Query 037014
Match_columns 198
No_of_seqs 152 out of 1063
Neff 8.2
Searched_HMMs 29240
Date Mon Mar 25 12:46:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037014.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037014hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vk0_A Hypothetical protein; h 100.0 2.4E-42 8.1E-47 273.9 11.9 183 9-195 12-206 (206)
2 2e6m_A Werner syndrome ATP-dep 100.0 4.8E-35 1.7E-39 232.0 17.5 183 7-195 11-194 (208)
3 3saf_A Exosome component 10; e 100.0 1.3E-30 4.4E-35 226.3 18.2 165 17-194 111-275 (428)
4 2hbj_A Exosome complex exonucl 100.0 2.1E-28 7.2E-33 211.9 17.8 164 18-194 89-252 (410)
5 1yt3_A Ribonuclease D, RNAse D 100.0 1.4E-27 4.9E-32 204.7 18.3 163 19-194 6-168 (375)
6 3cym_A Uncharacterized protein 99.9 9E-24 3.1E-28 184.4 15.8 162 18-194 20-185 (440)
7 2kfn_A Klenow fragment of DNA 99.8 2.9E-18 1E-22 155.0 15.6 163 19-194 10-191 (605)
8 3pv8_A DNA polymerase I; DNA p 99.7 5.7E-17 2E-21 145.8 11.3 147 41-194 30-179 (592)
9 1x9m_A DNA polymerase; DNA plo 99.5 3.5E-15 1.2E-19 136.8 6.4 146 42-194 1-181 (698)
10 4dfk_A DNA polymerase I, therm 99.1 9.6E-11 3.3E-15 104.4 6.1 117 40-194 10-126 (540)
11 3v9w_A Ribonuclease T; DEDD nu 98.1 9.7E-06 3.3E-10 64.4 8.9 80 94-195 133-220 (235)
12 1bgx_T TAQ DNA polymerase; DNA 98.0 4.7E-06 1.6E-10 77.7 6.1 113 41-194 305-418 (832)
13 1wlj_A Interferon stimulated g 97.7 0.00011 3.7E-09 56.4 6.9 92 85-195 75-168 (189)
14 2p1j_A POLIII, DNA polymerase 97.6 0.00093 3.2E-08 50.9 11.4 88 85-196 84-176 (186)
15 3mxm_B Three prime repair exon 97.2 0.0011 3.9E-08 52.8 8.2 92 85-194 106-213 (242)
16 2gui_A DNA polymerase III epsi 97.2 0.014 4.6E-07 44.5 13.6 89 86-196 88-185 (194)
17 1w0h_A 3'-5' exonuclease ERI1; 97.1 0.0092 3.2E-07 45.7 12.0 92 86-196 91-195 (204)
18 2f96_A Ribonuclease T; RNAse, 96.8 0.02 6.9E-07 44.6 11.4 80 94-195 125-212 (224)
19 1zbh_A 3'-5' exonuclease ERI1; 96.6 0.044 1.5E-06 44.8 13.1 92 86-196 159-263 (299)
20 1qht_A Protein (DNA polymerase 96.2 0.05 1.7E-06 50.4 11.8 150 40-193 135-327 (775)
21 1zbu_A ERI-1 homolog, 3'-5' ex 95.9 0.13 4.4E-06 43.1 12.2 92 86-196 209-313 (349)
22 1y97_A Three prime repair exon 95.8 0.027 9.3E-07 44.2 7.2 92 85-194 101-208 (238)
23 2qxf_A Exodeoxyribonuclease I; 95.7 0.14 4.7E-06 44.8 11.9 91 86-195 87-200 (482)
24 3u3y_B Three prime repair exon 94.7 0.095 3.2E-06 43.3 7.4 92 85-194 106-213 (314)
25 1noy_A Protein (DNA polymerase 94.1 0.49 1.7E-05 40.0 10.9 176 10-192 51-335 (388)
26 2gv9_A DNA polymerase; polymer 93.6 0.38 1.3E-05 46.6 10.2 97 92-192 415-550 (1193)
27 2xri_A ERI1 exoribonuclease 3; 93.4 1.1 3.6E-05 34.7 10.9 89 86-196 110-214 (224)
28 3iay_A DNA polymerase delta ca 93.0 0.8 2.7E-05 43.2 11.2 104 85-192 318-465 (919)
29 1s5j_A DNA polymerase I; repli 91.9 2.1 7.2E-05 39.9 12.4 99 83-189 260-386 (847)
30 3ikm_A DNA polymerase subunit 90.7 0.078 2.7E-06 50.3 1.5 93 96-193 195-344 (1172)
31 3qex_A DNA polymerase, GP43; d 89.8 2.3 7.9E-05 40.0 10.6 180 9-192 52-338 (903)
32 2a1r_A Poly(A)-specific ribonu 88.3 1.2 4E-05 38.3 7.0 106 85-193 272-394 (430)
33 2py5_A DNA polymerase; protein 88.0 2.4 8.1E-05 37.8 9.0 135 40-193 6-181 (575)
34 3k59_A POL II, DNA polymerase 85.2 12 0.00041 34.6 12.3 172 8-192 75-349 (786)
35 3cg7_A CRN-4, cell death-relat 82.9 1 3.6E-05 36.7 3.9 91 86-196 101-209 (308)
36 3d45_A Poly(A)-specific ribonu 73.7 2 6.7E-05 37.7 3.0 105 87-193 268-389 (507)
37 2igi_A Oligoribonuclease; RNAs 70.3 15 0.00052 26.7 6.9 82 85-194 86-175 (180)
38 2gbz_A Oligoribonuclease; ORN, 67.6 3.8 0.00013 30.7 3.1 86 86-195 91-180 (194)
39 2cof_A Protein KIAA1914; PH do 58.2 24 0.00083 23.0 5.6 33 3-35 67-99 (107)
40 1wgq_A FYVE, rhogef and PH dom 50.6 38 0.0013 22.0 5.5 33 3-35 69-101 (109)
41 3aj4_A Pleckstrin homology dom 49.9 26 0.0009 22.9 4.6 33 3-35 77-109 (112)
42 3rcp_A Pleckstrin homology dom 48.6 35 0.0012 21.8 5.1 33 3-35 59-91 (103)
43 4gmj_B CCR4-NOT transcription 46.8 71 0.0024 25.6 7.4 80 92-194 147-243 (285)
44 2i5f_A Pleckstrin; PH domain, 42.7 36 0.0012 21.9 4.4 33 3-35 75-107 (109)
45 1pls_A Pleckstrin homology dom 42.5 48 0.0016 21.6 5.0 33 3-35 67-99 (113)
46 3q7c_A Nucleoprotein; deddh ex 39.7 51 0.0018 25.4 5.1 82 40-128 57-162 (243)
47 2d9v_A Pleckstrin homology dom 38.7 46 0.0016 22.7 4.6 33 3-35 80-112 (130)
48 2d9y_A Pleckstrin homology dom 36.6 46 0.0016 21.7 4.2 32 4-35 76-107 (117)
49 2w2x_D 1-phosphatidylinositol- 35.9 42 0.0014 22.7 4.0 33 3-35 83-117 (124)
50 3cxb_B Pleckstrin homology dom 34.9 45 0.0015 22.1 3.9 33 3-35 67-99 (112)
51 1u5d_A SKAP55, SRC kinase-asso 34.9 42 0.0014 21.4 3.7 33 3-35 71-103 (108)
52 1wg7_A Dedicator of cytokinesi 33.6 51 0.0017 22.8 4.2 33 3-35 90-122 (150)
53 1wjm_A Beta-spectrin III; PH d 32.6 58 0.002 21.7 4.2 33 3-35 83-115 (123)
54 2dkp_A Pleckstrin homology dom 31.1 50 0.0017 22.0 3.7 33 3-35 85-117 (128)
55 1wi1_A Calcium-dependent activ 29.2 89 0.0031 21.8 4.7 32 3-35 77-108 (126)
56 1unq_A RAC-alpha serine/threon 29.2 97 0.0033 20.5 4.9 32 4-35 74-108 (125)
57 1u5f_A SRC-associated adaptor 27.6 78 0.0027 21.8 4.3 33 3-35 85-117 (148)
58 1x05_A Pleckstrin; PH domain, 27.4 52 0.0018 22.0 3.2 33 3-35 86-118 (129)
59 1upq_A PEPP1; PH domain, phosp 25.9 73 0.0025 20.9 3.7 32 4-35 76-107 (123)
60 2coc_A FYVE, rhogef and PH dom 25.6 1.2E+02 0.0043 20.2 4.9 32 3-35 73-104 (112)
61 2od5_A Hypothetical protein; m 25.6 42 0.0014 22.4 2.2 24 81-104 45-69 (116)
62 1v89_A Hypothetical protein KI 25.1 93 0.0032 20.0 4.2 25 11-35 86-110 (118)
63 2pa8_L DNA-directed RNA polyme 25.1 45 0.0015 21.9 2.4 32 72-103 12-45 (92)
64 1v5u_A SBF1, SET binding facto 22.5 98 0.0034 20.0 3.9 32 3-35 78-109 (117)
65 1btk_A Bruton'S tyrosine kinas 22.5 1.2E+02 0.0043 21.7 4.7 34 3-37 99-132 (169)
66 2da0_A 130-kDa phosphatidylino 22.4 1.3E+02 0.0045 19.5 4.5 31 4-35 69-99 (114)
67 1twf_K B13.6, DNA-directed RNA 22.3 1.6E+02 0.0056 20.2 4.9 45 59-103 17-63 (120)
68 1v5p_A Pleckstrin homology dom 21.8 1.2E+02 0.0042 20.6 4.3 31 4-35 88-118 (126)
69 2d9x_A Oxysterol binding prote 21.8 52 0.0018 21.8 2.3 33 3-35 70-102 (120)
70 4hec_A Putative uncharacterize 20.3 2.4E+02 0.008 21.0 5.9 87 85-196 93-182 (190)
No 1
>1vk0_A Hypothetical protein; homohexamer, AT5G06450, struc genomics, protein structure initiative, center for eukaryot structural genomics, CESG; 2.10A {Arabidopsis thaliana} SCOP: c.55.3.5 PDB: 2q3s_A
Probab=100.00 E-value=2.4e-42 Score=273.85 Aligned_cols=183 Identities=21% Similarity=0.225 Sum_probs=148.9
Q ss_pred EcCeEEEEE--EcCCHHHHHHHHHHHHhhc-cCCCeEEEEeeeecCCCC----CCCC--CceeEEEeeeCCeEEEEEccc
Q 037014 9 FCGKIIETT--VTSTTSVAENWLLKIRSLH-SAQILIVGLNCKWKPHPI----PSLS--GKIATLQLCVDTKCLILQLLY 79 (198)
Q Consensus 9 f~~~~i~~~--v~~~~~~~~~~i~~~~~~~-~~~~~~vg~D~Ew~~~~~----~~~~--~~~~liQla~~~~~~i~~l~~ 79 (198)
.+|+.+.+. .+.+.+++..++..+.+.. .....+||||+||.|.+. ++.. +++|+||||++++|+|||+.
T Consensus 12 ~~g~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~~vvg~DtEw~p~~~~~~~~~~~~~~~~~LiQla~~~~~~l~~l~- 90 (206)
T 1vk0_A 12 TDGSYVQTKTIDVGSSTDISPYLSLIREDSILNGNRAVIFDVYWDVGFPETETKTKTSGWSLSSVKLSTRNLCLFLRLP- 90 (206)
T ss_dssp TTSCEEEEEEEECCSSCCCHHHHHHHHHHHHHHSTTEEEEEEEEECCC------CGGGGCEEEEEEEECSSEEEEEECC-
T ss_pred cCCccceeeEEEEecHHHHHHHHHHHHHhhhhcCCCEEEEEeeccCCCcccccccCCCCCceEEEEEecCCCeEEEecc-
Confidence 355554332 3335555666666553210 012479999999998751 1223 59999999999999999993
Q ss_pred cCcccHH---HHHhhcCCCeEEEEEeecchHHHHhhhcCCccCceeehHHHHHHhCCCCCCCCchHHHHHHHHcCCcCCC
Q 037014 80 MDCIPLS---IKNFLSDPNVVFVGIEVEEIMSKLKNEYGLCIKKKIDVRTLAKLHFPISCLGKPGLKVLAYQLLRLRPWK 156 (198)
Q Consensus 80 ~~~~~~~---L~~lL~d~~i~kvG~~~~~D~~~L~~~~gi~~~~~~Dl~~l~~~~l~~~~~~~~~L~~l~~~~l~~~l~K 156 (198)
+.+|+. |++||+||+|+||||++++|+++|++.||+.+++++|++.++...+|.+...+.||++|++++||.++ |
T Consensus 91 -~~~~~~L~~L~~lL~d~~i~Kvg~~~~~D~~~L~~~~g~~~~~~~Dl~~la~~~lg~~~~~~~gL~~Lv~~~lg~~l-K 168 (206)
T 1vk0_A 91 -KPFHDNLKDLYRFFASKFVTFVGVQIEEDLDLLRENHGLVIRNAINVGKLAAEARGTLVLEFLGTRELAHRVLWSDL-G 168 (206)
T ss_dssp -SSCCGGGHHHHHHHTCSSSEEEESSCHHHHHHHHHHHCCCCSSEEEHHHHHHHHHTCGGGGGCCHHHHHHHHHCCCC-H
T ss_pred -ccCCccHHHHHHHhcCCCceEEEeccHHHHHHHHHhcCCCcCCeeeHHHHHHHHcCCCCCCCccHHHHHHHHhCCcC-C
Confidence 567766 88999999999999999999999999999999999999988877778654458999999999999999 8
Q ss_pred CCceeccCCCCCCCCHHHHHHHHHhHHHHHHHHHHHhcc
Q 037014 157 PKKVCMNNLESGFLDTELIKFACIDAYVSCAIGTKLLLE 195 (198)
Q Consensus 157 ~~~~~~s~W~~~~L~~~Qi~YAA~Da~~~~~l~~~L~~~ 195 (198)
++++++|||++ |||++|+.|||.|||+++.||.+|.+|
T Consensus 169 ~k~~~~SdW~~-pLs~~Qi~YAA~Da~~l~~l~~~L~~~ 206 (206)
T 1vk0_A 169 QLDSIEAKWEK-AGPEEQLEAAAIEGWLIVNVWDQLSDE 206 (206)
T ss_dssp HHHHHHHTGGG-SCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCcccCCCCC-cCCHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 77899999999 999999999999999999999999865
No 2
>2e6m_A Werner syndrome ATP-dependent helicase homolog; APO form, hydrolase; 2.00A {Mus musculus} PDB: 2e6l_A 2fby_A 2fbv_A 2fbx_A 2fbt_A 2fc0_A*
Probab=100.00 E-value=4.8e-35 Score=232.02 Aligned_cols=183 Identities=21% Similarity=0.295 Sum_probs=154.4
Q ss_pred EEEcCeEEEEEEcCCHHHHHHHHHHHHhhccCCCeEEEEeeeecCCCCCCCCCceeEEEeeeC-CeEEEEEccccCcccH
Q 037014 7 ISFCGKIIETTVTSTTSVAENWLLKIRSLHSAQILIVGLNCKWKPHPIPSLSGKIATLQLCVD-TKCLILQLLYMDCIPL 85 (198)
Q Consensus 7 v~f~~~~i~~~v~~~~~~~~~~i~~~~~~~~~~~~~vg~D~Ew~~~~~~~~~~~~~liQla~~-~~~~i~~l~~~~~~~~ 85 (198)
++|.|. +.++++++++..++..+...- ....+||||+||.+.+..+..+++++||||++ +.|++||+.+.+.+|+
T Consensus 11 ~~f~g~---i~~i~~~~~~~~~~~~~~~~l-~~~~~v~~D~E~~~~~~~~~~~~~~~iqla~~~~~~~~i~~~~~~~~~~ 86 (208)
T 2e6m_A 11 LEFPGS---IVYSYEASDCSFLSEDISMRL-SDGDVVGFDMEWPPIYKPGKRSRVAVIQLCVSESKCYLFHISSMSVFPQ 86 (208)
T ss_dssp CCCCSE---EEEECSHHHHHHHHHHHHHHC-CTTCEEEEEEECCC---CCSCCCCCEEEEECSSSEEEEECGGGCSSCCH
T ss_pred cccCCc---EEEEeCHHHHHHHHHHHHHHh-ccCCEEEEEeecCCCCCCCCCCCeEEEEEecCCCeEEEEECcccccchH
Confidence 467887 445678999986654444321 22478999999998754455788999999985 5799999987767889
Q ss_pred HHHHhhcCCCeEEEEEeecchHHHHhhhcCCccCceeehHHHHHHhCCCCCCCCchHHHHHHHHcCCcCCCCCceeccCC
Q 037014 86 SIKNFLSDPNVVFVGIEVEEIMSKLKNEYGLCIKKKIDVRTLAKLHFPISCLGKPGLKVLAYQLLRLRPWKPKKVCMNNL 165 (198)
Q Consensus 86 ~L~~lL~d~~i~kvG~~~~~D~~~L~~~~gi~~~~~~Dl~~l~~~~l~~~~~~~~~L~~l~~~~l~~~l~K~~~~~~s~W 165 (198)
.|+++|+||+|.||||++++|+..|.+++|+.+.|++|+++++++.++ + ..++||++|++++||..+.|.++.++|||
T Consensus 87 ~L~~lL~d~~i~Kv~~~~k~D~~~L~~~~gi~~~~~fDlt~lAayll~-~-~~~~~L~~L~~~~l~~~~~K~k~~~~s~W 164 (208)
T 2e6m_A 87 GLKMLLENKSIKKAGVGIEGDQWKLLRDFDVKLESFVELTDVANEKLK-C-AETWSLNGLVKHVLGKQLLKDKSIRCSNW 164 (208)
T ss_dssp HHHHHHTCTTSEEEESSHHHHHHHHHHHHCCCCCSEEEHHHHHHHHTT-C-CCCCCHHHHHHHHHSCBCCCCHHHHTSCT
T ss_pred HHHHHhcCCCceEEEEeeHHHHHHHHHHCCCCCCCEEEHHHHHHHHcc-C-CCChhHHHHHHHHcCCCcCCCCCeeeCCC
Confidence 999999999999999999999999987899999999998899999887 3 34789999999999999888767899999
Q ss_pred CCCCCCHHHHHHHHHhHHHHHHHHHHHhcc
Q 037014 166 ESGFLDTELIKFACIDAYVSCAIGTKLLLE 195 (198)
Q Consensus 166 ~~~~L~~~Qi~YAA~Da~~~~~l~~~L~~~ 195 (198)
+.+||+++|+.|||.||+++++||.+|.++
T Consensus 165 ~~~~L~~~q~~YAa~Da~~~~~L~~~L~~~ 194 (208)
T 2e6m_A 165 SNFPLTEDQKLYAATDAYAGLIIYQKLGNL 194 (208)
T ss_dssp TSSSCCHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999754
No 3
>3saf_A Exosome component 10; exoribonuclease, RNA exosome, hydrolase; 2.50A {Homo sapiens} PDB: 3sag_A 3sah_A 2cpr_A
Probab=99.97 E-value=1.3e-30 Score=226.30 Aligned_cols=165 Identities=18% Similarity=0.151 Sum_probs=146.8
Q ss_pred EEcCCHHHHHHHHHHHHhhccCCCeEEEEeeeecCCCCCCCCCceeEEEeeeCCeEEEEEccccCcccHHHHHhhcCCCe
Q 037014 17 TVTSTTSVAENWLLKIRSLHSAQILIVGLNCKWKPHPIPSLSGKIATLQLCVDTKCLILQLLYMDCIPLSIKNFLSDPNV 96 (198)
Q Consensus 17 ~v~~~~~~~~~~i~~~~~~~~~~~~~vg~D~Ew~~~~~~~~~~~~~liQla~~~~~~i~~l~~~~~~~~~L~~lL~d~~i 96 (198)
+++++++++.+|++.+.. ..+||||+||.+. .+..+++++||||+++.+++|++...+.....|+++|+|++|
T Consensus 111 ~~I~t~e~L~~~l~~L~~-----~~~vavDtE~~~~--~~~~~~l~lIQLa~~~~~~lidpl~l~~~l~~L~~lL~dp~i 183 (428)
T 3saf_A 111 HFISSLDELVELNEKLLN-----CQEFAVNLEHHSY--RSFLGLTCLMQISTRTEDFIIDTLELRSDMYILNESLTDPAI 183 (428)
T ss_dssp EEECSHHHHHHHHHHHTT-----CSEEEEEEEEECT--TCSSCEEEEEEEECSSCEEEEETTTTGGGGGGGHHHHTCTTS
T ss_pred EEECCHHHHHHHHHHHhc-----CCeEEEEEEecCC--CCCCCeEEEEEEEeCCcEEEEEeccchhhHHHHHHHHcCCCc
Confidence 466799999999999886 3899999999886 567889999999999999999987654344789999999999
Q ss_pred EEEEEeecchHHHHhhhcCCccCceeehHHHHHHhCCCCCCCCchHHHHHHHHcCCcCCCCCceeccCCCCCCCCHHHHH
Q 037014 97 VFVGIEVEEIMSKLKNEYGLCIKKKIDVRTLAKLHFPISCLGKPGLKVLAYQLLRLRPWKPKKVCMNNLESGFLDTELIK 176 (198)
Q Consensus 97 ~kvG~~~~~D~~~L~~~~gi~~~~~~Dl~~l~~~~l~~~~~~~~~L~~l~~~~l~~~l~K~~~~~~s~W~~~~L~~~Qi~ 176 (198)
.||||++++|+..|.+.+|+.+.+++|+ +++++.+|.+ ++||+.|++++||..++|.. +.+||+++||+++|+.
T Consensus 184 ~KV~H~~k~Dl~~L~~~~Gi~~~~~fDT-~lAa~lL~~~---~~gL~~Lv~~~Lg~~l~K~~--~~sdW~~rpLs~~q~~ 257 (428)
T 3saf_A 184 VKVFHGADSDIEWLQKDFGLYVVNMFDT-HQAARLLNLG---RHSLDHLLKLYCNVDSNKQY--QLADWRIRPLPEEMLS 257 (428)
T ss_dssp EEEESSCHHHHHHHHHHHCCCCSSEEEH-HHHHHHTTCS---CCSHHHHHHHHHCCCCCCTT--TTSCTTCSSCCHHHHH
T ss_pred eEEEeehHHHHHHHHHHcCCCcCceeec-hhHHHHhCCC---CCCHHHHHHHHcCCCCCccc--cccccccCCCCHHHHH
Confidence 9999999999999988999999999997 5667788843 58999999999999999854 7899999999999999
Q ss_pred HHHHhHHHHHHHHHHHhc
Q 037014 177 FACIDAYVSCAIGTKLLL 194 (198)
Q Consensus 177 YAA~Da~~~~~l~~~L~~ 194 (198)
|||.||++++.||..|..
T Consensus 258 YAA~DA~~ll~L~~~L~~ 275 (428)
T 3saf_A 258 YARDDTHYLLYIYDKMRL 275 (428)
T ss_dssp HHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999999999864
No 4
>2hbj_A Exosome complex exonuclease RRP6; RNA metabolism, RNA surveillance, RNA processing, hydrolase, gene regulation; 2.10A {Saccharomyces cerevisiae} SCOP: a.60.8.4 c.55.3.5 PDB: 2hbk_A 2hbl_A* 2hbm_A*
Probab=99.96 E-value=2.1e-28 Score=211.95 Aligned_cols=164 Identities=14% Similarity=0.113 Sum_probs=141.4
Q ss_pred EcCCHHHHHHHHHHHHhhccCCCeEEEEeeeecCCCCCCCCCceeEEEeeeCCeEEEEEccccCcccHHHHHhhcCCCeE
Q 037014 18 VTSTTSVAENWLLKIRSLHSAQILIVGLNCKWKPHPIPSLSGKIATLQLCVDTKCLILQLLYMDCIPLSIKNFLSDPNVV 97 (198)
Q Consensus 18 v~~~~~~~~~~i~~~~~~~~~~~~~vg~D~Ew~~~~~~~~~~~~~liQla~~~~~~i~~l~~~~~~~~~L~~lL~d~~i~ 97 (198)
++++.+++++|++.+.. ..+||+|+||.+. ....+++++||||+++.+||++....+..+..|+++|+|++|.
