Query 037016
Match_columns 70
No_of_seqs 125 out of 1071
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 12:48:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037016.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037016hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1egw_A MADS box transcription 100.0 2.5E-36 8.6E-41 181.0 2.6 68 2-69 1-68 (77)
2 3p57_A Myocyte-specific enhanc 100.0 7.8E-36 2.7E-40 183.4 2.3 68 2-69 1-68 (90)
3 1mnm_A Protein (MCM1 transcrip 100.0 8.9E-36 3E-40 186.1 2.2 69 1-69 16-84 (100)
4 1hbx_A SRF, serum response fac 100.0 7.8E-36 2.7E-40 184.0 1.9 69 1-69 10-78 (92)
5 1k6o_B SRF, serum response fac 100.0 3.7E-35 1.3E-39 184.1 2.1 68 1-68 9-76 (103)
6 1r9c_A Glutathione transferase 46.0 29 0.001 19.6 3.7 27 44-70 106-132 (139)
7 1m2d_A [2Fe-2S] ferredoxin; th 37.3 15 0.00053 21.4 1.5 23 45-68 65-88 (110)
8 2vlg_A Sporulation kinase A; h 35.8 41 0.0014 18.9 3.3 26 41-67 8-33 (111)
9 3f1p_A Endothelial PAS domain- 33.5 55 0.0019 17.1 3.6 25 42-67 9-33 (117)
10 3j21_V 50S ribosomal protein L 33.1 26 0.0009 19.5 2.0 28 34-61 5-36 (66)
11 2phn_A F420-0:gamma-glutamyl l 31.1 5.8 0.0002 27.5 -1.3 27 34-60 138-164 (254)
12 3fg8_A Uncharacterized protein 30.9 38 0.0013 18.3 2.5 30 36-66 16-45 (118)
13 4hi4_A Aerotaxis transducer AE 29.9 31 0.0011 18.8 2.0 31 36-67 9-39 (121)
14 3f1p_B ARYL hydrocarbon recept 29.4 68 0.0023 16.9 3.9 30 37-67 7-36 (121)
15 3nrf_A APAG protein; structura 29.3 6.9 0.00024 24.0 -1.0 44 11-59 21-64 (106)
16 2ky6_A Mediator of RNA polymer 28.8 41 0.0014 22.0 2.6 21 36-56 116-136 (166)
17 1nki_A Probable fosfomycin res 27.3 62 0.0021 18.1 3.0 25 44-68 98-122 (135)
18 1npb_A Fosfomycin-resistance p 26.9 52 0.0018 18.6 2.6 26 44-69 101-126 (141)
19 3izc_Z 60S ribosomal protein R 23.0 52 0.0018 21.3 2.2 28 34-61 4-35 (155)
20 2zkr_u 60S ribosomal protein L 22.6 48 0.0016 21.5 2.0 28 34-61 4-35 (157)
21 4a17_T RPL24, 60S ribosomal pr 22.5 51 0.0018 21.4 2.2 27 34-60 6-36 (158)
22 3rty_A Period circadian protei 22.2 78 0.0027 22.0 3.2 26 41-67 2-28 (339)
23 1kaf_A Transcription regulator 22.1 38 0.0013 20.7 1.4 23 6-28 23-46 (108)
24 3iz5_Z 60S ribosomal protein L 21.8 56 0.0019 21.3 2.2 28 34-61 6-37 (162)
25 2lx9_A Ferrous iron transport 21.7 1.1E+02 0.0039 16.8 3.7 33 25-57 19-51 (83)
26 3mjq_A Uncharacterized protein 21.6 94 0.0032 15.9 2.9 28 38-66 5-32 (126)
27 2dm0_A Tyrosine-protein kinase 21.5 59 0.002 19.0 2.2 37 33-69 52-99 (125)
28 1p0z_A Sensor kinase CITA; tra 20.4 1.1E+02 0.0037 17.6 3.2 33 27-60 36-68 (131)
29 1vq8_U 50S ribosomal protein L 20.4 63 0.0022 17.9 2.0 28 34-61 4-35 (66)
30 4f3l_A Mclock, circadian locom 20.1 1.1E+02 0.0037 20.9 3.6 30 37-67 91-120 (361)
31 3uh9_A Metallothiol transferas 20.0 1E+02 0.0034 17.3 3.0 24 43-66 102-125 (145)
No 1
>1egw_A MADS box transcription enhancer factor 2, polypeptide A; MADS-box transcription factor, DNA/protein complex, transcription/DNA; HET: DNA; 1.50A {Homo sapiens} SCOP: d.88.1.1 PDB: 1c7u_A 3mu6_A*
Probab=100.00 E-value=2.5e-36 Score=180.97 Aligned_cols=68 Identities=50% Similarity=0.769 Sum_probs=67.0
Q ss_pred CccceeeEEccCCCCccchhhhhhchHHHHhhhhhccccccEEEEEEcCCCceEEeeCCcHHHhhhcC
Q 037016 2 GRGKIVIQKINNSTSRQVTFSKRRKGLIKKAKELSILCDAEVGLAIFSSTAKLYEFANTRLLCSLTTV 69 (70)
Q Consensus 2 gR~ki~ik~I~~~~~R~~tf~KR~~gL~KKa~Els~Lc~~~v~~iv~~~~g~~~~~~s~~~~~vl~~~ 69 (70)
||+||+|++|+|+.+|++||+||++||||||+|||+||||+||||||+++|++|+|+|++++++|++|
T Consensus 1 GR~Ki~ik~I~n~~~R~vTfsKRr~GL~KKA~ELsvLCdaeV~livfs~~gk~~~~~s~~~~~il~ry 68 (77)
T 1egw_A 1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKY 68 (77)
T ss_dssp CCSCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCEEEEESSCHHHHHHHH
T ss_pred CCceeeeEEecCchHHHHHHHHhHHHHHHHHHHHhcccCCeEEEEEECCCCCEeeCCCCCHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999987
No 2
>3p57_A Myocyte-specific enhancer factor 2A; protein-DNA complex, transcription factor, transcriptional activation, zinc finger; HET: DNA; 2.19A {Homo sapiens} PDB: 3kov_A* 1tqe_P 1n6j_A
Probab=100.00 E-value=7.8e-36 Score=183.39 Aligned_cols=68 Identities=50% Similarity=0.769 Sum_probs=67.1
Q ss_pred CccceeeEEccCCCCccchhhhhhchHHHHhhhhhccccccEEEEEEcCCCceEEeeCCcHHHhhhcC
Q 037016 2 GRGKIVIQKINNSTSRQVTFSKRRKGLIKKAKELSILCDAEVGLAIFSSTAKLYEFANTRLLCSLTTV 69 (70)
Q Consensus 2 gR~ki~ik~I~~~~~R~~tf~KR~~gL~KKa~Els~Lc~~~v~~iv~~~~g~~~~~~s~~~~~vl~~~ 69 (70)
||+||+|++|+|+.+|++||+||++||||||+|||+||||+||+|||+|+|++|+|+||++++||++|
T Consensus 1 GR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valiifs~~gk~~~f~s~~~~~il~rY 68 (90)
T 3p57_A 1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKY 68 (90)
T ss_dssp CCSCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEESSCHHHHHHHH
T ss_pred CCCcceeEEecCchHHHHHHHHhhhhHHHHHHHHHhccCCceEEEEECCCCCEEEeCCCCHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999987
No 3
>1mnm_A Protein (MCM1 transcriptional regulator); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: d.88.1.1
Probab=100.00 E-value=8.9e-36 Score=186.08 Aligned_cols=69 Identities=42% Similarity=0.555 Sum_probs=67.6
Q ss_pred CCccceeeEEccCCCCccchhhhhhchHHHHhhhhhccccccEEEEEEcCCCceEEeeCCcHHHhhhcC
Q 037016 1 MGRGKIVIQKINNSTSRQVTFSKRRKGLIKKAKELSILCDAEVGLAIFSSTAKLYEFANTRLLCSLTTV 69 (70)
Q Consensus 1 mgR~ki~ik~I~~~~~R~~tf~KR~~gL~KKa~Els~Lc~~~v~~iv~~~~g~~~~~~s~~~~~vl~~~ 69 (70)
|||+||+|++|+|+.+|++||+||++||||||+|||+||||+||||||+++|++|+|+||++++||++|
T Consensus 16 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~f~sps~~~il~r~ 84 (100)
T 1mnm_A 16 KERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFSTPKFEPIVTQQ 84 (100)
T ss_dssp CCCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEECTTTTHHHHSH
T ss_pred CCccceeeEEecCcchhhhhhhHhhhhHHHHHHHHHHhcCCcEEEEEecCCCCcceecCCCHHHHHHHh
Confidence 899999999999999999999999999999999999999999999999999999999999999999875
No 4
>1hbx_A SRF, serum response factor; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: d.88.1.1 PDB: 1srs_A*
Probab=100.00 E-value=7.8e-36 Score=184.02 Aligned_cols=69 Identities=42% Similarity=0.550 Sum_probs=67.4
Q ss_pred CCccceeeEEccCCCCccchhhhhhchHHHHhhhhhccccccEEEEEEcCCCceEEeeCCcHHHhhhcC
Q 037016 1 MGRGKIVIQKINNSTSRQVTFSKRRKGLIKKAKELSILCDAEVGLAIFSSTAKLYEFANTRLLCSLTTV 69 (70)
Q Consensus 1 mgR~ki~ik~I~~~~~R~~tf~KR~~gL~KKa~Els~Lc~~~v~~iv~~~~g~~~~~~s~~~~~vl~~~ 69 (70)
|||+||+|++|+|+.+|++||+||+.||||||+|||+||||+||||||+++|++|+|+||+++++|+.+
T Consensus 10 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~V~livfs~~gk~~~f~s~~~~~~i~~~ 78 (92)
T 1hbx_A 10 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRKLQPMITSE 78 (92)
T ss_dssp CCSCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECTTSCEEEEECGGGGGGTSSH
T ss_pred CCcceEEEEEecChhHHHHHHHHhhhhHHHHHHHHHhhcCCceEEEEECCCCCEEEecCCCHHHHHhhh
Confidence 999999999999999999999999999999999999999999999999999999999999999999864
No 5
>1k6o_B SRF, serum response factor; protein/DNA complex, transcription factor, combinatorial gene regulation, ETS proteins, MADS-box proteins; 3.19A {Homo sapiens} SCOP: d.88.1.1
Probab=100.00 E-value=3.7e-35 Score=184.09 Aligned_cols=68 Identities=43% Similarity=0.567 Sum_probs=66.8
Q ss_pred CCccceeeEEccCCCCccchhhhhhchHHHHhhhhhccccccEEEEEEcCCCceEEeeCCcHHHhhhc
Q 037016 1 MGRGKIVIQKINNSTSRQVTFSKRRKGLIKKAKELSILCDAEVGLAIFSSTAKLYEFANTRLLCSLTT 68 (70)
Q Consensus 1 mgR~ki~ik~I~~~~~R~~tf~KR~~gL~KKa~Els~Lc~~~v~~iv~~~~g~~~~~~s~~~~~vl~~ 68 (70)
|||+||+|++|+|+.+|++||+||+.||||||+|||+||||+||||||+++|++|+|+||+++++|+.
