Query 037016
Match_columns 70
No_of_seqs 125 out of 1071
Neff 5.8
Searched_HMMs 13730
Date Mon Mar 25 12:48:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037016.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/037016hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1egwa_ d.88.1.1 (A:) Myocyte 100.0 2.8E-37 2E-41 181.4 2.6 68 2-69 1-68 (71)
2 d1srsa_ d.88.1.1 (A:) Serum re 100.0 8.1E-36 5.9E-40 180.0 2.2 69 1-69 2-70 (84)
3 d1mnma_ d.88.1.1 (A:) MCM1 tra 100.0 1.5E-35 1.1E-39 179.1 2.1 68 2-69 3-70 (85)
4 d1pvma3 g.41.13.1 (A:143-178) 66.7 2.9 0.00021 19.6 2.7 24 34-57 2-25 (36)
5 d2oola2 d.110.3.9 (A:26-139) S 54.5 6.4 0.00046 21.3 3.2 26 43-68 18-43 (114)
6 d1kafa_ d.199.1.1 (A:) DNA-bin 51.1 3.2 0.00023 24.1 1.5 24 5-28 22-46 (108)
7 d1v9ya_ d.110.3.2 (A:) Direct 44.5 6.2 0.00045 20.0 2.0 29 37-66 6-34 (113)
8 d1b43a1 a.60.7.1 (A:220-339) F 39.8 3 0.00022 23.9 0.1 11 33-43 7-17 (120)
9 d3c2wa2 d.110.2.4 (A:310-494) 35.0 15 0.0011 22.2 3.0 37 27-65 29-65 (185)
10 d1m2da_ c.47.1.11 (A:) Thiored 33.5 8.3 0.0006 20.9 1.4 22 47-68 64-86 (101)
11 d2veaa2 d.110.2.4 (A:327-514) 32.1 31 0.0022 20.8 4.1 38 26-65 24-62 (188)
12 d1p97a_ d.110.3.7 (A:) Hypoxia 30.8 25 0.0018 17.9 3.1 27 40-67 4-30 (114)
13 d1j2qh_ d.153.1.4 (H:) Proteas 28.3 26 0.0019 20.2 3.2 39 30-69 162-200 (202)
14 d1u3em2 d.285.1.1 (M:106-174) 25.7 22 0.0016 18.7 2.1 17 44-60 17-33 (69)
15 d2d30a1 c.97.1.1 (A:1-124) mon 25.6 46 0.0034 18.6 3.8 30 28-57 6-40 (124)
16 d2a2la1 d.110.9.1 (A:4-145) Dh 24.5 37 0.0027 19.2 3.3 30 30-59 20-49 (142)
17 d2hq4a1 d.342.1.1 (A:1-152) Hy 24.2 32 0.0023 20.5 3.0 24 46-69 125-148 (152)
18 d2i02a1 b.45.1.1 (A:5-147) Gen 21.8 56 0.0041 17.7 3.7 27 28-56 6-33 (143)
19 d1nwza_ d.110.3.1 (A:) Photoac 20.5 28 0.0021 18.5 2.0 30 36-66 21-50 (125)
20 d1ew0a_ d.110.3.2 (A:) Histidi 20.2 28 0.0021 17.9 2.0 29 37-66 21-49 (130)
21 d1a77a1 a.60.7.1 (A:209-316) F 20.1 11 0.00078 20.7 0.1 10 33-42 7-16 (108)
No 1
>d1egwa_ d.88.1.1 (A:) Myocyte enhancer factor Mef2a core {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00 E-value=2.8e-37 Score=181.42 Aligned_cols=68 Identities=50% Similarity=0.769 Sum_probs=67.1
