BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 037017
         (146 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2XQY|A Chain A, Crystal Structure Of Pseudorabies Core Fragment Of
           Glycoprotein H In Complex With Fab D6.3
 pdb|2XQY|E Chain E, Crystal Structure Of Pseudorabies Core Fragment Of
           Glycoprotein H In Complex With Fab D6.3
          Length = 572

 Score = 26.2 bits (56), Expect = 6.5,   Method: Composition-based stats.
 Identities = 14/35 (40%), Positives = 18/35 (51%)

Query: 102 LPSTNQELHMGGADALTETHQGLVIDLQTQLSNFK 136
           +PS N  LH G   AL     G V+DL +  S F+
Sbjct: 503 IPSFNPTLHGGDVKALMLFPNGTVVDLLSFTSTFE 537


>pdb|3ID5|B Chain B, Crystal Structure Of Sulfolobus Solfataricus CD RNP
           ASSEMBLED WITH Nop5, Fibrillarin, L7ae And A Split Half
           CD RNA
 pdb|3ID5|F Chain F, Crystal Structure Of Sulfolobus Solfataricus CD RNP
           ASSEMBLED WITH Nop5, Fibrillarin, L7ae And A Split Half
           CD RNA
 pdb|3ID6|C Chain C, Crystal Structure Of Sulfolobus Solfataricus Nop5 (1-262)
           And Fibrillarin Complex
 pdb|3PLA|E Chain E, Crystal Structure Of A Catalytically Active
           Substrate-Bound Box CD Rnp From Sulfolobus Solfataricus
 pdb|3PLA|F Chain F, Crystal Structure Of A Catalytically Active
           Substrate-Bound Box CD Rnp From Sulfolobus Solfataricus
 pdb|3PLA|M Chain M, Crystal Structure Of A Catalytically Active
           Substrate-Bound Box CD Rnp From Sulfolobus Solfataricus
          Length = 232

 Score = 25.8 bits (55), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 20/77 (25%), Positives = 31/77 (40%), Gaps = 4/77 (5%)

Query: 57  TTNFQANFLPYGETFFKYPTGRFSDGRIIPDFIAE--FSGLPLIPTFLPSTNQELHMGGA 114
           T N   NF  YGE   KY    + +       +A     GL   P  +    + L++G A
Sbjct: 29  TRNLVPNFNVYGERLIKYEGVEYREWNAFRSKLAGAILKGLKTNP--IRKGTKVLYLGAA 86

Query: 115 DALTETHQGLVIDLQTQ 131
              T +H   +I+L  +
Sbjct: 87  SGTTISHVSDIIELNGK 103


>pdb|3TNU|A Chain A, Heterocomplex Of Coil 2b Domains Of Human Intermediate
           Filament Proteins, Keratin 5 (Krt5) And Keratin 14
           (Krt14)
          Length = 131

 Score = 25.8 bits (55), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 3/33 (9%)

Query: 104 STNQELHMGGADALTE---THQGLVIDLQTQLS 133
           +TN EL   G   ++E   T Q L I+LQ+QLS
Sbjct: 27  ATNSELVQSGKSEISELRRTMQNLEIELQSQLS 59


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.324    0.142    0.421 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,407,307
Number of Sequences: 62578
Number of extensions: 187560
Number of successful extensions: 400
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 399
Number of HSP's gapped (non-prelim): 6
length of query: 146
length of database: 14,973,337
effective HSP length: 90
effective length of query: 56
effective length of database: 9,341,317
effective search space: 523113752
effective search space used: 523113752
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 46 (22.3 bits)