T Consensus 9 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~f~s~~~~~vi~~ 76 (103)
T 1k6o_B 9 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRKLQPMITS 76 (103)
T ss_dssp CCSCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSCEEEEECGGGGGGTSS
T ss_pred CCcceeEEEEecCchHHHHhHhHhhHhHHHHHHHHHhhhCCceEEEEEeCCCCeeeecCccHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999975
No 6
>1r9c_A Glutathione transferase; fosfomycin resistance protein, Mn binding, antibiotic resist transferase; 1.83A {Mesorhizobium loti} SCOP: d.32.1.2
Probab=45.96 E-value=29 Score=19.63 Aligned_cols=27 Identities=11% Similarity=0.283 Sum_probs=19.9
Q ss_pred EEEEEcCCCceEEeeCCcHHHhhhcCC
Q 037016 44 GLAIFSSTAKLYEFANTRLLCSLTTVP 70 (70)
Q Consensus 44 ~~iv~~~~g~~~~~~s~~~~~vl~~~p 70 (70)
.+.+.+|+|....+.+....+-|+.++
T Consensus 106 ~~~~~DPdG~~iel~~~~~~~~l~~~~ 132 (139)
T 1r9c_A 106 SIYFYDDDNHMFELHTGTLTERLARKA 132 (139)
T ss_dssp EEEEECTTSCEEEEECCCHHHHHHC--
T ss_pred EEEEECCCCCEEEEEeCChhHHHHHHH
Confidence 456779999999999977766666553
No 7
>1m2d_A [2Fe-2S] ferredoxin; thioredoxin-like fold, [2Fe-2S] cluster, Cys59Ser variant, electron transport; 1.05A {Aquifex aeolicus} SCOP: c.47.1.11 PDB: 1m2a_A 1f37_A 1m2b_A
Probab=37.29 E-value=15 Score=21.36 Aligned_cols=23 Identities=4% Similarity=0.125 Sum_probs=15.9
Q ss_pred EEEEcCCCceEEeeCC-cHHHhhhc
Q 037016 45 LAIFSSTAKLYEFANT-RLLCSLTT 68 (70)
Q Consensus 45 ~iv~~~~g~~~~~~s~-~~~~vl~~ 68 (70)
++|+ |+|.+|..-+| +++++|+.
T Consensus 65 v~V~-P~~~~y~~vt~e~v~~il~~ 88 (110)
T 1m2d_A 65 VVVY-PDGVWYGQVKPEDVDEIVEK 88 (110)
T ss_dssp EEEE-TTTEEECSCCGGGHHHHHHH
T ss_pred EEEE-eCCEEEecCCHHHHHHHHHH
Confidence 4445 77877777776 77777764
No 8
>2vlg_A Sporulation kinase A; histidine kinase, two-component regulatory system, two-component signal transduction, transferase, phosphorylation, SCOD; 1.7A {Bacillus subtilis}
Probab=35.77 E-value=41 Score=18.91 Aligned_cols=26 Identities=12% Similarity=0.059 Sum_probs=18.0
Q ss_pred ccEEEEEEcCCCceEEeeCCcHHHhhh
Q 037016 41 AEVGLAIFSSTAKLYEFANTRLLCSLT 67 (70)
Q Consensus 41 ~~v~~iv~~~~g~~~~~~s~~~~~vl~ 67 (70)
+.-++++.+++|. +.|.+|++..++-
T Consensus 8 ~~d~i~v~d~~G~-i~yvn~~~~~~lG 33 (111)
T 2vlg_A 8 KTDIHAVLASNGR-IIYISANSKLHLG 33 (111)
T ss_dssp -CCEEEEECTTSB-EEEECTTHHHHHS
T ss_pred CCCEEEEEcCCCe-EEEEChHHHHHhC
Confidence 3445677777775 5699998887764
No 9
>3f1p_A Endothelial PAS domain-containing protein 1; PAS domain, heterodimer, internal cavity, activator, angiogenesis, congenital erythrocytosis; 1.17A {Homo sapiens} SCOP: d.110.3.7 PDB: 3f1o_A* 3f1n_A 3h7w_A* 3h82_A* 1p97_A 2a24_A 4h6j_A
Probab=33.48 E-value=55 Score=17.12 Aligned_cols=25 Identities=16% Similarity=0.231 Sum_probs=17.1
Q ss_pred cEEEEEEcCCCceEEeeCCcHHHhhh
Q 037016 42 EVGLAIFSSTAKLYEFANTRLLCSLT 67 (70)
Q Consensus 42 ~v~~iv~~~~g~~~~~~s~~~~~vl~ 67 (70)
..++++.+++|. +.|.+|.+..++-
T Consensus 9 ~~~i~~~d~~g~-i~~~n~~~~~~~G 33 (117)
T 3f1p_A 9 KTFLSEHSMDMK-FTYCDDRITELIG 33 (117)
T ss_dssp GEEEEEECTTCB-EEEECTHHHHHHC
T ss_pred ccEEEEECCCce-EEEECcChhhhhC
Confidence 456677788776 4588887776653
No 10
>3j21_V 50S ribosomal protein L24E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=33.09 E-value=26 Score=19.52 Aligned_cols=28 Identities=11% Similarity=0.331 Sum_probs=21.2
Q ss_pred hhhccccccE----EEEEEcCCCceEEeeCCc
Q 037016 34 ELSILCDAEV----GLAIFSSTAKLYEFANTR 61 (70)
Q Consensus 34 Els~Lc~~~v----~~iv~~~~g~~~~~~s~~ 61 (70)
|+|..||.+| ....+-.||+++.|++..