Q ss_pred CccceeeEEccCCCCccchhhhhhchHHHHhhhhhccccccEEEEEEcCCCceEEeeCCcHHHhhhcC
Q 037016 2 GRGKIVIQKINNSTSRQVTFSKRRKGLIKKAKELSILCDAEVGLAIFSSTAKLYEFANTRLLCSLTTV 69 (70)
Q Consensus 2 gR~ki~ik~I~~~~~R~~tf~KR~~gL~KKa~Els~Lc~~~v~~iv~~~~g~~~~~~s~~~~~vl~~~ 69 (70)
||+||+|++|+|+..|++||+||+.||||||.|||+||||+||+|||+|+|++|+|+||+++++|++|
T Consensus 1 GR~Ki~ik~Ie~~~~R~vTFsKRk~GL~KKa~ELs~LC~~~valiv~s~~gk~~~f~s~~~~~vl~ry 68 (71)
T d1egwa_ 1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKY 68 (71)
T ss_dssp CCSCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCEEEEESSCHHHHHHHH
T ss_pred CCccceEEeccCCchheeehhHhhhhHHHHHHHHhhccCCcEEEEEEcCCCCEEEeeCCCHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999987
No 2
>d1srsa_ d.88.1.1 (A:) Serum response factor (SRF) core {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00 E-value=8.1e-36 Score=179.97 Aligned_cols=69 Identities=42% Similarity=0.550 Sum_probs=67.4
Q ss_pred CCccceeeEEccCCCCccchhhhhhchHHHHhhhhhccccccEEEEEEcCCCceEEeeCCcHHHhhhcC
Q 037016 1 MGRGKIVIQKINNSTSRQVTFSKRRKGLIKKAKELSILCDAEVGLAIFSSTAKLYEFANTRLLCSLTTV 69 (70)
Q Consensus 1 mgR~ki~ik~I~~~~~R~~tf~KR~~gL~KKa~Els~Lc~~~v~~iv~~~~g~~~~~~s~~~~~vl~~~ 69 (70)
+||+||+|++|+|+..|++||+||+.||||||+|||+||||+||+|||+|+|++|+|+||++++++++|
T Consensus 2 ~GR~Ki~i~~Ie~~~~R~vTFsKRr~GL~KKa~ELs~Lc~~~v~liv~s~~gk~~~f~s~~~~~vi~~~ 70 (84)
T d1srsa_ 2 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRKLQPMITSE 70 (84)
T ss_dssp CCCCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECTTCCEEEEECGGGHHHHSSH
T ss_pred CCCceeeEEeecCcchhhhhhHHhhhhHHHHHHHHhcccCCcEEEEEEcCCCCEEEeeCCCHHHHHHHH
Confidence 699999999999999999999999999999999999999999999999999999999999999999875
No 3
>d1mnma_ d.88.1.1 (A:) MCM1 transcriptional regulator {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=100.00 E-value=1.5e-35 Score=179.11 Aligned_cols=68 Identities=43% Similarity=0.570 Sum_probs=66.9
Q ss_pred CccceeeEEccCCCCccchhhhhhchHHHHhhhhhccccccEEEEEEcCCCceEEeeCCcHHHhhhcC
Q 037016 2 GRGKIVIQKINNSTSRQVTFSKRRKGLIKKAKELSILCDAEVGLAIFSSTAKLYEFANTRLLCSLTTV 69 (70)
Q Consensus 2 gR~ki~ik~I~~~~~R~~tf~KR~~gL~KKa~Els~Lc~~~v~~iv~~~~g~~~~~~s~~~~~vl~~~ 69 (70)