T Consensus 89 ~I~t~~~L~~~~~~L~~-----~~~vavDtE~~~~--~~~~~~l~liQla~~~~~ylid~l~l~~~l~~L~~lL~d~~i~ 161 (410)
T 2hbj_A 89 WVDTSTELESMLEDLKN-----TKEIAVDLEHHDY--RSYYGIVCLMQISTRERDYLVDTLKLRENLHILNEVFTNPSIV 161 (410)
T ss_dssp EECSHHHHHHHHHHHTT-----CSEEEEEEEEECS--SSSSCEEEEEEEECSSCEEEEETTTTTTTGGGGHHHHTCTTSE
T ss_pred EeCCHHHHHHHHHHHhh-----CCceEEEeeecCC--cCCCCcEEEEEEEECCcEEEEechhhhhhHHHHHHHHcCCCce
Confidence 34468899999998765 3799999999875 3457889999999998899999654433446899999999999
Q ss_pred EEEEeecchHHHHhhhcCCccCceeehHHHHHHhCCCCCCCCchHHHHHHHHcCCcCCCCCceeccCCCCCCCCHHHHHH
Q 037014 98 FVGIEVEEIMSKLKNEYGLCIKKKIDVRTLAKLHFPISCLGKPGLKVLAYQLLRLRPWKPKKVCMNNLESGFLDTELIKF 177 (198)
Q Consensus 98 kvG~~~~~D~~~L~~~~gi~~~~~~Dl~~l~~~~l~~~~~~~~~L~~l~~~~l~~~l~K~~~~~~s~W~~~~L~~~Qi~Y 177 (198)
||||++++|+..|.+++|+.+.+++|++ ++++++|.+ ++||+.|++++||..++|. .+.|||..|||+++|+.|
T Consensus 162 KV~h~~k~Dl~~L~~~~Gi~~~~~fDt~-lAa~LL~~~---~~~L~~L~~~~lg~~l~K~--~~~sdW~~rpL~~~q~~Y 235 (410)
T 2hbj_A 162 KVFHGAFMDIIWLQRDLGLYVVGLFDTY-HASKAIGLP---RHSLAYLLENFANFKTSKK--YQLADWRIRPLSKPMTAA 235 (410)
T ss_dssp EEESSCHHHHHHHHHHHCCCCSSEEEHH-HHHHHHTCS---CCSHHHHHHHHSCCCCCCT--TTTSCTTCSSCCHHHHHH
T ss_pred EEEEehHHHHHHHHHHcCCCcCCEEEcH-HHHHHhCCC---ccCHHHHHHHHcCCCCCcc--ccccCCCCCCCCHHHHHH
Confidence 9999999999999888999999999985 566678732 6899999999999999885 468999999999999999
Q ss_pred HHHhHHHHHHHHHHHhc
Q 037014 178 ACIDAYVSCAIGTKLLL 194 (198)
Q Consensus 178 AA~Da~~~~~l~~~L~~ 194 (198)
||.||++++.||.+|.+
T Consensus 236 Aa~Da~~ll~L~~~L~~ 252 (410)
T 2hbj_A 236 ARADTHFLLNIYDQLRN 252 (410)
T ss_dssp HHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999999874
No 5
>1yt3_A Ribonuclease D, RNAse D; exoribonuclease, exonuclease, hydrolase, tRNA processing, hydrolase,translation; 1.60A {Escherichia coli} SCOP: a.60.8.3 a.60.8.3 c.55.3.5
Probab=99.95 E-value=1.4e-27 Score=204.67 Aligned_cols=163 Identities=14% Similarity=0.131 Sum_probs=141.3
Q ss_pred cCCHHHHHHHHHHHHhhccCCCeEEEEeeeecCCCCCCCCCceeEEEeeeCCeEEEEEccccCcccHHHHHhhcCCCeEE
Q 037014 19 TSTTSVAENWLLKIRSLHSAQILIVGLNCKWKPHPIPSLSGKIATLQLCVDTKCLILQLLYMDCIPLSIKNFLSDPNVVF 98 (198)
Q Consensus 19 ~~~~~~~~~~i~~~~~~~~~~~~~vg~D~Ew~~~~~~~~~~~~~liQla~~~~~~i~~l~~~~~~~~~L~~lL~d~~i~k 98 (198)
+++++++++|++.+.. ..+||+|+||.+. ....+++++||||+++.+||++....+ ..+.|+++|+|++|.|
T Consensus 6 I~t~~~l~~~~~~l~~-----~~~va~D~E~~~~--~~~~~~l~liqla~~~~~~lid~~~l~-~~~~L~~ll~d~~i~K 77 (375)
T 1yt3_A 6 ITTDDALASLCEAVRA-----FPAIALDTEFVRT--RTYYPQLGLIQLFDGEHLALIDPLGIT-DWSPLKAILRDPSITK 77 (375)
T ss_dssp ECSHHHHHHHHHHHTT-----SSEEEEEEEEECC--SCSSCEEEEEEEECSSCEEEECGGGCS-CCHHHHHHHHCTTSEE
T ss_pred eCCHHHHHHHHHHHcC-----CCeEEEEeeecCC--CcCCCceEEEEEecCCcEEEEeCCCCC-ChHHHHHHHcCCCceE
Confidence 4468899999998765 3899999999986 345789999999998889999965443 3478999999999999
Q ss_pred EEEeecchHHHHhhhcCCccCceeehHHHHHHhCCCCCCCCchHHHHHHHHcCCcCCCCCceeccCCCCCCCCHHHHHHH
Q 037014 99 VGIEVEEIMSKLKNEYGLCIKKKIDVRTLAKLHFPISCLGKPGLKVLAYQLLRLRPWKPKKVCMNNLESGFLDTELIKFA 178 (198)
Q Consensus 99 vG~~~~~D~~~L~~~~gi~~~~~~Dl~~l~~~~l~~~~~~~~~L~~l~~~~l~~~l~K~~~~~~s~W~~~~L~~~Qi~YA 178 (198)
|||++++|+..|.+.+|+.+.+++|++ ++++.+|.+ .++||+.|++++||..+.|.+ +.|||..+||+++|+.||
T Consensus 78 v~h~~k~Dl~~L~~~~Gi~~~~~fDt~-lAa~lL~~~--~~~~L~~L~~~~l~~~l~K~~--~~sdw~~rpL~~~q~~YA 152 (375)
T 1yt3_A 78 FLHAGSEDLEVFLNVFGELPQPLIDTQ-ILAAFCGRP--MSWGFASMVEEYSGVTLDKSE--SRTDWLARPLTERQCEYA 152 (375)
T ss_dssp EESSCHHHHHHHHHHHSSCCSSEEEHH-HHHHHTTCC--TTCCHHHHHHHHHCCCCCCTT--TTSCTTSSSCCHHHHHHH
T ss_pred EEeeHHHHHHHHHHHcCCCCCcEEEcH-HHHHHcCCC--CChhHHHHHHHHcCCCCCCCc--ccCCCCCCCCCHHHHHHH
Confidence 999999999999878999999999985 566788742 478999999999999999865 579999999999999999
Q ss_pred HHhHHHHHHHHHHHhc
Q 037014 179 CIDAYVSCAIGTKLLL 194 (198)
Q Consensus 179 A~Da~~~~~l~~~L~~ 194 (198)
|.||++++.||..|.+
T Consensus 153 a~Da~~l~~L~~~L~~ 168 (375)
T 1yt3_A 153 AADVWYLLPITAKLMV 168 (375)
T ss_dssp HHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999999874
No 6
>3cym_A Uncharacterized protein BAD_0989; structural genomics, unknown function; 2.10A {Bifidobacterium adolescentis atcc 1570ORGANISM_TAXID}
Probab=99.91 E-value=9e-24 Score=184.35 Aligned_cols=162 Identities=14% Similarity=0.087 Sum_probs=135.3
Q ss_pred EcCCHHHHHHHHHHHHhhccCCCeEEEEeeeecCCCCCCCCCceeEEEeeeCCe-EEEEEccccC---cccHHHHHhhcC
Q 037014 18 VTSTTSVAENWLLKIRSLHSAQILIVGLNCKWKPHPIPSLSGKIATLQLCVDTK-CLILQLLYMD---CIPLSIKNFLSD 93 (198)
Q Consensus 18 v~~~~~~~~~~i~~~~~~~~~~~~~vg~D~Ew~~~~~~~~~~~~~liQla~~~~-~~i~~l~~~~---~~~~~L~~lL~d 93 (198)
++++++++.+|++.+... ..+||+|+||.+. ....+++++||||+++. +++|+..... .-...|+++|+|
T Consensus 20 ~I~t~e~L~~~~~~L~~~----~~~vavDtE~~~~--~~~~~~l~liQla~~~~~~~lid~l~~~~~~~~l~~L~~lL~d 93 (440)
T 3cym_A 20 VIDTLPAFRDYCSELASS----HGSLAADAERASG--FRYGHEDWLVQFKRDGAGIGLLDPQALAAAGADWNDFNRAVGD 93 (440)
T ss_dssp EECSHHHHHHHHHHHHSC----EEEEEEEEEECTT--TSSSCCEEEEEEEEETTEEEEECHHHHHHTTCCHHHHHHHHTT
T ss_pred eeCCHHHHHHHHHHHHhc----CCeEEEEeeecCC--CCCCCCEEEEEEEECCCcEEEEEcCCccccccCHHHHHHHHCC
Confidence 344789999999987651 2789999999876 34578899999998554 7887763311 114689999999
Q ss_pred CCeEEEEEeecchHHHHhhhcCCccCceeehHHHHHHhCCCCCCCCchHHHHHHHHcCCcCCCCCceeccCCCCCCCCHH
Q 037014 94 PNVVFVGIEVEEIMSKLKNEYGLCIKKKIDVRTLAKLHFPISCLGKPGLKVLAYQLLRLRPWKPKKVCMNNLESGFLDTE 173 (198)
Q Consensus 94 ~~i~kvG~~~~~D~~~L~~~~gi~~~~~~Dl~~l~~~~l~~~~~~~~~L~~l~~~~l~~~l~K~~~~~~s~W~~~~L~~~ 173 (198)
+ .||||++++|+..|. ++|+.+.++||+ +++.++++. . ++||+.|++.++|..+.|. .+.|||+.+||+++
T Consensus 94 ~--~KV~h~~k~Dl~~L~-~~gi~~~~~fDt-~lAa~lL~~-~--~~gL~~L~~~~lg~~~~K~--~~~sdw~~rpLs~~ 164 (440)
T 3cym_A 94 A--VWILHDSLQDLPGFD-ELGMEPQRLFDT-EIAARLLGL-K--RFGLAAVTEHFLGLTLAKE--HSAADWSYRPLPRD 164 (440)
T ss_dssp C--EEEESSHHHHHHHHH-HHTCCCCEEEEH-HHHHHHTTC-S--SCSHHHHHHHHHCEECCCC--CTTCCTTCSSCCHH
T ss_pred C--CEEEEcCHHHHHHHH-HcCCcCCceehH-HHHHHHhCC-C--CCCHHHHHHHHhCCCcccc--cccCCCcCCCCCHH
Confidence 7 699999999999995 999999999998 678889983 2 8999999999999999885 46799999999999
Q ss_pred HHHHHHHhHHHHHHHHHHHhc
Q 037014 174 LIKFACIDAYVSCAIGTKLLL 194 (198)
Q Consensus 174 Qi~YAA~Da~~~~~l~~~L~~ 194 (198)
|+.|||.||++++.||..|..
T Consensus 165 q~~YAa~Da~~Ll~L~~~L~~ 185 (440)
T 3cym_A 165 WRNYAALDVELLIELETKMRA 185 (440)
T ss_dssp HHHHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999864
No 7
>2kfn_A Klenow fragment of DNA polymerase I; complex (polymerase/DNA), exonuclease, transferase, transferase/DNA complex; HET: US1; 2.03A {Escherichia coli} SCOP: c.55.3.5 e.8.1.1 PDB: 1d9f_A* 1d9d_A* 1krp_A* 1ksp_A* 1qsl_A* 1kfs_A* 2kfz_A* 2kzm_A* 2kzz_A* 1dpi_A* 1kfd_A* 1kln_A* 1d8y_A*
Probab=99.78 E-value=2.9e-18 Score=154.98 Aligned_cols=163 Identities=18% Similarity=0.230 Sum_probs=128.3
Q ss_pred cCCHHHHHHHHHHHHhhccCCCeEEEEeeeecCCCCCCCCCceeEEEeee-CCeEEEEEcccc-----Cc-----ccHHH
Q 037014 19 TSTTSVAENWLLKIRSLHSAQILIVGLNCKWKPHPIPSLSGKIATLQLCV-DTKCLILQLLYM-----DC-----IPLSI 87 (198)
Q Consensus 19 ~~~~~~~~~~i~~~~~~~~~~~~~vg~D~Ew~~~~~~~~~~~~~liQla~-~~~~~i~~l~~~-----~~-----~~~~L 87 (198)
+.+++++++|++.+.. ..+|+||+|+++. ....++++.||+|. ++..+.+++.+. +. +.+.|
T Consensus 10 I~~~~~l~~~~~~l~~-----~~~va~DtEttgl--~~~~~~iv~I~~~~~~g~~~yip~~~~~~~~~~~l~~~~vl~~L 82 (605)
T 2kfn_A 10 ILDEETLKAWIAKLEK-----APVFAFDTETDSL--DNISANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERALELL 82 (605)
T ss_dssp CCSHHHHHHHHHHHHT-----SSSEEEEEEESCS--CTTTCCEEEEEEEEETTEEEEEECCCCSTTCCCCCCHHHHHHHH
T ss_pred ecCHHHHHHHHHhccc-----CCeEEEEEecCCC--CcccCceEEEEEEEcCCcEEEEeccccccccccccCHHHHHHHH
Confidence 4468899999998765 3789999999987 44567899999996 444444466541 11 22579
Q ss_pred HHhhcCCCeEEEEEeecchHHHHhhhcCCccCc-eeehHHHHHHhCCCCCCCCchHHHHHHHHcCCcCC-------CCCc
Q 037014 88 KNFLSDPNVVFVGIEVEEIMSKLKNEYGLCIKK-KIDVRTLAKLHFPISCLGKPGLKVLAYQLLRLRPW-------KPKK 159 (198)
Q Consensus 88 ~~lL~d~~i~kvG~~~~~D~~~L~~~~gi~~~~-~~Dl~~l~~~~l~~~~~~~~~L~~l~~~~l~~~l~-------K~~~ 159 (198)
+++|+|+++.|||||++.|+..|. .+|+.+.+ ++|+ ++++++++ |...+++|++|++++||.... |.+
T Consensus 83 ~~~L~d~~i~kV~hnak~D~~~L~-~~Gi~l~~~~~DT-~laayLL~-p~~~~~~L~~La~~~Lg~~~i~~~~~~gKg~- 158 (605)
T 2kfn_A 83 KPLLEDEKALKVGQNLKYDRGILA-NYGIELRGIAFDT-MLESYILN-SVAGRHDMDSLAERWLKHKTITFEEIAGKGK- 158 (605)
T ss_dssp HHHHTCTTSCEEESSHHHHHHHHH-TTTCCCCCEEEEH-HHHHHHHC-TTSSCCSHHHHHHHHSCCCCCCHHHHHCSST-
T ss_pred HHHHcCCCCeEEEECcHHHHHHHH-HCCCCCCCccccH-HHHHHHhC-CCCCCCCHHHHHHHhcCCCcccHHHHhCCCc-
Confidence 999999999999999999999995 58999888 5675 66777776 555589999999999987643 332
Q ss_pred eeccCCCCCCCCHHHHHHHHHhHHHHHHHHHHHhc
Q 037014 160 VCMNNLESGFLDTELIKFACIDAYVSCAIGTKLLL 194 (198)
Q Consensus 160 ~~~s~W~~~~L~~~Qi~YAA~Da~~~~~l~~~L~~ 194 (198)
+.++|...|| +++.+||+.||+++++||.+|..
T Consensus 159 -~~~~~~~~~l-e~~~~yAa~Da~~~~~L~~~L~~ 191 (605)
T 2kfn_A 159 -NQLTFNQIAL-EEAGRYAAEDADVTLQLHLKMWP 191 (605)
T ss_dssp -TCCCGGGSCH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -ccCCcccCCH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3468988888 78999999999999999999875
No 8
>3pv8_A DNA polymerase I; DNA polymerase I, protein-DNA complex, thymine-adenine, CLOS conformation; HET: DNA 2DT D3T; 1.52A {Geobacillus kaustophilus} PDB: 3px0_A* 3px4_A* 3px6_A* 3thv_A* 3ti0_A* 4dse_A* 4dsf_A* 4ds4_A* 4dqp_A* 4dqi_A* 4ds5_A* 4e0d_A* 4dqr_A* 4dqq_A* 3tan_A* 3tap_A* 3taq_A* 3tar_A* 4dqs_A* 3hp6_A* ...
Probab=99.70 E-value=5.7e-17 Score=145.79 Aligned_cols=147 Identities=10% Similarity=-0.077 Sum_probs=121.8
Q ss_pred eEEEEeeeecCCCCCCCCCceeEEEeeeCCeEEEEEccccCcccHHHHHhhcCCCeEEEEEeecchHHHHhhhcCCccCc
Q 037014 41 LIVGLNCKWKPHPIPSLSGKIATLQLCVDTKCLILQLLYMDCIPLSIKNFLSDPNVVFVGIEVEEIMSKLKNEYGLCIKK 120 (198)
Q Consensus 41 ~~vg~D~Ew~~~~~~~~~~~~~liQla~~~~~~i~~l~~~~~~~~~L~~lL~d~~i~kvG~~~~~D~~~L~~~~gi~~~~ 120 (198)
....+|+|.... .....++++||+|+++.++.+++.+.. ..+.|+++|+|+++.||||++|+|+..| ..+|+.+.+
T Consensus 30 ~~~aldtE~~~~--~~~~a~Lvgisla~~~~a~yIp~~~~~-~l~~Lk~lLed~~i~KV~hn~K~Dl~vL-~~~Gi~l~g 105 (592)
T 3pv8_A 30 DKAALVVEVVEE--NYHDAPIVGIAVVNEHGRFFLRPETAL-ADPQFVAWLGDETKKKSMFDSKRAAVAL-KWKGIELCG 105 (592)
T ss_dssp SEEEEEEECCSS--SCTTCCCCEEEEEETTEEEEECHHHHT-TCHHHHHHHTCTTSEEEESSHHHHHHHH-HHTTCCCCC
T ss_pred cCcEEEEEEcCC--ccCcccEEEEEEEcCCceEEEccchhh-HHHHHHHHHhCCCCeEEEechHHHHHHH-HHcCCCCCC
Confidence 456899999887 567889999999999987777876533 3468999999999999999999999999 568999987
Q ss_pred eeehHHHHHHhCCCCCCCCchHHHHHHHHcCCcCCCCCceeccCCCC---CCCCHHHHHHHHHhHHHHHHHHHHHhc
Q 037014 121 KIDVRTLAKLHFPISCLGKPGLKVLAYQLLRLRPWKPKKVCMNNLES---GFLDTELIKFACIDAYVSCAIGTKLLL 194 (198)
Q Consensus 121 ~~Dl~~l~~~~l~~~~~~~~~L~~l~~~~l~~~l~K~~~~~~s~W~~---~~L~~~Qi~YAA~Da~~~~~l~~~L~~ 194 (198)
.+.+.++++|+++ |..++++|++|++++||..+.+.+ ...+|++ .+.++++..|||.||.++++|+..|..
T Consensus 106 ~~fDTmLAAYLL~-p~~~~~~L~~La~~yLg~~l~~~e--e~~gkg~~~~~~~~e~~~~YAa~DA~~l~~L~~~L~~ 179 (592)
T 3pv8_A 106 VSFDLLLAAYLLD-PAQGVDDVAAAAKMKQYEAVRPDE--AVYGKGAKRAVPDEPVLAEHLVRKAAAIWELERPFLD 179 (592)
T ss_dssp EEEEHHHHHHHHC-GGGCCCSHHHHHGGGTCCSSCCHH--HHHCSGGGCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHcC-CCCCCCCHHHHHHHHcCCCCchHH--HhcCccccccCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6544688999887 655679999999999999988754 3356664 445578899999999999999998864
No 9
>1x9m_A DNA polymerase; DNA ploymerase, N-2-acetylaminofluorene, replication block, mutagenesis, transferase/electron transport/DNA complex; HET: DNA 2DT 8FG; 2.10A {Enterobacteria phage T7} SCOP: c.55.3.5 e.8.1.1 PDB: 1skr_A* 1skw_A* 1sl0_A* 1sks_A* 1sl2_A* 1t7p_A* 1t8e_A* 1tk0_A* 1tk5_A* 1tk8_A* 1tkd_A* 1sl1_A* 1x9s_A* 1x9w_A* 1zyq_A* 2ajq_A*
Probab=99.55 E-value=3.5e-15 Score=136.79 Aligned_cols=146 Identities=12% Similarity=0.016 Sum_probs=112.7
Q ss_pred EEEEeeeecCCCCCCCCCceeEEEeeeC--CeEEEEEccccCcccHHHHHhhcCCCeEEEEEee-cchHHHHhhhc----
Q 037014 42 IVGLNCKWKPHPIPSLSGKIATLQLCVD--TKCLILQLLYMDCIPLSIKNFLSDPNVVFVGIEV-EEIMSKLKNEY---- 114 (198)
Q Consensus 42 ~vg~D~Ew~~~~~~~~~~~~~liQla~~--~~~~i~~l~~~~~~~~~L~~lL~d~~i~kvG~~~-~~D~~~L~~~~---- 114 (198)
+|+||+|+++. .....+++++|++.. ..+++++....+...+.|+++|+ +++.|||||+ ++|+..|.+.+
T Consensus 1 ~vv~D~ETtGl--~~~~d~i~~iqi~~~~~~~~~~~~p~~i~~~l~~L~~~l~-~~~~kV~HNa~kfD~~~L~~~~~~~~ 77 (698)
T 1x9m_A 1 MIVSDIEANAL--LESVTKFHCGVIYDYSTAEYVSYRPSDFGAYLDALEAEVA-RGGLIVFHNGHKYDVPALTKLAKLQL 77 (698)
T ss_dssp CEEEEEEESSC--GGGCCCEEEEEEEETTTTEEEEECGGGHHHHHHHHHHHHH-TTCCEEESSTTTTHHHHHHHHHHHHH
T ss_pred CEEEEcCCCCc--CCCCCEEEEEEEEecCCCcEEEEChHHHHHHHHHHHHHHh-cCCeEEEcCChHHHHHHHHHhhhhcc
Confidence 48999999987 445679999999984 46888876544334578999999 9999999998 99999997654
Q ss_pred --CCccC-c-eeehHHHHHHhCCCCCCCCchHHHHHHHHc-------CCcC-----C-----------CCCc-eeccCCC
Q 037014 115 --GLCIK-K-KIDVRTLAKLHFPISCLGKPGLKVLAYQLL-------RLRP-----W-----------KPKK-VCMNNLE 166 (198)
Q Consensus 115 --gi~~~-~-~~Dl~~l~~~~l~~~~~~~~~L~~l~~~~l-------~~~l-----~-----------K~~~-~~~s~W~ 166 (198)
|+.+. + .+|+ ++++++++ |...+++|++|++++| |..+ + |.++ ...++|.
