase, oxidoreductase; NMR {Mus musculus}
Probab=43.34 E-value=17 Score=23.95 Aligned_cols=31 Identities=19% Similarity=0.249 Sum_probs=22.5
Q ss_pred eEEeCCCCCceEEeccCCCC----CeEEEEecccC
Q 037013 73 KHVFCKVCGITSFYVPRGTP----NGVAVTFRGVD 103 (128)
Q Consensus 73 ~r~FC~~CGs~l~~~~~~~~----~~~~v~~g~ld 103 (128)
.-..|++||++|-+...+.| ..+-||..+|+
T Consensus 92 tEV~C~~Cg~HLGHVF~DGP~ptg~RyCINS~sL~ 126 (143)
T 2l1u_A 92 MEVVCKQCEAHLGHVFPDGPKPTGQRFCINSVALK 126 (143)
T ss_dssp EEEEESSSCCCCEEEECCSSCGGGCEEEECCTTEE
T ss_pred EEEEECCCCCcCCcccCCCCCCCCCEEEeeeeEEe
Confidence 33789999999988765543 35777777665
No 21
>2i5o_A DNA polymerase ETA; zinc finger, DNA polymerase,POL ETA, UBZ, ubiquitin-binding zinc finger, translesion synthesis, ubiquitin-binding domain; HET: DNA; NMR {Homo sapiens}
Probab=43.08 E-value=12 Score=18.93 Aligned_cols=13 Identities=31% Similarity=0.537 Sum_probs=10.3
Q ss_pred EEeCCCCCceEEe
Q 037013 74 HVFCKVCGITSFY 86 (128)
Q Consensus 74 r~FC~~CGs~l~~ 86 (128)
.+.|++||..+-.
T Consensus 9 ~~~C~~C~~~i~~ 21 (39)
T 2i5o_A 9 QVPCEKCGSLVPV 21 (39)
T ss_dssp EEECTTTCCEEEG
T ss_pred CcccccccCcCCc
Confidence 4579999998764
No 22
>3hcj_A MSRB, peptide methionine sulfoxide reductase; methionine sulfoxide reductase B, oxidized form, oxidoreductase; 1.66A {Xanthomonas campestris PV} PDB: 3hci_A*
Probab=41.79 E-value=11 Score=25.08 Aligned_cols=29 Identities=14% Similarity=0.179 Sum_probs=21.2
Q ss_pred EeCCCCCceEEeccCCCC----CeEEEEecccC
Q 037013 75 VFCKVCGITSFYVPRGTP----NGVAVTFRGVD 103 (128)
Q Consensus 75 ~FC~~CGs~l~~~~~~~~----~~~~v~~g~ld 103 (128)
..|++||+||-+...+.| ..+-||...|+
T Consensus 100 V~C~~Cg~HLGHVF~DGP~ptg~RyCiNS~sL~ 132 (154)
T 3hcj_A 100 IVCARCDSHLGHVFPDGPPPTGERHCLNSVSLA 132 (154)
T ss_dssp EEETTTCCEEEEEESCSCTTTTCEEEECGGGEE
T ss_pred EEeCCCCCccCCccCCCCCCCCCEeeeceeeEE
Confidence 679999999988765432 35777777765
No 23
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=41.70 E-value=13 Score=21.29 Aligned_cols=14 Identities=36% Similarity=0.662 Sum_probs=8.6
Q ss_pred eCCCCCceEEeccC
Q 037013 76 FCKVCGITSFYVPR 89 (128)
Q Consensus 76 FC~~CGs~l~~~~~ 89 (128)
+|+.||..+.+..+
T Consensus 47 rCp~CG~RILyK~R 60 (70)
T 1twf_L 47 RCKDCGHRILLKAR 60 (70)
T ss_dssp CCSSSCCCCCBCCC
T ss_pred cCCCCCceEeEecC
Confidence 57777776555443
No 24