T Consensus 5 ~~C~Fcg~~IyPG~G~~~Vr~Dgkvf~FcssK 36 (66)
T 3j21_V 5 NVCSYCGKPFEPGTGKMYVRNDGRVLFFCSRK 36 (66)
T ss_dssp CBCTTTCSBCCTTCCEEEECSSSCEEEESSHH
T ss_pred eEecCcCCcccCCCCeEEEecCCcEEEEECHH
Confidence 5677788776 455566789999999973
No 11
>2phn_A F420-0:gamma-glutamyl ligase; coenzyme F420 biosynthesis, amide BON enzyme, metal dependent, NEW fold, GDP binding, MCSG; HET: GDP; 1.35A {Archaeoglobus fulgidus dsm 4304} SCOP: d.340.1.1 PDB: 2g9i_A
Probab=31.13 E-value=5.8 Score=27.51 Aligned_cols=27 Identities=15% Similarity=0.244 Sum_probs=21.7
Q ss_pred hhhccccccEEEEEEcCCCceEEeeCC
Q 037016 34 ELSILCDAEVGLAIFSSTAKLYEFANT 60 (70)
Q Consensus 34 Els~Lc~~~v~~iv~~~~g~~~~~~s~ 60 (70)
+|.-.+|++|++||++++|+++..+.+
T Consensus 138 ~l~~~~G~~v~ViI~Dt~gr~~r~g~~ 164 (254)
T 2phn_A 138 RILELTGKRVGVIITDTNGRCFRRGVV 164 (254)
T ss_dssp HHHHHHSCCCEEEEEEEEEETTEEEEE
T ss_pred HHHHHHCCCEEEEEEcCCCchhhccCc
Confidence 355678999999999998887776654
No 12
>3fg8_A Uncharacterized protein RHA05790; PAS domain, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; HET: 3PB; 1.80A {Rhodococcus SP}
Probab=30.87 E-value=38 Score=18.28 Aligned_cols=30 Identities=10% Similarity=0.336 Sum_probs=21.4
Q ss_pred hccccccEEEEEEcCCCceEEeeCCcHHHhh
Q 037016 36 SILCDAEVGLAIFSSTAKLYEFANTRLLCSL 66 (70)
Q Consensus 36 s~Lc~~~v~~iv~~~~g~~~~~~s~~~~~vl 66 (70)
+++-.+..++++++++|.+. |..+....++
T Consensus 16 ~il~~~~~~i~~~D~~g~i~-~~N~a~~~l~ 45 (118)
T 3fg8_A 16 NLYFQGGLGFMALDEDLRII-YVNSGCLRHV 45 (118)
T ss_dssp CSSSCTTCEEEEECTTCBEE-EECHHHHHHH
T ss_pred HHHhhCCceEEEECCCCeEE-EECHHHHHHh
Confidence 56777888999999888765 5565555444
No 13
>4hi4_A Aerotaxis transducer AER2; PAS domain, diatomic GAS sensor, signaling protein; HET: HEM GOL; 2.30A {Pseudomonas aeruginosa}
Probab=29.93 E-value=31 Score=18.80 Aligned_cols=31 Identities=16% Similarity=0.186 Sum_probs=22.3
Q ss_pred hccccccEEEEEEcCCCceEEeeCCcHHHhhh
Q 037016 36 SILCDAEVGLAIFSSTAKLYEFANTRLLCSLT 67 (70)
Q Consensus 36 s~Lc~~~v~~iv~~~~g~~~~~~s~~~~~vl~ 67 (70)
++|-.+..++++++.+|++. |..+.+..++.