T Consensus 78 ~~Gi~l~~~~~~DT-mlaayLL~-p~~~~~~L~~La~~~L~~sL~~~g~~lg~~Ki~~~~~~g~~~~~kg~~~~~~~~~~ 155 (698)
T 1x9m_A 78 NREFHLPRENCIDT-LVLSRLIH-SNLKDTDMGLLRSGKLPGALEAWGYRLGEMKGEYKDDFKRMLEEQGEEYVDGMEWW 155 (698)
T ss_dssp CCCCCCCGGGEEEH-HHHHHHHT-TTSCCCTTTTSCGGGSCSCCCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCTTGGGT
T ss_pred cCCccCCCCcchhH-HHHHHHhC-CCCCCCCHHHHHHHHcccchhhhcccccccccCHHHHhCcccccccccccccCCcc
Confidence 88877 4 5665 66777777 5556889999999997 5333 1 2222 1123887
Q ss_pred CCCCCHHHHHHHHHhHHHHHHHHHHHhc
Q 037014 167 SGFLDTELIKFACIDAYVSCAIGTKLLL 194 (198)
Q Consensus 167 ~~~L~~~Qi~YAA~Da~~~~~l~~~L~~ 194 (198)
. +++++.+||+.||.+.++||.+|..
T Consensus 156 ~--~~~~~~~YA~~Da~~t~~L~~~L~~ 181 (698)
T 1x9m_A 156 N--FNEEMMDYNVQDVVVTKALLEKLLS 181 (698)
T ss_dssp S--CCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred c--cCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 7799999999999999999999976
No 10
>4dfk_A DNA polymerase I, thermostable; DNA polymerase, transferase-DNA complex; HET: DNA DOC 0L5; 1.65A {Thermus aquaticus} PDB: 1jxe_A* 3ktq_A* 3lwl_A* 3lwm_A* 3m8s_A* 3m8r_A* 3oju_A* 3rr7_A* 3rr8_A* 3rrg_A* 3ojs_A* 3rtv_A* 3sv3_A* 3sv4_A* 3syz_A* 3sz2_A* 3t3f_A* 4df4_A* 4df8_A* 4dfj_A* ...
Probab=99.08 E-value=9.6e-11 Score=104.36 Aligned_cols=117 Identities=9% Similarity=-0.080 Sum_probs=95.2
Q ss_pred CeEEEEeeeecCCCCCCCCCceeEEEeeeCCeEEEEEccccCcccHHHHHhhcCCCeEEEEEeecchHHHHhhhcCCccC
Q 037014 40 ILIVGLNCKWKPHPIPSLSGKIATLQLCVDTKCLILQLLYMDCIPLSIKNFLSDPNVVFVGIEVEEIMSKLKNEYGLCIK 119 (198)
Q Consensus 40 ~~~vg~D~Ew~~~~~~~~~~~~~liQla~~~~~~i~~l~~~~~~~~~L~~lL~d~~i~kvG~~~~~D~~~L~~~~gi~~~ 119 (198)
++-+++|||+... .....++++||+|.++.++.++ ...+.|++||+| +.||||+++.|+. .+|+.+.
T Consensus 10 p~~valDtE~~~~--~~~~a~Lvgi~la~~~~a~~i~-----~~l~~l~~~l~d--~~kV~hn~K~Dl~----~~Gi~~~ 76 (540)
T 4dfk_A 10 PEGAFVGFVLSRK--EPMWADLLALAAARGGRVHRAP-----EPYKALRDLKEA--RGLLAKDLSVLAL----REGLGLP 76 (540)
T ss_dssp CTTCEEEEEESSS--CTTTCCEEEEEEEETTEEEECS-----SHHHHHTTCSSB--CSTTHHHHHHHHH----HTTCCCC
T ss_pred CCceEEEEEecCC--ccCcccEEEEEEEcCCEEEEeh-----hhHHHHHHHHcC--CCEEEeccHHHHH----HcCCCCC
Confidence 3459999999987 5678899999999988877654 234789999998 8899999999999 5788877
Q ss_pred ceeehHHHHHHhCCCCCCCCchHHHHHHHHcCCcCCCCCceeccCCCCCCCCHHHHHHHHHhHHHHHHHHHHHhc
Q 037014 120 KKIDVRTLAKLHFPISCLGKPGLKVLAYQLLRLRPWKPKKVCMNNLESGFLDTELIKFACIDAYVSCAIGTKLLL 194 (198)
Q Consensus 120 ~~~Dl~~l~~~~l~~~~~~~~~L~~l~~~~l~~~l~K~~~~~~s~W~~~~L~~~Qi~YAA~Da~~~~~l~~~L~~ 194 (198)
..+|+ ++++++++ |. +++|++||+++++. |++ +|+.||.++++||.+|..
T Consensus 77 ~~fDT-~laAyLL~-p~--~~~L~~La~~yl~~------------~gk---------~a~~DA~~t~~L~~~L~~ 126 (540)
T 4dfk_A 77 PGDDP-MLLAYLLD-PS--NTTPEGVARRYGGE------------WTE---------EAGERAALSERLFANLWG 126 (540)
T ss_dssp BCCCH-HHHHHHHC-TT--CCCHHHHHHHHTSC------------CCS---------CHHHHHHHHHHHHHHHHH
T ss_pred cceeH-HHHHHHhC-CC--CCCHHHHHHHHhhh------------hcc---------chHHHHHHHHHHHHHHHH
Confidence 55664 77778887 65 78999999999986 221 367999999999998875
No 11
>3v9w_A Ribonuclease T; DEDD nucleases family, EXO-nucleases, hydrolase-DNA complex; HET: DNA; 1.70A {Escherichia coli} PDB: 3ngy_A 3v9u_A* 3ngz_A* 3va3_A* 3v9z_A* 3nh0_A 3nh2_A 3nh1_A* 3v9s_A* 3v9x_A* 3va0_A* 2is3_A
Probab=98.14 E-value=9.7e-06 Score=64.39 Aligned_cols=80 Identities=13% Similarity=-0.018 Sum_probs=59.7
Q ss_pred CCeEEEEEeecchHHHHhhh---cCCcc-----CceeehHHHHHHhCCCCCCCCchHHHHHHHHcCCcCCCCCceeccCC
Q 037014 94 PNVVFVGIEVEEIMSKLKNE---YGLCI-----KKKIDVRTLAKLHFPISCLGKPGLKVLAYQLLRLRPWKPKKVCMNNL 165 (198)
Q Consensus 94 ~~i~kvG~~~~~D~~~L~~~---~gi~~-----~~~~Dl~~l~~~~l~~~~~~~~~L~~l~~~~l~~~l~K~~~~~~s~W 165 (198)
++.+.|||+++.|+..|.+. +|+.. ...+|+..++...++ ..+|..|++.+ |.+...
T Consensus 133 ~~~~lVahN~~fD~~~L~~~~~~~g~~~~p~~~~~~~Dt~~la~~~~p-----~~~L~~l~~~~-gi~~~~--------- 197 (235)
T 3v9w_A 133 NRAIMVAHNANFDHSFMMAAAERASLKRNPFHPFATFDTAALAGLALG-----QTVLSKACQTA-GMDFDS--------- 197 (235)
T ss_dssp CEEEEEETTTHHHHHHHHHHHHHTTCCCCCEEEEEEEEHHHHHHHHHS-----CCSHHHHHHHH-TCCCCT---------
T ss_pred CCcEEEEeChHHHHHHHHHHHHHcCCCCCCCCCCcEEEhHHHHHHHhC-----CCCHHHHHHHc-CCCCCC---------
Confidence 57889999999999999653 47743 247899888776653 45899999875 543321
Q ss_pred CCCCCCHHHHHHHHHhHHHHHHHHHHHhcc
Q 037014 166 ESGFLDTELIKFACIDAYVSCAIGTKLLLE 195 (198)
Q Consensus 166 ~~~~L~~~Qi~YAA~Da~~~~~l~~~L~~~ 195 (198)
.+-++|..||.++.+|+.+|.++
T Consensus 198 -------~~~H~Al~DA~~ta~l~~~l~~~ 220 (235)
T 3v9w_A 198 -------TQAHSALYDTERTAVLFCEIVNR 220 (235)
T ss_dssp -------TTTTCHHHHHHHHHHHHHHHHHH
T ss_pred -------CCCcChHHHHHHHHHHHHHHHHH
Confidence 12467899999999999998753
No 12
>1bgx_T TAQ DNA polymerase; DNA polymerase, FAB, PCR, inhibition, helix-coil dynamics, inhibitor design, complex (polymerase/inhibitor); 2.30A {Thermus aquaticus} SCOP: a.60.7.1 c.120.1.2 c.55.3.5 e.8.1.1 PDB: 1cmw_A 1tau_A* 1taq_A*
Probab=98.05 E-value=4.7e-06 Score=77.71 Aligned_cols=113 Identities=11% Similarity=-0.013 Sum_probs=83.0
Q ss_pred eEEEEeeeecCCCCCCCCCceeEEEeeeCCe-EEEEEccccCcccHHHHHhhcCCCeEEEEEeecchHHHHhhhcCCccC
Q 037014 41 LIVGLNCKWKPHPIPSLSGKIATLQLCVDTK-CLILQLLYMDCIPLSIKNFLSDPNVVFVGIEVEEIMSKLKNEYGLCIK 119 (198)
Q Consensus 41 ~~vg~D~Ew~~~~~~~~~~~~~liQla~~~~-~~i~~l~~~~~~~~~L~~lL~d~~i~kvG~~~~~D~~~L~~~~gi~~~ 119 (198)
..+++|+|... .....+| +++|..++ ++.+++ + . +.|+++|+|+.+ ++|.|...| ..+|+.+.
T Consensus 305 ~~va~d~et~~----~~~~~l~-vg~a~~~g~a~yvp~-~--~--~~Lk~lLed~~i-----n~K~d~~~L-~~~Gi~~~ 368 (832)
T 1bgx_T 305 AFVGFVLSRKE----PMWADLL-ALAAARGGRVHRAPE-P--Y--KALRDLKEARGL-----LAKDLSVLA-LREGLGLP 368 (832)
T ss_dssp CCBEEECSSSC----TTTCCCC-EEECBSSSEEECCSC-H--H--HHHHHCSSBCBT-----THHHHHHHH-HHHTCCCC
T ss_pred ceEEEEEecCC----cccCcee-EEEEEcCCCEEEEEC-C--H--HHHHHHHhCCCC-----ChHHHHHHH-HHcCCccC
Confidence 55889998665 1234553 45886433 444466 3 1 579999999997 999999999 46999999
Q ss_pred ceeehHHHHHHhCCCCCCCCchHHHHHHHHcCCcCCCCCceeccCCCCCCCCHHHHHHHHHhHHHHHHHHHHHhc
Q 037014 120 KKIDVRTLAKLHFPISCLGKPGLKVLAYQLLRLRPWKPKKVCMNNLESGFLDTELIKFACIDAYVSCAIGTKLLL 194 (198)
Q Consensus 120 ~~~Dl~~l~~~~l~~~~~~~~~L~~l~~~~l~~~l~K~~~~~~s~W~~~~L~~~Qi~YAA~Da~~~~~l~~~L~~ 194 (198)
.+.+.++++++++ |. .++|++|++++ | | +|. ++ || .||.++++++..|..
T Consensus 369 -~~~Dt~laayLl~-p~--~~~l~~l~~~~-g----k-------~~~------~~--ya-~da~~~~~l~~~l~~ 418 (832)
T 1bgx_T 369 -PGDDPMLLAYLLD-PS--NTTPEGVARRY-G----G-------EWT------EE--AG-ERAALSERLFANLWG 418 (832)
T ss_dssp -BCCCHHHHHHHHC-TT--CCSTTHHHHHH-S----C-------CCC------SS--HH-HHHHHHHHHHHHHHH
T ss_pred -cccCHHHHHHHcC-CC--CCCHHHHHHHh-C----C-------Cch------HH--HH-HHHHHHHHHHHHHHH
Confidence 6555688999887 54 78999999998 3 2 132 12 88 699999999999864
No 13
>1wlj_A Interferon stimulated gene 20KDA; exoribonuclease, hydrolase; HET: U5P; 1.90A {Homo sapiens} SCOP: c.55.3.5
Probab=97.65 E-value=0.00011 Score=56.43 Aligned_cols=92 Identities=18% Similarity=0.099 Sum_probs=61.8
Q ss_pred HHHHHhhcCCCeEEEEEeecchHHHHhhhcCCccCceeehHHHHH--HhCCCCCCCCchHHHHHHHHcCCcCCCCCceec
Q 037014 85 LSIKNFLSDPNVVFVGIEVEEIMSKLKNEYGLCIKKKIDVRTLAK--LHFPISCLGKPGLKVLAYQLLRLRPWKPKKVCM 162 (198)
Q Consensus 85 ~~L~~lL~d~~i~kvG~~~~~D~~~L~~~~gi~~~~~~Dl~~l~~--~~l~~~~~~~~~L~~l~~~~l~~~l~K~~~~~~ 162 (198)
+.+.+++.+ -+.|||++..|...|.+.+. ....+|+..+.. ...+.|...+.+|+.+++.++|.++....
T Consensus 75 ~~~~~~l~~--~~lV~hn~~fD~~~L~~~~~--~~~~idt~~~~~~~~~~~~p~~~~~~L~~l~~~~lgi~~~~~~---- 146 (189)
T 1wlj_A 75 LEILQLLKG--KLVVGHDLKHDFQALKEDMS--GYTIYDTSTDRLLWREAKLDHCRRVSLRVLSERLLHKSIQNSL---- 146 (189)
T ss_dssp HHHHHHHTT--SEEEESSHHHHHHHTTCCCT--TCEEEEGGGCHHHHHHHTC-----CCHHHHHHHHTCCCCSCCT----
T ss_pred HHHHHHHCC--CEEEECCcHHHHHHHHHhCC--CCceechHhhhhhhhcccCCCCCCccHHHHHHHHcCCCCCCCC----
Confidence 457777764 57899999999999966543 235789877642 11122333588999999998897765421
Q ss_pred cCCCCCCCCHHHHHHHHHhHHHHHHHHHHHhcc
Q 037014 163 NNLESGFLDTELIKFACIDAYVSCAIGTKLLLE 195 (198)
Q Consensus 163 s~W~~~~L~~~Qi~YAA~Da~~~~~l~~~L~~~ 195 (198)
+-+-|..||.++.+|+.++.++
T Consensus 147 -----------~~H~Al~Da~ata~l~~~l~~~ 168 (189)
T 1wlj_A 147 -----------LGHSSVEDARATMELYQISQRI 168 (189)
T ss_dssp -----------TCCCHHHHHHHHHHHHHHHHHH
T ss_pred -----------CCcCcHHHHHHHHHHHHHHHHH
Confidence 1234789999999999988753
No 14
>2p1j_A POLIII, DNA polymerase III POLC-type; structural genomics, exonuclease, PSI-2, protein structure initiative; HET: DNA; 2.50A {Thermotoga maritima MSB8}
Probab=97.59 E-value=0.00093 Score=50.94 Aligned_cols=88 Identities=22% Similarity=0.120 Sum_probs=64.7
Q ss_pred HHHHHhhcCCCeEEEEEeecchHHHHhhh---cCCcc--CceeehHHHHHHhCCCCCCCCchHHHHHHHHcCCcCCCCCc
Q 037014 85 LSIKNFLSDPNVVFVGIEVEEIMSKLKNE---YGLCI--KKKIDVRTLAKLHFPISCLGKPGLKVLAYQLLRLRPWKPKK 159 (198)
Q Consensus 85 ~~L~~lL~d~~i~kvG~~~~~D~~~L~~~---~gi~~--~~~~Dl~~l~~~~l~~~~~~~~~L~~l~~~~l~~~l~K~~~ 159 (198)
+.+.+++.+ -+.|||+...|...|.+. +|+.. ...+|+..+++..++ ..+.+|+++++. +|.+...
T Consensus 84 ~~~~~~l~~--~~lv~hn~~fD~~~L~~~~~~~g~~~~~~~~iDt~~l~~~~~~---~~~~~L~~l~~~-~gi~~~~--- 154 (186)
T 2p1j_A 84 PEFLGFLED--SIIVAHNANFDYRFLRLWIKKVMGLDWERPYIDTLALAKSLLK---LRSYSLDSVVEK-LGLGPFR--- 154 (186)
T ss_dssp HHHHHHSSS--CEEEETTHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHTC---CSCCSHHHHHHH-TTCCSTT---
T ss_pred HHHHHHHCC--CEEEEECcHHHHHHHHHHHHHcCCCCCCCCEEeHHHHHHHHhh---cCCCCHHHHHHH-cCCCCCC---
Confidence 345667764 468999999999999753 45543 467999888876653 247899999986 5654321
Q ss_pred eeccCCCCCCCCHHHHHHHHHhHHHHHHHHHHHhccc
Q 037014 160 VCMNNLESGFLDTELIKFACIDAYVSCAIGTKLLLEE 196 (198)
Q Consensus 160 ~~~s~W~~~~L~~~Qi~YAA~Da~~~~~l~~~L~~~~ 196 (198)
-+.|..||.++.+|+.+|.++.
T Consensus 155 ---------------~H~Al~Da~~t~~l~~~l~~~~ 176 (186)
T 2p1j_A 155 ---------------HHRALDDARVTAQVFLRFVEMM 176 (186)
T ss_dssp ---------------CCHHHHHHHHHHHHHHHHTTCC
T ss_pred ---------------CcCHHHHHHHHHHHHHHHHHHH
Confidence 2578999999999999998654
No 15
>3mxm_B Three prime repair exonuclease 1; RNAse H-like fold, polyproline type II helix, hydrolase-DNA; HET: DNA; 1.75A {Mus musculus} SCOP: c.55.3.5 PDB: 3mxj_B 2ioc_B 3mxi_B* 3b6o_A* 2o4g_A* 3b6p_A* 2o4i_A 2oa8_A
Probab=97.23 E-value=0.0011 Score=52.78 Aligned_cols=92 Identities=14% Similarity=0.004 Sum_probs=63.2
Q ss_pred HHHHHhhcC--CCeEEEEEe-ecchHHHHhh---hcCCcc--C--ceeehHHHHHHhC----CC--CCCCCchHHHHHHH
Q 037014 85 LSIKNFLSD--PNVVFVGIE-VEEIMSKLKN---EYGLCI--K--KKIDVRTLAKLHF----PI--SCLGKPGLKVLAYQ 148 (198)
Q Consensus 85 ~~L~~lL~d--~~i~kvG~~-~~~D~~~L~~---~~gi~~--~--~~~Dl~~l~~~~l----~~--~~~~~~~L~~l~~~ 148 (198)
+.|.+|+.+ +..+.|||| +..|...|.+ .+|+.. . .++|+..+++.+. +. +...+++|.+++++
T Consensus 106 ~~~~~fl~~~~~~~~lVaHNav~FD~~fL~~~~~r~g~~~~~~~~~~iDtl~l~r~l~~~~~p~~~~~~~~~~L~~l~~~ 185 (242)
T 3mxm_B 106 ILLRAFLQRQPQPCCLVAHNGDRYDFPLLQTELARLSTPSPLDGTFCVDSIAALKALEQASSPSGNGSRKSYSLGSIYTR 185 (242)
T ss_dssp HHHHHHHHTSCSSEEEEETTTTTTHHHHHHHHHHTSSSCCTTTTCEEEEHHHHHHHHHHHHCC------CCCSHHHHHHH
T ss_pred HHHHHHHhcCCCCCEEEEcCChHhhHHHHHHHHHHcCCCCCccCCeEeehHHHHHHHHhhcCccccCCCCCcCHHHHHHH
Confidence 345666765 236789999 5999999975 356653 2 4689988876432 11 22458899999999
Q ss_pred HcCCcCCCCCceeccCCCCCCCCHHHHHHHHHhHHHHHHHHHHHhc
Q 037014 149 LLRLRPWKPKKVCMNNLESGFLDTELIKFACIDAYVSCAIGTKLLL 194 (198)
Q Consensus 149 ~l~~~l~K~~~~~~s~W~~~~L~~~Qi~YAA~Da~~~~~l~~~L~~ 194 (198)
++|.+.... +-|..||.++.+|+.++.+
T Consensus 186 ~~gi~~~~~------------------H~Al~Da~ata~l~~~~~~ 213 (242)
T 3mxm_B 186 LYWQAPTDS------------------HTAEGDDLTLLSICQWKPQ 213 (242)
T ss_dssp HHSSCCSST------------------TSHHHHHHHHHHHHTSSHH
T ss_pred HhCCCCCCC------------------cChHHHHHHHHHHHHHHHH
Confidence 899875431 2368899999999876653
No 16
>2gui_A DNA polymerase III epsilon subunit; DNA polymerase proofreading domain, transferase; HET: DNA U5P; 1.60A {Escherichia coli} SCOP: c.55.3.5 PDB: 1j54_A* 1j53_A* 2ido_A* 2xy8_A*
Probab=97.18 E-value=0.014 Score=44.47 Aligned_cols=89 Identities=15% Similarity=0.103 Sum_probs=62.6
Q ss_pred HHHHhhcCCCeEEEEEeecchHHHHhhh---cCCc---c---CceeehHHHHHHhCCCCCCCCchHHHHHHHHcCCcCCC
Q 037014 86 SIKNFLSDPNVVFVGIEVEEIMSKLKNE---YGLC---I---KKKIDVRTLAKLHFPISCLGKPGLKVLAYQLLRLRPWK 156 (198)
Q Consensus 86 ~L~~lL~d~~i~kvG~~~~~D~~~L~~~---~gi~---~---~~~~Dl~~l~~~~l~~~~~~~~~L~~l~~~~l~~~l~K 156 (198)
.+.+++.+. +.|||+...|...|.+. +|+. + ...+|+..+++..++ .. +.+|.++++. +|.+...
T Consensus 88 ~~~~~l~~~--~lv~hn~~fD~~~L~~~~~~~g~~~p~~~~~~~~iDt~~l~~~~~p--~~-~~~L~~l~~~-~gi~~~~ 161 (194)
T 2gui_A 88 EFMDYIRGA--ELVIHNAAFDIGFMDYEFSLLKRDIPKTNTFCKVTDSLAVARKMFP--GK-RNSLDALCAR-YEIDNSK 161 (194)
T ss_dssp HHHHHHTTS--EEEETTHHHHHHHHHHHHHHTCSCCCCGGGTSEEEEHHHHHHHHST--TS-CCSHHHHHHH-TTCCCTT
T ss_pred HHHHHHCCC--eEEEEchHHhHHHHHHHHHHcCCCCccccccCceeeHHHHHHHHcC--CC-CCCHHHHHHH-cCcCCCC
Confidence 466677653 46999999999988753 4665 2 368999888876664 22 5799999986 5765432
Q ss_pred CCceeccCCCCCCCCHHHHHHHHHhHHHHHHHHHHHhccc
Q 037014 157 PKKVCMNNLESGFLDTELIKFACIDAYVSCAIGTKLLLEE 196 (198)
Q Consensus 157 ~~~~~~s~W~~~~L~~~Qi~YAA~Da~~~~~l~~~L~~~~ 196 (198)
. .-+-|..||.++.+|+.+|..+.
