BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037014
(198 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2E6L|A Chain A, Structure Of Mouse Wrn Exonuclease Domain
pdb|2E6M|A Chain A, Structure Of Mouse Werner Exonuclease Domain
Length = 208
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 70/152 (46%), Gaps = 3/152 (1%)
Query: 42 IVGLNCKWKPHPIPSLSGKIATLQLCV-DTKCLILQLLYMDCIPLSIKNFLSDPNVVFVG 100
+VG + +W P P ++A +QLCV ++KC + + M P +K L + ++ G
Sbjct: 42 VVGFDMEWPPIYKPGKRSRVAVIQLCVSESKCYLFHISSMSVFPQGLKMLLENKSIKKAG 101
Query: 101 IEVEEIMSKLKNEYGLCIKKKIDVRTLAKLHFPISCLGKPGLKVLAYQLLRLRPWKPKKV 160
+ +E KL ++ + ++ +++ +A + + C L L +L + K K +
Sbjct: 102 VGIEGDQWKLLRDFDVKLESFVELTDVA--NEKLKCAETWSLNGLVKHVLGKQLLKDKSI 159
Query: 161 CMNNLESGFLDTELIKFACIDAYVSCAIGTKL 192
+N + L + +A DAY I KL
Sbjct: 160 RCSNWSNFPLTEDQKLYAATDAYAGLIIYQKL 191
>pdb|2FBT|A Chain A, Wrn Exonuclease
pdb|2FBV|A Chain A, Wrn Exonuclease, Mn Complex
pdb|2FBX|A Chain A, Wrn Exonuclease, Mg Complex
pdb|2FBY|A Chain A, Wrn Exonuclease, Eu Complex
pdb|2FC0|A Chain A, Wrn Exonuclease, Mn Dgmp Complex
Length = 205
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 72/158 (45%), Gaps = 4/158 (2%)
Query: 42 IVGLNCKWKPHPIPSLSGKIATLQLCV-DTKCLILQLLYMDCIPLSIKNFLSDPNVVFVG 100
+VG + +W P GK+A +QLCV ++KC + + M P +K L + V G
Sbjct: 47 VVGFDMEWPPLYNRGKLGKVALIQLCVSESKCYLFHVSSMSVFPQGLKMLLENKAVKKAG 106
Query: 101 IEVEEIMSKLKNEYGLCIKKKIDVRTLAKLHFPISCLGKPGLKVLAYQLLRLRPWKPKKV 160
+ +E KL ++ + +K +++ +A + + C L L LL + K K +
Sbjct: 107 VGIEGDQWKLLRDFDIKLKNFVELTDVA--NKKLKCTETWSLNSLVKHLLGKQLLKDKSI 164
Query: 161 CMNNLESGFLDTELIKFACIDAYVSCAIGTKL-LLEET 197
+N L + +A DAY I L +L++T
Sbjct: 165 RCSNWSKFPLTEDQKLYAATDAYAGFIIYRNLEILDDT 202
>pdb|1VK0|A Chain A, X-Ray Structure Of Gene Product From Arabidopsis Thaliana
At5g06450
pdb|1VK0|B Chain B, X-Ray Structure Of Gene Product From Arabidopsis Thaliana
At5g06450
pdb|1VK0|C Chain C, X-Ray Structure Of Gene Product From Arabidopsis Thaliana
At5g06450
pdb|1VK0|D Chain D, X-Ray Structure Of Gene Product From Arabidopsis Thaliana
At5g06450
pdb|1VK0|E Chain E, X-Ray Structure Of Gene Product From Arabidopsis Thaliana
At5g06450
pdb|1VK0|F Chain F, X-Ray Structure Of Gene Product From Arabidopsis Thaliana
At5g06450
pdb|2Q3S|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
Gene Product From Arabidopsis Thaliana At5g06450
pdb|2Q3S|B Chain B, Ensemble Refinement Of The Protein Crystal Structure Of
Gene Product From Arabidopsis Thaliana At5g06450
pdb|2Q3S|C Chain C, Ensemble Refinement Of The Protein Crystal Structure Of
Gene Product From Arabidopsis Thaliana At5g06450
pdb|2Q3S|D Chain D, Ensemble Refinement Of The Protein Crystal Structure Of
Gene Product From Arabidopsis Thaliana At5g06450
pdb|2Q3S|E Chain E, Ensemble Refinement Of The Protein Crystal Structure Of
Gene Product From Arabidopsis Thaliana At5g06450
pdb|2Q3S|F Chain F, Ensemble Refinement Of The Protein Crystal Structure Of