||+||+|++|+|+..|++||+||+.||||||.|||+||||+||+|||+|+|++|+|+||+++++|++|
T Consensus 3 ~R~Ki~i~~I~~~~~R~vTFsKRr~GL~KKa~ELsvLc~a~vaviv~s~~gk~~~f~sp~v~~vl~r~ 70 (85)
T d1mnma_ 3 ERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFSTPKFEPIVTQQ 70 (85)
T ss_dssp CCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEECTTTTHHHHSH
T ss_pred CccceEEEEecCCchhhhhhHHHHhhHHHHHHHHhccCCCcEEEEEEcCCCCEEeccCCCHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999876
No 4
>d1pvma3 g.41.13.1 (A:143-178) Hypothetical protein Ta0289 C-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}
Probab=66.70 E-value=2.9 Score=19.56 Aligned_cols=24 Identities=17% Similarity=0.336 Sum_probs=19.7
Q ss_pred hhhccccccEEEEEEcCCCceEEe
Q 037016 34 ELSILCDAEVGLAIFSSTAKLYEF 57 (70)
Q Consensus 34 Els~Lc~~~v~~iv~~~~g~~~~~ 57 (70)
.|+--||+-|...+|+..|..-.|
T Consensus 2 hlcpkcgvgvl~pvy~~kgeikvf 25 (36)
T d1pvma3 2 HLCPKCGVGVLEPVYNEKGEIKVF 25 (36)
T ss_dssp CBCTTTSSSBEEEEECTTSCEEEE
T ss_pred ccCCccCceEEEEeecCCCcEEEE
Confidence 467789999999999998865555
No 5
>d2oola2 d.110.3.9 (A:26-139) Sensor protein PhyB2 {Rhodopseudomonas palustris [TaxId: 1076]}
Probab=54.46 E-value=6.4 Score=21.29 Aligned_cols=26 Identities=15% Similarity=-0.077 Sum_probs=20.0
Q ss_pred EEEEEEcCCCceEEeeCCcHHHhhhc
Q 037016 43 VGLAIFSSTAKLYEFANTRLLCSLTT 68 (70)
Q Consensus 43 v~~iv~~~~g~~~~~~s~~~~~vl~~ 68 (70)
-+|++.++.+....|.|+++.++|..
T Consensus 18 G~Llvld~~d~~I~~vS~N~~~lLG~ 43 (114)
T d2oola2 18 GYLFVVSETDLRIASVSANVEDLLRQ 43 (114)
T ss_dssp SEEEEECTTTCBEEEEETTHHHHHSS
T ss_pred cEEEEEECCCCEEEEEcCCHHHHhCC
Confidence 36788887666667999999888754
No 6
>d1kafa_ d.199.1.1 (A:) DNA-binding C-terminal domain of the transcription factor MotA {Bacteriophage T4 [TaxId: 10665]}
Probab=51.13 E-value=3.2 Score=24.05 Aligned_cols=24 Identities=21% Similarity=0.391 Sum_probs=19.5
Q ss_pred ceeeEEc-cCCCCccchhhhhhchH
Q 037016 5 KIVIQKI-NNSTSRQVTFSKRRKGL 28 (70)
Q Consensus 5 ki~ik~I-~~~~~R~~tf~KR~~gL 28 (70)
+|+++.| ++.++-.++|.||-.|+
T Consensus 22 ~i~lk~v~inRsNyev~f~krT~Gi 46 (108)
T d1kafa_ 22 GFVLKKVEIYRSNYLAILEKRTNGI 46 (108)
T ss_dssp TCCEEEEEEETTEEEEEEEEEETTE
