Query 037018
Match_columns 663
No_of_seqs 335 out of 4566
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 07:45:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037018.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037018hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 8.3E-66 1.8E-70 579.8 32.7 574 22-634 161-866 (889)
2 PLN03210 Resistant to P. syrin 100.0 1.2E-54 2.7E-59 515.6 38.8 583 16-651 181-905 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 8E-33 1.7E-37 282.6 9.6 230 24-279 1-281 (287)
4 PLN00113 leucine-rich repeat r 99.9 6.6E-26 1.4E-30 269.9 21.2 271 371-650 139-415 (968)
5 PLN00113 leucine-rich repeat r 99.9 5.9E-26 1.3E-30 270.3 19.5 319 321-650 118-463 (968)
6 KOG0444 Cytoskeletal regulator 99.9 3.8E-27 8.2E-32 241.6 -5.8 313 321-651 55-374 (1255)
7 KOG4194 Membrane glycoprotein 99.9 6.2E-24 1.4E-28 217.0 5.1 317 320-650 101-427 (873)
8 KOG0444 Cytoskeletal regulator 99.9 1.1E-25 2.5E-30 230.8 -7.7 311 319-650 30-350 (1255)
9 KOG4194 Membrane glycoprotein 99.9 1.6E-23 3.5E-28 214.0 2.7 326 319-656 123-462 (873)
10 PLN03210 Resistant to P. syrin 99.8 2.4E-19 5.1E-24 214.3 20.2 286 320-631 588-909 (1153)
11 KOG0472 Leucine-rich repeat pr 99.8 2.4E-22 5.3E-27 197.1 -9.3 291 343-650 159-539 (565)
12 KOG0472 Leucine-rich repeat pr 99.8 1.1E-21 2.3E-26 192.6 -9.7 270 370-655 43-313 (565)
13 KOG0618 Serine/threonine phosp 99.7 6.8E-19 1.5E-23 189.8 -5.4 87 323-414 47-133 (1081)
14 PRK15387 E3 ubiquitin-protein 99.6 2.2E-15 4.9E-20 167.9 15.1 254 345-650 202-456 (788)
15 PRK15387 E3 ubiquitin-protein 99.6 1.7E-15 3.6E-20 168.9 13.5 260 325-635 205-465 (788)
16 PRK15370 E3 ubiquitin-protein 99.6 1.4E-15 3E-20 170.6 11.9 244 372-650 178-426 (754)
17 KOG0617 Ras suppressor protein 99.6 3.6E-17 7.8E-22 143.0 -5.4 162 365-531 27-190 (264)
18 KOG0618 Serine/threonine phosp 99.6 1.3E-16 2.8E-21 172.4 -3.4 245 370-628 217-489 (1081)
19 cd00116 LRR_RI Leucine-rich re 99.5 1.3E-15 2.7E-20 158.3 1.2 260 365-650 16-318 (319)
20 PRK15370 E3 ubiquitin-protein 99.5 2E-14 4.4E-19 161.3 10.4 224 372-627 199-427 (754)
21 KOG0617 Ras suppressor protein 99.5 6.3E-16 1.4E-20 135.3 -4.8 159 386-554 25-186 (264)
22 cd00116 LRR_RI Leucine-rich re 99.4 2.5E-14 5.3E-19 148.6 2.5 180 343-522 22-230 (319)
23 KOG4237 Extracellular matrix p 99.4 5E-15 1.1E-19 146.0 -5.4 273 341-627 64-358 (498)
24 KOG4237 Extracellular matrix p 99.4 1.8E-14 4E-19 142.1 -3.0 101 376-476 71-175 (498)
25 KOG4658 Apoptotic ATPase [Sign 99.3 1.5E-12 3.3E-17 148.6 5.8 198 343-555 522-731 (889)
26 KOG4341 F-box protein containi 99.0 1.3E-11 2.8E-16 123.3 -2.6 289 344-659 138-446 (483)
27 KOG1909 Ran GTPase-activating 99.0 7.6E-11 1.6E-15 115.4 2.2 247 366-627 24-310 (382)
28 KOG0532 Leucine-rich repeat (L 99.0 1.6E-11 3.5E-16 126.8 -2.8 167 377-554 80-247 (722)
29 KOG3207 Beta-tubulin folding c 99.0 4E-11 8.7E-16 120.4 -1.4 37 589-626 299-337 (505)
30 KOG0532 Leucine-rich repeat (L 98.9 5.3E-11 1.2E-15 123.1 -2.6 215 375-601 53-270 (722)
31 COG4886 Leucine-rich repeat (L 98.9 6.8E-10 1.5E-14 118.8 5.6 180 365-555 110-291 (394)
32 KOG3207 Beta-tubulin folding c 98.9 1.2E-10 2.5E-15 117.1 -0.3 210 386-601 112-336 (505)
33 KOG2120 SCF ubiquitin ligase, 98.9 1.2E-11 2.6E-16 118.0 -7.5 183 442-628 186-376 (419)
34 KOG1259 Nischarin, modulator o 98.9 4.2E-10 9E-15 107.7 1.5 129 484-627 281-411 (490)
35 COG4886 Leucine-rich repeat (L 98.9 1.7E-09 3.7E-14 115.7 6.4 195 376-581 97-293 (394)
36 KOG1909 Ran GTPase-activating 98.9 3.4E-10 7.3E-15 110.9 0.5 236 343-602 29-309 (382)
37 PF14580 LRR_9: Leucine-rich r 98.9 1.2E-09 2.6E-14 100.5 3.7 126 369-496 16-149 (175)
38 KOG1259 Nischarin, modulator o 98.8 9.4E-10 2E-14 105.3 1.1 227 363-602 173-410 (490)
39 KOG2120 SCF ubiquitin ligase, 98.7 2.5E-10 5.4E-15 109.2 -5.4 181 465-652 185-376 (419)
40 KOG4341 F-box protein containi 98.7 6.6E-10 1.4E-14 111.2 -4.5 238 415-657 161-419 (483)
41 PF14580 LRR_9: Leucine-rich r 98.7 9E-09 1.9E-13 94.8 2.9 84 512-602 41-124 (175)
42 KOG2982 Uncharacterized conser 98.3 1.8E-07 4E-12 89.9 1.0 65 540-605 198-263 (418)
43 PLN03150 hypothetical protein; 98.3 1.5E-06 3.2E-11 97.8 7.9 101 397-497 420-525 (623)
44 KOG2982 Uncharacterized conser 98.3 9.9E-08 2.1E-12 91.7 -1.3 199 394-599 70-287 (418)
45 PF13855 LRR_8: Leucine rich r 98.3 1E-06 2.3E-11 66.4 4.3 58 372-429 1-60 (61)
46 PF13855 LRR_8: Leucine rich r 98.1 2.1E-06 4.6E-11 64.7 3.7 57 395-451 1-59 (61)
47 KOG0531 Protein phosphatase 1, 98.1 2.8E-07 6E-12 99.0 -2.3 79 369-449 92-170 (414)
48 PLN03150 hypothetical protein; 98.1 5.3E-06 1.1E-10 93.4 7.3 112 514-632 419-532 (623)
49 KOG0531 Protein phosphatase 1, 98.1 4.8E-07 1E-11 97.2 -1.6 242 370-629 70-319 (414)
50 COG5238 RNA1 Ran GTPase-activa 98.0 2.7E-06 6E-11 80.9 2.1 248 369-628 27-316 (388)
51 PF12799 LRR_4: Leucine Rich r 97.9 1.8E-05 3.9E-10 54.8 3.9 39 396-434 2-40 (44)
52 PRK00411 cdc6 cell division co 97.9 7.1E-05 1.5E-09 80.1 10.4 119 10-150 22-149 (394)
53 cd01128 rho_factor Transcripti 97.9 3.7E-05 8.1E-10 75.5 7.4 85 44-150 17-114 (249)
54 PF12799 LRR_4: Leucine Rich r 97.8 2.1E-05 4.6E-10 54.4 3.5 40 372-411 1-40 (44)
55 PRK15386 type III secretion pr 97.8 7.7E-05 1.7E-09 77.4 8.9 156 463-650 50-211 (426)
56 KOG3665 ZYG-1-like serine/thre 97.8 7.1E-06 1.5E-10 92.2 0.7 104 343-450 121-229 (699)
57 PRK15386 type III secretion pr 97.7 0.00011 2.4E-09 76.3 8.9 134 365-522 46-186 (426)
58 KOG1859 Leucine-rich repeat pr 97.7 5.9E-07 1.3E-11 96.1 -8.0 177 458-651 102-291 (1096)
59 KOG1859 Leucine-rich repeat pr 97.7 8E-07 1.7E-11 95.2 -7.2 124 467-602 166-290 (1096)
60 TIGR03015 pepcterm_ATPase puta 97.7 0.00065 1.4E-08 68.4 14.1 96 44-160 44-145 (269)
61 TIGR02928 orc1/cdc6 family rep 97.7 0.00015 3.2E-09 76.8 9.4 116 12-150 9-140 (365)
62 COG5238 RNA1 Ran GTPase-activa 97.7 4.4E-05 9.6E-10 72.9 4.4 234 343-601 29-313 (388)
63 PRK09376 rho transcription ter 97.6 6E-05 1.3E-09 77.4 5.3 90 44-150 170-267 (416)
64 KOG3665 ZYG-1-like serine/thre 97.6 3.7E-05 8.1E-10 86.4 3.6 129 321-453 122-262 (699)
65 KOG1947 Leucine rich repeat pr 97.6 7.7E-06 1.7E-10 90.0 -2.1 36 369-404 185-223 (482)
66 cd00009 AAA The AAA+ (ATPases 97.6 0.00045 9.7E-09 62.1 9.3 42 22-63 1-43 (151)
67 PRK04841 transcriptional regul 97.5 0.005 1.1E-07 73.6 19.6 130 20-179 15-163 (903)
68 PF05729 NACHT: NACHT domain 97.5 0.00045 9.8E-09 63.7 8.2 111 44-179 1-131 (166)
69 PF13191 AAA_16: AAA ATPase do 97.4 0.00023 5E-09 67.2 6.1 43 21-63 2-48 (185)
70 TIGR00767 rho transcription te 97.4 0.00037 8E-09 72.1 7.4 88 44-150 169-266 (415)
71 KOG1947 Leucine rich repeat pr 97.4 2.1E-05 4.5E-10 86.6 -2.0 239 394-657 187-445 (482)
72 KOG4579 Leucine-rich repeat (L 97.4 1.1E-05 2.4E-10 69.1 -3.3 103 373-476 28-134 (177)
73 PF13173 AAA_14: AAA domain 97.3 0.0005 1.1E-08 60.6 6.1 48 130-178 52-99 (128)
74 PF01637 Arch_ATPase: Archaeal 97.2 0.0014 3.1E-08 64.1 9.5 41 21-61 1-42 (234)
75 PF13401 AAA_22: AAA domain; P 97.2 0.00072 1.6E-08 59.7 6.3 110 43-177 7-125 (131)
76 KOG1644 U2-associated snRNP A' 97.2 0.00056 1.2E-08 62.9 5.1 100 396-497 43-150 (233)
77 KOG4579 Leucine-rich repeat (L 97.2 7.8E-05 1.7E-09 64.0 -0.4 72 365-436 70-141 (177)
78 PTZ00202 tuzin; Provisional 97.0 0.0077 1.7E-07 62.7 12.2 103 15-145 258-367 (550)
79 KOG1644 U2-associated snRNP A' 97.0 0.00096 2.1E-08 61.4 4.9 86 510-600 61-149 (233)
80 COG1474 CDC6 Cdc6-related prot 96.9 0.0043 9.4E-08 64.7 9.8 131 20-174 18-160 (366)
81 KOG2543 Origin recognition com 96.9 0.0052 1.1E-07 62.1 9.7 109 19-150 6-126 (438)
82 PTZ00112 origin recognition co 96.9 0.0039 8.5E-08 70.0 9.7 144 12-174 749-906 (1164)
83 KOG2739 Leucine-rich acidic nu 96.8 0.00032 6.9E-09 67.2 -0.2 86 540-626 64-154 (260)
84 PRK11331 5-methylcytosine-spec 96.5 0.016 3.5E-07 61.2 9.9 106 19-150 175-283 (459)
85 PF04665 Pox_A32: Poxvirus A32 96.4 0.039 8.4E-07 53.6 11.5 31 42-84 15-46 (241)
86 KOG2739 Leucine-rich acidic nu 96.4 0.0013 2.9E-08 63.1 1.4 81 369-449 62-151 (260)
87 TIGR02903 spore_lon_C ATP-depe 96.3 0.0083 1.8E-07 67.4 7.5 134 19-173 154-327 (615)
88 KOG2123 Uncharacterized conser 96.3 0.00056 1.2E-08 65.8 -1.8 98 343-447 18-123 (388)
89 PRK13342 recombination factor 96.3 0.019 4.1E-07 61.6 9.7 106 20-175 13-126 (413)
90 PRK00440 rfc replication facto 96.2 0.041 9E-07 56.8 11.2 53 7-62 5-61 (319)
91 PF00308 Bac_DnaA: Bacterial d 96.1 0.01 2.2E-07 57.5 6.0 120 22-178 12-140 (219)
92 KOG2123 Uncharacterized conser 96.1 0.00047 1E-08 66.3 -3.2 102 369-472 16-124 (388)
93 KOG2227 Pre-initiation complex 95.9 0.032 6.9E-07 58.2 8.3 138 16-174 147-293 (529)
94 PRK08116 hypothetical protein; 95.8 0.023 4.9E-07 56.9 7.0 100 43-178 117-221 (268)
95 COG2256 MGS1 ATPase related to 95.8 0.07 1.5E-06 54.7 10.2 112 14-178 25-141 (436)
96 PRK10536 hypothetical protein; 95.8 0.049 1.1E-06 53.3 8.7 42 19-62 55-97 (262)
97 COG2909 MalT ATP-dependent tra 95.7 0.24 5.2E-06 55.7 14.9 139 27-187 23-179 (894)
98 PF05621 TniB: Bacterial TniB 95.7 0.057 1.2E-06 53.9 9.2 115 19-150 34-156 (302)
99 PRK12402 replication factor C 95.7 0.064 1.4E-06 55.9 10.2 41 19-62 15-59 (337)
100 cd01133 F1-ATPase_beta F1 ATP 95.7 0.031 6.7E-07 55.4 7.2 102 41-160 70-184 (274)
101 PRK13341 recombination factor 95.6 0.053 1.1E-06 61.8 9.9 40 19-61 28-74 (725)
102 PRK06893 DNA replication initi 95.6 0.013 2.8E-07 57.3 4.3 38 141-178 93-134 (229)
103 TIGR03420 DnaA_homol_Hda DnaA 95.5 0.014 3.1E-07 57.0 4.3 40 23-62 21-61 (226)
104 KOG2028 ATPase related to the 95.5 0.045 9.8E-07 55.1 7.5 94 42-178 161-259 (554)
105 PRK07003 DNA polymerase III su 95.5 0.064 1.4E-06 60.1 9.5 42 20-61 17-60 (830)
106 PRK08118 topology modulation p 95.4 0.0064 1.4E-07 56.2 1.4 33 42-84 3-37 (167)
107 PRK06645 DNA polymerase III su 95.4 0.083 1.8E-06 57.6 9.9 43 20-62 22-66 (507)
108 PRK08727 hypothetical protein; 95.4 0.053 1.2E-06 53.1 7.7 17 45-61 43-63 (233)
109 PRK05564 DNA polymerase III su 95.3 0.16 3.5E-06 52.3 11.6 123 20-178 5-133 (313)
110 PHA02544 44 clamp loader, smal 95.3 0.097 2.1E-06 54.0 9.9 53 9-61 11-65 (316)
111 PRK14963 DNA polymerase III su 95.3 0.019 4.2E-07 62.6 4.8 134 20-176 15-154 (504)
112 PF13306 LRR_5: Leucine rich r 95.1 0.051 1.1E-06 47.6 5.9 78 369-449 9-89 (129)
113 PF00560 LRR_1: Leucine Rich R 95.0 0.011 2.3E-07 34.0 1.0 18 397-414 2-19 (22)
114 TIGR01242 26Sp45 26S proteasom 95.0 0.12 2.6E-06 54.5 9.5 44 19-62 122-179 (364)
115 TIGR00635 ruvB Holliday juncti 95.0 0.056 1.2E-06 55.5 6.8 44 19-62 4-53 (305)
116 PRK08181 transposase; Validate 94.9 0.096 2.1E-06 52.2 8.0 20 42-61 108-128 (269)
117 PLN03025 replication factor C 94.8 0.13 2.7E-06 53.2 9.1 40 19-61 13-56 (319)
118 PRK14949 DNA polymerase III su 94.7 0.18 3.8E-06 57.9 10.3 43 20-62 17-61 (944)
119 PRK14960 DNA polymerase III su 94.7 0.17 3.6E-06 56.2 9.8 42 20-61 16-59 (702)
120 PRK14961 DNA polymerase III su 94.7 0.18 4E-06 53.0 9.9 43 20-62 17-61 (363)
121 TIGR00362 DnaA chromosomal rep 94.6 0.13 2.7E-06 55.2 8.7 96 44-176 137-240 (405)
122 PRK12323 DNA polymerase III su 94.6 0.21 4.6E-06 55.3 10.2 42 20-61 17-60 (700)
123 PRK00149 dnaA chromosomal repl 94.4 0.14 3.1E-06 55.6 8.4 97 44-177 149-253 (450)
124 PRK08691 DNA polymerase III su 94.3 0.27 5.9E-06 55.0 10.5 42 20-61 17-60 (709)
125 PRK14957 DNA polymerase III su 94.3 0.28 6E-06 54.0 10.5 42 20-61 17-60 (546)
126 PF13306 LRR_5: Leucine rich r 94.3 0.097 2.1E-06 45.7 5.9 57 391-449 8-66 (129)
127 PF07693 KAP_NTPase: KAP famil 94.1 0.36 7.8E-06 50.0 10.7 39 25-63 2-44 (325)
128 COG1373 Predicted ATPase (AAA+ 94.0 0.3 6.5E-06 51.9 9.8 38 139-178 94-131 (398)
129 PRK09183 transposase/IS protei 93.9 0.18 3.8E-06 50.3 7.3 20 43-62 105-125 (259)
130 PRK08939 primosomal protein Dn 93.9 0.2 4.3E-06 51.2 7.8 115 23-176 135-259 (306)
131 KOG3864 Uncharacterized conser 93.8 0.0089 1.9E-07 55.3 -1.8 87 542-629 102-190 (221)
132 PRK14956 DNA polymerase III su 93.8 0.19 4.1E-06 53.9 7.8 43 20-62 19-63 (484)
133 PRK06526 transposase; Provisio 93.8 0.11 2.4E-06 51.4 5.7 21 42-62 100-121 (254)
134 PRK12608 transcription termina 93.8 0.19 4.1E-06 52.1 7.4 105 27-150 119-231 (380)
135 PRK14088 dnaA chromosomal repl 93.8 0.24 5.3E-06 53.4 8.7 96 43-176 133-235 (440)
136 PRK12377 putative replication 93.8 0.23 4.9E-06 48.9 7.7 70 43-150 104-174 (248)
137 PRK04195 replication factor C 93.7 0.25 5.3E-06 54.2 8.7 45 18-62 13-62 (482)
138 PRK14969 DNA polymerase III su 93.5 0.5 1.1E-05 52.2 10.7 42 20-61 17-60 (527)
139 PF00560 LRR_1: Leucine Rich R 93.5 0.041 8.9E-07 31.5 1.2 22 373-394 1-22 (22)
140 TIGR02639 ClpA ATP-dependent C 93.4 0.096 2.1E-06 60.5 5.3 42 20-61 183-225 (731)
141 PRK14951 DNA polymerase III su 93.4 0.41 8.9E-06 53.5 9.9 42 20-61 17-60 (618)
142 TIGR03346 chaperone_ClpB ATP-d 93.3 0.34 7.4E-06 57.0 9.7 43 19-61 565-617 (852)
143 smart00382 AAA ATPases associa 93.3 0.34 7.4E-06 42.5 7.7 19 45-63 4-26 (148)
144 PRK14087 dnaA chromosomal repl 93.2 0.2 4.2E-06 54.2 6.9 100 42-176 143-247 (450)
145 PF05673 DUF815: Protein of un 93.2 0.55 1.2E-05 45.5 9.1 48 16-63 24-76 (249)
146 TIGR02880 cbbX_cfxQ probable R 93.2 0.37 8E-06 48.7 8.5 42 20-61 23-80 (284)
147 COG0593 DnaA ATPase involved i 93.0 0.24 5.2E-06 51.9 6.9 96 43-176 113-216 (408)
148 CHL00095 clpC Clp protease ATP 93.0 0.085 1.9E-06 61.7 4.0 42 20-61 180-222 (821)
149 PRK14086 dnaA chromosomal repl 93.0 0.32 6.8E-06 53.9 8.0 93 46-177 317-419 (617)
150 PRK06696 uridine kinase; Valid 92.9 0.11 2.4E-06 50.5 4.0 38 24-61 3-44 (223)
151 PRK14958 DNA polymerase III su 92.9 0.53 1.2E-05 51.7 9.7 42 20-61 17-60 (509)
152 PRK07994 DNA polymerase III su 92.9 0.52 1.1E-05 52.9 9.6 43 20-62 17-61 (647)
153 TIGR03345 VI_ClpV1 type VI sec 92.8 0.29 6.2E-06 57.3 8.0 43 19-61 566-618 (852)
154 TIGR02639 ClpA ATP-dependent C 92.7 0.25 5.5E-06 57.1 7.3 114 19-164 454-579 (731)
155 PRK08084 DNA replication initi 92.6 0.29 6.3E-06 48.0 6.6 19 44-62 46-68 (235)
156 PRK14970 DNA polymerase III su 92.5 0.64 1.4E-05 49.1 9.4 41 20-62 18-62 (367)
157 PRK07261 topology modulation p 92.5 0.24 5.3E-06 45.9 5.5 21 42-62 2-23 (171)
158 KOG3864 Uncharacterized conser 92.5 0.028 6.1E-07 52.0 -0.7 82 489-574 103-185 (221)
159 PRK07952 DNA replication prote 92.3 0.62 1.3E-05 45.8 8.4 77 43-156 102-180 (244)
160 PRK14964 DNA polymerase III su 92.2 0.79 1.7E-05 49.7 9.7 42 20-61 14-57 (491)
161 TIGR02640 gas_vesic_GvpN gas v 92.1 0.86 1.9E-05 45.5 9.3 35 25-61 8-43 (262)
162 PF02562 PhoH: PhoH-like prote 92.1 0.11 2.4E-06 49.3 2.7 134 21-174 2-152 (205)
163 PF01695 IstB_IS21: IstB-like 92.0 0.13 2.7E-06 48.1 3.0 22 42-63 49-71 (178)
164 PRK05896 DNA polymerase III su 92.0 0.73 1.6E-05 51.0 9.2 42 20-61 17-60 (605)
165 PRK12422 chromosomal replicati 92.0 0.33 7.2E-06 52.3 6.5 94 45-177 143-244 (445)
166 PRK10865 protein disaggregatio 91.9 0.57 1.2E-05 55.1 8.9 42 20-61 569-620 (857)
167 COG0572 Udk Uridine kinase [Nu 91.9 0.29 6.3E-06 46.5 5.2 20 42-61 7-30 (218)
168 PRK00080 ruvB Holliday junctio 91.8 0.5 1.1E-05 49.0 7.6 45 18-62 24-74 (328)
169 PRK06305 DNA polymerase III su 91.8 0.87 1.9E-05 49.3 9.5 42 20-61 18-61 (451)
170 CHL00181 cbbX CbbX; Provisiona 91.7 0.75 1.6E-05 46.6 8.5 42 20-61 24-81 (287)
171 COG1875 NYN ribonuclease and A 91.7 0.22 4.7E-06 50.6 4.3 39 20-58 225-264 (436)
172 PF13504 LRR_7: Leucine rich r 91.3 0.13 2.9E-06 27.3 1.4 11 397-407 3-13 (17)
173 CHL00095 clpC Clp protease ATP 91.3 0.76 1.6E-05 54.0 9.1 117 19-164 509-637 (821)
174 COG2607 Predicted ATPase (AAA+ 91.3 1.9 4.2E-05 41.4 9.9 115 17-179 58-184 (287)
175 PRK10865 protein disaggregatio 91.2 0.24 5.3E-06 58.0 4.9 42 20-61 179-221 (857)
176 TIGR00602 rad24 checkpoint pro 91.2 0.61 1.3E-05 52.3 7.7 45 17-61 82-132 (637)
177 PRK11034 clpA ATP-dependent Cl 91.1 0.22 4.7E-06 57.2 4.2 42 20-61 187-229 (758)
178 PRK14962 DNA polymerase III su 91.0 1.3 2.8E-05 48.2 9.9 41 20-62 15-59 (472)
179 PRK06835 DNA replication prote 91.0 0.47 1E-05 48.9 6.2 21 42-62 185-206 (329)
180 TIGR03346 chaperone_ClpB ATP-d 91.0 0.28 6.1E-06 57.7 5.2 42 20-61 174-216 (852)
181 PF13504 LRR_7: Leucine rich r 90.9 0.17 3.7E-06 26.9 1.5 17 372-388 1-17 (17)
182 PRK07471 DNA polymerase III su 90.8 0.46 1E-05 49.8 6.1 43 19-61 19-63 (365)
183 PRK09111 DNA polymerase III su 90.8 0.56 1.2E-05 52.4 7.1 44 19-62 24-69 (598)
184 PF00004 AAA: ATPase family as 90.8 1.2 2.5E-05 38.8 7.9 15 47-61 5-20 (132)
185 smart00763 AAA_PrkA PrkA AAA d 90.6 0.21 4.5E-06 51.5 3.1 44 20-63 52-102 (361)
186 TIGR03689 pup_AAA proteasome A 90.2 0.54 1.2E-05 51.3 6.1 44 19-62 182-239 (512)
187 PRK06921 hypothetical protein; 90.0 0.99 2.1E-05 45.1 7.4 21 42-62 119-140 (266)
188 PRK07940 DNA polymerase III su 90.0 0.63 1.4E-05 49.2 6.3 42 138-179 116-158 (394)
189 cd03281 ABC_MSH5_euk MutS5 hom 89.9 0.53 1.2E-05 45.3 5.3 19 43-61 29-51 (213)
190 PF05496 RuvB_N: Holliday junc 89.8 1.1 2.3E-05 43.0 7.0 42 20-61 25-72 (233)
191 PRK14955 DNA polymerase III su 89.8 2 4.3E-05 45.8 10.0 40 20-61 17-60 (397)
192 COG1484 DnaC DNA replication p 89.6 1.3 2.8E-05 44.0 7.7 83 42-162 107-196 (254)
193 PRK07667 uridine kinase; Provi 89.5 0.43 9.2E-06 45.3 4.1 33 28-61 3-39 (193)
194 PRK05642 DNA replication initi 89.4 1.9 4E-05 42.3 8.7 37 142-178 100-140 (234)
195 PRK08927 fliI flagellum-specif 89.3 1.4 3E-05 47.1 8.1 95 44-159 159-268 (442)
196 KOG0473 Leucine-rich repeat pr 89.3 0.01 2.2E-07 56.0 -6.8 81 369-449 39-119 (326)
197 KOG3308 Uncharacterized protei 89.2 0.29 6.4E-06 45.4 2.6 68 42-116 3-80 (225)
198 PRK07764 DNA polymerase III su 89.2 2.2 4.8E-05 49.6 10.4 43 20-62 16-60 (824)
199 PRK14950 DNA polymerase III su 89.1 2.3 5E-05 47.8 10.3 42 20-61 17-60 (585)
200 PF13207 AAA_17: AAA domain; P 89.0 0.26 5.7E-06 42.5 2.2 17 45-61 1-21 (121)
201 PF13604 AAA_30: AAA domain; P 89.0 0.46 1E-05 45.1 4.0 34 139-174 93-127 (196)
202 cd00561 CobA_CobO_BtuR ATP:cor 88.9 1.6 3.5E-05 39.6 7.2 51 129-179 84-139 (159)
203 PRK09112 DNA polymerase III su 88.9 0.76 1.6E-05 47.9 5.9 44 19-62 23-68 (351)
204 PTZ00301 uridine kinase; Provi 88.9 0.31 6.7E-06 46.7 2.7 20 42-61 2-25 (210)
205 cd03247 ABCC_cytochrome_bd The 88.7 2.8 6E-05 39.0 9.0 49 130-178 107-157 (178)
206 TIGR02881 spore_V_K stage V sp 88.6 2.2 4.7E-05 42.6 8.8 42 20-61 7-64 (261)
207 TIGR00678 holB DNA polymerase 88.5 4.3 9.4E-05 38.1 10.3 40 138-177 95-135 (188)
208 KOG0735 AAA+-type ATPase [Post 88.4 0.99 2.1E-05 49.9 6.3 71 43-150 434-505 (952)
209 cd01123 Rad51_DMC1_radA Rad51_ 88.4 2.3 4.9E-05 41.6 8.6 47 42-105 18-72 (235)
210 cd01131 PilT Pilus retraction 88.3 0.85 1.8E-05 43.4 5.3 46 129-178 64-109 (198)
211 COG4618 ArpD ABC-type protease 88.0 1.7 3.7E-05 46.3 7.6 48 129-176 480-531 (580)
212 PF00485 PRK: Phosphoribulokin 87.9 0.33 7.1E-06 46.1 2.2 17 45-61 1-21 (194)
213 TIGR02397 dnaX_nterm DNA polym 87.8 1.8 3.8E-05 45.4 8.0 41 20-62 15-59 (355)
214 KOG0924 mRNA splicing factor A 87.8 3 6.5E-05 45.9 9.3 122 27-177 360-509 (1042)
215 PRK14954 DNA polymerase III su 87.5 3 6.5E-05 46.9 9.7 42 20-61 17-60 (620)
216 TIGR02858 spore_III_AA stage I 87.5 4.2 9.1E-05 40.7 9.8 43 132-178 186-229 (270)
217 cd03214 ABC_Iron-Siderophores_ 87.4 2.3 5.1E-05 39.6 7.7 49 129-177 105-157 (180)
218 PTZ00454 26S protease regulato 87.3 2.4 5.2E-05 45.0 8.4 44 19-62 145-202 (398)
219 PRK08451 DNA polymerase III su 87.2 3.8 8.3E-05 45.0 10.1 42 20-61 15-58 (535)
220 PRK06002 fliI flagellum-specif 87.1 2.5 5.4E-05 45.2 8.3 20 44-63 166-189 (450)
221 PRK08149 ATP synthase SpaL; Va 86.9 2 4.3E-05 45.7 7.5 85 44-150 152-252 (428)
222 PRK08972 fliI flagellum-specif 86.7 3 6.5E-05 44.4 8.6 95 44-159 163-272 (444)
223 PF00006 ATP-synt_ab: ATP synt 86.6 2 4.2E-05 41.4 6.7 96 42-160 17-126 (215)
224 cd01132 F1_ATPase_alpha F1 ATP 86.4 3 6.6E-05 41.4 8.0 26 137-162 159-184 (274)
225 PRK12678 transcription termina 86.3 1.5 3.3E-05 47.8 6.3 89 44-150 417-514 (672)
226 cd01135 V_A-ATPase_B V/A-type 86.2 3.1 6.7E-05 41.4 8.0 103 41-160 70-187 (276)
227 KOG1514 Origin recognition com 86.2 2.9 6.3E-05 46.3 8.4 146 19-180 396-552 (767)
228 PRK07594 type III secretion sy 86.2 2.5 5.4E-05 45.1 7.8 20 44-63 156-179 (433)
229 COG1121 ZnuC ABC-type Mn/Zn tr 85.7 2.9 6.2E-05 41.0 7.3 78 102-179 118-200 (254)
230 PRK08903 DnaA regulatory inact 85.6 1.2 2.6E-05 43.3 4.9 61 1-62 1-65 (227)
231 PRK14953 DNA polymerase III su 85.5 6.4 0.00014 43.1 10.7 42 20-61 17-60 (486)
232 PRK14952 DNA polymerase III su 85.5 9 0.0002 42.8 12.0 43 20-62 14-58 (584)
233 PF14516 AAA_35: AAA-like doma 85.4 4.4 9.5E-05 42.0 9.2 111 15-150 7-138 (331)
234 PF12775 AAA_7: P-loop contain 85.3 0.47 1E-05 47.6 1.8 35 27-62 21-56 (272)
235 COG1124 DppF ABC-type dipeptid 85.3 2.9 6.2E-05 40.4 6.9 49 125-174 145-199 (252)
236 PRK14959 DNA polymerase III su 85.2 5.6 0.00012 44.5 10.2 43 20-62 17-61 (624)
237 PRK11034 clpA ATP-dependent Cl 85.1 1.6 3.6E-05 50.2 6.3 43 19-61 458-510 (758)
238 cd03282 ABC_MSH4_euk MutS4 hom 85.1 1.2 2.5E-05 42.7 4.3 19 43-61 29-51 (204)
239 PRK14965 DNA polymerase III su 85.0 6.6 0.00014 44.1 10.8 41 20-62 17-61 (576)
240 PF03205 MobB: Molybdopterin g 85.0 0.61 1.3E-05 41.6 2.2 19 44-62 1-23 (140)
241 TIGR03345 VI_ClpV1 type VI sec 84.9 0.7 1.5E-05 54.2 3.3 42 20-61 188-230 (852)
242 COG4608 AppF ABC-type oligopep 84.9 3.6 7.7E-05 40.5 7.5 117 42-174 41-167 (268)
243 PLN02348 phosphoribulokinase 84.8 1.4 3.1E-05 45.9 5.1 20 42-61 48-71 (395)
244 TIGR03498 FliI_clade3 flagella 84.8 3.1 6.8E-05 44.3 7.7 20 44-63 141-164 (418)
245 cd01129 PulE-GspE PulE/GspE Th 84.7 1.2 2.6E-05 44.5 4.4 32 129-161 139-170 (264)
246 PRK14971 DNA polymerase III su 84.7 5.9 0.00013 44.7 10.3 40 20-61 18-61 (614)
247 PF00158 Sigma54_activat: Sigm 84.7 1.7 3.7E-05 40.0 5.1 42 21-63 1-46 (168)
248 PTZ00185 ATPase alpha subunit; 84.7 5.6 0.00012 43.1 9.4 100 42-159 191-309 (574)
249 PRK13531 regulatory ATPase Rav 84.7 0.89 1.9E-05 48.8 3.6 41 19-61 20-61 (498)
250 TIGR01420 pilT_fam pilus retra 84.5 2.1 4.5E-05 44.6 6.3 44 129-176 185-228 (343)
251 PF13671 AAA_33: AAA domain; P 84.4 2.7 5.9E-05 37.2 6.3 17 45-61 4-21 (143)
252 PRK09099 type III secretion sy 84.4 3.3 7.1E-05 44.4 7.7 20 44-63 164-187 (441)
253 PRK09361 radB DNA repair and r 84.4 4 8.6E-05 39.6 7.9 43 42-104 22-68 (225)
254 cd01394 radB RadB. The archaea 84.3 3.7 8.1E-05 39.6 7.6 20 42-61 18-41 (218)
255 cd01136 ATPase_flagellum-secre 84.1 5.4 0.00012 41.0 8.8 85 44-150 70-170 (326)
256 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 84.0 3.2 7E-05 40.3 7.1 49 129-177 150-201 (224)
257 smart00369 LRR_TYP Leucine-ric 84.0 0.92 2E-05 27.0 2.0 18 395-412 2-19 (26)
258 smart00370 LRR Leucine-rich re 84.0 0.92 2E-05 27.0 2.0 18 395-412 2-19 (26)
259 PRK14948 DNA polymerase III su 83.9 4.8 0.0001 45.4 9.2 44 19-62 16-61 (620)
260 PRK12597 F0F1 ATP synthase sub 83.7 2.9 6.4E-05 45.0 7.0 91 42-150 145-248 (461)
261 PF03969 AFG1_ATPase: AFG1-lik 83.7 2.3 5E-05 44.5 6.1 22 42-63 64-86 (362)
262 PRK09270 nucleoside triphospha 83.5 1.3 2.8E-05 43.2 4.1 21 42-62 32-56 (229)
263 PRK05480 uridine/cytidine kina 83.5 0.81 1.8E-05 43.9 2.6 20 42-61 5-28 (209)
264 TIGR01040 V-ATPase_V1_B V-type 83.5 4.2 9.2E-05 43.4 8.0 101 41-159 142-267 (466)
265 TIGR03497 FliI_clade2 flagella 83.3 4.3 9.3E-05 43.2 8.0 21 43-63 137-161 (413)
266 PF14532 Sigma54_activ_2: Sigm 83.3 1.4 3.1E-05 39.0 3.9 41 139-179 69-111 (138)
267 PRK06647 DNA polymerase III su 83.2 8.1 0.00017 43.1 10.5 41 20-62 17-61 (563)
268 TIGR02030 BchI-ChlI magnesium 83.0 1.2 2.5E-05 46.2 3.6 43 19-61 4-47 (337)
269 PRK05541 adenylylsulfate kinas 83.0 1.7 3.6E-05 40.4 4.4 29 44-84 8-40 (176)
270 TIGR00235 udk uridine kinase. 83.0 0.92 2E-05 43.5 2.7 21 42-62 5-29 (207)
271 cd03263 ABC_subfamily_A The AB 82.8 2.6 5.7E-05 40.7 5.9 48 130-177 142-191 (220)
272 PRK08233 hypothetical protein; 82.6 0.96 2.1E-05 42.2 2.6 21 43-63 3-27 (182)
273 PRK15455 PrkA family serine pr 82.6 1.3 2.8E-05 48.5 3.8 41 20-61 77-125 (644)
274 PRK11608 pspF phage shock prot 82.5 2.3 4.9E-05 44.0 5.5 42 20-61 7-51 (326)
275 TIGR03496 FliI_clade1 flagella 82.4 4.9 0.00011 42.7 8.1 94 44-158 138-246 (411)
276 TIGR01241 FtsH_fam ATP-depende 82.4 4.2 9.1E-05 44.8 7.9 45 19-63 55-112 (495)
277 PRK09280 F0F1 ATP synthase sub 82.2 4.6 9.9E-05 43.4 7.7 91 41-150 145-249 (463)
278 cd03228 ABCC_MRP_Like The MRP 82.0 5.2 0.00011 36.9 7.3 47 131-177 106-154 (171)
279 PRK09544 znuC high-affinity zi 82.0 2.9 6.3E-05 41.4 5.9 48 130-177 129-180 (251)
280 cd03231 ABC_CcmA_heme_exporter 82.0 7.1 0.00015 37.1 8.4 50 130-179 134-186 (201)
281 cd01393 recA_like RecA is a b 82.0 6.7 0.00015 38.0 8.5 44 42-104 18-71 (226)
282 PRK03992 proteasome-activating 81.8 1.1 2.5E-05 47.5 3.1 43 19-61 131-187 (389)
283 KOG0473 Leucine-rich repeat pr 81.7 0.078 1.7E-06 50.2 -4.9 86 390-476 37-122 (326)
284 cd03237 ABC_RNaseL_inhibitor_d 81.6 8.7 0.00019 37.9 9.1 49 129-177 123-175 (246)
285 PRK07133 DNA polymerase III su 81.5 12 0.00025 42.8 10.9 42 20-61 19-62 (725)
286 TIGR01041 ATP_syn_B_arch ATP s 81.4 5.5 0.00012 42.9 8.1 102 42-160 143-259 (458)
287 PRK06936 type III secretion sy 81.4 7.3 0.00016 41.6 8.8 93 44-159 163-272 (439)
288 KOG4308 LRR-containing protein 81.3 0.016 3.6E-07 62.6 -11.1 199 374-577 89-330 (478)
289 COG1428 Deoxynucleoside kinase 81.3 1 2.2E-05 42.5 2.2 21 43-63 4-28 (216)
290 PRK05439 pantothenate kinase; 81.3 1.8 4E-05 44.0 4.2 21 41-61 84-108 (311)
291 cd02025 PanK Pantothenate kina 81.3 0.79 1.7E-05 44.4 1.5 17 45-61 1-21 (220)
292 cd03238 ABC_UvrA The excision 81.2 7.9 0.00017 35.9 8.1 48 130-177 96-148 (176)
293 PRK05922 type III secretion sy 81.2 7.9 0.00017 41.4 9.0 23 137-159 245-267 (434)
294 PLN00020 ribulose bisphosphate 80.9 5.5 0.00012 41.3 7.4 31 32-62 137-171 (413)
295 PTZ00361 26 proteosome regulat 80.7 2.8 6.1E-05 45.0 5.6 43 19-61 183-239 (438)
296 smart00370 LRR Leucine-rich re 80.7 1.4 3.1E-05 26.1 2.0 21 417-437 1-21 (26)
297 smart00369 LRR_TYP Leucine-ric 80.7 1.4 3.1E-05 26.1 2.0 21 417-437 1-21 (26)
298 cd01120 RecA-like_NTPases RecA 80.6 2.8 6E-05 37.9 4.9 16 46-61 5-21 (165)
299 COG1763 MobB Molybdopterin-gua 80.6 1.1 2.4E-05 40.7 2.1 19 43-61 2-24 (161)
300 cd02024 NRK1 Nicotinamide ribo 80.6 0.91 2E-05 42.6 1.6 18 45-62 1-22 (187)
301 PRK05688 fliI flagellum-specif 80.5 9.1 0.0002 41.1 9.2 23 137-159 256-278 (451)
302 KOG0734 AAA+-type ATPase conta 80.3 11 0.00024 40.6 9.5 45 19-63 304-361 (752)
303 COG3172 NadR Predicted ATPase/ 80.3 1.1 2.5E-05 40.0 2.0 19 43-61 8-30 (187)
304 COG0465 HflB ATP-dependent Zn 80.2 4.9 0.00011 44.5 7.2 67 17-93 148-227 (596)
305 PRK07721 fliI flagellum-specif 80.2 6.4 0.00014 42.3 8.0 21 43-63 158-182 (438)
306 COG0468 RecA RecA/RadA recombi 80.1 6.5 0.00014 39.3 7.5 87 41-150 58-152 (279)
307 TIGR03522 GldA_ABC_ATP gliding 80.0 6.2 0.00013 40.3 7.7 49 130-178 142-192 (301)
308 TIGR00554 panK_bact pantothena 80.0 2.2 4.7E-05 43.1 4.2 20 42-61 61-84 (290)
309 TIGR00150 HI0065_YjeE ATPase, 80.0 1.9 4.2E-05 37.8 3.4 20 44-63 23-46 (133)
310 PRK04296 thymidine kinase; Pro 79.9 2.7 5.8E-05 39.6 4.6 109 45-179 4-117 (190)
311 PF13238 AAA_18: AAA domain; P 79.9 1.1 2.4E-05 38.7 2.0 17 45-61 3-20 (129)
312 KOG3354 Gluconate kinase [Carb 79.9 4.4 9.6E-05 36.1 5.4 20 42-61 14-34 (191)
313 cd02019 NK Nucleoside/nucleoti 79.8 1.1 2.5E-05 34.2 1.7 16 46-61 2-21 (69)
314 cd03223 ABCD_peroxisomal_ALDP 79.7 13 0.00029 33.9 9.2 46 130-177 100-147 (166)
315 PLN02318 phosphoribulokinase/u 79.6 2.1 4.4E-05 47.2 4.1 28 33-61 56-87 (656)
316 COG0541 Ffh Signal recognition 79.6 26 0.00056 37.1 11.7 47 124-174 201-247 (451)
317 KOG4308 LRR-containing protein 79.4 0.02 4.4E-07 61.9 -11.1 205 346-552 89-329 (478)
318 smart00534 MUTSac ATPase domai 79.4 1.1 2.5E-05 42.0 1.9 17 45-61 1-21 (185)
319 TIGR03771 anch_rpt_ABC anchore 79.2 12 0.00025 36.3 9.0 49 129-177 121-172 (223)
320 PRK06547 hypothetical protein; 79.2 2.4 5.1E-05 39.3 3.9 21 42-62 14-38 (172)
321 PF08303 tRNA_lig_kinase: tRNA 79.1 0.83 1.8E-05 41.3 0.8 40 46-111 5-50 (168)
322 TIGR03305 alt_F1F0_F1_bet alte 79.1 6.2 0.00013 42.3 7.4 101 41-159 139-252 (449)
323 COG0488 Uup ATPase components 78.9 14 0.0003 40.8 10.3 45 129-174 161-207 (530)
324 PRK05986 cob(I)alamin adenolsy 78.9 7.4 0.00016 36.4 7.0 50 129-178 104-158 (191)
325 PRK10751 molybdopterin-guanine 78.9 1.5 3.3E-05 40.4 2.5 20 42-61 5-28 (173)
326 cd03216 ABC_Carb_Monos_I This 78.9 4.3 9.3E-05 37.1 5.5 48 130-177 91-141 (163)
327 PRK13765 ATP-dependent proteas 78.8 2.1 4.5E-05 48.2 4.0 74 19-113 31-105 (637)
328 TIGR02237 recomb_radB DNA repa 78.8 5.8 0.00013 37.9 6.7 87 42-150 11-108 (209)
329 cd03300 ABC_PotA_N PotA is an 78.8 4.1 8.9E-05 39.7 5.8 50 129-178 138-191 (232)
330 TIGR01026 fliI_yscN ATPase Fli 78.7 7.2 0.00016 41.9 7.9 20 44-63 164-187 (440)
331 cd02023 UMPK Uridine monophosp 78.6 1.1 2.5E-05 42.5 1.7 17 45-61 1-21 (198)
332 cd03246 ABCC_Protease_Secretio 78.5 5.9 0.00013 36.6 6.4 47 131-177 106-155 (173)
333 PRK14974 cell division protein 78.4 17 0.00037 37.6 10.3 20 42-61 139-162 (336)
334 PF07726 AAA_3: ATPase family 78.4 1.1 2.4E-05 38.8 1.3 26 44-81 3-29 (131)
335 cd02028 UMPK_like Uridine mono 78.3 1.2 2.7E-05 41.5 1.7 17 45-61 1-21 (179)
336 PRK13407 bchI magnesium chelat 78.3 1.9 4.1E-05 44.5 3.3 43 19-61 8-51 (334)
337 KOG0733 Nuclear AAA ATPase (VC 78.2 7.7 0.00017 42.5 7.7 92 18-150 189-293 (802)
338 cd03222 ABC_RNaseL_inhibitor T 78.2 11 0.00023 35.1 8.0 33 130-162 80-114 (177)
339 PRK07196 fliI flagellum-specif 77.9 10 0.00022 40.5 8.6 21 43-63 155-179 (434)
340 TIGR03324 alt_F1F0_F1_al alter 77.7 11 0.00023 41.0 8.7 97 42-159 164-274 (497)
341 PRK06217 hypothetical protein; 77.6 1.1 2.4E-05 41.9 1.3 22 42-63 3-25 (183)
342 PRK13894 conjugal transfer ATP 77.4 6.2 0.00013 40.5 6.7 39 129-169 209-247 (319)
343 PRK15429 formate hydrogenlyase 77.3 5.8 0.00013 45.7 7.2 45 19-63 376-423 (686)
344 KOG0927 Predicted transporter 77.1 9.9 0.00021 41.1 8.0 48 131-179 231-280 (614)
345 PF10662 PduV-EutP: Ethanolami 76.8 1.5 3.2E-05 39.0 1.7 22 42-63 3-25 (143)
346 PRK05563 DNA polymerase III su 76.8 27 0.00059 39.0 12.0 42 20-61 17-60 (559)
347 TIGR00708 cobA cob(I)alamin ad 76.7 9.5 0.00021 35.2 7.0 50 129-178 86-140 (173)
348 PRK13546 teichoic acids export 76.7 6.4 0.00014 39.3 6.5 48 130-177 152-202 (264)
349 PRK10646 ADP-binding protein; 76.7 3.7 8E-05 37.0 4.2 37 26-63 12-52 (153)
350 COG3267 ExeA Type II secretory 76.6 28 0.0006 34.1 10.2 96 42-160 53-153 (269)
351 smart00487 DEXDc DEAD-like hel 76.5 10 0.00022 35.1 7.7 37 140-179 129-171 (201)
352 PRK08472 fliI flagellum-specif 76.4 11 0.00024 40.4 8.3 23 137-159 244-266 (434)
353 COG1157 FliI Flagellar biosynt 76.2 7.5 0.00016 40.6 6.8 105 24-150 147-264 (441)
354 CHL00081 chlI Mg-protoporyphyr 76.2 2 4.4E-05 44.5 2.8 47 17-63 15-62 (350)
355 CHL00176 ftsH cell division pr 75.8 13 0.00029 42.0 9.3 44 19-62 183-239 (638)
356 PF00154 RecA: recA bacterial 75.7 7 0.00015 40.0 6.4 96 29-150 39-142 (322)
357 TIGR01243 CDC48 AAA family ATP 75.7 11 0.00024 43.7 9.0 43 19-61 178-234 (733)
358 TIGR02012 tigrfam_recA protein 75.5 5.1 0.00011 41.0 5.4 96 29-150 41-144 (321)
359 TIGR02868 CydC thiol reductant 75.5 9.5 0.00021 42.5 8.2 46 131-176 480-528 (529)
360 PRK06793 fliI flagellum-specif 75.4 8.1 0.00018 41.3 7.1 20 44-63 157-180 (432)
361 TIGR02974 phageshock_pspF psp 75.3 5.7 0.00012 41.1 5.9 43 21-63 1-46 (329)
362 cd01130 VirB11-like_ATPase Typ 75.3 2.5 5.4E-05 39.7 3.0 31 129-160 90-120 (186)
363 PF13521 AAA_28: AAA domain; P 75.1 1.7 3.6E-05 39.9 1.7 16 46-61 2-21 (163)
364 COG0470 HolB ATPase involved i 75.0 13 0.00028 38.2 8.5 43 20-62 2-47 (325)
365 cd03115 SRP The signal recogni 74.9 9.8 0.00021 35.0 6.9 17 45-61 2-22 (173)
366 PRK09281 F0F1 ATP synthase sub 74.9 9.3 0.0002 41.7 7.5 23 138-160 253-275 (502)
367 TIGR02239 recomb_RAD51 DNA rep 74.5 9.7 0.00021 39.1 7.2 65 28-111 82-154 (316)
368 TIGR02546 III_secr_ATP type II 74.2 15 0.00032 39.4 8.8 20 44-63 146-169 (422)
369 TIGR01817 nifA Nif-specific re 74.2 5.9 0.00013 44.1 6.1 47 17-63 194-243 (534)
370 CHL00059 atpA ATP synthase CF1 73.9 13 0.00028 40.2 8.1 97 41-160 142-254 (485)
371 PRK00625 shikimate kinase; Pro 73.9 1.8 3.9E-05 40.1 1.5 20 42-61 2-22 (173)
372 PRK09354 recA recombinase A; P 73.8 6.8 0.00015 40.5 5.8 97 28-150 45-149 (349)
373 PRK06820 type III secretion sy 73.6 8 0.00017 41.4 6.5 23 137-159 251-273 (440)
374 cd01134 V_A-ATPase_A V/A-type 73.5 15 0.00032 38.0 8.0 26 137-162 252-277 (369)
375 smart00367 LRR_CC Leucine-rich 73.5 2 4.3E-05 25.6 1.2 16 614-629 1-16 (26)
376 cd02021 GntK Gluconate kinase 73.5 1.9 4.1E-05 38.7 1.6 17 45-61 4-21 (150)
377 PRK04040 adenylate kinase; Pro 73.4 11 0.00024 35.5 6.8 19 43-61 5-24 (188)
378 cd03217 ABC_FeS_Assembly ABC-t 73.3 14 0.0003 35.1 7.6 49 129-177 112-163 (200)
379 PHA00729 NTP-binding motif con 73.2 2.8 6.1E-05 40.4 2.7 30 29-61 6-39 (226)
380 COG0563 Adk Adenylate kinase a 73.2 1.8 3.9E-05 40.3 1.4 21 42-62 2-23 (178)
381 cd00983 recA RecA is a bacter 73.2 6.1 0.00013 40.5 5.3 96 29-150 41-144 (325)
382 PRK13343 F0F1 ATP synthase sub 73.1 10 0.00022 41.3 7.2 95 42-159 164-274 (502)
383 TIGR02782 TrbB_P P-type conjug 72.9 9.5 0.00021 38.8 6.7 39 129-169 194-232 (299)
384 PRK10787 DNA-binding ATP-depen 72.7 3 6.5E-05 48.5 3.3 43 19-61 322-371 (784)
385 TIGR01069 mutS2 MutS2 family p 72.4 2.9 6.2E-05 48.5 3.1 39 138-176 401-443 (771)
386 PRK00771 signal recognition pa 72.4 26 0.00055 37.8 10.0 21 42-62 94-118 (437)
387 PRK03839 putative kinase; Prov 72.3 1.9 4.1E-05 40.2 1.4 20 43-62 3-23 (180)
388 COG0542 clpA ATP-binding subun 72.3 12 0.00026 42.9 7.7 115 19-165 491-620 (786)
389 PRK06762 hypothetical protein; 72.2 2.7 5.9E-05 38.5 2.4 18 44-61 3-24 (166)
390 PRK11889 flhF flagellar biosyn 72.2 42 0.00091 35.5 11.0 35 138-174 351-385 (436)
391 PRK04301 radA DNA repair and r 72.1 20 0.00044 36.9 9.0 65 29-112 89-161 (317)
392 PRK13833 conjugal transfer pro 72.0 12 0.00027 38.4 7.2 38 129-168 205-242 (323)
393 PRK13545 tagH teichoic acids e 72.0 11 0.00023 41.5 7.0 47 131-177 153-202 (549)
394 TIGR01039 atpD ATP synthase, F 71.9 17 0.00037 39.1 8.4 101 41-159 144-257 (461)
395 COG0542 clpA ATP-binding subun 71.7 3 6.6E-05 47.5 3.0 41 21-61 172-213 (786)
396 TIGR02238 recomb_DMC1 meiotic 71.7 16 0.00035 37.4 8.0 54 42-113 95-156 (313)
397 cd03285 ABC_MSH2_euk MutS2 hom 71.6 3 6.6E-05 40.4 2.6 20 42-61 29-52 (222)
398 PF02367 UPF0079: Uncharacteri 71.4 3.2 7E-05 35.9 2.4 22 42-63 14-39 (123)
399 TIGR00763 lon ATP-dependent pr 71.1 8.5 0.00018 45.0 6.6 42 20-61 321-369 (775)
400 cd00464 SK Shikimate kinase (S 71.1 2.3 4.9E-05 38.3 1.5 19 43-61 2-21 (154)
401 PRK04196 V-type ATP synthase s 70.9 13 0.00028 40.2 7.4 101 41-159 144-260 (460)
402 PF08423 Rad51: Rad51; InterP 70.7 7.6 0.00017 38.5 5.3 101 29-150 25-144 (256)
403 TIGR00073 hypB hydrogenase acc 70.6 3.2 7E-05 39.7 2.6 20 42-61 21-44 (207)
404 KOG1547 Septin CDC10 and relat 70.5 8.2 0.00018 37.0 5.0 44 20-63 25-70 (336)
405 PLN03187 meiotic recombination 70.4 15 0.00032 38.2 7.4 54 42-113 125-186 (344)
406 PRK07960 fliI flagellum-specif 70.2 10 0.00023 40.6 6.4 23 137-159 263-285 (455)
407 TIGR00962 atpA proton transloc 70.2 16 0.00035 39.9 8.0 95 42-159 163-273 (501)
408 TIGR03796 NHPM_micro_ABC1 NHPM 70.0 12 0.00027 43.3 7.7 56 131-187 625-685 (710)
409 PRK11174 cysteine/glutathione 70.0 15 0.00032 41.6 8.1 47 131-177 495-544 (588)
410 COG1158 Rho Transcription term 69.8 8.8 0.00019 38.8 5.3 103 28-148 160-269 (422)
411 TIGR00764 lon_rel lon-related 69.7 7 0.00015 44.1 5.3 73 19-113 18-92 (608)
412 cd03284 ABC_MutS1 MutS1 homolo 69.5 4.2 9.2E-05 39.2 3.1 18 44-61 31-52 (216)
413 PRK10867 signal recognition pa 69.5 16 0.00035 39.2 7.7 19 43-61 100-122 (433)
414 COG0714 MoxR-like ATPases [Gen 69.3 4.2 9.1E-05 42.2 3.2 40 20-61 25-65 (329)
415 KOG1969 DNA replication checkp 69.3 1.3E+02 0.0029 34.2 14.5 39 248-301 583-622 (877)
416 PRK05800 cobU adenosylcobinami 69.1 13 0.00029 34.2 6.2 79 46-150 4-87 (170)
417 cd03116 MobB Molybdenum is an 69.0 3.6 7.8E-05 37.5 2.4 18 44-61 2-23 (159)
418 TIGR01360 aden_kin_iso1 adenyl 69.0 3.3 7.1E-05 38.7 2.2 20 42-61 2-25 (188)
419 TIGR00176 mobB molybdopterin-g 68.9 2.9 6.2E-05 38.0 1.7 17 45-61 1-21 (155)
420 TIGR02768 TraA_Ti Ti-type conj 68.8 22 0.00047 41.4 9.1 34 139-174 439-473 (744)
421 PF10923 DUF2791: P-loop Domai 68.7 16 0.00034 38.8 7.3 89 12-117 18-115 (416)
422 COG2255 RuvB Holliday junction 68.6 4.5 9.8E-05 40.0 3.0 43 19-61 26-74 (332)
423 COG3899 Predicted ATPase [Gene 68.6 4.9 0.00011 47.3 3.9 41 21-61 2-46 (849)
424 COG4917 EutP Ethanolamine util 68.6 3.5 7.5E-05 35.3 1.9 22 42-63 3-25 (148)
425 PF06431 Polyoma_lg_T_C: Polyo 68.5 5.6 0.00012 40.8 3.7 38 23-61 136-177 (417)
426 TIGR03263 guanyl_kin guanylate 68.4 3.5 7.6E-05 38.3 2.3 19 44-62 2-24 (180)
427 cd03287 ABC_MSH3_euk MutS3 hom 68.4 2.9 6.3E-05 40.5 1.7 19 43-61 31-53 (222)
428 PF08433 KTI12: Chromatin asso 68.4 2.2 4.8E-05 42.6 0.9 37 124-162 57-96 (270)
429 PRK14490 putative bifunctional 68.2 4.2 9.2E-05 42.9 3.1 19 43-61 5-27 (369)
430 PRK00409 recombination and DNA 68.2 3.4 7.3E-05 48.1 2.5 39 138-176 406-448 (782)
431 TIGR00958 3a01208 Conjugate Tr 68.2 22 0.00048 41.2 9.1 45 132-177 628-674 (711)
432 PLN02796 D-glycerate 3-kinase 68.1 3.4 7.4E-05 42.5 2.2 22 42-63 99-124 (347)
433 PRK08099 bifunctional DNA-bind 68.1 3.1 6.8E-05 44.2 2.0 21 42-62 218-242 (399)
434 COG1123 ATPase components of v 67.8 8.6 0.00019 42.0 5.2 126 45-177 37-214 (539)
435 TIGR01193 bacteriocin_ABC ABC- 67.7 14 0.00031 42.8 7.5 49 130-178 620-670 (708)
436 COG0488 Uup ATPase components 67.6 31 0.00067 38.2 9.6 45 129-174 447-493 (530)
437 PRK00131 aroK shikimate kinase 67.5 2.9 6.4E-05 38.4 1.5 19 43-61 7-26 (175)
438 PRK14722 flhF flagellar biosyn 67.5 28 0.0006 36.6 8.8 19 43-61 137-159 (374)
439 TIGR01650 PD_CobS cobaltochela 67.5 9.5 0.00021 39.0 5.2 35 25-61 51-86 (327)
440 PF00005 ABC_tran: ABC transpo 67.4 4.1 8.9E-05 35.8 2.4 19 45-63 13-35 (137)
441 PF08298 AAA_PrkA: PrkA AAA do 67.4 5.1 0.00011 41.2 3.3 43 19-61 61-110 (358)
442 KOG1051 Chaperone HSP104 and r 67.2 32 0.00069 40.2 9.8 113 20-164 563-686 (898)
443 TIGR03819 heli_sec_ATPase heli 67.2 5.6 0.00012 41.3 3.6 39 129-169 243-281 (340)
444 PRK07399 DNA polymerase III su 67.1 32 0.00069 35.3 9.1 42 20-61 5-48 (314)
445 COG2274 SunT ABC-type bacterio 67.1 18 0.0004 41.5 7.9 58 130-187 618-681 (709)
446 COG0802 Predicted ATPase or ki 66.9 6.7 0.00015 34.9 3.5 37 26-63 9-49 (149)
447 TIGR02236 recomb_radA DNA repa 66.9 21 0.00045 36.6 7.8 60 29-106 82-149 (310)
448 TIGR03172 probable selenium-de 66.8 3.3 7.2E-05 40.2 1.7 18 45-62 1-20 (232)
449 PRK05057 aroK shikimate kinase 66.8 3.1 6.7E-05 38.5 1.5 20 42-61 6-26 (172)
450 TIGR01243 CDC48 AAA family ATP 66.6 32 0.0007 40.0 10.1 44 19-62 453-510 (733)
451 PF13177 DNA_pol3_delta2: DNA 66.5 46 0.00099 30.3 9.2 41 139-179 102-143 (162)
452 COG1131 CcmA ABC-type multidru 66.3 16 0.00034 37.2 6.6 46 131-176 146-195 (293)
453 PF00009 GTP_EFTU: Elongation 66.2 5.1 0.00011 37.6 2.9 22 42-63 2-27 (188)
454 TIGR03375 type_I_sec_LssB type 66.1 17 0.00038 41.9 7.8 48 130-177 610-660 (694)
455 TIGR00959 ffh signal recogniti 66.1 41 0.00088 36.1 9.9 19 43-61 99-121 (428)
456 cd02029 PRK_like Phosphoribulo 66.0 11 0.00023 37.4 5.1 17 45-61 1-21 (277)
457 PF00437 T2SE: Type II/IV secr 65.9 3.8 8.3E-05 41.0 2.1 43 129-176 187-230 (270)
458 COG3265 GntK Gluconate kinase 65.8 9.8 0.00021 33.8 4.2 16 46-61 1-17 (161)
459 PRK11388 DNA-binding transcrip 65.7 10 0.00023 43.3 5.8 45 19-63 325-372 (638)
460 cd02020 CMPK Cytidine monophos 65.7 3.7 8E-05 36.5 1.8 17 45-61 1-21 (147)
461 PLN03046 D-glycerate 3-kinase; 65.6 4.1 9E-05 42.9 2.3 20 42-61 211-234 (460)
462 PRK14721 flhF flagellar biosyn 65.5 45 0.00097 35.7 10.0 38 138-177 300-337 (420)
463 cd02026 PRK Phosphoribulokinas 65.5 3.5 7.6E-05 41.3 1.7 17 45-61 1-21 (273)
464 PF00448 SRP54: SRP54-type pro 65.3 11 0.00023 35.8 4.9 20 44-63 2-25 (196)
465 PRK13949 shikimate kinase; Pro 65.1 3.5 7.5E-05 38.1 1.5 20 43-62 4-24 (169)
466 PRK02118 V-type ATP synthase s 64.9 34 0.00073 36.6 8.9 99 41-160 141-252 (436)
467 PRK14493 putative bifunctional 64.8 4.5 9.7E-05 40.5 2.3 18 44-61 2-23 (274)
468 PRK00889 adenylylsulfate kinas 64.8 5 0.00011 37.1 2.5 18 44-61 5-26 (175)
469 cd03286 ABC_MSH6_euk MutS6 hom 64.5 2.6 5.6E-05 40.7 0.5 20 43-62 30-53 (218)
470 cd00071 GMPK Guanosine monopho 64.5 5.2 0.00011 35.4 2.4 17 46-62 2-22 (137)
471 PRK14489 putative bifunctional 64.5 6.4 0.00014 41.4 3.5 20 42-61 204-227 (366)
472 PLN03232 ABC transporter C fam 64.5 21 0.00045 45.2 8.5 58 130-187 749-813 (1495)
473 PF08477 Miro: Miro-like prote 64.3 5 0.00011 34.1 2.2 18 46-63 2-23 (119)
474 PRK00279 adk adenylate kinase; 64.1 15 0.00031 35.4 5.7 20 43-62 3-23 (215)
475 PLN02924 thymidylate kinase 64.0 24 0.00052 34.1 7.1 22 42-63 15-40 (220)
476 PRK10463 hydrogenase nickel in 63.9 9 0.00019 38.5 4.2 20 42-61 103-126 (290)
477 PRK13409 putative ATPase RIL; 63.9 14 0.0003 41.6 6.2 116 45-177 367-513 (590)
478 PRK11545 gntK gluconate kinase 63.7 2.4 5.3E-05 38.8 0.2 16 46-61 1-17 (163)
479 KOG0927 Predicted transporter 63.5 19 0.00041 39.1 6.6 149 21-175 396-564 (614)
480 PRK05201 hslU ATP-dependent pr 63.4 5.2 0.00011 42.3 2.5 44 19-62 15-73 (443)
481 cd00544 CobU Adenosylcobinamid 63.3 22 0.00047 32.8 6.4 80 45-150 4-84 (169)
482 COG2812 DnaX DNA polymerase II 63.1 18 0.00038 39.6 6.5 42 20-61 17-60 (515)
483 PRK00300 gmk guanylate kinase; 62.8 4.9 0.00011 38.3 2.1 20 44-63 6-29 (205)
484 PRK13947 shikimate kinase; Pro 62.8 4.1 8.8E-05 37.5 1.5 19 43-61 4-23 (171)
485 TIGR02902 spore_lonB ATP-depen 62.5 6.2 0.00013 43.8 3.1 43 20-62 66-109 (531)
486 TIGR00390 hslU ATP-dependent p 62.4 14 0.00029 39.3 5.3 44 19-62 12-70 (441)
487 TIGR02322 phosphon_PhnN phosph 62.4 5.4 0.00012 37.1 2.2 19 45-63 3-25 (179)
488 PRK07560 elongation factor EF- 62.2 7.1 0.00015 45.3 3.6 39 23-63 1-44 (731)
489 PRK05022 anaerobic nitric oxid 62.0 17 0.00036 40.3 6.3 46 18-63 186-234 (509)
490 cd03229 ABC_Class3 This class 62.0 5.7 0.00012 36.9 2.3 48 130-177 109-160 (178)
491 COG0396 sufC Cysteine desulfur 61.8 49 0.0011 32.0 8.3 48 129-176 152-203 (251)
492 smart00364 LRR_BAC Leucine-ric 61.6 4.9 0.00011 24.0 1.1 17 396-412 3-19 (26)
493 PF00488 MutS_V: MutS domain V 61.6 1.2 2.5E-05 43.7 -2.5 40 138-178 121-166 (235)
494 PRK15453 phosphoribulokinase; 61.5 5.5 0.00012 39.8 2.2 20 42-61 4-27 (290)
495 COG1855 ATPase (PilT family) [ 61.5 6 0.00013 41.7 2.5 33 28-61 252-285 (604)
496 CHL00060 atpB ATP synthase CF1 61.5 31 0.00066 37.5 7.9 100 42-159 163-282 (494)
497 PRK14495 putative molybdopteri 61.4 5.3 0.00012 42.4 2.2 18 44-61 2-23 (452)
498 COG1672 Predicted ATPase (AAA+ 61.4 11 0.00024 39.6 4.6 41 20-63 3-47 (359)
499 PRK08058 DNA polymerase III su 61.3 61 0.0013 33.5 10.0 41 138-178 109-150 (329)
500 cd03225 ABC_cobalt_CbiO_domain 61.3 5.8 0.00013 38.0 2.3 47 131-177 144-193 (211)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=8.3e-66 Score=579.75 Aligned_cols=574 Identities=24% Similarity=0.326 Sum_probs=426.2
Q ss_pred cchhhcHHHHHHHHhcCCCCceEEEEEec----chhhHHHHHhcCCCccccCCCCcc-ccCCceeeccCCCcceEeCCCc
Q 037018 22 KTVKVKVKAVLVWLFMLDSMWLQFLTAVA----YKTAFVADIYNNNVDLSAMNPKLR-VPKRFINKAFPVAFPVDVNCAC 96 (663)
Q Consensus 22 ~G~~~~~~~i~~~L~~~~~~~~~vi~i~G----GKTtla~~v~~~~~~~~~~~~~~~-~~~~F~~~~~~~~~~v~vs~~~ 96 (663)
||.+..++++.+.|.+++. ++|||+| ||||||+.|||+. . ++.+||..+| |+||+.|
T Consensus 161 VG~e~~~~kl~~~L~~d~~---~iv~i~GMGGvGKTTL~~qi~N~~----------~~v~~~Fd~~iW-----V~VSk~f 222 (889)
T KOG4658|consen 161 VGLETMLEKLWNRLMEDDV---GIVGIYGMGGVGKTTLARQIFNKF----------DEVGNHFDGVIW-----VVVSKEF 222 (889)
T ss_pred ccHHHHHHHHHHHhccCCC---CEEEEECCCcccHHHHHHHHhccc----------chhcccCceEEE-----EEEcccc
Confidence 9999999999999999974 8999999 9999999999998 6 9999999999 9999999
Q ss_pred chhHHHHHHHHHHHhCCCCCcchhhhhHhhHHHHHHHHhhcCCcEEEEEeCCCCChhhHHHHHhhCCCCCCCceEEEEEe
Q 037018 97 NAQLNHILDDIIKSVMPPSRVNVIISEDYKLKTIILRDYLTNKKDFIVLDDVFDDREIWNDLEKFLPDNQNGSRVLILVT 176 (663)
Q Consensus 97 ~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~~l~~~L~~kr~LlVLDdv~~~~~~~~~l~~~~~~~~~gskIiiT~r 176 (663)
+ ..+++++|+..++..+..+.-.. .+++ +.+|.+.|++|||+|||||||+ ..+|+.++.++|...+||||++|||
T Consensus 223 ~--~~~iq~~Il~~l~~~~~~~~~~~-~~~~-~~~i~~~L~~krfllvLDDIW~-~~dw~~I~~~~p~~~~g~KvvlTTR 297 (889)
T KOG4658|consen 223 T--TRKIQQTILERLGLLDEEWEDKE-EDEL-ASKLLNLLEGKRFLLVLDDIWE-EVDWDKIGVPFPSRENGSKVVLTTR 297 (889)
T ss_pred c--HHhHHHHHHHHhccCCcccchhh-HHHH-HHHHHHHhccCceEEEEecccc-cccHHhcCCCCCCccCCeEEEEEec
Confidence 9 99999999999988654432222 3677 8999999999999999999999 9999999999999999999999999
Q ss_pred CCCCC-------ceEecc----------------------------ccccc-------hhHHHHHhhccc-cCChhhHHH
Q 037018 177 DPFLL-------TSFELE----------------------------HGEKI-------RLNSALVGGPLI-RIKYEGWQF 213 (663)
Q Consensus 177 ~~~~~-------~~~~l~----------------------------~~~~i-------Plal~~~g~~L~-~~~~~~W~~ 213 (663)
+..+. ..++++ +|+++ |||+.++|+.|+ |.+.++|+.