T Consensus 162 ~----------------~~H~Al~Da~~ta~l~~~l~~~~ 185 (194)
T 2gui_A 162 R----------------TLHGALLDAQILAEVYLAMTGGQ 185 (194)
T ss_dssp C----------------SSCCHHHHHHHHHHHHHHHTC--
T ss_pred C----------------CCCChHHHHHHHHHHHHHHHhcc
Confidence 0 11237889999999999998764
No 17
>1w0h_A 3'-5' exonuclease ERI1; nuclease domain, hydrolase; HET: AMP; 1.59A {Homo sapiens} SCOP: c.55.3.5
Probab=97.10 E-value=0.0092 Score=45.71 Aligned_cols=92 Identities=14% Similarity=0.042 Sum_probs=63.5
Q ss_pred HHHHhhcCC-----CeEEEEEeecchHH-HHhh---hcCCcc----CceeehHHHHHHhCCCCCCCCchHHHHHHHHcCC
Q 037014 86 SIKNFLSDP-----NVVFVGIEVEEIMS-KLKN---EYGLCI----KKKIDVRTLAKLHFPISCLGKPGLKVLAYQLLRL 152 (198)
Q Consensus 86 ~L~~lL~d~-----~i~kvG~~~~~D~~-~L~~---~~gi~~----~~~~Dl~~l~~~~l~~~~~~~~~L~~l~~~~l~~ 152 (198)
.+.+++.+. ....|||+...|.. .|.+ .+|+.. ...+|+..+++..++.+ ..+++|.++++. +|.
T Consensus 91 ~~~~~l~~~~~~~~~~~lv~hn~~fD~~~~L~~~~~~~~~~~p~~~~~~~dt~~l~~~~~~~~-~~~~~L~~l~~~-~gi 168 (204)
T 1w0h_A 91 KVIDWMKLKELGTKYKYSLLTDGSWDMSKFLNIQCQLSRLKYPPFAKKWINIRKSYGNFYKVP-RSQTKLTIMLEK-LGM 168 (204)
T ss_dssp HHHHHHHHTTBTTTBCEEEEESSTTTTHHHHHHHHHHHTCCCCGGGSEEEEHHHHHHHHHTCC-GGGCSHHHHHHH-TTC
T ss_pred HHHHHHHhcCCCCCCcEEEEEECcchHHHHHHHHHHHhCCCCcccccceEEHHHHHHHHhCCC-CccchHHHHHHH-cCC
Confidence 455566543 34689999999996 8864 356543 26899998887665532 235789999986 576
Q ss_pred cCCCCCceeccCCCCCCCCHHHHHHHHHhHHHHHHHHHHHhccc
Q 037014 153 RPWKPKKVCMNNLESGFLDTELIKFACIDAYVSCAIGTKLLLEE 196 (198)
Q Consensus 153 ~l~K~~~~~~s~W~~~~L~~~Qi~YAA~Da~~~~~l~~~L~~~~ 196 (198)
+.... -+-|..||.++.+|+.+|.++-
T Consensus 169 ~~~~~-----------------~H~Al~Da~~ta~l~~~l~~~~ 195 (204)
T 1w0h_A 169 DYDGR-----------------PHCGLDDSKNIARIAVRMLQDG 195 (204)
T ss_dssp CCCSC-----------------TTCHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCC-----------------ccCcHHHHHHHHHHHHHHHHCC
Confidence 54310 1236889999999999998754
No 18
>2f96_A Ribonuclease T; RNAse, RNT, RNAse T, tRNA hydrolase, SAD, PS protein structure initiative, midwest center for structural genomics; 2.09A {Pseudomonas aeruginosa} SCOP: c.55.3.5
Probab=96.75 E-value=0.02 Score=44.64 Aligned_cols=80 Identities=15% Similarity=0.053 Sum_probs=58.2
Q ss_pred CCeEEEEEeecchHHHHhhh---cCCc-----cCceeehHHHHHHhCCCCCCCCchHHHHHHHHcCCcCCCCCceeccCC
Q 037014 94 PNVVFVGIEVEEIMSKLKNE---YGLC-----IKKKIDVRTLAKLHFPISCLGKPGLKVLAYQLLRLRPWKPKKVCMNNL 165 (198)
Q Consensus 94 ~~i~kvG~~~~~D~~~L~~~---~gi~-----~~~~~Dl~~l~~~~l~~~~~~~~~L~~l~~~~l~~~l~K~~~~~~s~W 165 (198)
+..+.|||+...|...|.+. +|+. ....+|+..+++..++ +.+|..+++. +|.+....
T Consensus 125 ~~~~lV~hn~~FD~~fL~~~~~~~g~~~~p~~~~~~iDt~~l~~~~~~-----~~~L~~l~~~-~gi~~~~~-------- 190 (224)
T 2f96_A 125 KRAILVGHNSSFDLGFLNAAVARTGIKRNPFHPFSSFDTATLAGLAYG-----QTVLAKACQA-AGMEFDNR-------- 190 (224)
T ss_dssp SEEEEEETTHHHHHHHHHHHHHHHTCCCCCEEEEEEEEHHHHHHHHHS-----CCSHHHHHHH-TTCCCCTT--------
T ss_pred CCCEEEEeChhhhHHHHHHHHHHcCCCcCCccccceeeHHHHHHHHcC-----CCCHHHHHHH-cCCCcCCC--------
Confidence 35678999999999998753 5664 1357999888876654 4589999986 57654321
Q ss_pred CCCCCCHHHHHHHHHhHHHHHHHHHHHhcc
Q 037014 166 ESGFLDTELIKFACIDAYVSCAIGTKLLLE 195 (198)
Q Consensus 166 ~~~~L~~~Qi~YAA~Da~~~~~l~~~L~~~ 195 (198)
+-+-|..||.++.+|+.+|.++
T Consensus 191 --------~~H~Al~Da~~ta~l~~~l~~~ 212 (224)
T 2f96_A 191 --------EAHSARYDTEKTAELFCGIVNR 212 (224)
T ss_dssp --------SCCCHHHHHHHHHHHHHHHHHH
T ss_pred --------CCCChHHHHHHHHHHHHHHHHH
Confidence 1134789999999999988753
No 19
>1zbh_A 3'-5' exonuclease ERI1; histone mRNA 3'-END-specific recognition, structures of 3'- exonuclease and ITS RNA complex, hydrolase/RNA complex; HET: AMP; 3.00A {Homo sapiens}
Probab=96.65 E-value=0.044 Score=44.83 Aligned_cols=92 Identities=14% Similarity=0.053 Sum_probs=63.4
Q ss_pred HHHHhhcCC-----CeEEEEEeecchHH-HHhhh---cCCcc----CceeehHHHHHHhCCCCCCCCchHHHHHHHHcCC
Q 037014 86 SIKNFLSDP-----NVVFVGIEVEEIMS-KLKNE---YGLCI----KKKIDVRTLAKLHFPISCLGKPGLKVLAYQLLRL 152 (198)
Q Consensus 86 ~L~~lL~d~-----~i~kvG~~~~~D~~-~L~~~---~gi~~----~~~~Dl~~l~~~~l~~~~~~~~~L~~l~~~~l~~ 152 (198)
.+.+++.+. ..+.|||+...|.. .|.+. +|+.. ...+|+..++...++.+. ..++|.+|++. +|.
T Consensus 159 ~f~~~l~~~~~~~~~~~lVahn~~fD~~~fL~~~~~~~g~~~p~~~~~~iDt~~l~~~~~~~~~-~~~~L~~l~~~-~gi 236 (299)
T 1zbh_A 159 KVIDLMKLKELGTKYKYSLLTDGSWDMSKFLNIQCQLSRLKYPPFAKKWINIRKSYGNFYKVPR-SQTKLTIMLEK-LGM 236 (299)
T ss_dssp HHHHHHHHTTBTTTBCEEEEESSSHHHHTHHHHHHHHTTBCCCGGGSEEEEHHHHHHHHHTCCG-GGCSHHHHHHH-TTC
T ss_pred HHHHHHhhcccCCCCcEEEEEeCHHHHHHHHHHHHHHcCCCCCcccchHHHHHHHHHHHhCCCC-CCccHHHHHHH-cCC
Confidence 455666653 25689999999998 88653 56553 257999887765544331 24899999986 675
Q ss_pred cCCCCCceeccCCCCCCCCHHHHHHHHHhHHHHHHHHHHHhccc
Q 037014 153 RPWKPKKVCMNNLESGFLDTELIKFACIDAYVSCAIGTKLLLEE 196 (198)
Q Consensus 153 ~l~K~~~~~~s~W~~~~L~~~Qi~YAA~Da~~~~~l~~~L~~~~ 196 (198)
+.... -+-|..||.++.+|+.+|.++.
T Consensus 237 ~~~g~-----------------~H~Al~DA~ata~l~~~l~~~~ 263 (299)
T 1zbh_A 237 DYDGR-----------------PNCGLDDSKNIARIAVRMLQDG 263 (299)
T ss_dssp CCCSC-----------------TTCHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCC-----------------CCChHHHHHHHHHHHHHHHHhC
Confidence 54310 1336889999999999998653
No 20
>1qht_A Protein (DNA polymerase); archaea, hyperthermostable, family B polymer alpha family polymerase, transferase; 2.10A {Thermococcus SP} SCOP: c.55.3.5 e.8.1.1 PDB: 1tgo_A 2xhb_A* 2vwj_A* 2vwk_A* 1wns_A* 1wn7_A 1qqc_A* 4ahc_A* 4ail_C* 3a2f_A* 2jgu_A* 1d5a_A
Probab=96.16 E-value=0.05 Score=50.36 Aligned_cols=150 Identities=13% Similarity=0.145 Sum_probs=89.7
Q ss_pred CeEEEEeeeecCCC-CCCCCCceeEEEeeeCCeEEEEEcccc---------C--cccHHHHHhh--cCCCeEEEEEeec-
Q 037014 40 ILIVGLNCKWKPHP-IPSLSGKIATLQLCVDTKCLILQLLYM---------D--CIPLSIKNFL--SDPNVVFVGIEVE- 104 (198)
Q Consensus 40 ~~~vg~D~Ew~~~~-~~~~~~~~~liQla~~~~~~i~~l~~~---------~--~~~~~L~~lL--~d~~i~kvG~~~~- 104 (198)
..++.||+|..... ..+...++..|.++..+..-++..... + .+...+.+++ .||+| .||||+.
T Consensus 135 l~ilsfDIEt~~~~~p~~~~d~Ii~Is~~~~~~~~~~t~~~i~~~~v~~~~~E~~LL~~f~~~i~~~dPDi-ivGyN~~~ 213 (775)
T 1qht_A 135 LTMLAFAIATLYHEGEEFGTGPILMISYADGSEARVITWKKIDLPYVDVVSTEKEMIKRFLRVVREKDPDV-LITYNGDN 213 (775)
T ss_dssp CCEEEEEEEECCCTTCCTTCSCEEEEEEECSSCEEEEESSCCCCSSEEECSCHHHHHHHHHHHHHHHCCSE-EEESSTTT
T ss_pred cEEEEEEEEEcCCCCCCCCCCcEEEEEEEecCCCeeEeeccccccceEEcCCHHHHHHHHHHHHHhcCCCE-EEEeCCCC
Confidence 38999999998632 122345555555444444333222111 1 1223444444 46775 7999885
Q ss_pred chHHHHhhh---cCCcc------------------------CceeehHHHHHHhCCCCCCCCchHHHHHHHHcCCcCCCC
Q 037014 105 EIMSKLKNE---YGLCI------------------------KKKIDVRTLAKLHFPISCLGKPGLKVLAYQLLRLRPWKP 157 (198)
Q Consensus 105 ~D~~~L~~~---~gi~~------------------------~~~~Dl~~l~~~~l~~~~~~~~~L~~l~~~~l~~~l~K~ 157 (198)
.|+-.|.++ +|+.. .-.+|+-.+++..+. +.+.+|+++++.+||..-..-
T Consensus 214 FDlpyL~~Ra~~~gi~~~lgR~~~~~~~~~~g~~~~~~i~Gr~~lDl~~~~k~~~~---l~sysL~~Va~~~Lg~~K~dv 290 (775)
T 1qht_A 214 FDFAYLKKRCEELGIKFTLGRDGSEPKIQRMGDRFAVEVKGRIHFDLYPVIRRTIN---LPTYTLEAVYEAVFGKPKEKV 290 (775)
T ss_dssp THHHHHHHHHHHTTCCCCCSTTSCCCEEEEETTEEEEECTTSEEEEHHHHHHHHSC---CSCCCHHHHHHHHHCCCCCCC
T ss_pred ccHHHHHHHHHHcCCCcccccCCCcCceeecCceeeEEecCeEEEEHHHHHHHhcC---cCcCCHHHHHHHHhCCCCCcc
Confidence 588877643 44432 235788888776543 347899999999999742211
Q ss_pred C-ceeccCCCCCCCCHHHHHHHHHhHHHHHHHHHHHh
Q 037014 158 K-KVCMNNLESGFLDTELIKFACIDAYVSCAIGTKLL 193 (198)
Q Consensus 158 ~-~~~~s~W~~~~L~~~Qi~YAA~Da~~~~~l~~~L~ 193 (198)
. +.-..-|...+--..-+.|...||...+.|+.++.
T Consensus 291 ~~~~i~~~~~~~~~l~~l~~Y~~~Da~lt~~L~~~~~ 327 (775)
T 1qht_A 291 YAEEIAQAWESGEGLERVARYSMEDAKVTYELGREFF 327 (775)
T ss_dssp CHHHHHHHHTTTCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHhhh
Confidence 0 11112355444124556999999999999987764
No 21
>1zbu_A ERI-1 homolog, 3'-5' exonuclease ERI1; hydrolase; HET: AMP; 3.00A {Homo sapiens}
Probab=95.89 E-value=0.13 Score=43.10 Aligned_cols=92 Identities=14% Similarity=0.052 Sum_probs=63.3
Q ss_pred HHHHhhcCC-----CeEEEEEeecchHH-HHhhh---cCCcc----CceeehHHHHHHhCCCCCCCCchHHHHHHHHcCC
Q 037014 86 SIKNFLSDP-----NVVFVGIEVEEIMS-KLKNE---YGLCI----KKKIDVRTLAKLHFPISCLGKPGLKVLAYQLLRL 152 (198)
Q Consensus 86 ~L~~lL~d~-----~i~kvG~~~~~D~~-~L~~~---~gi~~----~~~~Dl~~l~~~~l~~~~~~~~~L~~l~~~~l~~ 152 (198)
.+.+|+.+. ..+.|||+...|+. .|.+. +|+.. ..++|+..++...++.+. ..++|..|++. +|.
T Consensus 209 ~f~~~l~~~~~~~~~~~lVaHNa~FD~~~fL~~~~~~~g~~~p~~~~~~iDt~~l~~~~~~~~~-~~~~L~~l~~~-~gi 286 (349)
T 1zbu_A 209 KVIDLMKLKELGTKYKYSLLTDGSWDMSKFLNIQCQLSRLKYPPFAKKWINIRKSYGNFYKVPR-SQTKLTIMLEK-LGM 286 (349)
T ss_dssp HHHHHHHHTTBTTTBCEEEEESSSHHHHTHHHHHHHHTTBCCCGGGSEEEEHHHHHHHHHTCCG-GGGSHHHHHHH-TTC
T ss_pred HHHHHHhcccccCCCcEEEEECcHhhHHHHHHHHHHHhCCCCccccchHHHHHHHHHHHhcCCC-CCCCHHHHHHH-cCC
Confidence 455567553 24689999999998 88653 56543 257999888765544331 24899999986 675
Q ss_pred cCCCCCceeccCCCCCCCCHHHHHHHHHhHHHHHHHHHHHhccc
Q 037014 153 RPWKPKKVCMNNLESGFLDTELIKFACIDAYVSCAIGTKLLLEE 196 (198)
Q Consensus 153 ~l~K~~~~~~s~W~~~~L~~~Qi~YAA~Da~~~~~l~~~L~~~~ 196 (198)
+.... -+-|..||.++.+|+.+|+++.
T Consensus 287 ~~~g~-----------------~HrAl~DA~ata~ll~~ll~~~ 313 (349)
T 1zbu_A 287 DYDGR-----------------PHCGLDDSKNIARIAVRMLQDG 313 (349)
T ss_dssp CCCSC-----------------TTCHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCC-----------------CCCHHHHHHHHHHHHHHHHHhc
Confidence 54320 1336889999999999988653
No 22
>1y97_A Three prime repair exonuclease 2; TREX2, hydrolase; 2.50A {Homo sapiens} SCOP: c.55.3.5
Probab=95.78 E-value=0.027 Score=44.19 Aligned_cols=92 Identities=15% Similarity=-0.003 Sum_probs=63.4
Q ss_pred HHHHHhhcCC--CeEEEEEee-cchHHHHhh---hcCCcc---CceeehHHHHHHhCC-------CCCCCCchHHHHHHH
Q 037014 85 LSIKNFLSDP--NVVFVGIEV-EEIMSKLKN---EYGLCI---KKKIDVRTLAKLHFP-------ISCLGKPGLKVLAYQ 148 (198)
Q Consensus 85 ~~L~~lL~d~--~i~kvG~~~-~~D~~~L~~---~~gi~~---~~~~Dl~~l~~~~l~-------~~~~~~~~L~~l~~~ 148 (198)
+.|.+||.+- ..+.||||. ..|...|.+ .+|+.. ...+|+..+++.... .|...+++|.+++++
T Consensus 101 ~~l~~fl~~~~~~~~lVahN~~~FD~~fL~~~~~~~g~~~~~~~~~iDt~~l~~~~~~~~~p~~~~p~~~~~~L~~l~~~ 180 (238)
T 1y97_A 101 RTLQAFLSRQAGPICLVAHNGFDYDFPLLCAELRRLGARLPRDTVCLDTLPALRGLDRAHSHGTRARGRQGYSLGSLFHR 180 (238)
T ss_dssp HHHHHHHTTSCSSEEEEETTTTTTHHHHHHHHHHHHTCCCCTTCEEEEHHHHHHHHHHHC----------CCSHHHHHHH
T ss_pred HHHHHHHHhCCCCCEEEecCchhhhHHHHHHHHHHcCCCCCCCCEEEEHHHHHHHHHhccCccccCCCCCCCCHHHHHHH
Confidence 4577888752 267899999 999999875 356654 247998877765541 023357899999998
Q ss_pred HcCCcCCCCCceeccCCCCCCCCHHHHHHHHHhHHHHHHHHHHHhc
Q 037014 149 LLRLRPWKPKKVCMNNLESGFLDTELIKFACIDAYVSCAIGTKLLL 194 (198)
Q Consensus 149 ~l~~~l~K~~~~~~s~W~~~~L~~~Qi~YAA~Da~~~~~l~~~L~~ 194 (198)
++|.+... -+-|..||.++.+++.++.+
T Consensus 181 ~~gi~~~~------------------~H~Al~Da~~ta~l~~~l~~ 208 (238)
T 1y97_A 181 YFRAEPSA------------------AHSAEGDVHTLLLIFLHRAA 208 (238)
T ss_dssp HHSSCCC---------------------CHHHHHHHHHHHHHHTHH
T ss_pred HhCCCCcc------------------CccHHHHHHHHHHHHHHHHH
Confidence 77865321 35688999999999988764
No 23
>2qxf_A Exodeoxyribonuclease I; alpha-beta domain, DNAQ superfamily, SH3-like domain, produc structure, DNA damage, DNA repair, exonuclease; HET: TMP; 1.50A {Escherichia coli} SCOP: c.55.3.5 PDB: 1fxx_A* 3c94_A 3c95_A 3hl8_A* 3hp9_A*
Probab=95.66 E-value=0.14 Score=44.82 Aligned_cols=91 Identities=14% Similarity=0.101 Sum_probs=59.5
Q ss_pred HHHHhhcCCCeEEEEEe-ecchHHHHhhh---cCCcc--------CceeehHHHHHHhCC-------CC----CCCCchH
Q 037014 86 SIKNFLSDPNVVFVGIE-VEEIMSKLKNE---YGLCI--------KKKIDVRTLAKLHFP-------IS----CLGKPGL 142 (198)
Q Consensus 86 ~L~~lL~d~~i~kvG~~-~~~D~~~L~~~---~gi~~--------~~~~Dl~~l~~~~l~-------~~----~~~~~~L 142 (198)
.+.+++..++-+.|||| +..|...|.+. +|+.+ ...+|+..+++.... .| +..+.+|
T Consensus 87 ~f~~~l~~~~~~lVaHNs~~FD~~fL~~~~~r~g~~~~~~~w~~~~~~iDtl~l~r~~~~~~~~~~~wP~~~~~~~s~kL 166 (482)
T 2qxf_A 87 RIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRL 166 (482)
T ss_dssp HHHHHHTSTTEEEEESSTTTTHHHHHHHHHHHTTSCSSGGGTGGGCEEEEHHHHHHHHHHHCCTTSCCCBCTTSSBCCCH
T ss_pred HHHHHHcCCCCEEEEECCHHHHHHHHHHHHHHhCCCccccccccCCceeeHHHHHHHHHHhCcccccCcccccCCCCCCH
Confidence 35556775677899998 99999988653 34431 456788877664321 01 2347789
Q ss_pred HHHHHHHcCCcCCCCCceeccCCCCCCCCHHHHHHHHHhHHHHHHHHHHHhcc
Q 037014 143 KVLAYQLLRLRPWKPKKVCMNNLESGFLDTELIKFACIDAYVSCAIGTKLLLE 195 (198)
Q Consensus 143 ~~l~~~~l~~~l~K~~~~~~s~W~~~~L~~~Qi~YAA~Da~~~~~l~~~L~~~ 195 (198)
..+++. +|.+... -+-|..||+++..|+.++.+.