T ss_pred ceeEeeeeeccccceeehhhhcCce
Confidence 5788888 45667889999999887
No 7
>d1v9ya_ d.110.3.2 (A:) Direct oxygen sensor protein, DOS {Escherichia coli [TaxId: 562]}
Probab=44.47 E-value=6.2 Score=19.98 Aligned_cols=29 Identities=14% Similarity=0.142 Sum_probs=19.0
Q ss_pred ccccccEEEEEEcCCCceEEeeCCcHHHhh
Q 037016 37 ILCDAEVGLAIFSSTAKLYEFANTRLLCSL 66 (70)
Q Consensus 37 ~Lc~~~v~~iv~~~~g~~~~~~s~~~~~vl 66 (70)
++=.+..++++++++|.+. |..+++..++
T Consensus 6 ~~e~~~d~i~~~d~~g~i~-~~N~~~~~l~ 34 (113)
T d1v9ya_ 6 ALEQNMMGAVLINENDEVM-FFNPAAEKLW 34 (113)
T ss_dssp HHHTCSSEEEEECTTSBEE-EECHHHHHHH
T ss_pred HHHcCcCcEEEEeCCCCEE-EEchhHhhhh
Confidence 3344555899999987754 6666555554
No 8
>d1b43a1 a.60.7.1 (A:220-339) Flap endonuclease-1 (Fen-1 nuclease) {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=39.76 E-value=3 Score=23.93 Aligned_cols=11 Identities=36% Similarity=0.513 Sum_probs=7.9
Q ss_pred hhhhccccccE
Q 037016 33 KELSILCDAEV 43 (70)
Q Consensus 33 ~Els~Lc~~~v 43 (70)
-+||+|||+|=
T Consensus 7 Idl~iL~G~DY 17 (120)
T d1b43a1 7 IELAILVGTDY 17 (120)
T ss_dssp HHHHHHHCCTT
T ss_pred HHHHHHhCCCC
Confidence 46788888763
No 9
>d3c2wa2 d.110.2.4 (A:310-494) Bacteriophytochrome BphP {Pseudomonas aeruginosa [TaxId: 287]}
Probab=35.04 E-value=15 Score=22.18 Aligned_cols=37 Identities=8% Similarity=0.103 Sum_probs=28.3
Q ss_pred hHHHHhhhhhccccccEEEEEEcCCCceEEeeCCcHHHh
Q 037016 27 GLIKKAKELSILCDAEVGLAIFSSTAKLYEFANTRLLCS 65 (70)
Q Consensus 27 gL~KKa~Els~Lc~~~v~~iv~~~~g~~~~~~s~~~~~v 65 (70)
+|.....+|.-|.+|+-+.|+++ |+..+.++|...++
T Consensus 29 ~l~~~~~~ll~l~~AdG~ai~~~--g~~~~~g~p~~~~i 65 (185)
T d3c2wa2 29 ALAHPDDGIAALIPCDGALVMLG--GRTLSIRGDFERQA 65 (185)
T ss_dssp HHTCTTTSHHHHTTCSEEEEEET--TEEEEESSCCHHHH
T ss_pred HHhcCCHHHHhhhCCCEEEEEEC--CEEEEcCCCCHHHH
Confidence 55555567999999999998884 77888888865554
No 10
>d1m2da_ c.47.1.11 (A:) Thioredoxin-like 2Fe-2S ferredoxin {Aquifex aeolicus [TaxId: 63363]}
Probab=33.55 E-value=8.3 Score=20.94 Aligned_cols=22 Identities=5% Similarity=-0.002 Sum_probs=16.5
Q ss_pred EEcCCCceEEeeCC-cHHHhhhc
Q 037016 47 IFSSTAKLYEFANT-RLLCSLTT 68 (70)
Q Consensus 47 v~~~~g~~~~~~s~-~~~~vl~~ 68 (70)
++-|+|.+|...+| ++.++|+.