T Consensus 298 s~~V~~~~m~~~~~~~v~~L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~ 377 (889)
T KOG4658|consen 298 SEEVCGRAMGVDYPIEVECLTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRR 377 (889)
T ss_pred cHhhhhccccCCccccccccCccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHH
Confidence 76543 233333 33333 999999999999 988999999
Q ss_pred HHhhcCCCCCCCCcCCC---Chhhhhhhc-ceeCCCChhhHHHHhhhcccCCCceechHHHHHHHHHcCC-C----C---
Q 037018 214 FILHYGSMPLGSYFQGE---AMPTIWRHI-YSVMELPFHLKVCCLYLCVFRPSIEISTRQLYQLWVAEVS-K----R--- 281 (663)
Q Consensus 214 ~~~~~~~~~l~~~~~~~---~~~~i~~~l-~sy~~L~~~~k~cfl~~a~Fp~~~~i~~~~Li~~Wi~~g~-~----g--- 281 (663)
+.+. +.+....+ ..+.++.-+ +|||+||+++|.||+|||+||||++|++++||.+|+|||| + |
T Consensus 378 ~~~~-----l~s~~~~~~~~~~~~i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~ 452 (889)
T KOG4658|consen 378 ALNV-----LKSSLAADFSGMEESILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETA 452 (889)
T ss_pred HHcc-----ccccccCCCCchhhhhHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccch
Confidence 9999 87775444 235664555 9999999999999999999999999999999999999998 3 1
Q ss_pred --------------------CCCCccceEEcCHHHHHHHHHhcc-----cCceEEecCCC------ccCCCceeEEEEEe
Q 037018 282 --------------------RAGGTIKACYVPGFVYTSLFFMAG-----MMEFVWMPHMQ------LETLANVKRCFILE 330 (663)
Q Consensus 282 --------------------~~~~~~~~~~mhdll~dl~~~~~~-----~~~~~~~~~~~------~~~~~~~r~lsi~~ 330 (663)
...+...+|+|||++||+|.++|+ +++++...+.+ ...+..+|+++++.
T Consensus 453 ~d~G~~~i~~LV~~~Ll~~~~~~~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~ 532 (889)
T KOG4658|consen 453 EDVGYDYIEELVRASLLIEERDEGRKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMN 532 (889)
T ss_pred hcchHHHHHHHHHHHHHhhcccccceeEEEeeHHHHHHHHHHhccccccccceEEECCcCccccccccchhheeEEEEec
Confidence 112567899999999999999999 66655444311 33456789999999
Q ss_pred cccccccccccC-CCcccEEEeecCccccccccch-hHHhcCCCcccEEEecCCc-CcccCccCCCCCCcCeEeccCCCC
Q 037018 331 DLIDEFISLEHS-DMYLQSFLNHTLESDRLALIDC-ENFCKKFKHLRVLNLGSAI-LYQYPPGLENLFHLKYLKLNIPSL 407 (663)
Q Consensus 331 ~~~~~~~~~~~~-~~~lr~L~l~~~~~~~~~~~~l-~~~~~~l~~Lr~L~L~~~~-l~~lp~~~~~l~~L~~L~L~~~~i 407 (663)
+.+.... ... ++++++|.+.++... ...+ .+||..+|.||+|||++|. +..+|..++.+.+||||+++++.+
T Consensus 533 ~~~~~~~--~~~~~~~L~tLll~~n~~~---l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I 607 (889)
T KOG4658|consen 533 NKIEHIA--GSSENPKLRTLLLQRNSDW---LLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGI 607 (889)
T ss_pred cchhhcc--CCCCCCccceEEEeecchh---hhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCc
Confidence 9866665 455 789999999998630 1234 6777999999999999877 779999999999999999999999
Q ss_pred ccchhhhcccccccEeeccCC-cccccchhhhcCcCCcEEEccCCCC--CCCCCCCcCCCCCCcEeeCcCCCCCChhhcC
Q 037018 408 NCLPSLLCTLLNLQTLEMPAS-YIDHSPEGIWMMQKLMHLNFGSINL--PAPPKNYSSSLKNLIFISSLNPSSCTPDILG 484 (663)
Q Consensus 408 ~~lp~~i~~L~~L~~L~L~~~-~l~~lp~~l~~l~~L~~L~l~~~~~--~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~ 484 (663)
..+|..+++|+.|.+|++..+ .+..+|.....+++|++|.+..... .......+..+.+|+.+.....+..+...+.
T Consensus 608 ~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~ 687 (889)
T KOG4658|consen 608 SHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSVLLLEDLL 687 (889)
T ss_pred cccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchhHhHhhhh
Confidence 999999999999999999999 6677776677799999999983321 1122222334444444443322221112223
Q ss_pred CCCCcc----EEEeecCCCccccchhhhhcCCCCCCEEEEeecCccc--------------------------ccccccc
Q 037018 485 RLPNVQ----TLRISGDLSHYHSGVSKSLCELHKLECLQLVHEGRMW--------------------------QLSRMVL 534 (663)
Q Consensus 485 ~l~~L~----~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~--------------------------~lp~~~~ 534 (663)
.+++|+ .+.+.++ .....+..+..+.+|+.|.+.+|+..+ ..|.+++
T Consensus 688 ~~~~L~~~~~~l~~~~~---~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~ 764 (889)
T KOG4658|consen 688 GMTRLRSLLQSLSIEGC---SKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLT 764 (889)
T ss_pred hhHHHHHHhHhhhhccc---ccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccc
Confidence 333333 2222111 223334444455555555555533211 0011112
Q ss_pred ccccCCCCceEEEEecccCCCCChhhhcCCCCCcEEEeecCCCCCceeeecCCCCCCcccEEEccCCCCcccccccc---
Q 037018 535 SEYQFPPCLTQLSLSNTQLMEDPMPALEKLPHLEVLKLKQNSYSERKLACVGSGSFPQLKILHLKSMLWLEEWTMGA--- 611 (663)
Q Consensus 535 ~l~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~--- 611 (663)
|... .++|+.|.+..|...+.+++....+..+..+.+..+.+.+...... .++|+++..+.+.+ +.+..+....
T Consensus 765 ~~~f-~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~-l~~l~~i~~~~l~~-~~l~~~~ve~~p~ 841 (889)
T KOG4658|consen 765 WLLF-APHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGLRMLCS-LGGLPQLYWLPLSF-LKLEELIVEECPK 841 (889)
T ss_pred hhhc-cCcccEEEEecccccccCCCHHHHhhhcccEEecccccccceeeec-CCCCceeEecccCc-cchhheehhcCcc
Confidence 4444 7888888888887777777777777777776776666666533333 56777777777776 3455554443
Q ss_pred -ccccccceEEeecC-CCCCCCccc
Q 037018 612 -GAMPKLESLIVNPC-AYLRKLPEE 634 (663)
Q Consensus 612 -~~l~~L~~L~l~~c-~~l~~l~~~ 634 (663)
+.+|.+.++.+.+| ..+...|..
T Consensus 842 l~~~P~~~~~~i~~~~~~~~~~~~~ 866 (889)
T KOG4658|consen 842 LGKLPLLSTLTIVGCEEKLKEYPDG 866 (889)
T ss_pred cccCccccccceeccccceeecCCc
Confidence 66777777777776 555555543
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=1.2e-54 Score=515.64 Aligned_cols=583 Identities=17% Similarity=0.143 Sum_probs=352.8
Q ss_pred CccccccchhhcHHHHHHHHhcCCCCceEEEEEec----chhhHHHHHhcCCCccccCCCCccccCCceeeccCCCcceE
Q 037018 16 STSCSSKTVKVKVKAVLVWLFMLDSMWLQFLTAVA----YKTAFVADIYNNNVDLSAMNPKLRVPKRFINKAFPVAFPVD 91 (663)
Q Consensus 16 ~~~~~~~G~~~~~~~i~~~L~~~~~~~~~vi~i~G----GKTtla~~v~~~~~~~~~~~~~~~~~~~F~~~~~~~~~~v~ 91 (663)
.+...+||+++.++++..+|..+.. +++|||||| ||||||+++|+ ++..+|+..+|.....|.
T Consensus 181 ~~~~~~vG~~~~l~~l~~lL~l~~~-~~~vvgI~G~gGiGKTTLA~~l~~------------~l~~~F~g~vfv~~~~v~ 247 (1153)
T PLN03210 181 NDFEDFVGIEDHIAKMSSLLHLESE-EVRMVGIWGSSGIGKTTIARALFS------------RLSRQFQSSVFIDRAFIS 247 (1153)
T ss_pred cccccccchHHHHHHHHHHHccccC-ceEEEEEEcCCCCchHHHHHHHHH------------HHhhcCCeEEEeeccccc
Confidence 3445799999999999999976655 799999999 99999999999 888999988882111122
Q ss_pred eCCCc------ch--hHHHHHHHHHHHhCCCCCcchhhhhHhhHHHHHHHHhhcCCcEEEEEeCCCCChhhHHHHHhhCC
Q 037018 92 VNCAC------NA--QLNHILDDIIKSVMPPSRVNVIISEDYKLKTIILRDYLTNKKDFIVLDDVFDDREIWNDLEKFLP 163 (663)
Q Consensus 92 vs~~~------~~--~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~~l~~~L~~kr~LlVLDdv~~~~~~~~~l~~~~~ 163 (663)
.+... .+ ....++++++.++...... . ... ...+++++++||+||||||||+ .++|+.+.....
T Consensus 248 ~~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~---~--~~~--~~~~~~~L~~krvLLVLDdv~~-~~~l~~L~~~~~ 319 (1153)
T PLN03210 248 KSMEIYSSANPDDYNMKLHLQRAFLSEILDKKDI---K--IYH--LGAMEERLKHRKVLIFIDDLDD-QDVLDALAGQTQ 319 (1153)
T ss_pred cchhhcccccccccchhHHHHHHHHHHHhCCCCc---c--cCC--HHHHHHHHhCCeEEEEEeCCCC-HHHHHHHHhhCc
Confidence 21100 00 1235677777776554321 1 111 2457788999999999999999 999999999888
Q ss_pred CCCCCceEEEEEeCCCCC------ceEecc----------------------------------ccccchhHHHHHhhcc
Q 037018 164 DNQNGSRVLILVTDPFLL------TSFELE----------------------------------HGEKIRLNSALVGGPL 203 (663)
Q Consensus 164 ~~~~gskIiiT~r~~~~~------~~~~l~----------------------------------~~~~iPlal~~~g~~L 203 (663)
+.++|||||||||++..+ ++|+++ .+.++|||++++|+.|
T Consensus 320 ~~~~GsrIIiTTrd~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L 399 (1153)
T PLN03210 320 WFGSGSRIIVITKDKHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLGLNVLGSYL 399 (1153)
T ss_pred cCCCCcEEEEEeCcHHHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 889999999999976432 567766 2333399999999999
Q ss_pred ccCChhhHHHHHhhcCCCCCCCCcCCCChhhhhhhc-ceeCCCCh-hhHHHHhhhcccCCCceechHHHHHHHHHcCC-C
Q 037018 204 IRIKYEGWQFFILHYGSMPLGSYFQGEAMPTIWRHI-YSVMELPF-HLKVCCLYLCVFRPSIEISTRQLYQLWVAEVS-K 280 (663)
Q Consensus 204 ~~~~~~~W~~~~~~~~~~~l~~~~~~~~~~~i~~~l-~sy~~L~~-~~k~cfl~~a~Fp~~~~i~~~~Li~~Wi~~g~-~ 280 (663)
+..+.++|+.++++ +..... .+|...+ +||++|++ ..|.||+|||+||.++.++ .|..|++++. +
T Consensus 400 ~~k~~~~W~~~l~~-----L~~~~~----~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~---~v~~~l~~~~~~ 467 (1153)
T PLN03210 400 RGRDKEDWMDMLPR-----LRNGLD----GKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVN---DIKLLLANSDLD 467 (1153)
T ss_pred cCCCHHHHHHHHHH-----HHhCcc----HHHHHHHHHhhhccCccchhhhhheehhhcCCCCHH---HHHHHHHhcCCC
Confidence 96678899999999 655443 5674556 99999987 5999999999999997664 4666776644 2
Q ss_pred ---C--------CCCCccceEEcCHHHHHHHHHhcccCc-------eEEecCCC------ccCCCceeEEEEEecccccc
Q 037018 281 ---R--------RAGGTIKACYVPGFVYTSLFFMAGMME-------FVWMPHMQ------LETLANVKRCFILEDLIDEF 336 (663)
Q Consensus 281 ---g--------~~~~~~~~~~mhdll~dl~~~~~~~~~-------~~~~~~~~------~~~~~~~r~lsi~~~~~~~~ 336 (663)
| ........++|||++|++|+.+++++. +.....+. ......++.+++....+.+.
T Consensus 468 ~~~~l~~L~~ksLi~~~~~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~ 547 (1153)
T PLN03210 468 VNIGLKNLVDKSLIHVREDIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDEL 547 (1153)
T ss_pred chhChHHHHhcCCEEEcCCeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCcccee
Confidence 3 111123579999999999999987653 22111100 11234567776665443332
Q ss_pred ccccc--C-CCcccEEEeecCccccc--cccch-hHHhc-----------------------CCCcccEEEecCCcCccc
Q 037018 337 ISLEH--S-DMYLQSFLNHTLESDRL--ALIDC-ENFCK-----------------------KFKHLRVLNLGSAILYQY 387 (663)
Q Consensus 337 ~~~~~--~-~~~lr~L~l~~~~~~~~--~~~~l-~~~~~-----------------------~l~~Lr~L~L~~~~l~~l 387 (663)
..... . +.+++.|.++.+..... ....+ ..+ . .+.+|+.|++.++.+..+
T Consensus 548 ~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~-~~lp~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~~L 626 (1153)
T PLN03210 548 HIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGF-DYLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKL 626 (1153)
T ss_pred eecHHHHhcCccccEEEEecccccccccceeecCcch-hhcCcccEEEEecCCCCCCCCCcCCccCCcEEECcCcccccc
Confidence 11111 1 66677766654421100 00011 122 2 234444444444444444
Q ss_pred CccCCCCCCcCeEeccCC-CCccchhhhcccccccEeeccCC-cccccchhhhcCcCCcEEEccCCCCCCCCCCCcCCCC
Q 037018 388 PPGLENLFHLKYLKLNIP-SLNCLPSLLCTLLNLQTLEMPAS-YIDHSPEGIWMMQKLMHLNFGSINLPAPPKNYSSSLK 465 (663)
Q Consensus 388 p~~~~~l~~L~~L~L~~~-~i~~lp~~i~~L~~L~~L~L~~~-~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~ 465 (663)
|..+..+++|++|+|+++ .+..+| .++.+++|++|++++| .+..+|..++++++|+.|+++++.....+|..+ +++
T Consensus 627 ~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~ 704 (1153)
T PLN03210 627 WDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLK 704 (1153)
T ss_pred ccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCC
Confidence 444444555555555443 233444 2444555555555555 444555555555555555555323344444433 445
Q ss_pred CCcEeeCcCCC--CCChhhcCCCCCccEEEeecCCCccccchhhhh------------------------------cCCC
Q 037018 466 NLIFISSLNPS--SCTPDILGRLPNVQTLRISGDLSHYHSGVSKSL------------------------------CELH 513 (663)
Q Consensus 466 ~L~~L~l~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l------------------------------~~l~ 513 (663)
+|+.|++.+|. ..++.. .++|+.|++.++. ...+|..+ ..++
T Consensus 705 sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~---i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~ 778 (1153)
T PLN03210 705 SLYRLNLSGCSRLKSFPDI---STNISWLDLDETA---IEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSP 778 (1153)
T ss_pred CCCEEeCCCCCCccccccc---cCCcCeeecCCCc---cccccccccccccccccccccchhhccccccccchhhhhccc
Confidence 55555555443 222211 1234444444331 11122111 0123
Q ss_pred CCCEEEEeecCccccccccccccccCCCCceEEEEecccCCCCChhhhcCCCCCcEEEeecCCCCCceeeecCCCCCCcc
Q 037018 514 KLECLQLVHEGRMWQLSRMVLSEYQFPPCLTQLSLSNTQLMEDPMPALEKLPHLEVLKLKQNSYSERKLACVGSGSFPQL 593 (663)
Q Consensus 514 ~L~~L~l~~~~~l~~lp~~~~~l~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L 593 (663)
+|+.|++++|..+..+|. ++.. +++|+.|+|++|......+... ++++|+.|+|++|...... ....++|
T Consensus 779 sL~~L~Ls~n~~l~~lP~---si~~-L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~-----p~~~~nL 848 (1153)
T PLN03210 779 SLTRLFLSDIPSLVELPS---SIQN-LHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTF-----PDISTNI 848 (1153)
T ss_pred cchheeCCCCCCccccCh---hhhC-CCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccc-----ccccccc
Confidence 444455544444444554 4555 5555555555553222222222 4555555555554332211 1123466
Q ss_pred cEEEccCCCCccccccccccccccceEEeecCCCCCCCccccCCCCCCCEEEecCCCH
Q 037018 594 KILHLKSMLWLEEWTMGAGAMPKLESLIVNPCAYLRKLPEELWCIKSLCKLELHWPQP 651 (663)
Q Consensus 594 ~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~l~~l~sL~~L~l~~c~~ 651 (663)
+.|+|++ +.++.+|..+..+++|+.|++++|+.++.+|..+..+++|+.+++++|+.
T Consensus 849 ~~L~Ls~-n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~ 905 (1153)
T PLN03210 849 SDLNLSR-TGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGA 905 (1153)
T ss_pred CEeECCC-CCCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcc
Confidence 6677766 35667777788899999999999999999998888999999999999973
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=99.98 E-value=8e-33 Score=282.65 Aligned_cols=230 Identities=24% Similarity=0.389 Sum_probs=181.1
Q ss_pred hhhcHHHHHHHHhcCCCCceEEEEEec----chhhHHHHHhcCCCccccCCCCccccCCceeeccCCCcceEeCCCcchh
Q 037018 24 VKVKVKAVLVWLFMLDSMWLQFLTAVA----YKTAFVADIYNNNVDLSAMNPKLRVPKRFINKAFPVAFPVDVNCACNAQ 99 (663)
Q Consensus 24 ~~~~~~~i~~~L~~~~~~~~~vi~i~G----GKTtla~~v~~~~~~~~~~~~~~~~~~~F~~~~~~~~~~v~vs~~~~~~ 99 (663)
||.++++|.+.|..... +.++|+|+| ||||||+++|++. +++.+|+.++| +.+++..+
T Consensus 1 re~~~~~l~~~L~~~~~-~~~~v~I~G~~G~GKT~LA~~~~~~~----------~~~~~f~~v~w-----v~~~~~~~-- 62 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSN-EVRVVAIVGMGGIGKTTLARQVARDL----------RIKNRFDGVIW-----VSLSKNPS-- 62 (287)
T ss_dssp -HHHHHHHHHHHHTTTT-SSEEEEEEESTTSSHHHHHHHHHCHH----------HHCCCCTEEEE-----EEEES-SC--
T ss_pred CHHHHHHHHHHhhCCCC-CeEEEEEEcCCcCCcceeeeeccccc----------ccccccccccc-----cccccccc--
Confidence 68899999999999654 789999999 9999999999965 58999999999 99999999
Q ss_pred HHHHHHHHHHHhCCCCCcc-hhhhhHhhHHHHHHHHhhcCCcEEEEEeCCCCChhhHHHHHhhCCCCCCCceEEEEEeCC
Q 037018 100 LNHILDDIIKSVMPPSRVN-VIISEDYKLKTIILRDYLTNKKDFIVLDDVFDDREIWNDLEKFLPDNQNGSRVLILVTDP 178 (663)
Q Consensus 100 ~~~l~~~i~~~l~~~~~~~-~~~~~~~~l~~~~l~~~L~~kr~LlVLDdv~~~~~~~~~l~~~~~~~~~gskIiiT~r~~ 178 (663)
...+++.|+.++....... ...+ ...+ ...+++.|+++++||||||||+ ...|+.+...++.+..|||||||||+.
T Consensus 63 ~~~~~~~i~~~l~~~~~~~~~~~~-~~~~-~~~l~~~L~~~~~LlVlDdv~~-~~~~~~l~~~~~~~~~~~kilvTTR~~ 139 (287)
T PF00931_consen 63 LEQLLEQILRQLGEPDSSISDPKD-IEEL-QDQLRELLKDKRCLLVLDDVWD-EEDLEELREPLPSFSSGSKILVTTRDR 139 (287)
T ss_dssp CHHHHHHHHHHHTCC-STSSCCSS-HHHH-HHHHHHHHCCTSEEEEEEEE-S-HHHH-------HCHHSS-EEEEEESCG
T ss_pred cccccccccccccccccccccccc-cccc-cccchhhhccccceeeeeeecc-ccccccccccccccccccccccccccc
Confidence 8999999999999874321 0111 4557 8889999999999999999999 999999999888888899999999987
Q ss_pred CCC-------ceEecc-----------------------------------ccccchhHHHHHhhccc-cCChhhHHHHH
Q 037018 179 FLL-------TSFELE-----------------------------------HGEKIRLNSALVGGPLI-RIKYEGWQFFI 215 (663)
Q Consensus 179 ~~~-------~~~~l~-----------------------------------~~~~iPlal~~~g~~L~-~~~~~~W~~~~ 215 (663)
..+ ..|+++ .+.+.|||++++|+.|+ +.+..+|+.++
T Consensus 140 ~v~~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~ 219 (287)
T PF00931_consen 140 SVAGSLGGTDKVIELEPLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEAL 219 (287)
T ss_dssp GGGTTHHSCEEEEECSS--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 543 356665 11222999999999998 66778999999
Q ss_pred hhcCCCCCCCCcCCC--Chhhhhhhc-ceeCCCChhhHHHHhhhcccCCCceechHHHHHHHHHcCC
Q 037018 216 LHYGSMPLGSYFQGE--AMPTIWRHI-YSVMELPFHLKVCCLYLCVFRPSIEISTRQLYQLWVAEVS 279 (663)
Q Consensus 216 ~~~~~~~l~~~~~~~--~~~~i~~~l-~sy~~L~~~~k~cfl~~a~Fp~~~~i~~~~Li~~Wi~~g~ 279 (663)
+. +.+...+. ....++..+ +||+.||++.|.||+|||+||+++.|+++.||++|+++||
T Consensus 220 ~~-----l~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~ 281 (287)
T PF00931_consen 220 EE-----LENSLRESRDYDRSVFSALELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGF 281 (287)
T ss_dssp HH-----HHHCHTCSSGSCHHHHHHHHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HH
T ss_pred cc-----ccccccccccccccccccceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCC
Confidence 87 55555322 236675666 9999999999999999999999999999999999999988
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.94 E-value=6.6e-26 Score=269.94 Aligned_cols=271 Identities=24% Similarity=0.281 Sum_probs=150.9
Q ss_pred CCcccEEEecCCcCc-ccCccCCCCCCcCeEeccCCCCc-cchhhhcccccccEeeccCCcc-cccchhhhcCcCCcEEE
Q 037018 371 FKHLRVLNLGSAILY-QYPPGLENLFHLKYLKLNIPSLN-CLPSLLCTLLNLQTLEMPASYI-DHSPEGIWMMQKLMHLN 447 (663)
Q Consensus 371 l~~Lr~L~L~~~~l~-~lp~~~~~l~~L~~L~L~~~~i~-~lp~~i~~L~~L~~L~L~~~~l-~~lp~~l~~l~~L~~L~ 447 (663)
+++|++|++++|.+. .+|..++.+++|++|++++|.+. .+|..++++++|++|++++|.+ +.+|..++++++|++|+
T Consensus 139 l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 218 (968)
T PLN00113 139 IPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIY 218 (968)
T ss_pred cCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEE
Confidence 344444444444443 44444555555555555555443 4455555555555555555532 34455555555555555
Q ss_pred ccCCCCCCCCCCCcCCCCCCcEeeCcCCC--CCChhhcCCCCCccEEEeecCCCccccchhhhhcCCCCCCEEEEeecCc
Q 037018 448 FGSINLPAPPKNYSSSLKNLIFISSLNPS--SCTPDILGRLPNVQTLRISGDLSHYHSGVSKSLCELHKLECLQLVHEGR 525 (663)
Q Consensus 448 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 525 (663)
+++|.....+|..++.+++|++|++.+|. +..+..++++++|+.|++++| ......|..+..+++|+.|++++ +.
T Consensus 219 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n--~l~~~~p~~l~~l~~L~~L~Ls~-n~ 295 (968)
T PLN00113 219 LGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQN--KLSGPIPPSIFSLQKLISLDLSD-NS 295 (968)
T ss_pred CcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCC--eeeccCchhHhhccCcCEEECcC-Ce
Confidence 55444444555555555555555555554 344455555555555555555 33444455555555566666554 33
Q ss_pred c-ccccccccccccCCCCceEEEEecccCCCCChhhhcCCCCCcEEEeecCCCCCceeeecCCCCCCcccEEEccCCCCc
Q 037018 526 M-WQLSRMVLSEYQFPPCLTQLSLSNTQLMEDPMPALEKLPHLEVLKLKQNSYSERKLACVGSGSFPQLKILHLKSMLWL 604 (663)
Q Consensus 526 l-~~lp~~~~~l~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l 604 (663)
+ ..+|. ++.. +++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+.. ++.+++|+.|++++|...
T Consensus 296 l~~~~p~---~~~~-l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~--l~~~~~L~~L~Ls~n~l~ 369 (968)
T PLN00113 296 LSGEIPE---LVIQ-LQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKN--LGKHNNLTVLDLSTNNLT 369 (968)
T ss_pred eccCCCh---hHcC-CCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChH--HhCCCCCcEEECCCCeeE
Confidence 3 24554 5555 566666666666555555555666666666666666555444332 345566666666665444
Q ss_pred cccccccccccccceEEeecCCCCCCCccccCCCCCCCEEEecCCC
Q 037018 605 EEWTMGAGAMPKLESLIVNPCAYLRKLPEELWCIKSLCKLELHWPQ 650 (663)
Q Consensus 605 ~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~l~~l~sL~~L~l~~c~ 650 (663)
..+|..+..+++|+.|++++|.....+|..+..+++|+.|++++|.
T Consensus 370 ~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~ 415 (968)
T PLN00113 370 GEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNS 415 (968)
T ss_pred eeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCE
Confidence 4555556666667777777766666667777777888888887775
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.94 E-value=5.9e-26 Score=270.34 Aligned_cols=319 Identities=20% Similarity=0.230 Sum_probs=198.6
Q ss_pred CceeEEEEEecccccccccccCCCcccEEEeecCccccccccchhHHhcCCCcccEEEecCCcCc-ccCccCCCCCCcCe
Q 037018 321 ANVKRCFILEDLIDEFISLEHSDMYLQSFLNHTLESDRLALIDCENFCKKFKHLRVLNLGSAILY-QYPPGLENLFHLKY 399 (663)
Q Consensus 321 ~~~r~lsi~~~~~~~~~~~~~~~~~lr~L~l~~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~l~-~lp~~~~~l~~L~~ 399 (663)
.++|++.+..+.+....+ ....+++++|.+.++.... .++..+..+++|++|++++|.+. .+|..++++++|++
T Consensus 118 ~~L~~L~Ls~n~l~~~~p-~~~l~~L~~L~Ls~n~~~~----~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 192 (968)
T PLN00113 118 SSLRYLNLSNNNFTGSIP-RGSIPNLETLDLSNNMLSG----EIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEF 192 (968)
T ss_pred CCCCEEECcCCccccccC-ccccCCCCEEECcCCcccc----cCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCe
Confidence 455666665554332211 1115667777776665532 23333377777777777777765 66667777777777
Q ss_pred EeccCCCCc-cchhhhcccccccEeeccCCcc-cccchhhhcCcCCcEEEccCCCCCCCCCCCcCCCCCCcEeeCcCCC-
Q 037018 400 LKLNIPSLN-CLPSLLCTLLNLQTLEMPASYI-DHSPEGIWMMQKLMHLNFGSINLPAPPKNYSSSLKNLIFISSLNPS- 476 (663)
Q Consensus 400 L~L~~~~i~-~lp~~i~~L~~L~~L~L~~~~l-~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~- 476 (663)
|++++|.+. .+|..++++++|++|++++|.+ ..+|..++++++|++|++++|.....+|..++.+++|+.|++.++.
T Consensus 193 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l 272 (968)
T PLN00113 193 LTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKL 272 (968)
T ss_pred eeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCee
Confidence 777777665 5677777777777777777744 3566677777777777777555556667777777777777777666
Q ss_pred -CCChhhcCCCCCccEEEeecCCCccccchhhhhcCCCCCCEEEEeecCccccccccccccccCCCCceEEEEecccCCC
Q 037018 477 -SCTPDILGRLPNVQTLRISGDLSHYHSGVSKSLCELHKLECLQLVHEGRMWQLSRMVLSEYQFPPCLTQLSLSNTQLME 555 (663)
Q Consensus 477 -~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~lp~~~~~l~~~l~~L~~L~L~~~~l~~ 555 (663)
...+..+..+++|+.|++++| ......|..+..+++|+.|++++|.....+|. .+.. +++|+.|++++|.+.+
T Consensus 273 ~~~~p~~l~~l~~L~~L~Ls~n--~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~---~~~~-l~~L~~L~L~~n~l~~ 346 (968)
T PLN00113 273 SGPIPPSIFSLQKLISLDLSDN--SLSGEIPELVIQLQNLEILHLFSNNFTGKIPV---ALTS-LPRLQVLQLWSNKFSG 346 (968)
T ss_pred eccCchhHhhccCcCEEECcCC--eeccCCChhHcCCCCCcEEECCCCccCCcCCh---hHhc-CCCCCEEECcCCCCcC
Confidence 456666667777777777766 34555666666667777777765322234555 5566 6667777777666665
Q ss_pred CChhhhcCCCCCcEEEeecCCCCCceeeec----------------------CCCCCCcccEEEccCCCCcccccccccc
Q 037018 556 DPMPALEKLPHLEVLKLKQNSYSERKLACV----------------------GSGSFPQLKILHLKSMLWLEEWTMGAGA 613 (663)
Q Consensus 556 ~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~----------------------~~~~~~~L~~L~L~~~~~l~~l~~~~~~ 613 (663)
..+..++.+++|+.|++++|.+.+..+... .+..+++|+.|++++|.....+|..+..
T Consensus 347 ~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~ 426 (968)
T PLN00113 347 EIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTK 426 (968)
T ss_pred cCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhc
Confidence 566666666666666666665544332210 0234556666666665444455555666
Q ss_pred ccccceEEeecCCCCCCCccccCCCCCCCEEEecCCC
Q 037018 614 MPKLESLIVNPCAYLRKLPEELWCIKSLCKLELHWPQ 650 (663)
Q Consensus 614 l~~L~~L~l~~c~~l~~l~~~l~~l~sL~~L~l~~c~ 650 (663)
+++|+.|++++|.....+|..+..+++|+.|++++|.
T Consensus 427 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~ 463 (968)
T PLN00113 427 LPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNK 463 (968)
T ss_pred CCCCCEEECcCCcccCccChhhccCCCCcEEECcCce
Confidence 6666666666666555555555666777777777664
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.91 E-value=3.8e-27 Score=241.61 Aligned_cols=313 Identities=21% Similarity=0.222 Sum_probs=252.8
Q ss_pred CceeEEEEEecccccccccccC--CCcccEEEeecCccccccccch-hHHhcCCCcccEEEecCCcCcccCccCCCCCCc
Q 037018 321 ANVKRCFILEDLIDEFISLEHS--DMYLQSFLNHTLESDRLALIDC-ENFCKKFKHLRVLNLGSAILYQYPPGLENLFHL 397 (663)
Q Consensus 321 ~~~r~lsi~~~~~~~~~~~~~~--~~~lr~L~l~~~~~~~~~~~~l-~~~~~~l~~Lr~L~L~~~~l~~lp~~~~~l~~L 397 (663)
.++.|+++..+.+..+. ... .+.+|++.+.++... ..-+ +++ -+++.|.+|||+.|.++..|..+..-+++
T Consensus 55 qkLEHLs~~HN~L~~vh--GELs~Lp~LRsv~~R~N~LK---nsGiP~di-F~l~dLt~lDLShNqL~EvP~~LE~AKn~ 128 (1255)
T KOG0444|consen 55 QKLEHLSMAHNQLISVH--GELSDLPRLRSVIVRDNNLK---NSGIPTDI-FRLKDLTILDLSHNQLREVPTNLEYAKNS 128 (1255)
T ss_pred hhhhhhhhhhhhhHhhh--hhhccchhhHHHhhhccccc---cCCCCchh-cccccceeeecchhhhhhcchhhhhhcCc
Confidence 45677777776544443 333 788888888887764 2234 555 68889999999999998888888888899
Q ss_pred CeEeccCCCCccchhhh-cccccccEeeccCCcccccchhhhcCcCCcEEEccCCCCCCCCCCCcCCCCCCcEeeCcCCC
Q 037018 398 KYLKLNIPSLNCLPSLL-CTLLNLQTLEMPASYIDHSPEGIWMMQKLMHLNFGSINLPAPPKNYSSSLKNLIFISSLNPS 476 (663)
Q Consensus 398 ~~L~L~~~~i~~lp~~i-~~L~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 476 (663)
-.|+|++|+|+++|..+ -+|..|-.|||++|.+..+|+.+..+..|+.|.+++|.....-...+..+++|+.|.+++..
T Consensus 129 iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~Tq 208 (1255)
T KOG0444|consen 129 IVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQ 208 (1255)
T ss_pred EEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhccccc
Confidence 99999999999998654 48888889999999999999999999999999998443333223345567778888888776
Q ss_pred ---CCChhhcCCCCCccEEEeecCCCccccchhhhhcCCCCCCEEEEeecCccccccccccccccCCCCceEEEEecccC
Q 037018 477 ---SCTPDILGRLPNVQTLRISGDLSHYHSGVSKSLCELHKLECLQLVHEGRMWQLSRMVLSEYQFPPCLTQLSLSNTQL 553 (663)
Q Consensus 477 ---~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~lp~~~~~l~~~l~~L~~L~L~~~~l 553 (663)
..+|..+..+.||+.++++.| ....+|..+.++++|+.|+|++ |.++.+.. .... ..+|+.|+++.|++
T Consensus 209 RTl~N~Ptsld~l~NL~dvDlS~N---~Lp~vPecly~l~~LrrLNLS~-N~iteL~~---~~~~-W~~lEtLNlSrNQL 280 (1255)
T KOG0444|consen 209 RTLDNIPTSLDDLHNLRDVDLSEN---NLPIVPECLYKLRNLRRLNLSG-NKITELNM---TEGE-WENLETLNLSRNQL 280 (1255)
T ss_pred chhhcCCCchhhhhhhhhcccccc---CCCcchHHHhhhhhhheeccCc-Cceeeeec---cHHH-Hhhhhhhccccchh
Confidence 678888888999999999987 6677888888899999999997 88887765 5566 78899999999987
Q ss_pred CCCChhhhcCCCCCcEEEeecCCCCCceeeecCCCCCCcccEEEccCCCCccccccccccccccceEEeecCCCCCCCcc
Q 037018 554 MEDPMPALEKLPHLEVLKLKQNSYSERKLACVGSGSFPQLKILHLKSMLWLEEWTMGAGAMPKLESLIVNPCAYLRKLPE 633 (663)
Q Consensus 554 ~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~ 633 (663)
+ ..+..+..++.|+.|.+.+|.+.-+..+.. ++.+.+|+.+...+ +.++-+|.++..|++|+.|.+..|..+ .+|+
T Consensus 281 t-~LP~avcKL~kL~kLy~n~NkL~FeGiPSG-IGKL~~Levf~aan-N~LElVPEglcRC~kL~kL~L~~NrLi-TLPe 356 (1255)
T KOG0444|consen 281 T-VLPDAVCKLTKLTKLYANNNKLTFEGIPSG-IGKLIQLEVFHAAN-NKLELVPEGLCRCVKLQKLKLDHNRLI-TLPE 356 (1255)
T ss_pred c-cchHHHhhhHHHHHHHhccCcccccCCccc-hhhhhhhHHHHhhc-cccccCchhhhhhHHHHHhccccccee-echh
Confidence 4 577888899999999999888775555544 78899999999997 689999999999999999999988755 5899
Q ss_pred ccCCCCCCCEEEecCCCH
Q 037018 634 ELWCIKSLCKLELHWPQP 651 (663)
Q Consensus 634 ~l~~l~sL~~L~l~~c~~ 651 (663)
.+.-++.|+.|++..+|+
T Consensus 357 aIHlL~~l~vLDlreNpn 374 (1255)
T KOG0444|consen 357 AIHLLPDLKVLDLRENPN 374 (1255)
T ss_pred hhhhcCCcceeeccCCcC
Confidence 999999999999999884
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.89 E-value=6.2e-24 Score=217.01 Aligned_cols=317 Identities=18% Similarity=0.192 Sum_probs=170.8
Q ss_pred CCceeEEEEEecccccccccccCCCcccEEEeecCccccccccchhHHhcCCCcccEEEecCCcCcccCc-cCCCCCCcC
Q 037018 320 LANVKRCFILEDLIDEFISLEHSDMYLQSFLNHTLESDRLALIDCENFCKKFKHLRVLNLGSAILYQYPP-GLENLFHLK 398 (663)
Q Consensus 320 ~~~~r~lsi~~~~~~~~~~~~~~~~~lr~L~l~~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~l~~lp~-~~~~l~~L~ 398 (663)
..++..+.+..+.+..+|.+.....+++.|.+..+.....+. +++ +.++.||+|||+.|.+..+|. ++..-.+++
T Consensus 101 l~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~s---e~L-~~l~alrslDLSrN~is~i~~~sfp~~~ni~ 176 (873)
T KOG4194|consen 101 LPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTS---EEL-SALPALRSLDLSRNLISEIPKPSFPAKVNIK 176 (873)
T ss_pred CCcceeeeeccchhhhcccccccccceeEEeeeccccccccH---HHH-HhHhhhhhhhhhhchhhcccCCCCCCCCCce
Confidence 455666666666666666555446667777777766542111 334 666777777777777665553 344555777
Q ss_pred eEeccCCCCccch-hhhcccccccEeeccCCcccccchh-hhcCcCCcEEEccCCCCCCCCCCCcCCCCCCcEeeCcCCC
Q 037018 399 YLKLNIPSLNCLP-SLLCTLLNLQTLEMPASYIDHSPEG-IWMMQKLMHLNFGSINLPAPPKNYSSSLKNLIFISSLNPS 476 (663)
Q Consensus 399 ~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~l~~lp~~-l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 476 (663)
+|+|++|.|+.+. ..|..+.+|-+|.|+.|.+..+|.. |.++++|+.|++.+|.+...--..|..+++|+.|.+..+.
T Consensus 177 ~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~ 256 (873)
T KOG4194|consen 177 KLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRND 256 (873)
T ss_pred EEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcC
Confidence 7777777777553 4556666777777777777777654 4457777777776443321112234556666666665555
Q ss_pred --CCChhhcCCCCCccEEEeecCCCccccchhhhhcCCCCCCEEEEeecCccccccccccccccCCCCceEEEEecccCC
Q 037018 477 --SCTPDILGRLPNVQTLRISGDLSHYHSGVSKSLCELHKLECLQLVHEGRMWQLSRMVLSEYQFPPCLTQLSLSNTQLM 554 (663)
Q Consensus 477 --~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~lp~~~~~l~~~l~~L~~L~L~~~~l~ 554 (663)
.-....|-.|.++++|++..| .....-..++..++.|+.|+++. |.+..+..+ .... +++|+.|+|++|.++
T Consensus 257 I~kL~DG~Fy~l~kme~l~L~~N--~l~~vn~g~lfgLt~L~~L~lS~-NaI~rih~d--~Wsf-tqkL~~LdLs~N~i~ 330 (873)
T KOG4194|consen 257 ISKLDDGAFYGLEKMEHLNLETN--RLQAVNEGWLFGLTSLEQLDLSY-NAIQRIHID--SWSF-TQKLKELDLSSNRIT 330 (873)
T ss_pred cccccCcceeeecccceeecccc--hhhhhhcccccccchhhhhccch-hhhheeecc--hhhh-cccceeEeccccccc
Confidence 112223445556666666665 23333333455566666666664 555544320 2222 556666666666655
Q ss_pred CCChhhhcCCCCCcEEEeecCCCCCceeeecCCCCCCcccEEEccCCCCcc-cc---ccccccccccceEEeecCCCCCC
Q 037018 555 EDPMPALEKLPHLEVLKLKQNSYSERKLACVGSGSFPQLKILHLKSMLWLE-EW---TMGAGAMPKLESLIVNPCAYLRK 630 (663)
Q Consensus 555 ~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~-~l---~~~~~~l~~L~~L~l~~c~~l~~ 630 (663)
......|..+..|+.|.|++|.+.... ... +.++.+|+.|+|++|. +. .+ ...+..+|+|++|.+.+|+ +++
T Consensus 331 ~l~~~sf~~L~~Le~LnLs~Nsi~~l~-e~a-f~~lssL~~LdLr~N~-ls~~IEDaa~~f~gl~~LrkL~l~gNq-lk~ 406 (873)
T KOG4194|consen 331 RLDEGSFRVLSQLEELNLSHNSIDHLA-EGA-FVGLSSLHKLDLRSNE-LSWCIEDAAVAFNGLPSLRKLRLTGNQ-LKS 406 (873)
T ss_pred cCChhHHHHHHHhhhhcccccchHHHH-hhH-HHHhhhhhhhcCcCCe-EEEEEecchhhhccchhhhheeecCce-eee
Confidence 555555555555555555555543211 111 3445555555555532 22 11 1123345555555555544 333
Q ss_pred Ccc-ccCCCCCCCEEEecCCC
Q 037018 631 LPE-ELWCIKSLCKLELHWPQ 650 (663)
Q Consensus 631 l~~-~l~~l~sL~~L~l~~c~ 650 (663)
+|. .+.++++|++|++.+++
T Consensus 407 I~krAfsgl~~LE~LdL~~Na 427 (873)
T KOG4194|consen 407 IPKRAFSGLEALEHLDLGDNA 427 (873)
T ss_pred cchhhhccCcccceecCCCCc
Confidence 443 34455555555555544
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.89 E-value=1.1e-25 Score=230.82 Aligned_cols=311 Identities=19% Similarity=0.177 Sum_probs=268.8
Q ss_pred CCCceeEEEEEecccccccccccC--CCcccEEEeecCccccccccch-hHHhcCCCcccEEEecCCcCc--ccCccCCC
Q 037018 319 TLANVKRCFILEDLIDEFISLEHS--DMYLQSFLNHTLESDRLALIDC-ENFCKKFKHLRVLNLGSAILY--QYPPGLEN 393 (663)
Q Consensus 319 ~~~~~r~lsi~~~~~~~~~~~~~~--~~~lr~L~l~~~~~~~~~~~~l-~~~~~~l~~Lr~L~L~~~~l~--~lp~~~~~ 393 (663)
....++.+.+....+..++ +.. +.++..|.+..+... ++ ..+ ..+|.||.+.+..|.++ .+|..+.+
T Consensus 30 qMt~~~WLkLnrt~L~~vP--eEL~~lqkLEHLs~~HN~L~-----~vhGEL-s~Lp~LRsv~~R~N~LKnsGiP~diF~ 101 (1255)
T KOG0444|consen 30 QMTQMTWLKLNRTKLEQVP--EELSRLQKLEHLSMAHNQLI-----SVHGEL-SDLPRLRSVIVRDNNLKNSGIPTDIFR 101 (1255)
T ss_pred HhhheeEEEechhhhhhCh--HHHHHHhhhhhhhhhhhhhH-----hhhhhh-ccchhhHHHhhhccccccCCCCchhcc
Confidence 4456777888777766666 555 899999999998774 34 566 89999999999999987 88999999
Q ss_pred CCCcCeEeccCCCCccchhhhcccccccEeeccCCcccccchh-hhcCcCCcEEEccCCCCCCCCCCCcCCCCCCcEeeC
Q 037018 394 LFHLKYLKLNIPSLNCLPSLLCTLLNLQTLEMPASYIDHSPEG-IWMMQKLMHLNFGSINLPAPPKNYSSSLKNLIFISS 472 (663)
Q Consensus 394 l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~-l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 472 (663)
+..|..|+|+.|++.+.|..+..-+++-+|+|++|++..+|.. +.++.-|-.|+++ ++....+|+.+..+.+|++|.+
T Consensus 102 l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS-~NrLe~LPPQ~RRL~~LqtL~L 180 (1255)
T KOG0444|consen 102 LKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLS-NNRLEMLPPQIRRLSMLQTLKL 180 (1255)
T ss_pred cccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccc-cchhhhcCHHHHHHhhhhhhhc
Confidence 9999999999999999999999999999999999999999987 5689999999999 8889999999999999999999
Q ss_pred cCCC--CCChhhcCCCCCccEEEeecCCCccccchhhhhcCCCCCCEEEEeecCccccccccccccccCCCCceEEEEec
Q 037018 473 LNPS--SCTPDILGRLPNVQTLRISGDLSHYHSGVSKSLCELHKLECLQLVHEGRMWQLSRMVLSEYQFPPCLTQLSLSN 550 (663)
Q Consensus 473 ~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~lp~~~~~l~~~l~~L~~L~L~~ 550 (663)
++++ ......+..+++|..|++++.. .....+|.++..+.+|..++++ +|++..+|. .+.+ +++|+.|+|++
T Consensus 181 s~NPL~hfQLrQLPsmtsL~vLhms~Tq-RTl~N~Ptsld~l~NL~dvDlS-~N~Lp~vPe---cly~-l~~LrrLNLS~ 254 (1255)
T KOG0444|consen 181 SNNPLNHFQLRQLPSMTSLSVLHMSNTQ-RTLDNIPTSLDDLHNLRDVDLS-ENNLPIVPE---CLYK-LRNLRRLNLSG 254 (1255)
T ss_pred CCChhhHHHHhcCccchhhhhhhccccc-chhhcCCCchhhhhhhhhcccc-ccCCCcchH---HHhh-hhhhheeccCc
Confidence 9998 5555677788899999999874 5566789999999999999999 599999999 9999 99999999999
Q ss_pred ccCCCCChhhhcCCCCCcEEEeecCCCCCceeeecCCCCCCcccEEEccCCCCcc--ccccccccccccceEEeecCCCC
Q 037018 551 TQLMEDPMPALEKLPHLEVLKLKQNSYSERKLACVGSGSFPQLKILHLKSMLWLE--EWTMGAGAMPKLESLIVNPCAYL 628 (663)
Q Consensus 551 ~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~--~l~~~~~~l~~L~~L~l~~c~~l 628 (663)
|.++. .....+...+|++|+++.|.++..... ...+++|+.|.+.++ .+. .+|.+++.+.+|+.+...+| ++
T Consensus 255 N~ite-L~~~~~~W~~lEtLNlSrNQLt~LP~a---vcKL~kL~kLy~n~N-kL~FeGiPSGIGKL~~Levf~aanN-~L 328 (1255)
T KOG0444|consen 255 NKITE-LNMTEGEWENLETLNLSRNQLTVLPDA---VCKLTKLTKLYANNN-KLTFEGIPSGIGKLIQLEVFHAANN-KL 328 (1255)
T ss_pred Cceee-eeccHHHHhhhhhhccccchhccchHH---HhhhHHHHHHHhccC-cccccCCccchhhhhhhHHHHhhcc-cc
Confidence 99864 334566778999999999998764432 468899999988874 444 89999999999999999876 48
Q ss_pred CCCccccCCCCCCCEEEecCCC
Q 037018 629 RKLPEELWCIKSLCKLELHWPQ 650 (663)
Q Consensus 629 ~~l~~~l~~l~sL~~L~l~~c~ 650 (663)
+.+|+++++|..|+.|.++.+.
T Consensus 329 ElVPEglcRC~kL~kL~L~~Nr 350 (1255)
T KOG0444|consen 329 ELVPEGLCRCVKLQKLKLDHNR 350 (1255)
T ss_pred ccCchhhhhhHHHHHhcccccc
Confidence 8899999999999999998754
No 9
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.87 E-value=1.6e-23 Score=214.03 Aligned_cols=326 Identities=19% Similarity=0.134 Sum_probs=262.9
Q ss_pred CCCceeEEEEEecccccccccccC-CCcccEEEeecCccccccccchhHHhcCCCcccEEEecCCcCcccC-ccCCCCCC
Q 037018 319 TLANVKRCFILEDLIDEFISLEHS-DMYLQSFLNHTLESDRLALIDCENFCKKFKHLRVLNLGSAILYQYP-PGLENLFH 396 (663)
Q Consensus 319 ~~~~~r~lsi~~~~~~~~~~~~~~-~~~lr~L~l~~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~l~~lp-~~~~~l~~ 396 (663)
..+++.++.+..+.|..+.+.+-. .+-+|+|+++.+....+.. +.| .+-.+++.|+|++|.++.+. ..|..+.+
T Consensus 123 ~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~---~sf-p~~~ni~~L~La~N~It~l~~~~F~~lns 198 (873)
T KOG4194|consen 123 ESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPK---PSF-PAKVNIKKLNLASNRITTLETGHFDSLNS 198 (873)
T ss_pred cccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccC---CCC-CCCCCceEEeeccccccccccccccccch
Confidence 456799999999988777644444 8999999999998763221 455 77789999999999999664 45888899
Q ss_pred cCeEeccCCCCccchh-hhcccccccEeeccCCccccc-chhhhcCcCCcEEEccCCCCCCCCCCCcCCCCCCcEeeCcC
Q 037018 397 LKYLKLNIPSLNCLPS-LLCTLLNLQTLEMPASYIDHS-PEGIWMMQKLMHLNFGSINLPAPPKNYSSSLKNLIFISSLN 474 (663)
Q Consensus 397 L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~l~~l-p~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 474 (663)
|..|.|+.|.++.+|. .|.+|++|+.|+|..|.++.. ...|..+++|+.|.+.+|.+...--..|-.+.++++|++..
T Consensus 199 L~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~ 278 (873)
T KOG4194|consen 199 LLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLET 278 (873)
T ss_pred heeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeeccc
Confidence 9999999999999984 566699999999999977766 44688999999999997766544445577889999999999
Q ss_pred CC--CCChhhcCCCCCccEEEeecCCCccccchhhhhcCCCCCCEEEEeecCccccccccccccccCCCCceEEEEeccc
Q 037018 475 PS--SCTPDILGRLPNVQTLRISGDLSHYHSGVSKSLCELHKLECLQLVHEGRMWQLSRMVLSEYQFPPCLTQLSLSNTQ 552 (663)
Q Consensus 475 ~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~lp~~~~~l~~~l~~L~~L~L~~~~ 552 (663)
+. ......+-+++.|+.|+++.| ......++++..+++|+.|+|+. |.++.+++. .+.. ++.|+.|.|++|.
T Consensus 279 N~l~~vn~g~lfgLt~L~~L~lS~N--aI~rih~d~WsftqkL~~LdLs~-N~i~~l~~~--sf~~-L~~Le~LnLs~Ns 352 (873)
T KOG4194|consen 279 NRLQAVNEGWLFGLTSLEQLDLSYN--AIQRIHIDSWSFTQKLKELDLSS-NRITRLDEG--SFRV-LSQLEELNLSHNS 352 (873)
T ss_pred chhhhhhcccccccchhhhhccchh--hhheeecchhhhcccceeEeccc-cccccCChh--HHHH-HHHhhhhcccccc
Confidence 88 333345668999999999999 56677788888999999999997 999998873 5555 8999999999999
Q ss_pred CCCCChhhhcCCCCCcEEEeecCCCCCceeeec-CCCCCCcccEEEccCCCCcccccc-ccccccccceEEeecCCCCCC
Q 037018 553 LMEDPMPALEKLPHLEVLKLKQNSYSERKLACV-GSGSFPQLKILHLKSMLWLEEWTM-GAGAMPKLESLIVNPCAYLRK 630 (663)
Q Consensus 553 l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~-~~~~~~~L~~L~L~~~~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~ 630 (663)
+....-..|..+.+|+.|+|+.|.++....... .+.++++|+.|.+.+ +.++.+|. .+..+++|++|++.+|+.-.-
T Consensus 353 i~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~g-Nqlk~I~krAfsgl~~LE~LdL~~NaiaSI 431 (873)
T KOG4194|consen 353 IDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTG-NQLKSIPKRAFSGLEALEHLDLGDNAIASI 431 (873)
T ss_pred hHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecC-ceeeecchhhhccCcccceecCCCCcceee
Confidence 876666788999999999999998764332211 157899999999999 57888885 578999999999999997766
Q ss_pred CccccCCCCCCCEEEec------CCCHHHHHh
Q 037018 631 LPEELWCIKSLCKLELH------WPQPELRKR 656 (663)
Q Consensus 631 l~~~l~~l~sL~~L~l~------~c~~~~~~~ 656 (663)
-|..+.++ .|++|.+. +|.-.|...
T Consensus 432 q~nAFe~m-~Lk~Lv~nSssflCDCql~Wl~q 462 (873)
T KOG4194|consen 432 QPNAFEPM-ELKELVMNSSSFLCDCQLKWLAQ 462 (873)
T ss_pred cccccccc-hhhhhhhcccceEEeccHHHHHH
Confidence 67778877 88888654 477665543
No 10
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.82 E-value=2.4e-19 Score=214.34 Aligned_cols=286 Identities=19% Similarity=0.192 Sum_probs=219.9
Q ss_pred CCceeEEEEEecccccccccccC-CCcccEEEeecCccccccccch-hHHhcCCCcccEEEecCCc-CcccCccCCCCCC
Q 037018 320 LANVKRCFILEDLIDEFISLEHS-DMYLQSFLNHTLESDRLALIDC-ENFCKKFKHLRVLNLGSAI-LYQYPPGLENLFH 396 (663)
Q Consensus 320 ~~~~r~lsi~~~~~~~~~~~~~~-~~~lr~L~l~~~~~~~~~~~~l-~~~~~~l~~Lr~L~L~~~~-l~~lp~~~~~l~~ 396 (663)
+.++|.+.+..+.+..++ ... ..+|+.|.+.++... .+ ..+ ..+++|+.|+|+++. +..+| .++.+++
T Consensus 588 p~~Lr~L~~~~~~l~~lP--~~f~~~~L~~L~L~~s~l~-----~L~~~~-~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~ 658 (1153)
T PLN03210 588 PPKLRLLRWDKYPLRCMP--SNFRPENLVKLQMQGSKLE-----KLWDGV-HSLTGLRNIDLRGSKNLKEIP-DLSMATN 658 (1153)
T ss_pred CcccEEEEecCCCCCCCC--CcCCccCCcEEECcCcccc-----cccccc-ccCCCCCEEECCCCCCcCcCC-ccccCCc
Confidence 345666666655544444 233 677778877776553 23 344 789999999999876 66777 4788999
Q ss_pred cCeEeccCC-CCccchhhhcccccccEeeccCC-cccccchhhhcCcCCcEEEccCCCCCCCCCCCcCCCCCCcEeeCcC
Q 037018 397 LKYLKLNIP-SLNCLPSLLCTLLNLQTLEMPAS-YIDHSPEGIWMMQKLMHLNFGSINLPAPPKNYSSSLKNLIFISSLN 474 (663)
Q Consensus 397 L~~L~L~~~-~i~~lp~~i~~L~~L~~L~L~~~-~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 474 (663)
|++|++++| .+..+|..++++++|+.|++++| .++.+|..+ ++++|+.|++++|.....+|.. ..+|+.|++.+
T Consensus 659 Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~ 734 (1153)
T PLN03210 659 LETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDE 734 (1153)
T ss_pred ccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCC
Confidence 999999997 57799999999999999999999 889999866 7999999999944444455532 34566666665
Q ss_pred CC-CCChhhc------------------------------CCCCCccEEEeecCCCccccchhhhhcCCCCCCEEEEeec
Q 037018 475 PS-SCTPDIL------------------------------GRLPNVQTLRISGDLSHYHSGVSKSLCELHKLECLQLVHE 523 (663)
Q Consensus 475 ~~-~~~~~~l------------------------------~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 523 (663)
+. ..+|..+ ...++|+.|++++| .....+|.++.++++|+.|++++|
T Consensus 735 n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n--~~l~~lP~si~~L~~L~~L~Ls~C 812 (1153)
T PLN03210 735 TAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDI--PSLVELPSSIQNLHKLEHLEIENC 812 (1153)
T ss_pred CccccccccccccccccccccccchhhccccccccchhhhhccccchheeCCCC--CCccccChhhhCCCCCCEEECCCC
Confidence 55 2222211 12357888888887 466678999999999999999998
Q ss_pred CccccccccccccccCCCCceEEEEecccCCCCChhhhcCCCCCcEEEeecCCCCCceeeecCCCCCCcccEEEccCCCC
Q 037018 524 GRMWQLSRMVLSEYQFPPCLTQLSLSNTQLMEDPMPALEKLPHLEVLKLKQNSYSERKLACVGSGSFPQLKILHLKSMLW 603 (663)
Q Consensus 524 ~~l~~lp~~~~~l~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~ 603 (663)
..++.+|. .+ . +++|+.|++++|......+. ..++|+.|+|++|.+..... . +..+++|+.|+|++|++
T Consensus 813 ~~L~~LP~---~~-~-L~sL~~L~Ls~c~~L~~~p~---~~~nL~~L~Ls~n~i~~iP~--s-i~~l~~L~~L~L~~C~~ 881 (1153)
T PLN03210 813 INLETLPT---GI-N-LESLESLDLSGCSRLRTFPD---ISTNISDLNLSRTGIEEVPW--W-IEKFSNLSFLDMNGCNN 881 (1153)
T ss_pred CCcCeeCC---CC-C-ccccCEEECCCCCccccccc---cccccCEeECCCCCCccChH--H-HhcCCCCCEEECCCCCC
Confidence 89999997 54 5 89999999999964333332 24689999999998875332 2 57899999999999999
Q ss_pred ccccccccccccccceEEeecCCCCCCC
Q 037018 604 LEEWTMGAGAMPKLESLIVNPCAYLRKL 631 (663)
Q Consensus 604 l~~l~~~~~~l~~L~~L~l~~c~~l~~l 631 (663)
+..+|.....+++|+.|++++|..+..+
T Consensus 882 L~~l~~~~~~L~~L~~L~l~~C~~L~~~ 909 (1153)
T PLN03210 882 LQRVSLNISKLKHLETVDFSDCGALTEA 909 (1153)
T ss_pred cCccCcccccccCCCeeecCCCcccccc
Confidence 9999999999999999999999988644
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.80 E-value=2.4e-22 Score=197.10 Aligned_cols=291 Identities=21% Similarity=0.208 Sum_probs=196.7
Q ss_pred CCcccEEEeecCccccccccch-hHHhcCCCcccEEEecCCcCcccCccCCCCCCcCeEeccCCCCccchhhhccccccc
Q 037018 343 DMYLQSFLNHTLESDRLALIDC-ENFCKKFKHLRVLNLGSAILYQYPPGLENLFHLKYLKLNIPSLNCLPSLLCTLLNLQ 421 (663)
Q Consensus 343 ~~~lr~L~l~~~~~~~~~~~~l-~~~~~~l~~Lr~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~ 421 (663)
+.++..+.+.++... .+ ++. -.|+.|+.||...|.++.+|..++.+..|..|+++.|++..+| .|..+..|.
T Consensus 159 ~~~l~~l~~~~n~l~-----~l~~~~-i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~lP-ef~gcs~L~ 231 (565)
T KOG0472|consen 159 LSKLSKLDLEGNKLK-----ALPENH-IAMKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIRFLP-EFPGCSLLK 231 (565)
T ss_pred HHHHHHhhccccchh-----hCCHHH-HHHHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcccccCC-CCCccHHHH
Confidence 555555555555543 33 444 3488888999988888899999999999999999999999998 888899999
Q ss_pred EeeccCCcccccchhhh-cCcCCcEEEccCCCCCCCCCCCcCCCCCCcEeeCcCCC-CCChhhcCCCCCccEEEeecCCC
Q 037018 422 TLEMPASYIDHSPEGIW-MMQKLMHLNFGSINLPAPPKNYSSSLKNLIFISSLNPS-SCTPDILGRLPNVQTLRISGDLS 499 (663)
Q Consensus 422 ~L~L~~~~l~~lp~~l~-~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~ 499 (663)
.|.+..|.+..+|.... .+++|..|+++ .+.....|.+++.+.+|+.|+++++. ...|..+|++ .|+.|-+.||.-
T Consensus 232 Elh~g~N~i~~lpae~~~~L~~l~vLDLR-dNklke~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPl 309 (565)
T KOG0472|consen 232 ELHVGENQIEMLPAEHLKHLNSLLVLDLR-DNKLKEVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPL 309 (565)
T ss_pred HHHhcccHHHhhHHHHhcccccceeeecc-ccccccCchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCch
Confidence 99999999999998865 89999999999 77788999999999999999999999 8899999999 899999998860
Q ss_pred ---------ccccchhh------------------------------hhcCCCCCCEEEEeecCccccccccccccccC-
Q 037018 500 ---------HYHSGVSK------------------------------SLCELHKLECLQLVHEGRMWQLSRMVLSEYQF- 539 (663)
Q Consensus 500 ---------~~~~~~~~------------------------------~l~~l~~L~~L~l~~~~~l~~lp~~~~~l~~~- 539 (663)
..+..+.. ......+.+.|++++ ..++.+|. .+...
T Consensus 310 rTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~-~qlt~VPd---EVfea~ 385 (565)
T KOG0472|consen 310 RTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSD-KQLTLVPD---EVFEAA 385 (565)
T ss_pred HHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccc-cccccCCH---HHHHHh
Confidence 00000000 011123555566655 33334443 11110
Q ss_pred -CCCceEEEEecccCC-----------------------CCChhhhcCCCCCcEEEeecCCCCCceeeecCCCCCCcccE
Q 037018 540 -PPCLTQLSLSNTQLM-----------------------EDPMPALEKLPHLEVLKLKQNSYSERKLACVGSGSFPQLKI 595 (663)
Q Consensus 540 -l~~L~~L~L~~~~l~-----------------------~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~ 595 (663)
-.-.+..+++.|++. +..+..+..+++|..|++++|-+.+ .+.. .+++..|+.
T Consensus 386 ~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln~-LP~e--~~~lv~Lq~ 462 (565)
T KOG0472|consen 386 KSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLND-LPEE--MGSLVRLQT 462 (565)
T ss_pred hhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhhh-cchh--hhhhhhhhe
Confidence 011223333333221 1223334455555666665333322 2221 234445555
Q ss_pred EEccCC----------------------CCccccccc-cccccccceEEeecCCCCCCCccccCCCCCCCEEEecCCC
Q 037018 596 LHLKSM----------------------LWLEEWTMG-AGAMPKLESLIVNPCAYLRKLPEELWCIKSLCKLELHWPQ 650 (663)
Q Consensus 596 L~L~~~----------------------~~l~~l~~~-~~~l~~L~~L~l~~c~~l~~l~~~l~~l~sL~~L~l~~c~ 650 (663)
|+++.+ +.+.+++.. +.+|.+|..|++.+|. +..+|..++++.+|++|+++|+|
T Consensus 463 LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNd-lq~IPp~LgnmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 463 LNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNND-LQQIPPILGNMTNLRHLELDGNP 539 (565)
T ss_pred ecccccccccchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCc-hhhCChhhccccceeEEEecCCc
Confidence 555543 233344433 6789999999999876 66789999999999999999988
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.77 E-value=1.1e-21 Score=192.62 Aligned_cols=270 Identities=20% Similarity=0.180 Sum_probs=201.5
Q ss_pred CCCcccEEEecCCcCcccCccCCCCCCcCeEeccCCCCccchhhhcccccccEeeccCCcccccchhhhcCcCCcEEEcc
Q 037018 370 KFKHLRVLNLGSAILYQYPPGLENLFHLKYLKLNIPSLNCLPSLLCTLLNLQTLEMPASYIDHSPEGIWMMQKLMHLNFG 449 (663)
Q Consensus 370 ~l~~Lr~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~l~ 449 (663)
.-.-|..|.+++|.+..+...+.++..|..|+++.|.+.++|+.++.+..++.|+.+++++..+|..++.+.+|++|+.+
T Consensus 43 ~qv~l~~lils~N~l~~l~~dl~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s 122 (565)
T KOG0472|consen 43 EQVDLQKLILSHNDLEVLREDLKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCS 122 (565)
T ss_pred hhcchhhhhhccCchhhccHhhhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhcc
Confidence 33446666777777766666667777777777777777777777777777777888777777777777777777777777
Q ss_pred CCCCCCCCCCCcCCCCCCcEeeCcCCC-CCChhhcCCCCCccEEEeecCCCccccchhhhhcCCCCCCEEEEeecCcccc
Q 037018 450 SINLPAPPKNYSSSLKNLIFISSLNPS-SCTPDILGRLPNVQTLRISGDLSHYHSGVSKSLCELHKLECLQLVHEGRMWQ 528 (663)
Q Consensus 450 ~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~ 528 (663)
.+....+|..++.+..++.++..++. ...|..+.++.+|..|++.++ ...++|+..-+++.|++|+... +.++.