T Consensus 9 ~il~~~~~gviv~D~~g~I~-~~N~a~~~llg 39 (121)
T 4hi4_A 9 SALDNVSANVMIADNDLNII-YMNRTVSEMLG 39 (121)
T ss_dssp HHHTTSSSEEEEEETTCBEE-EECHHHHHHHH
T ss_pred HHHhcCCccEEEEcCCCeEE-EecHHHHHHHH
Confidence 35566678999999988765 66676666653
No 14
>3f1p_B ARYL hydrocarbon receptor nuclear translocator; PAS domain, heterodimer, internal cavity, activator, angiogenesis, congenital erythrocytosis; 1.17A {Homo sapiens} SCOP: d.110.3.0 PDB: 3f1o_B* 3f1n_B 3h7w_B* 3h82_B* 1x0o_A 2hv1_A 4h6j_B 2b02_A* 2k7s_A 2a24_B
Probab=29.43 E-value=68 Score=16.91 Aligned_cols=30 Identities=10% Similarity=0.244 Sum_probs=20.3
Q ss_pred ccccccEEEEEEcCCCceEEeeCCcHHHhhh
Q 037016 37 ILCDAEVGLAIFSSTAKLYEFANTRLLCSLT 67 (70)
Q Consensus 37 ~Lc~~~v~~iv~~~~g~~~~~~s~~~~~vl~ 67 (70)
++-.+.-.+++.+++|.. .|.+|++..++-
T Consensus 7 l~e~~~d~i~~~d~~g~i-~~~n~~~~~~~G 36 (121)
T 3f1p_B 7 NVCQPTRFISRHNIEGIF-TFVDHRCVATVG 36 (121)
T ss_dssp -CCCCCEEEEEECTTSBE-EEECTTHHHHHS
T ss_pred eecCCCceEEEECCCceE-EEECcchhhhhC
Confidence 345566677778887765 588887777653
No 15
>3nrf_A APAG protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; 1.50A {Pseudomonas aeruginosa} PDB: 3sb3_A
Probab=29.31 E-value=6.9 Score=24.03 Aligned_cols=44 Identities=16% Similarity=0.168 Sum_probs=33.6
Q ss_pred ccCCCCccchhhhhhchHHHHhhhhhccccccEEEEEEcCCCceEEeeC
Q 037016 11 INNSTSRQVTFSKRRKGLIKKAKELSILCDAEVGLAIFSSTAKLYEFAN 59 (70)
Q Consensus 11 I~~~~~R~~tf~KR~~gL~KKa~Els~Lc~~~v~~iv~~~~g~~~~~~s 59 (70)
+.++...+.||.-.-..|.++.-+|+.+ |++.|+++|+-+-.-+
T Consensus 21 ~~~k~~ytktFdV~vaNl~~~~idLsk~-----C~~a~~~~gkef~ldT 64 (106)
T 3nrf_A 21 VGDKHFRTQAFKVRLVNAAKSEISLKNS-----CLVAQSAAGQSFRLDT 64 (106)
T ss_dssp ETTEEEEEEEEEEEEECCSSSCEECTTC-----EEEEEETTSCEEEEEE
T ss_pred eCCeeEEEEEEEEEEecCCCCccccchh-----hheeeCcCCCEEEecc
Confidence 3445556677777788888999999865 7999999998776554
No 16
>2ky6_A Mediator of RNA polymerase II transcription subun; ARC, VP16 binding domain, acid, transcription REGU; NMR {Homo sapiens} PDB: 2l23_A 2l6u_A 2xnf_A
Probab=28.76 E-value=41 Score=22.04 Aligned_cols=21 Identities=24% Similarity=0.553 Sum_probs=16.2
Q ss_pred hccccccEEEEEEcCCCceEE
Q 037016 36 SILCDAEVGLAIFSSTAKLYE 56 (70)
Q Consensus 36 s~Lc~~~v~~iv~~~~g~~~~ 56 (70)
+.-|+.+|-+++|+++.+.|.
T Consensus 116 ~~~ceiKvLiLlYs~~k~afl 136 (166)
T 2ky6_A 116 TAPCEVRVLMLLYSSKKKIFM 136 (166)
T ss_dssp TCCCSCCEEEEEECTTTCSEE
T ss_pred CCCcceEEEEEEEcCCcceee
Confidence 345888999999999766553
No 17
>1nki_A Probable fosfomycin resistance protein; potassium binding loop, manganese binding, transferase; 0.95A {Pseudomonas aeruginosa} SCOP: d.32.1.2 PDB: 1lqo_A 1lqk_A 1lqp_A 1nnr_A
Probab=27.32 E-value=62 Score=18.05 Aligned_cols=25 Identities=12% Similarity=0.093 Sum_probs=19.0
Q ss_pred EEEEEcCCCceEEeeCCcHHHhhhc
Q 037016 44 GLAIFSSTAKLYEFANTRLLCSLTT 68 (70)
Q Consensus 44 ~~iv~~~~g~~~~~~s~~~~~vl~~ 68 (70)
.+.+.+|+|....+.++...+.+..