>3e0m_A Peptide methionine sulfoxide reductase MSRA/MSRB 1; fusion, msrab, linker, hinge, cell membrane, membrane, multifunctional enzyme, oxidoreductase; 2.40A {Streptococcus pneumoniae}
Probab=40.96 E-value=22 Score=26.52 Aligned_cols=29 Identities=10% Similarity=-0.074 Sum_probs=20.9
Q ss_pred EeCCCCCceEEeccCCCC-----CeEEEEecccC
Q 037013 75 VFCKVCGITSFYVPRGTP-----NGVAVTFRGVD 103 (128)
Q Consensus 75 ~FC~~CGs~l~~~~~~~~-----~~~~v~~g~ld 103 (128)
..|++||+||-+...+.| ..+-||..+|+
T Consensus 259 v~c~~c~~HLGHVF~DGp~~ptg~RyCiNs~sL~ 292 (313)
T 3e0m_A 259 VRSRSGSAHLGHVFTDGPRELGGLRYCINSASLR 292 (313)
T ss_dssp EEESSSCCEEEEEESCSCTTTTSCEEEECGGGEE
T ss_pred EECCCCCCccCcccCCCCCCCCCCEEeeceeeEe
Confidence 789999999988765433 25667766654
No 25
>1t2y_A Metallothionein, MT; protein fold, no secondary structural elements, metal binding protein; NMR {Synthetic} SCOP: g.46.1.1
Probab=40.46 E-value=3.3 Score=19.17 Aligned_cols=8 Identities=25% Similarity=0.949 Sum_probs=5.4
Q ss_pred EEeeeCCC
Q 037013 9 KGGCRCRK 16 (128)
Q Consensus 9 ~G~C~CGa 16 (128)
+|+|+||.
T Consensus 8 tgtC~Cg~ 15 (26)
T 1t2y_A 8 ASSCNCGS 15 (26)
T ss_dssp TTTCCCSS
T ss_pred CccccCCC
Confidence 46788773
No 26
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=40.18 E-value=15 Score=20.65 Aligned_cols=16 Identities=31% Similarity=0.746 Sum_probs=12.3
Q ss_pred EeCCCCCceEEeccCC
Q 037013 75 VFCKVCGITSFYVPRG 90 (128)
Q Consensus 75 ~FC~~CGs~l~~~~~~ 90 (128)
.-|++||..|.+..+.
T Consensus 39 iRC~~CG~RILyK~Rt 54 (63)
T 3h0g_L 39 IRCRECGHRVMYKMRT 54 (63)
T ss_dssp CCCSSSCCCCCBCCCC
T ss_pred eECCCCCcEEEEEecC
Confidence 4599999998887653
No 27
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=37.52 E-value=32 Score=18.20 Aligned_cols=21 Identities=29% Similarity=0.577 Sum_probs=14.2
Q ss_pred eCCCCCceEEeccCCCCCeEEE
Q 037013 76 FCKVCGITSFYVPRGTPNGVAV 97 (128)
Q Consensus 76 FC~~CGs~l~~~~~~~~~~~~v 97 (128)
-|+.||-.++...+. |..-.|
T Consensus 25 rCpyCGyrii~KvR~-p~vK~v 45 (48)
T 4ayb_P 25 RCPYCGYKIIFMVRK-PTIKIV 45 (48)
T ss_dssp CCTTTCCSCEECCCC-CSCEEE
T ss_pred ccCccCcEEEEEecC-Ccceee
Confidence 499999998887653 433333
No 28
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=35.50 E-value=11 Score=17.75 Aligned_cols=12 Identities=25% Similarity=0.623 Sum_probs=10.2
Q ss_pred eCCCCCceEEec
Q 037013 76 FCKVCGITSFYV 87 (128)
Q Consensus 76 FC~~CGs~l~~~ 87 (128)
-|+.||.++|..