Gene Product From Arabidopsis Thaliana At5g06450
Length = 206
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 48/92 (52%), Gaps = 3/92 (3%)
Query: 61 IATLQLCVDTKCLILQLL--YMDCIPLSIKNFLSDPNVVFVGIEVEEIMSKLKNEYGLCI 118
+++++L CL L+L + D + + F + V FVG+++EE + L+ +GL I
Sbjct: 73 LSSVKLSTRNLCLFLRLPKPFHDNLK-DLYRFFASKFVTFVGVQIEEDLDLLRENHGLVI 131
Query: 119 KKKIDVRTLAKLHFPISCLGKPGLKVLAYQLL 150
+ I+V LA L G + LA+++L
Sbjct: 132 RNAINVGKLAAEARGTLVLEFLGTRELAHRVL 163
>pdb|1POI|B Chain B, Crystal Structure Of Glutaconate Coenzyme A-transferase
From Acidaminococcus Fermentans To 2.55 Angstoms
Resolution
pdb|1POI|D Chain D, Crystal Structure Of Glutaconate Coenzyme A-transferase
From Acidaminococcus Fermentans To 2.55 Angstoms
Resolution
Length = 260
Score = 30.4 bits (67), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 36/88 (40%), Gaps = 19/88 (21%)
Query: 33 RSLHSAQILIVGLNCKWKPHPIPSLSGKIATLQLCVDTKCLILQLLYMDCIPLSIKNFLS 92
+ + + Q++ VG +P + +A D ++ L MDC P+ + +
Sbjct: 17 KQIKNGQVVTVGTG-------LPLIGASVAKRVYAPDCHIIVESGL-MDCSPVEVPRSVG 68
Query: 93 D-----------PNVVFVGIEVEEIMSK 109
D PNV FVG E+ E + K
Sbjct: 69 DLRFMAHCGCIWPNVRFVGFEINEYLHK 96
>pdb|3SAF|A Chain A, Crystal Structure Of The Human Rrp6 Catalytic Domain With
D313n Mutation In The Active Site
pdb|3SAF|B Chain B, Crystal Structure Of The Human Rrp6 Catalytic Domain With
D313n Mutation In The Active Site
pdb|3SAG|A Chain A, Crystal Structure Of The Human Rrp6 Catalytic Domain With
D313n Mutation In The Active Site
pdb|3SAG|B Chain B, Crystal Structure Of The Human Rrp6 Catalytic Domain With
D313n Mutation In The Active Site
Length = 428
Score = 26.9 bits (58), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 36/157 (22%), Positives = 58/157 (36%), Gaps = 32/157 (20%)
Query: 52 HPIPSLSGKIATLQLCVDTKCLILQLLYMDCIPLSIKNFLSDPNVVFVGIEVEEIMSKLK 111
H S G +Q+ T+ I+ L + + L+DP +V V + + L+
Sbjct: 139 HSYRSFLGLTCLMQISTRTEDFIIDTLELRSDMYILNESLTDPAIVKVFHGADSDIEWLQ 198
Query: 112 NEYGLCIKKKIDVRTLAKLHFPISCLGKPGLKVL-----------AYQLL--RLRPWKPK 158
++GL + D A+L LG+ L L YQL R+RP
Sbjct: 199 KDFGLYVVNMFDTHQAARL----LNLGRHSLDHLLKLYCNVDSNKQYQLADWRIRP---- 250
Query: 159 KVCMNNLESGFLDTELIKFACIDAYVSCAIGTKLLLE 195
L E++ +A D + I K+ LE
Sbjct: 251 -----------LPEEMLSYARDDTHYLLYIYDKMRLE 276
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.141 0.436
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,212,104
Number of Sequences: 62578
Number of extensions: 188181
Number of successful extensions: 453
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 449
Number of HSP's gapped (non-prelim): 6
length of query: 198
length of database: 14,973,337
effective HSP length: 94
effective length of query: 104
effective length of database: 9,091,005
effective search space: 945464520
effective search space used: 945464520
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 49 (23.5 bits)