T Consensus 167 ~~L~~~-~Gi~~~~------------------aHrAL~DA~aTa~l~~~l~~~ 200 (482)
T 2qxf_A 167 EHLTKA-NGIEHSN------------------AHDAMADVYATIAMAKLVKTR 200 (482)
T ss_dssp HHHHHH-TTCCCC---------------------CTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-cCCCCCC------------------CCCHHHHHHHHHHHHHHHHHh
Confidence 999875 5754321 123578999999998887643
No 24
>3u3y_B Three prime repair exonuclease 1; RNAse H fold, 3' exonuclease, homodimer, hydrolase-DNA compl; HET: BU1; 2.28A {Mus musculus} PDB: 3u6f_B*
Probab=94.68 E-value=0.095 Score=43.33 Aligned_cols=92 Identities=13% Similarity=-0.025 Sum_probs=62.6
Q ss_pred HHHHHhhcC--CCeEEEEEe-ecchHHHHhhh---cCCcc--C--ceeehHHHHHHhC--CCCC----CCCchHHHHHHH
Q 037014 85 LSIKNFLSD--PNVVFVGIE-VEEIMSKLKNE---YGLCI--K--KKIDVRTLAKLHF--PISC----LGKPGLKVLAYQ 148 (198)
Q Consensus 85 ~~L~~lL~d--~~i~kvG~~-~~~D~~~L~~~---~gi~~--~--~~~Dl~~l~~~~l--~~~~----~~~~~L~~l~~~ 148 (198)
+.|.+|+.+ +..+.|||| +..|...|.+. +|+.. . .++|...+++.+. ..|. ..+++|.+++++
T Consensus 106 ~~l~~fL~~~~~~~vLVAHNga~FD~~FL~~el~r~Gl~~~~~~~~~iDTL~l~r~L~r~~~P~~~~~~~~~~L~~L~~~ 185 (314)
T 3u3y_B 106 ILLRAFLQRQPQPCCLVAHNGDRYDFPLLQTELARLSTPSPLDGTFCVDSIAALKALEQASSPSGNGSRKSYSLGSIYTR 185 (314)
T ss_dssp HHHHHHHHTSCSSEEEEETTTTTTHHHHHHHHHHTSSSCCTTTTCEEEEHHHHHHHHHTTC-------CCCCSHHHHHHH
T ss_pred HHHHHHHhcCCCCcEEEEeCcHHHHHHHHHHHHHHcCCCCCCCCceEEeHHHHHHHHHHHhCccccccCCCCCHHHHHHH
Confidence 346677775 337889999 99999999753 56654 2 3688877554211 0121 257899999999
Q ss_pred HcCCcCCCCCceeccCCCCCCCCHHHHHHHHHhHHHHHHHHHHHhc
Q 037014 149 LLRLRPWKPKKVCMNNLESGFLDTELIKFACIDAYVSCAIGTKLLL 194 (198)
Q Consensus 149 ~l~~~l~K~~~~~~s~W~~~~L~~~Qi~YAA~Da~~~~~l~~~L~~ 194 (198)
++|.+.... +-|..||.++.+|+.++.+
T Consensus 186 l~gi~~~~a------------------HrAl~DA~ata~lf~~l~~ 213 (314)
T 3u3y_B 186 LYWQAPTDS------------------HTAEGHVLTLLSICQWKPQ 213 (314)
T ss_dssp HHSSCCSCS------------------SSHHHHHHHHHHHHHSSHH
T ss_pred hcCCCCCCC------------------CCHHHHHHHHHHHHHHHHH
Confidence 889775431 1267899999999987654
No 25
>1noy_A Protein (DNA polymerase (E.C.2.7.7.7)); exonuclease, DNA-binding, complex (nucleotidyltransferase/DNA); HET: DNA; 2.20A {Enterobacteria phage T4} SCOP: c.55.3.5 PDB: 1noz_A*
Probab=94.12 E-value=0.49 Score=39.97 Aligned_cols=176 Identities=16% Similarity=0.163 Sum_probs=101.8
Q ss_pred cCeEEEEEEcCCHHHHHHHHHHHHhhcc------------------C-------CCeEEEEeeeecCC-CCCCC--CCce
Q 037014 10 CGKIIETTVTSTTSVAENWLLKIRSLHS------------------A-------QILIVGLNCKWKPH-PIPSL--SGKI 61 (198)
Q Consensus 10 ~~~~i~~~v~~~~~~~~~~i~~~~~~~~------------------~-------~~~~vg~D~Ew~~~-~~~~~--~~~~ 61 (198)
.|+.+.....+++.++.++.+.+..... + ...++.||+|.... |..+. .+++
T Consensus 51 ~g~~~~~i~~~~~~~~~~~~~~l~~~~~~v~e~~rf~~~~~~d~~~g~~~~~~p~l~vlsfDIEt~~~~fP~~~~~~d~I 130 (388)
T 1noy_A 51 YGKNCAPQKFPSMKDARDWMKRMEDIGLEALGMNDFKLAYISDTYGSEIVYDRKFVRVANCDIEVTGDKFPDPMKAEYEI 130 (388)
T ss_dssp TTCCCCCEECSSHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHTCSCCCCCGGGCCEEEEEEEECCSSCCCTTTCCSCE
T ss_pred CCCEEEEEeCCCHHHHHHHHHHHHhcCceeccCcHHHHHHhhhcCCcceecCCCCeEEEEEEEEeCCCCCCCCCCCCCeE
Confidence 4555555566777777777766544210 1 14799999999862 22222 3477
Q ss_pred eEEEeeeCCe-E-EEEEccc-------------------------------------c---CcccHHHHHhh--cCCCeE
Q 037014 62 ATLQLCVDTK-C-LILQLLY-------------------------------------M---DCIPLSIKNFL--SDPNVV 97 (198)
Q Consensus 62 ~liQla~~~~-~-~i~~l~~-------------------------------------~---~~~~~~L~~lL--~d~~i~ 97 (198)
..|+++.... . +++.+.+ . ..+...+.+++ .||+|
T Consensus 131 i~Is~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~v~v~~~~~E~~LL~~f~~~i~~~dPDi- 209 (388)
T 1noy_A 131 DAITHYDSIDDRFYVFDLLNSMYGSVSKWDAKLAAKLDCEGGDEVPQEILDRVIYMPFDNERDMLMEYINLWEQKRPAI- 209 (388)
T ss_dssp EEEEEEETTTTEEEEEEECCCSSCCCCCCCHHHHHSCGGGTCCCCCHHHHTTEEEEEESCHHHHHHHHHHHHHHSCCSE-
T ss_pred EEEEEEEecCCeEEEEEEeeccCCCCCccccccccccccccccccccccCCCeEEEEcCCHHHHHHHHHHHHHHhCCcE-
Confidence 7777775432 2 2332110 0 01223344444 57876
Q ss_pred EEEEeec-chHHHHhh---h-cCC---------------------------ccCc--eeehHHHHHHh-CCCCCCCCchH
Q 037014 98 FVGIEVE-EIMSKLKN---E-YGL---------------------------CIKK--KIDVRTLAKLH-FPISCLGKPGL 142 (198)
Q Consensus 98 kvG~~~~-~D~~~L~~---~-~gi---------------------------~~~~--~~Dl~~l~~~~-l~~~~~~~~~L 142 (198)
.+|||+. .|+-.|.+ . +|+ .+.| .+|+-.+++.. +. ...+.+|
T Consensus 210 i~GyN~~~FDlpyL~~Ra~~~lg~~l~~~~s~~~r~~~~~~~~~~g~~~~~~i~GR~~lD~~~~~k~~~~~--~l~sysL 287 (388)
T 1noy_A 210 FTGWNIEGFDVPYIMNRVKMILGERSMKRFSPIGRVKSKLLQNMYGSKEIYSIDGVSILDYLDLYKKFAFT--NLPSFSL 287 (388)
T ss_dssp EECSSTTTTHHHHHHHHHHHHHHHHHHGGGSTTSCEEEEECCGGGCSCEEEEETTSEECCHHHHHHHHTCC--CCSCCSH
T ss_pred EEecCCCCccHHHHHHHHHHHcCCccccccCcccccccccChhhhCCcceEEEcCeEEeEHHHHHhhcCcC--cccCCCH
Confidence 6899984 58866553 1 331 0111 57887777652 32 1458899
Q ss_pred HHHHHHHcCCc-CCCCCceeccC-CCCCCCCHHHHHHHHHhHHHHHHHHHHH
Q 037014 143 KVLAYQLLRLR-PWKPKKVCMNN-LESGFLDTELIKFACIDAYVSCAIGTKL 192 (198)
Q Consensus 143 ~~l~~~~l~~~-l~K~~~~~~s~-W~~~~L~~~Qi~YAA~Da~~~~~l~~~L 192 (198)
+++++.+||.. .+-++.+ .. |. .-...-++|+-.||...++|+.++
T Consensus 288 ~~Va~~~Lg~~K~d~~~~i--~~~~~--~~~~~l~~Y~~~D~~l~~~L~~kl 335 (388)
T 1noy_A 288 ESVAQHETKKGKLPYDGPI--NKLRE--TNHQRYISYNIIDVESVQAIDKIR 335 (388)
T ss_dssp HHHHHHHHSCCCCCCSSCG--GGHHH--HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCcHHHH--HHHHH--hCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999864 2211222 22 33 111234599999999999999985
No 26
>2gv9_A DNA polymerase; polymerase alpha fold, transferase; HET: DNA; 2.68A {Human herpesvirus 1} PDB: 1dml_B*
Probab=93.62 E-value=0.38 Score=46.58 Aligned_cols=97 Identities=13% Similarity=0.096 Sum_probs=57.9
Q ss_pred cCCCeEEEEEeec-chHHHHhhh----cCCccC--------------------------------ceeehHHHHHHhCCC
Q 037014 92 SDPNVVFVGIEVE-EIMSKLKNE----YGLCIK--------------------------------KKIDVRTLAKLHFPI 134 (198)
Q Consensus 92 ~d~~i~kvG~~~~-~D~~~L~~~----~gi~~~--------------------------------~~~Dl~~l~~~~l~~ 134 (198)
.||+| .+|||+. .|+-.|.++ +|+.+. -.+|+-.++...+
T Consensus 415 ~DPDI-IvGyNi~~FDlpyL~~Ra~~~~gl~l~~~GRl~r~~~~k~~~~~~~~f~~~~~~~i~GRv~lDl~~~~~~~~-- 491 (1193)
T 2gv9_A 415 YGPEF-VTGYNIINFDWPFLLAKLTDIYKVPLDGYGRMNGRGVFRVWDIGQSHFQKRSKIKVNGMVNIDMYGIITDKI-- 491 (1193)
T ss_dssp HCCSE-EEESSTTTTHHHHHHHHHHHTTCCCCTTTSSBSSSCCEEECC----------CEEETTBEEEEHHHHHTTTC--
T ss_pred cCCCE-EEEcCCcCccHHHHHHHHHHHcCCChHHhcccccCCcceeeccccccccccceEEEcCeEeehHHHHHHHHh--
Confidence 47776 6999985 588877643 343321 1357655554333
Q ss_pred CCCCCchHHHHHHHHcCCcCCCCCceeccC-CCCCCCC-HHHHHHHHHhHHHHHHHHHHH
Q 037014 135 SCLGKPGLKVLAYQLLRLRPWKPKKVCMNN-LESGFLD-TELIKFACIDAYVSCAIGTKL 192 (198)
Q Consensus 135 ~~~~~~~L~~l~~~~l~~~l~K~~~~~~s~-W~~~~L~-~~Qi~YAA~Da~~~~~l~~~L 192 (198)
.+.+.+|+++++.+||..-..-.--.... |...+-. ..-..|.-.||+..++|+.++
T Consensus 492 -kl~sYsL~~Va~~~Lg~~K~dv~~~eI~~~~~~~~~~r~~L~~Ycl~Da~lt~~L~~kl 550 (1193)
T 2gv9_A 492 -KLSSYKLNAVAEAVLKDKKKDLSYRDIPAYYATGPAQRGVIGEYCIQDSLLVGQLFFKF 550 (1193)
T ss_dssp -CCSCCCHHHHHHHTSCCCCCCCCTTTHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -ccCCCCHHHHHHHHhccCCCCCCHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 24588999999999995421100001111 2222111 122499999999999999887
No 27
>2xri_A ERI1 exoribonuclease 3; hydrolase, metal binding; 2.15A {Homo sapiens}
Probab=93.39 E-value=1.1 Score=34.74 Aligned_cols=89 Identities=16% Similarity=0.122 Sum_probs=54.6
Q ss_pred HHHHhhcCCCeEEEEEee--------cchHHH-Hhh---hcCCcc----CceeehHHHHHHhCCCCCCCCchHHHHHHHH
Q 037014 86 SIKNFLSDPNVVFVGIEV--------EEIMSK-LKN---EYGLCI----KKKIDVRTLAKLHFPISCLGKPGLKVLAYQL 149 (198)
Q Consensus 86 ~L~~lL~d~~i~kvG~~~--------~~D~~~-L~~---~~gi~~----~~~~Dl~~l~~~~l~~~~~~~~~L~~l~~~~ 149 (198)
.+.+++.+.. .|||+. ..|+.. |.+ .+|+.. ...+|++.......+. ....+|..|++ .
T Consensus 110 ~f~~~l~~~~--lv~hn~~~~~~t~g~fD~~fll~~~~~~~g~~~p~~~~~~iD~~~~~~~~~~~--~p~~~L~~l~~-~ 184 (224)
T 2xri_A 110 RVDEWMAKEG--LLDPNVKSIFVTCGDWDLKVMLPGQCQYLGLPVADYFKQWINLKKAYSFAMGC--WPKNGLLDMNK-G 184 (224)
T ss_dssp HHHHHHHHTT--TTSTTSCEEEEESSSHHHHTHHHHHHHHHTCCCCGGGSCEEEHHHHHHHHHTS--CCTTTHHHHHH-H
T ss_pred HHHHHHhhcc--cccCCCceEEEEeChhhHHHHHHHHHHHhCCCCcccccceEeHHHHHHHHhcc--CCCCCHHHHHH-H
Confidence 4555666542 245555 899985 633 456653 3678976554322221 12579999998 4
Q ss_pred cCCcCCCCCceeccCCCCCCCCHHHHHHHHHhHHHHHHHHHHHhccc
Q 037014 150 LRLRPWKPKKVCMNNLESGFLDTELIKFACIDAYVSCAIGTKLLLEE 196 (198)
Q Consensus 150 l~~~l~K~~~~~~s~W~~~~L~~~Qi~YAA~Da~~~~~l~~~L~~~~ 196 (198)
+|.+... +-+-|..||.+..+|+.+|.++.
T Consensus 185 ~gi~~~~-----------------~~H~Al~DA~~ta~l~~~l~~~g 214 (224)
T 2xri_A 185 LSLQHIG-----------------RPHSGIDDCKNIANIMKTLAYRG 214 (224)
T ss_dssp TTCCCCS-----------------CTTCHHHHHHHHHHHHHHHHHTT
T ss_pred cCCCCCC-----------------CCcChHHHHHHHHHHHHHHHHcC
Confidence 5654321 11337889999999999998653
No 28
>3iay_A DNA polymerase delta catalytic subunit; protein-DNA complex, DNA replication, DNA-BI DNA-directed DNA polymerase, exonuclease, hydrolase; HET: DNA DOC DCP; 2.00A {Saccharomyces cerevisiae}
Probab=93.03 E-value=0.8 Score=43.15 Aligned_cols=104 Identities=19% Similarity=0.276 Sum_probs=63.4
Q ss_pred HHHHHhh--cCCCeEEEEEeec-chHHHHhhh---cCCc----------------------------------cC--cee
Q 037014 85 LSIKNFL--SDPNVVFVGIEVE-EIMSKLKNE---YGLC----------------------------------IK--KKI 122 (198)
Q Consensus 85 ~~L~~lL--~d~~i~kvG~~~~-~D~~~L~~~---~gi~----------------------------------~~--~~~ 122 (198)
..+.+++ .||+| .+|||+. .|+-.|.++ +|+. +. -.+
T Consensus 318 ~~F~~~i~~~DPDI-IvGyNi~~FDlpyL~~Ra~~lgi~~~~~lGR~~~~~~~~~~~~~~~~~~g~~~~~~~~i~GR~~l 396 (919)
T 3iay_A 318 SNWRNFIIKVDPDV-IIGYNTTNFDIPYLLNRAKALKVNDFPYFGRLKTVKQEIKESVFSSKAYGTRETKNVNIDGRLQL 396 (919)
T ss_dssp HHHHHHHHHHCCSE-EEESSTTTTHHHHHHHHHHHTTCTTCSCCSSBTTCCCCBCCEEEEETTTEEEEECCBCCTTCEEE
T ss_pred HHHHHHHHHhCCCE-EEecCCccCCHHHHHHHHHHcCCCchhhhccccCccccccccccccccccccccceeEEcCeEEE
Confidence 4444555 57887 6799995 598877632 3322 11 246
Q ss_pred ehHHHHHHhCCCCCCCCchHHHHHHHHcCCcCCCCCceeccCC-CCCCCCH-HHHHHHHHhHHHHHHHHHHH
Q 037014 123 DVRTLAKLHFPISCLGKPGLKVLAYQLLRLRPWKPKKVCMNNL-ESGFLDT-ELIKFACIDAYVSCAIGTKL 192 (198)
Q Consensus 123 Dl~~l~~~~l~~~~~~~~~L~~l~~~~l~~~l~K~~~~~~s~W-~~~~L~~-~Qi~YAA~Da~~~~~l~~~L 192 (198)
|+-.+++..+. +.+.+|.++++.+||..-..-..-...+| ...+-+. .-+.|.-.||+..++|+.++
T Consensus 397 Dl~~~~k~~~~---l~sysL~~Va~~~Lg~~K~dv~~~~I~~l~~~~~~~~~~L~~Y~~~Da~l~~~L~~kl 465 (919)
T 3iay_A 397 DLLQFIQREYK---LRSYTLNAVSAHFLGEQKEDVHYSIISDLQNGDSETRRRLAVYCLKDAYLPLRLMEKL 465 (919)
T ss_dssp EHHHHHHHHCC---CSCCCHHHHHHHHHCCC------CCHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EhHHHHHhhcC---CCCCCHHHHHHHhcccCCCCCCHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 88777765443 45899999999999954221000012222 2211112 23499999999999999987
No 29
>1s5j_A DNA polymerase I; replication, disulfide bonds, transferase; HET: DNA; 2.40A {Sulfolobus solfataricus} SCOP: c.55.3.5 e.8.1.1
Probab=91.86 E-value=2.1 Score=39.93 Aligned_cols=99 Identities=19% Similarity=0.184 Sum_probs=61.7
Q ss_pred ccHHHHHhhcCCCeEEEEEeec-chHHHHhh---hcCCc-------c----------CceeehHHHHH------HhCCCC
Q 037014 83 IPLSIKNFLSDPNVVFVGIEVE-EIMSKLKN---EYGLC-------I----------KKKIDVRTLAK------LHFPIS 135 (198)
Q Consensus 83 ~~~~L~~lL~d~~i~kvG~~~~-~D~~~L~~---~~gi~-------~----------~~~~Dl~~l~~------~~l~~~ 135 (198)
+...+.+++.++. +.+|||+. .|+-.|.+ .+|+. + .-.+|+-..+. +.++.
T Consensus 260 LL~~f~~~i~~~d-iivgyN~~~FDlPyL~~Ra~~lgi~~~~~p~~~~gr~~~~i~gr~~~Dl~~~~~~~~~~~y~f~~- 337 (847)
T 1s5j_A 260 LLGRFFDILLEYP-IVLTFNGDDFDLPYIYFRALKLGYFPEEIPIDVAGKDEAKYLAGLHIDLYKFFFNKAVRNYAFEG- 337 (847)
T ss_dssp HHHHHHHHHTTCS-EEEESSTTTTHHHHHHHHHHTTTCCGGGCSEECCSTTCCEETTSEEEEHHHHHTSHHHHHHTSTT-
T ss_pred HHHHHHHHhccCC-EEEEeCCCCchHHHHHHHHHHcCCCcccCCeeecCCCceEeccEEEeehHHHHhhhhhhhhcccc-
Confidence 3456777778876 68999885 59988864 34542 1 11356655432 11221
Q ss_pred CCCCchHHHHHHHHcCCcCCCCCceeccCCCCCCCCHHH-HHHHHHhHHHHHHHH
Q 037014 136 CLGKPGLKVLAYQLLRLRPWKPKKVCMNNLESGFLDTEL-IKFACIDAYVSCAIG 189 (198)
Q Consensus 136 ~~~~~~L~~l~~~~l~~~l~K~~~~~~s~W~~~~L~~~Q-i~YAA~Da~~~~~l~ 189 (198)
...+.+|+++++.+||.. |. .+ .+.|. ...... ++|.-.||...+.|+
T Consensus 338 kl~sysL~~Va~~~Lg~~--K~-dv-~~~i~--~~~~~~l~~Ycl~Da~lt~~L~ 386 (847)
T 1s5j_A 338 KYNEYNLDAVAKALLGTS--KV-KV-DTLIS--FLDVEKLIEYNFRDAEITLQLT 386 (847)
T ss_dssp CCSSCSHHHHHHHHHCCC--CC----SSCTT--TCCHHHHHHHHHHHHHHHHHTT
T ss_pred ccccccHHHHHHHHhCCC--Cc-ch-hHhhh--hccHHHHHHHHHHHHHHHHHHH
Confidence 134789999999999964 11 11 13333 234444 599999999999985
No 30
>3ikm_A DNA polymerase subunit gamma-1; human mitochondrial DNA polymerase, disease mutation, DNA replication, DNA-binding, DNA-directed DNA polymerase; HET: DNA; 3.24A {Homo sapiens}
Probab=90.68 E-value=0.078 Score=50.34 Aligned_cols=93 Identities=12% Similarity=0.110 Sum_probs=59.7
Q ss_pred eEEEEEeecchHHHHhhhcCCccCc--eeehHHHHHHhCCC---------------------------------------
Q 037014 96 VVFVGIEVEEIMSKLKNEYGLCIKK--KIDVRTLAKLHFPI--------------------------------------- 134 (198)
Q Consensus 96 i~kvG~~~~~D~~~L~~~~gi~~~~--~~Dl~~l~~~~l~~--------------------------------------- 134 (198)
-+.||||+.+|-.++.++|.++-.+ ++|+--+..-+.|.
T Consensus 195 rlIVGHNVsyDRARI~EeY~l~~sk~rFlDTMSLHvavsG~~s~QR~~w~~~kk~k~~~~~e~~~~~~~~~~~~~~p~~~ 274 (1172)
T 3ikm_A 195 QLVVGHNVSFDRAHIREQYLIQGSRMRFLDTMSMHMAISGLSSFQRSLWIAAKQGKHKVQPPTKQGQKSQRKARRGPAIS 274 (1172)
T ss_dssp CCCBCBCSSSSTTGGGTSSCSSCCCCCCCBTTHHHHHHSCCCHHHHHHHHHHHHC-------------------------
T ss_pred cEEEeCCcchhHHHHHHHHhcccCCceeeechhhhhhccccchhhHHHHHHhhhhcccchhhHHHHhhhccccccCcccc
Confidence 4579999999999998999887543 35543221111110
Q ss_pred --CCC---CCc--hHHHHHHHHcCC-cCCCCCceeccCCCCCCCCHHH--------HHHHHHhHHHHHHHHHHHh
Q 037014 135 --SCL---GKP--GLKVLAYQLLRL-RPWKPKKVCMNNLESGFLDTEL--------IKFACIDAYVSCAIGTKLL 193 (198)
Q Consensus 135 --~~~---~~~--~L~~l~~~~l~~-~l~K~~~~~~s~W~~~~L~~~Q--------i~YAA~Da~~~~~l~~~L~ 193 (198)
+.+ +.- ||.++++-++|. +++|..+ ...... +.++ +.|+|.|+.+.+++|.++.
T Consensus 275 ~~~W~~~sS~N~~SL~dV~~lhcg~~~ldK~~R---d~Fv~~--~~~dI~~~fq~Lm~YCA~DV~aTh~V~~kl~ 344 (1172)
T 3ikm_A 275 SWDWLDISSVNSNSLAEVHRLYVGGPPLEKEPR---ELFVKG--TMKDIRENFQDLMQYCAQDVWATHEVFQQQL 344 (1172)
T ss_dssp -CCCCCCCCTTSHHHHHHHTCSSCSCS--SCSS---SSTTTT--CCSSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcccccCCCcCCHHHHHHHhCCCcccChhhH---hhhhcC--CHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 011 123 899999999996 8888633 222222 2233 3999999999999999986
No 31
>3qex_A DNA polymerase, GP43; difluorotoluene nucleoside; HET: DNA DOC DGT; 1.73A {Enterobacteria phage RB69} PDB: 3qei_A* 3qer_A* 3qes_A* 3qet_A* 3qep_A* 3qew_A* 3qev_A* 3s9h_A* 3sq0_A* 4dtn_A* 4dto_A* 4dtp_A* 4dtr_A* 4dts_A* 4dtu_A* 4dtx_A* 4e3s_A* 4fjm_A* 4fjl_A* 3spz_A* ...
Probab=89.83 E-value=2.3 Score=39.98 Aligned_cols=180 Identities=16% Similarity=0.200 Sum_probs=105.7
Q ss_pred EcCeEEEEEEcCCHHHHHHHHHHHHhhcc-------------------------CCCeEEEEeeeecCC--CCCC--CCC
Q 037014 9 FCGKIIETTVTSTTSVAENWLLKIRSLHS-------------------------AQILIVGLNCKWKPH--PIPS--LSG 59 (198)
Q Consensus 9 f~~~~i~~~v~~~~~~~~~~i~~~~~~~~-------------------------~~~~~vg~D~Ew~~~--~~~~--~~~ 59 (198)
+.|+.+.-.--.+..++++|+++...... +...++.||+|.... |..+ ...