T Consensus 5 ~C~~C~k~Vy~~ 16 (31)
T 1zfo_A 5 NCARCGKIVYPT 16 (31)
T ss_dssp BCSSSCSBCCGG
T ss_pred cCCccCCEEecc
Confidence 499999999865
No 29
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=33.95 E-value=19 Score=21.31 Aligned_cols=16 Identities=19% Similarity=0.341 Sum_probs=11.7
Q ss_pred eEEeCCCCCceEEecc
Q 037013 73 KHVFCKVCGITSFYVP 88 (128)
Q Consensus 73 ~r~FC~~CGs~l~~~~ 88 (128)
.++.|+.||..+....
T Consensus 26 ~~y~Cp~CG~~~v~r~ 41 (83)
T 1vq8_Z 26 EDHACPNCGEDRVDRQ 41 (83)
T ss_dssp SCEECSSSCCEEEEEE
T ss_pred ccCcCCCCCCcceecc
Confidence 3578999999766554
No 30
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=32.24 E-value=13 Score=20.74 Aligned_cols=15 Identities=27% Similarity=0.516 Sum_probs=11.8
Q ss_pred eEEeCCCCCceEEec
Q 037013 73 KHVFCKVCGITSFYV 87 (128)
Q Consensus 73 ~r~FC~~CGs~l~~~ 87 (128)
++.||++||..+...
T Consensus 32 k~r~CaRCGg~v~lr 46 (62)
T 2a20_A 32 QTKFCARCGGRVSLR 46 (62)
T ss_dssp CCEECTTSEEEEESS
T ss_pred CCeeecccCCEeeec
Confidence 467999999887653
No 31
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=31.59 E-value=60 Score=23.94 Aligned_cols=73 Identities=11% Similarity=0.079 Sum_probs=36.5
Q ss_pred Eeee-CCCeEEEEEe----CCCCeeeecCCchhccCCceeEEEcCCCeEEccCCcccceeeeeCC-------ceEeEEeC
Q 037013 10 GGCR-CRKLRWRVRA----PRSVEAWKCNCSDCSMRGNVHFTVAPENFELLGNSEEFLTTHTFGT-------GTAKHVFC 77 (128)
Q Consensus 10 G~C~-CGav~~~~~~----~~~~~~~~ChC~~Crk~~g~~~~~~~~~~~i~~g~~~~l~~y~~s~-------~~~~r~FC 77 (128)
|.|- ||..-..... .... ..++||+.|.-. |- +++-.=. .-|+.+.+..+...+ ...+-..|
T Consensus 183 ~~CPvCGs~P~~s~l~~~g~~~G-~R~l~Cs~C~t~---W~-~~R~~C~-~Cg~~~~l~y~~~e~~~~~~~~~~~r~e~C 256 (309)
T 2fiy_A 183 TLCPACGSPPMAGMIRQGGKETG-LRYLSCSLCACE---WH-YVRIKCS-HCEESKHLAYLSLEHDGQPAEKAVLRAETC 256 (309)
T ss_dssp SSCTTTCCCEEEEEEEC----CC-EEEEEETTTCCE---EE-CCTTSCS-SSCCCSCCEEECCCC-CCCSTTCSEEEEEE
T ss_pred CCCCCCCCcCceeEEeecCCCCC-cEEEEeCCCCCE---Ee-ecCcCCc-CCCCCCCeeEEEecCccccCCCcceEEEEc
Confidence 4453 6765543322 2233 468999999653 21 1111000 011112344443222 55777899
Q ss_pred CCCCceEEecc
Q 037013 78 KVCGITSFYVP 88 (128)
Q Consensus 78 ~~CGs~l~~~~ 88 (128)
.+||+.+-...
T Consensus 257 ~~C~~YlK~~~ 267 (309)
T 2fiy_A 257 PSCQGYLKQFY 267 (309)
T ss_dssp TTTTEEEEEEE
T ss_pred ccccchHhhhh
Confidence 99999876554
No 32
>3j21_j 50S ribosomal protein L44E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=31.54 E-value=21 Score=21.74 Aligned_cols=17 Identities=12% Similarity=0.378 Sum_probs=14.0
Q ss_pred EeEEeCCCCCceEEecc
Q 037013 72 AKHVFCKVCGITSFYVP 88 (128)
Q Consensus 72 ~~r~FC~~CGs~l~~~~ 88 (128)
..+.||+.|+.|--+..