T Consensus 98 ~~~~~DPdG~~iel~~~~~~~~~~~ 122 (135)
T 1nki_A 98 SFYFLDPDGHRLEAHVGDLRSRLAA 122 (135)
T ss_dssp EEEEECTTCCEEEEESCCHHHHHHH
T ss_pred EEEEECCCCCEEEEEECCchHHHHH
Confidence 4567899999999998866665543
No 18
>1npb_A Fosfomycin-resistance protein; manganese binding, potassium binding loop, transferase; 2.50A {Serratia marcescens} SCOP: d.32.1.2
Probab=26.93 E-value=52 Score=18.57 Aligned_cols=26 Identities=12% Similarity=0.165 Sum_probs=19.8
Q ss_pred EEEEEcCCCceEEeeCCcHHHhhhcC
Q 037016 44 GLAIFSSTAKLYEFANTRLLCSLTTV 69 (70)
Q Consensus 44 ~~iv~~~~g~~~~~~s~~~~~vl~~~ 69 (70)
.+.+.+|+|....+.++...+-+..|
T Consensus 101 ~~~~~DPdG~~iel~~~~~~~~l~~~ 126 (141)
T 1npb_A 101 SFYFLDPDGHKLELHVGSLAARLAAC 126 (141)
T ss_dssp EEEEECTTCCEEEEEECCHHHHHHHH
T ss_pred EEEEECCCCCEEEEEECchhhhHHHh
Confidence 45677999999999988776666543
No 19
>3izc_Z 60S ribosomal protein RPL24 (L24E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_Z 3o58_V 3o5h_V 3u5e_W 3u5i_W 4b6a_W 1s1i_S 2x7n_D
Probab=22.95 E-value=52 Score=21.26 Aligned_cols=28 Identities=18% Similarity=0.432 Sum_probs=21.5
Q ss_pred hhhccccccEE----EEEEcCCCceEEeeCCc
Q 037016 34 ELSILCDAEVG----LAIFSSTAKLYEFANTR 61 (70)
Q Consensus 34 Els~Lc~~~v~----~iv~~~~g~~~~~~s~~ 61 (70)
|+|..||.+|. .+.+-.||+++.|++..
T Consensus 4 ~~CsFcg~~IyPG~G~~fVr~Dgkvf~FcssK 35 (155)
T 3izc_Z 4 EIDSFSGAKIYPGRGTLFVRGDSKIFRFQNSK 35 (155)
T ss_dssp EECTTTCSEECTTCCEEEECTTCCEEEESSHH
T ss_pred eEecCcCCcccCCCCeEEEecCCCEEEEEcHH
Confidence 67788888774 55556789999999973
No 20
>2zkr_u 60S ribosomal protein L24; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=22.58 E-value=48 Score=21.46 Aligned_cols=28 Identities=21% Similarity=0.447 Sum_probs=21.3
Q ss_pred hhhccccccE----EEEEEcCCCceEEeeCCc
Q 037016 34 ELSILCDAEV----GLAIFSSTAKLYEFANTR 61 (70)
Q Consensus 34 Els~Lc~~~v----~~iv~~~~g~~~~~~s~~ 61 (70)
|+|..||.+| ..+.+-.||++|.|++.-
T Consensus 4 ~~C~Fcg~~IyPG~G~~~Vr~Dgkvf~FcssK 35 (157)
T 2zkr_u 4 ELCSFSGYKIYPGHGRRYARTDGKVFQFLNAK 35 (157)
T ss_dssp CBCTTTCCBCCTTCCEEEECTTSCEEEESSHH
T ss_pred eeecCcCCcccCCCceEEEeeCCcEEEEecHH
Confidence 6788888876 345556789999999973
No 21
>4a17_T RPL24, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_T 4a1c_T 4a1e_T
Probab=22.51 E-value=51 Score=21.36 Aligned_cols=27 Identities=7% Similarity=0.213 Sum_probs=21.1
Q ss_pred hhhccccccEE----EEEEcCCCceEEeeCC
Q 037016 34 ELSILCDAEVG----LAIFSSTAKLYEFANT 60 (70)
Q Consensus 34 Els~Lc~~~v~----~iv~~~~g~~~~~~s~ 60 (70)
|+|..||.+|. .+.+-.||+++.|++.
T Consensus 6 ~~CsFcg~~IyPG~G~~fVr~Dgkvf~Fcss 36 (158)
T 4a17_T 6 GTCSFCEYRIYPGRGQRFIAKDGRGFFFLTK 36 (158)
T ss_dssp EECTTTCCEECTTCCEEEECTTSCEEEESCH
T ss_pred EEecCcCCcccCCCCeEEEeeCCceEEEEcH
Confidence 67888888774 5555678999999997
No 22
>3rty_A Period circadian protein; PAS domain, signalling, timeless, circadian clock protein; 2.85A {Drosophila melanogaster} PDB: 1wa9_A 3gec_A
Probab=22.17 E-value=78 Score=21.98 Aligned_cols=26 Identities=8% Similarity=0.070 Sum_probs=19.8
Q ss_pred ccEEEEEEc-CCCceEEeeCCcHHHhhh
Q 037016 41 AEVGLAIFS-STAKLYEFANTRLLCSLT 67 (70)
Q Consensus 41 ~~v~~iv~~-~~g~~~~~~s~~~~~vl~ 67 (70)
+|-.++|++ ++|++ .|.|+++..+|.