T Consensus 64 ~i~P~~~~Y~~v~~e~v~~Iv~~ 86 (101)
T d1m2da_ 64 VVYPDGVWYGQVKPEDVDEIVEK 86 (101)
T ss_dssp EEETTTEEECSCCGGGHHHHHHH
T ss_pred EEcCCccEEecCCHHHHHHHHHH
Confidence 34477888888887 78888764
No 11
>d2veaa2 d.110.2.4 (A:327-514) Phytochrome-like protein Cph1 {Synechocystis sp. pcc 6803 [TaxId: 1148]}
Probab=32.12 E-value=31 Score=20.76 Aligned_cols=38 Identities=18% Similarity=0.166 Sum_probs=30.1
Q ss_pred chHHHHhhhhhccccccEEEEEEcCCCceEEeeC-CcHHHh
Q 037016 26 KGLIKKAKELSILCDAEVGLAIFSSTAKLYEFAN-TRLLCS 65 (70)
Q Consensus 26 ~gL~KKa~Els~Lc~~~v~~iv~~~~g~~~~~~s-~~~~~v 65 (70)
.||..-..+|.-|++|+-+.|+++ |++++++. |..+++
T Consensus 24 ~~l~~~~~~ll~l~~A~G~al~~~--~~~~~~G~~P~~~~i 62 (188)
T d2veaa2 24 EGLTNHPDRLLGLTGSQGAAICFG--EKLILVGETPDEKAV 62 (188)
T ss_dssp HHHHTCHHHHHHTTTCSEEEEEET--TEEEEEESCCCHHHH
T ss_pred HHHHhCCHHHHhhcCCCEEEEEEC--CEEEEeCCCcCHHHH
Confidence 467778888999999999988885 78999996 455444
No 12
>d1p97a_ d.110.3.7 (A:) Hypoxia-inducible factor Hif2a, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=30.75 E-value=25 Score=17.86 Aligned_cols=27 Identities=19% Similarity=0.229 Sum_probs=18.6
Q ss_pred cccEEEEEEcCCCceEEeeCCcHHHhhh
Q 037016 40 DAEVGLAIFSSTAKLYEFANTRLLCSLT 67 (70)
Q Consensus 40 ~~~v~~iv~~~~g~~~~~~s~~~~~vl~ 67 (70)
|+.+++...+++|+.. |.++.+..++.
T Consensus 4 d~~~fi~r~~~dG~i~-~~N~~~~~~~G 30 (114)
T d1p97a_ 4 DSKTFLSRHSMDMKFT-YCDDRITELIG 30 (114)
T ss_dssp CCEEEEEEECTTTSCS-EECTTHHHHTS
T ss_pred CcCEEEEEECCCCcEE-EECHHHHHHcC
Confidence 3456677778888765 77787776653
No 13
>d1j2qh_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=28.33 E-value=26 Score=20.20 Aligned_cols=39 Identities=8% Similarity=0.147 Sum_probs=27.1
Q ss_pred HHhhhhhccccccEEEEEEcCCCceEEeeCCcHHHhhhcC
Q 037016 30 KKAKELSILCDAEVGLAIFSSTAKLYEFANTRLLCSLTTV 69 (70)
Q Consensus 30 KKa~Els~Lc~~~v~~iv~~~~g~~~~~~s~~~~~vl~~~ 69 (70)
+.|.+.-.++|-.+-+.+.+.+| .+.+....++++|..|
T Consensus 162 ~~~~~~d~~~g~~v~v~~i~~~g-~~~~~~~ei~~~l~~~ 200 (202)
T d1j2qh_ 162 YSAMKRDSASGDGIDVVKITEDE-FYQYSPEEVEQILAKF 200 (202)
T ss_dssp HHHHTTCTTSCSCEEEEEECSSC-EEECHHHHHHHHGGGT
T ss_pred HHHHHhcCCCCCeEEEEEEECCC-EEEeCHHHHHHHHHHh
Confidence 34444455666677777777765 6777777888988876
No 14
>d1u3em2 d.285.1.1 (M:106-174) Intron-encoded homing endonuclease I-HmuI {Bacteriophage SP01 [TaxId: 10685]}
Probab=25.67 E-value=22 Score=18.73 Aligned_cols=17 Identities=18% Similarity=0.257 Sum_probs=14.5
Q ss_pred EEEEEcCCCceEEeeCC
Q 037016 44 GLAIFSSTAKLYEFANT 60 (70)
Q Consensus 44 ~~iv~~~~g~~~~~~s~ 60 (70)
-+++++|+|--|.|+|.