T Consensus 6 ~~~tyC~~C~kHt~HkV 22 (94)
T 3j21_j 6 QIRTYCPFCKKHTIHKV 22 (94)
T ss_dssp EEEECCTTTTSCEEEEE
T ss_pred eeeecCcCCCCCcceEE
Confidence 56789999999987764
No 33
>3ga8_A HTH-type transcriptional regulator MQSA (YGIT/B30; helix-turn-helix, Zn-binding protein, DNA-binding, transcrip transcription regulation; HET: PE4; 1.70A {Escherichia coli k-12} PDB: 3hi2_A
Probab=31.44 E-value=24 Score=20.18 Aligned_cols=17 Identities=12% Similarity=0.358 Sum_probs=13.8
Q ss_pred eEeEEeCCCCCceEEec
Q 037013 71 TAKHVFCKVCGITSFYV 87 (128)
Q Consensus 71 ~~~r~FC~~CGs~l~~~ 87 (128)
.+.-++|+.||..++..
T Consensus 33 ~Vp~~~C~~CGE~~~~~ 49 (78)
T 3ga8_A 33 GIHGLYCVHCEESIMNK 49 (78)
T ss_dssp EEEEEEETTTCCEECCH
T ss_pred CceeEECCCCCCEEECH
Confidence 35678999999998864
No 34
>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS protein structure initiative, joint center for structural G hydrolase; HET: MSE; 2.20A {Escherichia coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A
Probab=31.38 E-value=16 Score=26.23 Aligned_cols=15 Identities=27% Similarity=0.760 Sum_probs=12.0
Q ss_pred eEEeCCCCCceEEec
Q 037013 73 KHVFCKVCGITSFYV 87 (128)
Q Consensus 73 ~r~FC~~CGs~l~~~ 87 (128)
...||+.||+++...
T Consensus 106 ~~~fC~~CG~~~~~~ 120 (269)
T 1vk6_A 106 SHKYCGYCGHEMYPS 120 (269)
T ss_dssp TTSBCTTTCCBEEEC
T ss_pred cCCccccCCCcCccC
Confidence 357999999999653
No 35
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=29.57 E-value=27 Score=21.49 Aligned_cols=17 Identities=12% Similarity=0.120 Sum_probs=12.3
Q ss_pred ceEeEEeCCCCCceEEe
Q 037013 70 GTAKHVFCKVCGITSFY 86 (128)
Q Consensus 70 ~~~~r~FC~~CGs~l~~ 86 (128)
.-....+|++|+.+|--
T Consensus 57 ~f~~~a~CPdC~q~Lev 73 (101)
T 2jne_A 57 FIEMKALCPDCHQPLQV 73 (101)
T ss_dssp EEEEEEECTTTCSBCEE
T ss_pred hhhccccCcchhhHHHH
Confidence 34566899999988743
No 36
>1ryq_A DNA-directed RNA polymerase, subunit E''; structural genomics, zinc, PSI, protein structure initiative; 1.38A {Pyrococcus furiosus} SCOP: g.41.9.3 PDB: 3qqc_E
Probab=29.20 E-value=16 Score=20.98 Aligned_cols=12 Identities=33% Similarity=0.703 Sum_probs=8.4
Q ss_pred eEEeCCCCCceE
Q 037013 73 KHVFCKVCGITS 84 (128)
Q Consensus 73 ~r~FC~~CGs~l 84 (128)
....|++||+.-
T Consensus 22 ~~~~CPnC~s~~ 33 (69)