T Consensus 123 -~n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n---~l~~l~~~~i~m~~L~~ld~~~-N~L~t 197 (565)
T KOG0472|consen 123 -SNELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGN---KLKALPENHIAMKRLKHLDCNS-NLLET 197 (565)
T ss_pred -ccceeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhcccc---chhhCCHHHHHHHHHHhcccch-hhhhc
Confidence 44455666677777777777777666 777777777778888888777 4445555444578888888775 77788
Q ss_pred ccccccccccCCCCceEEEEecccCCCCChhhhcCCCCCcEEEeecCCCCCceeeecCCCCCCcccEEEccCCCCccccc
Q 037018 529 LSRMVLSEYQFPPCLTQLSLSNTQLMEDPMPALEKLPHLEVLKLKQNSYSERKLACVGSGSFPQLKILHLKSMLWLEEWT 608 (663)
Q Consensus 529 lp~~~~~l~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~ 608 (663)
+|+ .++. +.+|..|++..|++. ..+.|.+|..|++|+++.|.+.-.. ... ..++++|..|++.+ +++++.|
T Consensus 198 lP~---~lg~-l~~L~~LyL~~Nki~--~lPef~gcs~L~Elh~g~N~i~~lp-ae~-~~~L~~l~vLDLRd-Nklke~P 268 (565)
T KOG0472|consen 198 LPP---ELGG-LESLELLYLRRNKIR--FLPEFPGCSLLKELHVGENQIEMLP-AEH-LKHLNSLLVLDLRD-NKLKEVP 268 (565)
T ss_pred CCh---hhcc-hhhhHHHHhhhcccc--cCCCCCccHHHHHHHhcccHHHhhH-HHH-hcccccceeeeccc-cccccCc
Confidence 888 7887 888888888888763 3447888888888888866654332 332 56788888888888 5788888
Q ss_pred cccccccccceEEeecCCCCCCCccccCCCCCCCEEEecCCCHHHHH
Q 037018 609 MGAGAMPKLESLIVNPCAYLRKLPEELWCIKSLCKLELHWPQPELRK 655 (663)
Q Consensus 609 ~~~~~l~~L~~L~l~~c~~l~~l~~~l~~l~sL~~L~l~~c~~~~~~ 655 (663)
..+.-+.+|++||+++|. +.++|..++++ .|+.|-+.|+|-..+.
T Consensus 269 de~clLrsL~rLDlSNN~-is~Lp~sLgnl-hL~~L~leGNPlrTiR 313 (565)
T KOG0472|consen 269 DEICLLRSLERLDLSNND-ISSLPYSLGNL-HLKFLALEGNPLRTIR 313 (565)
T ss_pred hHHHHhhhhhhhcccCCc-cccCCcccccc-eeeehhhcCCchHHHH
Confidence 888888889999988776 56688888888 8888888888855544
No 13
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.68 E-value=6.8e-19 Score=189.83 Aligned_cols=87 Identities=20% Similarity=0.263 Sum_probs=58.5
Q ss_pred eeEEEEEecccccccccccCCCcccEEEeecCccccccccchhHHhcCCCcccEEEecCCcCcccCccCCCCCCcCeEec
Q 037018 323 VKRCFILEDLIDEFISLEHSDMYLQSFLNHTLESDRLALIDCENFCKKFKHLRVLNLGSAILYQYPPGLENLFHLKYLKL 402 (663)
Q Consensus 323 ~r~lsi~~~~~~~~~~~~~~~~~lr~L~l~~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~l~~lp~~~~~l~~L~~L~L 402 (663)
+.++.+..+.+..++..-....+|+.|.+..+... ..+.-..++++|++|.|.+|.+..+|..+..+++|++|++
T Consensus 47 L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~-----~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~Ldl 121 (1081)
T KOG0618|consen 47 LKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIR-----SVPSSCSNMRNLQYLNLKNNRLQSLPASISELKNLQYLDL 121 (1081)
T ss_pred eEEeeccccccccCCchhhhHHHHhhcccchhhHh-----hCchhhhhhhcchhheeccchhhcCchhHHhhhccccccc
Confidence 55666666655555521111777888877777653 2222227788888888888888888888888888888888
Q ss_pred cCCCCccchhhh
Q 037018 403 NIPSLNCLPSLL 414 (663)
Q Consensus 403 ~~~~i~~lp~~i 414 (663)
++|.+..+|..+
T Consensus 122 S~N~f~~~Pl~i 133 (1081)
T KOG0618|consen 122 SFNHFGPIPLVI 133 (1081)
T ss_pred chhccCCCchhH
Confidence 888777665543
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.63 E-value=2.2e-15 Score=167.86 Aligned_cols=254 Identities=19% Similarity=0.098 Sum_probs=177.2
Q ss_pred cccEEEeecCccccccccchhHHhcCCCcccEEEecCCcCcccCccCCCCCCcCeEeccCCCCccchhhhcccccccEee
Q 037018 345 YLQSFLNHTLESDRLALIDCENFCKKFKHLRVLNLGSAILYQYPPGLENLFHLKYLKLNIPSLNCLPSLLCTLLNLQTLE 424 (663)
Q Consensus 345 ~lr~L~l~~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~ 424 (663)
+-..|.+.++... .+|..+. ++|+.|++.+|.++.+|.. +++|++|++++|.++.+|.. ..+|+.|+
T Consensus 202 ~~~~LdLs~~~Lt-----sLP~~l~--~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~LtsLP~l---p~sL~~L~ 268 (788)
T PRK15387 202 GNAVLNVGESGLT-----TLPDCLP--AHITTLVIPDNNLTSLPAL---PPELRTLEVSGNQLTSLPVL---PPGLLELS 268 (788)
T ss_pred CCcEEEcCCCCCC-----cCCcchh--cCCCEEEccCCcCCCCCCC---CCCCcEEEecCCccCcccCc---ccccceee
Confidence 3445555555443 3332212 4788888888888877752 46888888888888887743 35788888
Q ss_pred ccCCcccccchhhhcCcCCcEEEccCCCCCCCCCCCcCCCCCCcEeeCcCCC-CCChhhcCCCCCccEEEeecCCCcccc
Q 037018 425 MPASYIDHSPEGIWMMQKLMHLNFGSINLPAPPKNYSSSLKNLIFISSLNPS-SCTPDILGRLPNVQTLRISGDLSHYHS 503 (663)
Q Consensus 425 L~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~ 503 (663)
+++|.+..+|.. ..+|+.|+++ +|....+|.. .++|+.|++++|. ..++.. ..+|+.|.+++| ...
T Consensus 269 Ls~N~L~~Lp~l---p~~L~~L~Ls-~N~Lt~LP~~---p~~L~~LdLS~N~L~~Lp~l---p~~L~~L~Ls~N---~L~ 335 (788)
T PRK15387 269 IFSNPLTHLPAL---PSGLCKLWIF-GNQLTSLPVL---PPGLQELSVSDNQLASLPAL---PSELCKLWAYNN---QLT 335 (788)
T ss_pred ccCCchhhhhhc---hhhcCEEECc-CCcccccccc---ccccceeECCCCccccCCCC---cccccccccccC---ccc
Confidence 888877777653 3568888888 4444455542 3678888888887 444432 235777888877 223
Q ss_pred chhhhhcCCCCCCEEEEeecCccccccccccccccCCCCceEEEEecccCCCCChhhhcCCCCCcEEEeecCCCCCceee
Q 037018 504 GVSKSLCELHKLECLQLVHEGRMWQLSRMVLSEYQFPPCLTQLSLSNTQLMEDPMPALEKLPHLEVLKLKQNSYSERKLA 583 (663)
Q Consensus 504 ~~~~~l~~l~~L~~L~l~~~~~l~~lp~~~~~l~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~ 583 (663)
.+|. ...+|+.|++++ |.+..+|. . +++|+.|++++|.+.. .+. ..++|+.|++++|.+....
T Consensus 336 ~LP~---lp~~Lq~LdLS~-N~Ls~LP~---l----p~~L~~L~Ls~N~L~~-LP~---l~~~L~~LdLs~N~Lt~LP-- 398 (788)
T PRK15387 336 SLPT---LPSGLQELSVSD-NQLASLPT---L----PSELYKLWAYNNRLTS-LPA---LPSGLKELIVSGNRLTSLP-- 398 (788)
T ss_pred cccc---cccccceEecCC-CccCCCCC---C----Ccccceehhhcccccc-Ccc---cccccceEEecCCcccCCC--
Confidence 3443 125789999996 88888885 2 5678888999888753 332 2357899999988877422
Q ss_pred ecCCCCCCcccEEEccCCCCccccccccccccccceEEeecCCCCCCCccccCCCCCCCEEEecCCC
Q 037018 584 CVGSGSFPQLKILHLKSMLWLEEWTMGAGAMPKLESLIVNPCAYLRKLPEELWCIKSLCKLELHWPQ 650 (663)
Q Consensus 584 ~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~l~~l~sL~~L~l~~c~ 650 (663)
...++|+.|++++| .+..+|.. ..+|+.|++++|. ++.+|..+..+++|+.|++++++
T Consensus 399 ----~l~s~L~~LdLS~N-~LssIP~l---~~~L~~L~Ls~Nq-Lt~LP~sl~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 399 ----VLPSELKELMVSGN-RLTSLPML---PSGLLSLSVYRNQ-LTRLPESLIHLSSETTVNLEGNP 456 (788)
T ss_pred ----CcccCCCEEEccCC-cCCCCCcc---hhhhhhhhhccCc-ccccChHHhhccCCCeEECCCCC
Confidence 12468999999985 57777753 3578889999887 55789888899999999999987
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.63 E-value=1.7e-15 Score=168.90 Aligned_cols=260 Identities=16% Similarity=0.080 Sum_probs=190.4
Q ss_pred EEEEEecccccccccccCCCcccEEEeecCccccccccchhHHhcCCCcccEEEecCCcCcccCccCCCCCCcCeEeccC
Q 037018 325 RCFILEDLIDEFISLEHSDMYLQSFLNHTLESDRLALIDCENFCKKFKHLRVLNLGSAILYQYPPGLENLFHLKYLKLNI 404 (663)
Q Consensus 325 ~lsi~~~~~~~~~~~~~~~~~lr~L~l~~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~l~~lp~~~~~l~~L~~L~L~~ 404 (663)
.+.+..+.+..+| ....++++.|.+.++... .++ ..+++|++|++++|.++.+|.. .++|+.|++++
T Consensus 205 ~LdLs~~~LtsLP--~~l~~~L~~L~L~~N~Lt-----~LP---~lp~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~ 271 (788)
T PRK15387 205 VLNVGESGLTTLP--DCLPAHITTLVIPDNNLT-----SLP---ALPPELRTLEVSGNQLTSLPVL---PPGLLELSIFS 271 (788)
T ss_pred EEEcCCCCCCcCC--cchhcCCCEEEccCCcCC-----CCC---CCCCCCcEEEecCCccCcccCc---ccccceeeccC
Confidence 3444444444444 233567888988887664 233 2358899999999999988753 46899999999
Q ss_pred CCCccchhhhcccccccEeeccCCcccccchhhhcCcCCcEEEccCCCCCCCCCCCcCCCCCCcEeeCcCCC-CCChhhc
Q 037018 405 PSLNCLPSLLCTLLNLQTLEMPASYIDHSPEGIWMMQKLMHLNFGSINLPAPPKNYSSSLKNLIFISSLNPS-SCTPDIL 483 (663)
Q Consensus 405 ~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~l 483 (663)
|.+..+|.. ..+|+.|++++|.+..+|. .+++|+.|+++ +|....+|... .+|+.|++.+|. ..+|..
T Consensus 272 N~L~~Lp~l---p~~L~~L~Ls~N~Lt~LP~---~p~~L~~LdLS-~N~L~~Lp~lp---~~L~~L~Ls~N~L~~LP~l- 340 (788)
T PRK15387 272 NPLTHLPAL---PSGLCKLWIFGNQLTSLPV---LPPGLQELSVS-DNQLASLPALP---SELCKLWAYNNQLTSLPTL- 340 (788)
T ss_pred Cchhhhhhc---hhhcCEEECcCCccccccc---cccccceeECC-CCccccCCCCc---ccccccccccCcccccccc-
Confidence 999988863 3578899999999988886 35789999999 44444555432 357778888876 444431
Q ss_pred CCCCCccEEEeecCCCccccchhhhhcCCCCCCEEEEeecCccccccccccccccCCCCceEEEEecccCCCCChhhhcC
Q 037018 484 GRLPNVQTLRISGDLSHYHSGVSKSLCELHKLECLQLVHEGRMWQLSRMVLSEYQFPPCLTQLSLSNTQLMEDPMPALEK 563 (663)
Q Consensus 484 ~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~lp~~~~~l~~~l~~L~~L~L~~~~l~~~~~~~l~~ 563 (663)
.++|+.|++++| ....+|.. .++|+.|++++ +.+..+|. . +++|+.|++++|.+... +. .
T Consensus 341 --p~~Lq~LdLS~N---~Ls~LP~l---p~~L~~L~Ls~-N~L~~LP~---l----~~~L~~LdLs~N~Lt~L-P~---l 400 (788)
T PRK15387 341 --PSGLQELSVSDN---QLASLPTL---PSELYKLWAYN-NRLTSLPA---L----PSGLKELIVSGNRLTSL-PV---L 400 (788)
T ss_pred --ccccceEecCCC---ccCCCCCC---Ccccceehhhc-cccccCcc---c----ccccceEEecCCcccCC-CC---c
Confidence 247999999998 33345542 35788899986 88888886 2 46799999999988642 22 2
Q ss_pred CCCCcEEEeecCCCCCceeeecCCCCCCcccEEEccCCCCccccccccccccccceEEeecCCCCCCCcccc
Q 037018 564 LPHLEVLKLKQNSYSERKLACVGSGSFPQLKILHLKSMLWLEEWTMGAGAMPKLESLIVNPCAYLRKLPEEL 635 (663)
Q Consensus 564 l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~l 635 (663)
.++|+.|++++|.+.... . .+.+|+.|++++ +.+..+|..+..+++|+.|++++|+.....+..+
T Consensus 401 ~s~L~~LdLS~N~LssIP-~-----l~~~L~~L~Ls~-NqLt~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 401 PSELKELMVSGNRLTSLP-M-----LPSGLLSLSVYR-NQLTRLPESLIHLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred ccCCCEEEccCCcCCCCC-c-----chhhhhhhhhcc-CcccccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence 468999999999887522 1 245789999998 4688999999999999999999999766555443
No 16
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.62 E-value=1.4e-15 Score=170.57 Aligned_cols=244 Identities=18% Similarity=0.207 Sum_probs=173.4
Q ss_pred CcccEEEecCCcCcccCccCCCCCCcCeEeccCCCCccchhhhcccccccEeeccCCcccccchhhhcCcCCcEEEccCC
Q 037018 372 KHLRVLNLGSAILYQYPPGLENLFHLKYLKLNIPSLNCLPSLLCTLLNLQTLEMPASYIDHSPEGIWMMQKLMHLNFGSI 451 (663)
Q Consensus 372 ~~Lr~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~l~~~ 451 (663)
.+..+|+++++.++.+|..+. ++|+.|++++|.++.+|..+. .+|++|++++|.+..+|..+. .+|+.|+++ +
T Consensus 178 ~~~~~L~L~~~~LtsLP~~Ip--~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls-~ 250 (754)
T PRK15370 178 NNKTELRLKILGLTTIPACIP--EQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPATLP--DTIQEMELS-I 250 (754)
T ss_pred cCceEEEeCCCCcCcCCcccc--cCCcEEEecCCCCCcCChhhc--cCCCEEECCCCccccCChhhh--ccccEEECc-C
Confidence 456788888888888887654 478888998888888887664 588889998888888887553 478888888 4
Q ss_pred CCCCCCCCCcCCCCCCcEeeCcCCC-CCChhhcCCCCCccEEEeecCCCccccchhhhhcCCCCCCEEEEeecCcccccc
Q 037018 452 NLPAPPKNYSSSLKNLIFISSLNPS-SCTPDILGRLPNVQTLRISGDLSHYHSGVSKSLCELHKLECLQLVHEGRMWQLS 530 (663)
Q Consensus 452 ~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~lp 530 (663)
|....+|..+. ++|+.|+++++. ..+|..+. ++|+.|++++| ....+|..+. ++|+.|++++ |.+..+|
T Consensus 251 N~L~~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N---~Lt~LP~~lp--~sL~~L~Ls~-N~Lt~LP 320 (754)
T PRK15370 251 NRITELPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDN---SIRTLPAHLP--SGITHLNVQS-NSLTALP 320 (754)
T ss_pred CccCcCChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCCC---ccccCcccch--hhHHHHHhcC-CccccCC
Confidence 44456676554 478888888777 55555443 57888988887 2333444332 4788888886 7787777
Q ss_pred ccccccccCCCCceEEEEecccCCCCChhhhcCCCCCcEEEeecCCCCCceeeecCCCCCCcccEEEccCCCCccccccc
Q 037018 531 RMVLSEYQFPPCLTQLSLSNTQLMEDPMPALEKLPHLEVLKLKQNSYSERKLACVGSGSFPQLKILHLKSMLWLEEWTMG 610 (663)
Q Consensus 531 ~~~~~l~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~ 610 (663)
. .+ +++|+.|++++|.++. .+..+ .++|+.|++++|.+.... . .-.++|+.|+|++| .+..+|..
T Consensus 321 ~---~l---~~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~L~~LP-~----~lp~~L~~LdLs~N-~Lt~LP~~ 385 (754)
T PRK15370 321 E---TL---PPGLKTLEAGENALTS-LPASL--PPELQVLDVSKNQITVLP-E----TLPPTITTLDVSRN-ALTNLPEN 385 (754)
T ss_pred c---cc---cccceeccccCCcccc-CChhh--cCcccEEECCCCCCCcCC-h----hhcCCcCEEECCCC-cCCCCCHh
Confidence 5 32 4688889998888754 33333 368899999888776422 1 12368899999985 57777765
Q ss_pred cccccccceEEeecCCCCCCCcccc----CCCCCCCEEEecCCC
Q 037018 611 AGAMPKLESLIVNPCAYLRKLPEEL----WCIKSLCKLELHWPQ 650 (663)
Q Consensus 611 ~~~l~~L~~L~l~~c~~l~~l~~~l----~~l~sL~~L~l~~c~ 650 (663)
+. ++|+.|++++|.. ..+|..+ ..++++..|++.++|
T Consensus 386 l~--~sL~~LdLs~N~L-~~LP~sl~~~~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 386 LP--AALQIMQASRNNL-VRLPESLPHFRGEGPQPTRIIVEYNP 426 (754)
T ss_pred HH--HHHHHHhhccCCc-ccCchhHHHHhhcCCCccEEEeeCCC
Confidence 43 4688888888864 4555533 345788888888887
No 17
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.57 E-value=3.6e-17 Score=142.99 Aligned_cols=162 Identities=20% Similarity=0.271 Sum_probs=131.6
Q ss_pred hHHhcCCCcccEEEecCCcCcccCccCCCCCCcCeEeccCCCCccchhhhcccccccEeeccCCcccccchhhhcCcCCc
Q 037018 365 ENFCKKFKHLRVLNLGSAILYQYPPGLENLFHLKYLKLNIPSLNCLPSLLCTLLNLQTLEMPASYIDHSPEGIWMMQKLM 444 (663)
Q Consensus 365 ~~~~~~l~~Lr~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~l~~l~~L~ 444 (663)
+.+ -.+.+...|.+++|.++.+|..+..+.+|+.|++.+|+|+++|.+++.+++|+.|++.-|.+..+|.+|+.++.|+
T Consensus 27 ~gL-f~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~le 105 (264)
T KOG0617|consen 27 PGL-FNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALE 105 (264)
T ss_pred ccc-cchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCchhh
Confidence 444 5667777888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred EEEccCCCC-CCCCCCCcCCCCCCcEeeCcCCC-CCChhhcCCCCCccEEEeecCCCccccchhhhhcCCCCCCEEEEee
Q 037018 445 HLNFGSINL-PAPPKNYSSSLKNLIFISSLNPS-SCTPDILGRLPNVQTLRISGDLSHYHSGVSKSLCELHKLECLQLVH 522 (663)
Q Consensus 445 ~L~l~~~~~-~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~ 522 (663)
.|++.+|+. ...+|..+-.+..|+.|++..+. ..+|..++++++|+.|.+..+ ..-.+|..++.++.|++|.+.+
T Consensus 106 vldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdn---dll~lpkeig~lt~lrelhiqg 182 (264)
T KOG0617|consen 106 VLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDN---DLLSLPKEIGDLTRLRELHIQG 182 (264)
T ss_pred hhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccC---chhhCcHHHHHHHHHHHHhccc
Confidence 888887777 45677777777788888888887 778888888888888888877 5567788888888888888887
Q ss_pred cCccccccc
Q 037018 523 EGRMWQLSR 531 (663)
Q Consensus 523 ~~~l~~lp~ 531 (663)
+.++-+|+
T Consensus 183 -nrl~vlpp 190 (264)
T KOG0617|consen 183 -NRLTVLPP 190 (264)
T ss_pred -ceeeecCh
Confidence 78877776
No 18
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.56 E-value=1.3e-16 Score=172.43 Aligned_cols=245 Identities=21% Similarity=0.225 Sum_probs=123.3
Q ss_pred CCCcccEEEecCCcCcccCccCCCCCCcCeEeccCCCCccchhhhcccccccEeeccCCcccccchhhhcCcCCcEEEcc
Q 037018 370 KFKHLRVLNLGSAILYQYPPGLENLFHLKYLKLNIPSLNCLPSLLCTLLNLQTLEMPASYIDHSPEGIWMMQKLMHLNFG 449 (663)
Q Consensus 370 ~l~~Lr~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~l~ 449 (663)
.-++|+.|+.+.|.+..+-.. ..-.+|+|++++.+.++.+|+.++.+.+|+.+++.+|.+..+|..+....+|+.|.+.
T Consensus 217 ~g~~l~~L~a~~n~l~~~~~~-p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~ 295 (1081)
T KOG0618|consen 217 SGPSLTALYADHNPLTTLDVH-PVPLNLQYLDISHNNLSNLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAA 295 (1081)
T ss_pred cCcchheeeeccCcceeeccc-cccccceeeecchhhhhcchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhh
Confidence 344555566666554411111 1223666666666666666666666666666666666666666666666666666666
Q ss_pred CCCCCCCCCCCcCCCCCCcEeeCcCCC-CCChhhc-CC-------------------------CCCccEEEeecCCCccc
Q 037018 450 SINLPAPPKNYSSSLKNLIFISSLNPS-SCTPDIL-GR-------------------------LPNVQTLRISGDLSHYH 502 (663)
Q Consensus 450 ~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~l-~~-------------------------l~~L~~L~l~~~~~~~~ 502 (663)
.|-...+|+....++.|++|++..+. ..+|..+ .. ++.|+.|.+.+| ...
T Consensus 296 -~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN--~Lt 372 (1081)
T KOG0618|consen 296 -YNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANN--HLT 372 (1081)
T ss_pred -hhhhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcC--ccc
Confidence 44455556556666666666666655 3333211 11 223334444444 233
Q ss_pred cchhhhhcCCCCCCEEEEeecCccccccccccccccCCCCceEEEEecccCCCCChhhhcCCCCCcEEEeecCCCCCcee
Q 037018 503 SGVSKSLCELHKLECLQLVHEGRMWQLSRMVLSEYQFPPCLTQLSLSNTQLMEDPMPALEKLPHLEVLKLKQNSYSERKL 582 (663)
Q Consensus 503 ~~~~~~l~~l~~L~~L~l~~~~~l~~lp~~~~~l~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~ 582 (663)
+.....+.++.+|+.|+|++ |.+..||.- .+.+ ++.|++|++++|+++ ..+.....++.|+.|...+|.+..-.
T Consensus 373 d~c~p~l~~~~hLKVLhLsy-NrL~~fpas--~~~k-le~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~~fP- 446 (1081)
T KOG0618|consen 373 DSCFPVLVNFKHLKVLHLSY-NRLNSFPAS--KLRK-LEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLLSFP- 446 (1081)
T ss_pred ccchhhhccccceeeeeecc-cccccCCHH--HHhc-hHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCceeech-
Confidence 33334444455555555553 555555541 2223 445555555555542 23344555555555555444443221
Q ss_pred eecCCCCCCcccEEEccCCCCcccccccccc-ccccceEEeecCCCC
Q 037018 583 ACVGSGSFPQLKILHLKSMLWLEEWTMGAGA-MPKLESLIVNPCAYL 628 (663)
Q Consensus 583 ~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~-l~~L~~L~l~~c~~l 628 (663)
. +..++.|+.++++. +.+..+...... .|+|++|++++|..+
T Consensus 447 e---~~~l~qL~~lDlS~-N~L~~~~l~~~~p~p~LkyLdlSGN~~l 489 (1081)
T KOG0618|consen 447 E---LAQLPQLKVLDLSC-NNLSEVTLPEALPSPNLKYLDLSGNTRL 489 (1081)
T ss_pred h---hhhcCcceEEeccc-chhhhhhhhhhCCCcccceeeccCCccc
Confidence 1 34455555555554 344422211111 155555555555543
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.54 E-value=1.3e-15 Score=158.25 Aligned_cols=260 Identities=20% Similarity=0.166 Sum_probs=138.5
Q ss_pred hHHhcCCCcccEEEecCCcCc-----ccCccCCCCCCcCeEeccCCCCcc-------chhhhcccccccEeeccCCccc-
Q 037018 365 ENFCKKFKHLRVLNLGSAILY-----QYPPGLENLFHLKYLKLNIPSLNC-------LPSLLCTLLNLQTLEMPASYID- 431 (663)
Q Consensus 365 ~~~~~~l~~Lr~L~L~~~~l~-----~lp~~~~~l~~L~~L~L~~~~i~~-------lp~~i~~L~~L~~L~L~~~~l~- 431 (663)
..++..+++|++|+++++.++ .++..+...++|++|+++++.+.. ++..+.++++|+.|++++|.+.
T Consensus 16 ~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 95 (319)
T cd00116 16 TELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGP 95 (319)
T ss_pred HHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCCh
Confidence 344456666777777777663 344445555666666666654441 2334445556666666665433
Q ss_pred ccchhhhcCcC---CcEEEccCCCCCCCCCCCcCCCCCCcEeeCcCCCCCChhhcCCC-CCccEEEeecCCCccc----c
Q 037018 432 HSPEGIWMMQK---LMHLNFGSINLPAPPKNYSSSLKNLIFISSLNPSSCTPDILGRL-PNVQTLRISGDLSHYH----S 503 (663)
Q Consensus 432 ~lp~~l~~l~~---L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~~----~ 503 (663)
..+..+..+.+ |++|++++|....... ..+...+..+ ++|+.|++++|. .. .
T Consensus 96 ~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~------------------~~l~~~l~~~~~~L~~L~L~~n~--l~~~~~~ 155 (319)
T cd00116 96 DGCGVLESLLRSSSLQELKLNNNGLGDRGL------------------RLLAKGLKDLPPALEKLVLGRNR--LEGASCE 155 (319)
T ss_pred hHHHHHHHHhccCcccEEEeeCCccchHHH------------------HHHHHHHHhCCCCceEEEcCCCc--CCchHHH
Confidence 22333333333 5555555222111000 1122234444 667777777663 22 2
Q ss_pred chhhhhcCCCCCCEEEEeecCccc-----cccccccccccCCCCceEEEEecccCCCCC----hhhhcCCCCCcEEEeec
Q 037018 504 GVSKSLCELHKLECLQLVHEGRMW-----QLSRMVLSEYQFPPCLTQLSLSNTQLMEDP----MPALEKLPHLEVLKLKQ 574 (663)
Q Consensus 504 ~~~~~l~~l~~L~~L~l~~~~~l~-----~lp~~~~~l~~~l~~L~~L~L~~~~l~~~~----~~~l~~l~~L~~L~L~~ 574 (663)
.+...+..+++|++|++++ +.++ .++. .+.. .++|+.|++++|.+.+.. ...+..+++|+.|++++
T Consensus 156 ~~~~~~~~~~~L~~L~l~~-n~l~~~~~~~l~~---~l~~-~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~ 230 (319)
T cd00116 156 ALAKALRANRDLKELNLAN-NGIGDAGIRALAE---GLKA-NCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGD 230 (319)
T ss_pred HHHHHHHhCCCcCEEECcC-CCCchHHHHHHHH---HHHh-CCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCC
Confidence 3344455566777777776 4443 2332 3334 567777777777665332 23445677778888877
Q ss_pred CCCCCceeeecCCC----CCCcccEEEccCCCCc----cccccccccccccceEEeecCCCCCC----CccccCCC-CCC
Q 037018 575 NSYSERKLACVGSG----SFPQLKILHLKSMLWL----EEWTMGAGAMPKLESLIVNPCAYLRK----LPEELWCI-KSL 641 (663)
Q Consensus 575 ~~~~~~~~~~~~~~----~~~~L~~L~L~~~~~l----~~l~~~~~~l~~L~~L~l~~c~~l~~----l~~~l~~l-~sL 641 (663)
|.+.+..+... .. ..+.|++|++++|... ..+...+..+++|+.+++++|..... +...+... +.|
T Consensus 231 n~l~~~~~~~l-~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~ 309 (319)
T cd00116 231 NNLTDAGAAAL-ASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNEL 309 (319)
T ss_pred CcCchHHHHHH-HHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCch
Confidence 77665322111 11 2367888888776432 12333445567788888888775532 33333333 577
Q ss_pred CEEEecCCC
Q 037018 642 CKLELHWPQ 650 (663)
Q Consensus 642 ~~L~l~~c~ 650 (663)
+.|+|.+.|
T Consensus 310 ~~~~~~~~~ 318 (319)
T cd00116 310 ESLWVKDDS 318 (319)
T ss_pred hhcccCCCC
Confidence 777776654
No 20
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.53 E-value=2e-14 Score=161.29 Aligned_cols=224 Identities=21% Similarity=0.252 Sum_probs=127.0
Q ss_pred CcccEEEecCCcCcccCccCCCCCCcCeEeccCCCCccchhhhcccccccEeeccCCcccccchhhhcCcCCcEEEccCC
Q 037018 372 KHLRVLNLGSAILYQYPPGLENLFHLKYLKLNIPSLNCLPSLLCTLLNLQTLEMPASYIDHSPEGIWMMQKLMHLNFGSI 451 (663)
Q Consensus 372 ~~Lr~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~l~~~ 451 (663)
++|+.|++++|.++.+|..+. .+|++|++++|.++.+|..+. .+|+.|++++|.+..+|..+. .+|+.|+++ +
T Consensus 199 ~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls-~ 271 (754)
T PRK15370 199 EQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPATLP--DTIQEMELSINRITELPERLP--SALQSLDLF-H 271 (754)
T ss_pred cCCcEEEecCCCCCcCChhhc--cCCCEEECCCCccccCChhhh--ccccEEECcCCccCcCChhHh--CCCCEEECc-C
Confidence 356666666666666665443 366677776666666665443 356667776666666665543 366667766 3
Q ss_pred CCCCCCCCCcCCCCCCcEeeCcCCC-CCChhhcCCCCCccEEEeecCCCccccchhhhhcCCCCCCEEEEeecCcccccc
Q 037018 452 NLPAPPKNYSSSLKNLIFISSLNPS-SCTPDILGRLPNVQTLRISGDLSHYHSGVSKSLCELHKLECLQLVHEGRMWQLS 530 (663)
Q Consensus 452 ~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~lp 530 (663)
+....+|..+. ++|+.|++++|. ..++..+. ++|+.|++++|. ...+|..+ .++|+.|++++ +.++.+|
T Consensus 272 N~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~Ls~N~---Lt~LP~~l--~~sL~~L~Ls~-N~Lt~LP 341 (754)
T PRK15370 272 NKISCLPENLP--EELRYLSVYDNSIRTLPAHLP--SGITHLNVQSNS---LTALPETL--PPGLKTLEAGE-NALTSLP 341 (754)
T ss_pred CccCccccccC--CCCcEEECCCCccccCcccch--hhHHHHHhcCCc---cccCCccc--cccceeccccC-CccccCC
Confidence 33334555443 366666666665 33333222 356666666662 22333322 24677777765 5666666
Q ss_pred ccccccccCCCCceEEEEecccCCCCChhhhcCCCCCcEEEeecCCCCCceeeecCCCCCCcccEEEccCCCCccccccc
Q 037018 531 RMVLSEYQFPPCLTQLSLSNTQLMEDPMPALEKLPHLEVLKLKQNSYSERKLACVGSGSFPQLKILHLKSMLWLEEWTMG 610 (663)
Q Consensus 531 ~~~~~l~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~ 610 (663)
. .+ +++|+.|++++|.+.. .+..+ .++|+.|+|++|.++..... -..+|+.|++++| .+..+|..
T Consensus 342 ~---~l---~~sL~~L~Ls~N~L~~-LP~~l--p~~L~~LdLs~N~Lt~LP~~-----l~~sL~~LdLs~N-~L~~LP~s 406 (754)
T PRK15370 342 A---SL---PPELQVLDVSKNQITV-LPETL--PPTITTLDVSRNALTNLPEN-----LPAALQIMQASRN-NLVRLPES 406 (754)
T ss_pred h---hh---cCcccEEECCCCCCCc-CChhh--cCCcCEEECCCCcCCCCCHh-----HHHHHHHHhhccC-CcccCchh
Confidence 4 32 3567777777776542 22222 25677777777766542211 1235777777764 45555543
Q ss_pred c----ccccccceEEeecCCC
Q 037018 611 A----GAMPKLESLIVNPCAY 627 (663)
Q Consensus 611 ~----~~l~~L~~L~l~~c~~ 627 (663)
+ ..+|++..|++.+|+.
T Consensus 407 l~~~~~~~~~l~~L~L~~Npl 427 (754)
T PRK15370 407 LPHFRGEGPQPTRIIVEYNPF 427 (754)
T ss_pred HHHHhhcCCCccEEEeeCCCc
Confidence 2 3346677777777764
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.49 E-value=6.3e-16 Score=135.27 Aligned_cols=159 Identities=21% Similarity=0.275 Sum_probs=138.5
Q ss_pred ccCccCCCCCCcCeEeccCCCCccchhhhcccccccEeeccCCcccccchhhhcCcCCcEEEccCCCCCCCCCCCcCCCC
Q 037018 386 QYPPGLENLFHLKYLKLNIPSLNCLPSLLCTLLNLQTLEMPASYIDHSPEGIWMMQKLMHLNFGSINLPAPPKNYSSSLK 465 (663)
Q Consensus 386 ~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~ 465 (663)
++| .+..+.+++.|.+++|.++.+|+.|..+.+|+.|++.+|.++++|..++.+++|++|+++ -+....+|.+++.++
T Consensus 25 ~~~-gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvg-mnrl~~lprgfgs~p 102 (264)
T KOG0617|consen 25 ELP-GLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVG-MNRLNILPRGFGSFP 102 (264)
T ss_pred hcc-cccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecc-hhhhhcCccccCCCc
Confidence 444 344678899999999999999999999999999999999999999999999999999999 667888999999999
Q ss_pred CCcEeeCcCCC---CCChhhcCCCCCccEEEeecCCCccccchhhhhcCCCCCCEEEEeecCccccccccccccccCCCC
Q 037018 466 NLIFISSLNPS---SCTPDILGRLPNVQTLRISGDLSHYHSGVSKSLCELHKLECLQLVHEGRMWQLSRMVLSEYQFPPC 542 (663)
Q Consensus 466 ~L~~L~l~~~~---~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~lp~~~~~l~~~l~~ 542 (663)
.|+.|++..+. ..+|..|-.++.|+.|.++.+ ..+.+|..++++++|+.|.++. +.+-++|. .++. +..
T Consensus 103 ~levldltynnl~e~~lpgnff~m~tlralyl~dn---dfe~lp~dvg~lt~lqil~lrd-ndll~lpk---eig~-lt~ 174 (264)
T KOG0617|consen 103 ALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDN---DFEILPPDVGKLTNLQILSLRD-NDLLSLPK---EIGD-LTR 174 (264)
T ss_pred hhhhhhccccccccccCCcchhHHHHHHHHHhcCC---CcccCChhhhhhcceeEEeecc-CchhhCcH---HHHH-HHH
Confidence 99999998887 667777777888888888887 6677888888888999998886 77888888 7888 888
Q ss_pred ceEEEEecccCC
Q 037018 543 LTQLSLSNTQLM 554 (663)
Q Consensus 543 L~~L~L~~~~l~ 554 (663)
|++|.+.+|.++
T Consensus 175 lrelhiqgnrl~ 186 (264)
T KOG0617|consen 175 LRELHIQGNRLT 186 (264)
T ss_pred HHHHhcccceee
Confidence 888888888864
No 22
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.45 E-value=2.5e-14 Score=148.55 Aligned_cols=180 Identities=19% Similarity=0.129 Sum_probs=111.6
Q ss_pred CCcccEEEeecCccccccccchhHHhcCCCcccEEEecCCcCcc-------cCccCCCCCCcCeEeccCCCCc-cchhhh
Q 037018 343 DMYLQSFLNHTLESDRLALIDCENFCKKFKHLRVLNLGSAILYQ-------YPPGLENLFHLKYLKLNIPSLN-CLPSLL 414 (663)
Q Consensus 343 ~~~lr~L~l~~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~l~~-------lp~~~~~l~~L~~L~L~~~~i~-~lp~~i 414 (663)
..+++.+.+.++.........+...+...++|+.|+++++.+.. ++..+..+++|++|++++|.+. ..+..+
T Consensus 22 l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 101 (319)
T cd00116 22 LLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVL 101 (319)
T ss_pred HhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHH
Confidence 66799999999876432233455455888999999999987652 3345677899999999999887 445555
Q ss_pred ccccc---ccEeeccCCcccc-----cchhhhcC-cCCcEEEccCCCCCC----CCCCCcCCCCCCcEeeCcCCC-C---
Q 037018 415 CTLLN---LQTLEMPASYIDH-----SPEGIWMM-QKLMHLNFGSINLPA----PPKNYSSSLKNLIFISSLNPS-S--- 477 (663)
Q Consensus 415 ~~L~~---L~~L~L~~~~l~~-----lp~~l~~l-~~L~~L~l~~~~~~~----~~~~~l~~l~~L~~L~l~~~~-~--- 477 (663)
..+.+ |+.|++++|.+.. +...+..+ ++|+.|++++|.+.. .++..+..+++|++|++.++. .
T Consensus 102 ~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 181 (319)
T cd00116 102 ESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAG 181 (319)
T ss_pred HHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHH
Confidence 55555 9999999996652 33445666 889999998554442 122234445566666666654 1
Q ss_pred --CChhhcCCCCCccEEEeecCCC--ccccchhhhhcCCCCCCEEEEee
Q 037018 478 --CTPDILGRLPNVQTLRISGDLS--HYHSGVSKSLCELHKLECLQLVH 522 (663)
Q Consensus 478 --~~~~~l~~l~~L~~L~l~~~~~--~~~~~~~~~l~~l~~L~~L~l~~ 522 (663)
.++..+..+++|+.|++++|.. .....+...+..+++|++|++++
T Consensus 182 ~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~ 230 (319)
T cd00116 182 IRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGD 230 (319)
T ss_pred HHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCC
Confidence 1222334445566666665520 00112233344445555555554
No 23
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.41 E-value=5e-15 Score=146.00 Aligned_cols=273 Identities=17% Similarity=0.075 Sum_probs=158.7
Q ss_pred cCCCcccEEEeecCccccccccch-hHHhcCCCcccEEEecCCcCc-ccCccCCCCCCcCeEeccC-CCCccch-hhhcc
Q 037018 341 HSDMYLQSFLNHTLESDRLALIDC-ENFCKKFKHLRVLNLGSAILY-QYPPGLENLFHLKYLKLNI-PSLNCLP-SLLCT 416 (663)
Q Consensus 341 ~~~~~lr~L~l~~~~~~~~~~~~l-~~~~~~l~~Lr~L~L~~~~l~-~lp~~~~~l~~L~~L~L~~-~~i~~lp-~~i~~ 416 (663)
...+....+.+..+... .+ +..|+.+++||.|||++|.|+ --|+.|..+++|..|-+.+ |+|+.+| ..|++
T Consensus 64 ~LP~~tveirLdqN~I~-----~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~g 138 (498)
T KOG4237|consen 64 NLPPETVEIRLDQNQIS-----SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGG 138 (498)
T ss_pred cCCCcceEEEeccCCcc-----cCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhh
Confidence 33667777888887765 34 445588899999999999988 4467788888888877766 7888888 56778
Q ss_pred cccccEeeccCCcccccc-hhhhcCcCCcEEEccCCCCCCCCCC-CcCCCCCCcEeeCcCCC---C-----------CCh
Q 037018 417 LLNLQTLEMPASYIDHSP-EGIWMMQKLMHLNFGSINLPAPPKN-YSSSLKNLIFISSLNPS---S-----------CTP 480 (663)
Q Consensus 417 L~~L~~L~L~~~~l~~lp-~~l~~l~~L~~L~l~~~~~~~~~~~-~l~~l~~L~~L~l~~~~---~-----------~~~ 480 (663)
|..|+.|.+.-|++..++ ..+..+++|..|.+. .+....++. .+..+..++.+.+..++ . ..+
T Consensus 139 L~slqrLllNan~i~Cir~~al~dL~~l~lLsly-Dn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ 217 (498)
T KOG4237|consen 139 LSSLQRLLLNANHINCIRQDALRDLPSLSLLSLY-DNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNP 217 (498)
T ss_pred HHHHHHHhcChhhhcchhHHHHHHhhhcchhccc-chhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhch
Confidence 888888888888776654 448888888888888 444444444 56777777777776554 0 011
Q ss_pred hhcCCCCCccEEEeecCCCccccchh-h-hhcCCCCCCEEEEeecCccccccccccccccCCCCceEEEEecccCCCCCh
Q 037018 481 DILGRLPNVQTLRISGDLSHYHSGVS-K-SLCELHKLECLQLVHEGRMWQLSRMVLSEYQFPPCLTQLSLSNTQLMEDPM 558 (663)
Q Consensus 481 ~~l~~l~~L~~L~l~~~~~~~~~~~~-~-~l~~l~~L~~L~l~~~~~l~~lp~~~~~l~~~l~~L~~L~L~~~~l~~~~~ 558 (663)
.+++.+.......+.+.. ..... . ....+..+.+=-.+.|......|.. .+.. +++|+.|++++|+++....
T Consensus 218 ietsgarc~~p~rl~~~R---i~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~--cf~~-L~~L~~lnlsnN~i~~i~~ 291 (498)
T KOG4237|consen 218 IETSGARCVSPYRLYYKR---INQEDARKFLCSLESLPSRLSSEDFPDSICPAK--CFKK-LPNLRKLNLSNNKITRIED 291 (498)
T ss_pred hhcccceecchHHHHHHH---hcccchhhhhhhHHhHHHhhccccCcCCcChHH--HHhh-cccceEeccCCCccchhhh
Confidence 112222211111111110 00000 0 0000011110011112233333431 3444 6677777777776666666
Q ss_pred hhhcCCCCCcEEEeecCCCCCceeeecCCCCCCcccEEEccCCCCccccccccccccccceEEeecCCC
Q 037018 559 PALEKLPHLEVLKLKQNSYSERKLACVGSGSFPQLKILHLKSMLWLEEWTMGAGAMPKLESLIVNPCAY 627 (663)
Q Consensus 559 ~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~c~~ 627 (663)
.+|.++..+++|.|..|.+....... +.++..|+.|+|.+++.-.--|..+..+.+|.+|.+-.|+.
T Consensus 292 ~aFe~~a~l~eL~L~~N~l~~v~~~~--f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~ 358 (498)
T KOG4237|consen 292 GAFEGAAELQELYLTRNKLEFVSSGM--FQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPF 358 (498)
T ss_pred hhhcchhhhhhhhcCcchHHHHHHHh--hhccccceeeeecCCeeEEEecccccccceeeeeehccCcc
Confidence 66666677777777666654322221 45666666666666433334455566666666666666553
No 24
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.39 E-value=1.8e-14 Score=142.07 Aligned_cols=101 Identities=19% Similarity=0.303 Sum_probs=45.2
Q ss_pred EEEecCCcCcccCc-cCCCCCCcCeEeccCCCCccc-hhhhcccccccEeeccC-Ccccccchh-hhcCcCCcEEEccCC
Q 037018 376 VLNLGSAILYQYPP-GLENLFHLKYLKLNIPSLNCL-PSLLCTLLNLQTLEMPA-SYIDHSPEG-IWMMQKLMHLNFGSI 451 (663)
Q Consensus 376 ~L~L~~~~l~~lp~-~~~~l~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~-~~l~~lp~~-l~~l~~L~~L~l~~~ 451 (663)
.+.|..|+|+.+|+ .|+.+++||.|+|+.|+|+.+ |..|..+..|-.|-+.+ |+|+.+|.+ |..+.+|+-|.+.-|
T Consensus 71 eirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan 150 (498)
T KOG4237|consen 71 EIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNAN 150 (498)
T ss_pred EEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChh
Confidence 34444455544442 244455555555555555433 34444444444444444 245554443 444444444444422
Q ss_pred CCCCCCCCCcCCCCCCcEeeCcCCC
Q 037018 452 NLPAPPKNYSSSLKNLIFISSLNPS 476 (663)
Q Consensus 452 ~~~~~~~~~l~~l~~L~~L~l~~~~ 476 (663)
.........+..++++..|.+..+.
T Consensus 151 ~i~Cir~~al~dL~~l~lLslyDn~ 175 (498)
T KOG4237|consen 151 HINCIRQDALRDLPSLSLLSLYDNK 175 (498)
T ss_pred hhcchhHHHHHHhhhcchhcccchh
Confidence 2233333334444444444444443
No 25
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.31 E-value=1.5e-12 Score=148.59 Aligned_cols=198 Identities=20% Similarity=0.168 Sum_probs=143.7
Q ss_pred CCcccEEEeecCccccccccchhHHhcCCCcccEEEecCCc--CcccCc-cCCCCCCcCeEeccCC-CCccchhhhcccc
Q 037018 343 DMYLQSFLNHTLESDRLALIDCENFCKKFKHLRVLNLGSAI--LYQYPP-GLENLFHLKYLKLNIP-SLNCLPSLLCTLL 418 (663)
Q Consensus 343 ~~~lr~L~l~~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~--l~~lp~-~~~~l~~L~~L~L~~~-~i~~lp~~i~~L~ 418 (663)
...+|...+.++.... +..- ..+++|++|-+.++. +..++. .|..++.|++|||++| .+.++|+.|++|-
T Consensus 522 ~~~~rr~s~~~~~~~~-----~~~~-~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li 595 (889)
T KOG4658|consen 522 WNSVRRMSLMNNKIEH-----IAGS-SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELV 595 (889)
T ss_pred hhheeEEEEeccchhh-----ccCC-CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhh
Confidence 5677888877776642 2222 567789999999986 555543 4788999999999987 7789999999999
Q ss_pred cccEeeccCCcccccchhhhcCcCCcEEEccCCCCCCCCCCCcCCCCCCcEeeCcCCC----CCChhhcCCCCCccEEEe
Q 037018 419 NLQTLEMPASYIDHSPEGIWMMQKLMHLNFGSINLPAPPKNYSSSLKNLIFISSLNPS----SCTPDILGRLPNVQTLRI 494 (663)
Q Consensus 419 ~L~~L~L~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~----~~~~~~l~~l~~L~~L~l 494 (663)
+|++|+++++.+..+|.+++++.+|.+|++.++.....+|..+..+.+|++|.+.... ......+.++.+|+.+.+
T Consensus 596 ~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~ 675 (889)
T KOG4658|consen 596 HLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSI 675 (889)
T ss_pred hhhcccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhhee
Confidence 9999999999999999999999999999999554455556666679999999998765 445566677888888877
Q ss_pred ecCCCccccchhhhhcCCCCC----CEEEEeecCccccccccccccccCCCCceEEEEecccCCC
Q 037018 495 SGDLSHYHSGVSKSLCELHKL----ECLQLVHEGRMWQLSRMVLSEYQFPPCLTQLSLSNTQLME 555 (663)
Q Consensus 495 ~~~~~~~~~~~~~~l~~l~~L----~~L~l~~~~~l~~lp~~~~~l~~~l~~L~~L~L~~~~l~~ 555 (663)
.... . .+...+.....| +.+.+.+ ......+. .+.. +.+|+.|.+.+|.+.+
T Consensus 676 ~~~s---~-~~~e~l~~~~~L~~~~~~l~~~~-~~~~~~~~---~~~~-l~~L~~L~i~~~~~~e 731 (889)
T KOG4658|consen 676 TISS---V-LLLEDLLGMTRLRSLLQSLSIEG-CSKRTLIS---SLGS-LGNLEELSILDCGISE 731 (889)
T ss_pred ecch---h-HhHhhhhhhHHHHHHhHhhhhcc-cccceeec---cccc-ccCcceEEEEcCCCch
Confidence 6652 1 111112222222 2344333 22333333 5666 8999999999998643
No 26
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.05 E-value=1.3e-11 Score=123.27 Aligned_cols=289 Identities=18% Similarity=0.133 Sum_probs=148.4
Q ss_pred CcccEEEeecCccccccccchhHHhcCCCcccEEEecCCc-Cc--ccCccCCCCCCcCeEeccCC-CCc--cchhhhccc
Q 037018 344 MYLQSFLNHTLESDRLALIDCENFCKKFKHLRVLNLGSAI-LY--QYPPGLENLFHLKYLKLNIP-SLN--CLPSLLCTL 417 (663)
Q Consensus 344 ~~lr~L~l~~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~-l~--~lp~~~~~l~~L~~L~L~~~-~i~--~lp~~i~~L 417 (663)
..+|.|.+.++...+ ...+..+..++|+++.|++.+|. ++ .+-..-..++.|++|++..| .++ .+-.....+
T Consensus 138 g~lk~LSlrG~r~v~--~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC 215 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVG--DSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGC 215 (483)
T ss_pred cccccccccccccCC--cchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhh
Confidence 455666666665543 22344455667777777666665 33 11111234566666666663 444 122222345
Q ss_pred ccccEeeccCC-cccccchhhhcCcCCcEEEccCCCCCCCCCCCcCCCCCCcEeeCcCCCCCChh----hcCCCCCccEE
Q 037018 418 LNLQTLEMPAS-YIDHSPEGIWMMQKLMHLNFGSINLPAPPKNYSSSLKNLIFISSLNPSSCTPD----ILGRLPNVQTL 492 (663)
Q Consensus 418 ~~L~~L~L~~~-~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~----~l~~l~~L~~L 492 (663)
++|++|++++| .+.. ..+......+++++.+.+.+|.....+ .-+.++.+.++
T Consensus 216 ~kL~~lNlSwc~qi~~----------------------~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~l 273 (483)
T KOG4341|consen 216 RKLKYLNLSWCPQISG----------------------NGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKL 273 (483)
T ss_pred hhHHHhhhccCchhhc----------------------CcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhcc
Confidence 56666666666 3322 111111223333444444444311111 11334445555
Q ss_pred EeecCCCccccchhhhhcCCCCCCEEEEeecCccccccccccccccCCCCceEEEEeccc-CCCCChhhh-cCCCCCcEE
Q 037018 493 RISGDLSHYHSGVSKSLCELHKLECLQLVHEGRMWQLSRMVLSEYQFPPCLTQLSLSNTQ-LMEDPMPAL-EKLPHLEVL 570 (663)
Q Consensus 493 ~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~lp~~~~~l~~~l~~L~~L~L~~~~-l~~~~~~~l-~~l~~L~~L 570 (663)
++..|..-....+...-..+..|+.|..++|..++..+-. .++...++|+.|.++.|+ +++.....+ .+++.|+.+
T Consensus 274 nl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~--aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l 351 (483)
T KOG4341|consen 274 NLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLW--ALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERL 351 (483)
T ss_pred chhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHH--HHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhh
Confidence 5555521112222222234566777777766665543320 233236777777777775 333333333 356777777
Q ss_pred EeecCCCCCce-eeecCCCCCCcccEEEccCCCCcccc-----ccccccccccceEEeecCCCCC-CCccccCCCCCCCE
Q 037018 571 KLKQNSYSERK-LACVGSGSFPQLKILHLKSMLWLEEW-----TMGAGAMPKLESLIVNPCAYLR-KLPEELWCIKSLCK 643 (663)
Q Consensus 571 ~L~~~~~~~~~-~~~~~~~~~~~L~~L~L~~~~~l~~l-----~~~~~~l~~L~~L~l~~c~~l~-~l~~~l~~l~sL~~ 643 (663)
++..+....+. +... ..+++.|+.|.|+.|..++.- .....++..|+.|.+.+|+.+. ...+.+..|++|+.
T Consensus 352 ~~e~~~~~~d~tL~sl-s~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Ler 430 (483)
T KOG4341|consen 352 DLEECGLITDGTLASL-SRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLER 430 (483)
T ss_pred cccccceehhhhHhhh-ccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccce
Confidence 77766543322 1111 456777777777777655533 3334556677777777777654 23345566777777
Q ss_pred EEecCCCHHHHHhhcc
Q 037018 644 LELHWPQPELRKRLRA 659 (663)
Q Consensus 644 L~l~~c~~~~~~~~~~ 659 (663)
+++.+|..-+.+.+++
T Consensus 431 i~l~~~q~vtk~~i~~ 446 (483)
T KOG4341|consen 431 IELIDCQDVTKEAISR 446 (483)
T ss_pred eeeechhhhhhhhhHH
Confidence 7777777665555544
No 27
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.03 E-value=7.6e-11 Score=115.41 Aligned_cols=247 Identities=17% Similarity=0.149 Sum_probs=143.9
Q ss_pred HHhcCCCcccEEEecCCcCc-----ccCccCCCCCCcCeEeccCCC----Cccchhhh-------cccccccEeeccCCc
Q 037018 366 NFCKKFKHLRVLNLGSAILY-----QYPPGLENLFHLKYLKLNIPS----LNCLPSLL-------CTLLNLQTLEMPASY 429 (663)
Q Consensus 366 ~~~~~l~~Lr~L~L~~~~l~-----~lp~~~~~l~~L~~L~L~~~~----i~~lp~~i-------~~L~~L~~L~L~~~~ 429 (663)
+....+..+..++|++|.|. .+-..+.+.++|+..+++.-- ..++|+.+ -.+++|++|+||.|-
T Consensus 24 ~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA 103 (382)
T KOG1909|consen 24 EELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNA 103 (382)
T ss_pred HHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccc
Confidence 33377888888888888875 333456666777777777521 11444332 234456666666652
Q ss_pred cc-c----cchhhhcCcCCcEEEccCCCCCCCCCCC-cCCCCCCcEeeCcCCCCCChhhcCCCCCccEEEeecCC--Ccc
Q 037018 430 ID-H----SPEGIWMMQKLMHLNFGSINLPAPPKNY-SSSLKNLIFISSLNPSSCTPDILGRLPNVQTLRISGDL--SHY 501 (663)
Q Consensus 430 l~-~----lp~~l~~l~~L~~L~l~~~~~~~~~~~~-l~~l~~L~~L~l~~~~~~~~~~l~~l~~L~~L~l~~~~--~~~ 501 (663)
++ . +-..+..+..|++|++. ||-.+..-.. ++. .|.+|. .....+.-++|+.+....|. +..
T Consensus 104 ~G~~g~~~l~~ll~s~~~L~eL~L~-N~Glg~~ag~~l~~--al~~l~-------~~kk~~~~~~Lrv~i~~rNrlen~g 173 (382)
T KOG1909|consen 104 FGPKGIRGLEELLSSCTDLEELYLN-NCGLGPEAGGRLGR--ALFELA-------VNKKAASKPKLRVFICGRNRLENGG 173 (382)
T ss_pred cCccchHHHHHHHHhccCHHHHhhh-cCCCChhHHHHHHH--HHHHHH-------HHhccCCCcceEEEEeecccccccc
Confidence 21 1 11224445555555555 4322111100 000 011111 11234455778888888774 222
Q ss_pred ccchhhhhcCCCCCCEEEEeecCccc-----cccccccccccCCCCceEEEEecccCCCCC----hhhhcCCCCCcEEEe
Q 037018 502 HSGVSKSLCELHKLECLQLVHEGRMW-----QLSRMVLSEYQFPPCLTQLSLSNTQLMEDP----MPALEKLPHLEVLKL 572 (663)
Q Consensus 502 ~~~~~~~l~~l~~L~~L~l~~~~~l~-----~lp~~~~~l~~~l~~L~~L~L~~~~l~~~~----~~~l~~l~~L~~L~L 572 (663)
...+...+...+.|+.+.+.. +.+. .+.. .+.. +++|+.|+|..|.++... ...+..+|+|+.|++
T Consensus 174 a~~~A~~~~~~~~leevr~~q-N~I~~eG~~al~e---al~~-~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l 248 (382)
T KOG1909|consen 174 ATALAEAFQSHPTLEEVRLSQ-NGIRPEGVTALAE---ALEH-CPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNL 248 (382)
T ss_pred HHHHHHHHHhccccceEEEec-ccccCchhHHHHH---HHHh-CCcceeeecccchhhhHHHHHHHHHhcccchheeecc
Confidence 334455667778888888886 5443 1222 4556 888999999888776543 345667888899999
Q ss_pred ecCCCCCceeeec---CCCCCCcccEEEccCCCCcc----ccccccccccccceEEeecCCC
Q 037018 573 KQNSYSERKLACV---GSGSFPQLKILHLKSMLWLE----EWTMGAGAMPKLESLIVNPCAY 627 (663)
Q Consensus 573 ~~~~~~~~~~~~~---~~~~~~~L~~L~L~~~~~l~----~l~~~~~~l~~L~~L~l~~c~~ 627 (663)
++|.+........ ....+|+|+.|.+.+|..-. .+.......|.|+.|+|++|..
T Consensus 249 ~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 249 GDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred cccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 8888765432111 03458899999998864333 2333455688999999999875
No 28
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.03 E-value=1.6e-11 Score=126.83 Aligned_cols=167 Identities=20% Similarity=0.284 Sum_probs=99.7
Q ss_pred EEecCCcCcccCccCCCCCCcCeEeccCCCCccchhhhcccccccEeeccCCcccccchhhhcCcCCcEEEccCCCCCCC
Q 037018 377 LNLGSAILYQYPPGLENLFHLKYLKLNIPSLNCLPSLLCTLLNLQTLEMPASYIDHSPEGIWMMQKLMHLNFGSINLPAP 456 (663)
Q Consensus 377 L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~ 456 (663)
.|++.|.+..+|..++.+..|..+.|..|.+..+|..++++..|.+|+++.|.+..+|..++.|+ |+.|-++ |+....
T Consensus 80 aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~s-NNkl~~ 157 (722)
T KOG0532|consen 80 ADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVS-NNKLTS 157 (722)
T ss_pred hhccccccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEe-cCcccc
Confidence 45555555556655555556666666666666666666666666666666666666666555554 5666666 555556
Q ss_pred CCCCcCCCCCCcEeeCcCCC-CCChhhcCCCCCccEEEeecCCCccccchhhhhcCCCCCCEEEEeecCccccccccccc
Q 037018 457 PKNYSSSLKNLIFISSLNPS-SCTPDILGRLPNVQTLRISGDLSHYHSGVSKSLCELHKLECLQLVHEGRMWQLSRMVLS 535 (663)
Q Consensus 457 ~~~~l~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~lp~~~~~ 535 (663)
+|..++.+..|..|+.+.|. ..++..++.+.+|+.|.+..| ....+|..+..+ .|..|+++ ||++..+|- .
T Consensus 158 lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn---~l~~lp~El~~L-pLi~lDfS-cNkis~iPv---~ 229 (722)
T KOG0532|consen 158 LPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRN---HLEDLPEELCSL-PLIRLDFS-CNKISYLPV---D 229 (722)
T ss_pred CCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhh---hhhhCCHHHhCC-ceeeeecc-cCceeecch---h
Confidence 66666655556666655555 555666666666666666655 444555555533 36666666 466666665 5
Q ss_pred cccCCCCceEEEEecccCC
Q 037018 536 EYQFPPCLTQLSLSNTQLM 554 (663)
Q Consensus 536 l~~~l~~L~~L~L~~~~l~ 554 (663)
+.+ ++.|+.|.|.+|.+.
T Consensus 230 fr~-m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 230 FRK-MRHLQVLQLENNPLQ 247 (722)
T ss_pred hhh-hhhheeeeeccCCCC
Confidence 666 666666666666653
No 29
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.00 E-value=4e-11 Score=120.39 Aligned_cols=37 Identities=19% Similarity=0.425 Sum_probs=16.9
Q ss_pred CCCcccEEEccCCCCcccccc--ccccccccceEEeecCC
Q 037018 589 SFPQLKILHLKSMLWLEEWTM--GAGAMPKLESLIVNPCA 626 (663)
Q Consensus 589 ~~~~L~~L~L~~~~~l~~l~~--~~~~l~~L~~L~l~~c~ 626 (663)
.|++|++|++..| .+..|+. .+..+++|+.|.+..+.
T Consensus 299 ~f~kL~~L~i~~N-~I~~w~sl~~l~~l~nlk~l~~~~n~ 337 (505)
T KOG3207|consen 299 TFPKLEYLNISEN-NIRDWRSLNHLRTLENLKHLRITLNY 337 (505)
T ss_pred ccccceeeecccC-ccccccccchhhccchhhhhhccccc
Confidence 4555555555553 2333322 23344555555554444
No 30
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.95 E-value=5.3e-11 Score=123.09 Aligned_cols=215 Identities=22% Similarity=0.297 Sum_probs=177.0
Q ss_pred cEEEecCCcCcccCcc--CCCCCCcCeEeccCCCCccchhhhcccccccEeeccCCcccccchhhhcCcCCcEEEccCCC
Q 037018 375 RVLNLGSAILYQYPPG--LENLFHLKYLKLNIPSLNCLPSLLCTLLNLQTLEMPASYIDHSPEGIWMMQKLMHLNFGSIN 452 (663)
Q Consensus 375 r~L~L~~~~l~~lp~~--~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~l~~~~ 452 (663)
-+|.|++-.++.+|.. -..+..-...+++.|.+.++|..++.+..|+.+.+..|.++.+|..+.++..|++|+++ -+
T Consensus 53 g~l~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls-~N 131 (722)
T KOG0532|consen 53 GRLLLSGRRLKEFPRGAASYDLTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLS-SN 131 (722)
T ss_pred cccccccchhhcCCCccccccccchhhhhccccccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhc-cc
Confidence 3466676666655532 23455667889999999999999999999999999999999999999999999999999 67
Q ss_pred CCCCCCCCcCCCCCCcEeeCcCCC-CCChhhcCCCCCccEEEeecCCCccccchhhhhcCCCCCCEEEEeecCccccccc
Q 037018 453 LPAPPKNYSSSLKNLIFISSLNPS-SCTPDILGRLPNVQTLRISGDLSHYHSGVSKSLCELHKLECLQLVHEGRMWQLSR 531 (663)
Q Consensus 453 ~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~lp~ 531 (663)
....+|..++.|+ |+.|-++++. ..+|+.++.++.|..|+.+.| ....+++-+..+.+|+.|.+.. +.+..+|.
T Consensus 132 qlS~lp~~lC~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~n---ei~slpsql~~l~slr~l~vrR-n~l~~lp~ 206 (722)
T KOG0532|consen 132 QLSHLPDGLCDLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKN---EIQSLPSQLGYLTSLRDLNVRR-NHLEDLPE 206 (722)
T ss_pred hhhcCChhhhcCc-ceeEEEecCccccCCcccccchhHHHhhhhhh---hhhhchHHhhhHHHHHHHHHhh-hhhhhCCH
Confidence 7888998898887 8888888888 899999999999999999998 6677889999999999999997 88999998
Q ss_pred cccccccCCCCceEEEEecccCCCCChhhhcCCCCCcEEEeecCCCCCceeeecCCCCCCcccEEEccCC
Q 037018 532 MVLSEYQFPPCLTQLSLSNTQLMEDPMPALEKLPHLEVLKLKQNSYSERKLACVGSGSFPQLKILHLKSM 601 (663)
Q Consensus 532 ~~~~l~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~ 601 (663)
.+.. ++ |..||+++|++. ..+..|.++..|++|-|.+|-+..-...+...+...=.|+|+..-|
T Consensus 207 ---El~~-Lp-Li~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 207 ---ELCS-LP-LIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred ---HHhC-Cc-eeeeecccCcee-ecchhhhhhhhheeeeeccCCCCCChHHHHhccceeeeeeecchhc
Confidence 6666 54 899999999974 5677899999999999998887764433221233445566766666
No 31
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.95 E-value=6.8e-10 Score=118.77 Aligned_cols=180 Identities=24% Similarity=0.262 Sum_probs=130.2
Q ss_pred hHHhcCCCcccEEEecCCcCcccCccCCCCC-CcCeEeccCCCCccchhhhcccccccEeeccCCcccccchhhhcCcCC
Q 037018 365 ENFCKKFKHLRVLNLGSAILYQYPPGLENLF-HLKYLKLNIPSLNCLPSLLCTLLNLQTLEMPASYIDHSPEGIWMMQKL 443 (663)
Q Consensus 365 ~~~~~~l~~Lr~L~L~~~~l~~lp~~~~~l~-~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~l~~l~~L 443 (663)
..+ ...+.+..|++.++.+..++...+.+. +|+.|++++|.+..+|..++.+++|+.|++++|.+..+|...+.+++|
T Consensus 110 ~~~-~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L 188 (394)
T COG4886 110 SEL-LELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNL 188 (394)
T ss_pred hhh-hcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhh
Confidence 444 566788999999998888888777774 899999999999988888888999999999999888888877788889
Q ss_pred cEEEccCCCCCCCCCCCcCCCCCCcEeeCcCCC-CCChhhcCCCCCccEEEeecCCCccccchhhhhcCCCCCCEEEEee
Q 037018 444 MHLNFGSINLPAPPKNYSSSLKNLIFISSLNPS-SCTPDILGRLPNVQTLRISGDLSHYHSGVSKSLCELHKLECLQLVH 522 (663)
Q Consensus 444 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~ 522 (663)
+.|+++ ++....+|..+.....|++|.+.++. ...+..+.+++++..+.+.++ .....+..+..+++|++|++++
T Consensus 189 ~~L~ls-~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n---~~~~~~~~~~~l~~l~~L~~s~ 264 (394)
T COG4886 189 NNLDLS-GNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNN---KLEDLPESIGNLSNLETLDLSN 264 (394)
T ss_pred hheecc-CCccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCc---eeeeccchhccccccceecccc
Confidence 999998 66677777666666667777777774 555556666666666665555 2233345555666666666664
Q ss_pred cCccccccccccccccCCCCceEEEEecccCCC
Q 037018 523 EGRMWQLSRMVLSEYQFPPCLTQLSLSNTQLME 555 (663)
Q Consensus 523 ~~~l~~lp~~~~~l~~~l~~L~~L~L~~~~l~~ 555 (663)
+.+..++ .+.. +.+|+.|+++++.+..