T Consensus 2 ~dgF~~vv~~~~G~i-~yvS~~~~~~LG 28 (339)
T 3rty_A 2 EDSFCCVISMHDGIV-LYTTPSITDVLG 28 (339)
T ss_dssp CSCEEEEEETTTCBE-EEECTTHHHHHC
T ss_pred CcEEEEEEECCCcEE-EEEChHHHHHcC
Confidence 456788888 67754 599999888875
No 23
>1kaf_A Transcription regulatory protein MOTA; escherichia coli, X-RAY crystallography, protein-DNA interactions, structural genomics; 1.60A {Enterobacteria phage T4} SCOP: d.199.1.1
Probab=22.14 E-value=38 Score=20.73 Aligned_cols=23 Identities=22% Similarity=0.424 Sum_probs=18.3
Q ss_pred eeeEEc-cCCCCccchhhhhhchH
Q 037016 6 IVIQKI-NNSTSRQVTFSKRRKGL 28 (70)
Q Consensus 6 i~ik~I-~~~~~R~~tf~KR~~gL 28 (70)
+++|-+ +|.++=.+.|.||-.|+
T Consensus 23 ie~K~~~~~RSN~~i~f~KRt~Gi 46 (108)
T 1kaf_A 23 FVLKKVEIYRSNYLAILEKRTNGI 46 (108)
T ss_dssp CCEEEEEEETTEEEEEEEEEETTE
T ss_pred ceeeeeEeeccceEEeeecccCce
Confidence 566665 67777889999999887
No 24
>3iz5_Z 60S ribosomal protein L24 (L24E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_Z
Probab=21.76 E-value=56 Score=21.27 Aligned_cols=28 Identities=18% Similarity=0.439 Sum_probs=21.5
Q ss_pred hhhccccccEE----EEEEcCCCceEEeeCCc
Q 037016 34 ELSILCDAEVG----LAIFSSTAKLYEFANTR 61 (70)
Q Consensus 34 Els~Lc~~~v~----~iv~~~~g~~~~~~s~~ 61 (70)
|+|..||.+|. .+.+-.||+++.|++.-
T Consensus 6 e~CsFcG~~IyPG~G~~fVr~Dgkvf~FcssK 37 (162)
T 3iz5_Z 6 ELCRFSGQKIYPGKGIRFIRADSQVFLFANSK 37 (162)
T ss_dssp EECTTTCSEECSSCSEEEECTTSCEEEECSHH
T ss_pred EEecCcCCcccCCCCeEEEecCCCEEEEECHH
Confidence 67888888774 45556789999999973
No 25
>2lx9_A Ferrous iron transport protein A; FEOA; NMR {Escherichia coli}
Probab=21.67 E-value=1.1e+02 Score=16.83 Aligned_cols=33 Identities=9% Similarity=0.081 Sum_probs=27.0
Q ss_pred hchHHHHhhhhhccccccEEEEEEcCCCceEEe
Q 037016 25 RKGLIKKAKELSILCDAEVGLAIFSSTAKLYEF 57 (70)
Q Consensus 25 ~~gL~KKa~Els~Lc~~~v~~iv~~~~g~~~~~ 57 (70)
...+.++-.++-+..|++|.++-..|-|.+..+
T Consensus 19 ~~~~~rrL~~mGl~pG~~V~Vi~~ap~ggPi~v 51 (83)
T 2lx9_A 19 SPAYRQKLLSLGMLPGSSFNVVRVAPLGDPIHI 51 (83)
T ss_dssp CHHHHHHHHHSSCCSSSEEEEEEECTTTCCEEE
T ss_pred CHHHHHHHHHCCCCCCCEEEEEEeCCCCCcEEE
Confidence 356788899999999999999999886655444
No 26
>3mjq_A Uncharacterized protein; NESG, structural genomics, PSI-2, protein structure initiati northeast structural genomics consortium; 2.60A {Desulfitobacterium hafniense}
Probab=21.60 E-value=94 Score=15.87 Aligned_cols=28 Identities=29% Similarity=0.275 Sum_probs=18.2
Q ss_pred cccccEEEEEEcCCCceEEeeCCcHHHhh
Q 037016 38 LCDAEVGLAIFSSTAKLYEFANTRLLCSL 66 (70)
Q Consensus 38 Lc~~~v~~iv~~~~g~~~~~~s~~~~~vl 66 (70)
+-.+..++++.+++|.+ .|.++.+..++
T Consensus 5 ~~~~~~~i~~~d~~g~i-~~~N~~~~~~~ 32 (126)
T 3mjq_A 5 LETIEDMILIINREGRL-LYANTAVPKKL 32 (126)
T ss_dssp GGGCSSEEEEEETTSBE-EEECTHHHHHH
T ss_pred HhhCCceEEEEeCCCcE-EEEcHHHHHHH
Confidence 44556678888888765 46666555544
No 27
>2dm0_A Tyrosine-protein kinase TXK; TEC family kinase, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.46 E-value=59 Score=19.03 Aligned_cols=37 Identities=5% Similarity=-0.069 Sum_probs=21.8
Q ss_pred hhhhccc--------cccEEEEEEcCCCceEEeeC---CcHHHhhhcC
Q 037016 33 KELSILC--------DAEVGLAIFSSTAKLYEFAN---TRLLCSLTTV 69 (70)