T 1ryq_A 22 SEDRCPVCGSRD 33 (69)
T ss_dssp SSSSCTTTCCCC
T ss_pred cCCcCCCccCCc
Confidence 335699999763
No 37
>1rxl_A AFAE-DSC, afimbrial adhesin AFA-III, AFA-III, AFAE-3; DAF, afimbrial sheath, DAEC, UPEC, IG-like domain, donor strand complemented; NMR {Escherichia coli} SCOP: b.2.3.6 PDB: 2ixq_B 2ver_A*
Probab=27.75 E-value=87 Score=20.61 Aligned_cols=39 Identities=15% Similarity=0.276 Sum_probs=22.4
Q ss_pred EEeccCCCCCeEEEEecccCCCCCC--ceEEEEecCCCccc
Q 037013 84 SFYVPRGTPNGVAVTFRGVDPGTLS--HVEIKHYDGHNWES 122 (128)
Q Consensus 84 l~~~~~~~~~~~~v~~g~ld~~~~~--~~~i~~~~~~~w~~ 122 (128)
++...++..+.+.|++...|...+. .--+|..+.-+|--
T Consensus 67 ~~m~~dn~tdkl~V~l~a~dg~~WT~d~gv~Yr~~~GnWgG 107 (156)
T 1rxl_A 67 FFLISDNNRDKLYVNIRPMDNSAWTTDNGVFYKNDVGSWGG 107 (156)
T ss_dssp BEEEETTCCCEEEEEEEESSSCCEEECSSEEEESSCSCCCE
T ss_pred EEEEccCCccEEEEEEEecCCCCceecCCEEEecCCCCccc
Confidence 4444444456778888777776662 23344444456743
No 38
>1vq8_3 50S ribosomal protein L44E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.3 PDB: 1jj2_2 1k73_4* 1k8a_4* 1k9m_4* 1kc8_4* 1kd1_4* 1kqs_2* 1m1k_4* 1m90_4* 1n8r_4* 1nji_4* 1q7y_4* 1q81_4* 1q82_4* 1q86_4* 1qvf_2 1qvg_2 1s72_3* 1vq4_3* 1vq5_3* ...
Probab=26.69 E-value=24 Score=21.45 Aligned_cols=16 Identities=13% Similarity=0.260 Sum_probs=13.1
Q ss_pred EeEEeCCCCCceEEec
Q 037013 72 AKHVFCKVCGITSFYV 87 (128)
Q Consensus 72 ~~r~FC~~CGs~l~~~ 87 (128)
..+.||+.|+.|--+.
T Consensus 6 ~~~tyCp~C~kHt~Hk 21 (92)
T 1vq8_3 6 RFNTYCPHCNEHQEHE 21 (92)
T ss_dssp EEEEEETTTTEEEEEE
T ss_pred cccccCCCCCCCccEE
Confidence 4578999999998765
No 39
>2elu_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2elw_A
Probab=26.45 E-value=11 Score=18.34 Aligned_cols=10 Identities=20% Similarity=0.484 Sum_probs=7.5
Q ss_pred cCCchhccCC
Q 037013 32 CNCSDCSMRG 41 (128)
Q Consensus 32 ChC~~Crk~~ 41 (128)
=||.+|.|.-
T Consensus 10 qhcrfckkky 19 (37)
T 2elu_A 10 QHCRFCKKKY 19 (37)
T ss_dssp CEETTTTEEC
T ss_pred HHHHHHHHHH
Confidence 3899998763
No 40
>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}
Probab=26.03 E-value=26 Score=20.93 Aligned_cols=13 Identities=23% Similarity=0.616 Sum_probs=10.6
Q ss_pred EeCCCCCceEEec
Q 037013 75 VFCKVCGITSFYV 87 (128)
Q Consensus 75 ~FC~~CGs~l~~~ 87 (128)
.-|+-||.+|-+.