T Consensus 52 ~~g~~~~~~~f~~~~~~~~~~k~~~~~~~~~~g~~~~~~qy~~~~~~~~i~~~~~~ir~~~~DIEv~~~~~fPd~~~~~~ 131 (903)
T 3qex_A 52 IYGKPCTRKLFANMRDASQWIKRMEDIGLEALGMDDFKLAYLSDTYNYEIKYDHTKIRVANFDIEVTSPDGFPEPSQAKH 131 (903)
T ss_dssp TTSCEEEEEECSSHHHHHHHHHHHHHHTCCCBSCCSHHHHHHHHHCCSCCCCCGGGSCEEEEEEECCCTTSSCCTTTCCS
T ss_pred ccCCcccccCCCCHHHHHHHHHHhhccCcccccCcHHHHHHHHHHcccccccCcccccEEEEeEEeCCCCCCCCcccCCC
Confidence 44554333333478889999988865410 124899999998542 2222 256
Q ss_pred ceeEEEeeeCCe--EEEEEcccc-----------------------------C-----------cccHHHHHhh--cCCC
Q 037014 60 KIATLQLCVDTK--CLILQLLYM-----------------------------D-----------CIPLSIKNFL--SDPN 95 (198)
Q Consensus 60 ~~~liQla~~~~--~~i~~l~~~-----------------------------~-----------~~~~~L~~lL--~d~~ 95 (198)
++..|+++...+ .+++++.+. + .+...+.+++ .||+
T Consensus 132 ~Ii~It~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~f~sE~eLL~~F~~~I~~~DPD 211 (903)
T 3qex_A 132 PIDAITHYDSIDDRFYVFDLLNSPYGNVEEWSIEIAAKLQEQGGDEVPSEIIDKIIYMPFDNEKELLMEYLNFWQQKTPV 211 (903)
T ss_dssp CCCEEEEEETTTTEEEEEEECEETTEECCCCCHHHHHSCGGGTCCCCCHHHHTTEEEEEESSHHHHHHHHHHHHHHTCCS
T ss_pred CEEEEEEEeCCCCEEEEEEeeccccccccccccccccccccccccccccccCCCeEEEEcCCHHHHHHHHHHHHHHhCCC
Confidence 788888886543 666533220 0 1223444445 3888
Q ss_pred eEEEEEeec-chHHHHhhh----cCCc---------------------------cCc--eeehHHHHHHhCCCCCCCCch
Q 037014 96 VVFVGIEVE-EIMSKLKNE----YGLC---------------------------IKK--KIDVRTLAKLHFPISCLGKPG 141 (198)
Q Consensus 96 i~kvG~~~~-~D~~~L~~~----~gi~---------------------------~~~--~~Dl~~l~~~~l~~~~~~~~~ 141 (198)
|+ +|||+. .|+-.|.++ +|+. +.| .+|+-.+++.. ....+.+.+
T Consensus 212 II-tGyN~~~FDlPYL~~RA~~l~gi~~~~~ls~~gR~~~~~~~~~~G~~~~~~i~GRv~lDl~~~~k~~-~~~~l~SYs 289 (903)
T 3qex_A 212 IL-TGWNVESFAIPYVYNRIKNIFGESTAKRLSPHRKTRVKVIENMYGSREIITLFGISVLDYIDLYKKF-SFTNQPSYS 289 (903)
T ss_dssp EE-ECSSTTTTHHHHHHHHHHHHHCHHHHGGGSTTSCEEEEEEEETTEEEEEEEETTCEECCHHHHHHHH-SCCCCSCCC
T ss_pred EE-EecCCccCCHHHHHHHHHHHcCCcccccccccccccccchhhhcCCceeEEEeCeEEeeHHHHHHHh-CccCcCCCC
Confidence 75 599986 488766531 3431 111 46776776542 112245889
Q ss_pred HHHHHHHHcCCcCCCCCceeccCCCCCCCCHHHHHHHHHhHHHHHHHHHHH
Q 037014 142 LKVLAYQLLRLRPWKPKKVCMNNLESGFLDTELIKFACIDAYVSCAIGTKL 192 (198)
Q Consensus 142 L~~l~~~~l~~~l~K~~~~~~s~W~~~~L~~~Qi~YAA~Da~~~~~l~~~L 192 (198)
|+++|+.+||..-..-. ...+.|.... ...-+.|.-.||...++|+.++
T Consensus 290 Ld~VA~~lLg~~K~d~~-~~I~~~~~~d-~~~L~~Ycl~Da~Lt~~L~~Kl 338 (903)
T 3qex_A 290 LDYISEFELNVGKLKYD-GPISKLRESN-HQRYISYNIIAVYRVLQIDAKR 338 (903)
T ss_dssp HHHHHHHHHCCCCCCCS-SCGGGHHHHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCccccH-HHHHHHHhcC-HHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999997422111 1223343211 1223599999999999999884
No 32
>2a1r_A Poly(A)-specific ribonuclease PARN; DEDD, nuclease domain, hydrolase-RNA complex; 2.60A {Homo sapiens} PDB: 2a1s_A
Probab=88.28 E-value=1.2 Score=38.32 Aligned_cols=106 Identities=16% Similarity=0.128 Sum_probs=61.4
Q ss_pred HHHHHhhcCCCeEEEEEeecchHHHHhhhcCCc---------------cCceeehHHHHHHhCCC-CCCCCchHHHHHHH
Q 037014 85 LSIKNFLSDPNVVFVGIEVEEIMSKLKNEYGLC---------------IKKKIDVRTLAKLHFPI-SCLGKPGLKVLAYQ 148 (198)
Q Consensus 85 ~~L~~lL~d~~i~kvG~~~~~D~~~L~~~~gi~---------------~~~~~Dl~~l~~~~l~~-~~~~~~~L~~l~~~ 148 (198)
..+..+.++.++ -||||+-.|+..+.+.|--. ...++|+..++.. .+. ......+|.+|...
T Consensus 272 ~V~~~L~~s~Kp-iVGHN~llDl~~l~~~F~~pLP~~~~eFk~~i~~lFP~i~DTK~la~~-~~~~~~~~~~sL~~l~~~ 349 (430)
T 2a1r_A 272 RVIHAIANSGKL-VIGHNMLLDVMHTVHQFYCPLPADLSEFKEMTTCVFPRLLDTKLMAST-QPFKDIINNTSLAELEKR 349 (430)
T ss_dssp HHHHHHHHHCCE-EEESSCHHHHHHHHHHHTCCCCSSHHHHHHHHHHHCSSEEEHHHHHTS-TTTTTTCSCCSHHHHHHH
T ss_pred HHHHHHHhCCCc-eEechhHHHHHHHHHHhccCCCCCHHHHHHHHHHHCCceeehHHhhhc-cchhhccCCCCHHHHHHH
Confidence 344444455554 59999999999888765211 1468999777642 111 11235789998776
Q ss_pred HcCCcCCCCCceeccC-CCCCCCCHHHHHHHHHhHHHHHHHHHHHh
Q 037014 149 LLRLRPWKPKKVCMNN-LESGFLDTELIKFACIDAYVSCAIGTKLL 193 (198)
Q Consensus 149 ~l~~~l~K~~~~~~s~-W~~~~L~~~Qi~YAA~Da~~~~~l~~~L~ 193 (198)
+-......+ .+...+ -.+-.-+.++.+=|+.|||..-.+|-+|.
T Consensus 350 l~~~~~~~p-~i~~~~~~~~y~~~~~~~HeAGyDa~mTG~vFi~l~ 394 (430)
T 2a1r_A 350 LKETPFNPP-KVESAEGFPSYDTASEQLHEAGYDAYITGLCFISMA 394 (430)
T ss_dssp TTSTTCCCC-CEEECTTCCCC-----CCCCHHHHHHHHHHHHHHHH
T ss_pred HHhCCCCCC-eeecCCCccccccCCCCccchHHHHHHHHHHHHHHH
Confidence 533322212 333321 01111123566889999999999888876
No 33
>2py5_A DNA polymerase; protein-DNA complex, replication, transferase/DNA complex; HET: DNA; 1.60A {Bacillus phage PHI29} SCOP: c.55.3.5 e.8.1.1 PDB: 1xhz_A* 1xhx_A* 2ex3_A* 1xi1_A* 2pyj_A* 2pyl_A* 2pzs_A*
Probab=88.01 E-value=2.4 Score=37.77 Aligned_cols=135 Identities=7% Similarity=-0.109 Sum_probs=78.8
Q ss_pred CeEEEEeeeecCCCCCCCCCceeEEEeeeCCe--EEEEEccccCcccHHHHHhhcCCCeEEEEEeecchHHHHhhh---c
Q 037014 40 ILIVGLNCKWKPHPIPSLSGKIATLQLCVDTK--CLILQLLYMDCIPLSIKNFLSDPNVVFVGIEVEEIMSKLKNE---Y 114 (198)
Q Consensus 40 ~~~vg~D~Ew~~~~~~~~~~~~~liQla~~~~--~~i~~l~~~~~~~~~L~~lL~d~~i~kvG~~~~~D~~~L~~~---~ 114 (198)
..++.+|+|..+. +..+++-.+.+.+++. .+-.. ..+-+.+.. +.+.++..++|+++.|...|.++ .
T Consensus 6 ~~i~~~D~Et~~d---~~~~~~~~i~~~~~~~~~~~~~~----~~l~~fi~~-~~~~~~~i~~hNl~FD~~~l~~~~~~~ 77 (575)
T 2py5_A 6 RKMYSCAFETTTK---VEDCRVWAYGYMNIEDHSEYKIG----NSLDEFMAW-VLKVQADLYFHNLKFAGAFIINWLERN 77 (575)
T ss_dssp CCEEEEEEEECCB---TTBCCEEEEEEEESSCTTCEEEE----SCHHHHHHH-HHHHCCEEEETTHHHHHHHHHHHHHHT
T ss_pred ceEEEEEEEeecC---CCCCceEEEEEEeCCceEEEEec----hhHHHHHHH-HHHcCCEEEEEChhhhHHHHHHHHHHh
Confidence 3799999999664 3445666666666644 22112 123333333 33344557789999999888753 2
Q ss_pred CCc-------------c-Cc------------------eeehHHHHHHhCCCCCCCCchHHHHHHHHcCCcCCCC----C
Q 037014 115 GLC-------------I-KK------------------KIDVRTLAKLHFPISCLGKPGLKVLAYQLLRLRPWKP----K 158 (198)
Q Consensus 115 gi~-------------~-~~------------------~~Dl~~l~~~~l~~~~~~~~~L~~l~~~~l~~~l~K~----~ 158 (198)
|++ + ++ .++..+.+.. + ..||+.+++.+... ..|. .
T Consensus 78 ~~~~~~~~~p~~~~~~i~r~~~~~~~~i~~~~~~k~~~~i~~~Ds~~~-~------~~SL~~~a~~f~~~-~~K~~~py~ 149 (575)
T 2py5_A 78 GFKWSADGLPNTYNTIISRMGQWYMIDICLGYKGKRKIHTVIYDSLKK-L------PFPVKKIAKDFKLT-VLKGDIDYH 149 (575)
T ss_dssp TCEECTTCCTTEEEEEEBTTCCEEEEEEEEEEETTEEEEEEEEEHHHH-S------CSCHHHHHHHTTCC-CCSSCCCTT
T ss_pred CcccccccccccccceeccCCeEEEEEEEEecCCCceEEEEEEEhHhh-h------hhhHHHHHHHhCCc-ccCCccCcc
Confidence 311 1 00 1222222221 1 46999999876432 1221 1
Q ss_pred ceeccCCCCCCCCHHHHHHHHHhHHHHHHHHHHHh
Q 037014 159 KVCMNNLESGFLDTELIKFACIDAYVSCAIGTKLL 193 (198)
Q Consensus 159 ~~~~s~W~~~~L~~~Qi~YAA~Da~~~~~l~~~L~ 193 (198)
.++.-+| .+.++-+.|+..|+..+.+++.+..
T Consensus 150 ~~~~~~~---~~~~~~~~Y~~~Dv~ll~~i~~~~f 181 (575)
T 2py5_A 150 KERPVGY---KITPEEYAYIKNDIQIIAEALLIQF 181 (575)
T ss_dssp SCCCTTC---CCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCcccc---hhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222234 4888999999999999999988654
No 34
>3k59_A POL II, DNA polymerase II; protein-DNA complex, DNA damage, DNA repair, DNA-binding; HET: DNA DOC DCP; 1.92A {Escherichia coli} PDB: 3k57_A* 3k58_A* 3k5l_A* 3k5m_A* 3k5n_A* 3k5o_A* 3maq_A* 1q8i_A*
Probab=85.16 E-value=12 Score=34.62 Aligned_cols=172 Identities=14% Similarity=0.109 Sum_probs=98.2
Q ss_pred EEcCeEEEEEEcCCHHHHHHHHHHHHhhcc----------------------------------------------CCCe
Q 037014 8 SFCGKIIETTVTSTTSVAENWLLKIRSLHS----------------------------------------------AQIL 41 (198)
Q Consensus 8 ~f~~~~i~~~v~~~~~~~~~~i~~~~~~~~----------------------------------------------~~~~ 41 (198)
.|.|+++.-.+++++..+.++-+.+.+... ..-+
T Consensus 75 ~~~~~~~~~i~~~~~~~~~~~r~~l~~~g~~v~EadI~~~~RfliD~~i~~~~w~~~~~~~~~~~~~~~~~~~~~~p~lr 154 (786)
T 3k59_A 75 DFHRQPVYGLYCRAHRQLMNYEKRLREGGVTVYEADVRPPERYLMERFITSPVWVEGDMHNGTIVNARLKPHPDYRPPLK 154 (786)
T ss_dssp CTTCCEEEEEEESSHHHHHHHHHHHHHTTCCCBSTTCCHHHHHHHHTTCSSEEEEEEEEETTEEEEEEEEECSSCCCCCC
T ss_pred eecCceEEEEEECCHHHHHHHHHHHHHcCCceeeccCChhheeeEecCcccceEEEEeccCCceecceEeeCCCCCCCCe
Confidence 345777776777899998888777653200 0127
Q ss_pred EEEEeeeecCCCCCCCCCceeEEEeeeC--C--eEEEEEcccc-------------C--cccHHHHHhh--cCCCeEEEE
Q 037014 42 IVGLNCKWKPHPIPSLSGKIATLQLCVD--T--KCLILQLLYM-------------D--CIPLSIKNFL--SDPNVVFVG 100 (198)
Q Consensus 42 ~vg~D~Ew~~~~~~~~~~~~~liQla~~--~--~~~i~~l~~~-------------~--~~~~~L~~lL--~d~~i~kvG 100 (198)
+++||+|-... + .+++++.. + .++++..+.. + .+...+.+++ .||+| .+|
T Consensus 155 ilsfDIE~~~~---g-----~i~~I~~~~~~~~~v~~l~~~~~~~~~~~~~V~~f~~E~~lL~~f~~~i~~~dPDi-i~g 225 (786)
T 3k59_A 155 WVSIDIETTRH---G-----ELYCIGLEGCGQRIVYMLGPENGDASSLDFELEYVASRPQLLEKLNAWFANYDPDV-IIG 225 (786)
T ss_dssp EEEEEEEECTT---S-----CEEEEEEEETTEEEEEEESSCCSCCTTCSSEEEEESSHHHHHHHHHHHHHHHCCSE-EEE
T ss_pred EEEEEEEEcCC---C-----CEEEEEecCCCCCeEEEEecCCCCCCCCCceEEEeCCHHHHHHHHHHHHHHcCCCE-EEe
Confidence 88888887632 1 24555532 2 1444433310 0 1223333333 37775 689
Q ss_pred Eeecc-hHHHHhh---hcCCcc---------------------------CceeehHHHHHHhCCCCCCCCchHHHHHHHH
Q 037014 101 IEVEE-IMSKLKN---EYGLCI---------------------------KKKIDVRTLAKLHFPISCLGKPGLKVLAYQL 149 (198)
Q Consensus 101 ~~~~~-D~~~L~~---~~gi~~---------------------------~~~~Dl~~l~~~~l~~~~~~~~~L~~l~~~~ 149 (198)
||+.+ |+..|.+ .+|+.. +-.+|+-.+.+.. .. .+.+.+|+++|+.+
T Consensus 226 ~N~~~FD~pyL~~Ra~~~~i~~~lGR~~~~~~~~~~~~~~~~~~~~i~GRv~lDl~~~lk~~-~~-~l~SysL~~Va~~~ 303 (786)
T 3k59_A 226 WNVVQFDLRMLQKHAERYRLPLRLGRDNSELEWREHGFKNGVFFAQAKGRLIIDGIEALKSA-FW-NFSSFSLETVAQEL 303 (786)
T ss_dssp SSTTTTHHHHHHHHHHHHTCCCCCBTTTBCCEEEECSSSTTCEEEECTTCEEEEHHHHHHHT-TC-CCSCCSHHHHHHHH
T ss_pred cCCccCcHHHHHHHHHHhCCCceeccCCCcccccccccCCCceeEEEcCEEEEEhHHHHHhc-cC-CCCCCCHHHHHHHH
Confidence 99875 9987763 233321 1146766665531 11 24589999999999
Q ss_pred cCCcCCCCCc----eeccC-CCCCCCCHHHHHHHHHhHHHHHHHHHHH
Q 037014 150 LRLRPWKPKK----VCMNN-LESGFLDTELIKFACIDAYVSCAIGTKL 192 (198)
Q Consensus 150 l~~~l~K~~~----~~~s~-W~~~~L~~~Qi~YAA~Da~~~~~l~~~L 192 (198)
||..-..... -...+ |...+ ..-+.|.-.||...++|+.++
T Consensus 304 Lg~~K~~~~~~~~~~eI~~~~~~~~--~~L~~Y~l~Da~L~~~L~~kl 349 (786)
T 3k59_A 304 LGEGKSIDNPWDRMDEIDRRFAEDK--PALATYNLKNCELVTQIFHKT 349 (786)
T ss_dssp HCCCCC-CCHHHHHHHHHHHHHHCH--HHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCCCcccCccccHHHHHHHHhcCH--HHHHHHHHHHHHHHHHHHHHh
Confidence 9965211100 01111 22221 344699999999999999986
No 35
>3cg7_A CRN-4, cell death-related nuclease 4; hydrolase, apoptosis, 3'-5' exonuclease, deddh; 2.50A {Caenorhabditis elegans} PDB: 3cm5_A 3cm6_A
Probab=82.85 E-value=1 Score=36.74 Aligned_cols=91 Identities=7% Similarity=-0.017 Sum_probs=56.8
Q ss_pred HHHHhhcCCCeEEEEEee------cchH-HHHhh---hcCCcc----CceeehHHHHHHhCCCCC----CCCchHHHHHH
Q 037014 86 SIKNFLSDPNVVFVGIEV------EEIM-SKLKN---EYGLCI----KKKIDVRTLAKLHFPISC----LGKPGLKVLAY 147 (198)
Q Consensus 86 ~L~~lL~d~~i~kvG~~~------~~D~-~~L~~---~~gi~~----~~~~Dl~~l~~~~l~~~~----~~~~~L~~l~~ 147 (198)
.+.+++.+..+ |||++ ..|+ ..|.+ .+|+.. ...+|+..++...++... ..+++|.++++
T Consensus 101 ~f~~~l~~~~l--vahn~~lv~~g~fD~~~fL~~~~~~~g~~~p~~~~~~iDt~~l~~~~~~~~~~~~~~~~~~L~~l~~ 178 (308)
T 3cg7_A 101 QFQQWLITLGL--EEGKFAFVCDSRQDLWRIAQYQMKLSNIQMPAFFRQYINLYKIFTNEMDRMGPKELSATTNIGKMNE 178 (308)
T ss_dssp HHHHHHHHHCC--CTTSEEEEESSSHHHHTHHHHHHHHTTCCCCGGGSEEEEHHHHHHHHHHHHCCCCCCCCSHHHHHHH
T ss_pred HHHHHHHhCCc--CCcceEEeccCcccHHHHHHHHHHHcCCCCchhhcceeeHHHHHHHHhccccccccccCcCHHHHHH
Confidence 34455654322 44444 8898 56653 456654 357999888765543211 12578999996
Q ss_pred HHcCCcCCCCCceeccCCCCCCCCHHHHHHHHHhHHHHHHHHHHHhccc
Q 037014 148 QLLRLRPWKPKKVCMNNLESGFLDTELIKFACIDAYVSCAIGTKLLLEE 196 (198)
Q Consensus 148 ~~l~~~l~K~~~~~~s~W~~~~L~~~Qi~YAA~Da~~~~~l~~~L~~~~ 196 (198)
. +|.+.... -+-|..||.+..+|+.+|+++.
T Consensus 179 ~-~gi~~~~~-----------------~HrAl~DA~ata~l~~~l~~~~ 209 (308)
T 3cg7_A 179 Y-YDLPTIGR-----------------AHDAMDDCLNIATILQRMINMG 209 (308)
T ss_dssp H-TTCCCCSC-----------------TTCHHHHHHHHHHHHHHHHHTT
T ss_pred H-cCCCCCCC-----------------CcCHHHHHHHHHHHHHHHHHcC
Confidence 4 67654321 1336789999999999988643
No 36
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=73.68 E-value=2 Score=37.70 Aligned_cols=105 Identities=16% Similarity=0.135 Sum_probs=61.3
Q ss_pred HHHhhcCCCeEEEEEeecchHHHHhhhcCCc---------------cCceeehHHHHHHhCCC-CCCCCchHHHHHHHHc
Q 037014 87 IKNFLSDPNVVFVGIEVEEIMSKLKNEYGLC---------------IKKKIDVRTLAKLHFPI-SCLGKPGLKVLAYQLL 150 (198)
Q Consensus 87 L~~lL~d~~i~kvG~~~~~D~~~L~~~~gi~---------------~~~~~Dl~~l~~~~l~~-~~~~~~~L~~l~~~~l 150 (198)
+.+.|...+..-|||++-.|+..|.+.|--. ...++|+..++.. .+. ......+|..|.+.+-
T Consensus 268 v~~~L~~~~kpiVgHN~l~Dl~~l~~~F~~pLP~~~~eFk~~i~~lFP~i~DTK~la~~-~~~~~~~~~~~L~~l~~~l~ 346 (507)
T 3d45_A 268 VIHAIANSGKLVVGHNMLLDVMHTIHQFYCPLPADLNEFKEMAICVFPRLLDTKLMAST-QPFKDIINNTSLAELEKRLK 346 (507)
T ss_dssp HHHHHHHHCCEEEESSCHHHHHHHHHHHTCSCCSSHHHHHHHHHHHCSCEEEHHHHTTS-TTHHHHCCCCCHHHHHHHTT
T ss_pred HHHHHHhCCCeEEEechHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCceeEhHhhhhc-CccccccCCCCHHHHHHHHh
Confidence 3344445567799999999999998765211 1358899877642 110 0112568999988753
Q ss_pred CCcCCCCCceeccC-CCCCCCCHHHHHHHHHhHHHHHHHHHHHh
Q 037014 151 RLRPWKPKKVCMNN-LESGFLDTELIKFACIDAYVSCAIGTKLL 193 (198)
Q Consensus 151 ~~~l~K~~~~~~s~-W~~~~L~~~Qi~YAA~Da~~~~~l~~~L~ 193 (198)
..+...+ ++.... -.+-.-+..+.+=|+.|||..-.+|-+|.