T Consensus 265 -n~i~~i~----~~~~-~~~l~~L~~s~n~~~~ 291 (394)
T COG4886 265 -NQISSIS----SLGS-LTNLRELDLSGNSLSN 291 (394)
T ss_pred -ccccccc----cccc-cCccCEEeccCccccc
Confidence 6666555 2444 5666666666665543
No 32
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.94 E-value=1.2e-10 Score=117.11 Aligned_cols=210 Identities=19% Similarity=0.154 Sum_probs=149.3
Q ss_pred ccCccCCCCCCcCeEeccCCCCccch--hhhcccccccEeeccCCccc---ccchhhhcCcCCcEEEccCCCCCCCCCCC
Q 037018 386 QYPPGLENLFHLKYLKLNIPSLNCLP--SLLCTLLNLQTLEMPASYID---HSPEGIWMMQKLMHLNFGSINLPAPPKNY 460 (663)
Q Consensus 386 ~lp~~~~~l~~L~~L~L~~~~i~~lp--~~i~~L~~L~~L~L~~~~l~---~lp~~l~~l~~L~~L~l~~~~~~~~~~~~ 460 (663)
++-.--.+++.|+...|.++.+...+ +....|++++.||+++|-+. .+-.....+|+|+.|+++.|.+.......
T Consensus 112 ki~akQsn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~ 191 (505)
T KOG3207|consen 112 KIAAKQSNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSN 191 (505)
T ss_pred HHHHHhhhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCcccc
Confidence 33333456889999999999888666 46778999999999999443 33344678999999999955443222221
Q ss_pred -cCCCCCCcEeeCcCCC---CCChhhcCCCCCccEEEeecCCCccccchhhhhcCCCCCCEEEEeecCcccccccccccc
Q 037018 461 -SSSLKNLIFISSLNPS---SCTPDILGRLPNVQTLRISGDLSHYHSGVSKSLCELHKLECLQLVHEGRMWQLSRMVLSE 536 (663)
Q Consensus 461 -l~~l~~L~~L~l~~~~---~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~lp~~~~~l 536 (663)
-..+++|+.|.++.|. ..+...+..+|+|+.|.+..|. ...........++.|++|+|++ +.+-.++. +...
T Consensus 192 ~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~--~~~~~~~~~~i~~~L~~LdLs~-N~li~~~~-~~~~ 267 (505)
T KOG3207|consen 192 TTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANE--IILIKATSTKILQTLQELDLSN-NNLIDFDQ-GYKV 267 (505)
T ss_pred chhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhccc--ccceecchhhhhhHHhhccccC-Cccccccc-cccc
Confidence 2357889999999998 4455566789999999999984 2222222334567899999998 66555552 1146
Q ss_pred ccCCCCceEEEEecccCCCCChh------hhcCCCCCcEEEeecCCCCCceeeecCCCCCCcccEEEccCC
Q 037018 537 YQFPPCLTQLSLSNTQLMEDPMP------ALEKLPHLEVLKLKQNSYSERKLACVGSGSFPQLKILHLKSM 601 (663)
Q Consensus 537 ~~~l~~L~~L~L~~~~l~~~~~~------~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~ 601 (663)
.. +++|+.|+++.|.+.+.... ....+|+|++|++..|.+.+....-. ...+++|+.|.+..+
T Consensus 268 ~~-l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~-l~~l~nlk~l~~~~n 336 (505)
T KOG3207|consen 268 GT-LPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNH-LRTLENLKHLRITLN 336 (505)
T ss_pred cc-ccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccch-hhccchhhhhhcccc
Confidence 66 99999999999987553222 24678999999999999877655444 566778888887653
No 33
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.93 E-value=1.2e-11 Score=118.01 Aligned_cols=183 Identities=19% Similarity=0.135 Sum_probs=118.8
Q ss_pred CCcEEEccCCCCCC-CCCCCcCCCCCCcEeeCcCCC--CCChhhcCCCCCccEEEeecCCCccccchhhhhcCCCCCCEE
Q 037018 442 KLMHLNFGSINLPA-PPKNYSSSLKNLIFISSLNPS--SCTPDILGRLPNVQTLRISGDLSHYHSGVSKSLCELHKLECL 518 (663)
Q Consensus 442 ~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L 518 (663)
+|++|++++..+.. .+-..+..|.+|+.|.+.+.. +.+...+..-.+|+.|+++.|.......+...+.+++.|.+|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 46777776322221 222234566677777777766 556667777788888888888644444555567788889999
Q ss_pred EEeecCccccc-cccccccccCCCCceEEEEeccc--CCCCChhh-hcCCCCCcEEEeecCCCCCceeeecCCCCCCccc
Q 037018 519 QLVHEGRMWQL-SRMVLSEYQFPPCLTQLSLSNTQ--LMEDPMPA-LEKLPHLEVLKLKQNSYSERKLACVGSGSFPQLK 594 (663)
Q Consensus 519 ~l~~~~~l~~l-p~~~~~l~~~l~~L~~L~L~~~~--l~~~~~~~-l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~ 594 (663)
+++||...+.. .. .+.+.-++|+.|+|++|. +....... ...+|+|..|+|++|.-........ +-.|+.|+
T Consensus 266 NlsWc~l~~~~Vtv---~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~-~~kf~~L~ 341 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTV---AVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQE-FFKFNYLQ 341 (419)
T ss_pred CchHhhccchhhhH---HHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHH-HHhcchhe
Confidence 99987666532 22 233335688889998874 22233333 4578899999998765433322222 56788889
Q ss_pred EEEccCCCCcc-ccccccccccccceEEeecCCCC
Q 037018 595 ILHLKSMLWLE-EWTMGAGAMPKLESLIVNPCAYL 628 (663)
Q Consensus 595 ~L~L~~~~~l~-~l~~~~~~l~~L~~L~l~~c~~l 628 (663)
+|.++.|..+. +.-..+...|+|.+|++.+|---
T Consensus 342 ~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~vsd 376 (419)
T KOG2120|consen 342 HLSLSRCYDIIPETLLELNSKPSLVYLDVFGCVSD 376 (419)
T ss_pred eeehhhhcCCChHHeeeeccCcceEEEEeccccCc
Confidence 99998886654 33345778888999988888543
No 34
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.90 E-value=4.2e-10 Score=107.65 Aligned_cols=129 Identities=26% Similarity=0.277 Sum_probs=57.4
Q ss_pred CCCCCccEEEeecCCCccccchhhhhcCCCCCCEEEEeecCccccccccccccccCCCCceEEEEecccCCCCChhhhcC
Q 037018 484 GRLPNVQTLRISGDLSHYHSGVSKSLCELHKLECLQLVHEGRMWQLSRMVLSEYQFPPCLTQLSLSNTQLMEDPMPALEK 563 (663)
Q Consensus 484 ~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~lp~~~~~l~~~l~~L~~L~L~~~~l~~~~~~~l~~ 563 (663)
...+.|+.|++++| ....+..+..-.+.++.|+++. |.+..+. .+.. +++|+.|++++|.+. ....+-..
T Consensus 281 dTWq~LtelDLS~N---~I~~iDESvKL~Pkir~L~lS~-N~i~~v~----nLa~-L~~L~~LDLS~N~Ls-~~~Gwh~K 350 (490)
T KOG1259|consen 281 DTWQELTELDLSGN---LITQIDESVKLAPKLRRLILSQ-NRIRTVQ----NLAE-LPQLQLLDLSGNLLA-ECVGWHLK 350 (490)
T ss_pred chHhhhhhcccccc---chhhhhhhhhhccceeEEeccc-cceeeeh----hhhh-cccceEeecccchhH-hhhhhHhh
Confidence 33444555555554 2333333444445555555554 4444333 2333 555555555555432 12222234
Q ss_pred CCCCcEEEeecCCCCCceeeecCCCCCCcccEEEccCCCCccccc--cccccccccceEEeecCCC
Q 037018 564 LPHLEVLKLKQNSYSERKLACVGSGSFPQLKILHLKSMLWLEEWT--MGAGAMPKLESLIVNPCAY 627 (663)
Q Consensus 564 l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~--~~~~~l~~L~~L~l~~c~~ 627 (663)
+-+++.|.|++|.+.+. +|++.+-+|..|++++| +++.+. ..++++|.|+.|.+.+||.
T Consensus 351 LGNIKtL~La~N~iE~L----SGL~KLYSLvnLDl~~N-~Ie~ldeV~~IG~LPCLE~l~L~~NPl 411 (490)
T KOG1259|consen 351 LGNIKTLKLAQNKIETL----SGLRKLYSLVNLDLSSN-QIEELDEVNHIGNLPCLETLRLTGNPL 411 (490)
T ss_pred hcCEeeeehhhhhHhhh----hhhHhhhhheecccccc-chhhHHHhcccccccHHHHHhhcCCCc
Confidence 44555555554443221 01233445555555552 333322 2345555555555555553
No 35
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.89 E-value=1.7e-09 Score=115.66 Aligned_cols=195 Identities=26% Similarity=0.278 Sum_probs=138.5
Q ss_pred EEEecCCcCcccCccCCCCCCcCeEeccCCCCccchhhhcccc-cccEeeccCCcccccchhhhcCcCCcEEEccCCCCC
Q 037018 376 VLNLGSAILYQYPPGLENLFHLKYLKLNIPSLNCLPSLLCTLL-NLQTLEMPASYIDHSPEGIWMMQKLMHLNFGSINLP 454 (663)
Q Consensus 376 ~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~-~L~~L~L~~~~l~~lp~~l~~l~~L~~L~l~~~~~~ 454 (663)
.+++..+.+...+..+..+..++.|++.++.+..+|...+.+. +|+.|+++++.+..+|..++.+++|+.|+++ ++..
T Consensus 97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~-~N~l 175 (394)
T COG4886 97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLS-FNDL 175 (394)
T ss_pred eeeccccccccCchhhhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccC-Cchh
Confidence 4666666654333445555778888888888888887777774 8888888888888887777888888888888 6666
Q ss_pred CCCCCCcCCCCCCcEeeCcCCC-CCChhhcCCCCCccEEEeecCCCccccchhhhhcCCCCCCEEEEeecCccccccccc
Q 037018 455 APPKNYSSSLKNLIFISSLNPS-SCTPDILGRLPNVQTLRISGDLSHYHSGVSKSLCELHKLECLQLVHEGRMWQLSRMV 533 (663)
Q Consensus 455 ~~~~~~l~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~lp~~~ 533 (663)
..+|...+..++|+.|+++++. ..++...+....|++|.+.++ .....+..+.++.++..|.+.. +.+..++.
T Consensus 176 ~~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N---~~~~~~~~~~~~~~l~~l~l~~-n~~~~~~~-- 249 (394)
T COG4886 176 SDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNN---SIIELLSSLSNLKNLSGLELSN-NKLEDLPE-- 249 (394)
T ss_pred hhhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCC---cceecchhhhhcccccccccCC-ceeeeccc--
Confidence 6676666677788888888877 666666556666888888776 2344555666777777777664 66666565
Q ss_pred cccccCCCCceEEEEecccCCCCChhhhcCCCCCcEEEeecCCCCCce
Q 037018 534 LSEYQFPPCLTQLSLSNTQLMEDPMPALEKLPHLEVLKLKQNSYSERK 581 (663)
Q Consensus 534 ~~l~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~ 581 (663)
.+.. +++++.|++++|.+..... ++.+.+|+.|+++++.+....
T Consensus 250 -~~~~-l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~ 293 (394)
T COG4886 250 -SIGN-LSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNAL 293 (394)
T ss_pred -hhcc-ccccceecccccccccccc--ccccCccCEEeccCccccccc
Confidence 6666 7778888888887654333 777888888888877765443
No 36
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.89 E-value=3.4e-10 Score=110.94 Aligned_cols=236 Identities=21% Similarity=0.192 Sum_probs=134.5
Q ss_pred CCcccEEEeecCccccccccchhHHhcCCCcccEEEecCCcC---c-ccC-------ccCCCCCCcCeEeccCCCCc---
Q 037018 343 DMYLQSFLNHTLESDRLALIDCENFCKKFKHLRVLNLGSAIL---Y-QYP-------PGLENLFHLKYLKLNIPSLN--- 408 (663)
Q Consensus 343 ~~~lr~L~l~~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~l---~-~lp-------~~~~~l~~L~~L~L~~~~i~--- 408 (663)
...+..+.++++.+..-....+...+.+-+.|+..++++--. . .+| +.+-.+++|++|+||.|-+.
T Consensus 29 ~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g 108 (382)
T KOG1909|consen 29 MDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKG 108 (382)
T ss_pred cCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccc
Confidence 788999999999886433334444458889999999987531 1 444 34456789999999999776
Q ss_pred --cchhhhcccccccEeeccCCcccccchh--------------hhcCcCCcEEEccCCCCCCCCCCCcCCCCCCcEeeC
Q 037018 409 --CLPSLLCTLLNLQTLEMPASYIDHSPEG--------------IWMMQKLMHLNFGSINLPAPPKNYSSSLKNLIFISS 472 (663)
Q Consensus 409 --~lp~~i~~L~~L~~L~L~~~~l~~lp~~--------------l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 472 (663)
.+-.-+..+..|++|.+.+|.++..... +..-++|+.+... +|.....+.
T Consensus 109 ~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~-rNrlen~ga------------- 174 (382)
T KOG1909|consen 109 IRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICG-RNRLENGGA------------- 174 (382)
T ss_pred hHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEee-ccccccccH-------------
Confidence 3445567889999999999976543221 1223445555554 222211111
Q ss_pred cCCCCCChhhcCCCCCccEEEeecCCC--ccccchhhhhcCCCCCCEEEEeecCccc-----cccccccccccCCCCceE
Q 037018 473 LNPSSCTPDILGRLPNVQTLRISGDLS--HYHSGVSKSLCELHKLECLQLVHEGRMW-----QLSRMVLSEYQFPPCLTQ 545 (663)
Q Consensus 473 ~~~~~~~~~~l~~l~~L~~L~l~~~~~--~~~~~~~~~l~~l~~L~~L~l~~~~~l~-----~lp~~~~~l~~~l~~L~~ 545 (663)
..+...+...+.|+.+.+..|.. .....+...+..+++|+.|+|.. |.++ .+.. .+.. +++|+.
T Consensus 175 ----~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~D-Ntft~egs~~Lak---aL~s-~~~L~E 245 (382)
T KOG1909|consen 175 ----TALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRD-NTFTLEGSVALAK---ALSS-WPHLRE 245 (382)
T ss_pred ----HHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeeccc-chhhhHHHHHHHH---Hhcc-cchhee
Confidence 12233444455555555555531 11123344555566666666664 4443 1222 2333 566666
Q ss_pred EEEecccCCCCChhhh-----cCCCCCcEEEeecCCCCCcee---eecCCCCCCcccEEEccCCC
Q 037018 546 LSLSNTQLMEDPMPAL-----EKLPHLEVLKLKQNSYSERKL---ACVGSGSFPQLKILHLKSML 602 (663)
Q Consensus 546 L~L~~~~l~~~~~~~l-----~~l~~L~~L~L~~~~~~~~~~---~~~~~~~~~~L~~L~L~~~~ 602 (663)
|++++|.+.......+ ...|+|+.|.+.+|.++.... ... ....|.|+.|+|++|.
T Consensus 246 l~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~-~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 246 LNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAAC-MAEKPDLEKLNLNGNR 309 (382)
T ss_pred ecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHH-HhcchhhHHhcCCccc
Confidence 6666666554433322 235667777777666653221 111 2346667777777653
No 37
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.87 E-value=1.2e-09 Score=100.50 Aligned_cols=126 Identities=23% Similarity=0.224 Sum_probs=41.5
Q ss_pred cCCCcccEEEecCCcCcccCccCC-CCCCcCeEeccCCCCccchhhhcccccccEeeccCCcccccchhh-hcCcCCcEE
Q 037018 369 KKFKHLRVLNLGSAILYQYPPGLE-NLFHLKYLKLNIPSLNCLPSLLCTLLNLQTLEMPASYIDHSPEGI-WMMQKLMHL 446 (663)
Q Consensus 369 ~~l~~Lr~L~L~~~~l~~lp~~~~-~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~l-~~l~~L~~L 446 (663)
.+..+++.|+|.++.++.+. .++ .+.+|+.|++++|.|+.++ .+..+++|++|++++|.+..++..+ ..+++|++|
T Consensus 16 ~n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L 93 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQEL 93 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-CHHHHHH-TT--EE
T ss_pred cccccccccccccccccccc-chhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccccchHHhCCcCCEE
Confidence 45567888888888887653 454 5778888888888888776 5677888888888888888886555 368888888
Q ss_pred EccCCCCCC-CCCCCcCCCCCCcEeeCcCCC-----CCChhhcCCCCCccEEEeec
Q 037018 447 NFGSINLPA-PPKNYSSSLKNLIFISSLNPS-----SCTPDILGRLPNVQTLRISG 496 (663)
Q Consensus 447 ~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~-----~~~~~~l~~l~~L~~L~l~~ 496 (663)
++++|.+.. .--..+..+++|+.|++.+|+ .+-...+..+|+|+.|+-..
T Consensus 94 ~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 94 YLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQD 149 (175)
T ss_dssp E-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEE
T ss_pred ECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEE
Confidence 888443311 112334555666666666555 11222334455555554443
No 38
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.82 E-value=9.4e-10 Score=105.28 Aligned_cols=227 Identities=18% Similarity=0.166 Sum_probs=125.5
Q ss_pred chhHHhcCCCcccEEEecCCc--Cc-------ccCccCCCCCCcCeEeccCCCCccchhhhcccccccEeeccCCccccc
Q 037018 363 DCENFCKKFKHLRVLNLGSAI--LY-------QYPPGLENLFHLKYLKLNIPSLNCLPSLLCTLLNLQTLEMPASYIDHS 433 (663)
Q Consensus 363 ~l~~~~~~l~~Lr~L~L~~~~--l~-------~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~l 433 (663)
++..++.-+..|.+|.+++.. +. .+|-.+.-+++|+.+.++.|.-..+-.....-+.|+++.+.+..+...
T Consensus 173 d~~hildf~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~~~i~~~~~~kptl~t~~v~~s~~~~~ 252 (490)
T KOG1259|consen 173 DFSHVLDFCTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALSTENIVDIELLKPTLQTICVHNTTIQDV 252 (490)
T ss_pred chHHHHHhhhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccchhheeceeecCchhheeeeeccccccc
Confidence 345555556777777777653 21 223233334555666565554333322222234556665555433332
Q ss_pred chhhhcCcCCcEEEccC-CCCCCCCCCCcCCCCCCcEeeCcCCC-CCChhhcCCCCCccEEEeecCCCccccchhhhhcC
Q 037018 434 PEGIWMMQKLMHLNFGS-INLPAPPKNYSSSLKNLIFISSLNPS-SCTPDILGRLPNVQTLRISGDLSHYHSGVSKSLCE 511 (663)
Q Consensus 434 p~~l~~l~~L~~L~l~~-~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~ 511 (663)
|. +-...++..+.-+. ....+.....+.....|++++++++. ..+.+...-.|.++.|+++.|. .. .. ..++.
T Consensus 253 ~~-l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~--i~-~v-~nLa~ 327 (490)
T KOG1259|consen 253 PS-LLPETILADPSGSEPSTSNGSALVSADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNR--IR-TV-QNLAE 327 (490)
T ss_pred cc-ccchhhhcCccCCCCCccCCceEEecchHhhhhhccccccchhhhhhhhhhccceeEEeccccc--ee-ee-hhhhh
Confidence 21 11111121111110 00112222234445667777777777 6666666667777777777762 21 11 23566
Q ss_pred CCCCCEEEEeecCccccccccccccccCCCCceEEEEecccCCCCChhhhcCCCCCcEEEeecCCCCCceeeecCCCCCC
Q 037018 512 LHKLECLQLVHEGRMWQLSRMVLSEYQFPPCLTQLSLSNTQLMEDPMPALEKLPHLEVLKLKQNSYSERKLACVGSGSFP 591 (663)
Q Consensus 512 l~~L~~L~l~~~~~l~~lp~~~~~l~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~ 591 (663)
+++|+.|++++ |.++.+.. |-.. +-|++.|.++.|.+ ..+..++.+-+|..|++++|++........ ++.+|
T Consensus 328 L~~L~~LDLS~-N~Ls~~~G---wh~K-LGNIKtL~La~N~i--E~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~-IG~LP 399 (490)
T KOG1259|consen 328 LPQLQLLDLSG-NLLAECVG---WHLK-LGNIKTLKLAQNKI--ETLSGLRKLYSLVNLDLSSNQIEELDEVNH-IGNLP 399 (490)
T ss_pred cccceEeeccc-chhHhhhh---hHhh-hcCEeeeehhhhhH--hhhhhhHhhhhheeccccccchhhHHHhcc-ccccc
Confidence 77777777775 77776665 6556 77777777777765 345566677777777777777765443333 67777
Q ss_pred cccEEEccCCC
Q 037018 592 QLKILHLKSML 602 (663)
Q Consensus 592 ~L~~L~L~~~~ 602 (663)
.|+.|.|.+|+
T Consensus 400 CLE~l~L~~NP 410 (490)
T KOG1259|consen 400 CLETLRLTGNP 410 (490)
T ss_pred HHHHHhhcCCC
Confidence 77777777754
No 39
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.75 E-value=2.5e-10 Score=109.20 Aligned_cols=181 Identities=19% Similarity=0.174 Sum_probs=137.4
Q ss_pred CCCcEeeCcCCC---CCChhhcCCCCCccEEEeecCCCccccchhhhhcCCCCCCEEEEeecCccccccccccccccCCC
Q 037018 465 KNLIFISSLNPS---SCTPDILGRLPNVQTLRISGDLSHYHSGVSKSLCELHKLECLQLVHEGRMWQLSRMVLSEYQFPP 541 (663)
Q Consensus 465 ~~L~~L~l~~~~---~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~lp~~~~~l~~~l~ 541 (663)
+.||.|+++... ..+...+..|.+|+.|.+.++ ...+.+...+++-.+|+.|++++|+.++....- +.+.+ ++
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~--~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~-ll~~s-cs 260 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGL--RLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQ-LLLSS-CS 260 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhcccccc--ccCcHHHHHHhccccceeeccccccccchhHHH-HHHHh-hh
Confidence 358889988766 445556788999999999999 688888889999999999999999998853310 03456 99
Q ss_pred CceEEEEecccCCCCChhhh--cCCCCCcEEEeecCCC--CCceeeecCCCCCCcccEEEccCCCCccc-cccccccccc
Q 037018 542 CLTQLSLSNTQLMEDPMPAL--EKLPHLEVLKLKQNSY--SERKLACVGSGSFPQLKILHLKSMLWLEE-WTMGAGAMPK 616 (663)
Q Consensus 542 ~L~~L~L~~~~l~~~~~~~l--~~l~~L~~L~L~~~~~--~~~~~~~~~~~~~~~L~~L~L~~~~~l~~-l~~~~~~l~~ 616 (663)
.|.+|+|+.|.+.......+ .--++|..|+|+|+.- ........ ...+|+|.+|+|++|..++. ....+-.++.
T Consensus 261 ~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL-~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~ 339 (419)
T KOG2120|consen 261 RLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTL-VRRCPNLVHLDLSDSVMLKNDCFQEFFKFNY 339 (419)
T ss_pred hHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHH-HHhCCceeeeccccccccCchHHHHHHhcch
Confidence 99999999998755443222 2246899999998642 11122222 46799999999999988884 4455778999
Q ss_pred cceEEeecCCCCCCCcc---ccCCCCCCCEEEecCCCHH
Q 037018 617 LESLIVNPCAYLRKLPE---ELWCIKSLCKLELHWPQPE 652 (663)
Q Consensus 617 L~~L~l~~c~~l~~l~~---~l~~l~sL~~L~l~~c~~~ 652 (663)
|++|.++.|..+. |+ .+...|+|.+|++.||-.+
T Consensus 340 L~~lSlsRCY~i~--p~~~~~l~s~psl~yLdv~g~vsd 376 (419)
T KOG2120|consen 340 LQHLSLSRCYDII--PETLLELNSKPSLVYLDVFGCVSD 376 (419)
T ss_pred heeeehhhhcCCC--hHHeeeeccCcceEEEEeccccCc
Confidence 9999999998664 33 4577899999999998754
No 40
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.69 E-value=6.6e-10 Score=111.23 Aligned_cols=238 Identities=18% Similarity=0.155 Sum_probs=149.1
Q ss_pred cccccccEeeccCC-ccccc--chhhhcCcCCcEEEccCCCC--CCC-CCCCcCCCCCCcEeeCcCCC----CCChhhcC
Q 037018 415 CTLLNLQTLEMPAS-YIDHS--PEGIWMMQKLMHLNFGSINL--PAP-PKNYSSSLKNLIFISSLNPS----SCTPDILG 484 (663)
Q Consensus 415 ~~L~~L~~L~L~~~-~l~~l--p~~l~~l~~L~~L~l~~~~~--~~~-~~~~l~~l~~L~~L~l~~~~----~~~~~~l~ 484 (663)
.+++++++|++.+| .++.- ...-..+++|++|++. +|. +.. +......+++|++|+++.|+ ..+-....
T Consensus 161 ~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~-~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~r 239 (483)
T KOG4341|consen 161 SNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLH-SCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQR 239 (483)
T ss_pred hhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhc-ccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhc
Confidence 34555555555555 33221 1112345566666655 322 111 11122346667777777666 23334456
Q ss_pred CCCCccEEEeecCCCccccchhhhhcCCCCCCEEEEeecCccccccccccc-cccCCCCceEEEEeccc-CCCCChhhh-
Q 037018 485 RLPNVQTLRISGDLSHYHSGVSKSLCELHKLECLQLVHEGRMWQLSRMVLS-EYQFPPCLTQLSLSNTQ-LMEDPMPAL- 561 (663)
Q Consensus 485 ~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~lp~~~~~-l~~~l~~L~~L~L~~~~-l~~~~~~~l- 561 (663)
++.+++.+...||.....+.+...-+.+..+..+++..|+.++...- | +...+..|+.|+.++|. +++.....+
T Consensus 240 G~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~---~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg 316 (483)
T KOG4341|consen 240 GCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDL---WLIACGCHALQVLCYSSCTDITDEVLWALG 316 (483)
T ss_pred cchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHH---HHHhhhhhHhhhhcccCCCCCchHHHHHHh
Confidence 67778888778885333344444444556677777777777764432 2 22237889999999985 344444444
Q ss_pred cCCCCCcEEEeecCC-CCCceeeecCCCCCCcccEEEccCCCCcc--ccccccccccccceEEeecCCCCCCC-----cc
Q 037018 562 EKLPHLEVLKLKQNS-YSERKLACVGSGSFPQLKILHLKSMLWLE--EWTMGAGAMPKLESLIVNPCAYLRKL-----PE 633 (663)
Q Consensus 562 ~~l~~L~~L~L~~~~-~~~~~~~~~~~~~~~~L~~L~L~~~~~l~--~l~~~~~~l~~L~~L~l~~c~~l~~l-----~~ 633 (663)
.++++|+.|.+.+|. +++..+... ..+++.|+.+++..|..+. ++..-..++|.|+.|.++.|...+.. ..
T Consensus 317 ~~~~~L~~l~l~~c~~fsd~~ft~l-~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~ 395 (483)
T KOG4341|consen 317 QHCHNLQVLELSGCQQFSDRGFTML-GRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSS 395 (483)
T ss_pred cCCCceEEEeccccchhhhhhhhhh-hcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhh
Confidence 468999999999886 455554444 5678899999999986555 34445668999999999999877643 33
Q ss_pred ccCCCCCCCEEEecCCCHHHHHhh
Q 037018 634 ELWCIKSLCKLELHWPQPELRKRL 657 (663)
Q Consensus 634 ~l~~l~sL~~L~l~~c~~~~~~~~ 657 (663)
.-.+...|+.+.+++||......+
T Consensus 396 ~~c~~~~l~~lEL~n~p~i~d~~L 419 (483)
T KOG4341|consen 396 SSCSLEGLEVLELDNCPLITDATL 419 (483)
T ss_pred ccccccccceeeecCCCCchHHHH
Confidence 445677899999999995544433
No 41
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.68 E-value=9e-09 Score=94.80 Aligned_cols=84 Identities=30% Similarity=0.347 Sum_probs=20.9
Q ss_pred CCCCCEEEEeecCccccccccccccccCCCCceEEEEecccCCCCChhhhcCCCCCcEEEeecCCCCCceeeecCCCCCC
Q 037018 512 LHKLECLQLVHEGRMWQLSRMVLSEYQFPPCLTQLSLSNTQLMEDPMPALEKLPHLEVLKLKQNSYSERKLACVGSGSFP 591 (663)
Q Consensus 512 l~~L~~L~l~~~~~l~~lp~~~~~l~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~ 591 (663)
+.+|+.|++++ +.++.++ .+.. +++|+.|++++|.++.........+|+|+.|++++|.+.+..-... +..++
T Consensus 41 l~~L~~L~Ls~-N~I~~l~----~l~~-L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~-L~~l~ 113 (175)
T PF14580_consen 41 LDKLEVLDLSN-NQITKLE----GLPG-LPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSNNKISDLNELEP-LSSLP 113 (175)
T ss_dssp -TT--EEE-TT-S--S--T----T-----TT--EEE--SS---S-CHHHHHH-TT--EEE-TTS---SCCCCGG-GGG-T
T ss_pred hcCCCEEECCC-CCCcccc----CccC-hhhhhhcccCCCCCCccccchHHhCCcCCEEECcCCcCCChHHhHH-HHcCC
Confidence 34444555543 4444443 2333 4455555555554433221111234555555555444433221111 33444
Q ss_pred cccEEEccCCC
Q 037018 592 QLKILHLKSML 602 (663)
Q Consensus 592 ~L~~L~L~~~~ 602 (663)
+|+.|+|.+|+
T Consensus 114 ~L~~L~L~~NP 124 (175)
T PF14580_consen 114 KLRVLSLEGNP 124 (175)
T ss_dssp T--EEE-TT-G
T ss_pred CcceeeccCCc
Confidence 44444444443
No 42
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.30 E-value=1.8e-07 Score=89.88 Aligned_cols=65 Identities=20% Similarity=0.231 Sum_probs=30.9
Q ss_pred CCCceEEEEecccCCCC-ChhhhcCCCCCcEEEeecCCCCCceeeecCCCCCCcccEEEccCCCCcc
Q 037018 540 PPCLTQLSLSNTQLMED-PMPALEKLPHLEVLKLKQNSYSERKLACVGSGSFPQLKILHLKSMLWLE 605 (663)
Q Consensus 540 l~~L~~L~L~~~~l~~~-~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~ 605 (663)
+|++..+-+..|++... .......+|.+-.|.|+.+++.++...-. +.+|++|..|.+++++.+.
T Consensus 198 Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~-Ln~f~~l~dlRv~~~Pl~d 263 (418)
T KOG2982|consen 198 FPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDA-LNGFPQLVDLRVSENPLSD 263 (418)
T ss_pred cccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHH-HcCCchhheeeccCCcccc
Confidence 55566666666654332 12233444555555555555444332222 4455555555555544433
No 43
>PLN03150 hypothetical protein; Provisional
Probab=98.28 E-value=1.5e-06 Score=97.76 Aligned_cols=101 Identities=17% Similarity=0.248 Sum_probs=60.4
Q ss_pred cCeEeccCCCCc-cchhhhcccccccEeeccCCcc-cccchhhhcCcCCcEEEccCCCCCCCCCCCcCCCCCCcEeeCcC
Q 037018 397 LKYLKLNIPSLN-CLPSLLCTLLNLQTLEMPASYI-DHSPEGIWMMQKLMHLNFGSINLPAPPKNYSSSLKNLIFISSLN 474 (663)
Q Consensus 397 L~~L~L~~~~i~-~lp~~i~~L~~L~~L~L~~~~l-~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 474 (663)
++.|+|+++.+. .+|..++.+++|+.|+|++|.+ +.+|..++.+++|+.|++++|.+.+.+|..++++++|+.|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 555666666655 5566666666666666666644 35565666666666666665555556666666666666666666
Q ss_pred CC--CCChhhcCCC-CCccEEEeecC
Q 037018 475 PS--SCTPDILGRL-PNVQTLRISGD 497 (663)
Q Consensus 475 ~~--~~~~~~l~~l-~~L~~L~l~~~ 497 (663)
|. +.+|..++.+ .++..+++.+|
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N 525 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDN 525 (623)
T ss_pred CcccccCChHHhhccccCceEEecCC
Confidence 65 4555555432 34555666655
No 44
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.28 E-value=9.9e-08 Score=91.68 Aligned_cols=199 Identities=17% Similarity=0.171 Sum_probs=95.7
Q ss_pred CCCcCeEeccCCCCc---cchhhhcccccccEeeccCCcc----cccchhhhcCcCCcEEEccCCCCCC-CCCCCcCCCC
Q 037018 394 LFHLKYLKLNIPSLN---CLPSLLCTLLNLQTLEMPASYI----DHSPEGIWMMQKLMHLNFGSINLPA-PPKNYSSSLK 465 (663)
Q Consensus 394 l~~L~~L~L~~~~i~---~lp~~i~~L~~L~~L~L~~~~l----~~lp~~l~~l~~L~~L~l~~~~~~~-~~~~~l~~l~ 465 (663)
+.+++.|+|.+|.|+ ++-..+.+++.|++|+++.|.+ +.+| ..+.+|+.|.+.+..... .....+..++
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp---~p~~nl~~lVLNgT~L~w~~~~s~l~~lP 146 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP---LPLKNLRVLVLNGTGLSWTQSTSSLDDLP 146 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCc---ccccceEEEEEcCCCCChhhhhhhhhcch
Confidence 345555555555555 2222334555555555555532 2222 133455555555222211 1222233445
Q ss_pred CCcEeeCcCCC----CCChhhcCC-CCCccEEEeecCCCccccchhhhhcCCCCCCEEEEeecCccccccccccccccCC
Q 037018 466 NLIFISSLNPS----SCTPDILGR-LPNVQTLRISGDLSHYHSGVSKSLCELHKLECLQLVHEGRMWQLSRMVLSEYQFP 540 (663)
Q Consensus 466 ~L~~L~l~~~~----~~~~~~l~~-l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~lp~~~~~l~~~l 540 (663)
.+++|+++.+. ..-...... -+.+++|+...|...........-..++++..+.+.. +.+.....+ ..... +
T Consensus 147 ~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e-~PlK~~s~e-k~se~-~ 223 (418)
T KOG2982|consen 147 KVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCE-GPLKTESSE-KGSEP-F 223 (418)
T ss_pred hhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeec-Ccccchhhc-ccCCC-C
Confidence 55555554443 000011111 1345566666663111111222223457777777765 544433210 02223 6
Q ss_pred CCceEEEEecccCCC-CChhhhcCCCCCcEEEeecCCCCCce-----eeecCCCCCCcccEEEcc
Q 037018 541 PCLTQLSLSNTQLME-DPMPALEKLPHLEVLKLKQNSYSERK-----LACVGSGSFPQLKILHLK 599 (663)
Q Consensus 541 ~~L~~L~L~~~~l~~-~~~~~l~~l~~L~~L~L~~~~~~~~~-----~~~~~~~~~~~L~~L~L~ 599 (663)
|.+..|+|+.+++.. .....+.++|+|..|.++.+.+.+.. .... ++.+++++.|+=+
T Consensus 224 p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~ll-IaRL~~v~vLNGs 287 (418)
T KOG2982|consen 224 PSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLL-IARLTKVQVLNGS 287 (418)
T ss_pred CcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEE-EeeccceEEecCc
Confidence 666678888877644 34567788888888888876654321 1111 4556666666544
No 45
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.26 E-value=1e-06 Score=66.40 Aligned_cols=58 Identities=29% Similarity=0.485 Sum_probs=35.0
Q ss_pred CcccEEEecCCcCcccCc-cCCCCCCcCeEeccCCCCccch-hhhcccccccEeeccCCc
Q 037018 372 KHLRVLNLGSAILYQYPP-GLENLFHLKYLKLNIPSLNCLP-SLLCTLLNLQTLEMPASY 429 (663)
Q Consensus 372 ~~Lr~L~L~~~~l~~lp~-~~~~l~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~ 429 (663)
|+|++|++++|.++.+|. .|..+++|++|++++|.++.+| ..+..+++|++|++++|.
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 456666666666665553 4566666666666666666554 345566666666666653
No 46
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.14 E-value=2.1e-06 Score=64.69 Aligned_cols=57 Identities=23% Similarity=0.331 Sum_probs=50.2
Q ss_pred CCcCeEeccCCCCccch-hhhcccccccEeeccCCcccccch-hhhcCcCCcEEEccCC
Q 037018 395 FHLKYLKLNIPSLNCLP-SLLCTLLNLQTLEMPASYIDHSPE-GIWMMQKLMHLNFGSI 451 (663)
Q Consensus 395 ~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~l~~lp~-~l~~l~~L~~L~l~~~ 451 (663)
++|++|++++|.++.+| ..+..+++|++|++++|.+..++. .|..+++|++|++++|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 57999999999999998 577899999999999999888875 5789999999999954
No 47
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.11 E-value=2.8e-07 Score=98.95 Aligned_cols=79 Identities=25% Similarity=0.332 Sum_probs=34.4
Q ss_pred cCCCcccEEEecCCcCcccCccCCCCCCcCeEeccCCCCccchhhhcccccccEeeccCCcccccchhhhcCcCCcEEEc
Q 037018 369 KKFKHLRVLNLGSAILYQYPPGLENLFHLKYLKLNIPSLNCLPSLLCTLLNLQTLEMPASYIDHSPEGIWMMQKLMHLNF 448 (663)
Q Consensus 369 ~~l~~Lr~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~l 448 (663)
..+++|..|++.+|.++.+...+..+++|++|++++|.|+.+. .+..+..|+.|++.+|.+..+. .+..+++|+.+++
T Consensus 92 ~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~~N~i~~~~-~~~~l~~L~~l~l 169 (414)
T KOG0531|consen 92 SKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLSGNLISDIS-GLESLKSLKLLDL 169 (414)
T ss_pred ccccceeeeeccccchhhcccchhhhhcchheecccccccccc-chhhccchhhheeccCcchhcc-CCccchhhhcccC
Confidence 3444444444444444433322444444444444444444443 3333444444444444444332 2223444444444
Q ss_pred c
Q 037018 449 G 449 (663)
Q Consensus 449 ~ 449 (663)
+
T Consensus 170 ~ 170 (414)
T KOG0531|consen 170 S 170 (414)
T ss_pred C
Confidence 4
No 48
>PLN03150 hypothetical protein; Provisional
Probab=98.09 E-value=5.3e-06 Score=93.37 Aligned_cols=112 Identities=21% Similarity=0.226 Sum_probs=86.2
Q ss_pred CCCEEEEeecCcc-ccccccccccccCCCCceEEEEecccCCCCChhhhcCCCCCcEEEeecCCCCCceeeecCCCCCCc
Q 037018 514 KLECLQLVHEGRM-WQLSRMVLSEYQFPPCLTQLSLSNTQLMEDPMPALEKLPHLEVLKLKQNSYSERKLACVGSGSFPQ 592 (663)
Q Consensus 514 ~L~~L~l~~~~~l-~~lp~~~~~l~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~ 592 (663)
.++.|+|++ +.+ ..+|. .+.. +++|+.|+|++|.+.+..+..++.+++|+.|+|++|.+.+..+.. ++.+++
T Consensus 419 ~v~~L~L~~-n~L~g~ip~---~i~~-L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~--l~~L~~ 491 (623)
T PLN03150 419 FIDGLGLDN-QGLRGFIPN---DISK-LRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPES--LGQLTS 491 (623)
T ss_pred EEEEEECCC-CCccccCCH---HHhC-CCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchH--HhcCCC
Confidence 467788886 444 46777 7888 889999999999888788888888999999999988888776654 578889
Q ss_pred ccEEEccCCCCccccccccccc-cccceEEeecCCCCCCCc
Q 037018 593 LKILHLKSMLWLEEWTMGAGAM-PKLESLIVNPCAYLRKLP 632 (663)
Q Consensus 593 L~~L~L~~~~~l~~l~~~~~~l-~~L~~L~l~~c~~l~~l~ 632 (663)
|+.|+|++|.....+|..+... .++..+++.+|+.+...|
T Consensus 492 L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 492 LRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred CCEEECcCCcccccCChHHhhccccCceEEecCCccccCCC
Confidence 9999999876555777766553 467788888887665443
No 49
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.07 E-value=4.8e-07 Score=97.16 Aligned_cols=242 Identities=24% Similarity=0.255 Sum_probs=157.8
Q ss_pred CCCcccEEEecCCcCcccCccCCCCCCcCeEeccCCCCccchhhhcccccccEeeccCCcccccchhhhcCcCCcEEEcc
Q 037018 370 KFKHLRVLNLGSAILYQYPPGLENLFHLKYLKLNIPSLNCLPSLLCTLLNLQTLEMPASYIDHSPEGIWMMQKLMHLNFG 449 (663)
Q Consensus 370 ~l~~Lr~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~l~ 449 (663)
.+..+..+++..+.+...-..++.+.+|.+|++.+|.|..+...+..+.+|++|++++|.++.+. ++..++.|+.|++.
T Consensus 70 ~l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~ 148 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLS 148 (414)
T ss_pred HhHhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheecccccccccc-chhhccchhhheec
Confidence 45556666677777776555688899999999999999988866888999999999999998886 57788889999999
Q ss_pred CCCCCCCCCCCcCCCCCCcEeeCcCCC-CCChhh-cCCCCCccEEEeecCCCccccchhhhhcCCCCCCEEEEeecCccc
Q 037018 450 SINLPAPPKNYSSSLKNLIFISSLNPS-SCTPDI-LGRLPNVQTLRISGDLSHYHSGVSKSLCELHKLECLQLVHEGRMW 527 (663)
Q Consensus 450 ~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~-l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~ 527 (663)
+|....+. .+..+++|+.+++.++. ..+... +..+.+|+.+.+.++. ... ...+..+..+..+.+.. +.+.
T Consensus 149 -~N~i~~~~-~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~--i~~--i~~~~~~~~l~~~~l~~-n~i~ 221 (414)
T KOG0531|consen 149 -GNLISDIS-GLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNS--IRE--IEGLDLLKKLVLLSLLD-NKIS 221 (414)
T ss_pred -cCcchhcc-CCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCc--hhc--ccchHHHHHHHHhhccc-ccce
Confidence 54444443 35558889999998887 222222 5778889989888873 111 11222333444445554 5555
Q ss_pred cccccccccccCCCC--ceEEEEecccCCCCChhhhcCCCCCcEEEeecCCCCCceeeecCCCCCCcccEEEccCCCCcc
Q 037018 528 QLSRMVLSEYQFPPC--LTQLSLSNTQLMEDPMPALEKLPHLEVLKLKQNSYSERKLACVGSGSFPQLKILHLKSMLWLE 605 (663)
Q Consensus 528 ~lp~~~~~l~~~l~~--L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~ 605 (663)
.+-. +.. +.. |+.++++++.+... ...+..++.+..|++..|.+....- ....+.+..+....+....
T Consensus 222 ~~~~----l~~-~~~~~L~~l~l~~n~i~~~-~~~~~~~~~l~~l~~~~n~~~~~~~----~~~~~~~~~~~~~~~~~~~ 291 (414)
T KOG0531|consen 222 KLEG----LNE-LVMLHLRELYLSGNRISRS-PEGLENLKNLPVLDLSSNRISNLEG----LERLPKLSELWLNDNKLAL 291 (414)
T ss_pred eccC----ccc-chhHHHHHHhcccCccccc-cccccccccccccchhhcccccccc----ccccchHHHhccCcchhcc
Confidence 4432 222 333 78888888876432 2456677788888887766654221 2345555555555543221
Q ss_pred c---ccc-ccccccccceEEeecCCCCC
Q 037018 606 E---WTM-GAGAMPKLESLIVNPCAYLR 629 (663)
Q Consensus 606 ~---l~~-~~~~l~~L~~L~l~~c~~l~ 629 (663)
. ... .....+.+..+.+..++.-.
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (414)
T KOG0531|consen 292 SEAISQEYITSAAPTLVTLTLELNPIRK 319 (414)
T ss_pred hhhhhccccccccccccccccccCcccc
Confidence 1 111 14456677777777766543
No 50
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.99 E-value=2.7e-06 Score=80.92 Aligned_cols=248 Identities=16% Similarity=0.128 Sum_probs=134.8
Q ss_pred cCCCcccEEEecCCcCc-----ccCccCCCCCCcCeEeccCCCCc----cchh-------hhcccccccEeeccCCcc-c
Q 037018 369 KKFKHLRVLNLGSAILY-----QYPPGLENLFHLKYLKLNIPSLN----CLPS-------LLCTLLNLQTLEMPASYI-D 431 (663)
Q Consensus 369 ~~l~~Lr~L~L~~~~l~-----~lp~~~~~l~~L~~L~L~~~~i~----~lp~-------~i~~L~~L~~L~L~~~~l-~ 431 (663)
.-+..+..++|++|.|. .+...+.+-.+|+..+++.-... .+|+ .+-+|++|+..+++.|.+ .
T Consensus 27 ~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~ 106 (388)
T COG5238 27 EMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGS 106 (388)
T ss_pred HhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCc
Confidence 45788888899998876 34455666677888777753111 3332 345677777777777722 2
Q ss_pred ccch----hhhcCcCCcEEEccCCCCCCCCCCC-cCCCCCCcEeeCcCCCCCChhhcCCCCCccEEEeecCC--Cccccc
Q 037018 432 HSPE----GIWMMQKLMHLNFGSINLPAPPKNY-SSSLKNLIFISSLNPSSCTPDILGRLPNVQTLRISGDL--SHYHSG 504 (663)
Q Consensus 432 ~lp~----~l~~l~~L~~L~l~~~~~~~~~~~~-l~~l~~L~~L~l~~~~~~~~~~l~~l~~L~~L~l~~~~--~~~~~~ 504 (663)
..|. .+++-+.|.||.++ ||..+.+... |++ .|.+|- ...-..+-|.|+......|+ +.....
T Consensus 107 ~~~e~L~d~is~~t~l~HL~l~-NnGlGp~aG~rigk--al~~la-------~nKKaa~kp~Le~vicgrNRlengs~~~ 176 (388)
T COG5238 107 EFPEELGDLISSSTDLVHLKLN-NNGLGPIAGGRIGK--ALFHLA-------YNKKAADKPKLEVVICGRNRLENGSKEL 176 (388)
T ss_pred ccchHHHHHHhcCCCceeEEee-cCCCCccchhHHHH--HHHHHH-------HHhhhccCCCceEEEeccchhccCcHHH
Confidence 2332 35566677777777 5433322211 110 011110 01122344667776666653 111222
Q ss_pred hhhhhcCCCCCCEEEEeecCcccc--cccc-ccccccCCCCceEEEEecccCCCCCh----hhhcCCCCCcEEEeecCCC
Q 037018 505 VSKSLCELHKLECLQLVHEGRMWQ--LSRM-VLSEYQFPPCLTQLSLSNTQLMEDPM----PALEKLPHLEVLKLKQNSY 577 (663)
Q Consensus 505 ~~~~l~~l~~L~~L~l~~~~~l~~--lp~~-~~~l~~~l~~L~~L~L~~~~l~~~~~----~~l~~l~~L~~L~L~~~~~ 577 (663)
....+....+|+.+.+.. |.+.. +... +..+.. +.+|+.|+|..|.++.... ..+..++.|+.|.+.+|-+
T Consensus 177 ~a~~l~sh~~lk~vki~q-NgIrpegv~~L~~~gl~y-~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDCll 254 (388)
T COG5238 177 SAALLESHENLKEVKIQQ-NGIRPEGVTMLAFLGLFY-SHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLL 254 (388)
T ss_pred HHHHHHhhcCceeEEeee-cCcCcchhHHHHHHHHHH-hCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhh
Confidence 233444456788888876 44431 0000 002233 6788888888887654332 3445667788888877776
Q ss_pred CCceeeec----CCCCCCcccEEEccCCCCccc------cc-cccccccccceEEeecCCCC
Q 037018 578 SERKLACV----GSGSFPQLKILHLKSMLWLEE------WT-MGAGAMPKLESLIVNPCAYL 628 (663)
Q Consensus 578 ~~~~~~~~----~~~~~~~L~~L~L~~~~~l~~------l~-~~~~~l~~L~~L~l~~c~~l 628 (663)
+....... .-.-+|+|..|.+.++..-.. ++ ...+++|-|..|.+.+|..-
T Consensus 255 s~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~ 316 (388)
T COG5238 255 SNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIK 316 (388)
T ss_pred ccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcch
Confidence 64432211 012467788887777543221 11 23457888888888888653
No 51
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.87 E-value=1.8e-05 Score=54.76 Aligned_cols=39 Identities=31% Similarity=0.397 Sum_probs=20.6
Q ss_pred CcCeEeccCCCCccchhhhcccccccEeeccCCcccccc
Q 037018 396 HLKYLKLNIPSLNCLPSLLCTLLNLQTLEMPASYIDHSP 434 (663)
Q Consensus 396 ~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp 434 (663)
+|++|++++|+|+.+|..+++|++|++|++++|.+..++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 455555555555555555555555555555555554443
No 52
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=97.86 E-value=7.1e-05 Score=80.08 Aligned_cols=119 Identities=12% Similarity=0.091 Sum_probs=73.5
Q ss_pred ccCccCCccccccchhhcHHHHHHHHhcC--CCCceEEEEEec----chhhHHHHHhcCCCccccCCCCccccCCceeec
Q 037018 10 PLTHSSSTSCSSKTVKVKVKAVLVWLFML--DSMWLQFLTAVA----YKTAFVADIYNNNVDLSAMNPKLRVPKRFINKA 83 (663)
Q Consensus 10 ~~~~~~~~~~~~~G~~~~~~~i~~~L~~~--~~~~~~vi~i~G----GKTtla~~v~~~~~~~~~~~~~~~~~~~F~~~~ 83 (663)
+..+...+ ..++||+++++++...|... +. ....+-|+| ||||+++.++++ .........
T Consensus 22 ~l~~~~~P-~~l~~Re~e~~~l~~~l~~~~~~~-~~~~~lI~G~~GtGKT~l~~~v~~~------------l~~~~~~~~ 87 (394)
T PRK00411 22 VLEPDYVP-ENLPHREEQIEELAFALRPALRGS-RPLNVLIYGPPGTGKTTTVKKVFEE------------LEEIAVKVV 87 (394)
T ss_pred hCCCCCcC-CCCCCHHHHHHHHHHHHHHHhCCC-CCCeEEEECCCCCCHHHHHHHHHHH------------HHHhcCCcE
Confidence 33444444 47999999999999998432 11 223344666 999999999994 333332223
Q ss_pred cCCCcceEeCCCcchhHHHHHHHHHHHhCCCC-CcchhhhhHhhHHHHHHHHhhc--CCcEEEEEeCCCC
Q 037018 84 FPVAFPVDVNCACNAQLNHILDDIIKSVMPPS-RVNVIISEDYKLKTIILRDYLT--NKKDFIVLDDVFD 150 (663)
Q Consensus 84 ~~~~~~v~vs~~~~~~~~~l~~~i~~~l~~~~-~~~~~~~~~~~l~~~~l~~~L~--~kr~LlVLDdv~~ 150 (663)
| ..+......+ ...++..|++++.... ...+.. .+++ ...+.+.+. ++.++||||+++.
T Consensus 88 ~---v~in~~~~~~--~~~~~~~i~~~l~~~~~~~~~~~--~~~~-~~~~~~~l~~~~~~~viviDE~d~ 149 (394)
T PRK00411 88 Y---VYINCQIDRT--RYAIFSEIARQLFGHPPPSSGLS--FDEL-FDKIAEYLDERDRVLIVALDDINY 149 (394)
T ss_pred E---EEEECCcCCC--HHHHHHHHHHHhcCCCCCCCCCC--HHHH-HHHHHHHHHhcCCEEEEEECCHhH
Confidence 3 0043344445 7889999999997622 111111 2344 455566664 4568999999987
No 53
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.85 E-value=3.7e-05 Score=75.51 Aligned_cols=85 Identities=15% Similarity=0.004 Sum_probs=57.1
Q ss_pred EEEEEec----chhhHHHHHhcCCCccccCCCCccccCCceeeccCCCcceEeCCC--cchhHHHHHHHH-----HHHhC
Q 037018 44 QFLTAVA----YKTAFVADIYNNNVDLSAMNPKLRVPKRFINKAFPVAFPVDVNCA--CNAQLNHILDDI-----IKSVM 112 (663)
Q Consensus 44 ~vi~i~G----GKTtla~~v~~~~~~~~~~~~~~~~~~~F~~~~~~~~~~v~vs~~--~~~~~~~l~~~i-----~~~l~ 112 (663)
..++|+| |||||++++|++. ... +|+..+| +.++.. ++ +.++++++ +.+..
T Consensus 17 qr~~I~G~~G~GKTTLlr~I~n~l----------~~~-~fdv~~~-----v~vI~er~~e--v~el~~~I~~~~v~~~~~ 78 (249)
T cd01128 17 QRGLIVAPPKAGKTTLLQSIANAI----------TKN-HPEVYLI-----VLLIDERPEE--VTDMQRSVKGEVIASTFD 78 (249)
T ss_pred CEEEEECCCCCCHHHHHHHHHhcc----------ccc-cCCeEEE-----EEEccCCCcc--HHHHHHHhccEEEEecCC
Confidence 3455555 9999999999966 444 8999999 998887 67 99999999 44333
Q ss_pred CCCCcchhhhh-HhhHHHHHHHHh-hcCCcEEEEEeCCCC
Q 037018 113 PPSRVNVIISE-DYKLKTIILRDY-LTNKKDFIVLDDVFD 150 (663)
Q Consensus 113 ~~~~~~~~~~~-~~~l~~~~l~~~-L~~kr~LlVLDdv~~ 150 (663)
.+. ..... .... ....... -.++++++++|++..
T Consensus 79 ~~~---~~~~~~~~~~-~~~a~~~~~~G~~vll~iDei~r 114 (249)
T cd01128 79 EPP---ERHVQVAEMV-LEKAKRLVEHGKDVVILLDSITR 114 (249)
T ss_pred CCH---HHHHHHHHHH-HHHHHHHHHCCCCEEEEEECHHH
Confidence 311 11111 2222 2333222 348999999999976
No 54
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.81 E-value=2.1e-05 Score=54.39 Aligned_cols=40 Identities=30% Similarity=0.461 Sum_probs=35.0
Q ss_pred CcccEEEecCCcCcccCccCCCCCCcCeEeccCCCCccch
Q 037018 372 KHLRVLNLGSAILYQYPPGLENLFHLKYLKLNIPSLNCLP 411 (663)
Q Consensus 372 ~~Lr~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp 411 (663)
++|++|++++|.++.+|..+++|++|++|++++|.|+.++
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 5799999999999999888999999999999999998776
No 55
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.79 E-value=7.7e-05 Score=77.39 Aligned_cols=156 Identities=15% Similarity=0.156 Sum_probs=80.4
Q ss_pred CCCCCcEeeCcCCC-CCChhhcCCC-CCccEEEeecCCCccccchhhhhcCCCCCCEEEEeecCccccccccccccccCC
Q 037018 463 SLKNLIFISSLNPS-SCTPDILGRL-PNVQTLRISGDLSHYHSGVSKSLCELHKLECLQLVHEGRMWQLSRMVLSEYQFP 540 (663)
Q Consensus 463 ~l~~L~~L~l~~~~-~~~~~~l~~l-~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~lp~~~~~l~~~l 540 (663)
.+.++..|++.+|. ..+| .+ ++|+.|.+.+| .....+|..+ .++|++|.+++|..+..+|.
T Consensus 50 ~~~~l~~L~Is~c~L~sLP----~LP~sLtsL~Lsnc--~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~--------- 112 (426)
T PRK15386 50 EARASGRLYIKDCDIESLP----VLPNELTEITIENC--NNLTTLPGSI--PEGLEKLTVCHCPEISGLPE--------- 112 (426)
T ss_pred HhcCCCEEEeCCCCCcccC----CCCCCCcEEEccCC--CCcccCCchh--hhhhhheEccCccccccccc---------
Confidence 45667777777765 4444 23 35777777776 2334445443 24677777776555555543
Q ss_pred CCceEEEEecccCCCCChhhhcCC-CCCcEEEeecCCCCCceeeecCCCCC-CcccEEEccCCCCccccccccccccccc
Q 037018 541 PCLTQLSLSNTQLMEDPMPALEKL-PHLEVLKLKQNSYSERKLACVGSGSF-PQLKILHLKSMLWLEEWTMGAGAMPKLE 618 (663)
Q Consensus 541 ~~L~~L~L~~~~l~~~~~~~l~~l-~~L~~L~L~~~~~~~~~~~~~~~~~~-~~L~~L~L~~~~~l~~l~~~~~~l~~L~ 618 (663)
+|+.|++.++... .+..+ ++|+.|.+.+++.... ... ...+ ++|+.|.+++|..+. +|..+. ++|+
T Consensus 113 -sLe~L~L~~n~~~-----~L~~LPssLk~L~I~~~n~~~~--~~l-p~~LPsSLk~L~Is~c~~i~-LP~~LP--~SLk 180 (426)
T PRK15386 113 -SVRSLEIKGSATD-----SIKNVPNGLTSLSINSYNPENQ--ARI-DNLISPSLKTLSLTGCSNII-LPEKLP--ESLQ 180 (426)
T ss_pred -ccceEEeCCCCCc-----ccccCcchHhheeccccccccc--ccc-ccccCCcccEEEecCCCccc-Cccccc--ccCc
Confidence 4666666544321 12233 3566666643321110 000 1123 478888888876442 332222 4788
Q ss_pred eEEeecCCCCC-CCc-cccCCCCCCCEEEecCCC
Q 037018 619 SLIVNPCAYLR-KLP-EELWCIKSLCKLELHWPQ 650 (663)
Q Consensus 619 ~L~l~~c~~l~-~l~-~~l~~l~sL~~L~l~~c~ 650 (663)
.|+++.|.... .++ ..+. +++ .|++.+|-
T Consensus 181 ~L~ls~n~~~sLeI~~~sLP--~nl-~L~f~n~l 211 (426)
T PRK15386 181 SITLHIEQKTTWNISFEGFP--DGL-DIDLQNSV 211 (426)
T ss_pred EEEecccccccccCcccccc--ccc-Eechhhhc
Confidence 88887653111 111 1111 344 67777764
No 56
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.76 E-value=7.1e-06 Score=92.15 Aligned_cols=104 Identities=18% Similarity=0.153 Sum_probs=69.0
Q ss_pred CCcccEEEeecCccccccccch-hHHhcCCCcccEEEecCCcCc--ccCccCCCCCCcCeEeccCCCCccchhhhccccc
Q 037018 343 DMYLQSFLNHTLESDRLALIDC-ENFCKKFKHLRVLNLGSAILY--QYPPGLENLFHLKYLKLNIPSLNCLPSLLCTLLN 419 (663)
Q Consensus 343 ~~~lr~L~l~~~~~~~~~~~~l-~~~~~~l~~Lr~L~L~~~~l~--~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~ 419 (663)
..+|++|.+.+.... .... ..+-..+|.|+.|.+.+-.+. ++.....++++|+.||+++++++.+ ..+++|++
T Consensus 121 r~nL~~LdI~G~~~~---s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~Lkn 196 (699)
T KOG3665|consen 121 RQNLQHLDISGSELF---SNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKN 196 (699)
T ss_pred HHhhhhcCccccchh---hccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhcccc
Confidence 567777777775432 1122 444466788888888877654 3334455677888888888888777 57778888
Q ss_pred ccEeeccCCcccccc--hhhhcCcCCcEEEccC
Q 037018 420 LQTLEMPASYIDHSP--EGIWMMQKLMHLNFGS 450 (663)
Q Consensus 420 L~~L~L~~~~l~~lp--~~l~~l~~L~~L~l~~ 450 (663)
|++|.+++-.+..-+ ..+.+|++|++||+++
T Consensus 197 Lq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~ 229 (699)
T KOG3665|consen 197 LQVLSMRNLEFESYQDLIDLFNLKKLRVLDISR 229 (699)
T ss_pred HHHHhccCCCCCchhhHHHHhcccCCCeeeccc
Confidence 888877665444322 2466788888888873
No 57
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.74 E-value=0.00011 Score=76.29 Aligned_cols=134 Identities=17% Similarity=0.156 Sum_probs=84.8
Q ss_pred hHHhcCCCcccEEEecCCcCcccCccCCCCCCcCeEeccCC-CCccchhhhcccccccEeeccCC-cccccchhhhcCcC
Q 037018 365 ENFCKKFKHLRVLNLGSAILYQYPPGLENLFHLKYLKLNIP-SLNCLPSLLCTLLNLQTLEMPAS-YIDHSPEGIWMMQK 442 (663)
Q Consensus 365 ~~~~~~l~~Lr~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~-~i~~lp~~i~~L~~L~~L~L~~~-~l~~lp~~l~~l~~ 442 (663)
..+ ..+++++.|++++|.++.+|. + ..+|+.|.+++| .++.+|..+ ..+|+.|++++| .+..+|. +
T Consensus 46 ~r~-~~~~~l~~L~Is~c~L~sLP~-L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~------s 113 (426)
T PRK15386 46 PQI-EEARASGRLYIKDCDIESLPV-L--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE------S 113 (426)
T ss_pred HHH-HHhcCCCEEEeCCCCCcccCC-C--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc------c
Confidence 444 668999999999998888872 2 237999999885 677788655 358999999999 7777774 4
Q ss_pred CcEEEccCCCC---CCCCCCCcCCCCCCcEeeCcCCCCCChhhcC-CC-CCccEEEeecCCCccccchhhhhcCCCCCCE
Q 037018 443 LMHLNFGSINL---PAPPKNYSSSLKNLIFISSLNPSSCTPDILG-RL-PNVQTLRISGDLSHYHSGVSKSLCELHKLEC 517 (663)
Q Consensus 443 L~~L~l~~~~~---~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~-~l-~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~ 517 (663)
|+.|++. ++. ...+|. +|+.|.+.++.......+. .+ ++|+.|.+.+|. . ..+|..+. .+|+.
T Consensus 114 Le~L~L~-~n~~~~L~~LPs------sLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~--~-i~LP~~LP--~SLk~ 181 (426)
T PRK15386 114 VRSLEIK-GSATDSIKNVPN------GLTSLSINSYNPENQARIDNLISPSLKTLSLTGCS--N-IILPEKLP--ESLQS 181 (426)
T ss_pred cceEEeC-CCCCcccccCcc------hHhheeccccccccccccccccCCcccEEEecCCC--c-ccCccccc--ccCcE
Confidence 6777776 322 233443 4556665432211111111 12 578888888873 2 12333332 57888
Q ss_pred EEEee
Q 037018 518 LQLVH 522 (663)
Q Consensus 518 L~l~~ 522 (663)
|.++.
T Consensus 182 L~ls~ 186 (426)
T PRK15386 182 ITLHI 186 (426)
T ss_pred EEecc
Confidence 88764
No 58
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.72 E-value=5.9e-07 Score=96.14 Aligned_cols=177 Identities=20% Similarity=0.198 Sum_probs=118.7
Q ss_pred CCCcCCCCCCcEeeCcCCC-CCChhhcCCC-CCccEEEeecCCCccccchhhhhc----------CCCCCCEEEEeecCc
Q 037018 458 KNYSSSLKNLIFISSLNPS-SCTPDILGRL-PNVQTLRISGDLSHYHSGVSKSLC----------ELHKLECLQLVHEGR 525 (663)
Q Consensus 458 ~~~l~~l~~L~~L~l~~~~-~~~~~~l~~l-~~L~~L~l~~~~~~~~~~~~~~l~----------~l~~L~~L~l~~~~~ 525 (663)
|-.|-...+|+.|.+.+|. +. ...+..+ .+|++|-..+. ..++...+. .+..|...+.+ ||.
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~-~~GL~~lr~qLe~LIC~~S----l~Al~~v~ascggd~~ns~~Wn~L~~a~fs-yN~ 175 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLST-AKGLQELRHQLEKLICHNS----LDALRHVFASCGGDISNSPVWNKLATASFS-YNR 175 (1096)
T ss_pred CceeccccceeeEEecCcchhh-hhhhHHHHHhhhhhhhhcc----HHHHHHHHHHhccccccchhhhhHhhhhcc-hhh
Confidence 6667788899999999988 33 2222111 23444432221 111111111 12356667777 488
Q ss_pred cccccccccccccCCCCceEEEEecccCCCCChhhhcCCCCCcEEEeecCCCCCceeeecCCCCCCcccEEEccCCCCcc
Q 037018 526 MWQLSRMVLSEYQFPPCLTQLSLSNTQLMEDPMPALEKLPHLEVLKLKQNSYSERKLACVGSGSFPQLKILHLKSMLWLE 605 (663)
Q Consensus 526 l~~lp~~~~~l~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~ 605 (663)
+..+.. .+.- ++.|+.|+|++|++.. ...+..|+.|++|+|++|.+.... .+. ..++. |..|.|++ +.++
T Consensus 176 L~~mD~---SLql-l~ale~LnLshNk~~~--v~~Lr~l~~LkhLDlsyN~L~~vp-~l~-~~gc~-L~~L~lrn-N~l~ 245 (1096)
T KOG1859|consen 176 LVLMDE---SLQL-LPALESLNLSHNKFTK--VDNLRRLPKLKHLDLSYNCLRHVP-QLS-MVGCK-LQLLNLRN-NALT 245 (1096)
T ss_pred HHhHHH---HHHH-HHHhhhhccchhhhhh--hHHHHhcccccccccccchhcccc-ccc-hhhhh-heeeeecc-cHHH
Confidence 877666 6666 8999999999999754 348899999999999999986533 222 23444 99999998 4677
Q ss_pred ccccccccccccceEEeecCCCCCC-CccccCCCCCCCEEEecCCCH
Q 037018 606 EWTMGAGAMPKLESLIVNPCAYLRK-LPEELWCIKSLCKLELHWPQP 651 (663)
Q Consensus 606 ~l~~~~~~l~~L~~L~l~~c~~l~~-l~~~l~~l~sL~~L~l~~c~~ 651 (663)
++- ++.++.+|+.||+++|-...- -..-+..+.+|+.|++.|+|-
T Consensus 246 tL~-gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 246 TLR-GIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred hhh-hHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 664 477899999999999865431 112345678999999999873
No 59
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.71 E-value=8e-07 Score=95.16 Aligned_cols=124 Identities=25% Similarity=0.213 Sum_probs=77.2
Q ss_pred CcEeeCcCCC-CCChhhcCCCCCccEEEeecCCCccccchhhhhcCCCCCCEEEEeecCccccccccccccccCCCCceE
Q 037018 467 LIFISSLNPS-SCTPDILGRLPNVQTLRISGDLSHYHSGVSKSLCELHKLECLQLVHEGRMWQLSRMVLSEYQFPPCLTQ 545 (663)
Q Consensus 467 L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~lp~~~~~l~~~l~~L~~ 545 (663)
|...+.+.|. ..+...+.-++.|+.|++++|. .. .. ..+..+++|++|+|+. |.+..+|. ++..--.|..