Q Consensus 33 ~Els~Lc--------~~~v~~iv~~~~g~~~~~~s---~~~~~vl~~~ 69 (70)
+-||+.+ .+....|...++|..+.... +++.++++.|
T Consensus 52 y~LSv~~~~~~~~~~~v~H~~I~~~~~g~~~l~~~~~F~sl~eLV~~y 99 (125)
T 2dm0_A 52 YTISVFMGARRSTEAAIKHYQIKKNDSGQWYVAERHAFQSIPELIWYH 99 (125)
T ss_dssp EEEEEECCCSSSSSCCEEEEEEEECTTCCEESSSSCCCSSHHHHHHHH
T ss_pred EEEEEEeccccCCCCcEEEEEEEEcCCCCEEECCCCccCCHHHHHHHh
Confidence 4577776 34455555566776664433 3777777654
No 28
>1p0z_A Sensor kinase CITA; transferase; HET: FLC MO7; 1.60A {Klebsiella pneumoniae} SCOP: d.110.6.1 PDB: 2v9a_A 2j80_A*
Probab=20.44 E-value=1.1e+02 Score=17.59 Aligned_cols=33 Identities=9% Similarity=0.080 Sum_probs=24.9
Q ss_pred hHHHHhhhhhccccccEEEEEEcCCCceEEeeCC
Q 037016 27 GLIKKAKELSILCDAEVGLAIFSSTAKLYEFANT 60 (70)
Q Consensus 27 gL~KKa~Els~Lc~~~v~~iv~~~~g~~~~~~s~ 60 (70)
.|-..+.++.-..|++ .+++.+++|..+..+.|
T Consensus 36 ~l~~~~~~~~~~~~~~-~i~v~d~~G~~~a~~~~ 68 (131)
T 1p0z_A 36 RIKALIDPMRSFSDAT-YITVGDASGQRLYHVNP 68 (131)
T ss_dssp HHHHHHHHHHHHSCCS-EEEEEETTSBEEECSSG
T ss_pred HHHHHHHHHHHhcCCC-EEEEEcCCCcEEEecCh
Confidence 4566677788889999 78888888887665543
No 29
>1vq8_U 50S ribosomal protein L24E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.39.1.6 PDB: 1giy_R 1jj2_T 1k73_V* 1k8a_V* 1k9m_V* 1kc8_V* 1kd1_V* 1kqs_T* 1m1k_V* 1m90_V* 1ml5_r* 1n8r_V* 1nji_V* 1q7y_V* 1q81_V* 1q82_V* 1q86_V* 1qvf_T 1qvg_T 1s72_U* ...
Probab=20.37 E-value=63 Score=17.91 Aligned_cols=28 Identities=7% Similarity=0.240 Sum_probs=20.4
Q ss_pred hhhccccccEE----EEEEcCCCceEEeeCCc
Q 037016 34 ELSILCDAEVG----LAIFSSTAKLYEFANTR 61 (70)
Q Consensus 34 Els~Lc~~~v~----~iv~~~~g~~~~~~s~~ 61 (70)
|+|..||.+|- ...+-.||+++.|++..
T Consensus 4 ~~C~Fcg~~IyPG~G~~~Vr~Dgkvf~FcssK 35 (66)
T 1vq8_U 4 RECDYCGTDIEPGTGTMFVHKDGATTHFCSSK 35 (66)
T ss_dssp CBCTTTCCBCCSSCCEEEECTTSCEEEESCHH
T ss_pred eEecCcCCcccCCCceEEEeeCCcEEEEECHH
Confidence 66777777753 45556789999999873
No 30
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=20.12 E-value=1.1e+02 Score=20.85 Aligned_cols=30 Identities=7% Similarity=0.032 Sum_probs=22.7
Q ss_pred ccccccEEEEEEcCCCceEEeeCCcHHHhhh
Q 037016 37 ILCDAEVGLAIFSSTAKLYEFANTRLLCSLT 67 (70)
Q Consensus 37 ~Lc~~~v~~iv~~~~g~~~~~~s~~~~~vl~ 67 (70)
++-.++-.+++++++|. ..|.|+++..+|.
T Consensus 91 ~l~a~~~~i~v~~~~G~-i~yvs~~~~~~lG 120 (361)
T 4f3l_A 91 MLEALDGFFLAIMTDGS-IIYVSESVTSLLE 120 (361)
T ss_dssp HHHHTTEEEEEEETTSB-EEEECTTHHHHHC
T ss_pred HHHhcCceEEEEcCCcc-EEEEechhhhhcC
Confidence 45556778888898886 4689998888774
No 31
>3uh9_A Metallothiol transferase FOSB 2; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta fold, cytosol; HET: MSE; 1.60A {Bacillus anthracis}
Probab=20.05 E-value=1e+02 Score=17.29 Aligned_cols=24 Identities=21% Similarity=0.243 Sum_probs=18.2
Q ss_pred EEEEEEcCCCceEEeeCCcHHHhh
Q 037016 43 VGLAIFSSTAKLYEFANTRLLCSL 66 (70)
Q Consensus 43 v~~iv~~~~g~~~~~~s~~~~~vl 66 (70)
..+.+.+|+|....+.+++..+=+
T Consensus 102 ~~~~~~DPdG~~iel~~~~~~~~~ 125 (145)
T 3uh9_A 102 RSLYFTDPDGHKFEFHTGTLQNRL 125 (145)
T ss_dssp CEEEEECTTCCEEEEESSCHHHHH
T ss_pred eEEEEEcCCCCEEEEEcCcHHHHH
Confidence 355678999999999998655443
Done!