T Consensus 9 ~~~PlCG~~L~W~ 21 (95)
T 2k5c_A 9 AKCPICGSPLKWE 21 (95)
T ss_dssp EECSSSCCEECHH
T ss_pred ccCCcCCCccCHH
Confidence 4599999999664
No 41
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=26.00 E-value=35 Score=17.63 Aligned_cols=15 Identities=27% Similarity=0.667 Sum_probs=11.0
Q ss_pred EeCCCCCc-eEEeccC
Q 037013 75 VFCKVCGI-TSFYVPR 89 (128)
Q Consensus 75 ~FC~~CGs-~l~~~~~ 89 (128)
..|+.||. .|-+...
T Consensus 6 ~~CP~C~~~~l~~d~~ 21 (50)
T 1pft_A 6 KVCPACESAELIYDPE 21 (50)
T ss_dssp CSCTTTSCCCEEEETT
T ss_pred EeCcCCCCcceEEcCC
Confidence 46999999 7766443
No 42
>2kv1_A Methionine-R-sulfoxide reductase B1; MSRB1, SELR, metal-binding, nucleus, oxidoreductase, seleniu; NMR {Mus musculus}
Probab=25.80 E-value=31 Score=22.13 Aligned_cols=31 Identities=16% Similarity=0.161 Sum_probs=21.0
Q ss_pred eEEeCCCCCceEEecc-CCCC----CeEEEEecccC
Q 037013 73 KHVFCKVCGITSFYVP-RGTP----NGVAVTFRGVD 103 (128)
Q Consensus 73 ~r~FC~~CGs~l~~~~-~~~~----~~~~v~~g~ld 103 (128)
....|++||++|-... ++.| ..+-||-.+|+
T Consensus 67 ~Ev~C~~Cg~HLGHVF~~DGP~ptg~RyCINS~sL~ 102 (124)
T 2kv1_A 67 LKVSCGKCGNGLGHEFLNDGPKRGQSRFCIFSSSLK 102 (124)
T ss_dssp EEEECTTTTCCCEEECTTSCTTTTCSCEECCTTTEE
T ss_pred EEEEEecCCCccCCccCCCCCCCCCCEEeecceeeE
Confidence 3467999999998876 3332 24667666654
No 43
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=24.44 E-value=38 Score=23.95 Aligned_cols=16 Identities=19% Similarity=0.442 Sum_probs=13.1
Q ss_pred EEeCCCCCceEEeccC
Q 037013 74 HVFCKVCGITSFYVPR 89 (128)
Q Consensus 74 r~FC~~CGs~l~~~~~ 89 (128)
-.+|++||--||+...
T Consensus 222 Iv~Cp~CgRIL~~~~~ 237 (256)
T 3na7_A 222 MITCPYCGRILYAEGA 237 (256)
T ss_dssp CEECTTTCCEEECSCC
T ss_pred EEECCCCCeeEEeCcc
Confidence 4789999999987643
No 44
>1ut1_A DRAA, DR hemagglutinin structural subunit; adhesin, DRAE, fimbrial adhesin, UPEC, DAEC; 1.7A {Escherichia coli} SCOP: b.2.3.6 PDB: 1usq_A* 2jkj_A* 2jkl_A* 2jkn_A* 2w5p_A 1usz_A 1ut2_A
Probab=24.06 E-value=1.1e+02 Score=19.99 Aligned_cols=40 Identities=15% Similarity=0.241 Sum_probs=25.9
Q ss_pred EEeccCCCCCeEEEEecccCCCCCC--ceEEEEecCCCcccc
Q 037013 84 SFYVPRGTPNGVAVTFRGVDPGTLS--HVEIKHYDGHNWESS 123 (128)
Q Consensus 84 l~~~~~~~~~~~~v~~g~ld~~~~~--~~~i~~~~~~~w~~~ 123 (128)
++...++..+.+.|++...|...+. .--+|..+.-+|--.