T Consensus 166 L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk--~~-~v-~~Lr~l~~LkhLDlsy-N~L~~vp~----l~~~gc~L~~ 236 (1096)
T KOG1859|consen 166 LATASFSYNRLVLMDESLQLLPALESLNLSHNK--FT-KV-DNLRRLPKLKHLDLSY-NCLRHVPQ----LSMVGCKLQL 236 (1096)
T ss_pred HhhhhcchhhHHhHHHHHHHHHHhhhhccchhh--hh-hh-HHHHhccccccccccc-chhccccc----cchhhhhhee
Confidence 3444444444 4455566677778888888772 22 22 2566778888888886 77777775 2221123888
Q ss_pred EEEecccCCCCChhhhcCCCCCcEEEeecCCCCCceeeecCCCCCCcccEEEccCCC
Q 037018 546 LSLSNTQLMEDPMPALEKLPHLEVLKLKQNSYSERKLACVGSGSFPQLKILHLKSML 602 (663)
Q Consensus 546 L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~ 602 (663)
|.+++|.++ .+..+.++.+|+.|++++|.+.+..--.. +..+..|+.|.|.+|+
T Consensus 237 L~lrnN~l~--tL~gie~LksL~~LDlsyNll~~hseL~p-LwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 237 LNLRNNALT--TLRGIENLKSLYGLDLSYNLLSEHSELEP-LWSLSSLIVLWLEGNP 290 (1096)
T ss_pred eeecccHHH--hhhhHHhhhhhhccchhHhhhhcchhhhH-HHHHHHHHHHhhcCCc
Confidence 888887653 34456677788888888777665432222 4456677777777764
No 60
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=97.71 E-value=0.00065 Score=68.45 Aligned_cols=96 Identities=16% Similarity=0.194 Sum_probs=58.0
Q ss_pred EEEEEec----chhhHHHHHhcCCCccccCCCCccccCCceeeccCCCcceEeCCCcchhHHHHHHHHHHHhCCCCCcch
Q 037018 44 QFLTAVA----YKTAFVADIYNNNVDLSAMNPKLRVPKRFINKAFPVAFPVDVNCACNAQLNHILDDIIKSVMPPSRVNV 119 (663)
Q Consensus 44 ~vi~i~G----GKTtla~~v~~~~~~~~~~~~~~~~~~~F~~~~~~~~~~v~vs~~~~~~~~~l~~~i~~~l~~~~~~~~ 119 (663)
+++.|+| ||||+++.+++.. .. ..+ ..+| + +....+ ..++++.|...++.+.....
T Consensus 44 ~~~~l~G~~G~GKTtl~~~l~~~l----------~~-~~~-~~~~-----~-~~~~~~--~~~~l~~i~~~lG~~~~~~~ 103 (269)
T TIGR03015 44 GFILITGEVGAGKTTLIRNLLKRL----------DQ-ERV-VAAK-----L-VNTRVD--AEDLLRMVAADFGLETEGRD 103 (269)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHhc----------CC-CCe-EEee-----e-eCCCCC--HHHHHHHHHHHcCCCCCCCC
Confidence 4556666 9999999999954 21 111 1223 2 233456 77889999988876532111
Q ss_pred hhhhHhhHHHHHHHHhh-cCCcEEEEEeCCCC-ChhhHHHHHh
Q 037018 120 IISEDYKLKTIILRDYL-TNKKDFIVLDDVFD-DREIWNDLEK 160 (663)
Q Consensus 120 ~~~~~~~l~~~~l~~~L-~~kr~LlVLDdv~~-~~~~~~~l~~ 160 (663)
.......+ ...+.... .++++++|+||++. +...++.+..
T Consensus 104 ~~~~~~~l-~~~l~~~~~~~~~~vliiDe~~~l~~~~~~~l~~ 145 (269)
T TIGR03015 104 KAALLREL-EDFLIEQFAAGKRALLVVDEAQNLTPELLEELRM 145 (269)
T ss_pred HHHHHHHH-HHHHHHHHhCCCCeEEEEECcccCCHHHHHHHHH
Confidence 01113344 33343333 67889999999998 4556776654
No 61
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=97.69 E-value=0.00015 Score=76.78 Aligned_cols=116 Identities=11% Similarity=0.009 Sum_probs=70.4
Q ss_pred CccCCccccccchhhcHHHHHHHHhc---CC-CCceEEEEEec-chhhHHHHHhcCCCccccCCCCccccCCce------
Q 037018 12 THSSSTSCSSKTVKVKVKAVLVWLFM---LD-SMWLQFLTAVA-YKTAFVADIYNNNVDLSAMNPKLRVPKRFI------ 80 (663)
Q Consensus 12 ~~~~~~~~~~~G~~~~~~~i~~~L~~---~~-~~~~~vi~i~G-GKTtla~~v~~~~~~~~~~~~~~~~~~~F~------ 80 (663)
.+...++ .++||+.+.++|...|.. .. ...+-+.|-.| ||||++++++++. ....+
T Consensus 9 ~~~~~p~-~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l------------~~~~~~~~~~~ 75 (365)
T TIGR02928 9 EPDYVPD-RIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKEL------------EEAAEDRDVRV 75 (365)
T ss_pred CCCCCCC-CCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHH------------HHHhhccCCce
Confidence 4444444 799999999999999864 11 12333344444 9999999999832 21111
Q ss_pred eeccCCCcceEeCCCcchhHHHHHHHHHHHhC---CCCCcchhhhhHhhHHHHHHHHhhc--CCcEEEEEeCCCC
Q 037018 81 NKAFPVAFPVDVNCACNAQLNHILDDIIKSVM---PPSRVNVIISEDYKLKTIILRDYLT--NKKDFIVLDDVFD 150 (663)
Q Consensus 81 ~~~~~~~~~v~vs~~~~~~~~~l~~~i~~~l~---~~~~~~~~~~~~~~l~~~~l~~~L~--~kr~LlVLDdv~~ 150 (663)
..+| +......+ ...++..|+.++. .+....+.. ..++ ...+.+.+. +++++||||+++.
T Consensus 76 ~~v~-----in~~~~~~--~~~~~~~i~~~l~~~~~~~~~~~~~--~~~~-~~~l~~~l~~~~~~~vlvIDE~d~ 140 (365)
T TIGR02928 76 VTVY-----VNCQILDT--LYQVLVELANQLRGSGEEVPTTGLS--TSEV-FRRLYKELNERGDSLIIVLDEIDY 140 (365)
T ss_pred EEEE-----EECCCCCC--HHHHHHHHHHHHhhcCCCCCCCCCC--HHHH-HHHHHHHHHhcCCeEEEEECchhh
Confidence 2234 44444445 7788899999884 221111111 2333 344555553 5688999999987
No 62
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.66 E-value=4.4e-05 Score=72.91 Aligned_cols=234 Identities=18% Similarity=0.143 Sum_probs=132.9
Q ss_pred CCcccEEEeecCccccccccchhHHhcCCCcccEEEecCCcCc----ccC-------ccCCCCCCcCeEeccCCCCc-cc
Q 037018 343 DMYLQSFLNHTLESDRLALIDCENFCKKFKHLRVLNLGSAILY----QYP-------PGLENLFHLKYLKLNIPSLN-CL 410 (663)
Q Consensus 343 ~~~lr~L~l~~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~l~----~lp-------~~~~~l~~L~~L~L~~~~i~-~l 410 (663)
...+.-+.++++....-....+...+.+-++|++.+++..-.. .++ +.+-+|++|+..+|+.|.+. ..
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~ 108 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF 108 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence 7788899999998764333334333478899999999875422 333 45568999999999999877 44
Q ss_pred hh----hhcccccccEeeccCCcccccchh-h-------------hcCcCCcEEEccCCCCCCCCCCCcCCCCCCcEeeC
Q 037018 411 PS----LLCTLLNLQTLEMPASYIDHSPEG-I-------------WMMQKLMHLNFGSINLPAPPKNYSSSLKNLIFISS 472 (663)
Q Consensus 411 p~----~i~~L~~L~~L~L~~~~l~~lp~~-l-------------~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 472 (663)
|+ -|+.-..|.+|.+++|.++.+..+ + .+-|.|+.....+|.+ ...+.
T Consensus 109 ~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRl-engs~------------- 174 (388)
T COG5238 109 PEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRL-ENGSK------------- 174 (388)
T ss_pred chHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchh-ccCcH-------------
Confidence 43 456778999999999977654322 2 2334555555442221 11110
Q ss_pred cCCCCCChhhcCCCCCccEEEeecCCCccccc-----hhhhhcCCCCCCEEEEeecCcccc-----ccccccccccCCCC
Q 037018 473 LNPSSCTPDILGRLPNVQTLRISGDLSHYHSG-----VSKSLCELHKLECLQLVHEGRMWQ-----LSRMVLSEYQFPPC 542 (663)
Q Consensus 473 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-----~~~~l~~l~~L~~L~l~~~~~l~~-----lp~~~~~l~~~l~~ 542 (663)
......+..-.+|+.+.+..|. .... ....+..+++|+.|++.. |.++. +.. .+.. .+.
T Consensus 175 ----~~~a~~l~sh~~lk~vki~qNg--Irpegv~~L~~~gl~y~~~LevLDlqD-Ntft~~gS~~La~---al~~-W~~ 243 (388)
T COG5238 175 ----ELSAALLESHENLKEVKIQQNG--IRPEGVTMLAFLGLFYSHSLEVLDLQD-NTFTLEGSRYLAD---ALCE-WNL 243 (388)
T ss_pred ----HHHHHHHHhhcCceeEEeeecC--cCcchhHHHHHHHHHHhCcceeeeccc-cchhhhhHHHHHH---Hhcc-cch
Confidence 0011112222455666665553 1111 122344556677777765 44431 111 2233 556
Q ss_pred ceEEEEecccCCCCChhhh------cCCCCCcEEEeecCCCCCceeeec-----CCCCCCcccEEEccCC
Q 037018 543 LTQLSLSNTQLMEDPMPAL------EKLPHLEVLKLKQNSYSERKLACV-----GSGSFPQLKILHLKSM 601 (663)
Q Consensus 543 L~~L~L~~~~l~~~~~~~l------~~l~~L~~L~L~~~~~~~~~~~~~-----~~~~~~~L~~L~L~~~ 601 (663)
|+.|.+..|-++......+ ...|+|..|.+.+|...+...... ..+..|-|..|.+.+|
T Consensus 244 lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngN 313 (388)
T COG5238 244 LRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGN 313 (388)
T ss_pred hhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccC
Confidence 7777777776554433322 135777777777776544332111 0356677777777764
No 63
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.64 E-value=6e-05 Score=77.36 Aligned_cols=90 Identities=14% Similarity=0.024 Sum_probs=58.3
Q ss_pred EEEEEec----chhhHHHHHhcCCCccccCCCCccccCCceeeccCCCcceEeCCCcchhHHHHHHHHHHHhCCCC--Cc
Q 037018 44 QFLTAVA----YKTAFVADIYNNNVDLSAMNPKLRVPKRFINKAFPVAFPVDVNCACNAQLNHILDDIIKSVMPPS--RV 117 (663)
Q Consensus 44 ~vi~i~G----GKTtla~~v~~~~~~~~~~~~~~~~~~~F~~~~~~~~~~v~vs~~~~~~~~~l~~~i~~~l~~~~--~~ 117 (663)
+..+|+| ||||||++||++. ... +|+..+| |.++..+.+.+.+++++|...+-... ..
T Consensus 170 QR~lIvgppGvGKTTLaK~Ian~I----------~~n-hFDv~~~-----VvLIgER~~EVtdiqrsIlg~vv~st~d~~ 233 (416)
T PRK09376 170 QRGLIVAPPKAGKTVLLQNIANSI----------TTN-HPEVHLI-----VLLIDERPEEVTDMQRSVKGEVVASTFDEP 233 (416)
T ss_pred ceEEEeCCCCCChhHHHHHHHHHH----------Hhh-cCCeEEE-----EEEeCCchhHHHHHHHHhcCcEEEECCCCC
Confidence 3456666 9999999999965 333 8999999 99999984348999999974332221 11
Q ss_pred chhhhh-HhhHHHHHHHHh-hcCCcEEEEEeCCCC
Q 037018 118 NVIISE-DYKLKTIILRDY-LTNKKDFIVLDDVFD 150 (663)
Q Consensus 118 ~~~~~~-~~~l~~~~l~~~-L~~kr~LlVLDdv~~ 150 (663)
+..... .... ...-+.. -.+++++|++|++..
T Consensus 234 ~~~~~~~a~~~-ie~Ae~~~e~G~dVlL~iDsItR 267 (416)
T PRK09376 234 AERHVQVAEMV-IEKAKRLVEHGKDVVILLDSITR 267 (416)
T ss_pred HHHHHHHHHHH-HHHHHHHHHcCCCEEEEEEChHH
Confidence 111111 1111 2222222 367999999999976
No 64
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.61 E-value=3.7e-05 Score=86.44 Aligned_cols=129 Identities=16% Similarity=0.214 Sum_probs=93.6
Q ss_pred CceeEEEEEeccc--ccccccccC-CCcccEEEeecCccccccccchhHHhcCCCcccEEEecCCcCcccCccCCCCCCc
Q 037018 321 ANVKRCFILEDLI--DEFISLEHS-DMYLQSFLNHTLESDRLALIDCENFCKKFKHLRVLNLGSAILYQYPPGLENLFHL 397 (663)
Q Consensus 321 ~~~r~lsi~~~~~--~~~~~~~~~-~~~lr~L~l~~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~l~~lp~~~~~l~~L 397 (663)
.+++++.+.+... ..|+.--.. +|.|++|.+.+.... ..++..++.++|+|+.||++++.++.+ ..++++++|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~---~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknL 197 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFD---NDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNL 197 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceec---chhHHHHhhccCccceeecCCCCccCc-HHHhccccH
Confidence 4566666665431 223211112 999999999998775 334666779999999999999999877 678999999
Q ss_pred CeEeccCCCCccch--hhhcccccccEeeccCCcccccchh-------hhcCcCCcEEEccCCCC
Q 037018 398 KYLKLNIPSLNCLP--SLLCTLLNLQTLEMPASYIDHSPEG-------IWMMQKLMHLNFGSINL 453 (663)
Q Consensus 398 ~~L~L~~~~i~~lp--~~i~~L~~L~~L~L~~~~l~~lp~~-------l~~l~~L~~L~l~~~~~ 453 (663)
+.|.+.+-.+.... ..+.+|++|++||+|.......+.. -..+|+||.|+.+++..
T Consensus 198 q~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi 262 (699)
T KOG3665|consen 198 QVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDI 262 (699)
T ss_pred HHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcch
Confidence 99999997777432 4677899999999999843332211 12488999999985444
No 65
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.59 E-value=7.7e-06 Score=89.98 Aligned_cols=36 Identities=17% Similarity=0.068 Sum_probs=17.7
Q ss_pred cCCCcccEEEecCCc-Ccc--cCccCCCCCCcCeEeccC
Q 037018 369 KKFKHLRVLNLGSAI-LYQ--YPPGLENLFHLKYLKLNI 404 (663)
Q Consensus 369 ~~l~~Lr~L~L~~~~-l~~--lp~~~~~l~~L~~L~L~~ 404 (663)
..+++|+.|.+.++. +.. +-.....+++|+.|++++
T Consensus 185 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 223 (482)
T KOG1947|consen 185 SSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSG 223 (482)
T ss_pred hhCchhhHhhhcccccCChhhHHHHHhhCchhheecccC
Confidence 445666666655554 322 222334455555555554
No 66
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.55 E-value=0.00045 Score=62.07 Aligned_cols=42 Identities=17% Similarity=0.003 Sum_probs=30.2
Q ss_pred cchhhcHHHHHHHHhcCCCCceEEEEEec-chhhHHHHHhcCC
Q 037018 22 KTVKVKVKAVLVWLFMLDSMWLQFLTAVA-YKTAFVADIYNNN 63 (663)
Q Consensus 22 ~G~~~~~~~i~~~L~~~~~~~~~vi~i~G-GKTtla~~v~~~~ 63 (663)
.|++..+.++...+.......+-++|-.| ||||+|+++++..
T Consensus 1 ~~~~~~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 1 VGQEEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred CchHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 47888899999988775442333333344 9999999999943
No 67
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.48 E-value=0.005 Score=73.60 Aligned_cols=130 Identities=12% Similarity=0.072 Sum_probs=75.2
Q ss_pred cccchhhcHHHHHHHHhcCCCCceEEEEEec----chhhHHHHHhcCCCccccCCCCccccCCceeeccCCCcceEeCCC
Q 037018 20 SSKTVKVKVKAVLVWLFMLDSMWLQFLTAVA----YKTAFVADIYNNNVDLSAMNPKLRVPKRFINKAFPVAFPVDVNCA 95 (663)
Q Consensus 20 ~~~G~~~~~~~i~~~L~~~~~~~~~vi~i~G----GKTtla~~v~~~~~~~~~~~~~~~~~~~F~~~~~~~~~~v~vs~~ 95 (663)
.++-|+ ++...|.... ..+++-|.| ||||++....+ +. +..+| +++...
T Consensus 15 ~~~~R~----rl~~~l~~~~--~~~~~~v~apaG~GKTtl~~~~~~------------~~----~~~~w-----~~l~~~ 67 (903)
T PRK04841 15 NTVVRE----RLLAKLSGAN--NYRLVLVTSPAGYGKTTLISQWAA------------GK----NNLGW-----YSLDES 67 (903)
T ss_pred ccCcch----HHHHHHhccc--CCCeEEEECCCCCCHHHHHHHHHH------------hC----CCeEE-----EecCcc
Confidence 455544 5555555433 467777777 99999999876 32 26889 888643
Q ss_pred -cchhHHHHHHHHHHHhCCCCCc--chhh----h---h-HhhHHHHHHHHhhc--CCcEEEEEeCCCC-Chhh-HHHHHh
Q 037018 96 -CNAQLNHILDDIIKSVMPPSRV--NVII----S---E-DYKLKTIILRDYLT--NKKDFIVLDDVFD-DREI-WNDLEK 160 (663)
Q Consensus 96 -~~~~~~~l~~~i~~~l~~~~~~--~~~~----~---~-~~~l~~~~l~~~L~--~kr~LlVLDdv~~-~~~~-~~~l~~ 160 (663)
-+ ...+...++..+...... +... . . ...+ ...+...+. +.+++|||||+.. +... .+.+..
T Consensus 68 d~~--~~~f~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~ 144 (903)
T PRK04841 68 DNQ--PERFASYLIAALQQATNGHCSKSEALAQKRQYASLSSL-FAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRF 144 (903)
T ss_pred cCC--HHHHHHHHHHHHHHhcCcccchhhhhhccCCcCCHHHH-HHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHH
Confidence 34 566767777766421110 0000 0 0 1122 223333333 6889999999987 3233 334444
Q ss_pred hCCCCCCCceEEEEEeCCC
Q 037018 161 FLPDNQNGSRVLILVTDPF 179 (663)
Q Consensus 161 ~~~~~~~gskIiiT~r~~~ 179 (663)
.+.....+-++|||+|...
T Consensus 145 l~~~~~~~~~lv~~sR~~~ 163 (903)
T PRK04841 145 FLRHQPENLTLVVLSRNLP 163 (903)
T ss_pred HHHhCCCCeEEEEEeCCCC
Confidence 4444456778889999743
No 68
>PF05729 NACHT: NACHT domain
Probab=97.46 E-value=0.00045 Score=63.73 Aligned_cols=111 Identities=14% Similarity=0.219 Sum_probs=58.3
Q ss_pred EEEEEec----chhhHHHHHhcCCCccccCCCCccccCC----ceeeccCCCcceEeCCCcchh-HHHHHHHHHHHhCCC
Q 037018 44 QFLTAVA----YKTAFVADIYNNNVDLSAMNPKLRVPKR----FINKAFPVAFPVDVNCACNAQ-LNHILDDIIKSVMPP 114 (663)
Q Consensus 44 ~vi~i~G----GKTtla~~v~~~~~~~~~~~~~~~~~~~----F~~~~~~~~~~v~vs~~~~~~-~~~l~~~i~~~l~~~ 114 (663)
|++-|.| ||||++++++.+. .-... +...+| +......... ...+.+.|..+....
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~----------~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~l~~~l~~~~~~~ 65 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQL----------AEEEPPPSKFPYPFF-----FSLRDISDSNNSRSLADLLFDQLPES 65 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHH----------HhcCcccccceEEEE-----EeehhhhhccccchHHHHHHHhhccc
Confidence 3556666 9999999999843 11111 344445 5444433300 113444444444332
Q ss_pred CCcchhhhhHhhHHHHHHHHh-hcCCcEEEEEeCCCC--C-hh-----hHHHHH-hhCCC-CCCCceEEEEEeCCC
Q 037018 115 SRVNVIISEDYKLKTIILRDY-LTNKKDFIVLDDVFD--D-RE-----IWNDLE-KFLPD-NQNGSRVLILVTDPF 179 (663)
Q Consensus 115 ~~~~~~~~~~~~l~~~~l~~~-L~~kr~LlVLDdv~~--~-~~-----~~~~l~-~~~~~-~~~gskIiiT~r~~~ 179 (663)
.. . . ...+... -..+++++|+|++.. . .. .+..+. .-++. ..++.+|+||+|...
T Consensus 66 ~~-----~----~-~~~~~~~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~ 131 (166)
T PF05729_consen 66 IA-----P----I-EELLQELLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRA 131 (166)
T ss_pred hh-----h----h-HHHHHHHHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCCh
Confidence 11 1 1 1111111 257999999999987 1 11 133333 22332 356999999999654
No 69
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.44 E-value=0.00023 Score=67.16 Aligned_cols=43 Identities=12% Similarity=-0.055 Sum_probs=29.0
Q ss_pred ccchhhcHHHHHHHHhcCCCCceEEEEEec----chhhHHHHHhcCC
Q 037018 21 SKTVKVKVKAVLVWLFMLDSMWLQFLTAVA----YKTAFVADIYNNN 63 (663)
Q Consensus 21 ~~G~~~~~~~i~~~L~~~~~~~~~vi~i~G----GKTtla~~v~~~~ 63 (663)
++||+++.+++...|........+.+-|+| |||||+++++...
T Consensus 2 fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~ 48 (185)
T PF13191_consen 2 FVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRL 48 (185)
T ss_dssp -TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 799999999999999533222457777777 9999999999933
No 70
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.40 E-value=0.00037 Score=72.08 Aligned_cols=88 Identities=14% Similarity=-0.013 Sum_probs=57.7
Q ss_pred EEEEEec----chhhHHHHHhcCCCccccCCCCccccCCceeeccCCCcceEeCCC--cchhHHHHHHHHHHHhCCCCCc
Q 037018 44 QFLTAVA----YKTAFVADIYNNNVDLSAMNPKLRVPKRFINKAFPVAFPVDVNCA--CNAQLNHILDDIIKSVMPPSRV 117 (663)
Q Consensus 44 ~vi~i~G----GKTtla~~v~~~~~~~~~~~~~~~~~~~F~~~~~~~~~~v~vs~~--~~~~~~~l~~~i~~~l~~~~~~ 117 (663)
+.++|+| |||||++.+++.. .. ++|+..+| |.++.. .. +.++++.+...+-.....
T Consensus 169 q~~~IvG~~g~GKTtL~~~i~~~I----------~~-nhfdv~v~-----VlLIgER~~E--VtDLqrsIlg~Vvast~d 230 (415)
T TIGR00767 169 QRGLIVAPPKAGKTVLLQKIAQAI----------TR-NHPEVELI-----VLLIDERPEE--VTDMQRSVKGEVVASTFD 230 (415)
T ss_pred CEEEEECCCCCChhHHHHHHHHhh----------cc-cCCceEEE-----EEEcCCCCcc--HHHHHHHhhceEEEecCC
Confidence 4466666 9999999999955 33 37999999 999977 56 999999995544332211
Q ss_pred --chhhhh-HhhHHHHHHHHh-hcCCcEEEEEeCCCC
Q 037018 118 --NVIISE-DYKLKTIILRDY-LTNKKDFIVLDDVFD 150 (663)
Q Consensus 118 --~~~~~~-~~~l~~~~l~~~-L~~kr~LlVLDdv~~ 150 (663)
...... ...+ ....+.. -.+|+++|++|++-.
T Consensus 231 ~p~~~~~~va~~v-~e~Ae~~~~~GkdVVLlIDEitR 266 (415)
T TIGR00767 231 EPASRHVQVAEMV-IEKAKRLVEHKKDVVILLDSITR 266 (415)
T ss_pred CChHHHHHHHHHH-HHHHHHHHHcCCCeEEEEEChhH
Confidence 111111 2222 2222222 358999999999976
No 71
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.39 E-value=2.1e-05 Score=86.55 Aligned_cols=239 Identities=25% Similarity=0.198 Sum_probs=114.4
Q ss_pred CCCcCeEeccCC-CCcc--chhhhcccccccEeeccCC--cccccc----hhhhcCcCCcEEEccCCCC-CCCCCCCcC-
Q 037018 394 LFHLKYLKLNIP-SLNC--LPSLLCTLLNLQTLEMPAS--YIDHSP----EGIWMMQKLMHLNFGSINL-PAPPKNYSS- 462 (663)
Q Consensus 394 l~~L~~L~L~~~-~i~~--lp~~i~~L~~L~~L~L~~~--~l~~lp----~~l~~l~~L~~L~l~~~~~-~~~~~~~l~- 462 (663)
++.|+.|.+.++ .+.. +-.....+++|+.|++++| .....+ .....+++|++|+++++.. ....-..+.
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 566666666665 3332 3344556667777777652 222111 1233456666666663221 111111111
Q ss_pred CCCCCcEeeCcCCC----CCChhhcCCCCCccEEEeecCCCccccchhhhhcCCCCCCEEEEeecCcccccccccccccc
Q 037018 463 SLKNLIFISSLNPS----SCTPDILGRLPNVQTLRISGDLSHYHSGVSKSLCELHKLECLQLVHEGRMWQLSRMVLSEYQ 538 (663)
Q Consensus 463 ~l~~L~~L~l~~~~----~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~lp~~~~~l~~ 538 (663)
.+++|+.|.+..|. ..+......+++|++|++++|.......+.....++++|+.|.+..+. .
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~-------------~ 333 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLN-------------G 333 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcC-------------C
Confidence 25555555544444 222233344555666666655321122233333344444444433211 1
Q ss_pred CCCCceEEEEecccCC---CCChhhhcCCCCCcEEEeecCCCCCceeeecCCCCCCcccEEEccCCCCcccccccccccc
Q 037018 539 FPPCLTQLSLSNTQLM---EDPMPALEKLPHLEVLKLKQNSYSERKLACVGSGSFPQLKILHLKSMLWLEEWTMGAGAMP 615 (663)
Q Consensus 539 ~l~~L~~L~L~~~~l~---~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~l~ 615 (663)
++.++.+.+.++... .........+++|+.+.+..+.......... ..+++.|. ..+........
T Consensus 334 -c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~-l~gc~~l~----------~~l~~~~~~~~ 401 (482)
T KOG1947|consen 334 -CPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELS-LRGCPNLT----------ESLELRLCRSD 401 (482)
T ss_pred -CccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHH-hcCCcccc----------hHHHHHhccCC
Confidence 233444444443221 1222345677888888887666333221122 33444441 22222233334
Q ss_pred ccceEEeecCCCCCCCc-cccCC-CCCCCEEEecCCCHHHHHhh
Q 037018 616 KLESLIVNPCAYLRKLP-EELWC-IKSLCKLELHWPQPELRKRL 657 (663)
Q Consensus 616 ~L~~L~l~~c~~l~~l~-~~l~~-l~sL~~L~l~~c~~~~~~~~ 657 (663)
.|+.|+++.|...+.-- ..... +.+++.+++.+|+......+
T Consensus 402 ~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~ 445 (482)
T KOG1947|consen 402 SLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVITLKSL 445 (482)
T ss_pred ccceEecccCccccccchHHHhhhhhccccCCccCcccccchhh
Confidence 48999999998765321 11112 78899999999986554444
No 72
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.38 E-value=1.1e-05 Score=69.07 Aligned_cols=103 Identities=21% Similarity=0.239 Sum_probs=63.6
Q ss_pred cccEEEecCCcCcccC---ccCCCCCCcCeEeccCCCCccchhhhcc-cccccEeeccCCcccccchhhhcCcCCcEEEc
Q 037018 373 HLRVLNLGSAILYQYP---PGLENLFHLKYLKLNIPSLNCLPSLLCT-LLNLQTLEMPASYIDHSPEGIWMMQKLMHLNF 448 (663)
Q Consensus 373 ~Lr~L~L~~~~l~~lp---~~~~~l~~L~~L~L~~~~i~~lp~~i~~-L~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~l 448 (663)
.+-.++|++|.+..++ ..+....+|+..+|++|.+..+|..+.. .+.+++|++++|.+..+|..+..++.|+.|++
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl 107 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNL 107 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhccc
Confidence 3455666666654333 2334455666667777777777766653 34677777777777777777777777777777
Q ss_pred cCCCCCCCCCCCcCCCCCCcEeeCcCCC
Q 037018 449 GSINLPAPPKNYSSSLKNLIFISSLNPS 476 (663)
Q Consensus 449 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 476 (663)
+ ++.....|..+..+.++-.|+...+.
T Consensus 108 ~-~N~l~~~p~vi~~L~~l~~Lds~~na 134 (177)
T KOG4579|consen 108 R-FNPLNAEPRVIAPLIKLDMLDSPENA 134 (177)
T ss_pred c-cCccccchHHHHHHHhHHHhcCCCCc
Confidence 7 55555555555555555555554443
No 73
>PF13173 AAA_14: AAA domain
Probab=97.30 E-value=0.0005 Score=60.57 Aligned_cols=48 Identities=21% Similarity=0.396 Sum_probs=36.3
Q ss_pred HHHHHhhcCCcEEEEEeCCCCChhhHHHHHhhCCCCCCCceEEEEEeCC
Q 037018 130 IILRDYLTNKKDFIVLDDVFDDREIWNDLEKFLPDNQNGSRVLILVTDP 178 (663)
Q Consensus 130 ~~l~~~L~~kr~LlVLDdv~~~~~~~~~l~~~~~~~~~gskIiiT~r~~ 178 (663)
..+.+....++.+|+||+|-. ..+|......+-+..+..+|++|....
T Consensus 52 ~~~~~~~~~~~~~i~iDEiq~-~~~~~~~lk~l~d~~~~~~ii~tgS~~ 99 (128)
T PF13173_consen 52 EYFLELIKPGKKYIFIDEIQY-LPDWEDALKFLVDNGPNIKIILTGSSS 99 (128)
T ss_pred HHHHHhhccCCcEEEEehhhh-hccHHHHHHHHHHhccCceEEEEccch
Confidence 333444445788899999999 888888888787766778999996644
No 74
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=97.24 E-value=0.0014 Score=64.12 Aligned_cols=41 Identities=12% Similarity=-0.005 Sum_probs=28.8
Q ss_pred ccchhhcHHHHHHHHhcCCCCceEEEEEec-chhhHHHHHhc
Q 037018 21 SKTVKVKVKAVLVWLFMLDSMWLQFLTAVA-YKTAFVADIYN 61 (663)
Q Consensus 21 ~~G~~~~~~~i~~~L~~~~~~~~~vi~i~G-GKTtla~~v~~ 61 (663)
++||++++++|.+++..+....+-|.|-.| |||+|++++.+
T Consensus 1 F~gR~~el~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~ 42 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGPSQHILLYGPRGSGKTSLLKEFIN 42 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--SSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHH
Confidence 689999999999999876432333333344 99999999999
No 75
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.22 E-value=0.00072 Score=59.73 Aligned_cols=110 Identities=15% Similarity=0.244 Sum_probs=70.9
Q ss_pred eEEEEEec-chhhHHHHHhcCCCccccCCCCccccCC-----ceeeccCCCcceEeCCCcchhHHHHHHHHHHHhCCCCC
Q 037018 43 LQFLTAVA-YKTAFVADIYNNNVDLSAMNPKLRVPKR-----FINKAFPVAFPVDVNCACNAQLNHILDDIIKSVMPPSR 116 (663)
Q Consensus 43 ~~vi~i~G-GKTtla~~v~~~~~~~~~~~~~~~~~~~-----F~~~~~~~~~~v~vs~~~~~~~~~l~~~i~~~l~~~~~ 116 (663)
+-+.|-.| ||||+++++.++ ...+ -...+| +......+ ...+.+.|+.++.....
T Consensus 7 ~~i~G~~G~GKT~~~~~~~~~------------~~~~~~~~~~~~~~~-----~~~~~~~~--~~~~~~~i~~~l~~~~~ 67 (131)
T PF13401_consen 7 LVISGPPGSGKTTLIKRLARQ------------LNAEAEIKNHPDVIY-----VNCPSSRT--PRDFAQEILEALGLPLK 67 (131)
T ss_dssp EEEEE-TTSSHHHHHHHHHHH------------HHHHHHHCCCEEEEE-----EEHHHHSS--HHHHHHHHHHHHT-SSS
T ss_pred cEEEcCCCCCHHHHHHHHHHH------------hHHhhhccCCCcEEE-----EEeCCCCC--HHHHHHHHHHHhCcccc
Confidence 34444555 999999999993 3322 234557 87777777 99999999999998754
Q ss_pred cchhhhhHhhHHHHHHHHhhcCCc-EEEEEeCCCC--ChhhHHHHHhhCCCCCCCceEEEEEeC
Q 037018 117 VNVIISEDYKLKTIILRDYLTNKK-DFIVLDDVFD--DREIWNDLEKFLPDNQNGSRVLILVTD 177 (663)
Q Consensus 117 ~~~~~~~~~~l~~~~l~~~L~~kr-~LlVLDdv~~--~~~~~~~l~~~~~~~~~gskIiiT~r~ 177 (663)
.. .. ...+ ...+.+.+...+ .+||+||+.. +...++.+..-.. ..+-+||+....
T Consensus 68 ~~--~~-~~~l-~~~~~~~l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 68 SR--QT-SDEL-RSLLIDALDRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp ST--S--HHHH-HHHHHHHHHHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred cc--CC-HHHH-HHHHHHHHHhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 30 11 4555 566777776544 5999999876 1234455544333 557777777543
No 76
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.18 E-value=0.00056 Score=62.91 Aligned_cols=100 Identities=19% Similarity=0.190 Sum_probs=49.4
Q ss_pred CcCeEeccCCCCccchhhhcccccccEeeccCCcccccchhhh-cCcCCcEEEccCCCC--CCCCCCCcCCCCCCcEeeC
Q 037018 396 HLKYLKLNIPSLNCLPSLLCTLLNLQTLEMPASYIDHSPEGIW-MMQKLMHLNFGSINL--PAPPKNYSSSLKNLIFISS 472 (663)
Q Consensus 396 ~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~l~-~l~~L~~L~l~~~~~--~~~~~~~l~~l~~L~~L~l 472 (663)
+...++|+.|++..++ .+..++.|.+|.+.+|.+..+...+. .+++|+.|.+.+|.+ .+.+ ..+..|+.|++|.+
T Consensus 43 ~~d~iDLtdNdl~~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl-~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDL-DPLASCPKLEYLTL 120 (233)
T ss_pred ccceecccccchhhcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhc-chhccCCccceeee
Confidence 4445555555554333 33345555555555555555543333 234555555552222 1111 12445556666666
Q ss_pred cCCC-----CCChhhcCCCCCccEEEeecC
Q 037018 473 LNPS-----SCTPDILGRLPNVQTLRISGD 497 (663)
Q Consensus 473 ~~~~-----~~~~~~l~~l~~L~~L~l~~~ 497 (663)
.+++ .+-.-.+..+|+|+.|++.+.
T Consensus 121 l~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 121 LGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred cCCchhcccCceeEEEEecCcceEeehhhh
Confidence 5555 222234556677777777665
No 77
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.17 E-value=7.8e-05 Score=64.00 Aligned_cols=72 Identities=25% Similarity=0.385 Sum_probs=44.8
Q ss_pred hHHhcCCCcccEEEecCCcCcccCccCCCCCCcCeEeccCCCCccchhhhcccccccEeeccCCcccccchh
Q 037018 365 ENFCKKFKHLRVLNLGSAILYQYPPGLENLFHLKYLKLNIPSLNCLPSLLCTLLNLQTLEMPASYIDHSPEG 436 (663)
Q Consensus 365 ~~~~~~l~~Lr~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~ 436 (663)
+.|..+++.++.|++++|.+.++|..+..++.||.|+++.|.+...|..+..|.+|-.|+..++....+|..
T Consensus 70 ~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~~na~~eid~d 141 (177)
T KOG4579|consen 70 KKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSPENARAEIDVD 141 (177)
T ss_pred HHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhcCCCCccccCcHH
Confidence 444455556666666666666666666666666666666666666666666666666666666655555544
No 78
>PTZ00202 tuzin; Provisional
Probab=97.03 E-value=0.0077 Score=62.68 Aligned_cols=103 Identities=12% Similarity=0.036 Sum_probs=67.7
Q ss_pred CCccccccchhhcHHHHHHHHhcCCCCceEEEEEec----chhhHHHHHhcCCCccccCCCCccccCCceeeccCCCcce
Q 037018 15 SSTSCSSKTVKVKVKAVLVWLFMLDSMWLQFLTAVA----YKTAFVADIYNNNVDLSAMNPKLRVPKRFINKAFPVAFPV 90 (663)
Q Consensus 15 ~~~~~~~~G~~~~~~~i~~~L~~~~~~~~~vi~i~G----GKTtla~~v~~~~~~~~~~~~~~~~~~~F~~~~~~~~~~v 90 (663)
+.+...++||+.+...+...|...+....+++.|.| |||||++.+.... . +- ++
T Consensus 258 Pa~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l------------~--~~--qL------ 315 (550)
T PTZ00202 258 PAVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKE------------G--MP--AV------ 315 (550)
T ss_pred CCCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcC------------C--ce--EE------
Confidence 345568999999999999999764443446888888 9999999999843 2 11 22
Q ss_pred EeCCCcchhHHHHHHHHHHHhCCCCCcchhhhh-HhhHHHHHHHHh-hc-CCcEEEEE
Q 037018 91 DVNCACNAQLNHILDDIIKSVMPPSRVNVIISE-DYKLKTIILRDY-LT-NKKDFIVL 145 (663)
Q Consensus 91 ~vs~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~-~~~l~~~~l~~~-L~-~kr~LlVL 145 (663)
.....+ ..++++.|+.+|+.+.... ... .+.+ .+.+.+. -. +++.+||+
T Consensus 316 -~vNprg--~eElLr~LL~ALGV~p~~~--k~dLLrqI-qeaLl~~~~e~GrtPVLII 367 (550)
T PTZ00202 316 -FVDVRG--TEDTLRSVVKALGVPNVEA--CGDLLDFI-SEACRRAKKMNGETPLLVL 367 (550)
T ss_pred -EECCCC--HHHHHHHHHHHcCCCCccc--HHHHHHHH-HHHHHHHHHhCCCCEEEEE
Confidence 222226 7899999999999743211 112 4444 4443333 23 56666666
No 79
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.00 E-value=0.00096 Score=61.38 Aligned_cols=86 Identities=28% Similarity=0.383 Sum_probs=43.9
Q ss_pred cCCCCCCEEEEeecCccccccccccccccCCCCceEEEEecccCCC-CChhhhcCCCCCcEEEeecCCCCCce--eeecC
Q 037018 510 CELHKLECLQLVHEGRMWQLSRMVLSEYQFPPCLTQLSLSNTQLME-DPMPALEKLPHLEVLKLKQNSYSERK--LACVG 586 (663)
Q Consensus 510 ~~l~~L~~L~l~~~~~l~~lp~~~~~l~~~l~~L~~L~L~~~~l~~-~~~~~l~~l~~L~~L~L~~~~~~~~~--~~~~~ 586 (663)
..++.|.+|.+.. |.++.+.. .+..++++|..|.+.+|.+.. ..+..+..||.|++|.+-+|...... -...
T Consensus 61 p~l~rL~tLll~n-NrIt~I~p---~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yv- 135 (233)
T KOG1644|consen 61 PHLPRLHTLLLNN-NRITRIDP---DLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYV- 135 (233)
T ss_pred CCccccceEEecC-Ccceeecc---chhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCchhcccCceeEE-
Confidence 3455666666664 55655554 444445566666666655422 12334555666666666555543221 1111
Q ss_pred CCCCCcccEEEccC
Q 037018 587 SGSFPQLKILHLKS 600 (663)
Q Consensus 587 ~~~~~~L~~L~L~~ 600 (663)
+-.+|+|+.|++.+
T Consensus 136 l~klp~l~~LDF~k 149 (233)
T KOG1644|consen 136 LYKLPSLRTLDFQK 149 (233)
T ss_pred EEecCcceEeehhh
Confidence 33456666666554
No 80
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=96.94 E-value=0.0043 Score=64.72 Aligned_cols=131 Identities=16% Similarity=0.137 Sum_probs=79.4
Q ss_pred cccchhhcHHHHHHHHhc---CCC-CceEEEEEec-chhhHHHHHhcCCCccccCCCCccccCCcee--eccCCCcceEe
Q 037018 20 SSKTVKVKVKAVLVWLFM---LDS-MWLQFLTAVA-YKTAFVADIYNNNVDLSAMNPKLRVPKRFIN--KAFPVAFPVDV 92 (663)
Q Consensus 20 ~~~G~~~~~~~i~~~L~~---~~~-~~~~vi~i~G-GKTtla~~v~~~~~~~~~~~~~~~~~~~F~~--~~~~~~~~v~v 92 (663)
.+.+|+++.+++...|.. +.. ..+-+.|-.| |||+.++.|.+ ++...... .+. |..
T Consensus 18 ~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~------------~l~~~~~~~~~~y-----INc 80 (366)
T COG1474 18 ELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVME------------ELEESSANVEVVY-----INC 80 (366)
T ss_pred cccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHH------------HHHhhhccCceEE-----Eee
Confidence 399999999999988854 222 2233333334 99999999999 44443222 233 333
Q ss_pred CCCcchhHHHHHHHHHHHhCCCCCcchhhhhHhhHHHHHHHHhhc--CCcEEEEEeCCCC--ChhhHHHHHhhCCCC-CC
Q 037018 93 NCACNAQLNHILDDIIKSVMPPSRVNVIISEDYKLKTIILRDYLT--NKKDFIVLDDVFD--DREIWNDLEKFLPDN-QN 167 (663)
Q Consensus 93 s~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~~l~~~L~--~kr~LlVLDdv~~--~~~~~~~l~~~~~~~-~~ 167 (663)
-.... ..++...|+++++..... +.. ..+. ...+.+.+. ++.+.||||++.. +... +.+..-+... ..
T Consensus 81 ~~~~t--~~~i~~~i~~~~~~~p~~-g~~--~~~~-~~~l~~~~~~~~~~~IvvLDEid~L~~~~~-~~LY~L~r~~~~~ 153 (366)
T COG1474 81 LELRT--PYQVLSKILNKLGKVPLT-GDS--SLEI-LKRLYDNLSKKGKTVIVILDEVDALVDKDG-EVLYSLLRAPGEN 153 (366)
T ss_pred eeCCC--HHHHHHHHHHHcCCCCCC-CCc--hHHH-HHHHHHHHHhcCCeEEEEEcchhhhccccc-hHHHHHHhhcccc
Confidence 34455 889999999999732111 112 2333 455555554 5899999999987 2222 4444433322 22
Q ss_pred CceEEEE
Q 037018 168 GSRVLIL 174 (663)
Q Consensus 168 gskIiiT 174 (663)
.++|++-
T Consensus 154 ~~~v~vi 160 (366)
T COG1474 154 KVKVSII 160 (366)
T ss_pred ceeEEEE
Confidence 5766655
No 81
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=96.93 E-value=0.0052 Score=62.15 Aligned_cols=109 Identities=12% Similarity=0.124 Sum_probs=77.1
Q ss_pred ccccchhhcHHHHHHHHhcCCCCceEEEEEec----chhhHHHHHhcCCCccccCCCCccccCCceeeccCCCcceEeCC
Q 037018 19 CSSKTVKVKVKAVLVWLFMLDSMWLQFLTAVA----YKTAFVADIYNNNVDLSAMNPKLRVPKRFINKAFPVAFPVDVNC 94 (663)
Q Consensus 19 ~~~~G~~~~~~~i~~~L~~~~~~~~~vi~i~G----GKTtla~~v~~~~~~~~~~~~~~~~~~~F~~~~~~~~~~v~vs~ 94 (663)
+.+-+|+.++..+..++...+..-...|-|+| |||.+.+++++.. . ...+| +++-.
T Consensus 6 ~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~----------n-----~~~vw-----~n~~e 65 (438)
T KOG2543|consen 6 PNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKL----------N-----LENVW-----LNCVE 65 (438)
T ss_pred cCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhc----------C-----Cccee-----eehHH
Confidence 45789999999999999877652234447777 9999999999944 2 23568 88888
Q ss_pred CcchhHHHHHHHHHHHhC-CCCCcchhhh--h-HhhHHHHHHHH--hhc--CCcEEEEEeCCCC
Q 037018 95 ACNAQLNHILDDIIKSVM-PPSRVNVIIS--E-DYKLKTIILRD--YLT--NKKDFIVLDDVFD 150 (663)
Q Consensus 95 ~~~~~~~~l~~~i~~~l~-~~~~~~~~~~--~-~~~l~~~~l~~--~L~--~kr~LlVLDdv~~ 150 (663)
.+. ...+.+.|+.+.. .+++....+. . .... ...+.+ ... ++.++||||++..
T Consensus 66 cft--~~~lle~IL~~~~~~d~dg~~~~~~~en~~d~-i~~l~q~~~~t~~d~~~~liLDnad~ 126 (438)
T KOG2543|consen 66 CFT--YAILLEKILNKSQLADKDGDKVEGDAENFSDF-IYLLVQWPAATNRDQKVFLILDNADA 126 (438)
T ss_pred hcc--HHHHHHHHHHHhccCCCchhhhhhHHHHHHHH-HHHHHhhHHhhccCceEEEEEcCHHh
Confidence 999 9999999999995 4433322222 1 2333 333333 232 4699999999987
No 82
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=96.92 E-value=0.0039 Score=69.97 Aligned_cols=144 Identities=14% Similarity=0.061 Sum_probs=80.0
Q ss_pred CccCCccccccchhhcHHHHHHHHhcC--CCCceEEEEEec----chhhHHHHHhcCCCccccCCCCccc-cCCceeecc
Q 037018 12 THSSSTSCSSKTVKVKVKAVLVWLFML--DSMWLQFLTAVA----YKTAFVADIYNNNVDLSAMNPKLRV-PKRFINKAF 84 (663)
Q Consensus 12 ~~~~~~~~~~~G~~~~~~~i~~~L~~~--~~~~~~vi~i~G----GKTtla~~v~~~~~~~~~~~~~~~~-~~~F~~~~~ 84 (663)
.+..+++ .+.|||+++++|...|... +...-.++-|+| |||+.++.|.+.... +. ........+
T Consensus 749 ~~DYVPD-~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqe--------eaeqk~lp~f~v 819 (1164)
T PTZ00112 749 QLDVVPK-YLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQH--------KTKQKLLPSFNV 819 (1164)
T ss_pred CcccCCC-cCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHH--------HHhhccCCCceE
Confidence 3444444 7999999999999888642 111224444555 999999999873200 00 111121223
Q ss_pred CCCcceEeCC--CcchhHHHHHHHHHHHhCCCCCcchhhhhHhhHHHHHHHHhhc---CCcEEEEEeCCCC-ChhhHHHH
Q 037018 85 PVAFPVDVNC--ACNAQLNHILDDIIKSVMPPSRVNVIISEDYKLKTIILRDYLT---NKKDFIVLDDVFD-DREIWNDL 158 (663)
Q Consensus 85 ~~~~~v~vs~--~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~~l~~~L~---~kr~LlVLDdv~~-~~~~~~~l 158 (663)
|.+.. -.+ ...+.+.|++++.......+.. ..+. ...+.+.+. +...+||||+|.. ....-+.|
T Consensus 820 -----VYINCm~Lst--p~sIYqvI~qqL~g~~P~~Gls--S~ev-LerLF~~L~k~~r~v~IIILDEID~L~kK~QDVL 889 (1164)
T PTZ00112 820 -----FEINGMNVVH--PNAAYQVLYKQLFNKKPPNALN--SFKI-LDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVL 889 (1164)
T ss_pred -----EEEeCCccCC--HHHHHHHHHHHHcCCCCCcccc--HHHH-HHHHHhhhhcccccceEEEeehHhhhCccHHHHH
Confidence 44433 345 7788889999996544322211 2233 345555542 2345899999987 21122334
Q ss_pred HhhCCC-CCCCceEEEE
Q 037018 159 EKFLPD-NQNGSRVLIL 174 (663)
Q Consensus 159 ~~~~~~-~~~gskIiiT 174 (663)
...+.+ ...+++|+|.
T Consensus 890 YnLFR~~~~s~SKLiLI 906 (1164)
T PTZ00112 890 FTLFDWPTKINSKLVLI 906 (1164)
T ss_pred HHHHHHhhccCCeEEEE
Confidence 433322 2357787775
No 83
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.76 E-value=0.00032 Score=67.25 Aligned_cols=86 Identities=23% Similarity=0.134 Sum_probs=47.9
Q ss_pred CCCceEEEEecc--cCCCCChhhhcCCCCCcEEEeecCCCCCceeeecCCCCCCcccEEEccCCCCcccc---ccccccc
Q 037018 540 PPCLTQLSLSNT--QLMEDPMPALEKLPHLEVLKLKQNSYSERKLACVGSGSFPQLKILHLKSMLWLEEW---TMGAGAM 614 (663)
Q Consensus 540 l~~L~~L~L~~~--~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l---~~~~~~l 614 (663)
+++|+.|.++.| .+..........+|+|++|++++|.+........ ...+.+|..|++.+|+...-- ...+.-+
T Consensus 64 Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~p-l~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll 142 (260)
T KOG2739|consen 64 LPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRP-LKELENLKSLDLFNCSVTNLDDYREKVFLLL 142 (260)
T ss_pred cchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccch-hhhhcchhhhhcccCCccccccHHHHHHHHh
Confidence 677777777777 4444444445556777777777776654211111 455666777777766543310 1123456
Q ss_pred cccceEEeecCC
Q 037018 615 PKLESLIVNPCA 626 (663)
Q Consensus 615 ~~L~~L~l~~c~ 626 (663)
|+|+.|+-..+.
T Consensus 143 ~~L~~LD~~dv~ 154 (260)
T KOG2739|consen 143 PSLKYLDGCDVD 154 (260)
T ss_pred hhhccccccccC
Confidence 666666655543
No 84
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=96.45 E-value=0.016 Score=61.19 Aligned_cols=106 Identities=9% Similarity=-0.022 Sum_probs=68.1
Q ss_pred ccccchhhcHHHHHHHHhcCCCCceEEEEEec-chhhHHHHHhcCCCccccCCCCccccCCceeeccCCCcceEeCCCcc
Q 037018 19 CSSKTVKVKVKAVLVWLFMLDSMWLQFLTAVA-YKTAFVADIYNNNVDLSAMNPKLRVPKRFINKAFPVAFPVDVNCACN 97 (663)
Q Consensus 19 ~~~~G~~~~~~~i~~~L~~~~~~~~~vi~i~G-GKTtla~~v~~~~~~~~~~~~~~~~~~~F~~~~~~~~~~v~vs~~~~ 97 (663)
..+++.+...+.+...|.... .+-+.|..| ||||+|+++++.. .....|+...| |+++.+++
T Consensus 175 ~d~~i~e~~le~l~~~L~~~~--~iil~GppGtGKT~lA~~la~~l----------~~~~~~~~v~~-----VtFHpsyS 237 (459)
T PRK11331 175 NDLFIPETTIETILKRLTIKK--NIILQGPPGVGKTFVARRLAYLL----------TGEKAPQRVNM-----VQFHQSYS 237 (459)
T ss_pred hcccCCHHHHHHHHHHHhcCC--CEEEECCCCCCHHHHHHHHHHHh----------cCCcccceeeE-----Eeeccccc
Confidence 357888999999999988654 466666666 9999999999855 34457788889 99999888
Q ss_pred hhHHHHHHHHHHHhCCCCCcchhhhhHhhHHHHHHHHhhc--CCcEEEEEeCCCC
Q 037018 98 AQLNHILDDIIKSVMPPSRVNVIISEDYKLKTIILRDYLT--NKKDFIVLDDVFD 150 (663)
Q Consensus 98 ~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~~l~~~L~--~kr~LlVLDdv~~ 150 (663)
..++..-. ......-.... .-. .+.+++.-. ++++.+|+|++..
T Consensus 238 --YeDFI~G~----rP~~vgy~~~~--G~f-~~~~~~A~~~p~~~~vliIDEINR 283 (459)
T PRK11331 238 --YEDFIQGY----RPNGVGFRRKD--GIF-YNFCQQAKEQPEKKYVFIIDEINR 283 (459)
T ss_pred --HHHHhccc----CCCCCCeEecC--chH-HHHHHHHHhcccCCcEEEEehhhc
Confidence 55554322 11110000000 111 122222222 4789999999987
No 85
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.41 E-value=0.039 Score=53.59 Aligned_cols=31 Identities=10% Similarity=0.161 Sum_probs=23.5
Q ss_pred ceEEEEEec-chhhHHHHHhcCCCccccCCCCccccCCceeecc
Q 037018 42 WLQFLTAVA-YKTAFVADIYNNNVDLSAMNPKLRVPKRFINKAF 84 (663)
Q Consensus 42 ~~~vi~i~G-GKTtla~~v~~~~~~~~~~~~~~~~~~~F~~~~~ 84 (663)
+.-|||=.| ||||++..+.. ...++|.+..+
T Consensus 15 r~viIG~sGSGKT~li~~lL~------------~~~~~f~~I~l 46 (241)
T PF04665_consen 15 RMVIIGKSGSGKTTLIKSLLY------------YLRHKFDHIFL 46 (241)
T ss_pred eEEEECCCCCCHHHHHHHHHH------------hhcccCCEEEE
Confidence 445555566 99999999998 66788976665
No 86
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.40 E-value=0.0013 Score=63.07 Aligned_cols=81 Identities=21% Similarity=0.178 Sum_probs=40.4
Q ss_pred cCCCcccEEEecCCc--Cc-ccCccCCCCCCcCeEeccCCCCccc--hhhhcccccccEeeccCCcccccch----hhhc
Q 037018 369 KKFKHLRVLNLGSAI--LY-QYPPGLENLFHLKYLKLNIPSLNCL--PSLLCTLLNLQTLEMPASYIDHSPE----GIWM 439 (663)
Q Consensus 369 ~~l~~Lr~L~L~~~~--l~-~lp~~~~~l~~L~~L~L~~~~i~~l--p~~i~~L~~L~~L~L~~~~l~~lp~----~l~~ 439 (663)
..+++|+.|.++.|. +. .++.....+++|++|++++|.|.-+ -..+.++.+|..|++.+|....+-. .+.-
T Consensus 62 P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~l 141 (260)
T KOG2739|consen 62 PKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLL 141 (260)
T ss_pred CCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHHHH
Confidence 555666666666663 22 3333334446666666666655421 1133455566666666663333321 1334
Q ss_pred CcCCcEEEcc
Q 037018 440 MQKLMHLNFG 449 (663)
Q Consensus 440 l~~L~~L~l~ 449 (663)
+++|++|+-.
T Consensus 142 l~~L~~LD~~ 151 (260)
T KOG2739|consen 142 LPSLKYLDGC 151 (260)
T ss_pred hhhhcccccc
Confidence 5555555543
No 87
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=96.34 E-value=0.0083 Score=67.36 Aligned_cols=134 Identities=16% Similarity=0.077 Sum_probs=79.6
Q ss_pred ccccchhhcHHHHHHHHhcCCCCceEEEEEec----chhhHHHHHhcCCCccccCCCCccccCCce---eeccCCCcceE
Q 037018 19 CSSKTVKVKVKAVLVWLFMLDSMWLQFLTAVA----YKTAFVADIYNNNVDLSAMNPKLRVPKRFI---NKAFPVAFPVD 91 (663)
Q Consensus 19 ~~~~G~~~~~~~i~~~L~~~~~~~~~vi~i~G----GKTtla~~v~~~~~~~~~~~~~~~~~~~F~---~~~~~~~~~v~ 91 (663)
..++|.+..++.+...+.... ...+.|+| ||||+|+.+++.. +....+. ..-| +.
T Consensus 154 ~~iiGqs~~~~~l~~~ia~~~---~~~vlL~Gp~GtGKTTLAr~i~~~~----------~~~~~~~~~~~~~f-----v~ 215 (615)
T TIGR02903 154 SEIVGQERAIKALLAKVASPF---PQHIILYGPPGVGKTTAARLALEEA----------KKLKHTPFAEDAPF-----VE 215 (615)
T ss_pred HhceeCcHHHHHHHHHHhcCC---CCeEEEECCCCCCHHHHHHHHHHhh----------hhccCCcccCCCCe-----EE
Confidence 368999999999888775432 34577777 9999999999855 3333331 2345 54
Q ss_pred eCCC---cchhHHHHHHHH---------------HHHhCCCCC---------c-----chhhhhHhhHHHHHHHHhhcCC
Q 037018 92 VNCA---CNAQLNHILDDI---------------IKSVMPPSR---------V-----NVIISEDYKLKTIILRDYLTNK 139 (663)
Q Consensus 92 vs~~---~~~~~~~l~~~i---------------~~~l~~~~~---------~-----~~~~~~~~~l~~~~l~~~L~~k 139 (663)
+... .+ ...+...+ +...+.... . .+++.+.... +..+.+.++++
T Consensus 216 i~~~~l~~d--~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~-Q~~Ll~~Le~~ 292 (615)
T TIGR02903 216 VDGTTLRWD--PREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLL-QNKLLKVLEDK 292 (615)
T ss_pred EechhccCC--HHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHH-HHHHHHHHhhC
Confidence 4321 12 22221111 111111000 0 0012222345 78888999999
Q ss_pred cEEEEEeCCCC-ChhhHHHHHhhCCCCCCCceEEE
Q 037018 140 KDFIVLDDVFD-DREIWNDLEKFLPDNQNGSRVLI 173 (663)
Q Consensus 140 r~LlVLDdv~~-~~~~~~~l~~~~~~~~~gskIii 173 (663)
+++++.|+.|. +...|+.+...+....+...|+|
T Consensus 293 ~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI 327 (615)
T TIGR02903 293 RVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLI 327 (615)
T ss_pred eEEeecceeccCCcccchhhhhhcccCccceEEEE
Confidence 99999888776 45678888877776665555555
No 88
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.29 E-value=0.00056 Score=65.81 Aligned_cols=98 Identities=21% Similarity=0.243 Sum_probs=66.6
Q ss_pred CCcccEEEeecCccccccccchhHHhcCCCcccEEEecCCcCcccCccCCCCCCcCeEeccCCCCccch--hhhcccccc
Q 037018 343 DMYLQSFLNHTLESDRLALIDCENFCKKFKHLRVLNLGSAILYQYPPGLENLFHLKYLKLNIPSLNCLP--SLLCTLLNL 420 (663)
Q Consensus 343 ~~~lr~L~l~~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp--~~i~~L~~L 420 (663)
..+++-|.+.++... ++. +..+|+.|+||.|+-|.++.+ ..+..|.+|+.|.|+.|.|..+. .-+.++++|
T Consensus 18 l~~vkKLNcwg~~L~-----DIs-ic~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsL 90 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLD-----DIS-ICEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKNCIESLDELEYLKNLPSL 90 (388)
T ss_pred HHHhhhhcccCCCcc-----HHH-HHHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchh
Confidence 345556666666553 233 338888888888888888765 35667888888888888887664 345678888
Q ss_pred cEeeccCC-ccccc-ch----hhhcCcCCcEEE
Q 037018 421 QTLEMPAS-YIDHS-PE----GIWMMQKLMHLN 447 (663)
Q Consensus 421 ~~L~L~~~-~l~~l-p~----~l~~l~~L~~L~ 447 (663)
+.|.|..| .-+.- +. -+..||+|+.|+
T Consensus 91 r~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 91 RTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 88888777 32222 22 156678888876
No 89
>PRK13342 recombination factor protein RarA; Reviewed
Probab=96.29 E-value=0.019 Score=61.57 Aligned_cols=106 Identities=12% Similarity=0.135 Sum_probs=60.3
Q ss_pred cccchhhcHHH---HHHHHhcCCCCceEEEEEec----chhhHHHHHhcCCCccccCCCCccccCCceeeccCCCcceEe
Q 037018 20 SSKTVKVKVKA---VLVWLFMLDSMWLQFLTAVA----YKTAFVADIYNNNVDLSAMNPKLRVPKRFINKAFPVAFPVDV 92 (663)
Q Consensus 20 ~~~G~~~~~~~---i~~~L~~~~~~~~~vi~i~G----GKTtla~~v~~~~~~~~~~~~~~~~~~~F~~~~~~~~~~v~v 92 (663)
.++|.+..+.+ +.+++.... ...+-++| ||||+|+.+.+ .....| +.+
T Consensus 13 d~vGq~~~v~~~~~L~~~i~~~~---~~~ilL~GppGtGKTtLA~~ia~------------~~~~~~----------~~l 67 (413)
T PRK13342 13 EVVGQEHLLGPGKPLRRMIEAGR---LSSMILWGPPGTGKTTLARIIAG------------ATDAPF----------EAL 67 (413)
T ss_pred HhcCcHHHhCcchHHHHHHHcCC---CceEEEECCCCCCHHHHHHHHHH------------HhCCCE----------EEE
Confidence 57787776555 667665543 34455677 99999999999 333333 333
Q ss_pred CCCcchhHHHHHHHHHHHhCCCCCcchhhhhHhhHHHHHHHHhhcCCcEEEEEeCCCC-ChhhHHHHHhhCCCCCCCceE
Q 037018 93 NCACNAQLNHILDDIIKSVMPPSRVNVIISEDYKLKTIILRDYLTNKKDFIVLDDVFD-DREIWNDLEKFLPDNQNGSRV 171 (663)
Q Consensus 93 s~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~~l~~~L~~kr~LlVLDdv~~-~~~~~~~l~~~~~~~~~gskI 171 (663)
+.... +... .++++.. . .. ....+++.+|++|+++. ...+++.+...+.. |..+
T Consensus 68 ~a~~~-~~~~-ir~ii~~----------------~-~~---~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le~---~~ii 122 (413)
T PRK13342 68 SAVTS-GVKD-LREVIEE----------------A-RQ---RRSAGRRTILFIDEIHRFNKAQQDALLPHVED---GTIT 122 (413)
T ss_pred ecccc-cHHH-HHHHHHH----------------H-HH---hhhcCCceEEEEechhhhCHHHHHHHHHHhhc---CcEE
Confidence 22211 0111 1112111 1 01 11246888999999997 56677777766542 5555
Q ss_pred EEEE
Q 037018 172 LILV 175 (663)
Q Consensus 172 iiT~ 175 (663)
+|.+
T Consensus 123 lI~a 126 (413)
T PRK13342 123 LIGA 126 (413)
T ss_pred EEEe
Confidence 5543
No 90
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=96.16 E-value=0.041 Score=56.83 Aligned_cols=53 Identities=9% Similarity=-0.147 Sum_probs=39.0
Q ss_pred cCCccCccCCccccccchhhcHHHHHHHHhcCCCCceEEEEEec----chhhHHHHHhcC
Q 037018 7 LRKPLTHSSSTSCSSKTVKVKVKAVLVWLFMLDSMWLQFLTAVA----YKTAFVADIYNN 62 (663)
Q Consensus 7 ~~~~~~~~~~~~~~~~G~~~~~~~i~~~L~~~~~~~~~vi~i~G----GKTtla~~v~~~ 62 (663)
..|..-+.+..-..++|+++.++.+.+++..... ..+-++| ||||+|+.+.+.
T Consensus 5 ~~w~~kyrP~~~~~~~g~~~~~~~l~~~i~~~~~---~~~ll~G~~G~GKt~~~~~l~~~ 61 (319)
T PRK00440 5 EIWVEKYRPRTLDEIVGQEEIVERLKSYVKEKNM---PHLLFAGPPGTGKTTAALALARE 61 (319)
T ss_pred CccchhhCCCcHHHhcCcHHHHHHHHHHHhCCCC---CeEEEECCCCCCHHHHHHHHHHH
Confidence 4455555545555689999999999999876543 3356666 999999999983
No 91
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=96.13 E-value=0.01 Score=57.52 Aligned_cols=120 Identities=13% Similarity=0.121 Sum_probs=68.9
Q ss_pred cch-hhcHHHHHHHHhcCCCCceEEEEEec----chhhHHHHHhcCCCccccCCCCccccCCceeeccCCCcceEeCCCc
Q 037018 22 KTV-KVKVKAVLVWLFMLDSMWLQFLTAVA----YKTAFVADIYNNNVDLSAMNPKLRVPKRFINKAFPVAFPVDVNCAC 96 (663)
Q Consensus 22 ~G~-~~~~~~i~~~L~~~~~~~~~vi~i~G----GKTtla~~v~~~~~~~~~~~~~~~~~~~F~~~~~~~~~~v~vs~~~ 96 (663)
+|- ++..-+....+...+......+-|+| |||.|.+++++ ++.+.....-. ++ .
T Consensus 12 ~g~~N~~a~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~------------~~~~~~~~~~v-----~y----~ 70 (219)
T PF00308_consen 12 VGESNELAYAAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIAN------------EAQKQHPGKRV-----VY----L 70 (219)
T ss_dssp -TTTTHHHHHHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHH------------HHHHHCTTS-E-----EE----E
T ss_pred cCCcHHHHHHHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHH------------HHHhccccccc-----ee----e
Confidence 453 44455555556555443344567788 99999999999 54443322111 22 2
Q ss_pred chhHHHHHHHHHHHhCCCCCcchhhhhHhhHHHHHHHHhhcCCcEEEEEeCCCC--ChhhHHHHH-hhCCC-CCCCceEE
Q 037018 97 NAQLNHILDDIIKSVMPPSRVNVIISEDYKLKTIILRDYLTNKKDFIVLDDVFD--DREIWNDLE-KFLPD-NQNGSRVL 172 (663)
Q Consensus 97 ~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~~l~~~L~~kr~LlVLDdv~~--~~~~~~~l~-~~~~~-~~~gskIi 172 (663)
+ ..++.+.+...+.... ...+++.+++- =+|++|||.. ....|.... ..+.. ...|-+||
T Consensus 71 ~--~~~f~~~~~~~~~~~~-------------~~~~~~~~~~~-DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li 134 (219)
T PF00308_consen 71 S--AEEFIREFADALRDGE-------------IEEFKDRLRSA-DLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLI 134 (219)
T ss_dssp E--HHHHHHHHHHHHHTTS-------------HHHHHHHHCTS-SEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEE
T ss_pred c--HHHHHHHHHHHHHccc-------------chhhhhhhhcC-CEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEE
Confidence 3 6777788877766422 34455666643 4668999987 233343332 32321 23477999
Q ss_pred EEEeCC
Q 037018 173 ILVTDP 178 (663)
Q Consensus 173 iT~r~~ 178 (663)
+|+...