T Consensus 347 ~~~~~~p-~i~~~~~~~~y~~~~~~~HeAGyDA~mTg~~F~kl~ 389 (507)
T 3d45_A 347 ETPFDPP-KVESAEGFPSYDTASEQLHEAGYDAYITGLCFISMA 389 (507)
T ss_dssp STTCCCC-CEEECTTSCCCC----CCCCHHHHHHHHHHHHHHHH
T ss_pred ccCCCCC-eEEecccccccccCCCCcccHHHHHHHHHHHHHHHH
Confidence 3221122 232211 00011223445779999999999999875
No 37
>2igi_A Oligoribonuclease; RNAse, exoribonuclease, exonuclease, hydrolase, mRNA decay; 1.70A {Escherichia coli} SCOP: c.55.3.5 PDB: 1yta_A 1j9a_A
Probab=70.26 E-value=15 Score=26.70 Aligned_cols=82 Identities=18% Similarity=-0.017 Sum_probs=45.8
Q ss_pred HHHHHhhcCC----CeEEEEEeecchHHHHhhhcC---Ccc-CceeehHHHHHHhCCCCCCCCchHHHHHHHHcCCcCCC
Q 037014 85 LSIKNFLSDP----NVVFVGIEVEEIMSKLKNEYG---LCI-KKKIDVRTLAKLHFPISCLGKPGLKVLAYQLLRLRPWK 156 (198)
Q Consensus 85 ~~L~~lL~d~----~i~kvG~~~~~D~~~L~~~~g---i~~-~~~~Dl~~l~~~~l~~~~~~~~~L~~l~~~~l~~~l~K 156 (198)
+.+.+++.+- +.+.|||++..|...|.+.+. ..+ ...+|+. +|..++++++.. +.+
T Consensus 86 ~~~~~~l~~~~~~~~~~lv~hn~~fD~~fL~~~~~~~~~~~~~~~~d~~---------------tl~~l~~~~~p~-~~~ 149 (180)
T 2igi_A 86 LATLEFLKQWVPAGKSPICGNSIGQDRRFLFKYMPELEAYFHYRYLDVS---------------TLKELARRWKPE-ILD 149 (180)
T ss_dssp HHHHHHHTTTSCTTTSCEEESSHHHHHHHHHHHCHHHHHHSCSCEEETH---------------HHHHHHHHHCGG-GGG
T ss_pred HHHHHHHHHhCCCCCceEEecCHHHHHHHHHHHHHHhccCCCcceeeHH---------------HHHHHHHHhChH-hhh
Confidence 3455666641 356899999999999976442 011 1234421 333344433211 100
Q ss_pred CCceeccCCCCCCCCHHHHHHHHHhHHHHHHHHHHHhc
Q 037014 157 PKKVCMNNLESGFLDTELIKFACIDAYVSCAIGTKLLL 194 (198)
Q Consensus 157 ~~~~~~s~W~~~~L~~~Qi~YAA~Da~~~~~l~~~L~~ 194 (198)
.+...+-+-|..||.+...++..+.+
T Consensus 150 ------------~i~~~~~H~Al~Da~ata~l~~~~~~ 175 (180)
T 2igi_A 150 ------------GFTKQGTHQAMDDIRESVAELAYYRE 175 (180)
T ss_dssp ------------GSCCCCCCCHHHHHHHHHHHHHHHHH
T ss_pred ------------CCCCcCCcCcHHHHHHHHHHHHHHHH
Confidence 01112235588999999999988865
No 38
>2gbz_A Oligoribonuclease; ORN, deddh, structural genomics, hydrolase; 2.30A {Xanthomonas campestris PV}
Probab=67.55 E-value=3.8 Score=30.71 Aligned_cols=86 Identities=15% Similarity=-0.046 Sum_probs=47.7
Q ss_pred HHHHhhcCCC----eEEEEEeecchHHHHhhhcCCccCceeehHHHHHHhCCCCCCCCchHHHHHHHHcCCcCCCCCcee
Q 037014 86 SIKNFLSDPN----VVFVGIEVEEIMSKLKNEYGLCIKKKIDVRTLAKLHFPISCLGKPGLKVLAYQLLRLRPWKPKKVC 161 (198)
Q Consensus 86 ~L~~lL~d~~----i~kvG~~~~~D~~~L~~~~gi~~~~~~Dl~~l~~~~l~~~~~~~~~L~~l~~~~l~~~l~K~~~~~ 161 (198)
.+.+|+.+.- ...|||++..|...|.+.+.- +. ..+..+.....+|..++++++.. +.+
T Consensus 91 ~~~~~l~~~~~~~~~~lvghn~~FD~~fL~~~~~~----------~~-~~~~~~~~d~~~l~~l~~~~~p~-~~~----- 153 (194)
T 2gbz_A 91 QTVAFLGEWIRAGASPMCGNSICQDRRFLHRQMSR----------LE-RYFHYRNLDVSTIKELARRWAPA-VAS----- 153 (194)
T ss_dssp HHHHHHTTTCCTTSSCEEESSHHHHHHHHHHHCHH----------HH-HHSCSCEEEHHHHHHHHHHHCGG-GGT-----
T ss_pred HHHHHHHHhCCCCCceEEecCHHHhHHHHHHHHHH----------hc-ccCCCccccHHHHHHHHHHhCHH-HHh-----
Confidence 4556666532 348999999999999765421 00 11111111122455566654321 111
Q ss_pred ccCCCCCCCCHHHHHHHHHhHHHHHHHHHHHhcc
Q 037014 162 MNNLESGFLDTELIKFACIDAYVSCAIGTKLLLE 195 (198)
Q Consensus 162 ~s~W~~~~L~~~Qi~YAA~Da~~~~~l~~~L~~~ 195 (198)
.+...+-+-|-.||.+..+++..+.+.
T Consensus 154 -------~i~~~~~H~Al~Da~ata~ll~~~~~~ 180 (194)
T 2gbz_A 154 -------GFAKSSAHTALSDVRDSIDELRHYRQF 180 (194)
T ss_dssp -------TCCCCSCCSHHHHHHHHHHHHHHHHTT
T ss_pred -------CCCCCCCcccHHHHHHHHHHHHHHHHH
Confidence 011122356889999999999888753
No 39
>2cof_A Protein KIAA1914; PH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=58.25 E-value=24 Score=23.04 Aligned_cols=33 Identities=18% Similarity=0.237 Sum_probs=27.3
Q ss_pred eeEEEEEcCeEEEEEEcCCHHHHHHHHHHHHhh
Q 037014 3 YAQSISFCGKIIETTVTSTTSVAENWLLKIRSL 35 (198)
Q Consensus 3 ~~~~v~f~~~~i~~~v~~~~~~~~~~i~~~~~~ 35 (198)
+.+.+...+.......++++++..+|++.+...
T Consensus 67 ~~F~i~~~~~r~~~l~A~s~~e~~~Wi~al~~~ 99 (107)
T 2cof_A 67 YSFRILHKGEELAKLEAKSSEEMGHWLGLLLSE 99 (107)
T ss_dssp CEEEEEETTEEEEEEECSSHHHHHHHHHHHHHH
T ss_pred eEEEEEeCCCeEEEEEcCCHHHHHHHHHHHHHH
Confidence 567777776777777889999999999999875
No 40
>1wgq_A FYVE, rhogef and PH domain containing 6; ethanol decreased 4; pleckstrin homoloy domain, signal transduction, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1
Probab=50.55 E-value=38 Score=22.02 Aligned_cols=33 Identities=6% Similarity=0.104 Sum_probs=26.6
Q ss_pred eeEEEEEcCeEEEEEEcCCHHHHHHHHHHHHhh
Q 037014 3 YAQSISFCGKIIETTVTSTTSVAENWLLKIRSL 35 (198)
Q Consensus 3 ~~~~v~f~~~~i~~~v~~~~~~~~~~i~~~~~~ 35 (198)
+.+.|...+.......++++++..+|++.+...
T Consensus 69 ~~F~i~~~~~~~~~~~a~s~~e~~~Wi~al~~a 101 (109)
T 1wgq_A 69 KVFQLLHKGMVFYVFKADDAHSTQRWIDAFQEG 101 (109)
T ss_dssp SEEEEEETTEEEEEEECSSHHHHHHHHHHHHHH
T ss_pred cEEEEEeCCCeEEEEECCCHHHHHHHHHHHHHH
Confidence 567777777666666788999999999999875
No 41
>3aj4_A Pleckstrin homology domain-containing family B ME; antiparallel beta sheet, protein transport; HET: SEP EDO; 1.00A {Homo sapiens} PDB: 3via_A 2dhi_A
Probab=49.92 E-value=26 Score=22.90 Aligned_cols=33 Identities=9% Similarity=0.082 Sum_probs=25.2
Q ss_pred eeEEEEEcCeEEEEEEcCCHHHHHHHHHHHHhh
Q 037014 3 YAQSISFCGKIIETTVTSTTSVAENWLLKIRSL 35 (198)
Q Consensus 3 ~~~~v~f~~~~i~~~v~~~~~~~~~~i~~~~~~ 35 (198)
+.+.|...+.......++++++..+|++.+...
T Consensus 77 ~~F~i~~~~~r~~~l~a~s~~e~~~Wi~al~~a 109 (112)
T 3aj4_A 77 CMLQIVCRDGKTISLCAESTDDCLAWKFTLQDS 109 (112)
T ss_dssp GEEEEEETTSCEEEEECSSHHHHHHHHHHHHHH
T ss_pred cEEEEEecCCcEEEEEeCCHHHHHHHHHHHHHH
Confidence 456676665555566788999999999999875
No 42
>3rcp_A Pleckstrin homology domain-containing family A ME; FAPP1, PH domain, lipid-binding, membrane, membrane protein; 1.90A {Homo sapiens} PDB: 2kcj_A
Probab=48.65 E-value=35 Score=21.84 Aligned_cols=33 Identities=12% Similarity=0.143 Sum_probs=26.2
Q ss_pred eeEEEEEcCeEEEEEEcCCHHHHHHHHHHHHhh
Q 037014 3 YAQSISFCGKIIETTVTSTTSVAENWLLKIRSL 35 (198)
Q Consensus 3 ~~~~v~f~~~~i~~~v~~~~~~~~~~i~~~~~~ 35 (198)
+.+.+...+.......++++++.++|++.+...
T Consensus 59 ~~F~i~~~~~r~~~l~a~s~~e~~~Wi~al~~a 91 (103)
T 3rcp_A 59 TRMELIIPGEQHFYMKAVNAAERQRWLVALGSS 91 (103)
T ss_dssp SEEEEEETTTEEEEEECSSHHHHHHHHHHHHTT
T ss_pred ceEEEEeCCCCEEEEECCCHHHHHHHHHHHHHH
Confidence 456677766666666788999999999999975
No 43
>4gmj_B CCR4-NOT transcription complex subunit 7; mRNA decay, deadenylase, RNA bindin; HET: GOL; 2.70A {Homo sapiens}
Probab=46.83 E-value=71 Score=25.60 Aligned_cols=80 Identities=23% Similarity=0.074 Sum_probs=55.6
Q ss_pred cCCCeEEEEEeecchHHHHhhhc-C--Cc-------------cCceeehHHHHHHhCCCCCCCCchHHHHHHHHcCCc-C
Q 037014 92 SDPNVVFVGIEVEEIMSKLKNEY-G--LC-------------IKKKIDVRTLAKLHFPISCLGKPGLKVLAYQLLRLR-P 154 (198)
Q Consensus 92 ~d~~i~kvG~~~~~D~~~L~~~~-g--i~-------------~~~~~Dl~~l~~~~l~~~~~~~~~L~~l~~~~l~~~-l 154 (198)
-++++..|.+....|.-.|.+.+ | +. ...++|+..++...-+ + +.||+++|+. ||.+ +
T Consensus 147 l~~~v~WvtfH~~yDf~yL~k~lt~~~LP~~~~eF~~~l~~~FP~vYD~K~l~~~~~~---l-~ggL~~lA~~-L~v~r~ 221 (285)
T 4gmj_B 147 LCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELDFFEILRLFFPVIYDVKYLMKSCKN---L-KGGLQEVAEQ-LELERI 221 (285)
T ss_dssp SCTTCEEEESSCHHHHHHHHHHHHTSCCCSSHHHHHHHHHHHCSCEEEHHHHGGGSTT---C-CSCHHHHHHH-TTCCCC
T ss_pred hcCCCceEEecchhhHHHHHHHHhCCCCCCCHHHHHHHHHHHCchhhhHHHHHHhccc---c-CChHHHHHHh-CCCCCC
Confidence 46889999998889997776532 1 11 1368899888764322 2 4589999986 5543 2
Q ss_pred CCCCceeccCCCCCCCCHHHHHHHHHhHHHHHHHHHHHhc
Q 037014 155 WKPKKVCMNNLESGFLDTELIKFACIDAYVSCAIGTKLLL 194 (198)
Q Consensus 155 ~K~~~~~~s~W~~~~L~~~Qi~YAA~Da~~~~~l~~~L~~ 194 (198)
.+. +=|+.|++....+|-+|.+
T Consensus 222 g~~------------------HqAGsDSllT~~~F~kl~~ 243 (285)
T 4gmj_B 222 GPQ------------------HQAGSDSLLTGMAFFKMRE 243 (285)
T ss_dssp SCT------------------TSHHHHHHHHHHHHHHHHH
T ss_pred CCC------------------CcchhHHHHHHHHHHHHHH
Confidence 221 2388999999999999864
No 44
>2i5f_A Pleckstrin; PH domain, protein-inositol phosphate complex, lipid binding protein; HET: 5IP; 1.35A {Homo sapiens} SCOP: b.55.1.1 PDB: 2i5c_A* 1zm0_A
Probab=42.66 E-value=36 Score=21.94 Aligned_cols=33 Identities=12% Similarity=0.104 Sum_probs=24.3
Q ss_pred eeEEEEEcCeEEEEEEcCCHHHHHHHHHHHHhh
Q 037014 3 YAQSISFCGKIIETTVTSTTSVAENWLLKIRSL 35 (198)
Q Consensus 3 ~~~~v~f~~~~i~~~v~~~~~~~~~~i~~~~~~ 35 (198)
+.+.|...+.......++++++..+|++.+...
T Consensus 75 ~~F~i~~~~~~~~~l~a~s~~e~~~Wi~ai~~~ 107 (109)
T 2i5f_A 75 NLFEIITADEVHYFLQAATPKERTEWIKAIQMA 107 (109)
T ss_dssp SEEEEECTTCCEEEEECSSHHHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCEEEEEcCCHHHHHHHHHHHHHH
Confidence 456666665554555688999999999998763
No 45
>1pls_A Pleckstrin homology domain; phosphorylation; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=42.46 E-value=48 Score=21.60 Aligned_cols=33 Identities=9% Similarity=0.108 Sum_probs=25.3
Q ss_pred eeEEEEEcCeEEEEEEcCCHHHHHHHHHHHHhh
Q 037014 3 YAQSISFCGKIIETTVTSTTSVAENWLLKIRSL 35 (198)
Q Consensus 3 ~~~~v~f~~~~i~~~v~~~~~~~~~~i~~~~~~ 35 (198)
+.+.|...+.......++++++..+|++.+...
T Consensus 67 ~~F~i~~~~~r~~~l~a~s~~e~~~Wi~ai~~~ 99 (113)
T 1pls_A 67 FVFKITTTKQQDHFFQAAFLEERDAWVRDINKA 99 (113)
T ss_dssp SEEEEEETTTEEEEEECSSHHHHHHHHHHHHHH
T ss_pred cEEEEEcCCCCEEEEECCCHHHHHHHHHHHHHH
Confidence 456676666555556788999999999999864
No 46
>3q7c_A Nucleoprotein; deddh exonuclease, 3' exonuclease, hydrolase; 1.50A {Lassa virus} PDB: 3q7b_A 4fvu_A
Probab=39.70 E-value=51 Score=25.42 Aligned_cols=82 Identities=17% Similarity=0.130 Sum_probs=53.0
Q ss_pred CeEEEEeeeecCCCCCCCCCceeEEEeeeCCeEEEEEcccc-----------------------CcccHHHHHhhc-CCC
Q 037014 40 ILIVGLNCKWKPHPIPSLSGKIATLQLCVDTKCLILQLLYM-----------------------DCIPLSIKNFLS-DPN 95 (198)
Q Consensus 40 ~~~vg~D~Ew~~~~~~~~~~~~~liQla~~~~~~i~~l~~~-----------------------~~~~~~L~~lL~-d~~ 95 (198)
..-..+|+|-.|. .+-.+|+.|=.++ .|| ++.+. +.-|.-+..+++ -|.
T Consensus 57 ~~ttWiDIEG~p~----DPVElAiyQP~sg--~YI-HcyR~P~D~K~FK~~SKySHGillkDl~~aqPGL~S~vi~~LP~ 129 (243)
T 3q7c_A 57 NAKTWMDIEGRPE----DPVEIALYQPSSG--CYI-HFFREPTDLKQFKQDAKYSHGIDVTDLFATQPGLTSAVIDALPR 129 (243)
T ss_dssp TSCCEEEEESCTT----SCSEEEEEETTTT--EEE-EEECCCSCHHHHHHHHHHTTCBCGGGGTTBCTTHHHHHHHHSCT
T ss_pred CCCeEEecCCCCC----CCeEEEEeccCCC--cEE-EEecCCcchhhhcccCccccceehhhhhhcCCchHHHHHHhCCc
Confidence 3678899998775 4567888887666 666 55432 123333444442 245
Q ss_pred eEEEEEeecchHHHHhhhcCCccCceeehHHHH
Q 037014 96 VVFVGIEVEEIMSKLKNEYGLCIKKKIDVRTLA 128 (198)
Q Consensus 96 i~kvG~~~~~D~~~L~~~~gi~~~~~~Dl~~l~ 128 (198)
-..+...-..|.++|...+|-.=-.++|+..-.
T Consensus 130 nMVlT~QGsDDIrkLld~hGRrDiKlIDV~lt~ 162 (243)
T 3q7c_A 130 NMVITCQGSDDIRKLLESQGRKDIKLIDIALSK 162 (243)
T ss_dssp TCEEEESSHHHHHHHHHHTTCTTSEEEECCCCH
T ss_pred CcEEEeeChHHHHHHHHhcCCccceEEEeecCH
Confidence 555667778999999988886555577775443
No 47
>2d9v_A Pleckstrin homology domain-containing protein family B member 1; PH domain, phret1, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=38.66 E-value=46 Score=22.66 Aligned_cols=33 Identities=9% Similarity=-0.012 Sum_probs=24.6
Q ss_pred eeEEEEEcCeEEEEEEcCCHHHHHHHHHHHHhh
Q 037014 3 YAQSISFCGKIIETTVTSTTSVAENWLLKIRSL 35 (198)
Q Consensus 3 ~~~~v~f~~~~i~~~v~~~~~~~~~~i~~~~~~ 35 (198)
+.+.|...+...+...++++++.++|++.+...
T Consensus 80 ~~F~I~~~~~r~~~l~A~s~~e~~~Wi~al~~a 112 (130)
T 2d9v_A 80 GLLTVNLREGSRLHLCAETRDDAIAWKTALMEA 112 (130)
T ss_dssp TEEEEEETTSCEEEEECSSHHHHHHHHHHHHHH
T ss_pred cEEEEEeCCCCEEEEEcCCHHHHHHHHHHHHHH
Confidence 456777744334555788999999999999975
No 48
>2d9y_A Pleckstrin homology domain-containing protein family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=36.62 E-value=46 Score=21.69 Aligned_cols=32 Identities=9% Similarity=0.117 Sum_probs=23.7
Q ss_pred eEEEEEcCeEEEEEEcCCHHHHHHHHHHHHhh
Q 037014 4 AQSISFCGKIIETTVTSTTSVAENWLLKIRSL 35 (198)
Q Consensus 4 ~~~v~f~~~~i~~~v~~~~~~~~~~i~~~~~~ 35 (198)
.+.|...+.......++++++..+|++.+...
T Consensus 76 ~F~i~~~~~r~~~l~a~s~~e~~~Wi~al~~~ 107 (117)
T 2d9y_A 76 TFKAEHAGVRTYFFSAESPEEQEAWIQAMGEA 107 (117)
T ss_dssp EEEEECSSSCEEEEECSSHHHHHHHHHHHHHT
T ss_pred EEEEEcCCCcEEEEEcCCHHHHHHHHHHHHHH
Confidence 45554455455556788999999999999875
No 49
>2w2x_D 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma-2; hydrolase, phospholipase C, phosphoinositides, RHO gtpases, RAC, SH2 domain; HET: GSP; 2.30A {Homo sapiens} PDB: 2w2w_A* 2w2x_C* 2k2j_A
Probab=35.92 E-value=42 Score=22.74 Aligned_cols=33 Identities=12% Similarity=0.113 Sum_probs=23.8
Q ss_pred eeEEEEEcC--eEEEEEEcCCHHHHHHHHHHHHhh
Q 037014 3 YAQSISFCG--KIIETTVTSTTSVAENWLLKIRSL 35 (198)
Q Consensus 3 ~~~~v~f~~--~~i~~~v~~~~~~~~~~i~~~~~~ 35 (198)
|.|.+...+ +......++++++..+|++.+.+.
T Consensus 83 ~~F~I~~~~~~~~~~~~~A~s~ee~~~Wi~ai~~a 117 (124)
T 2w2x_D 83 FVFILEPKQQGDPPVEFATDKVEELFEWFQSIREI 117 (124)
T ss_dssp EEEEEEECC--CCCEEEEECCCHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCceEEEEECCHHHHHHHHHHHHHH
Confidence 556666643 234445678999999999999875
No 50
>3cxb_B Pleckstrin homology domain-containing family M member 2; SIFA, SKIP, complex, virulence, cytoplasm, membrane, polymorphism, signaling protein; 2.60A {Homo sapiens} PDB: 3hw2_B
Probab=34.93 E-value=45 Score=22.13 Aligned_cols=33 Identities=6% Similarity=0.126 Sum_probs=24.1
Q ss_pred eeEEEEEcCeEEEEEEcCCHHHHHHHHHHHHhh
Q 037014 3 YAQSISFCGKIIETTVTSTTSVAENWLLKIRSL 35 (198)
Q Consensus 3 ~~~~v~f~~~~i~~~v~~~~~~~~~~i~~~~~~ 35 (198)
+.|.+.+.+...+.--++++++.++|++.+...
T Consensus 67 ~~F~l~~~~~~~y~f~A~s~ee~~~Wi~ai~~~ 99 (112)
T 3cxb_B 67 HAFQVILSDRPCLELSAESEAEMAEWMQHLCQA 99 (112)
T ss_dssp TEEEEEETTSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCEEEEEcCCHHHHHHHHHHHHHH
Confidence 456666654444445678999999999999875
No 51
>1u5d_A SKAP55, SRC kinase-associated phosphoprotein of 55 kDa; PH domain, signaling protein; 1.70A {Homo sapiens} SCOP: b.55.1.1
Probab=34.88 E-value=42 Score=21.39 Aligned_cols=33 Identities=12% Similarity=0.169 Sum_probs=24.0
Q ss_pred eeEEEEEcCeEEEEEEcCCHHHHHHHHHHHHhh
Q 037014 3 YAQSISFCGKIIETTVTSTTSVAENWLLKIRSL 35 (198)
Q Consensus 3 ~~~~v~f~~~~i~~~v~~~~~~~~~~i~~~~~~ 35 (198)
+.+.|...+.......++++++..+|++.+...