T Consensus 17 pIyvis~sGh~y~f~s~ 33 (69)
T d1u3em2 17 PIIVISPDGIEKEYPST 33 (69)
T ss_dssp CEEEECTTSCEEEESCH
T ss_pred CEEEEcCCCceEEcchH
Confidence 46778999999999986
No 15
>d2d30a1 c.97.1.1 (A:1-124) mono-domain cytidine deaminase {Bacillus anthracis [TaxId: 1392]}
Probab=25.60 E-value=46 Score=18.58 Aligned_cols=30 Identities=30% Similarity=0.398 Sum_probs=21.6
Q ss_pred HHHHhhhhhcc-----ccccEEEEEEcCCCceEEe
Q 037016 28 LIKKAKELSIL-----CDAEVGLAIFSSTAKLYEF 57 (70)
Q Consensus 28 L~KKa~Els~L-----c~~~v~~iv~~~~g~~~~~ 57 (70)
|++.|.|..-. ++-.|+-.+...+|++|+=
T Consensus 6 L~~~A~~a~~~ayaPyS~f~VGAal~~~~G~i~~G 40 (124)
T d2d30a1 6 LIQEAIEARKQAYVPYSKFQVGAALLTQDGKVYRG 40 (124)
T ss_dssp HHHHHHHHHTTCBCTTTCCCEEEEEEETTCCEEEE
T ss_pred HHHHHHHHHHcCcCCccCCcEEEEEEeCCCCEEEE
Confidence 67777665544 4556888888899998753
No 16
>d2a2la1 d.110.9.1 (A:4-145) DhaI homolog {Klebsiella pneumoniae [TaxId: 573]}
Probab=24.46 E-value=37 Score=19.23 Aligned_cols=30 Identities=3% Similarity=0.029 Sum_probs=21.9
Q ss_pred HHhhhhhccccccEEEEEEcCCCceEEeeC
Q 037016 30 KKAKELSILCDAEVGLAIFSSTAKLYEFAN 59 (70)
Q Consensus 30 KKa~Els~Lc~~~v~~iv~~~~g~~~~~~s 59 (70)
.-|.+-+.--|..|++.|++++|.+..|.-
T Consensus 20 ~~a~~~a~~~g~~v~iaVvD~~G~l~~~~R 49 (142)
T d2a2la1 20 AAVEKKATEINVAVVFSVVDRGGNTLLIQR 49 (142)
T ss_dssp HHHHHHHHHTTCCCEEEEEETTSCEEEEEE
T ss_pred HHHHHHHHHcCCceEEEEEcCCCCEEEEEe
Confidence 344444455588899999999998887754
No 17
>d2hq4a1 d.342.1.1 (A:1-152) Hypothetical protein PH1570 {Pyrococcus horikoshii [TaxId: 53953]}
Probab=24.23 E-value=32 Score=20.46 Aligned_cols=24 Identities=13% Similarity=0.304 Sum_probs=20.0
Q ss_pred EEEcCCCceEEeeCCcHHHhhhcC
Q 037016 46 AIFSSTAKLYEFANTRLLCSLTTV 69 (70)
Q Consensus 46 iv~~~~g~~~~~~s~~~~~vl~~~ 69 (70)
.+.++.|.++.|.-|++.+.|-.|
T Consensus 125 FiLD~rg~LfiFnKPs~~e~iLKY 148 (152)
T d2hq4a1 125 FILDPRGRLFIFNKPSIANKILKY 148 (152)
T ss_dssp EEECTTSEEEEESSTTHHHHHHTT
T ss_pred eeECCCceEEEEcCccHHHHHHHH
Confidence 455788999999999999888665
No 18
>d2i02a1 b.45.1.1 (A:5-147) General stress protein 26 {Nostoc punctiforme pcc 73102 [TaxId: 63737]}
Probab=21.78 E-value=56 Score=17.73 Aligned_cols=27 Identities=22% Similarity=0.295 Sum_probs=16.8
Q ss_pred HHHHhhhhhccccccEEEEEE-cCCCceEE
Q 037016 28 LIKKAKELSILCDAEVGLAIF-SSTAKLYE 56 (70)
Q Consensus 28 L~KKa~Els~Lc~~~v~~iv~-~~~g~~~~ 56 (70)
.++|+.|| |-++.+|++.. +++|.++.