T Consensus 135 ~ts~~~ 140 (219)
T PF00308_consen 135 LTSDRP 140 (219)
T ss_dssp EEESS-
T ss_pred EEeCCC
Confidence 998644
No 92
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.12 E-value=0.00047 Score=66.31 Aligned_cols=102 Identities=18% Similarity=0.125 Sum_probs=77.3
Q ss_pred cCCCcccEEEecCCcCcccCccCCCCCCcCeEeccCCCCccchhhhcccccccEeeccCCcccccch--hhhcCcCCcEE
Q 037018 369 KKFKHLRVLNLGSAILYQYPPGLENLFHLKYLKLNIPSLNCLPSLLCTLLNLQTLEMPASYIDHSPE--GIWMMQKLMHL 446 (663)
Q Consensus 369 ~~l~~Lr~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~--~l~~l~~L~~L 446 (663)
+.+.+.+.|++.||.+.++. ...+|+.|+.|.|+-|.|+++. .+..|++|+.|+|+.|.|..+.. .+.++++|+.|
T Consensus 16 sdl~~vkKLNcwg~~L~DIs-ic~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 16 SDLENVKKLNCWGCGLDDIS-ICEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred hHHHHhhhhcccCCCccHHH-HHHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 44667888999999987653 3458999999999999999885 67789999999999998877754 47899999999
Q ss_pred EccCCCCCCCCCC-----CcCCCCCCcEeeC
Q 037018 447 NFGSINLPAPPKN-----YSSSLKNLIFISS 472 (663)
Q Consensus 447 ~l~~~~~~~~~~~-----~l~~l~~L~~L~l 472 (663)
-+..|--.+.-+. .+.-+++|+.|+=
T Consensus 94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLDn 124 (388)
T KOG2123|consen 94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLDN 124 (388)
T ss_pred hhccCCcccccchhHHHHHHHHcccchhccC
Confidence 9984433333322 2445677777663
No 93
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=95.86 E-value=0.032 Score=58.15 Aligned_cols=138 Identities=12% Similarity=0.054 Sum_probs=81.0
Q ss_pred CccccccchhhcHHHHHHHHhcCC----CCceEEEEEec-chhhHHHHHhcCCCccccCCCCccccCCceeeccCCCcce
Q 037018 16 STSCSSKTVKVKVKAVLVWLFMLD----SMWLQFLTAVA-YKTAFVADIYNNNVDLSAMNPKLRVPKRFINKAFPVAFPV 90 (663)
Q Consensus 16 ~~~~~~~G~~~~~~~i~~~L~~~~----~~~~~vi~i~G-GKTtla~~v~~~~~~~~~~~~~~~~~~~F~~~~~~~~~~v 90 (663)
..+..++||+.+++.+.+++...- +..+.|-|--| |||.+...|+.+.. .-...|..+.- -
T Consensus 147 ~~p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~---------~~~~~~~~v~i-----n 212 (529)
T KOG2227|consen 147 APPGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLS---------KSSKSPVTVYI-----N 212 (529)
T ss_pred CCCCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhh---------hhcccceeEEE-----e
Confidence 344568999999999999986532 23466666666 99999999999661 12222221221 2
Q ss_pred EeCCCcchhHHHHHHHHHHHhCCCCCcchhhhhHhhHHHHHHHHhhcCC--cEEEEEeCCCC-ChhhHHHHHhhCCCC-C
Q 037018 91 DVNCACNAQLNHILDDIIKSVMPPSRVNVIISEDYKLKTIILRDYLTNK--KDFIVLDDVFD-DREIWNDLEKFLPDN-Q 166 (663)
Q Consensus 91 ~vs~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~~l~~~L~~k--r~LlVLDdv~~-~~~~~~~l~~~~~~~-~ 166 (663)
|.+ -.. ..++.+.|...+......... ..+. .+++.+...+. -+++|||.+.. ....-..+...|-|- -
T Consensus 213 c~s-l~~--~~aiF~kI~~~~~q~~~s~~~---~~~~-~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~l 285 (529)
T KOG2227|consen 213 CTS-LTE--ASAIFKKIFSSLLQDLVSPGT---GMQH-LEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKL 285 (529)
T ss_pred ecc-ccc--hHHHHHHHHHHHHHHhcCCch---hHHH-HHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccC
Confidence 222 022 456777777766221110001 1333 45566666554 58999999876 344445555555543 4
Q ss_pred CCceEEEE
Q 037018 167 NGSRVLIL 174 (663)
Q Consensus 167 ~gskIiiT 174 (663)
++||+|+.
T Consensus 286 p~sr~iLi 293 (529)
T KOG2227|consen 286 PNSRIILI 293 (529)
T ss_pred Ccceeeee
Confidence 57777765
No 94
>PRK08116 hypothetical protein; Validated
Probab=95.82 E-value=0.023 Score=56.92 Aligned_cols=100 Identities=18% Similarity=0.255 Sum_probs=54.5
Q ss_pred eEEEEEec-chhhHHHHHhcCCCccccCCCCccccCCceeeccCCCcceEeCCCcchhHHHHHHHHHHHhCCCCCcchhh
Q 037018 43 LQFLTAVA-YKTAFVADIYNNNVDLSAMNPKLRVPKRFINKAFPVAFPVDVNCACNAQLNHILDDIIKSVMPPSRVNVII 121 (663)
Q Consensus 43 ~~vi~i~G-GKTtla~~v~~~~~~~~~~~~~~~~~~~F~~~~~~~~~~v~vs~~~~~~~~~l~~~i~~~l~~~~~~~~~~ 121 (663)
+-+.|=.| |||.||.+|++ ++..+-...++ +. ..+++..+......... .
T Consensus 117 l~l~G~~GtGKThLa~aia~------------~l~~~~~~v~~-----~~--------~~~ll~~i~~~~~~~~~----~ 167 (268)
T PRK08116 117 LLLWGSVGTGKTYLAACIAN------------ELIEKGVPVIF-----VN--------FPQLLNRIKSTYKSSGK----E 167 (268)
T ss_pred EEEECCCCCCHHHHHHHHHH------------HHHHcCCeEEE-----EE--------HHHHHHHHHHHHhcccc----c
Confidence 33334444 99999999999 54444333445 32 55666666655443221 0
Q ss_pred hhHhhHHHHHHHHhhcCCcEEEEEeCCCC-ChhhHHH--HHhhCCC-CCCCceEEEEEeCC
Q 037018 122 SEDYKLKTIILRDYLTNKKDFIVLDDVFD-DREIWND--LEKFLPD-NQNGSRVLILVTDP 178 (663)
Q Consensus 122 ~~~~~l~~~~l~~~L~~kr~LlVLDdv~~-~~~~~~~--l~~~~~~-~~~gskIiiT~r~~ 178 (663)
. ...+.+.+.+-. ||||||+.. ...+|.. +..-+.. ..+|..+||||-..
T Consensus 168 ~------~~~~~~~l~~~d-lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~ 221 (268)
T PRK08116 168 D------ENEIIRSLVNAD-LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLS 221 (268)
T ss_pred c------HHHHHHHhcCCC-EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 0 223334455444 789999954 2334433 3332221 23567799987644
No 95
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=95.77 E-value=0.07 Score=54.73 Aligned_cols=112 Identities=14% Similarity=0.157 Sum_probs=66.2
Q ss_pred cCCccccccchhhcHHHHHHHHhcCCCCceEEEEEec----chhhHHHHHhcCCCccccCCCCccccCCceeeccCCCcc
Q 037018 14 SSSTSCSSKTVKVKVKAVLVWLFMLDSMWLQFLTAVA----YKTAFVADIYNNNVDLSAMNPKLRVPKRFINKAFPVAFP 89 (663)
Q Consensus 14 ~~~~~~~~~G~~~~~~~i~~~L~~~~~~~~~vi~i~G----GKTtla~~v~~~~~~~~~~~~~~~~~~~F~~~~~~~~~~ 89 (663)
-++++..++|-+....++++ .+ .+.-+=.|| ||||||+.|.. .....|...-=
T Consensus 25 e~vGQ~HLlg~~~~lrr~v~----~~--~l~SmIl~GPPG~GKTTlA~liA~------------~~~~~f~~~sA----- 81 (436)
T COG2256 25 EVVGQEHLLGEGKPLRRAVE----AG--HLHSMILWGPPGTGKTTLARLIAG------------TTNAAFEALSA----- 81 (436)
T ss_pred HhcChHhhhCCCchHHHHHh----cC--CCceeEEECCCCCCHHHHHHHHHH------------hhCCceEEecc-----
Confidence 34455555555444444333 22 355566788 99999999999 55666653222
Q ss_pred eEeCCCcchhHHHHHHHHHHHhCCCCCcchhhhhHhhHHHHHHHHhhcCCcEEEEEeCCCC-ChhhHHHHHhhCCCCCCC
Q 037018 90 VDVNCACNAQLNHILDDIIKSVMPPSRVNVIISEDYKLKTIILRDYLTNKKDFIVLDDVFD-DREIWNDLEKFLPDNQNG 168 (663)
Q Consensus 90 v~vs~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~~l~~~L~~kr~LlVLDdv~~-~~~~~~~l~~~~~~~~~g 168 (663)
| ..+ +.++.+.+ .. .+ +....++|.+|.+|.|.. +..+.+.+.+.. .+|
T Consensus 82 v----~~g--vkdlr~i~-e~------------------a~--~~~~~gr~tiLflDEIHRfnK~QQD~lLp~v---E~G 131 (436)
T COG2256 82 V----TSG--VKDLREII-EE------------------AR--KNRLLGRRTILFLDEIHRFNKAQQDALLPHV---ENG 131 (436)
T ss_pred c----ccc--HHHHHHHH-HH------------------HH--HHHhcCCceEEEEehhhhcChhhhhhhhhhh---cCC
Confidence 1 122 33332222 11 11 233458999999999998 777788777654 457
Q ss_pred ceEEEEEeCC
Q 037018 169 SRVLILVTDP 178 (663)
Q Consensus 169 skIiiT~r~~ 178 (663)
.-|+|-+.++
T Consensus 132 ~iilIGATTE 141 (436)
T COG2256 132 TIILIGATTE 141 (436)
T ss_pred eEEEEeccCC
Confidence 6777764443
No 96
>PRK10536 hypothetical protein; Provisional
Probab=95.76 E-value=0.049 Score=53.27 Aligned_cols=42 Identities=10% Similarity=-0.181 Sum_probs=31.4
Q ss_pred ccccchhhcHHHHHHHHhcCCCCceEEEEEec-chhhHHHHHhcC
Q 037018 19 CSSKTVKVKVKAVLVWLFMLDSMWLQFLTAVA-YKTAFVADIYNN 62 (663)
Q Consensus 19 ~~~~G~~~~~~~i~~~L~~~~~~~~~vi~i~G-GKTtla~~v~~~ 62 (663)
..+.++.......+.+|.... -+-++|-.| |||+||.++.-+
T Consensus 55 ~~i~p~n~~Q~~~l~al~~~~--lV~i~G~aGTGKT~La~a~a~~ 97 (262)
T PRK10536 55 SPILARNEAQAHYLKAIESKQ--LIFATGEAGCGKTWISAAKAAE 97 (262)
T ss_pred ccccCCCHHHHHHHHHHhcCC--eEEEECCCCCCHHHHHHHHHHH
Confidence 356788999999999887532 355555566 999999998774
No 97
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=95.73 E-value=0.24 Score=55.71 Aligned_cols=139 Identities=17% Similarity=0.118 Sum_probs=85.0
Q ss_pred cHHHHHHHHhcCCCCceEEEEEec----chhhHHHHHhcCCCccccCCCCccccCCceeeccCCCcceEeCCCcchhHHH
Q 037018 27 KVKAVLVWLFMLDSMWLQFLTAVA----YKTAFVADIYNNNVDLSAMNPKLRVPKRFINKAFPVAFPVDVNCACNAQLNH 102 (663)
Q Consensus 27 ~~~~i~~~L~~~~~~~~~vi~i~G----GKTtla~~v~~~~~~~~~~~~~~~~~~~F~~~~~~~~~~v~vs~~~~~~~~~ 102 (663)
...++.+.|..... .|.+-|.. |||||+-...... ..=..+.| .....+-+ +...
T Consensus 23 ~R~rL~~~L~~~~~--~RL~li~APAGfGKttl~aq~~~~~-------------~~~~~v~W-----lslde~dn-dp~r 81 (894)
T COG2909 23 VRPRLLDRLRRAND--YRLILISAPAGFGKTTLLAQWRELA-------------ADGAAVAW-----LSLDESDN-DPAR 81 (894)
T ss_pred ccHHHHHHHhcCCC--ceEEEEeCCCCCcHHHHHHHHHHhc-------------CcccceeE-----eecCCccC-CHHH
Confidence 46778888887763 56666654 9999999987522 11246789 77665432 3778
Q ss_pred HHHHHHHHhCC--CCCcchhhh---h-----HhhHHHHHHHHhhcC--CcEEEEEeCCCC--ChhhHHHHHhhCCCCCCC
Q 037018 103 ILDDIIKSVMP--PSRVNVIIS---E-----DYKLKTIILRDYLTN--KKDFIVLDDVFD--DREIWNDLEKFLPDNQNG 168 (663)
Q Consensus 103 l~~~i~~~l~~--~~~~~~~~~---~-----~~~l~~~~l~~~L~~--kr~LlVLDdv~~--~~~~~~~l~~~~~~~~~g 168 (663)
+..-++..+.. +..+..... + ...+ ...+...+.. +...+||||-.- ++..-+.+.-.+....++
T Consensus 82 F~~yLi~al~~~~p~~~~~a~~l~q~~~~~~l~~l-~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~ 160 (894)
T COG2909 82 FLSYLIAALQQATPTLGDEAQTLLQKHQYVSLESL-LSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPEN 160 (894)
T ss_pred HHHHHHHHHHHhCccccHHHHHHHHhcccccHHHH-HHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCC
Confidence 88888888873 222211110 0 2223 3444444443 689999999654 354445555455555668
Q ss_pred ceEEEEEeCCCCCceEecc
Q 037018 169 SRVLILVTDPFLLTSFELE 187 (663)
Q Consensus 169 skIiiT~r~~~~~~~~~l~ 187 (663)
=..|||||.+-...+-++.
T Consensus 161 l~lvv~SR~rP~l~la~lR 179 (894)
T COG2909 161 LTLVVTSRSRPQLGLARLR 179 (894)
T ss_pred eEEEEEeccCCCCccccee
Confidence 8899999987654333333
No 98
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=95.72 E-value=0.057 Score=53.88 Aligned_cols=115 Identities=12% Similarity=0.068 Sum_probs=71.2
Q ss_pred ccccchh---hcHHHHHHHHhcCCCCceEEEEEec----chhhHHHHHhcCCCccccCCCCccccCCceeeccCCCcceE
Q 037018 19 CSSKTVK---VKVKAVLVWLFMLDSMWLQFLTAVA----YKTAFVADIYNNNVDLSAMNPKLRVPKRFINKAFPVAFPVD 91 (663)
Q Consensus 19 ~~~~G~~---~~~~~i~~~L~~~~~~~~~vi~i~G----GKTtla~~v~~~~~~~~~~~~~~~~~~~F~~~~~~~~~~v~ 91 (663)
..++|.. +-.+++.++|......+..=+-||| |||+++++..+...+ ... .. ...+ .++. |.
T Consensus 34 ~rWIgY~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~--~~d--~~-~~~~-PVv~-----vq 102 (302)
T PF05621_consen 34 DRWIGYPRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPP--QSD--ED-AERI-PVVY-----VQ 102 (302)
T ss_pred CCeecCHHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCC--CCC--CC-Cccc-cEEE-----Ee
Confidence 4567763 3445556666665555566677788 999999999986621 111 11 1111 3334 56
Q ss_pred eCCCcchhHHHHHHHHHHHhCCCCCcchhhhhHhhHHHHHHHHhhcCCc-EEEEEeCCCC
Q 037018 92 VNCACNAQLNHILDDIIKSVMPPSRVNVIISEDYKLKTIILRDYLTNKK-DFIVLDDVFD 150 (663)
Q Consensus 92 vs~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~~l~~~L~~kr-~LlVLDdv~~ 150 (663)
....++ ..++...|+.+++.+.... +. ...+ .......++.-. =+||+|++.+
T Consensus 103 ~P~~p~--~~~~Y~~IL~~lgaP~~~~--~~-~~~~-~~~~~~llr~~~vrmLIIDE~H~ 156 (302)
T PF05621_consen 103 MPPEPD--ERRFYSAILEALGAPYRPR--DR-VAKL-EQQVLRLLRRLGVRMLIIDEFHN 156 (302)
T ss_pred cCCCCC--hHHHHHHHHHHhCcccCCC--CC-HHHH-HHHHHHHHHHcCCcEEEeechHH
Confidence 666777 9999999999999875421 11 2333 344445555533 3789999977
No 99
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=95.70 E-value=0.064 Score=55.93 Aligned_cols=41 Identities=15% Similarity=-0.100 Sum_probs=32.1
Q ss_pred ccccchhhcHHHHHHHHhcCCCCceEEEEEec----chhhHHHHHhcC
Q 037018 19 CSSKTVKVKVKAVLVWLFMLDSMWLQFLTAVA----YKTAFVADIYNN 62 (663)
Q Consensus 19 ~~~~G~~~~~~~i~~~L~~~~~~~~~vi~i~G----GKTtla~~v~~~ 62 (663)
..++|++..++.+.+++..... ..+-++| ||||+|+++.+.
T Consensus 15 ~~~~g~~~~~~~L~~~~~~~~~---~~lll~Gp~GtGKT~la~~~~~~ 59 (337)
T PRK12402 15 EDILGQDEVVERLSRAVDSPNL---PHLLVQGPPGSGKTAAVRALARE 59 (337)
T ss_pred HHhcCCHHHHHHHHHHHhCCCC---ceEEEECCCCCCHHHHHHHHHHH
Confidence 3688999999999998876542 2345666 999999999883
No 100
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=95.68 E-value=0.031 Score=55.41 Aligned_cols=102 Identities=10% Similarity=0.118 Sum_probs=56.7
Q ss_pred CceEEEEEec-chhhHHHHHhcCCCccccCCCCccccCCceeeccCCCcceEeCCCcchhHHHHHHHHHHHhCC------
Q 037018 41 MWLQFLTAVA-YKTAFVADIYNNNVDLSAMNPKLRVPKRFINKAFPVAFPVDVNCACNAQLNHILDDIIKSVMP------ 113 (663)
Q Consensus 41 ~~~~vi~i~G-GKTtla~~v~~~~~~~~~~~~~~~~~~~F~~~~~~~~~~v~vs~~~~~~~~~l~~~i~~~l~~------ 113 (663)
++..++|=.| ||||||+.+++ +++.+|+..+++ +-+.+... .+.++.+++...=..
T Consensus 70 Qr~~If~~~G~GKTtLa~~i~~------------~i~~~~~~~~V~----~~iGer~~-Ev~e~~~~~~~~~~~~~tvvv 132 (274)
T cd01133 70 GKIGLFGGAGVGKTVLIMELIN------------NIAKAHGGYSVF----AGVGERTR-EGNDLYHEMKESGVLSKTALV 132 (274)
T ss_pred CEEEEecCCCCChhHHHHHHHH------------HHHhcCCCEEEE----EEeccCcH-HHHHHHHHHHhcCCcceeEEE
Confidence 3555555555 99999999999 667677654441 55655443 155566666543111
Q ss_pred --CCCcchhhhh-HhhHHHHHHHHhh---cCCcEEEEEeCCCCChhhHHHHHh
Q 037018 114 --PSRVNVIISE-DYKLKTIILRDYL---TNKKDFIVLDDVFDDREIWNDLEK 160 (663)
Q Consensus 114 --~~~~~~~~~~-~~~l~~~~l~~~L---~~kr~LlVLDdv~~~~~~~~~l~~ 160 (663)
..+.+..... .-.. .-.+-+++ ++|.+|+|+||+-.-.+...++..
T Consensus 133 ~~t~d~~~~~r~~~~~~-a~~~AEyfr~~~g~~Vl~~~Dsltr~a~A~reis~ 184 (274)
T cd01133 133 YGQMNEPPGARARVALT-GLTMAEYFRDEEGQDVLLFIDNIFRFTQAGSEVSA 184 (274)
T ss_pred EECCCCCHHHHHHHHHH-HHHHHHHHHHhcCCeEEEEEeChhHHHHHHHHHHH
Confidence 1111111111 2222 33344555 389999999998763444455544
No 101
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=95.65 E-value=0.053 Score=61.78 Aligned_cols=40 Identities=13% Similarity=-0.166 Sum_probs=27.9
Q ss_pred ccccchhhcHH---HHHHHHhcCCCCceEEEEEec----chhhHHHHHhc
Q 037018 19 CSSKTVKVKVK---AVLVWLFMLDSMWLQFLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 19 ~~~~G~~~~~~---~i~~~L~~~~~~~~~vi~i~G----GKTtla~~v~~ 61 (663)
..++|.+..+. .+.+.+..+. ..-+-++| ||||+|+.+.+
T Consensus 28 dd~vGQe~ii~~~~~L~~~i~~~~---~~slLL~GPpGtGKTTLA~aIA~ 74 (725)
T PRK13341 28 EEFVGQDHILGEGRLLRRAIKADR---VGSLILYGPPGVGKTTLARIIAN 74 (725)
T ss_pred HHhcCcHHHhhhhHHHHHHHhcCC---CceEEEECCCCCCHHHHHHHHHH
Confidence 35889887774 4555555443 34455667 99999999999
No 102
>PRK06893 DNA replication initiation factor; Validated
Probab=95.61 E-value=0.013 Score=57.30 Aligned_cols=38 Identities=24% Similarity=0.487 Sum_probs=22.3
Q ss_pred EEEEEeCCCC--ChhhHHH-HHhhCCCC-CCCceEEEEEeCC
Q 037018 141 DFIVLDDVFD--DREIWND-LEKFLPDN-QNGSRVLILVTDP 178 (663)
Q Consensus 141 ~LlVLDdv~~--~~~~~~~-l~~~~~~~-~~gskIiiT~r~~ 178 (663)
-+|||||+|. ...+|+. +...+... ..|+.|||+|++.
T Consensus 93 dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~ 134 (229)
T PRK06893 93 DLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADC 134 (229)
T ss_pred CEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCC
Confidence 4899999997 2345653 33333322 3466776665544
No 103
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=95.52 E-value=0.014 Score=56.96 Aligned_cols=40 Identities=8% Similarity=-0.079 Sum_probs=27.5
Q ss_pred chhhcHHHHHHHHhcCCCCceEEEEEec-chhhHHHHHhcC
Q 037018 23 TVKVKVKAVLVWLFMLDSMWLQFLTAVA-YKTAFVADIYNN 62 (663)
Q Consensus 23 G~~~~~~~i~~~L~~~~~~~~~vi~i~G-GKTtla~~v~~~ 62 (663)
+.+..++.+.+++.......+-+.|=.| ||||+|+++++.
T Consensus 21 ~~~~~~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~ 61 (226)
T TIGR03420 21 GNAELLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAA 61 (226)
T ss_pred CcHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3566777888876544332455555555 999999999983
No 104
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=95.49 E-value=0.045 Score=55.07 Aligned_cols=94 Identities=18% Similarity=0.244 Sum_probs=59.4
Q ss_pred ceEEEEEec----chhhHHHHHhcCCCccccCCCCccccCCceeeccCCCcceEeCCCcchhHHHHHHHHHHHhCCCCCc
Q 037018 42 WLQFLTAVA----YKTAFVADIYNNNVDLSAMNPKLRVPKRFINKAFPVAFPVDVNCACNAQLNHILDDIIKSVMPPSRV 117 (663)
Q Consensus 42 ~~~vi~i~G----GKTtla~~v~~~~~~~~~~~~~~~~~~~F~~~~~~~~~~v~vs~~~~~~~~~l~~~i~~~l~~~~~~ 117 (663)
++.-+-.|| ||||||+.+.+.. +-.. ..| |+.|-... -..=.++|+++-
T Consensus 161 ~ipSmIlWGppG~GKTtlArlia~ts----------k~~S----yrf-----velSAt~a--~t~dvR~ife~a------ 213 (554)
T KOG2028|consen 161 RIPSMILWGPPGTGKTTLARLIASTS----------KKHS----YRF-----VELSATNA--KTNDVRDIFEQA------ 213 (554)
T ss_pred CCCceEEecCCCCchHHHHHHHHhhc----------CCCc----eEE-----EEEecccc--chHHHHHHHHHH------
Confidence 567788888 9999999999966 3333 334 66665433 222234444331
Q ss_pred chhhhhHhhHHHHHHHHhhcCCcEEEEEeCCCC-ChhhHHHHHhhCCCCCCCceEEEEEeCC
Q 037018 118 NVIISEDYKLKTIILRDYLTNKKDFIVLDDVFD-DREIWNDLEKFLPDNQNGSRVLILVTDP 178 (663)
Q Consensus 118 ~~~~~~~~~l~~~~l~~~L~~kr~LlVLDdv~~-~~~~~~~l~~~~~~~~~gskIiiT~r~~ 178 (663)
+.. ..+.++|..|.+|.|.. +..+.+.+. |.-.+|+-++|-..++
T Consensus 214 -----------q~~--~~l~krkTilFiDEiHRFNksQQD~fL---P~VE~G~I~lIGATTE 259 (554)
T KOG2028|consen 214 -----------QNE--KSLTKRKTILFIDEIHRFNKSQQDTFL---PHVENGDITLIGATTE 259 (554)
T ss_pred -----------HHH--HhhhcceeEEEeHHhhhhhhhhhhccc---ceeccCceEEEecccC
Confidence 111 45677899999999987 566666554 4445677777754433
No 105
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=95.49 E-value=0.064 Score=60.12 Aligned_cols=42 Identities=17% Similarity=-0.121 Sum_probs=31.8
Q ss_pred cccchhhcHHHHHHHHhcCCCCc-eEEEEEec-chhhHHHHHhc
Q 037018 20 SSKTVKVKVKAVLVWLFMLDSMW-LQFLTAVA-YKTAFVADIYN 61 (663)
Q Consensus 20 ~~~G~~~~~~~i~~~L~~~~~~~-~~vi~i~G-GKTtla~~v~~ 61 (663)
.++|.+.-++.+.+++..+.-.. +-+.|--| ||||+|+.+.+
T Consensus 17 EVIGQe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAK 60 (830)
T PRK07003 17 SLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAK 60 (830)
T ss_pred HHcCcHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 69999999999999988765322 23444445 99999998777
No 106
>PRK08118 topology modulation protein; Reviewed
Probab=95.43 E-value=0.0064 Score=56.19 Aligned_cols=33 Identities=6% Similarity=0.102 Sum_probs=23.8
Q ss_pred ceEEEEEec-chhhHHHHHhcCCCccccCCCCcccc-CCceeecc
Q 037018 42 WLQFLTAVA-YKTAFVADIYNNNVDLSAMNPKLRVP-KRFINKAF 84 (663)
Q Consensus 42 ~~~vi~i~G-GKTtla~~v~~~~~~~~~~~~~~~~~-~~F~~~~~ 84 (663)
++-|+|-.| ||||||+.+++.. .+. -+||...|
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l----------~~~~~~lD~l~~ 37 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKL----------NIPVHHLDALFW 37 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh----------CCCceecchhhc
Confidence 455566666 9999999999965 443 56777775
No 107
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=95.38 E-value=0.083 Score=57.57 Aligned_cols=43 Identities=14% Similarity=-0.127 Sum_probs=33.3
Q ss_pred cccchhhcHHHHHHHHhcCCC-CceEEEEEec-chhhHHHHHhcC
Q 037018 20 SSKTVKVKVKAVLVWLFMLDS-MWLQFLTAVA-YKTAFVADIYNN 62 (663)
Q Consensus 20 ~~~G~~~~~~~i~~~L~~~~~-~~~~vi~i~G-GKTtla~~v~~~ 62 (663)
.++|-+.-++.+.+.+..+.- +.+-+.|-.| ||||+|+.+.+.
T Consensus 22 dliGq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~ 66 (507)
T PRK06645 22 ELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKA 66 (507)
T ss_pred HhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 689999999988887766542 2455666666 999999999883
No 108
>PRK08727 hypothetical protein; Validated
Probab=95.36 E-value=0.053 Score=53.15 Aligned_cols=17 Identities=18% Similarity=0.149 Sum_probs=14.4
Q ss_pred EEEEec----chhhHHHHHhc
Q 037018 45 FLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 45 vi~i~G----GKTtla~~v~~ 61 (663)
.+.|+| |||+|++++++
T Consensus 43 ~l~l~G~~G~GKThL~~a~~~ 63 (233)
T PRK08727 43 WLYLSGPAGTGKTHLALALCA 63 (233)
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 366666 99999999999
No 109
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=95.34 E-value=0.16 Score=52.27 Aligned_cols=123 Identities=13% Similarity=0.073 Sum_probs=70.7
Q ss_pred cccchhhcHHHHHHHHhcCCCCceEEEEEec----chhhHHHHHhcCCCccccCCCCccccCCceeeccCCCcceE-eCC
Q 037018 20 SSKTVKVKVKAVLVWLFMLDSMWLQFLTAVA----YKTAFVADIYNNNVDLSAMNPKLRVPKRFINKAFPVAFPVD-VNC 94 (663)
Q Consensus 20 ~~~G~~~~~~~i~~~L~~~~~~~~~vi~i~G----GKTtla~~v~~~~~~~~~~~~~~~~~~~F~~~~~~~~~~v~-vs~ 94 (663)
.++|-+..++++.+++..+.- ...+-++| ||||+|+.+++... . ......|.|...| .. -+.
T Consensus 5 ~i~g~~~~~~~l~~~~~~~~~--~ha~Lf~G~~G~Gk~~la~~~a~~l~-----c-~~~~~~h~D~~~~-----~~~~~~ 71 (313)
T PRK05564 5 TIIGHENIKNRIKNSIIKNRF--SHAHIIVGEDGIGKSLLAKEIALKIL-----G-KSQQREYVDIIEF-----KPINKK 71 (313)
T ss_pred hccCcHHHHHHHHHHHHcCCC--CceEEeECCCCCCHHHHHHHHHHHHc-----C-CCCCCCCCCeEEe-----ccccCC
Confidence 578999999999999976543 23344455 99999998887210 0 0012345565444 32 122
Q ss_pred CcchhHHHHHHHHHHHhCCCCCcchhhhhHhhHHHHHHHHhhcCCcEEEEEeCCCC-ChhhHHHHHhhCCCCCCCceEEE
Q 037018 95 ACNAQLNHILDDIIKSVMPPSRVNVIISEDYKLKTIILRDYLTNKKDFIVLDDVFD-DREIWNDLEKFLPDNQNGSRVLI 173 (663)
Q Consensus 95 ~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~~l~~~L~~kr~LlVLDdv~~-~~~~~~~l~~~~~~~~~gskIii 173 (663)
... ..++ +++...+... -...++|++ |+||+.. ....|+.+...+..-.+++.+|+
T Consensus 72 ~i~--v~~i-r~~~~~~~~~-------------------p~~~~~kv~-iI~~ad~m~~~a~naLLK~LEepp~~t~~il 128 (313)
T PRK05564 72 SIG--VDDI-RNIIEEVNKK-------------------PYEGDKKVI-IIYNSEKMTEQAQNAFLKTIEEPPKGVFIIL 128 (313)
T ss_pred CCC--HHHH-HHHHHHHhcC-------------------cccCCceEE-EEechhhcCHHHHHHHHHHhcCCCCCeEEEE
Confidence 222 2221 1121211110 111245555 5555443 38889999999988778999998
Q ss_pred EEeCC
Q 037018 174 LVTDP 178 (663)
Q Consensus 174 T~r~~ 178 (663)
++.+.
T Consensus 129 ~~~~~ 133 (313)
T PRK05564 129 LCENL 133 (313)
T ss_pred EeCCh
Confidence 87544
No 110
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=95.33 E-value=0.097 Score=54.03 Aligned_cols=53 Identities=9% Similarity=-0.146 Sum_probs=36.3
Q ss_pred CccCccCCccccccchhhcHHHHHHHHhcCCCCceEE-EEEec-chhhHHHHHhc
Q 037018 9 KPLTHSSSTSCSSKTVKVKVKAVLVWLFMLDSMWLQF-LTAVA-YKTAFVADIYN 61 (663)
Q Consensus 9 ~~~~~~~~~~~~~~G~~~~~~~i~~~L~~~~~~~~~v-i~i~G-GKTtla~~v~~ 61 (663)
|-.-+.+..-..++|.++.++.+..++.....+..-. .|-.| ||||+|+++++
T Consensus 11 w~~kyrP~~~~~~~~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~ 65 (316)
T PHA02544 11 WEQKYRPSTIDECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCN 65 (316)
T ss_pred ceeccCCCcHHHhcCcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHH
Confidence 3333333444578999999999999998654322222 24444 99999999998
No 111
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.31 E-value=0.019 Score=62.63 Aligned_cols=134 Identities=13% Similarity=-0.034 Sum_probs=70.7
Q ss_pred cccchhhcHHHHHHHHhcCCCCceEEEEEec----chhhHHHHHhcCCCccccCCCCccccCCceeeccCCCcceEeCCC
Q 037018 20 SSKTVKVKVKAVLVWLFMLDSMWLQFLTAVA----YKTAFVADIYNNNVDLSAMNPKLRVPKRFINKAFPVAFPVDVNCA 95 (663)
Q Consensus 20 ~~~G~~~~~~~i~~~L~~~~~~~~~vi~i~G----GKTtla~~v~~~~~~~~~~~~~~~~~~~F~~~~~~~~~~v~vs~~ 95 (663)
.++|-+.-++.+.+++....- ...+-++| ||||+|+.+.+.. .-.+.+...+| .|.++.
T Consensus 15 dvvGq~~v~~~L~~~i~~~~l--~ha~Lf~GppGtGKTTlA~~lA~~l----------~c~~~~~~~cg-----~C~sc~ 77 (504)
T PRK14963 15 EVVGQEHVKEVLLAALRQGRL--GHAYLFSGPRGVGKTTTARLIAMAV----------NCSGEDPKPCG-----ECESCL 77 (504)
T ss_pred HhcChHHHHHHHHHHHHcCCC--CeEEEEECCCCCCHHHHHHHHHHHH----------hccCCCCCCCC-----cChhhH
Confidence 589999888889888887653 23345555 9999999998843 11222333444 333221
Q ss_pred cchhHHHHHHHHHHHhCCCCCcchhhhhHhhHHHHHHHH-hhcCCcEEEEEeCCCC-ChhhHHHHHhhCCCCCCCceEEE
Q 037018 96 CNAQLNHILDDIIKSVMPPSRVNVIISEDYKLKTIILRD-YLTNKKDFIVLDDVFD-DREIWNDLEKFLPDNQNGSRVLI 173 (663)
Q Consensus 96 ~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~~l~~-~L~~kr~LlVLDdv~~-~~~~~~~l~~~~~~~~~gskIii 173 (663)
.- ..-...-+..+...+. ..++. ..++ ...+.. -..+++-++|+|+++. ....++.+...+........+|+
T Consensus 78 ~i---~~~~h~dv~el~~~~~-~~vd~-iR~l-~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il 151 (504)
T PRK14963 78 AV---RRGAHPDVLEIDAASN-NSVED-VRDL-REKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFIL 151 (504)
T ss_pred HH---hcCCCCceEEeccccc-CCHHH-HHHH-HHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEE
Confidence 10 0000000001111111 00122 2223 222222 1335666889999987 46678888887776554555555
Q ss_pred EEe
Q 037018 174 LVT 176 (663)
Q Consensus 174 T~r 176 (663)
++.
T Consensus 152 ~t~ 154 (504)
T PRK14963 152 ATT 154 (504)
T ss_pred EcC
Confidence 543
No 112
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.05 E-value=0.051 Score=47.56 Aligned_cols=78 Identities=10% Similarity=0.189 Sum_probs=31.3
Q ss_pred cCCCcccEEEecCCcCcccC-ccCCCCCCcCeEeccCCCCccch-hhhcccccccEeeccCCcccccch-hhhcCcCCcE
Q 037018 369 KKFKHLRVLNLGSAILYQYP-PGLENLFHLKYLKLNIPSLNCLP-SLLCTLLNLQTLEMPASYIDHSPE-GIWMMQKLMH 445 (663)
Q Consensus 369 ~~l~~Lr~L~L~~~~l~~lp-~~~~~l~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~l~~lp~-~l~~l~~L~~ 445 (663)
..+++|+.+.+.. .+..++ ..|..+.+|+.+.+..+ +..++ ..+..+.+|+.+.+.. .+..++. .+..+++|+.
T Consensus 9 ~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~ 85 (129)
T PF13306_consen 9 YNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKN 85 (129)
T ss_dssp TT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECE
T ss_pred hCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccc
Confidence 5555666666553 344333 23555556666666553 44443 2344444556665544 2322322 2344555555
Q ss_pred EEcc
Q 037018 446 LNFG 449 (663)
Q Consensus 446 L~l~ 449 (663)
+.+.
T Consensus 86 i~~~ 89 (129)
T PF13306_consen 86 IDIP 89 (129)
T ss_dssp EEET
T ss_pred cccC
Confidence 5554
No 113
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.03 E-value=0.011 Score=34.00 Aligned_cols=18 Identities=39% Similarity=0.648 Sum_probs=8.9
Q ss_pred cCeEeccCCCCccchhhh
Q 037018 397 LKYLKLNIPSLNCLPSLL 414 (663)
Q Consensus 397 L~~L~L~~~~i~~lp~~i 414 (663)
|++|++++|.++.+|+.+
T Consensus 2 L~~Ldls~n~l~~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSF 19 (22)
T ss_dssp ESEEEETSSEESEEGTTT
T ss_pred ccEEECCCCcCEeCChhh
Confidence 455555555555554443
No 114
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=94.98 E-value=0.12 Score=54.49 Aligned_cols=44 Identities=5% Similarity=-0.130 Sum_probs=31.7
Q ss_pred ccccchhhcHHHHHHHHhcCCC----------CceEEEEEec----chhhHHHHHhcC
Q 037018 19 CSSKTVKVKVKAVLVWLFMLDS----------MWLQFLTAVA----YKTAFVADIYNN 62 (663)
Q Consensus 19 ~~~~G~~~~~~~i~~~L~~~~~----------~~~~vi~i~G----GKTtla~~v~~~ 62 (663)
..+.|++..++++.+.+...-. ...+-+-++| |||++|+++++.
T Consensus 122 ~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~ 179 (364)
T TIGR01242 122 EDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHE 179 (364)
T ss_pred HHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh
Confidence 4688999999999988742100 1123356666 999999999993
No 115
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=94.97 E-value=0.056 Score=55.51 Aligned_cols=44 Identities=14% Similarity=0.003 Sum_probs=32.6
Q ss_pred ccccchhhcHHHHHHHHhcCC--CCceEEEEEec----chhhHHHHHhcC
Q 037018 19 CSSKTVKVKVKAVLVWLFMLD--SMWLQFLTAVA----YKTAFVADIYNN 62 (663)
Q Consensus 19 ~~~~G~~~~~~~i~~~L~~~~--~~~~~vi~i~G----GKTtla~~v~~~ 62 (663)
..++|++..++++..++.... ......+-++| ||||||+++.+.
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~ 53 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANE 53 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 368999999999999886321 11234455666 999999999993
No 116
>PRK08181 transposase; Validated
Probab=94.91 E-value=0.096 Score=52.23 Aligned_cols=20 Identities=20% Similarity=0.032 Sum_probs=16.4
Q ss_pred ceEEEEEec-chhhHHHHHhc
Q 037018 42 WLQFLTAVA-YKTAFVADIYN 61 (663)
Q Consensus 42 ~~~vi~i~G-GKTtla~~v~~ 61 (663)
.+-++|=.| |||.||.++.+
T Consensus 108 nlll~Gp~GtGKTHLa~Aia~ 128 (269)
T PRK08181 108 NLLLFGPPGGGKSHLAAAIGL 128 (269)
T ss_pred eEEEEecCCCcHHHHHHHHHH
Confidence 466666666 99999999998
No 117
>PLN03025 replication factor C subunit; Provisional
Probab=94.84 E-value=0.13 Score=53.20 Aligned_cols=40 Identities=13% Similarity=-0.158 Sum_probs=30.7
Q ss_pred ccccchhhcHHHHHHHHhcCCCCceEEEEEec----chhhHHHHHhc
Q 037018 19 CSSKTVKVKVKAVLVWLFMLDSMWLQFLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 19 ~~~~G~~~~~~~i~~~L~~~~~~~~~vi~i~G----GKTtla~~v~~ 61 (663)
..++|-++.++.+.+++.....+. +-++| ||||+|+.+.+
T Consensus 13 ~~~~g~~~~~~~L~~~~~~~~~~~---lll~Gp~G~GKTtla~~la~ 56 (319)
T PLN03025 13 DDIVGNEDAVSRLQVIARDGNMPN---LILSGPPGTGKTTSILALAH 56 (319)
T ss_pred HHhcCcHHHHHHHHHHHhcCCCce---EEEECCCCCCHHHHHHHHHH
Confidence 368898888888888877654323 44666 99999999988
No 118
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.71 E-value=0.18 Score=57.88 Aligned_cols=43 Identities=12% Similarity=-0.094 Sum_probs=33.6
Q ss_pred cccchhhcHHHHHHHHhcCCCCc-eEEEEEec-chhhHHHHHhcC
Q 037018 20 SSKTVKVKVKAVLVWLFMLDSMW-LQFLTAVA-YKTAFVADIYNN 62 (663)
Q Consensus 20 ~~~G~~~~~~~i~~~L~~~~~~~-~~vi~i~G-GKTtla~~v~~~ 62 (663)
.++|-+.-++.+.+++..+.-.. +-+.|-.| ||||+|+.+.+.
T Consensus 17 dIIGQe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~ 61 (944)
T PRK14949 17 QMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKG 61 (944)
T ss_pred HhcCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 68999999999999987764423 24556666 999999999983
No 119
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.70 E-value=0.17 Score=56.18 Aligned_cols=42 Identities=12% Similarity=-0.161 Sum_probs=32.7
Q ss_pred cccchhhcHHHHHHHHhcCCCC-ceEEEEEec-chhhHHHHHhc
Q 037018 20 SSKTVKVKVKAVLVWLFMLDSM-WLQFLTAVA-YKTAFVADIYN 61 (663)
Q Consensus 20 ~~~G~~~~~~~i~~~L~~~~~~-~~~vi~i~G-GKTtla~~v~~ 61 (663)
.++|.+..++.+.+++..+.-. .+-+.|-.| ||||+|+.+.+
T Consensus 16 dVIGQe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK 59 (702)
T PRK14960 16 ELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAK 59 (702)
T ss_pred HhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 6999999999999999876431 234455555 99999999887
No 120
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.68 E-value=0.18 Score=53.00 Aligned_cols=43 Identities=14% Similarity=-0.106 Sum_probs=32.8
Q ss_pred cccchhhcHHHHHHHHhcCCCCc-eEEEEEec-chhhHHHHHhcC
Q 037018 20 SSKTVKVKVKAVLVWLFMLDSMW-LQFLTAVA-YKTAFVADIYNN 62 (663)
Q Consensus 20 ~~~G~~~~~~~i~~~L~~~~~~~-~~vi~i~G-GKTtla~~v~~~ 62 (663)
.++|-+.-++.+.+.+..+.-+. +-+.|-.| ||||+|+.+.+.
T Consensus 17 ~iiGq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~ 61 (363)
T PRK14961 17 DIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKS 61 (363)
T ss_pred hccChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHH
Confidence 68999999999999888754322 34555555 999999999883
No 121
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=94.62 E-value=0.13 Score=55.20 Aligned_cols=96 Identities=15% Similarity=0.207 Sum_probs=50.0
Q ss_pred EEEEEec----chhhHHHHHhcCCCccccCCCCccccCCceeeccCCCcceEeCCCcchhHHHHHHHHHHHhCCCCCcch
Q 037018 44 QFLTAVA----YKTAFVADIYNNNVDLSAMNPKLRVPKRFINKAFPVAFPVDVNCACNAQLNHILDDIIKSVMPPSRVNV 119 (663)
Q Consensus 44 ~vi~i~G----GKTtla~~v~~~~~~~~~~~~~~~~~~~F~~~~~~~~~~v~vs~~~~~~~~~l~~~i~~~l~~~~~~~~ 119 (663)
..+-|+| |||+||+++++ ++..+...... +.+ + ..++...+...+....
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~------------~l~~~~~~~~v-----~yi----~--~~~~~~~~~~~~~~~~---- 189 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGN------------EILENNPNAKV-----VYV----S--SEKFTNDFVNALRNNK---- 189 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHH------------HHHHhCCCCcE-----EEE----E--HHHHHHHHHHHHHcCC----
Confidence 3455566 99999999999 54444322111 223 2 4455556666554321
Q ss_pred hhhhHhhHHHHHHHHhhcCCcEEEEEeCCCC--Ch-hhHHHHHhhCCC-CCCCceEEEEEe
Q 037018 120 IISEDYKLKTIILRDYLTNKKDFIVLDDVFD--DR-EIWNDLEKFLPD-NQNGSRVLILVT 176 (663)
Q Consensus 120 ~~~~~~~l~~~~l~~~L~~kr~LlVLDdv~~--~~-~~~~~l~~~~~~-~~~gskIiiT~r 176 (663)
...+.+.+++ .-+|||||+.. .. ...+.+...+.. ...|..||+|+.
T Consensus 190 ---------~~~~~~~~~~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~ 240 (405)
T TIGR00362 190 ---------MEEFKEKYRS-VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSD 240 (405)
T ss_pred ---------HHHHHHHHHh-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecC
Confidence 1222333333 33788999975 12 222334433331 123567888755
No 122
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.58 E-value=0.21 Score=55.32 Aligned_cols=42 Identities=14% Similarity=-0.066 Sum_probs=33.0
Q ss_pred cccchhhcHHHHHHHHhcCCCCc-eEEEEEec-chhhHHHHHhc
Q 037018 20 SSKTVKVKVKAVLVWLFMLDSMW-LQFLTAVA-YKTAFVADIYN 61 (663)
Q Consensus 20 ~~~G~~~~~~~i~~~L~~~~~~~-~~vi~i~G-GKTtla~~v~~ 61 (663)
.+||-+.-++.+.+.+..+.-.. +-+.|-.| ||||+|+.+.+
T Consensus 17 dVIGQe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAk 60 (700)
T PRK12323 17 TLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAK 60 (700)
T ss_pred HHcCcHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHH
Confidence 69999999999999998765422 34455556 99999999877
No 123
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=94.35 E-value=0.14 Score=55.59 Aligned_cols=97 Identities=13% Similarity=0.178 Sum_probs=51.0
Q ss_pred EEEEEec----chhhHHHHHhcCCCccccCCCCccccCCceeeccCCCcceEeCCCcchhHHHHHHHHHHHhCCCCCcch
Q 037018 44 QFLTAVA----YKTAFVADIYNNNVDLSAMNPKLRVPKRFINKAFPVAFPVDVNCACNAQLNHILDDIIKSVMPPSRVNV 119 (663)
Q Consensus 44 ~vi~i~G----GKTtla~~v~~~~~~~~~~~~~~~~~~~F~~~~~~~~~~v~vs~~~~~~~~~l~~~i~~~l~~~~~~~~ 119 (663)
.-+-|+| |||+||+++.+ ++..++..... +.++ ...+..++...+....
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~------------~~~~~~~~~~v-----~yi~------~~~~~~~~~~~~~~~~---- 201 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGN------------YILEKNPNAKV-----VYVT------SEKFTNDFVNALRNNT---- 201 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHH------------HHHHhCCCCeE-----EEEE------HHHHHHHHHHHHHcCc----
Confidence 3355555 99999999999 55554422111 2222 4455556655554221
Q ss_pred hhhhHhhHHHHHHHHhhcCCcEEEEEeCCCC---ChhhHHHHHhhCCC-CCCCceEEEEEeC
Q 037018 120 IISEDYKLKTIILRDYLTNKKDFIVLDDVFD---DREIWNDLEKFLPD-NQNGSRVLILVTD 177 (663)
Q Consensus 120 ~~~~~~~l~~~~l~~~L~~kr~LlVLDdv~~---~~~~~~~l~~~~~~-~~~gskIiiT~r~ 177 (663)
...+.+.++ +--+||||||.. +....+.+...+.. ...|..||+|+..
T Consensus 202 ---------~~~~~~~~~-~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~ 253 (450)
T PRK00149 202 ---------MEEFKEKYR-SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDR 253 (450)
T ss_pred ---------HHHHHHHHh-cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCC
Confidence 222334444 344789999965 12222344443321 1235568887653
No 124
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=94.34 E-value=0.27 Score=55.04 Aligned_cols=42 Identities=14% Similarity=-0.169 Sum_probs=33.2
Q ss_pred cccchhhcHHHHHHHHhcCCCC-ceEEEEEec-chhhHHHHHhc
Q 037018 20 SSKTVKVKVKAVLVWLFMLDSM-WLQFLTAVA-YKTAFVADIYN 61 (663)
Q Consensus 20 ~~~G~~~~~~~i~~~L~~~~~~-~~~vi~i~G-GKTtla~~v~~ 61 (663)
.++|.+.-++.+.+++....-. .+-+.|--| ||||+|+.+.+
T Consensus 17 dIIGQe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk 60 (709)
T PRK08691 17 DLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAK 60 (709)
T ss_pred HHcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHH
Confidence 6999999999999999876531 245555556 99999999877
No 125
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.32 E-value=0.28 Score=53.99 Aligned_cols=42 Identities=10% Similarity=-0.059 Sum_probs=31.7
Q ss_pred cccchhhcHHHHHHHHhcCCCCc-eEEEEEec-chhhHHHHHhc
Q 037018 20 SSKTVKVKVKAVLVWLFMLDSMW-LQFLTAVA-YKTAFVADIYN 61 (663)
Q Consensus 20 ~~~G~~~~~~~i~~~L~~~~~~~-~~vi~i~G-GKTtla~~v~~ 61 (663)
.++|-+.-++.+.+.+..+.... +-+.|-.| ||||+|+.+.+
T Consensus 17 diiGq~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk 60 (546)
T PRK14957 17 EVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAK 60 (546)
T ss_pred HhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 68899999999999887654322 33444455 99999999987
No 126
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.31 E-value=0.097 Score=45.74 Aligned_cols=57 Identities=11% Similarity=0.223 Sum_probs=23.4
Q ss_pred CCCCCCcCeEeccCCCCccch-hhhcccccccEeeccCCcccccchh-hhcCcCCcEEEcc
Q 037018 391 LENLFHLKYLKLNIPSLNCLP-SLLCTLLNLQTLEMPASYIDHSPEG-IWMMQKLMHLNFG 449 (663)
Q Consensus 391 ~~~l~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~l~~lp~~-l~~l~~L~~L~l~ 449 (663)
|.++.+|+.+.+.. .+..++ ..+..+.+|+.+.+..+ +..++.. +..+++|+.+.+.
T Consensus 8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~ 66 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFP 66 (129)
T ss_dssp TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEET
T ss_pred HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeeccccccccccc
Confidence 55556666666653 344443 33445556666666553 3333322 4444455555554
No 127
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=94.15 E-value=0.36 Score=49.96 Aligned_cols=39 Identities=18% Similarity=-0.019 Sum_probs=29.1
Q ss_pred hhcHHHHHHHHhcCCCCceEEEEEec----chhhHHHHHhcCC
Q 037018 25 KVKVKAVLVWLFMLDSMWLQFLTAVA----YKTAFVADIYNNN 63 (663)
Q Consensus 25 ~~~~~~i~~~L~~~~~~~~~vi~i~G----GKTtla~~v~~~~ 63 (663)
+.-.+.+.+.+...+.++..+|||.| ||||+.+.+.+..
T Consensus 2 ~~~a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~~L 44 (325)
T PF07693_consen 2 KPYAKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKEEL 44 (325)
T ss_pred hHHHHHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34456777888776433677888877 9999999999843
No 128
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=94.03 E-value=0.3 Score=51.93 Aligned_cols=38 Identities=32% Similarity=0.476 Sum_probs=33.1
Q ss_pred CcEEEEEeCCCCChhhHHHHHhhCCCCCCCceEEEEEeCC
Q 037018 139 KKDFIVLDDVFDDREIWNDLEKFLPDNQNGSRVLILVTDP 178 (663)
Q Consensus 139 kr~LlVLDdv~~~~~~~~~l~~~~~~~~~gskIiiT~r~~ 178 (663)
++..++||.|-. ..+|+.....+.+.++. +|+||+.+.
T Consensus 94 ~~~yifLDEIq~-v~~W~~~lk~l~d~~~~-~v~itgsss 131 (398)
T COG1373 94 EKSYIFLDEIQN-VPDWERALKYLYDRGNL-DVLITGSSS 131 (398)
T ss_pred CCceEEEecccC-chhHHHHHHHHHccccc-eEEEECCch
Confidence 889999999999 99999999989887777 999995544
No 129
>PRK09183 transposase/IS protein; Provisional
Probab=93.89 E-value=0.18 Score=50.30 Aligned_cols=20 Identities=15% Similarity=0.106 Sum_probs=14.5
Q ss_pred eEEEEEec-chhhHHHHHhcC
Q 037018 43 LQFLTAVA-YKTAFVADIYNN 62 (663)
Q Consensus 43 ~~vi~i~G-GKTtla~~v~~~ 62 (663)
+-++|=.| |||+||.++.+.
T Consensus 105 v~l~Gp~GtGKThLa~al~~~ 125 (259)
T PRK09183 105 IVLLGPSGVGKTHLAIALGYE 125 (259)
T ss_pred EEEEeCCCCCHHHHHHHHHHH
Confidence 44444444 999999999873
No 130
>PRK08939 primosomal protein DnaI; Reviewed
Probab=93.86 E-value=0.2 Score=51.17 Aligned_cols=115 Identities=15% Similarity=0.161 Sum_probs=59.8
Q ss_pred chhhcHHHHHHHHhcCC----CCceEEEEEec-chhhHHHHHhcCCCccccCCCCccccCCceeeccCCCcceEeCCCcc
Q 037018 23 TVKVKVKAVLVWLFMLD----SMWLQFLTAVA-YKTAFVADIYNNNVDLSAMNPKLRVPKRFINKAFPVAFPVDVNCACN 97 (663)
Q Consensus 23 G~~~~~~~i~~~L~~~~----~~~~~vi~i~G-GKTtla~~v~~~~~~~~~~~~~~~~~~~F~~~~~~~~~~v~vs~~~~ 97 (663)
++....+....++..-. ..++-+.|=+| |||.||.++.+. +..+=..+.+ ++
T Consensus 135 ~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~------------l~~~g~~v~~-----~~------ 191 (306)
T PRK08939 135 DRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANE------------LAKKGVSSTL-----LH------ 191 (306)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHH------------HHHcCCCEEE-----EE------
Confidence 34344444455554311 12344555555 999999999994 3333233445 43
Q ss_pred hhHHHHHHHHHHHhCCCCCcchhhhhHhhHHHHHHHHhhcCCcEEEEEeCCCC-ChhhHHH--HHhhC-CCC-CCCceEE
Q 037018 98 AQLNHILDDIIKSVMPPSRVNVIISEDYKLKTIILRDYLTNKKDFIVLDDVFD-DREIWND--LEKFL-PDN-QNGSRVL 172 (663)
Q Consensus 98 ~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~~l~~~L~~kr~LlVLDdv~~-~~~~~~~--l~~~~-~~~-~~gskIi 172 (663)
...+..++-....... . .. ..+.++ +-=||||||+.. ....|.. +...+ ... .++-.+|
T Consensus 192 --~~~l~~~lk~~~~~~~-----------~-~~-~l~~l~-~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti 255 (306)
T PRK08939 192 --FPEFIRELKNSISDGS-----------V-KE-KIDAVK-EAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTF 255 (306)
T ss_pred --HHHHHHHHHHHHhcCc-----------H-HH-HHHHhc-CCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEE
Confidence 4455556655543221 1 11 122333 445789999986 3455643 44433 222 2455677
Q ss_pred EEEe
Q 037018 173 ILVT 176 (663)
Q Consensus 173 iT~r 176 (663)
+||-
T Consensus 256 ~TSN 259 (306)
T PRK08939 256 FTSN 259 (306)
T ss_pred EECC
Confidence 7765
No 131
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.84 E-value=0.0089 Score=55.26 Aligned_cols=87 Identities=18% Similarity=0.242 Sum_probs=62.4
Q ss_pred CceEEEEecccCCCCChhhhcCCCCCcEEEeecCCCCC-ceeeecCCCCCCcccEEEccCCCCccccc-cccccccccce
Q 037018 542 CLTQLSLSNTQLMEDPMPALEKLPHLEVLKLKQNSYSE-RKLACVGSGSFPQLKILHLKSMLWLEEWT-MGAGAMPKLES 619 (663)
Q Consensus 542 ~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~-~~~~~~~~~~~~~L~~L~L~~~~~l~~l~-~~~~~l~~L~~ 619 (663)
.++.++-+++.+.......+.+++.++.|.+.+|...+ ..+... .+.+++|+.|+|++|+.+++-. .++..+++|+.
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l-~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~ 180 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERL-GGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRR 180 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHh-cccccchheeeccCCCeechhHHHHHHHhhhhHH
Confidence 46777777777777777788888888888888765443 333333 3467889999999888888443 45778888888
Q ss_pred EEeecCCCCC
Q 037018 620 LIVNPCAYLR 629 (663)
Q Consensus 620 L~l~~c~~l~ 629 (663)
|.+.+-+.+.
T Consensus 181 L~l~~l~~v~ 190 (221)
T KOG3864|consen 181 LHLYDLPYVA 190 (221)
T ss_pred HHhcCchhhh
Confidence 8888765443
No 132
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.83 E-value=0.19 Score=53.91 Aligned_cols=43 Identities=12% Similarity=-0.088 Sum_probs=32.7
Q ss_pred cccchhhcHHHHHHHHhcCCCC-ceEEEEEec-chhhHHHHHhcC
Q 037018 20 SSKTVKVKVKAVLVWLFMLDSM-WLQFLTAVA-YKTAFVADIYNN 62 (663)
Q Consensus 20 ~~~G~~~~~~~i~~~L~~~~~~-~~~vi~i~G-GKTtla~~v~~~ 62 (663)
.++|-+.-+..+..++....-. .+-+.|=.| ||||+|+.+.+.
T Consensus 19 dvVGQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~ 63 (484)
T PRK14956 19 DVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKR 63 (484)
T ss_pred HHhChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 6899999999999988876531 234455555 999999999883
No 133
>PRK06526 transposase; Provisional
Probab=93.80 E-value=0.11 Score=51.40 Aligned_cols=21 Identities=19% Similarity=0.069 Sum_probs=16.2
Q ss_pred ceEEEEEec-chhhHHHHHhcC
Q 037018 42 WLQFLTAVA-YKTAFVADIYNN 62 (663)
Q Consensus 42 ~~~vi~i~G-GKTtla~~v~~~ 62 (663)
.+-++|=.| |||+||.++.+.
T Consensus 100 nlll~Gp~GtGKThLa~al~~~ 121 (254)
T PRK06526 100 NVVFLGPPGTGKTHLAIGLGIR 121 (254)
T ss_pred eEEEEeCCCCchHHHHHHHHHH
Confidence 455555566 999999999883
No 134
>PRK12608 transcription termination factor Rho; Provisional
Probab=93.80 E-value=0.19 Score=52.08 Aligned_cols=105 Identities=11% Similarity=-0.005 Sum_probs=58.6
Q ss_pred cHHHHHHHHhcCCC-CceEEEEEec-chhhHHHHHhcCCCccccCCCCccccCCc-ee-eccCCCcceEeCCCcchhHHH
Q 037018 27 KVKAVLVWLFMLDS-MWLQFLTAVA-YKTAFVADIYNNNVDLSAMNPKLRVPKRF-IN-KAFPVAFPVDVNCACNAQLNH 102 (663)
Q Consensus 27 ~~~~i~~~L~~~~~-~~~~vi~i~G-GKTtla~~v~~~~~~~~~~~~~~~~~~~F-~~-~~~~~~~~v~vs~~~~~~~~~ 102 (663)
...+++..+.--.. ++..++|=.| |||||++.+.+ .+...- +. ++| +.+.+... .+.+
T Consensus 119 ~~~RvID~l~PiGkGQR~LIvG~pGtGKTTLl~~la~------------~i~~~~~dv~~vv-----~lIgER~~-EV~d 180 (380)
T PRK12608 119 LSMRVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIAA------------AVAANHPEVHLMV-----LLIDERPE-EVTD 180 (380)
T ss_pred hhHhhhhheeecCCCceEEEECCCCCCHHHHHHHHHH------------HHHhcCCCceEEE-----EEecCCCC-CHHH
Confidence 34456776664332 2443343344 99999999988 444332 33 356 55655433 2778
Q ss_pred HHHHHHHHhCCCCCc-chhhhh-HhhHHHHHHHHhh--cCCcEEEEEeCCCC
Q 037018 103 ILDDIIKSVMPPSRV-NVIISE-DYKLKTIILRDYL--TNKKDFIVLDDVFD 150 (663)
Q Consensus 103 l~~~i~~~l~~~~~~-~~~~~~-~~~l~~~~l~~~L--~~kr~LlVLDdv~~ 150 (663)
+.+.+...+..+... +..... .... ...+-+++ .+|.++||+|++-.
T Consensus 181 f~~~i~~~Vvast~de~~~~~~~v~~~-~~~~Ae~f~~~GkdVVLvlDsltr 231 (380)
T PRK12608 181 MRRSVKGEVYASTFDRPPDEHIRVAEL-VLERAKRLVEQGKDVVILLDSLTR 231 (380)
T ss_pred HHHHHhhhEEeecCCCCHHHHHHHHHH-HHHHHHHHHHcCCCEEEEEeCcHH
Confidence 888888877654311 111111 1211 12222222 57999999999865
No 135
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=93.79 E-value=0.24 Score=53.39 Aligned_cols=96 Identities=20% Similarity=0.251 Sum_probs=51.6
Q ss_pred eEEEEEec-chhhHHHHHhcCCCccccCCCCccccCCc-e-eeccCCCcceEeCCCcchhHHHHHHHHHHHhCCCCCcch
Q 037018 43 LQFLTAVA-YKTAFVADIYNNNVDLSAMNPKLRVPKRF-I-NKAFPVAFPVDVNCACNAQLNHILDDIIKSVMPPSRVNV 119 (663)
Q Consensus 43 ~~vi~i~G-GKTtla~~v~~~~~~~~~~~~~~~~~~~F-~-~~~~~~~~~v~vs~~~~~~~~~l~~~i~~~l~~~~~~~~ 119 (663)
+-+.|=.| |||+||+++.+ ++.... . ..+| ++ ..++..++...+....
T Consensus 133 l~lyG~~G~GKTHLl~ai~~------------~l~~~~~~~~v~y-----i~--------~~~f~~~~~~~~~~~~---- 183 (440)
T PRK14088 133 LFIYGGVGLGKTHLLQSIGN------------YVVQNEPDLRVMY-----IT--------SEKFLNDLVDSMKEGK---- 183 (440)
T ss_pred EEEEcCCCCcHHHHHHHHHH------------HHHHhCCCCeEEE-----EE--------HHHHHHHHHHHHhccc----
Confidence 34444444 99999999999 544433 2 2334 32 4556666666654321
Q ss_pred hhhhHhhHHHHHHHHhhcCCcEEEEEeCCCC--ChhhH-HHHHhhCCC-CCCCceEEEEEe
Q 037018 120 IISEDYKLKTIILRDYLTNKKDFIVLDDVFD--DREIW-NDLEKFLPD-NQNGSRVLILVT 176 (663)
Q Consensus 120 ~~~~~~~l~~~~l~~~L~~kr~LlVLDdv~~--~~~~~-~~l~~~~~~-~~~gskIiiT~r 176 (663)
...+++..+.+.-+|++||+.. +...+ +.+...+.. ...|..||+|+.
T Consensus 184 ---------~~~f~~~~~~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd 235 (440)
T PRK14088 184 ---------LNEFREKYRKKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSD 235 (440)
T ss_pred ---------HHHHHHHHHhcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECC
Confidence 1223334444556889999975 12212 233333321 123557888764
No 136
>PRK12377 putative replication protein; Provisional
Probab=93.77 E-value=0.23 Score=48.94 Aligned_cols=70 Identities=20% Similarity=0.142 Sum_probs=39.3
Q ss_pred eEEEEEec-chhhHHHHHhcCCCccccCCCCccccCCceeeccCCCcceEeCCCcchhHHHHHHHHHHHhCCCCCcchhh
Q 037018 43 LQFLTAVA-YKTAFVADIYNNNVDLSAMNPKLRVPKRFINKAFPVAFPVDVNCACNAQLNHILDDIIKSVMPPSRVNVII 121 (663)
Q Consensus 43 ~~vi~i~G-GKTtla~~v~~~~~~~~~~~~~~~~~~~F~~~~~~~~~~v~vs~~~~~~~~~l~~~i~~~l~~~~~~~~~~ 121 (663)
+-+.|-.| |||+||.++.+ .+......+++ ++ ..++...|-........
T Consensus 104 l~l~G~~GtGKThLa~AIa~------------~l~~~g~~v~~-----i~--------~~~l~~~l~~~~~~~~~----- 153 (248)
T PRK12377 104 FVFSGKPGTGKNHLAAAIGN------------RLLAKGRSVIV-----VT--------VPDVMSRLHESYDNGQS----- 153 (248)
T ss_pred EEEECCCCCCHHHHHHHHHH------------HHHHcCCCeEE-----EE--------HHHHHHHHHHHHhccch-----
Confidence 44444445 99999999999 44444444455 43 44555555444322111
Q ss_pred hhHhhHHHHHHHHhhcCCcEEEEEeCCCC
Q 037018 122 SEDYKLKTIILRDYLTNKKDFIVLDDVFD 150 (663)
Q Consensus 122 ~~~~~l~~~~l~~~L~~kr~LlVLDdv~~ 150 (663)
...+.+.+ .+--||||||+..