T Consensus 71 ~~F~i~~~~~r~~~l~a~s~~e~~~Wi~ai~~~ 103 (108)
T 1u5d_A 71 SCFELTSQDRRTYEFTATSPAEARDWVDQISFL 103 (108)
T ss_dssp GEEEEECSSSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred ceEEEEcCCCcEEEEECCCHHHHHHHHHHHHHH
Confidence 456666665344445678999999999998764
No 52
>1wg7_A Dedicator of cytokinesis protein 9; pleckstrin homology domain, zizimin1, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=33.62 E-value=51 Score=22.83 Aligned_cols=33 Identities=12% Similarity=0.251 Sum_probs=25.4
Q ss_pred eeEEEEEcCeEEEEEEcCCHHHHHHHHHHHHhh
Q 037014 3 YAQSISFCGKIIETTVTSTTSVAENWLLKIRSL 35 (198)
Q Consensus 3 ~~~~v~f~~~~i~~~v~~~~~~~~~~i~~~~~~ 35 (198)
+.+.|...+...+...+.++++..+|+..|...
T Consensus 90 ~~F~i~~~~~r~~~l~A~s~~e~~~Wi~al~~a 122 (150)
T 1wg7_A 90 FAFELKMQDKSSYLLAADSEVEMEEWITILNKI 122 (150)
T ss_dssp TEEEEECSSSCEEEEECSSHHHHHHHHHHHHHH
T ss_pred eEEEEEeCCCcEEEEEeCCHHHHHHHHHHHHHH
Confidence 456777776555556788999999999999764
No 53
>1wjm_A Beta-spectrin III; PH domain, signal transduction, structural genomics, spectrin beta chain, brain 2, KIAA0302; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=32.57 E-value=58 Score=21.67 Aligned_cols=33 Identities=6% Similarity=0.028 Sum_probs=23.5
Q ss_pred eeEEEEEcCeEEEEEEcCCHHHHHHHHHHHHhh
Q 037014 3 YAQSISFCGKIIETTVTSTTSVAENWLLKIRSL 35 (198)
Q Consensus 3 ~~~~v~f~~~~i~~~v~~~~~~~~~~i~~~~~~ 35 (198)
+.+.|...+...+.--++++++..+|++.+...
T Consensus 83 ~~F~i~~~~~~~~~f~A~s~~e~~~Wi~ai~~~ 115 (123)
T 1wjm_A 83 HVFKLGLQDGKEYLFQAKDEAEMSSWLRVVNAA 115 (123)
T ss_dssp SEEEEECSSSCEEEEECSSHHHHHHHHHHHHHH
T ss_pred CEEEEEEcCCcEEEEECCCHHHHHHHHHHHHHH
Confidence 456666655334445678999999999999864
No 54
>2dkp_A Pleckstrin homology domain-containing family A member 5; PH domain, pleckstrin homology domain-containing protein family A member 5; NMR {Homo sapiens}
Probab=31.08 E-value=50 Score=21.95 Aligned_cols=33 Identities=18% Similarity=0.109 Sum_probs=23.6
Q ss_pred eeEEEEEcCeEEEEEEcCCHHHHHHHHHHHHhh
Q 037014 3 YAQSISFCGKIIETTVTSTTSVAENWLLKIRSL 35 (198)
Q Consensus 3 ~~~~v~f~~~~i~~~v~~~~~~~~~~i~~~~~~ 35 (198)
+.+.|...+.......+.++++.++|++.+...
T Consensus 85 ~~F~i~~~~~r~~~l~a~s~~e~~~Wi~al~~a 117 (128)
T 2dkp_A 85 YAFKAAHPNMRTYYFCTDTGKEMELWMKAMLDA 117 (128)
T ss_dssp SEEEEECSSSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCEEEEEcCCHHHHHHHHHHHHHH
Confidence 345555554444556778999999999999875
No 55
>1wi1_A Calcium-dependent activator protein for secretion, CAPS; PH domain, PIP2 binding site, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=29.16 E-value=89 Score=21.80 Aligned_cols=32 Identities=6% Similarity=-0.062 Sum_probs=23.6
Q ss_pred eeEEEEEcCeEEEEEEcCCHHHHHHHHHHHHhh
Q 037014 3 YAQSISFCGKIIETTVTSTTSVAENWLLKIRSL 35 (198)
Q Consensus 3 ~~~~v~f~~~~i~~~v~~~~~~~~~~i~~~~~~ 35 (198)
|.|.+...|.. +...++++++.+.|++.+...
T Consensus 77 ~~F~~v~~~~t-y~~~Adseee~~~WikAi~~A 108 (126)
T 1wi1_A 77 AFFNAVKEGDT-VIFASDDEQDRILWVQAMYRA 108 (126)
T ss_dssp SEEEEECSSCE-EEEECSSHHHHHHHHHHHHHH
T ss_pred eEEEEecCCce-EEEEcCCHHHHHHHHHHHHHH
Confidence 34444555655 556788999999999999875
No 56
>1unq_A RAC-alpha serine/threonine kinase; transferase, pleckstrin homology domain, PKB, AKT, phosphoinositide, serine/threonine-protein kinase; HET: 4IP; 0.98A {Homo sapiens} SCOP: b.55.1.1 PDB: 1h10_A* 1unr_A 2uzs_A* 2uzr_A 2uvm_A* 1unp_A 2x18_A* 1p6s_A
Probab=29.15 E-value=97 Score=20.45 Aligned_cols=32 Identities=22% Similarity=0.220 Sum_probs=22.3
Q ss_pred eEEEEE---cCeEEEEEEcCCHHHHHHHHHHHHhh
Q 037014 4 AQSISF---CGKIIETTVTSTTSVAENWLLKIRSL 35 (198)
Q Consensus 4 ~~~v~f---~~~~i~~~v~~~~~~~~~~i~~~~~~ 35 (198)
.+.|.. .+.......++++++..+|++.+...
T Consensus 74 ~F~I~~~~~~~~~~~~~~a~s~~e~~~Wi~al~~~ 108 (125)
T 1unq_A 74 TFIIRCLQWTTVIERTFHVETPEEREEWTTAIQTV 108 (125)
T ss_dssp EEEEEEEETTEEEEEEEECSSHHHHHHHHHHHHHH
T ss_pred EEEEEecCCCCceeEEEEeCCHHHHHHHHHHHHHH
Confidence 455554 23344455688999999999999764
No 57
>1u5f_A SRC-associated adaptor protein; PH domain of SKAP-HOM, artefactual dimerization induced by V derived sequence, signaling protein; 1.90A {Mus musculus} SCOP: b.55.1.1 PDB: 1u5g_A
Probab=27.59 E-value=78 Score=21.83 Aligned_cols=33 Identities=18% Similarity=0.255 Sum_probs=25.4
Q ss_pred eeEEEEEcCeEEEEEEcCCHHHHHHHHHHHHhh
Q 037014 3 YAQSISFCGKIIETTVTSTTSVAENWLLKIRSL 35 (198)
Q Consensus 3 ~~~~v~f~~~~i~~~v~~~~~~~~~~i~~~~~~ 35 (198)
+.+.|...+.......+.+.++..+|++.+...
T Consensus 85 ~~F~I~~~~~r~~~l~a~s~~e~~~Wi~al~~~ 117 (148)
T 1u5f_A 85 CCFEICAPDKRIYQFTAASPKDAEEWVQQLKFI 117 (148)
T ss_dssp GEEEEECTTSCEEEEECSSHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCcEEEEECCCHHHHHHHHHHHHHH
Confidence 456777666455556788999999999999875
No 58
>1x05_A Pleckstrin; PH domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.55.1.1 PDB: 1xx0_A
Probab=27.42 E-value=52 Score=22.02 Aligned_cols=33 Identities=12% Similarity=0.104 Sum_probs=24.1
Q ss_pred eeEEEEEcCeEEEEEEcCCHHHHHHHHHHHHhh
Q 037014 3 YAQSISFCGKIIETTVTSTTSVAENWLLKIRSL 35 (198)
Q Consensus 3 ~~~~v~f~~~~i~~~v~~~~~~~~~~i~~~~~~ 35 (198)
+.+.|...+.......++++++..+|++.+...
T Consensus 86 ~~F~i~~~~~~~~~l~a~s~~e~~~Wi~al~~~ 118 (129)
T 1x05_A 86 NLFEIITADEVHYFLQAATPKERTEWIKAIQMA 118 (129)
T ss_dssp SEEEEECTTCCCCEEECSSHHHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCEEEEECCCHHHHHHHHHHHHHH
Confidence 456666655443445678999999999999875
No 59
>1upq_A PEPP1; PH domain, phosphoinositide binding, signal transduction; 1.48A {Homo sapiens} SCOP: b.55.1.1 PDB: 1upr_A*
Probab=25.86 E-value=73 Score=20.92 Aligned_cols=32 Identities=13% Similarity=0.098 Sum_probs=22.8
Q ss_pred eEEEEEcCeEEEEEEcCCHHHHHHHHHHHHhh
Q 037014 4 AQSISFCGKIIETTVTSTTSVAENWLLKIRSL 35 (198)
Q Consensus 4 ~~~v~f~~~~i~~~v~~~~~~~~~~i~~~~~~ 35 (198)
.+.+...+.......++++++..+|++.+...
T Consensus 76 ~f~i~~~~~r~~~l~a~s~~e~~~Wi~al~~a 107 (123)
T 1upq_A 76 TFTAEHPGMRTYVLAADTLEDLRGWLRALGRA 107 (123)
T ss_dssp EEEEECTTSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCeEEEEECCCHHHHHHHHHHHHHH
Confidence 34444455344455688999999999999875
No 60
>2coc_A FYVE, rhogef and PH domain containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=25.60 E-value=1.2e+02 Score=20.20 Aligned_cols=32 Identities=13% Similarity=0.220 Sum_probs=23.8
Q ss_pred eeEEEEEcCeEEEEEEcCCHHHHHHHHHHHHhh
Q 037014 3 YAQSISFCGKIIETTVTSTTSVAENWLLKIRSL 35 (198)
Q Consensus 3 ~~~~v~f~~~~i~~~v~~~~~~~~~~i~~~~~~ 35 (198)
|.|.+... ...+.--++++++.++|++.+..+
T Consensus 73 ~~Fki~~~-~~~y~f~A~s~e~~~~Wl~al~~A 104 (112)
T 2coc_A 73 HVWKLQWA-KQSWYLSASSAELQQQWLETLSTA 104 (112)
T ss_dssp EEEEEEET-TEEEEEEESSHHHHHHHHHHHHHH
T ss_pred CEEEEecC-CeEEEEEcCCHHHHHHHHHHHHHH
Confidence 45666634 445666788999999999999875
No 61
>2od5_A Hypothetical protein; metagenomics, structural genomics, joint center for structur genomics, JCSG, protein structure initiative; HET: 1PE; 1.79A {Uncultured marine organism} SCOP: a.4.5.70
Probab=25.58 E-value=42 Score=22.42 Aligned_cols=24 Identities=25% Similarity=0.314 Sum_probs=19.5
Q ss_pred CcccHHHHHhh-cCCCeEEEEEeec
Q 037014 81 DCIPLSIKNFL-SDPNVVFVGIEVE 104 (198)
Q Consensus 81 ~~~~~~L~~lL-~d~~i~kvG~~~~ 104 (198)
+..|+.|.++| .|++|+|||+--+
T Consensus 45 gttpqqlgNvLskDkdIvkvgtvkr 69 (116)
T 2od5_A 45 GTTSQQLGNVLSKDKDIVKVGYIKR 69 (116)
T ss_dssp CCCHHHHHHHHHHCTTEEEEEEEEE
T ss_pred CCCHHHHhhHHhcccceeeEEEeec
Confidence 45788899998 6899999998643
No 62
>1v89_A Hypothetical protein KIAA0053; pleckstrin homology domain, phosphatidylinositol binding, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=25.12 E-value=93 Score=20.02 Aligned_cols=25 Identities=20% Similarity=0.363 Sum_probs=19.3
Q ss_pred CeEEEEEEcCCHHHHHHHHHHHHhh
Q 037014 11 GKIIETTVTSTTSVAENWLLKIRSL 35 (198)
Q Consensus 11 ~~~i~~~v~~~~~~~~~~i~~~~~~ 35 (198)
+.......++++++.++|++.+...
T Consensus 86 ~~~~~~l~a~s~~e~~~Wi~al~~~ 110 (118)
T 1v89_A 86 GQDSYVLMASSQAEMEEWVKFLRRV 110 (118)
T ss_dssp SCCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCHHHHHHHHHHHHHH
Confidence 4444455678999999999999875
No 63
>2pa8_L DNA-directed RNA polymerase subunit L; ferredoxin-like Fe-S binding motif, platform for RNA polymer assembly, transferase; 1.76A {Sulfolobus solfataricus} PDB: 2pmz_L 3hkz_L 2waq_L 2wb1_L 2y0s_L
Probab=25.09 E-value=45 Score=21.93 Aligned_cols=32 Identities=19% Similarity=0.062 Sum_probs=21.1
Q ss_pred EEEEEccccCc-ccHHHH-HhhcCCCeEEEEEee
Q 037014 72 CLILQLLYMDC-IPLSIK-NFLSDPNVVFVGIEV 103 (198)
Q Consensus 72 ~~i~~l~~~~~-~~~~L~-~lL~d~~i~kvG~~~ 103 (198)
+..|.+...+. +-..|+ .++.||+|.++||.+
T Consensus 12 ~~~f~i~~EDHTLgN~Lr~~L~~~p~V~fagY~v 45 (92)
T 2pa8_L 12 YLELEIEGEDHTLGNLIAGTLRRISGVSFASYYQ 45 (92)
T ss_dssp EEEEEEETCCHHHHHHHHHHHHTSTTEEEEEEEC
T ss_pred eEEEEEecCchhHHHHHHHHHhcCCCeeEEEeec
Confidence 45556654443 334454 457999999999987
No 64
>1v5u_A SBF1, SET binding factor 1; MTMR5, the pleckstrin homology domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.55.1.1
Probab=22.52 E-value=98 Score=19.96 Aligned_cols=32 Identities=13% Similarity=0.212 Sum_probs=23.3
Q ss_pred eeEEEEEcCeEEEEEEcCCHHHHHHHHHHHHhh
Q 037014 3 YAQSISFCGKIIETTVTSTTSVAENWLLKIRSL 35 (198)
Q Consensus 3 ~~~~v~f~~~~i~~~v~~~~~~~~~~i~~~~~~ 35 (198)
+.+.|...+.. ....+.++++..+|++.+...
T Consensus 78 ~~F~i~~~~r~-~~l~a~s~~e~~~Wi~al~~~ 109 (117)
T 1v5u_A 78 AFFDVKTTRRV-YNFCAQDVPSAQQWVDRIQSC 109 (117)
T ss_dssp TCEEEEESSCE-EEEECSSHHHHHHHHHHHHTT
T ss_pred eEEEEECCCce-EEEECCCHHHHHHHHHHHHHH
Confidence 45666555443 334688999999999999874
No 65
>1btk_A Bruton'S tyrosine kinase; transferase, PH domain, BTK motif, zinc binding, X-linked agammaglobulinemia, tyrosine-protein kinase; 1.60A {Homo sapiens} SCOP: b.55.1.1 PDB: 1b55_A* 2z0p_A* 1bwn_A*
Probab=22.47 E-value=1.2e+02 Score=21.70 Aligned_cols=34 Identities=9% Similarity=0.345 Sum_probs=25.3
Q ss_pred eeEEEEEcCeEEEEEEcCCHHHHHHHHHHHHhhcc
Q 037014 3 YAQSISFCGKIIETTVTSTTSVAENWLLKIRSLHS 37 (198)
Q Consensus 3 ~~~~v~f~~~~i~~~v~~~~~~~~~~i~~~~~~~~ 37 (198)
|.+.|......++ ..++++++.++||+.|.....
T Consensus 99 ~~F~I~t~~rt~y-l~A~s~~E~~eWi~aI~~~i~ 132 (169)
T 1btk_A 99 YPFQVVYDEGPLY-VFSPTEELRKRWIHQLKNVIR 132 (169)
T ss_dssp EEEEEEETTCCEE-EEESCHHHHHHHHHHHHHHHT
T ss_pred ccEEEEeCCceEE-EEcCCHHHHHHHHHHHHHHHH
Confidence 6677766665444 457899999999999997643
No 66
>2da0_A 130-kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1 GTPase-activating protein...; PH domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.39 E-value=1.3e+02 Score=19.51 Aligned_cols=31 Identities=3% Similarity=-0.053 Sum_probs=22.3
Q ss_pred eEEEEEcCeEEEEEEcCCHHHHHHHHHHHHhh
Q 037014 4 AQSISFCGKIIETTVTSTTSVAENWLLKIRSL 35 (198)
Q Consensus 4 ~~~v~f~~~~i~~~v~~~~~~~~~~i~~~~~~ 35 (198)
.+.|...+ ......++++++..+|++.+...
T Consensus 69 ~F~I~~~~-r~~~l~a~s~~e~~~Wi~al~~~ 99 (114)
T 2da0_A 69 SFDLISHN-RTYHFQAEDEQDYVAWISVLTNS 99 (114)
T ss_dssp CEEEEETT-EEEEEECSSHHHHHHHHHHHHHH
T ss_pred EEEEEcCC-cEEEEEcCCHHHHHHHHHHHHHH
Confidence 45565443 44455788999999999998864
No 67
>1twf_K B13.6, DNA-directed RNA polymerase II 13.6 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: d.74.3.2 PDB: 1i3q_K 1i6h_K 1k83_K* 1nik_K 1nt9_K 1pqv_K 1r5u_K 1r9s_K* 1r9t_K* 1sfo_K* 1twa_K* 1twc_K* 1i50_K* 1twg_K* 1twh_K* 1wcm_K 1y1v_K 1y1w_K 1y1y_K 1y77_K* ...
Probab=22.27 E-value=1.6e+02 Score=20.22 Aligned_cols=45 Identities=18% Similarity=0.255 Sum_probs=28.8
Q ss_pred CceeEEEeeeCCeEEEEEccccCc-ccHHHH-HhhcCCCeEEEEEee
Q 037014 59 GKIATLQLCVDTKCLILQLLYMDC-IPLSIK-NFLSDPNVVFVGIEV 103 (198)
Q Consensus 59 ~~~~liQla~~~~~~i~~l~~~~~-~~~~L~-~lL~d~~i~kvG~~~ 103 (198)
.++.+.-....+.+..|.+...++ +-..|+ .++.||+|.++||.+
T Consensus 17 ~K~~~~~~~k~~n~~~f~i~~EDHTLgNlLr~~Llk~p~V~fAgY~v 63 (120)
T 1twf_K 17 SKLKIDPDTKAPNAVVITFEKEDHTLGNLIRAELLNDRKVLFAAYKV 63 (120)
T ss_dssp CSCCEEECSSSTTEEEEEEESCCHHHHHHHHHHHTTCTTEEEEEEEC
T ss_pred ceEEEEeccCCCCeEEEEEeCCCchHHHHHHHHHhhCCCeeEEeeec
Confidence 445544444445577777765443 334454 457999999999987
No 68
>1v5p_A Pleckstrin homology domain-containing, family A; TAPP2, the pleckstrin homology domain, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1
Probab=21.80 E-value=1.2e+02 Score=20.56 Aligned_cols=31 Identities=6% Similarity=0.022 Sum_probs=22.6
Q ss_pred eEEEEEcCeEEEEEEcCCHHHHHHHHHHHHhh
Q 037014 4 AQSISFCGKIIETTVTSTTSVAENWLLKIRSL 35 (198)
Q Consensus 4 ~~~v~f~~~~i~~~v~~~~~~~~~~i~~~~~~ 35 (198)
.+.+. .+...+...++++++.++||+.+...
T Consensus 88 ~F~i~-t~~r~y~l~A~s~~e~~~Wi~al~~a 118 (126)
T 1v5p_A 88 CFVIN-ALSQRYFLQANDQKDLKDWVEALNQA 118 (126)
T ss_dssp EEEEE-CSSCEEEEECSSHHHHHHHHHHHHHT
T ss_pred EEEEE-CCCEEEEEECCCHHHHHHHHHHHHHH
Confidence 34343 34455666788999999999999875
No 69
>2d9x_A Oxysterol binding protein-related protein 11; PH domain, OSBP-related protein 11, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.77 E-value=52 Score=21.82 Aligned_cols=33 Identities=3% Similarity=0.094 Sum_probs=22.9
Q ss_pred eeEEEEEcCeEEEEEEcCCHHHHHHHHHHHHhh
Q 037014 3 YAQSISFCGKIIETTVTSTTSVAENWLLKIRSL 35 (198)
Q Consensus 3 ~~~~v~f~~~~i~~~v~~~~~~~~~~i~~~~~~ 35 (198)
+.+.|...+.......++++++.++|++.+...
T Consensus 70 ~~F~i~~~~~r~~~l~a~s~~e~~~Wi~al~~~ 102 (120)
T 2d9x_A 70 HTFTVNAASGEQYKLRATDAKERQHWVSRLQIC 102 (120)
T ss_dssp SCEEECCSSSCCEEECCSSHHHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCEEEEECCCHHHHHHHHHHHHHH
Confidence 345555554344444678999999999999864
No 70
>4hec_A Putative uncharacterized protein; ssgcid, structural genomics, SEA structural genomics center for infectious disease, unknown; 1.80A {Mycobacterium tuberculosis}
Probab=20.28 E-value=2.4e+02 Score=21.04 Aligned_cols=87 Identities=14% Similarity=-0.066 Sum_probs=44.9
Q ss_pred HHHHHhhcC---CCeEEEEEeecchHHHHhhhcCCccCceeehHHHHHHhCCCCCCCCchHHHHHHHHcCCcCCCCCcee
Q 037014 85 LSIKNFLSD---PNVVFVGIEVEEIMSKLKNEYGLCIKKKIDVRTLAKLHFPISCLGKPGLKVLAYQLLRLRPWKPKKVC 161 (198)
Q Consensus 85 ~~L~~lL~d---~~i~kvG~~~~~D~~~L~~~~gi~~~~~~Dl~~l~~~~l~~~~~~~~~L~~l~~~~l~~~l~K~~~~~ 161 (198)
..|.+||.+ +.+.-+++....|...|..-+|-- ..+ -.+.| .....|..+++..=...++...
T Consensus 93 ~~L~~FL~~~~~~~~eLwa~~~~yD~~~L~ql~g~m-------~~l---P~~~p-~~~~dlr~~~~~~g~~~lp~~~--- 158 (190)
T 4hec_A 93 LDLEEFLRIDGTDSIELWAWVGAYDHVALCQLWGPM-------TAL---PPTVP-RFTRELRQLWEDRGCPRMPPRP--- 158 (190)
T ss_dssp HHHHHHTTTTSSCEEEEEESSCHHHHHHHHTTTSSG-------GGS---CTTSC-SSCEEHHHHHHHTTCCCCCC-----
T ss_pred HHHHHHHHhcCCCCCEEEEecccccHHHHHHHhccc-------ccC---Ccccc-hhhHHHHHHHHHcCCCCCCCCC---
Confidence 457777753 345567777777887776555521 000 00011 1234566665542112233211
Q ss_pred ccCCCCCCCCHHHHHHHHHhHHHHHHHHHHHhccc
Q 037014 162 MNNLESGFLDTELIKFACIDAYVSCAIGTKLLLEE 196 (198)
Q Consensus 162 ~s~W~~~~L~~~Qi~YAA~Da~~~~~l~~~L~~~~ 196 (198)
. --+-|-.||-..+..|+.+...+
T Consensus 159 -~----------~~H~AL~DAR~n~~~~~~~~~~~ 182 (190)
T 4hec_A 159 -R----------DVHDALVDARDQLRRFRLITSTD 182 (190)
T ss_dssp --------------CCHHHHHHHHHHHHHHHHC--
T ss_pred -C----------CCcCcHHHHHHHHHHHHHHhCcc
Confidence 1 12558889999999998887654
Done!