T Consensus 6 ~~~~~~e~--l~~~~~~~laT~~~dG~P~~ 33 (143)
T d2i02a1 6 EIQKLHEL--IKNIDYGMFTTVDDDGSLHS 33 (143)
T ss_dssp HHHHHHHH--HTTCCEEEEEEECTTSCEEE
T ss_pred HHHHHHHH--HhCCCEEEEEEECCCCCEEE
Confidence 45677766 45566677665 56776654
No 19
>d1nwza_ d.110.3.1 (A:) Photoactive yellow protein, PYP {Ectothiorhodospira halophila [TaxId: 1053]}
Probab=20.48 E-value=28 Score=18.50 Aligned_cols=30 Identities=10% Similarity=-0.069 Sum_probs=21.0
Q ss_pred hccccccEEEEEEcCCCceEEeeCCcHHHhh
Q 037016 36 SILCDAEVGLAIFSSTAKLYEFANTRLLCSL 66 (70)
Q Consensus 36 s~Lc~~~v~~iv~~~~g~~~~~~s~~~~~vl 66 (70)
++|=.+..++++.+++|.+. |..+.+..++
T Consensus 21 ~~ld~~p~gi~~lD~~G~i~-~~N~a~~~l~ 50 (125)
T d1nwza_ 21 GQLDGLAFGAIQLDGDGNIL-QYNAAEGDIT 50 (125)
T ss_dssp HHHTTCSSEEEEEETTCBEE-EECHHHHHHH
T ss_pred HHHhCCCccEEEEeCCCCEE-EEcHHHHHhh
Confidence 46777788999999988665 5555444443
No 20
>d1ew0a_ d.110.3.2 (A:) Histidine kinase FixL heme domain {Rhizobium meliloti [TaxId: 382]}
Probab=20.20 E-value=28 Score=17.86 Aligned_cols=29 Identities=10% Similarity=0.063 Sum_probs=19.9
Q ss_pred ccccccEEEEEEcCCCceEEeeCCcHHHhh
Q 037016 37 ILCDAEVGLAIFSSTAKLYEFANTRLLCSL 66 (70)
Q Consensus 37 ~Lc~~~v~~iv~~~~g~~~~~~s~~~~~vl 66 (70)
++-.+..++++.+.+|.+. |.++.+..++
T Consensus 21 i~~~~~~~i~~~d~~g~i~-~~N~~~~~l~ 49 (130)
T d1ew0a_ 21 ILDTVPDATVVSATDGTIV-SFNAAAVRQF 49 (130)
T ss_dssp HHTTCSSEEEEEETTSBEE-EECHHHHHHH
T ss_pred HHHcCCCeEEEEeCCccEE-EEHHHHHHhh
Confidence 5566678999999888754 5565555544
No 21
>d1a77a1 a.60.7.1 (A:209-316) Flap endonuclease-1 (Fen-1 nuclease) {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=20.07 E-value=11 Score=20.73 Aligned_cols=10 Identities=10% Similarity=0.434 Sum_probs=7.1
Q ss_pred hhhhcccccc
Q 037016 33 KELSILCDAE 42 (70)
Q Consensus 33 ~Els~Lc~~~ 42 (70)
-+|++|||++
T Consensus 7 IDl~iL~G~d 16 (108)
T d1a77a1 7 IDIAIFMGTD 16 (108)
T ss_dssp HHHHHHHCCT
T ss_pred HHHHHHhCCc
Confidence 4677888865
Done!