T Consensus 79 ~~m~~dn~~dkl~V~l~atdg~~Wt~d~gv~Yr~~~GnWgG~ 120 (148)
T 1ut1_A 79 FFLISDNNRDKLYVNIRPTDNSAWTTDNGVFYKNDVGSWGGI 120 (148)
T ss_dssp EEEEETTSCCEEEEEEEESSSCCEEEETTEEEESSCSCCEEE
T ss_pred EEEEccCCccEEEEEEEecCCCCceecCCEEEecCCCCcccE
Confidence 4555555567889999888887763 334555555677543
No 45
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=23.92 E-value=35 Score=21.10 Aligned_cols=16 Identities=13% Similarity=0.403 Sum_probs=13.3
Q ss_pred EeEEeCCCCCceEEec
Q 037013 72 AKHVFCKVCGITSFYV 87 (128)
Q Consensus 72 ~~r~FC~~CGs~l~~~ 87 (128)
+..++|..||..++..
T Consensus 34 v~~~~C~~CGE~~~d~ 49 (133)
T 3o9x_A 34 IHGLYCVHCEESIMNK 49 (133)
T ss_dssp EEEEEESSSSCEECCH
T ss_pred CceeECCCCCCEeecH
Confidence 5679999999988764
No 46
>2kao_A Methionine-R-sulfoxide reductase B1; mouse reduced methionine sulfoxide reductase B1 (MSRB1) (SEC95Cys mutant, selenocysteine; NMR {Mus musculus} PDB: 2kv1_A
Probab=23.46 E-value=36 Score=21.83 Aligned_cols=31 Identities=16% Similarity=0.161 Sum_probs=21.3
Q ss_pred eEEeCCCCCceEEecc-CCCC----CeEEEEecccC
Q 037013 73 KHVFCKVCGITSFYVP-RGTP----NGVAVTFRGVD 103 (128)
Q Consensus 73 ~r~FC~~CGs~l~~~~-~~~~----~~~~v~~g~ld 103 (128)
.-..|++||++|-... .+.| ..+-||..+|+
T Consensus 67 tEV~C~~Cg~HLGHVF~~DGP~ptg~RyCINS~sL~ 102 (124)
T 2kao_A 67 LKVSCGKCGNGLGHEFLNDGPKRGQSRFCIFSSSLK 102 (124)
T ss_dssp EEEECTTTTCCCEEECCSSCSSSSCCCEECCSSSEE
T ss_pred EEEEeCCCCCcCCccCCCCCcCCCCCEeeeCeEEEE
Confidence 4477999999998876 3322 35667766665
No 47
>1dxg_A Desulforedoxin; non-heme iron protein, rubredoxin type metal center, electron transport; 1.80A {Desulfovibrio gigas} SCOP: g.41.5.2 PDB: 1dcd_A 1dhg_A 1cfw_A 2lk5_A 2lk6_A
Probab=23.22 E-value=69 Score=15.46 Aligned_cols=17 Identities=18% Similarity=0.417 Sum_probs=12.3
Q ss_pred EeEEeCCCCCceEEecc
Q 037013 72 AKHVFCKVCGITSFYVP 88 (128)
Q Consensus 72 ~~r~FC~~CGs~l~~~~ 88 (128)
.+.+-|..||.-+-...
T Consensus 4 ~~fY~C~~CGnivev~~ 20 (36)
T 1dxg_A 4 GDVYKCELCGQVVKVLE 20 (36)
T ss_dssp TCEEECTTTCCEEEEEE
T ss_pred ccEEEcCCCCcEEEEEe
Confidence 34677999998776543
No 48
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1
Probab=23.04 E-value=27 Score=17.11 Aligned_cols=8 Identities=38% Similarity=1.223 Sum_probs=6.4
Q ss_pred eCCCCCce
Q 037013 76 FCKVCGIT 83 (128)
Q Consensus 76 FC~~CGs~ 83 (128)
.|+.||+|
T Consensus 2 lC~~C~~p 9 (36)
T 1k81_A 2 ICRECGKP 9 (36)
T ss_dssp CCSSSCSC
T ss_pred CCcCCCCC
Confidence 48899886
No 49
>2zkr_2 60S ribosomal protein L37E; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} SCOP: i.1.1.1
Probab=23.02 E-value=36 Score=20.85 Aligned_cols=16 Identities=25% Similarity=0.877 Sum_probs=12.3
Q ss_pred EeEEeCCCCCceEEec
Q 037013 72 AKHVFCKVCGITSFYV 87 (128)
Q Consensus 72 ~~r~FC~~CGs~l~~~ 87 (128)
..+..|+.||...|+.