T Consensus 154 -------~~~~l~~l-~~~dLLiIDDlg~ 174 (248)
T PRK12377 154 -------GEKFLQEL-CKVDLLVLDEIGI 174 (248)
T ss_pred -------HHHHHHHh-cCCCEEEEcCCCC
Confidence 11222333 3556889999955
No 137
>PRK04195 replication factor C large subunit; Provisional
Probab=93.68 E-value=0.25 Score=54.24 Aligned_cols=45 Identities=11% Similarity=-0.014 Sum_probs=34.3
Q ss_pred cccccchhhcHHHHHHHHhcCCC-CceEEEEEec----chhhHHHHHhcC
Q 037018 18 SCSSKTVKVKVKAVLVWLFMLDS-MWLQFLTAVA----YKTAFVADIYNN 62 (663)
Q Consensus 18 ~~~~~G~~~~~~~i~~~L~~~~~-~~~~vi~i~G----GKTtla~~v~~~ 62 (663)
-..++|.+..++++.+|+..... ...+.+-|+| ||||+|+++.++
T Consensus 13 l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~e 62 (482)
T PRK04195 13 LSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALAND 62 (482)
T ss_pred HHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 34799999999999999975321 1245566666 999999999993
No 138
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.48 E-value=0.5 Score=52.18 Aligned_cols=42 Identities=14% Similarity=-0.069 Sum_probs=32.6
Q ss_pred cccchhhcHHHHHHHHhcCCCCc-eEEEEEec-chhhHHHHHhc
Q 037018 20 SSKTVKVKVKAVLVWLFMLDSMW-LQFLTAVA-YKTAFVADIYN 61 (663)
Q Consensus 20 ~~~G~~~~~~~i~~~L~~~~~~~-~~vi~i~G-GKTtla~~v~~ 61 (663)
.++|-+.-++.+.+++..+.-+. +-+.|-.| ||||+|+.+.+
T Consensus 17 divGq~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk 60 (527)
T PRK14969 17 ELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAK 60 (527)
T ss_pred HhcCcHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 68999999999999988765322 34555566 99999999877
No 139
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=93.46 E-value=0.041 Score=31.54 Aligned_cols=22 Identities=32% Similarity=0.492 Sum_probs=18.2
Q ss_pred cccEEEecCCcCcccCccCCCC
Q 037018 373 HLRVLNLGSAILYQYPPGLENL 394 (663)
Q Consensus 373 ~Lr~L~L~~~~l~~lp~~~~~l 394 (663)
+|++|++++|.++.+|..|++|
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSNL 22 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT-
T ss_pred CccEEECCCCcCEeCChhhcCC
Confidence 5899999999999888877653
No 140
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=93.45 E-value=0.096 Score=60.52 Aligned_cols=42 Identities=10% Similarity=-0.091 Sum_probs=35.8
Q ss_pred cccchhhcHHHHHHHHhcCCCCceEEEEEec-chhhHHHHHhc
Q 037018 20 SSKTVKVKVKAVLVWLFMLDSMWLQFLTAVA-YKTAFVADIYN 61 (663)
Q Consensus 20 ~~~G~~~~~~~i~~~L~~~~~~~~~vi~i~G-GKTtla~~v~~ 61 (663)
.++||+.+++++++.|.......+-++|-.| |||++|+.+.+
T Consensus 183 ~~igr~~ei~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~ 225 (731)
T TIGR02639 183 PLIGREDELERTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLAL 225 (731)
T ss_pred cccCcHHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999876554667777777 99999999988
No 141
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.44 E-value=0.41 Score=53.47 Aligned_cols=42 Identities=14% Similarity=-0.083 Sum_probs=31.5
Q ss_pred cccchhhcHHHHHHHHhcCCCCc-eEEEEEec-chhhHHHHHhc
Q 037018 20 SSKTVKVKVKAVLVWLFMLDSMW-LQFLTAVA-YKTAFVADIYN 61 (663)
Q Consensus 20 ~~~G~~~~~~~i~~~L~~~~~~~-~~vi~i~G-GKTtla~~v~~ 61 (663)
.++|-+.-++.+.+++..+.-.. +-+.|--| ||||+|+.+.+
T Consensus 17 dviGQe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk 60 (618)
T PRK14951 17 EMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAK 60 (618)
T ss_pred HhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 58999988899999888765422 34445555 99999999855
No 142
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=93.35 E-value=0.34 Score=56.98 Aligned_cols=43 Identities=12% Similarity=-0.113 Sum_probs=32.6
Q ss_pred ccccchhhcHHHHHHHHhcC------CCCceEEEEEec----chhhHHHHHhc
Q 037018 19 CSSKTVKVKVKAVLVWLFML------DSMWLQFLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 19 ~~~~G~~~~~~~i~~~L~~~------~~~~~~vi~i~G----GKTtla~~v~~ 61 (663)
..++|.+..++.+...+... +.....++-+.| |||++|+.+..
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~ 617 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAE 617 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHH
Confidence 35889999999999988652 111345566777 99999999988
No 143
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=93.32 E-value=0.34 Score=42.48 Aligned_cols=19 Identities=16% Similarity=0.125 Sum_probs=15.0
Q ss_pred EEEEec----chhhHHHHHhcCC
Q 037018 45 FLTAVA----YKTAFVADIYNNN 63 (663)
Q Consensus 45 vi~i~G----GKTtla~~v~~~~ 63 (663)
.+.|+| ||||+|+.+....
T Consensus 4 ~~~l~G~~G~GKTtl~~~l~~~~ 26 (148)
T smart00382 4 VILIVGPPGSGKTTLARALAREL 26 (148)
T ss_pred EEEEECCCCCcHHHHHHHHHhcc
Confidence 455555 9999999999944
No 144
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=93.23 E-value=0.2 Score=54.23 Aligned_cols=100 Identities=10% Similarity=0.104 Sum_probs=54.2
Q ss_pred ceEEEEEec-chhhHHHHHhcCCCccccCCCCccccCCceeeccCCCcceEeCCCcchhHHHHHHHHHHHhCCCCCcchh
Q 037018 42 WLQFLTAVA-YKTAFVADIYNNNVDLSAMNPKLRVPKRFINKAFPVAFPVDVNCACNAQLNHILDDIIKSVMPPSRVNVI 120 (663)
Q Consensus 42 ~~~vi~i~G-GKTtla~~v~~~~~~~~~~~~~~~~~~~F~~~~~~~~~~v~vs~~~~~~~~~l~~~i~~~l~~~~~~~~~ 120 (663)
++-+.|-+| |||+|++++.+ .+......... +.++ ..++...+...+....
T Consensus 143 pl~i~G~~G~GKTHLl~Ai~~------------~l~~~~~~~~v-----~yv~------~~~f~~~~~~~l~~~~----- 194 (450)
T PRK14087 143 PLFIYGESGMGKTHLLKAAKN------------YIESNFSDLKV-----SYMS------GDEFARKAVDILQKTH----- 194 (450)
T ss_pred ceEEECCCCCcHHHHHHHHHH------------HHHHhCCCCeE-----EEEE------HHHHHHHHHHHHHHhh-----
Confidence 344555555 99999999999 33322211111 2222 5667777776665311
Q ss_pred hhhHhhHHHHHHHHhhcCCcEEEEEeCCCC---ChhhHHHHHhhCCC-CCCCceEEEEEe
Q 037018 121 ISEDYKLKTIILRDYLTNKKDFIVLDDVFD---DREIWNDLEKFLPD-NQNGSRVLILVT 176 (663)
Q Consensus 121 ~~~~~~l~~~~l~~~L~~kr~LlVLDdv~~---~~~~~~~l~~~~~~-~~~gskIiiT~r 176 (663)
+. ...+++.++ +.-+||+||+.. +....+.+...+.. ...|..||+|+.
T Consensus 195 ----~~--~~~~~~~~~-~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd 247 (450)
T PRK14087 195 ----KE--IEQFKNEIC-QNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSD 247 (450)
T ss_pred ----hH--HHHHHHHhc-cCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECC
Confidence 11 233444444 345788999965 12233445444442 234557888854
No 145
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=93.21 E-value=0.55 Score=45.52 Aligned_cols=48 Identities=15% Similarity=0.074 Sum_probs=34.9
Q ss_pred CccccccchhhcHHHHHH----HHhcCCCCceEEEEEec-chhhHHHHHhcCC
Q 037018 16 STSCSSKTVKVKVKAVLV----WLFMLDSMWLQFLTAVA-YKTAFVADIYNNN 63 (663)
Q Consensus 16 ~~~~~~~G~~~~~~~i~~----~L~~~~~~~~~vi~i~G-GKTtla~~v~~~~ 63 (663)
+.-..++|.|.+++.+++ .+...+...+-+.|--| |||++++++.+..
T Consensus 24 ~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y 76 (249)
T PF05673_consen 24 IRLDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEY 76 (249)
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHH
Confidence 344579999999988874 34444444666666666 9999999999844
No 146
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=93.21 E-value=0.37 Score=48.73 Aligned_cols=42 Identities=10% Similarity=-0.008 Sum_probs=25.0
Q ss_pred cccchhhcHHHHHHHHhc---C--------C-C---CceEEEEEec-chhhHHHHHhc
Q 037018 20 SSKTVKVKVKAVLVWLFM---L--------D-S---MWLQFLTAVA-YKTAFVADIYN 61 (663)
Q Consensus 20 ~~~G~~~~~~~i~~~L~~---~--------~-~---~~~~vi~i~G-GKTtla~~v~~ 61 (663)
.++|.+.-+++|.++... . . . .++-+.|=.| ||||+|+.+.+
T Consensus 23 ~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~ 80 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQ 80 (284)
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHH
Confidence 588987777776554321 0 0 0 1233334444 99999987776
No 147
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=93.01 E-value=0.24 Score=51.94 Aligned_cols=96 Identities=15% Similarity=0.164 Sum_probs=59.9
Q ss_pred eEEEEEec----chhhHHHHHhcCCCccccCCCCccccCCceeeccCCCcceEeCCCcchhHHHHHHHHHHHhCCCCCcc
Q 037018 43 LQFLTAVA----YKTAFVADIYNNNVDLSAMNPKLRVPKRFINKAFPVAFPVDVNCACNAQLNHILDDIIKSVMPPSRVN 118 (663)
Q Consensus 43 ~~vi~i~G----GKTtla~~v~~~~~~~~~~~~~~~~~~~F~~~~~~~~~~v~vs~~~~~~~~~l~~~i~~~l~~~~~~~ 118 (663)
...+-||| |||.|++++.| ....+...... +.++ ...+..+.+..+..+.
T Consensus 113 ~nplfi~G~~GlGKTHLl~Aign------------~~~~~~~~a~v-----~y~~------se~f~~~~v~a~~~~~--- 166 (408)
T COG0593 113 YNPLFIYGGVGLGKTHLLQAIGN------------EALANGPNARV-----VYLT------SEDFTNDFVKALRDNE--- 166 (408)
T ss_pred CCcEEEECCCCCCHHHHHHHHHH------------HHHhhCCCceE-----Eecc------HHHHHHHHHHHHHhhh---
Confidence 45566666 99999999999 55555654333 4444 6667777777766422
Q ss_pred hhhhhHhhHHHHHHHHhhcCCcEEEEEeCCCC---ChhhHHHHHhhCCC-CCCCceEEEEEe
Q 037018 119 VIISEDYKLKTIILRDYLTNKKDFIVLDDVFD---DREIWNDLEKFLPD-NQNGSRVLILVT 176 (663)
Q Consensus 119 ~~~~~~~~l~~~~l~~~L~~kr~LlVLDdv~~---~~~~~~~l~~~~~~-~~~gskIiiT~r 176 (663)
..++++.. .--++++||+.- +....+.+-..|.. ...|-.||+|++
T Consensus 167 ----------~~~Fk~~y--~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsd 216 (408)
T COG0593 167 ----------MEKFKEKY--SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSD 216 (408)
T ss_pred ----------HHHHHHhh--ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcC
Confidence 45566666 445889999986 22233444444442 233448888864
No 148
>CHL00095 clpC Clp protease ATP binding subunit
Probab=93.01 E-value=0.085 Score=61.73 Aligned_cols=42 Identities=12% Similarity=-0.033 Sum_probs=35.7
Q ss_pred cccchhhcHHHHHHHHhcCCCCceEEEEEec-chhhHHHHHhc
Q 037018 20 SSKTVKVKVKAVLVWLFMLDSMWLQFLTAVA-YKTAFVADIYN 61 (663)
Q Consensus 20 ~~~G~~~~~~~i~~~L~~~~~~~~~vi~i~G-GKTtla~~v~~ 61 (663)
.++||++++++++++|.......+-++|=.| |||++|+.+..
T Consensus 180 ~~igr~~ei~~~~~~L~r~~~~n~lL~G~pGvGKTal~~~la~ 222 (821)
T CHL00095 180 PVIGREKEIERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQ 222 (821)
T ss_pred CCCCcHHHHHHHHHHHcccccCCeEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999887654566777777 99999999988
No 149
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=92.98 E-value=0.32 Score=53.86 Aligned_cols=93 Identities=14% Similarity=0.192 Sum_probs=50.6
Q ss_pred EEEec----chhhHHHHHhcCCCccccCCCCccccCCce--eeccCCCcceEeCCCcchhHHHHHHHHHHHhCCCCCcch
Q 037018 46 LTAVA----YKTAFVADIYNNNVDLSAMNPKLRVPKRFI--NKAFPVAFPVDVNCACNAQLNHILDDIIKSVMPPSRVNV 119 (663)
Q Consensus 46 i~i~G----GKTtla~~v~~~~~~~~~~~~~~~~~~~F~--~~~~~~~~~v~vs~~~~~~~~~l~~~i~~~l~~~~~~~~ 119 (663)
+-|+| |||.|+++|.+ ++...+. ..++ +. ..++..++...+....
T Consensus 317 L~LyG~sGsGKTHLL~AIa~------------~a~~~~~g~~V~Y-----it--------aeef~~el~~al~~~~---- 367 (617)
T PRK14086 317 LFIYGESGLGKTHLLHAIGH------------YARRLYPGTRVRY-----VS--------SEEFTNEFINSIRDGK---- 367 (617)
T ss_pred EEEECCCCCCHHHHHHHHHH------------HHHHhCCCCeEEE-----ee--------HHHHHHHHHHHHHhcc----
Confidence 55666 99999999999 4443322 2233 22 5556666655544221
Q ss_pred hhhhHhhHHHHHHHHhhcCCcEEEEEeCCCC--ChhhH-HHHHhhCCC-CCCCceEEEEEeC
Q 037018 120 IISEDYKLKTIILRDYLTNKKDFIVLDDVFD--DREIW-NDLEKFLPD-NQNGSRVLILVTD 177 (663)
Q Consensus 120 ~~~~~~~l~~~~l~~~L~~kr~LlVLDdv~~--~~~~~-~~l~~~~~~-~~~gskIiiT~r~ 177 (663)
...+++++++ -=+|||||+.. ..+.| +.+...+.. ..+|..||||+..
T Consensus 368 ---------~~~f~~~y~~-~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~ 419 (617)
T PRK14086 368 ---------GDSFRRRYRE-MDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDR 419 (617)
T ss_pred ---------HHHHHHHhhc-CCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCC
Confidence 2233344443 34788999976 22333 233333331 1336678888654
No 150
>PRK06696 uridine kinase; Validated
Probab=92.90 E-value=0.11 Score=50.55 Aligned_cols=38 Identities=16% Similarity=0.119 Sum_probs=30.6
Q ss_pred hhhcHHHHHHHHhcCCCCceEEEEEec----chhhHHHHHhc
Q 037018 24 VKVKVKAVLVWLFMLDSMWLQFLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 24 ~~~~~~~i~~~L~~~~~~~~~vi~i~G----GKTtla~~v~~ 61 (663)
|++.+++|.+.+.........+|||.| ||||+|+++..
T Consensus 3 ~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~ 44 (223)
T PRK06696 3 RKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAE 44 (223)
T ss_pred HHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHH
Confidence 566777888877754333678999999 99999999998
No 151
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.88 E-value=0.53 Score=51.67 Aligned_cols=42 Identities=14% Similarity=-0.122 Sum_probs=33.4
Q ss_pred cccchhhcHHHHHHHHhcCCCCc-eEEEEEec-chhhHHHHHhc
Q 037018 20 SSKTVKVKVKAVLVWLFMLDSMW-LQFLTAVA-YKTAFVADIYN 61 (663)
Q Consensus 20 ~~~G~~~~~~~i~~~L~~~~~~~-~~vi~i~G-GKTtla~~v~~ 61 (663)
.+||-+.-++.+.+++....-+. +-+.|-.| ||||+|+.+.+
T Consensus 17 divGq~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk 60 (509)
T PRK14958 17 EVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAK 60 (509)
T ss_pred HhcCCHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHH
Confidence 68999999999999997765423 35556666 99999999887
No 152
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=92.88 E-value=0.52 Score=52.87 Aligned_cols=43 Identities=12% Similarity=-0.099 Sum_probs=32.8
Q ss_pred cccchhhcHHHHHHHHhcCCCCc-eEEEEEec-chhhHHHHHhcC
Q 037018 20 SSKTVKVKVKAVLVWLFMLDSMW-LQFLTAVA-YKTAFVADIYNN 62 (663)
Q Consensus 20 ~~~G~~~~~~~i~~~L~~~~~~~-~~vi~i~G-GKTtla~~v~~~ 62 (663)
.++|-+.-++.+.+.+..+.-+. +-+.|-.| ||||+|+.+.+.
T Consensus 17 divGQe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~ 61 (647)
T PRK07994 17 EVVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKG 61 (647)
T ss_pred HhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 68999999999999888764322 34555556 999999999883
No 153
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=92.85 E-value=0.29 Score=57.31 Aligned_cols=43 Identities=12% Similarity=-0.099 Sum_probs=33.0
Q ss_pred ccccchhhcHHHHHHHHhc------CCCCceEEEEEec----chhhHHHHHhc
Q 037018 19 CSSKTVKVKVKAVLVWLFM------LDSMWLQFLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 19 ~~~~G~~~~~~~i~~~L~~------~~~~~~~vi~i~G----GKTtla~~v~~ 61 (663)
..++|.+..++.+.+.+.. .+..+..++-++| |||.+|+++..
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~ 618 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAE 618 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999988853 2222456777888 99999998877
No 154
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=92.73 E-value=0.25 Score=57.08 Aligned_cols=114 Identities=9% Similarity=0.046 Sum_probs=64.2
Q ss_pred ccccchhhcHHHHHHHHhcC------CCCceEEEEEec----chhhHHHHHhcCCCccccCCCCccccCCceeeccCCCc
Q 037018 19 CSSKTVKVKVKAVLVWLFML------DSMWLQFLTAVA----YKTAFVADIYNNNVDLSAMNPKLRVPKRFINKAFPVAF 88 (663)
Q Consensus 19 ~~~~G~~~~~~~i~~~L~~~------~~~~~~vi~i~G----GKTtla~~v~~~~~~~~~~~~~~~~~~~F~~~~~~~~~ 88 (663)
..++|.+..++.+.+.+... +.....++-++| |||+||+.+.+ ..... .+.
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~------------~l~~~---~~~---- 514 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAE------------ALGVH---LER---- 514 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHH------------HhcCC---eEE----
Confidence 46789999999988888642 111344566667 99999999988 43222 222
Q ss_pred ceEeCCCcchhHHHHHHHHHHHhCCCCCcchhhhhHhhHHHHHHHHhhcCCcE-EEEEeCCCC-ChhhHHHHHhhCCC
Q 037018 89 PVDVNCACNAQLNHILDDIIKSVMPPSRVNVIISEDYKLKTIILRDYLTNKKD-FIVLDDVFD-DREIWNDLEKFLPD 164 (663)
Q Consensus 89 ~v~vs~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~~l~~~L~~kr~-LlVLDdv~~-~~~~~~~l~~~~~~ 164 (663)
+..+.-.. .. .+.+-++......+.+. ...+.+.++.+.+ +|+||++.. .++.++.+...+..
T Consensus 515 -~d~se~~~--~~----~~~~lig~~~gyvg~~~------~~~l~~~~~~~p~~VvllDEieka~~~~~~~Ll~~ld~ 579 (731)
T TIGR02639 515 -FDMSEYME--KH----TVSRLIGAPPGYVGFEQ------GGLLTEAVRKHPHCVLLLDEIEKAHPDIYNILLQVMDY 579 (731)
T ss_pred -EeCchhhh--cc----cHHHHhcCCCCCcccch------hhHHHHHHHhCCCeEEEEechhhcCHHHHHHHHHhhcc
Confidence 33332211 10 11112222211111111 1223344444555 899999997 68888888887764
No 155
>PRK08084 DNA replication initiation factor; Provisional
Probab=92.61 E-value=0.29 Score=48.03 Aligned_cols=19 Identities=0% Similarity=0.067 Sum_probs=15.7
Q ss_pred EEEEEec----chhhHHHHHhcC
Q 037018 44 QFLTAVA----YKTAFVADIYNN 62 (663)
Q Consensus 44 ~vi~i~G----GKTtla~~v~~~ 62 (663)
+.+-|+| |||+|++++++.
T Consensus 46 ~~l~l~Gp~G~GKThLl~a~~~~ 68 (235)
T PRK08084 46 GYIYLWSREGAGRSHLLHAACAE 68 (235)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 4566777 999999999993
No 156
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.47 E-value=0.64 Score=49.09 Aligned_cols=41 Identities=12% Similarity=-0.130 Sum_probs=32.4
Q ss_pred cccchhhcHHHHHHHHhcCCCCceEEEEEec----chhhHHHHHhcC
Q 037018 20 SSKTVKVKVKAVLVWLFMLDSMWLQFLTAVA----YKTAFVADIYNN 62 (663)
Q Consensus 20 ~~~G~~~~~~~i~~~L~~~~~~~~~vi~i~G----GKTtla~~v~~~ 62 (663)
.++|.+..++.+.+.+....- ...+=++| ||||+|+.+.+.
T Consensus 18 ~iig~~~~~~~l~~~i~~~~~--~~~~L~~G~~G~GKt~~a~~la~~ 62 (367)
T PRK14970 18 DVVGQSHITNTLLNAIENNHL--AQALLFCGPRGVGKTTCARILARK 62 (367)
T ss_pred hcCCcHHHHHHHHHHHHcCCC--CeEEEEECCCCCCHHHHHHHHHHH
Confidence 579999999999999976542 34555666 999999999773
No 157
>PRK07261 topology modulation protein; Provisional
Probab=92.47 E-value=0.24 Score=45.87 Aligned_cols=21 Identities=5% Similarity=0.085 Sum_probs=16.0
Q ss_pred ceEEEEEec-chhhHHHHHhcC
Q 037018 42 WLQFLTAVA-YKTAFVADIYNN 62 (663)
Q Consensus 42 ~~~vi~i~G-GKTtla~~v~~~ 62 (663)
++-|+|-.| ||||||+++...
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~ 23 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQH 23 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 345666666 999999999874
No 158
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.46 E-value=0.028 Score=52.03 Aligned_cols=82 Identities=20% Similarity=0.210 Sum_probs=48.2
Q ss_pred ccEEEeecCCCccccchhhhhcCCCCCCEEEEeecCccccccccccccccCCCCceEEEEeccc-CCCCChhhhcCCCCC
Q 037018 489 VQTLRISGDLSHYHSGVSKSLCELHKLECLQLVHEGRMWQLSRMVLSEYQFPPCLTQLSLSNTQ-LMEDPMPALEKLPHL 567 (663)
Q Consensus 489 L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~lp~~~~~l~~~l~~L~~L~L~~~~-l~~~~~~~l~~l~~L 567 (663)
++.++.+++ .....-...+.+++.++.|.+.+|..+...-- ..++...++|+.|+|++|. +++..+..+..+++|
T Consensus 103 IeaVDAsds--~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L--~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknL 178 (221)
T KOG3864|consen 103 IEAVDASDS--SIMYEGLEHLRDLRSIKSLSLANCKYFDDWCL--ERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNL 178 (221)
T ss_pred EEEEecCCc--hHHHHHHHHHhccchhhhheeccccchhhHHH--HHhcccccchheeeccCCCeechhHHHHHHHhhhh
Confidence 344555554 34444455566666677777766665542110 0233336777777777773 666667777777777
Q ss_pred cEEEeec
Q 037018 568 EVLKLKQ 574 (663)
Q Consensus 568 ~~L~L~~ 574 (663)
+.|.|.+
T Consensus 179 r~L~l~~ 185 (221)
T KOG3864|consen 179 RRLHLYD 185 (221)
T ss_pred HHHHhcC
Confidence 7777764
No 159
>PRK07952 DNA replication protein DnaC; Validated
Probab=92.34 E-value=0.62 Score=45.77 Aligned_cols=77 Identities=17% Similarity=0.194 Sum_probs=41.1
Q ss_pred eEEEEEec-chhhHHHHHhcCCCccccCCCCccccCCceeeccCCCcceEeCCCcchhHHHHHHHHHHHhCCCCCcchhh
Q 037018 43 LQFLTAVA-YKTAFVADIYNNNVDLSAMNPKLRVPKRFINKAFPVAFPVDVNCACNAQLNHILDDIIKSVMPPSRVNVII 121 (663)
Q Consensus 43 ~~vi~i~G-GKTtla~~v~~~~~~~~~~~~~~~~~~~F~~~~~~~~~~v~vs~~~~~~~~~l~~~i~~~l~~~~~~~~~~ 121 (663)
+-+.|-.| |||+||.++.+ .+..+-...++ + + ..++...+-........
T Consensus 102 ~~l~G~~GtGKThLa~aia~------------~l~~~g~~v~~-----i------t--~~~l~~~l~~~~~~~~~----- 151 (244)
T PRK07952 102 FIFSGKPGTGKNHLAAAICN------------ELLLRGKSVLI-----I------T--VADIMSAMKDTFSNSET----- 151 (244)
T ss_pred EEEECCCCCCHHHHHHHHHH------------HHHhcCCeEEE-----E------E--HHHHHHHHHHHHhhccc-----
Confidence 33333344 99999999999 44333334444 3 2 55555555444321110
Q ss_pred hhHhhHHHHHHHHhhcCCcEEEEEeCCCC-ChhhHH
Q 037018 122 SEDYKLKTIILRDYLTNKKDFIVLDDVFD-DREIWN 156 (663)
Q Consensus 122 ~~~~~l~~~~l~~~L~~kr~LlVLDdv~~-~~~~~~ 156 (663)
. ...+.+.+. +-=+||+||+.. ...+|+
T Consensus 152 ~------~~~~l~~l~-~~dlLvIDDig~~~~s~~~ 180 (244)
T PRK07952 152 S------EEQLLNDLS-NVDLLVIDEIGVQTESRYE 180 (244)
T ss_pred c------HHHHHHHhc-cCCEEEEeCCCCCCCCHHH
Confidence 0 122334455 344788899976 334455
No 160
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.20 E-value=0.79 Score=49.73 Aligned_cols=42 Identities=14% Similarity=-0.068 Sum_probs=32.1
Q ss_pred cccchhhcHHHHHHHHhcCCC-CceEEEEEec-chhhHHHHHhc
Q 037018 20 SSKTVKVKVKAVLVWLFMLDS-MWLQFLTAVA-YKTAFVADIYN 61 (663)
Q Consensus 20 ~~~G~~~~~~~i~~~L~~~~~-~~~~vi~i~G-GKTtla~~v~~ 61 (663)
.++|-+.-++.+.+.+..+.- +.+-.-|-.| ||||+|+.+.+
T Consensus 14 dliGQe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk 57 (491)
T PRK14964 14 DLVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISL 57 (491)
T ss_pred HhcCcHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHH
Confidence 689999888888888776543 2355666666 99999998876
No 161
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=92.07 E-value=0.86 Score=45.51 Aligned_cols=35 Identities=14% Similarity=0.004 Sum_probs=25.1
Q ss_pred hhcHHHHHHHHhcCCCCceEEEEEec-chhhHHHHHhc
Q 037018 25 KVKVKAVLVWLFMLDSMWLQFLTAVA-YKTAFVADIYN 61 (663)
Q Consensus 25 ~~~~~~i~~~L~~~~~~~~~vi~i~G-GKTtla~~v~~ 61 (663)
..-++++..++..+. .+-+.|-.| |||++|+++.+
T Consensus 8 ~~l~~~~l~~l~~g~--~vLL~G~~GtGKT~lA~~la~ 43 (262)
T TIGR02640 8 KRVTSRALRYLKSGY--PVHLRGPAGTGKTTLAMHVAR 43 (262)
T ss_pred HHHHHHHHHHHhcCC--eEEEEcCCCCCHHHHHHHHHH
Confidence 344556666666543 567777777 99999999987
No 162
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=92.05 E-value=0.11 Score=49.29 Aligned_cols=134 Identities=16% Similarity=0.112 Sum_probs=58.9
Q ss_pred ccchhhcHHHHHHHHhcCCCCceEEEEEec-chhhHHHHHhcCCCccccCCCCccccCCceeeccCCCcceEeCCCcch-
Q 037018 21 SKTVKVKVKAVLVWLFMLDSMWLQFLTAVA-YKTAFVADIYNNNVDLSAMNPKLRVPKRFINKAFPVAFPVDVNCACNA- 98 (663)
Q Consensus 21 ~~G~~~~~~~i~~~L~~~~~~~~~vi~i~G-GKTtla~~v~~~~~~~~~~~~~~~~~~~F~~~~~~~~~~v~vs~~~~~- 98 (663)
+..+..+.+..++.|...+ -+-+.|-.| |||.||-+..-+. -..++|+..++. --.|.+.++...
T Consensus 2 I~p~~~~Q~~~~~al~~~~--~v~~~G~AGTGKT~LA~a~Al~~----------v~~g~~~kiii~-Rp~v~~~~~lGfl 68 (205)
T PF02562_consen 2 IKPKNEEQKFALDALLNND--LVIVNGPAGTGKTFLALAAALEL----------VKEGEYDKIIIT-RPPVEAGEDLGFL 68 (205)
T ss_dssp ----SHHHHHHHHHHHH-S--EEEEE--TTSSTTHHHHHHHHHH----------HHTTS-SEEEEE-E-S--TT----SS
T ss_pred ccCCCHHHHHHHHHHHhCC--eEEEECCCCCcHHHHHHHHHHHH----------HHhCCCcEEEEE-ecCCCCccccccC
Confidence 3456677788888888322 355555566 9999998876544 234667766650 000121111110
Q ss_pred --hH----HHHHHHHHHHhC---CCCCcchhhhh--HhhHHHHHHHHhhcCCc---EEEEEeCCCC-ChhhHHHHHhhCC
Q 037018 99 --QL----NHILDDIIKSVM---PPSRVNVIISE--DYKLKTIILRDYLTNKK---DFIVLDDVFD-DREIWNDLEKFLP 163 (663)
Q Consensus 99 --~~----~~l~~~i~~~l~---~~~~~~~~~~~--~~~l~~~~l~~~L~~kr---~LlVLDdv~~-~~~~~~~l~~~~~ 163 (663)
+. .-..+-+...+. .... ++.. ...+ ...-...++|+. -+||+|+.-+ .++++..+...
T Consensus 69 pG~~~eK~~p~~~p~~d~l~~~~~~~~---~~~~~~~~~I-e~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~ilTR-- 142 (205)
T PF02562_consen 69 PGDLEEKMEPYLRPIYDALEELFGKEK---LEELIQNGKI-EIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMILTR-- 142 (205)
T ss_dssp ---------TTTHHHHHHHTTTS-TTC---HHHHHHTTSE-EEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHHHTT--
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhChHh---HHHHhhcCeE-EEEehhhhcCccccceEEEEecccCCCHHHHHHHHcc--
Confidence 00 001122222221 1111 1111 0001 001124466644 5999999887 46677777654
Q ss_pred CCCCCceEEEE
Q 037018 164 DNQNGSRVLIL 174 (663)
Q Consensus 164 ~~~~gskIiiT 174 (663)
.+.|||||++
T Consensus 143 -~g~~skii~~ 152 (205)
T PF02562_consen 143 -IGEGSKIIIT 152 (205)
T ss_dssp -B-TT-EEEEE
T ss_pred -cCCCcEEEEe
Confidence 4679999999
No 163
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=92.04 E-value=0.13 Score=48.10 Aligned_cols=22 Identities=23% Similarity=0.114 Sum_probs=15.9
Q ss_pred ceEEEEEec-chhhHHHHHhcCC
Q 037018 42 WLQFLTAVA-YKTAFVADIYNNN 63 (663)
Q Consensus 42 ~~~vi~i~G-GKTtla~~v~~~~ 63 (663)
.+-+.|=.| |||.||.++.+..
T Consensus 49 ~l~l~G~~G~GKThLa~ai~~~~ 71 (178)
T PF01695_consen 49 NLILYGPPGTGKTHLAVAIANEA 71 (178)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEEhhHhHHHHHHHHHHHHHh
Confidence 444455455 9999999999833
No 164
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=91.96 E-value=0.73 Score=51.01 Aligned_cols=42 Identities=10% Similarity=-0.101 Sum_probs=32.2
Q ss_pred cccchhhcHHHHHHHHhcCCCC-ceEEEEEec-chhhHHHHHhc
Q 037018 20 SSKTVKVKVKAVLVWLFMLDSM-WLQFLTAVA-YKTAFVADIYN 61 (663)
Q Consensus 20 ~~~G~~~~~~~i~~~L~~~~~~-~~~vi~i~G-GKTtla~~v~~ 61 (663)
.++|.+..++.+.+.+..+.-+ .+-+.|--| ||||+|+.+.+
T Consensus 17 dIIGQe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk 60 (605)
T PRK05896 17 QIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAK 60 (605)
T ss_pred HhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999988765432 233445555 99999999887
No 165
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=91.96 E-value=0.33 Score=52.32 Aligned_cols=94 Identities=10% Similarity=0.119 Sum_probs=49.0
Q ss_pred EEEEec----chhhHHHHHhcCCCccccCCCCccccCCceeeccCCCcceEeCCCcchhHHHHHHHHHHHhCCCCCcchh
Q 037018 45 FLTAVA----YKTAFVADIYNNNVDLSAMNPKLRVPKRFINKAFPVAFPVDVNCACNAQLNHILDDIIKSVMPPSRVNVI 120 (663)
Q Consensus 45 vi~i~G----GKTtla~~v~~~~~~~~~~~~~~~~~~~F~~~~~~~~~~v~vs~~~~~~~~~l~~~i~~~l~~~~~~~~~ 120 (663)
-+-|+| |||+||+++.+ ++...-...++ + + ...+...+...+....
T Consensus 143 pl~L~G~~G~GKTHLl~Ai~~------------~l~~~~~~v~y-----i--~------~~~f~~~~~~~l~~~~----- 192 (445)
T PRK12422 143 PIYLFGPEGSGKTHLMQAAVH------------ALRESGGKILY-----V--R------SELFTEHLVSAIRSGE----- 192 (445)
T ss_pred eEEEEcCCCCCHHHHHHHHHH------------HHHHcCCCEEE-----e--e------HHHHHHHHHHHHhcch-----
Confidence 345555 99999999999 44332222233 2 2 3455556655554221
Q ss_pred hhhHhhHHHHHHHHhhcCCcEEEEEeCCCC-C--hhhHHHHHhhCCC-CCCCceEEEEEeC
Q 037018 121 ISEDYKLKTIILRDYLTNKKDFIVLDDVFD-D--REIWNDLEKFLPD-NQNGSRVLILVTD 177 (663)
Q Consensus 121 ~~~~~~l~~~~l~~~L~~kr~LlVLDdv~~-~--~~~~~~l~~~~~~-~~~gskIiiT~r~ 177 (663)
...+++..+ +.-+|++||+.. . ....+.+...+.. ...|..||+|+..
T Consensus 193 --------~~~f~~~~~-~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~ 244 (445)
T PRK12422 193 --------MQRFRQFYR-NVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTC 244 (445)
T ss_pred --------HHHHHHHcc-cCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCC
Confidence 223333343 344778899876 1 1222333333321 1236678888643
No 166
>PRK10865 protein disaggregation chaperone; Provisional
Probab=91.92 E-value=0.57 Score=55.05 Aligned_cols=42 Identities=14% Similarity=-0.065 Sum_probs=31.3
Q ss_pred cccchhhcHHHHHHHHhcC------CCCceEEEEEec----chhhHHHHHhc
Q 037018 20 SSKTVKVKVKAVLVWLFML------DSMWLQFLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 20 ~~~G~~~~~~~i~~~L~~~------~~~~~~vi~i~G----GKTtla~~v~~ 61 (663)
.++|.+..++.|...+... +..+..++-++| |||++|+.+.+
T Consensus 569 ~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~ 620 (857)
T PRK10865 569 RVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALAN 620 (857)
T ss_pred eEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 5789999888888887642 111335666777 99999999998
No 167
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=91.86 E-value=0.29 Score=46.55 Aligned_cols=20 Identities=10% Similarity=0.094 Sum_probs=18.9
Q ss_pred ceEEEEEec----chhhHHHHHhc
Q 037018 42 WLQFLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 42 ~~~vi~i~G----GKTtla~~v~~ 61 (663)
++.+|||.| ||||+|+.++.
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~ 30 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSE 30 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHH
Confidence 678999999 99999999999
No 168
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=91.81 E-value=0.5 Score=49.00 Aligned_cols=45 Identities=11% Similarity=-0.052 Sum_probs=33.5
Q ss_pred cccccchhhcHHHHHHHHhcC--CCCceEEEEEec----chhhHHHHHhcC
Q 037018 18 SCSSKTVKVKVKAVLVWLFML--DSMWLQFLTAVA----YKTAFVADIYNN 62 (663)
Q Consensus 18 ~~~~~G~~~~~~~i~~~L~~~--~~~~~~vi~i~G----GKTtla~~v~~~ 62 (663)
-..++|++..++.+..++... .......+-++| ||||+|+.+.+.
T Consensus 24 ~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~ 74 (328)
T PRK00080 24 LDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANE 74 (328)
T ss_pred HHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHH
Confidence 347999999999998888641 111344556677 999999999993
No 169
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=91.77 E-value=0.87 Score=49.31 Aligned_cols=42 Identities=12% Similarity=-0.116 Sum_probs=31.8
Q ss_pred cccchhhcHHHHHHHHhcCCCC-ceEEEEEec-chhhHHHHHhc
Q 037018 20 SSKTVKVKVKAVLVWLFMLDSM-WLQFLTAVA-YKTAFVADIYN 61 (663)
Q Consensus 20 ~~~G~~~~~~~i~~~L~~~~~~-~~~vi~i~G-GKTtla~~v~~ 61 (663)
.++|-+..++.+.+++..+.-. .+-+.|-.| ||||+|+.+.+
T Consensus 18 diiGq~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk 61 (451)
T PRK06305 18 EILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAK 61 (451)
T ss_pred HhcCcHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHH
Confidence 6899999999999999765431 234445555 99999998877
No 170
>CHL00181 cbbX CbbX; Provisional
Probab=91.74 E-value=0.75 Score=46.56 Aligned_cols=42 Identities=7% Similarity=-0.126 Sum_probs=25.4
Q ss_pred cccchhhcHHHHHHHH---hcC---------CCCceEEEEEec----chhhHHHHHhc
Q 037018 20 SSKTVKVKVKAVLVWL---FML---------DSMWLQFLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 20 ~~~G~~~~~~~i~~~L---~~~---------~~~~~~vi~i~G----GKTtla~~v~~ 61 (663)
.++|.+.-+++|.++. ... ....-..+-++| ||||+|+.+++
T Consensus 24 ~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~ 81 (287)
T CHL00181 24 ELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMAD 81 (287)
T ss_pred hcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 5889877777665543 111 001112244455 99999999977
No 171
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=91.68 E-value=0.22 Score=50.58 Aligned_cols=39 Identities=13% Similarity=0.014 Sum_probs=27.8
Q ss_pred cccchhhcHHHHHHHHhcCCCCceEEEEEec-chhhHHHH
Q 037018 20 SSKTVKVKVKAVLVWLFMLDSMWLQFLTAVA-YKTAFVAD 58 (663)
Q Consensus 20 ~~~G~~~~~~~i~~~L~~~~~~~~~vi~i~G-GKTtla~~ 58 (663)
.+-+|+.+..--..+|.++.-+=+..+|..| |||.||-+
T Consensus 225 Gi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALa 264 (436)
T COG1875 225 GIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALA 264 (436)
T ss_pred ccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHH
Confidence 3446677777888888888653455666666 99988765
No 172
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=91.34 E-value=0.13 Score=27.32 Aligned_cols=11 Identities=36% Similarity=0.434 Sum_probs=3.0
Q ss_pred cCeEeccCCCC
Q 037018 397 LKYLKLNIPSL 407 (663)
Q Consensus 397 L~~L~L~~~~i 407 (663)
|+.|++++|.+
T Consensus 3 L~~L~l~~n~L 13 (17)
T PF13504_consen 3 LRTLDLSNNRL 13 (17)
T ss_dssp -SEEEETSS--
T ss_pred cCEEECCCCCC
Confidence 33333333333
No 173
>CHL00095 clpC Clp protease ATP binding subunit
Probab=91.33 E-value=0.76 Score=53.96 Aligned_cols=117 Identities=14% Similarity=-0.005 Sum_probs=63.6
Q ss_pred ccccchhhcHHHHHHHHhcC------CCCceEEEEEec----chhhHHHHHhcCCCccccCCCCccccCCceeeccCCCc
Q 037018 19 CSSKTVKVKVKAVLVWLFML------DSMWLQFLTAVA----YKTAFVADIYNNNVDLSAMNPKLRVPKRFINKAFPVAF 88 (663)
Q Consensus 19 ~~~~G~~~~~~~i~~~L~~~------~~~~~~vi~i~G----GKTtla~~v~~~~~~~~~~~~~~~~~~~F~~~~~~~~~ 88 (663)
..++|-+..++.|.+.+... ...+..++-++| |||+||+.+.+ .+-+.-+..+-
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~------------~l~~~~~~~~~---- 572 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALAS------------YFFGSEDAMIR---- 572 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHH------------HhcCCccceEE----
Confidence 46889999999998887532 111344455677 99999999887 32111111222
Q ss_pred ceEeCCCcchhHHHHHHHHHHHhCCCCCcchhhhhHhhHHHHHHHHhhcCCcE-EEEEeCCCC-ChhhHHHHHhhCCC
Q 037018 89 PVDVNCACNAQLNHILDDIIKSVMPPSRVNVIISEDYKLKTIILRDYLTNKKD-FIVLDDVFD-DREIWNDLEKFLPD 164 (663)
Q Consensus 89 ~v~vs~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~~l~~~L~~kr~-LlVLDdv~~-~~~~~~~l~~~~~~ 164 (663)
+..+.-.+ ... +.+-++.+....+.+. ...+.+.++.+.| +|+||++.. .++.++.+...+..
T Consensus 573 -~d~s~~~~--~~~----~~~l~g~~~gyvg~~~------~~~l~~~~~~~p~~VvllDeieka~~~v~~~Llq~le~ 637 (821)
T CHL00095 573 -LDMSEYME--KHT----VSKLIGSPPGYVGYNE------GGQLTEAVRKKPYTVVLFDEIEKAHPDIFNLLLQILDD 637 (821)
T ss_pred -EEchhccc--ccc----HHHhcCCCCcccCcCc------cchHHHHHHhCCCeEEEECChhhCCHHHHHHHHHHhcc
Confidence 33332212 111 1111222211111111 1234455555655 788999987 68888888887764
No 174
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=91.29 E-value=1.9 Score=41.39 Aligned_cols=115 Identities=17% Similarity=0.123 Sum_probs=72.7
Q ss_pred ccccccchhhcHHHHHH----HHhcCCCCceEEEEEec-chhhHHHHHhcCCCccccCCCCccccCCceeeccCCCcceE
Q 037018 17 TSCSSKTVKVKVKAVLV----WLFMLDSMWLQFLTAVA-YKTAFVADIYNNNVDLSAMNPKLRVPKRFINKAFPVAFPVD 91 (663)
Q Consensus 17 ~~~~~~G~~~~~~~i~~----~L~~~~~~~~~vi~i~G-GKTtla~~v~~~~~~~~~~~~~~~~~~~F~~~~~~~~~~v~ 91 (663)
.-..++|.|..++.+++ .+.+.++..+-..|.-| ||+.|+|++.+ ++....-. - |+
T Consensus 58 ~L~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~------------e~~~~glr--L-----VE 118 (287)
T COG2607 58 DLADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLN------------EYADEGLR--L-----VE 118 (287)
T ss_pred CHHHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHH------------HHHhcCCe--E-----EE
Confidence 33578998888877764 34445555788888888 99999999999 44444433 3 55
Q ss_pred eCCCcchhHHHHHHHHHHHhCCCCCcchhhhhHhhHHHHHHHHhh--cCCcEEEEEeCCCC--ChhhHHHHHhhCCCC--
Q 037018 92 VNCACNAQLNHILDDIIKSVMPPSRVNVIISEDYKLKTIILRDYL--TNKKDFIVLDDVFD--DREIWNDLEKFLPDN-- 165 (663)
Q Consensus 92 vs~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~~l~~~L--~~kr~LlVLDdv~~--~~~~~~~l~~~~~~~-- 165 (663)
|++.-- ..+ ..|.+.| +.+||.|.-||..- +......+...+..+
T Consensus 119 V~k~dl---------------------------~~L--p~l~~~Lr~~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~ve 169 (287)
T COG2607 119 VDKEDL---------------------------ATL--PDLVELLRARPEKFILFCDDLSFEEGDDAYKALKSALEGGVE 169 (287)
T ss_pred EcHHHH---------------------------hhH--HHHHHHHhcCCceEEEEecCCCCCCCchHHHHHHHHhcCCcc
Confidence 553311 111 1222333 35899999999985 466788888888743
Q ss_pred CCCceEEEE-EeCCC
Q 037018 166 QNGSRVLIL-VTDPF 179 (663)
Q Consensus 166 ~~gskIiiT-~r~~~ 179 (663)
++-.-||+. |.++.
T Consensus 170 ~rP~NVl~YATSNRR 184 (287)
T COG2607 170 GRPANVLFYATSNRR 184 (287)
T ss_pred cCCCeEEEEEecCCc
Confidence 334556655 44443
No 175
>PRK10865 protein disaggregation chaperone; Provisional
Probab=91.22 E-value=0.24 Score=58.04 Aligned_cols=42 Identities=12% Similarity=-0.012 Sum_probs=35.2
Q ss_pred cccchhhcHHHHHHHHhcCCCCceEEEEEec-chhhHHHHHhc
Q 037018 20 SSKTVKVKVKAVLVWLFMLDSMWLQFLTAVA-YKTAFVADIYN 61 (663)
Q Consensus 20 ~~~G~~~~~~~i~~~L~~~~~~~~~vi~i~G-GKTtla~~v~~ 61 (663)
.++||+.++.++++.|........-.+|=.| ||||+|+.+..
T Consensus 179 ~vigr~~ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~ 221 (857)
T PRK10865 179 PVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQ 221 (857)
T ss_pred cCCCCHHHHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999887654555666666 99999999988
No 176
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=91.18 E-value=0.61 Score=52.28 Aligned_cols=45 Identities=18% Similarity=0.084 Sum_probs=35.6
Q ss_pred ccccccchhhcHHHHHHHHhcCCC--CceEEEEEec----chhhHHHHHhc
Q 037018 17 TSCSSKTVKVKVKAVLVWLFMLDS--MWLQFLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 17 ~~~~~~G~~~~~~~i~~~L~~~~~--~~~~vi~i~G----GKTtla~~v~~ 61 (663)
....++|-+..++++..|+..... ..-+++.++| ||||+++.+.+
T Consensus 82 ~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~ 132 (637)
T TIGR00602 82 TQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSK 132 (637)
T ss_pred CHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 334789999999999999976432 2345678888 99999999998
No 177
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=91.12 E-value=0.22 Score=57.23 Aligned_cols=42 Identities=10% Similarity=-0.085 Sum_probs=34.8
Q ss_pred cccchhhcHHHHHHHHhcCCCCceEEEEEec-chhhHHHHHhc
Q 037018 20 SSKTVKVKVKAVLVWLFMLDSMWLQFLTAVA-YKTAFVADIYN 61 (663)
Q Consensus 20 ~~~G~~~~~~~i~~~L~~~~~~~~~vi~i~G-GKTtla~~v~~ 61 (663)
.++||+.+++++++.|.......+-.+|=.| |||++|+.+..
T Consensus 187 ~liGR~~ei~~~i~iL~r~~~~n~LLvGppGvGKT~lae~la~ 229 (758)
T PRK11034 187 PLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAW 229 (758)
T ss_pred cCcCCCHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999886544566666666 99999999987
No 178
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.04 E-value=1.3 Score=48.21 Aligned_cols=41 Identities=10% Similarity=-0.143 Sum_probs=30.1
Q ss_pred cccchhhcHHHHHHHHhcCCCCceEEEEEec----chhhHHHHHhcC
Q 037018 20 SSKTVKVKVKAVLVWLFMLDSMWLQFLTAVA----YKTAFVADIYNN 62 (663)
Q Consensus 20 ~~~G~~~~~~~i~~~L~~~~~~~~~vi~i~G----GKTtla~~v~~~ 62 (663)
.++|.+.-++.+.+.+..+.- ...+=++| ||||+|+.+.+.
T Consensus 15 divGq~~i~~~L~~~i~~~~l--~~~~Lf~GPpGtGKTTlA~~lA~~ 59 (472)
T PRK14962 15 EVVGQDHVKKLIINALKKNSI--SHAYIFAGPRGTGKTTVARILAKS 59 (472)
T ss_pred HccCcHHHHHHHHHHHHcCCC--CeEEEEECCCCCCHHHHHHHHHHH
Confidence 689998888888887765542 23344555 999999999873
No 179
>PRK06835 DNA replication protein DnaC; Validated
Probab=91.00 E-value=0.47 Score=48.86 Aligned_cols=21 Identities=24% Similarity=0.086 Sum_probs=16.5
Q ss_pred ceEEEEEec-chhhHHHHHhcC
Q 037018 42 WLQFLTAVA-YKTAFVADIYNN 62 (663)
Q Consensus 42 ~~~vi~i~G-GKTtla~~v~~~ 62 (663)
.+-+.|=.| |||+||.+|.+.
T Consensus 185 ~Lll~G~~GtGKThLa~aIa~~ 206 (329)
T PRK06835 185 NLLFYGNTGTGKTFLSNCIAKE 206 (329)
T ss_pred cEEEECCCCCcHHHHHHHHHHH
Confidence 555556566 999999999993
No 180
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=90.98 E-value=0.28 Score=57.69 Aligned_cols=42 Identities=12% Similarity=-0.013 Sum_probs=35.2
Q ss_pred cccchhhcHHHHHHHHhcCCCCceEEEEEec-chhhHHHHHhc
Q 037018 20 SSKTVKVKVKAVLVWLFMLDSMWLQFLTAVA-YKTAFVADIYN 61 (663)
Q Consensus 20 ~~~G~~~~~~~i~~~L~~~~~~~~~vi~i~G-GKTtla~~v~~ 61 (663)
.++||+.++++++..|........-++|=.| |||++|+.+..
T Consensus 174 ~~igr~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~ 216 (852)
T TIGR03346 174 PVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQ 216 (852)
T ss_pred cCCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHH
Confidence 4899999999999999876554566666667 99999999888
No 181
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=90.92 E-value=0.17 Score=26.90 Aligned_cols=17 Identities=35% Similarity=0.550 Sum_probs=11.0
Q ss_pred CcccEEEecCCcCcccC
Q 037018 372 KHLRVLNLGSAILYQYP 388 (663)
Q Consensus 372 ~~Lr~L~L~~~~l~~lp 388 (663)
++|+.|++++|.++.+|
T Consensus 1 ~~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNRLTSLP 17 (17)
T ss_dssp TT-SEEEETSS--SSE-
T ss_pred CccCEEECCCCCCCCCc
Confidence 57899999999987665
No 182
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=90.84 E-value=0.46 Score=49.78 Aligned_cols=43 Identities=7% Similarity=-0.248 Sum_probs=32.7
Q ss_pred ccccchhhcHHHHHHHHhcCCCC-ceEEEEEec-chhhHHHHHhc
Q 037018 19 CSSKTVKVKVKAVLVWLFMLDSM-WLQFLTAVA-YKTAFVADIYN 61 (663)
Q Consensus 19 ~~~~G~~~~~~~i~~~L~~~~~~-~~~vi~i~G-GKTtla~~v~~ 61 (663)
..++|-+..++.+.+.+..+.-+ -+-+.|-.| ||||+|..+.+
T Consensus 19 ~~iiGq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~ 63 (365)
T PRK07471 19 TALFGHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMAR 63 (365)
T ss_pred hhccChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 46999999999999998876542 355666666 99999977555
No 183
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=90.82 E-value=0.56 Score=52.40 Aligned_cols=44 Identities=7% Similarity=-0.195 Sum_probs=34.6
Q ss_pred ccccchhhcHHHHHHHHhcCCC-CceEEEEEec-chhhHHHHHhcC
Q 037018 19 CSSKTVKVKVKAVLVWLFMLDS-MWLQFLTAVA-YKTAFVADIYNN 62 (663)
Q Consensus 19 ~~~~G~~~~~~~i~~~L~~~~~-~~~~vi~i~G-GKTtla~~v~~~ 62 (663)
..++|.+..++.+.+.+..+.- +.+-+.|..| ||||+|+.+.+.
T Consensus 24 ~dliGq~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~ 69 (598)
T PRK09111 24 DDLIGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARA 69 (598)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHh
Confidence 3699999999999999887653 2355566666 999999998873
No 184
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=90.78 E-value=1.2 Score=38.83 Aligned_cols=15 Identities=13% Similarity=0.062 Sum_probs=12.5
Q ss_pred EEec-chhhHHHHHhc
Q 037018 47 TAVA-YKTAFVADIYN 61 (663)
Q Consensus 47 ~i~G-GKTtla~~v~~ 61 (663)
|-.| ||||+|+.+.+
T Consensus 5 G~~G~GKT~l~~~la~ 20 (132)
T PF00004_consen 5 GPPGTGKTTLARALAQ 20 (132)
T ss_dssp SSTTSSHHHHHHHHHH
T ss_pred CcCCCCeeHHHHHHHh
Confidence 3334 99999999999
No 185
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=90.59 E-value=0.21 Score=51.54 Aligned_cols=44 Identities=9% Similarity=0.009 Sum_probs=36.1
Q ss_pred cccchhhcHHHHHHHHhcCC---CCceEEEEEec----chhhHHHHHhcCC
Q 037018 20 SSKTVKVKVKAVLVWLFMLD---SMWLQFLTAVA----YKTAFVADIYNNN 63 (663)
Q Consensus 20 ~~~G~~~~~~~i~~~L~~~~---~~~~~vi~i~G----GKTtla~~v~~~~ 63 (663)
.++|.++.++++++++.... ...-++++++| ||||||+++.+..
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l 102 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGL 102 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 69999999999999996532 12467888888 9999999999844
No 186
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=90.22 E-value=0.54 Score=51.26 Aligned_cols=44 Identities=9% Similarity=-0.057 Sum_probs=30.3
Q ss_pred ccccchhhcHHHHHHHHhcC----------CCCceEEEEEec----chhhHHHHHhcC
Q 037018 19 CSSKTVKVKVKAVLVWLFML----------DSMWLQFLTAVA----YKTAFVADIYNN 62 (663)
Q Consensus 19 ~~~~G~~~~~~~i~~~L~~~----------~~~~~~vi~i~G----GKTtla~~v~~~ 62 (663)
..+.|.+..++++.+.+... .-...+-+-++| |||++|+++++.
T Consensus 182 ~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~e 239 (512)
T TIGR03689 182 ADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANS 239 (512)
T ss_pred HHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHh
Confidence 45778999999998876421 001223345555 999999999994
No 187
>PRK06921 hypothetical protein; Provisional
Probab=90.03 E-value=0.99 Score=45.11 Aligned_cols=21 Identities=19% Similarity=0.151 Sum_probs=15.9
Q ss_pred ceEEEEEec-chhhHHHHHhcC
Q 037018 42 WLQFLTAVA-YKTAFVADIYNN 62 (663)
Q Consensus 42 ~~~vi~i~G-GKTtla~~v~~~ 62 (663)
.+-+.|=.| |||+||.+|.+.
T Consensus 119 ~l~l~G~~G~GKThLa~aia~~ 140 (266)
T PRK06921 119 SIALLGQPGSGKTHLLTAAANE 140 (266)
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 355555555 999999999993
No 188
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=90.01 E-value=0.63 Score=49.24 Aligned_cols=42 Identities=17% Similarity=0.176 Sum_probs=29.5
Q ss_pred CCcEEEEEeCCCC-ChhhHHHHHhhCCCCCCCceEEEEEeCCC
Q 037018 138 NKKDFIVLDDVFD-DREIWNDLEKFLPDNQNGSRVLILVTDPF 179 (663)
Q Consensus 138 ~kr~LlVLDdv~~-~~~~~~~l~~~~~~~~~gskIiiT~r~~~ 179 (663)
+++-++++|++.. +....+.+...+-...++..+|++|.+..
T Consensus 116 ~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL~a~~~~ 158 (394)
T PRK07940 116 GRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCAPSPE 158 (394)
T ss_pred CCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEEEECChH
Confidence 4444778899988 56677888887766556777777766543
No 189
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=89.94 E-value=0.53 Score=45.34 Aligned_cols=19 Identities=5% Similarity=0.134 Sum_probs=16.6
Q ss_pred eEEEEEec----chhhHHHHHhc
Q 037018 43 LQFLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 43 ~~vi~i~G----GKTtla~~v~~ 61 (663)
.+++.|.| ||||+.+.+..
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHH
Confidence 48888999 99999999874
No 190
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=89.83 E-value=1.1 Score=43.01 Aligned_cols=42 Identities=12% Similarity=-0.084 Sum_probs=27.0
Q ss_pred cccchhhcHHHHHHHHhc--CCCCceEEEEEec----chhhHHHHHhc
Q 037018 20 SSKTVKVKVKAVLVWLFM--LDSMWLQFLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 20 ~~~G~~~~~~~i~~~L~~--~~~~~~~vi~i~G----GKTtla~~v~~ 61 (663)
.++|-+.-++.+.-++.. ...+.+.-+=.|| ||||||+-|.+
T Consensus 25 efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~ 72 (233)
T PF05496_consen 25 EFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIAN 72 (233)
T ss_dssp CS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHH
T ss_pred HccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHh
Confidence 689988877776655542 1112466677788 99999999999
No 191
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.79 E-value=2 Score=45.83 Aligned_cols=40 Identities=10% Similarity=-0.179 Sum_probs=30.5
Q ss_pred cccchhhcHHHHHHHHhcCCCCceEEEEEec----chhhHHHHHhc
Q 037018 20 SSKTVKVKVKAVLVWLFMLDSMWLQFLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 20 ~~~G~~~~~~~i~~~L~~~~~~~~~vi~i~G----GKTtla~~v~~ 61 (663)
.++|-+.-++.+.+++..+.- ...+-++| ||||+|+.+.+
T Consensus 17 eiiGq~~~~~~L~~~~~~~~~--~ha~lf~Gp~G~GKtt~A~~~a~ 60 (397)
T PRK14955 17 DITAQEHITRTIQNSLRMGRV--GHGYIFSGLRGVGKTTAARVFAK 60 (397)
T ss_pred hccChHHHHHHHHHHHHhCCc--ceeEEEECCCCCCHHHHHHHHHH
Confidence 688998888888888876532 23344566 99999999877
No 192
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=89.55 E-value=1.3 Score=43.97 Aligned_cols=83 Identities=22% Similarity=0.166 Sum_probs=47.7
Q ss_pred ceEEEEEec-chhhHHHHHhcCCCccccCCCCccccCCceeeccCCCcceEeCCCcchhHHHHHHHHHHHhCCCCCcchh
Q 037018 42 WLQFLTAVA-YKTAFVADIYNNNVDLSAMNPKLRVPKRFINKAFPVAFPVDVNCACNAQLNHILDDIIKSVMPPSRVNVI 120 (663)
Q Consensus 42 ~~~vi~i~G-GKTtla~~v~~~~~~~~~~~~~~~~~~~F~~~~~~~~~~v~vs~~~~~~~~~l~~~i~~~l~~~~~~~~~ 120 (663)
.+-..|=.| |||.||.++.+ ++.+.=-.+.+ ++ ..++.+++........
T Consensus 107 nl~l~G~~G~GKThLa~Ai~~------------~l~~~g~sv~f-----~~--------~~el~~~Lk~~~~~~~----- 156 (254)
T COG1484 107 NLVLLGPPGVGKTHLAIAIGN------------ELLKAGISVLF-----IT--------APDLLSKLKAAFDEGR----- 156 (254)
T ss_pred cEEEECCCCCcHHHHHHHHHH------------HHHHcCCeEEE-----EE--------HHHHHHHHHHHHhcCc-----
Confidence 455555556 99999999999 44533233444 33 6677777766655421
Q ss_pred hhhHhhHHHHHHHHhhcCCcEEEEEeCCCC-C-----hhhHHHHHhhC
Q 037018 121 ISEDYKLKTIILRDYLTNKKDFIVLDDVFD-D-----REIWNDLEKFL 162 (663)
Q Consensus 121 ~~~~~~l~~~~l~~~L~~kr~LlVLDdv~~-~-----~~~~~~l~~~~ 162 (663)
. ..++.+.++ +-=||||||+.. . ...|.++....
T Consensus 157 ------~-~~~l~~~l~-~~dlLIiDDlG~~~~~~~~~~~~~q~I~~r 196 (254)
T COG1484 157 ------L-EEKLLRELK-KVDLLIIDDIGYEPFSQEEADLLFQLISRR 196 (254)
T ss_pred ------h-HHHHHHHhh-cCCEEEEecccCccCCHHHHHHHHHHHHHH
Confidence 1 222333333 233779999987 2 34555544433
No 193
>PRK07667 uridine kinase; Provisional
Probab=89.47 E-value=0.43 Score=45.25 Aligned_cols=33 Identities=18% Similarity=0.098 Sum_probs=26.6
Q ss_pred HHHHHHHHhcCCCCceEEEEEec----chhhHHHHHhc
Q 037018 28 VKAVLVWLFMLDSMWLQFLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 28 ~~~i~~~L~~~~~~~~~vi~i~G----GKTtla~~v~~ 61 (663)
.+.+.+.+..... ...+|||.| ||||+|+.+..
T Consensus 3 ~~~~~~~~~~~~~-~~~iIgI~G~~gsGKStla~~L~~ 39 (193)
T PRK07667 3 TNELINIMKKHKE-NRFILGIDGLSRSGKTTFVANLKE 39 (193)
T ss_pred HHHHHHHHHhcCC-CCEEEEEECCCCCCHHHHHHHHHH
Confidence 4566777766665 458999999 99999999988
No 194
>PRK05642 DNA replication initiation factor; Validated
Probab=89.37 E-value=1.9 Score=42.28 Aligned_cols=37 Identities=22% Similarity=0.508 Sum_probs=22.0
Q ss_pred EEEEeCCCC--ChhhHHH-HHhhCCC-CCCCceEEEEEeCC
Q 037018 142 FIVLDDVFD--DREIWND-LEKFLPD-NQNGSRVLILVTDP 178 (663)
Q Consensus 142 LlVLDdv~~--~~~~~~~-l~~~~~~-~~~gskIiiT~r~~ 178 (663)
+||+||+.. ....|+. +...+.. ..+|.+||+|+...
T Consensus 100 ~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~ 140 (234)
T PRK05642 100 LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKS 140 (234)
T ss_pred EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCC
Confidence 678999974 1345544 4444432 23467888887644
No 195
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=89.34 E-value=1.4 Score=47.07 Aligned_cols=95 Identities=14% Similarity=0.110 Sum_probs=49.4
Q ss_pred EEEEEec----chhhHHHHHhcCCCccccCCCCccccCCceeeccCCCcceEeCCCcchhHHHHHHHHHHHhCC------
Q 037018 44 QFLTAVA----YKTAFVADIYNNNVDLSAMNPKLRVPKRFINKAFPVAFPVDVNCACNAQLNHILDDIIKSVMP------ 113 (663)
Q Consensus 44 ~vi~i~G----GKTtla~~v~~~~~~~~~~~~~~~~~~~F~~~~~~~~~~v~vs~~~~~~~~~l~~~i~~~l~~------ 113 (663)
+.++|+| |||||++.+.+.. +. +..++ +-+.....+ +.++.++.+..-..
T Consensus 159 qri~I~G~sG~GKTtLL~~I~~~~----------~~----d~~v~-----~~iGER~rE-v~ef~~~~l~~~~l~rsvvv 218 (442)
T PRK08927 159 QRMGIFAGSGVGKSVLLSMLARNA----------DA----DVSVI-----GLIGERGRE-VQEFLQDDLGPEGLARSVVV 218 (442)
T ss_pred CEEEEECCCCCCHHHHHHHHHhcc----------CC----CEEEE-----EEEecCcHH-HHHHHHHHhhccCceeEEEE
Confidence 4456666 9999999999844 21 34455 556555441 44555555443211
Q ss_pred --CCCcchhhhh-HhhHHHHHHHHhh--cCCcEEEEEeCCCCChhhHHHHH
Q 037018 114 --PSRVNVIISE-DYKLKTIILRDYL--TNKKDFIVLDDVFDDREIWNDLE 159 (663)
Q Consensus 114 --~~~~~~~~~~-~~~l~~~~l~~~L--~~kr~LlVLDdv~~~~~~~~~l~ 159 (663)
..+.+...-. .... +-.+-+++ ++|.+|+++||+-.-.+...++.
T Consensus 219 ~atsd~~~~~r~~a~~~-a~tiAEyfrd~G~~Vll~~DslTr~A~A~REis 268 (442)
T PRK08927 219 VATSDEPALMRRQAAYL-TLAIAEYFRDQGKDVLCLMDSVTRFAMAQREIG 268 (442)
T ss_pred EECCCCCHHHHHHHHHH-HHHHHHHHHHCCCcEEEEEeCcHHHHhhhhHHH
Confidence 1111111111 1222 22233444 48999999999976233344443
No 196
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=89.28 E-value=0.01 Score=55.97 Aligned_cols=81 Identities=17% Similarity=0.103 Sum_probs=47.4
Q ss_pred cCCCcccEEEecCCcCcccCccCCCCCCcCeEeccCCCCccchhhhcccccccEeeccCCcccccchhhhcCcCCcEEEc
Q 037018 369 KKFKHLRVLNLGSAILYQYPPGLENLFHLKYLKLNIPSLNCLPSLLCTLLNLQTLEMPASYIDHSPEGIWMMQKLMHLNF 448 (663)
Q Consensus 369 ~~l~~Lr~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~l 448 (663)
..++...+||++.+.+-.+...+..+..|..|+++.+.+..+|..++.+..+..+++..|.....|.++++.+.+++++.
T Consensus 39 ~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e~ 118 (326)
T KOG0473|consen 39 ASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNEQ 118 (326)
T ss_pred hccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhhh
Confidence 45555666666666554444445555555566666666666666666666666666655555556655666666666555
Q ss_pred c
Q 037018 449 G 449 (663)
Q Consensus 449 ~ 449 (663)
.
T Consensus 119 k 119 (326)
T KOG0473|consen 119 K 119 (326)
T ss_pred c
Confidence 5
No 197
>KOG3308 consensus Uncharacterized protein of the uridine kinase family [Nucleotide transport and metabolism]
Probab=89.19 E-value=0.29 Score=45.35 Aligned_cols=68 Identities=12% Similarity=0.063 Sum_probs=37.6
Q ss_pred ceEEEEEec----chhhHHHHHhcCCCccccC------CCCccccCCceeeccCCCcceEeCCCcchhHHHHHHHHHHHh
Q 037018 42 WLQFLTAVA----YKTAFVADIYNNNVDLSAM------NPKLRVPKRFINKAFPVAFPVDVNCACNAQLNHILDDIIKSV 111 (663)
Q Consensus 42 ~~~vi~i~G----GKTtla~~v~~~~~~~~~~------~~~~~~~~~F~~~~~~~~~~v~vs~~~~~~~~~l~~~i~~~l 111 (663)
+.-||||.| ||||||+.+-..-.-.+.. -|..+|........= .++-.+.+ ..+++++|...+
T Consensus 3 K~~ivgiSG~TnsGKTTLak~l~~~f~~~~lIhqDDFyKp~~Ei~v~~~n~~~-----wd~~esLd--m~~fl~~ia~~l 75 (225)
T KOG3308|consen 3 KTLIVGISGCTNSGKTTLAKSLHRFFPGCSLIHQDDFYKPENEIEVDYNNIDN-----WDLLESLD--MEKFLEKIATWL 75 (225)
T ss_pred eEEEEEeecccCCCHhHHHHHHHHHccCCeeeccccccCchhhhhcccCCcch-----hcchhhhh--HHHHHHHHHHHh
Confidence 578999999 9999999876532100000 011222222221111 23444556 778888887777
Q ss_pred CCCCC
Q 037018 112 MPPSR 116 (663)
Q Consensus 112 ~~~~~ 116 (663)
.....
T Consensus 76 ~~~~~ 80 (225)
T KOG3308|consen 76 DSRHN 80 (225)
T ss_pred cCccc
Confidence 76443
No 198
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=89.19 E-value=2.2 Score=49.58 Aligned_cols=43 Identities=9% Similarity=-0.177 Sum_probs=32.2
Q ss_pred cccchhhcHHHHHHHHhcCCCCc-eEEEEEec-chhhHHHHHhcC
Q 037018 20 SSKTVKVKVKAVLVWLFMLDSMW-LQFLTAVA-YKTAFVADIYNN 62 (663)
Q Consensus 20 ~~~G~~~~~~~i~~~L~~~~~~~-~~vi~i~G-GKTtla~~v~~~ 62 (663)
.++|-+.-++.|.+.+....-.. +-+.|--| ||||+|+.+.+.