T Consensus 14 KtH~lCrRCG~~sfH~ 29 (97)
T 2zkr_2 14 KTHTLCRRCGSKAYHL 29 (97)
T ss_dssp CCEECCTTTCSSCEET
T ss_pred CCCCcCCCCCCccCcC
Confidence 5667888888888865
No 50
>3lpe_B DNA-directed RNA polymerase subunit E''; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} SCOP: g.41.9.0
Probab=23.02 E-value=33 Score=18.98 Aligned_cols=8 Identities=25% Similarity=0.974 Sum_probs=6.7
Q ss_pred eCCCCCce
Q 037013 76 FCKVCGIT 83 (128)
Q Consensus 76 FC~~CGs~ 83 (128)
-|++||+.
T Consensus 15 ~CpnC~~~ 22 (59)
T 3lpe_B 15 ICPICHSP 22 (59)
T ss_dssp BCTTTCCB
T ss_pred CCCCCCCC
Confidence 49999984
No 51
>4a18_C 60S ribosomal protein L36A; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_C 4a1b_C 4a1d_C
Probab=21.62 E-value=46 Score=20.83 Aligned_cols=16 Identities=19% Similarity=0.549 Sum_probs=13.2
Q ss_pred EeEEeCCCCCceEEec
Q 037013 72 AKHVFCKVCGITSFYV 87 (128)
Q Consensus 72 ~~r~FC~~CGs~l~~~ 87 (128)
..+.||+.|+.|--+.
T Consensus 7 ~~~tyCpkC~kHt~Hk 22 (109)
T 4a18_C 7 TRKTYCKKCNSHTNHK 22 (109)
T ss_dssp EEEEEETTTTEEEEEE
T ss_pred ceeecCcCCCCCcceE
Confidence 5678999999987665
No 52
>2yvr_A Transcription intermediary factor 1-beta; ZF-B_BOX domain, structural genomics, NPPSFA; 1.80A {Homo sapiens}
Probab=21.49 E-value=30 Score=17.69 Aligned_cols=15 Identities=20% Similarity=0.563 Sum_probs=11.3
Q ss_pred EeEEeCCCCCceEEe
Q 037013 72 AKHVFCKVCGITSFY 86 (128)
Q Consensus 72 ~~r~FC~~CGs~l~~ 86 (128)
....||.+|+.+|-.
T Consensus 16 ~l~lfC~~~~~~iC~ 30 (50)
T 2yvr_A 16 PLVLFCESCDTLTCR 30 (50)
T ss_dssp BCCEEETTTTEEECH
T ss_pred CEEEEeCCCCEEEec
Confidence 456899999987754
No 53
>2k8d_A Peptide methionine sulfoxide reductase MSRB; thermophilic, Zn binding, metal-binding, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=21.36 E-value=36 Score=22.55 Aligned_cols=17 Identities=24% Similarity=0.385 Sum_probs=13.8
Q ss_pred EeEEeCCCCCceEEecc
Q 037013 72 AKHVFCKVCGITSFYVP 88 (128)
Q Consensus 72 ~~r~FC~~CGs~l~~~~ 88 (128)
.-.+-|..||.+||...
T Consensus 59 ~G~Y~C~~Cg~pLF~S~ 75 (151)
T 2k8d_A 59 DGIYRCICCGTDLFDSE 75 (151)
T ss_dssp CSEEEETTTTEEEEEGG
T ss_pred CEEEEecCCCCcccCCc
Confidence 44578999999999863
Done!