T Consensus 16 eiiGqe~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~ 60 (824)
T PRK07764 16 EVIGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARS 60 (824)
T ss_pred HhcCcHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999988765322 33444444 999999998773
No 199
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.15 E-value=2.3 Score=47.85 Aligned_cols=42 Identities=10% Similarity=-0.145 Sum_probs=31.8
Q ss_pred cccchhhcHHHHHHHHhcCCCCc-eEEEEEec-chhhHHHHHhc
Q 037018 20 SSKTVKVKVKAVLVWLFMLDSMW-LQFLTAVA-YKTAFVADIYN 61 (663)
Q Consensus 20 ~~~G~~~~~~~i~~~L~~~~~~~-~~vi~i~G-GKTtla~~v~~ 61 (663)
.++|-+.-++.+.+++....-.. +-+.|=.| ||||+|+.+.+
T Consensus 17 eiiGq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~ 60 (585)
T PRK14950 17 ELVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAK 60 (585)
T ss_pred HhcCCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHH
Confidence 69999999999998887654311 23445555 99999999987
No 200
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=89.01 E-value=0.26 Score=42.46 Aligned_cols=17 Identities=6% Similarity=0.163 Sum_probs=14.9
Q ss_pred EEEEec----chhhHHHHHhc
Q 037018 45 FLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 45 vi~i~G----GKTtla~~v~~ 61 (663)
||+|.| ||||+|+.+.+
T Consensus 1 vI~I~G~~gsGKST~a~~La~ 21 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAE 21 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 567777 99999999988
No 201
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=88.96 E-value=0.46 Score=45.12 Aligned_cols=34 Identities=21% Similarity=0.466 Sum_probs=24.7
Q ss_pred CcEEEEEeCCCC-ChhhHHHHHhhCCCCCCCceEEEE
Q 037018 139 KKDFIVLDDVFD-DREIWNDLEKFLPDNQNGSRVLIL 174 (663)
Q Consensus 139 kr~LlVLDdv~~-~~~~~~~l~~~~~~~~~gskIiiT 174 (663)
++-+||+|+.+. +...+..+....+. .|+|+|..
T Consensus 93 ~~~vliVDEasmv~~~~~~~ll~~~~~--~~~klilv 127 (196)
T PF13604_consen 93 KKDVLIVDEASMVDSRQLARLLRLAKK--SGAKLILV 127 (196)
T ss_dssp STSEEEESSGGG-BHHHHHHHHHHS-T---T-EEEEE
T ss_pred cccEEEEecccccCHHHHHHHHHHHHh--cCCEEEEE
Confidence 345899999998 67788888887765 47788866
No 202
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=88.95 E-value=1.6 Score=39.65 Aligned_cols=51 Identities=6% Similarity=0.101 Sum_probs=33.7
Q ss_pred HHHHHHhhcCCcE-EEEEeCCCC----ChhhHHHHHhhCCCCCCCceEEEEEeCCC
Q 037018 129 TIILRDYLTNKKD-FIVLDDVFD----DREIWNDLEKFLPDNQNGSRVLILVTDPF 179 (663)
Q Consensus 129 ~~~l~~~L~~kr~-LlVLDdv~~----~~~~~~~l~~~~~~~~~gskIiiT~r~~~ 179 (663)
-...++.+....| |||||++.. .....+.+...+....++--||+|.|+..
T Consensus 84 ~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p 139 (159)
T cd00561 84 WAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAP 139 (159)
T ss_pred HHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 3445566655444 999999876 23345556655555556778999998753
No 203
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=88.94 E-value=0.76 Score=47.89 Aligned_cols=44 Identities=9% Similarity=-0.186 Sum_probs=33.4
Q ss_pred ccccchhhcHHHHHHHHhcCCCC-ceEEEEEec-chhhHHHHHhcC
Q 037018 19 CSSKTVKVKVKAVLVWLFMLDSM-WLQFLTAVA-YKTAFVADIYNN 62 (663)
Q Consensus 19 ~~~~G~~~~~~~i~~~L~~~~~~-~~~vi~i~G-GKTtla~~v~~~ 62 (663)
..++|-+.....+...+.....+ -+-+.|=.| ||||+|+.+.+.
T Consensus 23 ~~l~Gh~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~ 68 (351)
T PRK09112 23 TRLFGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANH 68 (351)
T ss_pred hhccCcHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHH
Confidence 46899999999999998876532 244555555 999999987773
No 204
>PTZ00301 uridine kinase; Provisional
Probab=88.87 E-value=0.31 Score=46.73 Aligned_cols=20 Identities=10% Similarity=0.059 Sum_probs=17.5
Q ss_pred ceEEEEEec----chhhHHHHHhc
Q 037018 42 WLQFLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 42 ~~~vi~i~G----GKTtla~~v~~ 61 (663)
+..+|||.| ||||||++|.+
T Consensus 2 ~~~iIgIaG~SgSGKTTla~~l~~ 25 (210)
T PTZ00301 2 PCTVIGISGASGSGKSSLSTNIVS 25 (210)
T ss_pred CCEEEEEECCCcCCHHHHHHHHHH
Confidence 457899999 99999998876
No 205
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=88.67 E-value=2.8 Score=39.01 Aligned_cols=49 Identities=12% Similarity=0.141 Sum_probs=29.2
Q ss_pred HHHHHhhcCCcEEEEEeCCCC--ChhhHHHHHhhCCCCCCCceEEEEEeCC
Q 037018 130 IILRDYLTNKKDFIVLDDVFD--DREIWNDLEKFLPDNQNGSRVLILVTDP 178 (663)
Q Consensus 130 ~~l~~~L~~kr~LlVLDdv~~--~~~~~~~l~~~~~~~~~gskIiiT~r~~ 178 (663)
-.+-+.+-.+.=+++||+... |....+.+...+....+|.-||++|.+.
T Consensus 107 v~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~ 157 (178)
T cd03247 107 LALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHL 157 (178)
T ss_pred HHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCH
Confidence 345566667777889999887 5554444444433222356677766543
No 206
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=88.63 E-value=2.2 Score=42.61 Aligned_cols=42 Identities=10% Similarity=0.009 Sum_probs=25.9
Q ss_pred cccchhhcHHHHH---HHHhc------C---CCCceEEEEEec----chhhHHHHHhc
Q 037018 20 SSKTVKVKVKAVL---VWLFM------L---DSMWLQFLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 20 ~~~G~~~~~~~i~---~~L~~------~---~~~~~~vi~i~G----GKTtla~~v~~ 61 (663)
+++|++.-+++|. .+... . ..+...-+-++| ||||+|+.+.+
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~ 64 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGK 64 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHH
Confidence 5888876666555 33311 1 112334455666 99999999987
No 207
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=88.53 E-value=4.3 Score=38.10 Aligned_cols=40 Identities=13% Similarity=0.264 Sum_probs=29.1
Q ss_pred CCcEEEEEeCCCC-ChhhHHHHHhhCCCCCCCceEEEEEeC
Q 037018 138 NKKDFIVLDDVFD-DREIWNDLEKFLPDNQNGSRVLILVTD 177 (663)
Q Consensus 138 ~kr~LlVLDdv~~-~~~~~~~l~~~~~~~~~gskIiiT~r~ 177 (663)
+.+-++|+||+.. ....++.+...+....+...+|+++.+
T Consensus 95 ~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~ 135 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPS 135 (188)
T ss_pred CCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECC
Confidence 4556889999987 466788888887765556777776653
No 208
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=88.36 E-value=0.99 Score=49.89 Aligned_cols=71 Identities=17% Similarity=0.170 Sum_probs=42.8
Q ss_pred eEEEEEec-chhhHHHHHhcCCCccccCCCCccccCCceeeccCCCcceEeCCCcchhHHHHHHHHHHHhCCCCCcchhh
Q 037018 43 LQFLTAVA-YKTAFVADIYNNNVDLSAMNPKLRVPKRFINKAFPVAFPVDVNCACNAQLNHILDDIIKSVMPPSRVNVII 121 (663)
Q Consensus 43 ~~vi~i~G-GKTtla~~v~~~~~~~~~~~~~~~~~~~F~~~~~~~~~~v~vs~~~~~~~~~l~~~i~~~l~~~~~~~~~~ 121 (663)
+-.-|--| |||+||+++++.. . +++.-...+ |+.+.-......++|+.+
T Consensus 434 Ill~G~~GsGKT~L~kal~~~~----------~-k~~~~hv~~-----v~Cs~l~~~~~e~iQk~l-------------- 483 (952)
T KOG0735|consen 434 ILLNGPKGSGKTNLVKALFDYY----------S-KDLIAHVEI-----VSCSTLDGSSLEKIQKFL-------------- 483 (952)
T ss_pred EEEeCCCCCCHhHHHHHHHHHh----------c-cccceEEEE-----EechhccchhHHHHHHHH--------------
Confidence 33333344 9999999999966 3 334444445 555544442344555444
Q ss_pred hhHhhHHHHHHHHhhcCCcEEEEEeCCCC
Q 037018 122 SEDYKLKTIILRDYLTNKKDFIVLDDVFD 150 (663)
Q Consensus 122 ~~~~~l~~~~l~~~L~~kr~LlVLDdv~~ 150 (663)
-..+.+.+.-..=+|||||+.-
T Consensus 484 -------~~vfse~~~~~PSiIvLDdld~ 505 (952)
T KOG0735|consen 484 -------NNVFSEALWYAPSIIVLDDLDC 505 (952)
T ss_pred -------HHHHHHHHhhCCcEEEEcchhh
Confidence 2334455566777899999854
No 209
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=88.36 E-value=2.3 Score=41.62 Aligned_cols=47 Identities=9% Similarity=0.054 Sum_probs=31.2
Q ss_pred ceEEEEEec----chhhHHHHHhcCCCccccCCCCccccC----CceeeccCCCcceEeCCCcchhHHHHHH
Q 037018 42 WLQFLTAVA----YKTAFVADIYNNNVDLSAMNPKLRVPK----RFINKAFPVAFPVDVNCACNAQLNHILD 105 (663)
Q Consensus 42 ~~~vi~i~G----GKTtla~~v~~~~~~~~~~~~~~~~~~----~F~~~~~~~~~~v~vs~~~~~~~~~l~~ 105 (663)
.-.++.|+| ||||||.++.-.. .... .-...+| ++....++ ..++.+
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~l~~~~----------~~~~~~~g~~~~viy-----i~~e~~~~--~~rl~~ 72 (235)
T cd01123 18 TGSITEIFGEFGSGKTQLCHQLAVTV----------QLPIELGGLEGKAVY-----IDTEGTFR--PERLVQ 72 (235)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHe----------eCccccCCCCccEEE-----EeCCCCcC--HHHHHH
Confidence 457778888 9999999987432 1122 2357788 87777777 655544
No 210
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=88.32 E-value=0.85 Score=43.40 Aligned_cols=46 Identities=17% Similarity=0.156 Sum_probs=30.4
Q ss_pred HHHHHHhhcCCcEEEEEeCCCCChhhHHHHHhhCCCCCCCceEEEEEeCC
Q 037018 129 TIILRDYLTNKKDFIVLDDVFDDREIWNDLEKFLPDNQNGSRVLILVTDP 178 (663)
Q Consensus 129 ~~~l~~~L~~kr~LlVLDdv~~~~~~~~~l~~~~~~~~~gskIiiT~r~~ 178 (663)
...++..++...=.+++|++.+ .+.++...... ..|-.|+.|+-..
T Consensus 64 ~~~i~~aLr~~pd~ii~gEird-~e~~~~~l~~a---~~G~~v~~t~Ha~ 109 (198)
T cd01131 64 ENALKAALRQDPDVILVGEMRD-LETIRLALTAA---ETGHLVMSTLHTN 109 (198)
T ss_pred HHHHHHHhcCCcCEEEEcCCCC-HHHHHHHHHHH---HcCCEEEEEecCC
Confidence 4556777777777999999988 77666655433 2355566665433
No 211
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=88.03 E-value=1.7 Score=46.30 Aligned_cols=48 Identities=25% Similarity=0.223 Sum_probs=31.5
Q ss_pred HHHHHHhhcCCcEEEEEeCCCC--ChhhHHHHHhhCC--CCCCCceEEEEEe
Q 037018 129 TIILRDYLTNKKDFIVLDDVFD--DREIWNDLEKFLP--DNQNGSRVLILVT 176 (663)
Q Consensus 129 ~~~l~~~L~~kr~LlVLDdv~~--~~~~~~~l~~~~~--~~~~gskIiiT~r 176 (663)
...+-+.+-+..+|||||.-.. |.+-=..+..++. ...-|.-|+||+|
T Consensus 480 RIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHR 531 (580)
T COG4618 480 RIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHR 531 (580)
T ss_pred HHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecC
Confidence 4567889999999999999887 4333333444333 1233666777766
No 212
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=87.90 E-value=0.33 Score=46.09 Aligned_cols=17 Identities=12% Similarity=0.149 Sum_probs=15.7
Q ss_pred EEEEec----chhhHHHHHhc
Q 037018 45 FLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 45 vi~i~G----GKTtla~~v~~ 61 (663)
||||.| ||||+|+++..
T Consensus 1 IIgI~G~sgSGKTTla~~L~~ 21 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQ 21 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 688988 99999999988
No 213
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=87.81 E-value=1.8 Score=45.42 Aligned_cols=41 Identities=7% Similarity=-0.204 Sum_probs=31.5
Q ss_pred cccchhhcHHHHHHHHhcCCCCceEEEEEec----chhhHHHHHhcC
Q 037018 20 SSKTVKVKVKAVLVWLFMLDSMWLQFLTAVA----YKTAFVADIYNN 62 (663)
Q Consensus 20 ~~~G~~~~~~~i~~~L~~~~~~~~~vi~i~G----GKTtla~~v~~~ 62 (663)
.++|.+..++.+.+++....- ...+=++| ||||+|+.+.+.
T Consensus 15 ~iig~~~~~~~l~~~~~~~~~--~~~~Ll~G~~G~GKt~~a~~la~~ 59 (355)
T TIGR02397 15 DVIGQEHIVQTLKNAIKNGRI--AHAYLFSGPRGTGKTSIARIFAKA 59 (355)
T ss_pred hccCcHHHHHHHHHHHHcCCC--CeEEEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999976543 23344555 999999988773
No 214
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=87.78 E-value=3 Score=45.89 Aligned_cols=122 Identities=16% Similarity=0.185 Sum_probs=65.4
Q ss_pred cHHHHHHHHhcCCCCceEEEEEec----chhh-HHHHHhcCCCccccCCCCccccCCceeeccCCCcceEeCCCcchhHH
Q 037018 27 KVKAVLVWLFMLDSMWLQFLTAVA----YKTA-FVADIYNNNVDLSAMNPKLRVPKRFINKAFPVAFPVDVNCACNAQLN 101 (663)
Q Consensus 27 ~~~~i~~~L~~~~~~~~~vi~i~G----GKTt-la~~v~~~~~~~~~~~~~~~~~~~F~~~~~~~~~~v~vs~~~~~~~~ 101 (663)
..+++++.+.+. +||-|+| |||| |||.+|.+- |...-. +.+.++..--..
T Consensus 360 ~R~~ll~~ir~n-----~vvvivgETGSGKTTQl~QyL~edG---------------Y~~~Gm-----IGcTQPRRvAAi 414 (1042)
T KOG0924|consen 360 CRDQLLSVIREN-----QVVVIVGETGSGKTTQLAQYLYEDG---------------YADNGM-----IGCTQPRRVAAI 414 (1042)
T ss_pred HHHHHHHHHhhC-----cEEEEEecCCCCchhhhHHHHHhcc---------------cccCCe-----eeecCchHHHHH
Confidence 345566655544 4555666 9998 888899865 222223 556666551134
Q ss_pred HHHHHHHHHhCCCC--------C---c----chhhhh-HhhHHHHHHHHhhcC----CcEEEEEeCCCCChhhHHHHHhh
Q 037018 102 HILDDIIKSVMPPS--------R---V----NVIISE-DYKLKTIILRDYLTN----KKDFIVLDDVFDDREIWNDLEKF 161 (663)
Q Consensus 102 ~l~~~i~~~l~~~~--------~---~----~~~~~~-~~~l~~~~l~~~L~~----kr~LlVLDdv~~~~~~~~~l~~~ 161 (663)
.+.+.+...++..- . . ..+..+ ..-| |++.|.+ |==.||+|....+.-.-+-+.+.
T Consensus 415 SVAkrVa~EM~~~lG~~VGYsIRFEdvT~~~T~IkymTDGiL----LrEsL~d~~L~kYSviImDEAHERslNtDilfGl 490 (1042)
T KOG0924|consen 415 SVAKRVAEEMGVTLGDTVGYSIRFEDVTSEDTKIKYMTDGIL----LRESLKDRDLDKYSVIIMDEAHERSLNTDILFGL 490 (1042)
T ss_pred HHHHHHHHHhCCccccccceEEEeeecCCCceeEEEeccchH----HHHHhhhhhhhheeEEEechhhhcccchHHHHHH
Confidence 45566666663311 0 0 012333 2222 4555554 44478899987632233333332
Q ss_pred CC---CCCCCceEEEEEeC
Q 037018 162 LP---DNQNGSRVLILVTD 177 (663)
Q Consensus 162 ~~---~~~~gskIiiT~r~ 177 (663)
+. .....-|+|||+++
T Consensus 491 lk~~larRrdlKliVtSAT 509 (1042)
T KOG0924|consen 491 LKKVLARRRDLKLIVTSAT 509 (1042)
T ss_pred HHHHHHhhccceEEEeecc
Confidence 22 33458899999764
No 215
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=87.50 E-value=3 Score=46.85 Aligned_cols=42 Identities=12% Similarity=-0.157 Sum_probs=30.7
Q ss_pred cccchhhcHHHHHHHHhcCCCC-ceEEEEEec-chhhHHHHHhc
Q 037018 20 SSKTVKVKVKAVLVWLFMLDSM-WLQFLTAVA-YKTAFVADIYN 61 (663)
Q Consensus 20 ~~~G~~~~~~~i~~~L~~~~~~-~~~vi~i~G-GKTtla~~v~~ 61 (663)
.++|-+.-++.+.+.+..+.-. .+-+-|--| ||||+|+.+.+
T Consensus 17 eivGQe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk 60 (620)
T PRK14954 17 DITAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAK 60 (620)
T ss_pred HhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999988765431 233444444 99999998877
No 216
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=87.49 E-value=4.2 Score=40.66 Aligned_cols=43 Identities=19% Similarity=0.204 Sum_probs=30.2
Q ss_pred HHHhhc-CCcEEEEEeCCCCChhhHHHHHhhCCCCCCCceEEEEEeCC
Q 037018 132 LRDYLT-NKKDFIVLDDVFDDREIWNDLEKFLPDNQNGSRVLILVTDP 178 (663)
Q Consensus 132 l~~~L~-~kr~LlVLDdv~~~~~~~~~l~~~~~~~~~gskIiiT~r~~ 178 (663)
+...++ ...=++++|.+.. .+.+..+...+. .|..||+|+-+.
T Consensus 186 ~~~~i~~~~P~villDE~~~-~e~~~~l~~~~~---~G~~vI~ttH~~ 229 (270)
T TIGR02858 186 MMMLIRSMSPDVIVVDEIGR-EEDVEALLEALH---AGVSIIATAHGR 229 (270)
T ss_pred HHHHHHhCCCCEEEEeCCCc-HHHHHHHHHHHh---CCCEEEEEechh
Confidence 344443 4777889999988 777877777653 477788887643
No 217
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=87.38 E-value=2.3 Score=39.61 Aligned_cols=49 Identities=20% Similarity=0.351 Sum_probs=30.3
Q ss_pred HHHHHHhhcCCcEEEEEeCCCC--ChhhHHHHHhhCCCC-CC-CceEEEEEeC
Q 037018 129 TIILRDYLTNKKDFIVLDDVFD--DREIWNDLEKFLPDN-QN-GSRVLILVTD 177 (663)
Q Consensus 129 ~~~l~~~L~~kr~LlVLDdv~~--~~~~~~~l~~~~~~~-~~-gskIiiT~r~ 177 (663)
.-.+-+.+-...=+++||+.-. |....+.+...+... .+ |.-||++|.+
T Consensus 105 rl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~ 157 (180)
T cd03214 105 RVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHD 157 (180)
T ss_pred HHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 3445566667777889999886 555555665555422 22 5666666554
No 218
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=87.30 E-value=2.4 Score=45.03 Aligned_cols=44 Identities=5% Similarity=-0.099 Sum_probs=30.1
Q ss_pred ccccchhhcHHHHHHHHhc---C-------CCCceEEEEEec----chhhHHHHHhcC
Q 037018 19 CSSKTVKVKVKAVLVWLFM---L-------DSMWLQFLTAVA----YKTAFVADIYNN 62 (663)
Q Consensus 19 ~~~~G~~~~~~~i~~~L~~---~-------~~~~~~vi~i~G----GKTtla~~v~~~ 62 (663)
..+.|.+..++++.+.+.. . +-...+-|-++| |||++|+++.+.
T Consensus 145 ~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~ 202 (398)
T PTZ00454 145 SDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHH 202 (398)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh
Confidence 3578999999888876631 1 101233455556 999999999993
No 219
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=87.17 E-value=3.8 Score=45.04 Aligned_cols=42 Identities=12% Similarity=-0.177 Sum_probs=31.0
Q ss_pred cccchhhcHHHHHHHHhcCCCCc-eEEEEEec-chhhHHHHHhc
Q 037018 20 SSKTVKVKVKAVLVWLFMLDSMW-LQFLTAVA-YKTAFVADIYN 61 (663)
Q Consensus 20 ~~~G~~~~~~~i~~~L~~~~~~~-~~vi~i~G-GKTtla~~v~~ 61 (663)
.++|-+.-++.+...+..+.-+. +-+.|-.| ||||+|+.+.+
T Consensus 15 eiiGqe~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk 58 (535)
T PRK08451 15 ELIGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFAR 58 (535)
T ss_pred HccCcHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHH
Confidence 68999999999999987664322 23444445 99999998776
No 220
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=87.08 E-value=2.5 Score=45.21 Aligned_cols=20 Identities=20% Similarity=0.172 Sum_probs=15.5
Q ss_pred EEEEEec----chhhHHHHHhcCC
Q 037018 44 QFLTAVA----YKTAFVADIYNNN 63 (663)
Q Consensus 44 ~vi~i~G----GKTtla~~v~~~~ 63 (663)
..++|+| |||||++.+....
T Consensus 166 qri~I~G~SGsGKTTLL~~Ia~l~ 189 (450)
T PRK06002 166 QRIGIFAGSGVGKSTLLAMLARAD 189 (450)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 4566666 9999999998744
No 221
>PRK08149 ATP synthase SpaL; Validated
Probab=86.94 E-value=2 Score=45.72 Aligned_cols=85 Identities=11% Similarity=0.096 Sum_probs=44.9
Q ss_pred EEEEEec----chhhHHHHHhcCCCccccCCCCccccCCceeeccCCCcceEeCCC-cchhHHHHHHHHHHHhCC-----
Q 037018 44 QFLTAVA----YKTAFVADIYNNNVDLSAMNPKLRVPKRFINKAFPVAFPVDVNCA-CNAQLNHILDDIIKSVMP----- 113 (663)
Q Consensus 44 ~vi~i~G----GKTtla~~v~~~~~~~~~~~~~~~~~~~F~~~~~~~~~~v~vs~~-~~~~~~~l~~~i~~~l~~----- 113 (663)
..++|+| |||||++.+.+.. +. +..+. ..+... .+ ..++.++.......
T Consensus 152 q~i~I~G~sG~GKTTLl~~i~~~~----------~~----dv~v~-----g~Ig~rg~e--v~e~~~~~l~~~~~~~~~v 210 (428)
T PRK08149 152 QRMGIFASAGCGKTSLMNMLIEHS----------EA----DVFVI-----GLIGERGRE--VTEFVESLRASSRREKCVL 210 (428)
T ss_pred CEEEEECCCCCChhHHHHHHhcCC----------CC----CeEEE-----EEEeeCCcc--HHHHHHHHhhcccccceEE
Confidence 3455555 9999999999854 22 23333 333333 33 55666666654321
Q ss_pred ---CCCcchhhhh-HhhHHHHHHHHhh--cCCcEEEEEeCCCC
Q 037018 114 ---PSRVNVIISE-DYKLKTIILRDYL--TNKKDFIVLDDVFD 150 (663)
Q Consensus 114 ---~~~~~~~~~~-~~~l~~~~l~~~L--~~kr~LlVLDdv~~ 150 (663)
..+.+..... .... +..+-+++ ++|.+||++||+-.
T Consensus 211 V~~~sd~p~~~r~~a~~~-a~tiAE~fr~~G~~Vll~~DslTr 252 (428)
T PRK08149 211 VYATSDFSSVDRCNAALV-ATTVAEYFRDQGKRVVLFIDSMTR 252 (428)
T ss_pred EEECCCCCHHHHHhHHHH-HHHHHHHHHHcCCCEEEEccchHH
Confidence 1111111111 1112 22233333 48999999999976
No 222
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=86.67 E-value=3 Score=44.44 Aligned_cols=95 Identities=7% Similarity=0.100 Sum_probs=49.8
Q ss_pred EEEEEec----chhhHHHHHhcCCCccccCCCCccccCCceeeccCCCcceEeCCCcchhHHHHHHHHHHHhCCC-----
Q 037018 44 QFLTAVA----YKTAFVADIYNNNVDLSAMNPKLRVPKRFINKAFPVAFPVDVNCACNAQLNHILDDIIKSVMPP----- 114 (663)
Q Consensus 44 ~vi~i~G----GKTtla~~v~~~~~~~~~~~~~~~~~~~F~~~~~~~~~~v~vs~~~~~~~~~l~~~i~~~l~~~----- 114 (663)
..++|+| |||||++.+.+.. . .+..++ +-+.+... .+.++.++++..-..+
T Consensus 163 qrigI~G~sG~GKSTLL~~I~~~~------------~--~dv~Vi-----~lIGER~r-Ev~efi~~~l~~~~l~rtvvv 222 (444)
T PRK08972 163 QRMGLFAGSGVGKSVLLGMMTRGT------------T--ADVIVV-----GLVGERGR-EVKEFIEEILGEEGRARSVVV 222 (444)
T ss_pred CEEEEECCCCCChhHHHHHhccCC------------C--CCEEEE-----EEEcCChH-HHHHHHHHhhccCCcccEEEE
Confidence 3455555 9999999999833 1 245556 65655544 1445666654432111
Q ss_pred ---CCcchhhhh-HhhHHHHHHHHhh--cCCcEEEEEeCCCCChhhHHHHH
Q 037018 115 ---SRVNVIISE-DYKLKTIILRDYL--TNKKDFIVLDDVFDDREIWNDLE 159 (663)
Q Consensus 115 ---~~~~~~~~~-~~~l~~~~l~~~L--~~kr~LlVLDdv~~~~~~~~~l~ 159 (663)
.+.+...-. .... +-.+-+++ +++.+|+++||+-.-.+.+.++.
T Consensus 223 ~atsd~p~~~R~~a~~~-A~tiAEyfrd~G~~VLl~~DslTR~A~A~REIs 272 (444)
T PRK08972 223 AAPADTSPLMRLKGCET-ATTIAEYFRDQGLNVLLLMDSLTRYAQAQREIA 272 (444)
T ss_pred EECCCCCHHHHHHHHHH-HHHHHHHHHHcCCCEEEEEcChHHHHHHHHHHH
Confidence 111111111 1111 22233333 58999999999976344444443
No 223
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=86.55 E-value=2 Score=41.36 Aligned_cols=96 Identities=9% Similarity=0.156 Sum_probs=49.8
Q ss_pred ceEEEEEec-chhhHHHHHhcCCCccccCCCCccccCCceeeccCCCcceEeCCCcchhHHHHHHHHHHHhC--------
Q 037018 42 WLQFLTAVA-YKTAFVADIYNNNVDLSAMNPKLRVPKRFINKAFPVAFPVDVNCACNAQLNHILDDIIKSVM-------- 112 (663)
Q Consensus 42 ~~~vi~i~G-GKTtla~~v~~~~~~~~~~~~~~~~~~~F~~~~~~~~~~v~vs~~~~~~~~~l~~~i~~~l~-------- 112 (663)
+..++|=.| |||+|++.+.++. . =+..++ +-+.+... .+.++.+++...-.
T Consensus 17 r~~I~g~~g~GKt~Ll~~i~~~~------------~--~d~~V~-----~~iGer~~-Ev~~~~~~~~~~~~~~~t~vv~ 76 (215)
T PF00006_consen 17 RIGIFGGAGVGKTVLLQEIANNQ------------D--ADVVVY-----ALIGERGR-EVTEFIEELKGEGALERTVVVA 76 (215)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHC------------T--TTEEEE-----EEESECHH-HHHHHHHHHHHTTGGGGEEEEE
T ss_pred EEEEEcCcccccchhhHHHHhcc------------c--ccceee-----eeccccch-hHHHHHHHHhhccccccccccc
Confidence 444444444 9999999998844 2 122366 76765533 15666666644310
Q ss_pred -CCCCcchhhhh----HhhHHHHHHHHhhcCCcEEEEEeCCCCChhhHHHHHh
Q 037018 113 -PPSRVNVIISE----DYKLKTIILRDYLTNKKDFIVLDDVFDDREIWNDLEK 160 (663)
Q Consensus 113 -~~~~~~~~~~~----~~~l~~~~l~~~L~~kr~LlVLDdv~~~~~~~~~l~~ 160 (663)
..++....... .-.. ++.+++ ++|.+|+++||+..-.+.+.++..
T Consensus 77 ~t~~~~~~~r~~~~~~a~t~-AEyfrd--~G~dVlli~Dsltr~a~A~reis~ 126 (215)
T PF00006_consen 77 ATSDEPPAARYRAPYTALTI-AEYFRD--QGKDVLLIIDSLTRWAQAYREISL 126 (215)
T ss_dssp EETTS-HHHHHHHHHHHHHH-HHHHHH--TTSEEEEEEETHHHHHHHHHHHHH
T ss_pred ccchhhHHHHhhhhccchhh-hHHHhh--cCCceeehhhhhHHHHHHHHhhhc
Confidence 01111111111 1112 233333 789999999998652333444443
No 224
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=86.43 E-value=3 Score=41.44 Aligned_cols=26 Identities=19% Similarity=0.414 Sum_probs=19.7
Q ss_pred cCCcEEEEEeCCCCChhhHHHHHhhC
Q 037018 137 TNKKDFIVLDDVFDDREIWNDLEKFL 162 (663)
Q Consensus 137 ~~kr~LlVLDdv~~~~~~~~~l~~~~ 162 (663)
++|.+|||+||+-.-.+.|.++...+
T Consensus 159 ~G~~Vlvl~DslTr~A~A~rEisl~~ 184 (274)
T cd01132 159 NGKHALIIYDDLSKQAVAYRQMSLLL 184 (274)
T ss_pred CCCCEEEEEcChHHHHHHHHHHHHhc
Confidence 58999999999976355677766544
No 225
>PRK12678 transcription termination factor Rho; Provisional
Probab=86.26 E-value=1.5 Score=47.78 Aligned_cols=89 Identities=17% Similarity=0.071 Sum_probs=45.7
Q ss_pred EEEEEec----chhhHHHHHhcCCCccccCCCCccccC-CceeeccCCCcceEeCCCcchhHHHHHHHHHHHhCCC-CCc
Q 037018 44 QFLTAVA----YKTAFVADIYNNNVDLSAMNPKLRVPK-RFINKAFPVAFPVDVNCACNAQLNHILDDIIKSVMPP-SRV 117 (663)
Q Consensus 44 ~vi~i~G----GKTtla~~v~~~~~~~~~~~~~~~~~~-~F~~~~~~~~~~v~vs~~~~~~~~~l~~~i~~~l~~~-~~~ 117 (663)
+-.+|+| |||||++.|.+ .+.. +=++.++ ++-|.+... -+.++.+.+-..+-.. .+.
T Consensus 417 QR~LIvgpp~aGKTtLL~~IAn------------~i~~n~~~~~~i----vvLIgERpe-EVtdm~rsVkgeVVasT~D~ 479 (672)
T PRK12678 417 QRGLIVSPPKAGKTTILQNIAN------------AITTNNPECHLM----VVLVDERPE-EVTDMQRSVKGEVIASTFDR 479 (672)
T ss_pred CEeEEeCCCCCCHHHHHHHHHH------------HHhhcCCCeEEE----EEEEeCchh-hHHHHHHhccceEEEECCCC
Confidence 3456666 99999999999 4422 2233333 144444332 1333433331111111 111
Q ss_pred chhhhh-HhhHHHHHHHHhh--cCCcEEEEEeCCCC
Q 037018 118 NVIISE-DYKLKTIILRDYL--TNKKDFIVLDDVFD 150 (663)
Q Consensus 118 ~~~~~~-~~~l~~~~l~~~L--~~kr~LlVLDdv~~ 150 (663)
+..... ...+ ...+-+++ .++.+||++|++-.
T Consensus 480 p~~~~~~~a~~-ai~~Ae~fre~G~dVlillDSlTR 514 (672)
T PRK12678 480 PPSDHTTVAEL-AIERAKRLVELGKDVVVLLDSITR 514 (672)
T ss_pred CHHHHHHHHHH-HHHHHHHHHHcCCCEEEEEeCchH
Confidence 111122 4444 45555666 67999999999875
No 226
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=86.24 E-value=3.1 Score=41.40 Aligned_cols=103 Identities=13% Similarity=0.185 Sum_probs=55.4
Q ss_pred CceEEEEEec-chhhHHHHHhcCCCccccCCCCccc--cCCceeeccCCCcceEeCCCcchhHHHHHHHHHHHhCCC---
Q 037018 41 MWLQFLTAVA-YKTAFVADIYNNNVDLSAMNPKLRV--PKRFINKAFPVAFPVDVNCACNAQLNHILDDIIKSVMPP--- 114 (663)
Q Consensus 41 ~~~~vi~i~G-GKTtla~~v~~~~~~~~~~~~~~~~--~~~F~~~~~~~~~~v~vs~~~~~~~~~l~~~i~~~l~~~--- 114 (663)
++..++|-.| |||||+..|.++. .+ ++.-+.+++ +-+.+... ...++.+++...=..+
T Consensus 70 QR~gIfgg~GvGKt~L~~~i~~~~----------~~~~~~~~~v~V~-----~~IGeR~r-ev~e~~~~~~~~~~l~~tv 133 (276)
T cd01135 70 QKIPIFSGSGLPHNELAAQIARQA----------GVVGEEENFAVVF-----AAMGITME-DARFFKDDFEETGALERVV 133 (276)
T ss_pred CEEEeecCCCCChhHHHHHHHHhh----------hccccCCCCEEEE-----EEeccccH-HHHHHHHHhhhcCCcceEE
Confidence 3444444344 9999999998854 21 123467778 77776554 1555666665532111
Q ss_pred -----CCcchhhhh-HhhHHHHHHHHhh---cCCcEEEEEeCCCCChhhHHHHHh
Q 037018 115 -----SRVNVIISE-DYKLKTIILRDYL---TNKKDFIVLDDVFDDREIWNDLEK 160 (663)
Q Consensus 115 -----~~~~~~~~~-~~~l~~~~l~~~L---~~kr~LlVLDdv~~~~~~~~~l~~ 160 (663)
.+.+..... .-.. .-.+-+++ ++|++|+++||+..-.+.+.++.-
T Consensus 134 ~v~~t~~~~~~~r~~a~~~-a~aiAEyfrd~~g~~VLl~~D~ltr~A~A~rEisl 187 (276)
T cd01135 134 LFLNLANDPTIERIITPRM-ALTTAEYLAYEKGKHVLVILTDMTNYAEALREISA 187 (276)
T ss_pred EEEecCCCCHHHHHHHHHH-HHHHHHHHHhccCCeEEEEEcChhHHHHHHHHHHh
Confidence 111111111 1112 22334444 378999999999763444445543
No 227
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=86.23 E-value=2.9 Score=46.34 Aligned_cols=146 Identities=10% Similarity=0.021 Sum_probs=83.7
Q ss_pred ccccchhhcHHHHHHHHhc---C-CC-CceEEEEEec-chhhHHHHHhcCCCccccCCCCccccCCceeeccCCCcceEe
Q 037018 19 CSSKTVKVKVKAVLVWLFM---L-DS-MWLQFLTAVA-YKTAFVADIYNNNVDLSAMNPKLRVPKRFINKAFPVAFPVDV 92 (663)
Q Consensus 19 ~~~~G~~~~~~~i~~~L~~---~-~~-~~~~vi~i~G-GKTtla~~v~~~~~~~~~~~~~~~~~~~F~~~~~~~~~~v~v 92 (663)
.++-+|+.+..+|...+.. + .. .-+.|-|+-| |||..+..|-+.... + ..++.-....+ |++
T Consensus 396 ~sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~---~----s~~~e~p~f~y-----veI 463 (767)
T KOG1514|consen 396 ESLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQT---S----SAQKELPKFDY-----VEI 463 (767)
T ss_pred ccccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHH---H----HhhcCCCCccE-----EEE
Confidence 3677999999999988854 2 21 1234444444 999999999984300 0 01111222223 333
Q ss_pred CC--CcchhHHHHHHHHHHHhCCCCCcchhhhhHhhHHHHHHHHhhcCCcEEEEEeCCCC-ChhhHHHHHhhCCC-CCCC
Q 037018 93 NC--ACNAQLNHILDDIIKSVMPPSRVNVIISEDYKLKTIILRDYLTNKKDFIVLDDVFD-DREIWNDLEKFLPD-NQNG 168 (663)
Q Consensus 93 s~--~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~~l~~~L~~kr~LlVLDdv~~-~~~~~~~l~~~~~~-~~~g 168 (663)
.. -.. ..++...|+.++.+....+... ...++.......=+.+..+|++|++.. -....+.+...|.| ..++
T Consensus 464 Ngm~l~~--~~~~Y~~I~~~lsg~~~~~~~a--l~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~ 539 (767)
T KOG1514|consen 464 NGLRLAS--PREIYEKIWEALSGERVTWDAA--LEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKN 539 (767)
T ss_pred cceeecC--HHHHHHHHHHhcccCcccHHHH--HHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCC
Confidence 32 234 7899999999999876544211 223311111111224668888888766 22335667777776 4678
Q ss_pred ceEEEE-EeCCCC
Q 037018 169 SRVLIL-VTDPFL 180 (663)
Q Consensus 169 skIiiT-~r~~~~ 180 (663)
||.+|. ..+-++
T Consensus 540 sKLvvi~IaNTmd 552 (767)
T KOG1514|consen 540 SKLVVIAIANTMD 552 (767)
T ss_pred CceEEEEeccccc
Confidence 887776 344333
No 228
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=86.22 E-value=2.5 Score=45.11 Aligned_cols=20 Identities=20% Similarity=0.169 Sum_probs=15.4
Q ss_pred EEEEEec----chhhHHHHHhcCC
Q 037018 44 QFLTAVA----YKTAFVADIYNNN 63 (663)
Q Consensus 44 ~vi~i~G----GKTtla~~v~~~~ 63 (663)
..++|+| |||||++.+.+..
T Consensus 156 qrigI~G~sG~GKSTLL~~I~~~~ 179 (433)
T PRK07594 156 QRVGIFSAPGVGKSTLLAMLCNAP 179 (433)
T ss_pred CEEEEECCCCCCccHHHHHhcCCC
Confidence 4455655 9999999999844
No 229
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=85.72 E-value=2.9 Score=41.02 Aligned_cols=78 Identities=21% Similarity=0.280 Sum_probs=43.3
Q ss_pred HHHHHHHHHhCCCCCcc-hhhhh-HhhHHHHHHHHhhcCCcEEEEEeCCCC--ChhhHHHHHhhCCC-CCCCceEEEEEe
Q 037018 102 HILDDIIKSVMPPSRVN-VIISE-DYKLKTIILRDYLTNKKDFIVLDDVFD--DREIWNDLEKFLPD-NQNGSRVLILVT 176 (663)
Q Consensus 102 ~l~~~i~~~l~~~~~~~-~~~~~-~~~l~~~~l~~~L~~kr~LlVLDdv~~--~~~~~~~l~~~~~~-~~~gskIiiT~r 176 (663)
+..++.++.++..+-.. ++.+. ..+.+.-.+-+.|-.+.=|+|||.--. |...-..+..-+.. ...|.-|+++|-
T Consensus 118 ~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtH 197 (254)
T COG1121 118 EKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTH 197 (254)
T ss_pred HHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeC
Confidence 44555666665421110 13333 344424456778889999999998765 44444444443331 122777887766
Q ss_pred CCC
Q 037018 177 DPF 179 (663)
Q Consensus 177 ~~~ 179 (663)
|-.
T Consensus 198 DL~ 200 (254)
T COG1121 198 DLG 200 (254)
T ss_pred CcH
Confidence 543
No 230
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=85.60 E-value=1.2 Score=43.34 Aligned_cols=61 Identities=10% Similarity=-0.033 Sum_probs=31.1
Q ss_pred CCcccccCCccCccCCccccccchhhcHHHHHHHHhcCCCCceEEEEEec----chhhHHHHHhcC
Q 037018 1 MTSSVNLRKPLTHSSSTSCSSKTVKVKVKAVLVWLFMLDSMWLQFLTAVA----YKTAFVADIYNN 62 (663)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~i~~~L~~~~~~~~~vi~i~G----GKTtla~~v~~~ 62 (663)
|+.+..+.-|...+..-+.-+.|.+.........+..... ..+.+.|+| |||+||+++++.
T Consensus 1 ~~~ql~~~~~~~~~~~~d~f~~~~~~~~~~~l~~~~~~~~-~~~~~~l~G~~G~GKT~La~ai~~~ 65 (227)
T PRK08903 1 MMRQLTLDLGPPPPPTFDNFVAGENAELVARLRELAAGPV-ADRFFYLWGEAGSGRSHLLQALVAD 65 (227)
T ss_pred CCcccccCCCCCChhhhcccccCCcHHHHHHHHHHHhccC-CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4444443333333333333234654444333333322211 234566777 999999999993
No 231
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=85.48 E-value=6.4 Score=43.09 Aligned_cols=42 Identities=10% Similarity=-0.041 Sum_probs=31.3
Q ss_pred cccchhhcHHHHHHHHhcCCCCc-eEEEEEec-chhhHHHHHhc
Q 037018 20 SSKTVKVKVKAVLVWLFMLDSMW-LQFLTAVA-YKTAFVADIYN 61 (663)
Q Consensus 20 ~~~G~~~~~~~i~~~L~~~~~~~-~~vi~i~G-GKTtla~~v~~ 61 (663)
.++|-+.-++.+.+++....-.. +-+.|-.| ||||+|+.+..
T Consensus 17 diiGq~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk 60 (486)
T PRK14953 17 EVIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAK 60 (486)
T ss_pred HccChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 58899999999999998754312 22344444 99999999877
No 232
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=85.45 E-value=9 Score=42.81 Aligned_cols=43 Identities=9% Similarity=-0.177 Sum_probs=32.0
Q ss_pred cccchhhcHHHHHHHHhcCCCCc-eEEEEEec-chhhHHHHHhcC
Q 037018 20 SSKTVKVKVKAVLVWLFMLDSMW-LQFLTAVA-YKTAFVADIYNN 62 (663)
Q Consensus 20 ~~~G~~~~~~~i~~~L~~~~~~~-~~vi~i~G-GKTtla~~v~~~ 62 (663)
.++|-+.-++.+.+++..+.-.. +-+-|--| ||||+|+.+.+.
T Consensus 14 eivGq~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~ 58 (584)
T PRK14952 14 EVVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARS 58 (584)
T ss_pred HhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999988764322 23334444 999999998873
No 233
>PF14516 AAA_35: AAA-like domain
Probab=85.44 E-value=4.4 Score=42.00 Aligned_cols=111 Identities=11% Similarity=0.097 Sum_probs=63.4
Q ss_pred CCccccccchhhcHHHHHHHHhcCCCCceEEEEEec----chhhHHHHHhcCCCccccCCCCccccCCceeeccCCCcce
Q 037018 15 SSTSCSSKTVKVKVKAVLVWLFMLDSMWLQFLTAVA----YKTAFVADIYNNNVDLSAMNPKLRVPKRFINKAFPVAFPV 90 (663)
Q Consensus 15 ~~~~~~~~G~~~~~~~i~~~L~~~~~~~~~vi~i~G----GKTtla~~v~~~~~~~~~~~~~~~~~~~F~~~~~~~~~~v 90 (663)
..+.+-.|+|....+++.+.|...+ ..+.|.| |||+|+..+.+.. +- ..+. +++ +
T Consensus 7 ~~~~~~Yi~R~~~e~~~~~~i~~~G----~~~~I~apRq~GKTSll~~l~~~l----------~~-~~~~-~v~-----i 65 (331)
T PF14516_consen 7 PLDSPFYIERPPAEQECYQEIVQPG----SYIRIKAPRQMGKTSLLLRLLERL----------QQ-QGYR-CVY-----I 65 (331)
T ss_pred CCCCCcccCchHHHHHHHHHHhcCC----CEEEEECcccCCHHHHHHHHHHHH----------HH-CCCE-EEE-----E
Confidence 3455567788867777777776643 4678888 9999999999844 22 2333 334 3
Q ss_pred EeCC-----CcchhHHHHHHHH----HHHhCCCCCc---chhhhh--HhhHHHHHHHHhh-c--CCcEEEEEeCCCC
Q 037018 91 DVNC-----ACNAQLNHILDDI----IKSVMPPSRV---NVIISE--DYKLKTIILRDYL-T--NKKDFIVLDDVFD 150 (663)
Q Consensus 91 ~vs~-----~~~~~~~~l~~~i----~~~l~~~~~~---~~~~~~--~~~l~~~~l~~~L-~--~kr~LlVLDdv~~ 150 (663)
.+.. ..+ ..++++.+ .+++..+... |. +.. .... ...+.+.+ . +++++|++|+|..
T Consensus 66 d~~~~~~~~~~~--~~~f~~~~~~~i~~~L~l~~~l~~~w~-~~~~~~~~~-~~~~~~~ll~~~~~~lVL~iDEiD~ 138 (331)
T PF14516_consen 66 DLQQLGSAIFSD--LEQFLRWFCEEISRQLKLDEKLDEYWD-EEIGSKISC-TEYFEEYLLKQIDKPLVLFIDEIDR 138 (331)
T ss_pred EeecCCCcccCC--HHHHHHHHHHHHHHHcCCChhHHHHHH-HhcCChhhH-HHHHHHHHHhcCCCCEEEEEechhh
Confidence 3332 123 55455444 4454433211 11 010 2233 34444443 2 5899999999986
No 234
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=85.32 E-value=0.47 Score=47.59 Aligned_cols=35 Identities=11% Similarity=0.132 Sum_probs=26.5
Q ss_pred cHHHHHHHHhcCCCCceEEEEEec-chhhHHHHHhcC
Q 037018 27 KVKAVLVWLFMLDSMWLQFLTAVA-YKTAFVADIYNN 62 (663)
Q Consensus 27 ~~~~i~~~L~~~~~~~~~vi~i~G-GKTtla~~v~~~ 62 (663)
....+++.+...+. .+-++|-.| |||++++.....
T Consensus 21 r~~~ll~~l~~~~~-pvLl~G~~GtGKT~li~~~l~~ 56 (272)
T PF12775_consen 21 RYSYLLDLLLSNGR-PVLLVGPSGTGKTSLIQNFLSS 56 (272)
T ss_dssp HHHHHHHHHHHCTE-EEEEESSTTSSHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcCC-cEEEECCCCCchhHHHHhhhcc
Confidence 35667777777654 677777777 999999998873
No 235
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=85.25 E-value=2.9 Score=40.41 Aligned_cols=49 Identities=18% Similarity=0.236 Sum_probs=27.9
Q ss_pred hhHHHHHHHHhhcCCcEEEEEeCCCC--C----hhhHHHHHhhCCCCCCCceEEEE
Q 037018 125 YKLKTIILRDYLTNKKDFIVLDDVFD--D----REIWNDLEKFLPDNQNGSRVLIL 174 (663)
Q Consensus 125 ~~l~~~~l~~~L~~kr~LlVLDdv~~--~----~~~~~~l~~~~~~~~~gskIiiT 174 (663)
.+.+...|-+.|--+.=+||+|..-+ | .+.|+-+...- ...+=.-|+||
T Consensus 145 GQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~-~~~~lt~l~Is 199 (252)
T COG1124 145 GQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELK-KERGLTYLFIS 199 (252)
T ss_pred hHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHH-HhcCceEEEEe
Confidence 44424456677877888889999876 5 33444444322 22223455555
No 236
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=85.23 E-value=5.6 Score=44.48 Aligned_cols=43 Identities=7% Similarity=-0.226 Sum_probs=30.9
Q ss_pred cccchhhcHHHHHHHHhcCCC-CceEEEEEec-chhhHHHHHhcC
Q 037018 20 SSKTVKVKVKAVLVWLFMLDS-MWLQFLTAVA-YKTAFVADIYNN 62 (663)
Q Consensus 20 ~~~G~~~~~~~i~~~L~~~~~-~~~~vi~i~G-GKTtla~~v~~~ 62 (663)
.++|-+.-++.+.+.+..+.- +.+-..|--| ||||+|+.+.+.
T Consensus 17 dIiGQe~v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~ 61 (624)
T PRK14959 17 EVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKA 61 (624)
T ss_pred HhcCCHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHh
Confidence 688988888888888876542 2233444445 999999998883
No 237
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=85.13 E-value=1.6 Score=50.20 Aligned_cols=43 Identities=9% Similarity=-0.079 Sum_probs=31.5
Q ss_pred ccccchhhcHHHHHHHHhcC------CCCceEEEEEec----chhhHHHHHhc
Q 037018 19 CSSKTVKVKVKAVLVWLFML------DSMWLQFLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 19 ~~~~G~~~~~~~i~~~L~~~------~~~~~~vi~i~G----GKTtla~~v~~ 61 (663)
..++|-++.++.|.+.+... .......+-++| |||++|+.+..
T Consensus 458 ~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~ 510 (758)
T PRK11034 458 MLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSK 510 (758)
T ss_pred ceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999888632 111344555666 99999999988
No 238
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=85.07 E-value=1.2 Score=42.66 Aligned_cols=19 Identities=16% Similarity=0.197 Sum_probs=16.1
Q ss_pred eEEEEEec----chhhHHHHHhc
Q 037018 43 LQFLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 43 ~~vi~i~G----GKTtla~~v~~ 61 (663)
-+++.|.| ||||+.+.+.-
T Consensus 29 ~~~~~l~G~n~~GKstll~~i~~ 51 (204)
T cd03282 29 SRFHIITGPNMSGKSTYLKQIAL 51 (204)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 47788888 99999999875
No 239
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=84.98 E-value=6.6 Score=44.07 Aligned_cols=41 Identities=5% Similarity=-0.191 Sum_probs=31.6
Q ss_pred cccchhhcHHHHHHHHhcCCCCceEEEEEec----chhhHHHHHhcC
Q 037018 20 SSKTVKVKVKAVLVWLFMLDSMWLQFLTAVA----YKTAFVADIYNN 62 (663)
Q Consensus 20 ~~~G~~~~~~~i~~~L~~~~~~~~~vi~i~G----GKTtla~~v~~~ 62 (663)
.++|-+.-++.+.+.+..+.- -..+=++| ||||+|+.+.+.
T Consensus 17 ~iiGq~~v~~~L~~~i~~~~~--~hayLf~Gp~G~GKtt~A~~lak~ 61 (576)
T PRK14965 17 DLTGQEHVSRTLQNAIDTGRV--AHAFLFTGARGVGKTSTARILAKA 61 (576)
T ss_pred HccCcHHHHHHHHHHHHcCCC--CeEEEEECCCCCCHHHHHHHHHHh
Confidence 689999999999998876543 23344566 999999998873
No 240
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=84.97 E-value=0.61 Score=41.56 Aligned_cols=19 Identities=21% Similarity=0.349 Sum_probs=16.2
Q ss_pred EEEEEec----chhhHHHHHhcC
Q 037018 44 QFLTAVA----YKTAFVADIYNN 62 (663)
Q Consensus 44 ~vi~i~G----GKTtla~~v~~~ 62 (663)
.+|+|+| |||||++.+.+.
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~ 23 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINE 23 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 3688888 999999999993
No 241
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=84.94 E-value=0.7 Score=54.16 Aligned_cols=42 Identities=12% Similarity=-0.031 Sum_probs=35.8
Q ss_pred cccchhhcHHHHHHHHhcCCCCceEEEEEec-chhhHHHHHhc
Q 037018 20 SSKTVKVKVKAVLVWLFMLDSMWLQFLTAVA-YKTAFVADIYN 61 (663)
Q Consensus 20 ~~~G~~~~~~~i~~~L~~~~~~~~~vi~i~G-GKTtla~~v~~ 61 (663)
.++||+.++.++++.|........-++|=.| ||||+|+.+.+
T Consensus 188 ~~iGr~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~ 230 (852)
T TIGR03345 188 PVLGRDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLAL 230 (852)
T ss_pred cccCCHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHH
Confidence 5899999999999999887654566777777 99999999998
No 242
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=84.90 E-value=3.6 Score=40.52 Aligned_cols=117 Identities=13% Similarity=0.034 Sum_probs=62.2
Q ss_pred ceEEEEEec-chhhHHHHHhcCCCccccCCCCccccCCceeeccCCCcc-eEeCCCcchhHHHHHHHHHHHhCCCCCcch
Q 037018 42 WLQFLTAVA-YKTAFVADIYNNNVDLSAMNPKLRVPKRFINKAFPVAFP-VDVNCACNAQLNHILDDIIKSVMPPSRVNV 119 (663)
Q Consensus 42 ~~~vi~i~G-GKTtla~~v~~~~~~~~~~~~~~~~~~~F~~~~~~~~~~-v~vs~~~~~~~~~l~~~i~~~l~~~~~~~~ 119 (663)
.+.+||-.| ||||+++.|..=. .--...+.| ..-. ...+ ... ..+-..+++..++...+.-.
T Consensus 41 ~~glVGESG~GKSTlgr~i~~L~------------~pt~G~i~f-~g~~i~~~~-~~~--~~~~v~elL~~Vgl~~~~~~ 104 (268)
T COG4608 41 TLGLVGESGCGKSTLGRLILGLE------------EPTSGEILF-EGKDITKLS-KEE--RRERVLELLEKVGLPEEFLY 104 (268)
T ss_pred EEEEEecCCCCHHHHHHHHHcCc------------CCCCceEEE-cCcchhhcc-hhH--HHHHHHHHHHHhCCCHHHhh
Confidence 456666666 9999999999833 212222222 1000 1111 222 44556677777765332100
Q ss_pred --hhhh-HhhHHHHHHHHhhcCCcEEEEEeCCCC--ChhhHHHHH---hhCCCCCCCceEEEE
Q 037018 120 --IISE-DYKLKTIILRDYLTNKKDFIVLDDVFD--DREIWNDLE---KFLPDNQNGSRVLIL 174 (663)
Q Consensus 120 --~~~~-~~~l~~~~l~~~L~~kr~LlVLDdv~~--~~~~~~~l~---~~~~~~~~gskIiiT 174 (663)
.++. ..+.+.-.+.+.|.-+.=|+|.|..-+ |.....++. ..+.....=+.+-||
T Consensus 105 ryPhelSGGQrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIs 167 (268)
T COG4608 105 RYPHELSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFIS 167 (268)
T ss_pred cCCcccCchhhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEE
Confidence 1222 334423456677888999999999766 433333333 334333345667777
No 243
>PLN02348 phosphoribulokinase
Probab=84.84 E-value=1.4 Score=45.94 Aligned_cols=20 Identities=15% Similarity=0.120 Sum_probs=18.6
Q ss_pred ceEEEEEec----chhhHHHHHhc
Q 037018 42 WLQFLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 42 ~~~vi~i~G----GKTtla~~v~~ 61 (663)
+..+|||.| ||||+|+.+.+
T Consensus 48 ~p~IIGIaG~SGSGKSTfA~~L~~ 71 (395)
T PLN02348 48 GTVVIGLAADSGCGKSTFMRRLTS 71 (395)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 578999999 99999999988
No 244
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=84.81 E-value=3.1 Score=44.26 Aligned_cols=20 Identities=25% Similarity=0.210 Sum_probs=15.5
Q ss_pred EEEEEec----chhhHHHHHhcCC
Q 037018 44 QFLTAVA----YKTAFVADIYNNN 63 (663)
Q Consensus 44 ~vi~i~G----GKTtla~~v~~~~ 63 (663)
..++|.| |||||++.+.+..
T Consensus 141 q~i~I~G~sG~GKTtLl~~I~~~~ 164 (418)
T TIGR03498 141 QRLGIFAGSGVGKSTLLSMLARNT 164 (418)
T ss_pred cEEEEECCCCCChHHHHHHHhCCC
Confidence 4456666 9999999999844
No 245
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=84.75 E-value=1.2 Score=44.47 Aligned_cols=32 Identities=22% Similarity=0.192 Sum_probs=24.3
Q ss_pred HHHHHHhhcCCcEEEEEeCCCCChhhHHHHHhh
Q 037018 129 TIILRDYLTNKKDFIVLDDVFDDREIWNDLEKF 161 (663)
Q Consensus 129 ~~~l~~~L~~kr~LlVLDdv~~~~~~~~~l~~~ 161 (663)
...++..|+...-.|+++++.+ .+....+..+
T Consensus 139 ~~~l~~~lR~~PD~i~vgEiR~-~e~a~~~~~a 170 (264)
T cd01129 139 ARGLRAILRQDPDIIMVGEIRD-AETAEIAVQA 170 (264)
T ss_pred HHHHHHHhccCCCEEEeccCCC-HHHHHHHHHH
Confidence 5667788888889999999999 7765544443
No 246
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=84.68 E-value=5.9 Score=44.69 Aligned_cols=40 Identities=8% Similarity=-0.185 Sum_probs=31.1
Q ss_pred cccchhhcHHHHHHHHhcCCCCceEEEEEec----chhhHHHHHhc
Q 037018 20 SSKTVKVKVKAVLVWLFMLDSMWLQFLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 20 ~~~G~~~~~~~i~~~L~~~~~~~~~vi~i~G----GKTtla~~v~~ 61 (663)
.++|-+..++.+.+++..+.- -..+=++| ||||+|+.+.+
T Consensus 18 ~viGq~~~~~~L~~~i~~~~l--~hayLf~Gp~G~GKtt~A~~lAk 61 (614)
T PRK14971 18 SVVGQEALTTTLKNAIATNKL--AHAYLFCGPRGVGKTTCARIFAK 61 (614)
T ss_pred HhcCcHHHHHHHHHHHHcCCC--CeeEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999887643 23345566 99999988776
No 247
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=84.68 E-value=1.7 Score=40.02 Aligned_cols=42 Identities=19% Similarity=-0.039 Sum_probs=28.9
Q ss_pred ccchhhcHHHHHHHHhcCCCCceEEEEEec----chhhHHHHHhcCC
Q 037018 21 SKTVKVKVKAVLVWLFMLDSMWLQFLTAVA----YKTAFVADIYNNN 63 (663)
Q Consensus 21 ~~G~~~~~~~i~~~L~~~~~~~~~vi~i~G----GKTtla~~v~~~~ 63 (663)
++|.+..++++.+.+..-...+..|+ |+| ||+.+|+.|++..
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~~pVl-I~GE~GtGK~~lA~~IH~~s 46 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSDLPVL-ITGETGTGKELLARAIHNNS 46 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTSTS-EE-EECSTTSSHHHHHHHHHHCS
T ss_pred CEeCCHHHHHHHHHHHHHhCCCCCEE-EEcCCCCcHHHHHHHHHHhh
Confidence 47888888888888766433244444 667 9999999999944
No 248
>PTZ00185 ATPase alpha subunit; Provisional
Probab=84.67 E-value=5.6 Score=43.06 Aligned_cols=100 Identities=13% Similarity=0.187 Sum_probs=50.3
Q ss_pred ceEEEEEec-chhhHH-HHHhcCCCccccCCCCccc-----cCCceeeccCCCcceEeCCCcchhHHHHHHHHHHHhCC-
Q 037018 42 WLQFLTAVA-YKTAFV-ADIYNNNVDLSAMNPKLRV-----PKRFINKAFPVAFPVDVNCACNAQLNHILDDIIKSVMP- 113 (663)
Q Consensus 42 ~~~vi~i~G-GKTtla-~~v~~~~~~~~~~~~~~~~-----~~~F~~~~~~~~~~v~vs~~~~~~~~~l~~~i~~~l~~- 113 (663)
+..++|=.| |||||| ..|.|.. .+ .+.-+.+++ +-+.+... ...-..+.+.+-+.
T Consensus 191 R~lIfGd~GtGKTtLAld~IinQ~----------~~~~~~~~~~~~v~Vy-----vaIGeR~r--EV~ei~~~L~e~GaL 253 (574)
T PTZ00185 191 RELIVGDRQTGKTSIAVSTIINQV----------RINQQILSKNAVISIY-----VSIGQRCS--NVARIHRLLRSYGAL 253 (574)
T ss_pred EEEeecCCCCChHHHHHHHHHhhh----------hhccccccCCCCEEEE-----EEeccchH--HHHHHHHHHHhcCCc
Confidence 444444344 999996 6677743 22 134456778 88887766 32223333333321
Q ss_pred ---------CCCcchhhhhHhhHHHHHHHHhh--cCCcEEEEEeCCCCChhhHHHHH
Q 037018 114 ---------PSRVNVIISEDYKLKTIILRDYL--TNKKDFIVLDDVFDDREIWNDLE 159 (663)
Q Consensus 114 ---------~~~~~~~~~~~~~l~~~~l~~~L--~~kr~LlVLDdv~~~~~~~~~l~ 159 (663)
.++........-.. ...+-+++ ++|.+|+|+||+..-.+.+.++.
T Consensus 254 ~~TvVV~AtAdep~~~r~~Apy~-a~tiAEYFrd~GkdVLiv~DDLTr~A~A~REIS 309 (574)
T PTZ00185 254 RYTTVMAATAAEPAGLQYLAPYS-GVTMGEYFMNRGRHCLCVYDDLSKQAVAYRQIS 309 (574)
T ss_pred cceEEEEECCCCCHHHHHHHHHH-HHHHHHHHHHcCCCEEEEEcCchHHHHHHHHHH
Confidence 11111111111111 22223333 47999999999976344455543
No 249
>PRK13531 regulatory ATPase RavA; Provisional
Probab=84.66 E-value=0.89 Score=48.84 Aligned_cols=41 Identities=7% Similarity=-0.059 Sum_probs=36.6
Q ss_pred ccccchhhcHHHHHHHHhcCCCCceEEEEEec-chhhHHHHHhc
Q 037018 19 CSSKTVKVKVKAVLVWLFMLDSMWLQFLTAVA-YKTAFVADIYN 61 (663)
Q Consensus 19 ~~~~G~~~~~~~i~~~L~~~~~~~~~vi~i~G-GKTtla~~v~~ 61 (663)
..++|+++.++.+...+..+. .+-+.|..| |||++|+.+..
T Consensus 20 ~~i~gre~vI~lll~aalag~--hVLL~GpPGTGKT~LAraLa~ 61 (498)
T PRK13531 20 KGLYERSHAIRLCLLAALSGE--SVFLLGPPGIAKSLIARRLKF 61 (498)
T ss_pred hhccCcHHHHHHHHHHHccCC--CEEEECCCChhHHHHHHHHHH
Confidence 468999999999999888776 588899999 99999999998
No 250
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=84.54 E-value=2.1 Score=44.64 Aligned_cols=44 Identities=20% Similarity=0.171 Sum_probs=30.7
Q ss_pred HHHHHHhhcCCcEEEEEeCCCCChhhHHHHHhhCCCCCCCceEEEEEe
Q 037018 129 TIILRDYLTNKKDFIVLDDVFDDREIWNDLEKFLPDNQNGSRVLILVT 176 (663)
Q Consensus 129 ~~~l~~~L~~kr~LlVLDdv~~~~~~~~~l~~~~~~~~~gskIiiT~r 176 (663)
...++..|+...=.|++|.+.+ .+.+.....+- ..|-.|+-|.-
T Consensus 185 ~~~l~~~lr~~pd~i~vgEird-~~~~~~~l~aa---~tGh~v~~T~H 228 (343)
T TIGR01420 185 ANALRAALREDPDVILIGEMRD-LETVELALTAA---ETGHLVFGTLH 228 (343)
T ss_pred HHHHHHhhccCCCEEEEeCCCC-HHHHHHHHHHH---HcCCcEEEEEc
Confidence 5567788889999999999998 77776644432 33555555543
No 251
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=84.45 E-value=2.7 Score=37.21 Aligned_cols=17 Identities=6% Similarity=0.051 Sum_probs=13.4
Q ss_pred EEEEec-chhhHHHHHhc
Q 037018 45 FLTAVA-YKTAFVADIYN 61 (663)
Q Consensus 45 vi~i~G-GKTtla~~v~~ 61 (663)
++|..| ||||+|+.+..
T Consensus 4 ~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 4 LCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEESTTSSHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 444455 99999999987
No 252
>PRK09099 type III secretion system ATPase; Provisional
Probab=84.44 E-value=3.3 Score=44.37 Aligned_cols=20 Identities=15% Similarity=0.091 Sum_probs=15.6
Q ss_pred EEEEEec----chhhHHHHHhcCC
Q 037018 44 QFLTAVA----YKTAFVADIYNNN 63 (663)
Q Consensus 44 ~vi~i~G----GKTtla~~v~~~~ 63 (663)
..++|.| |||||++.+....
T Consensus 164 q~~~I~G~sG~GKTtLl~~ia~~~ 187 (441)
T PRK09099 164 QRMGIFAPAGVGKSTLMGMFARGT 187 (441)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 4555655 9999999999854
No 253
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=84.36 E-value=4 Score=39.63 Aligned_cols=43 Identities=9% Similarity=0.002 Sum_probs=29.9
Q ss_pred ceEEEEEec----chhhHHHHHhcCCCccccCCCCccccCCceeeccCCCcceEeCCCcchhHHHHH
Q 037018 42 WLQFLTAVA----YKTAFVADIYNNNVDLSAMNPKLRVPKRFINKAFPVAFPVDVNCACNAQLNHIL 104 (663)
Q Consensus 42 ~~~vi~i~G----GKTtla~~v~~~~~~~~~~~~~~~~~~~F~~~~~~~~~~v~vs~~~~~~~~~l~ 104 (663)
.-.++-|+| ||||+|.++.. .....-..++| ++.. .++ ..++.
T Consensus 22 ~g~i~~i~G~~GsGKT~l~~~la~------------~~~~~~~~v~y-----i~~e-~~~--~~r~~ 68 (225)
T PRK09361 22 RGTITQIYGPPGSGKTNICLQLAV------------EAAKNGKKVIY-----IDTE-GLS--PERFK 68 (225)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH------------HHHHCCCeEEE-----EECC-CCC--HHHHH
Confidence 457888888 99999999987 33344466778 7665 455 54543
No 254
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=84.30 E-value=3.7 Score=39.58 Aligned_cols=20 Identities=10% Similarity=-0.109 Sum_probs=16.6
Q ss_pred ceEEEEEec----chhhHHHHHhc
Q 037018 42 WLQFLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 42 ~~~vi~i~G----GKTtla~~v~~ 61 (663)
.-.++.|.| ||||+|.++..
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~~a~ 41 (218)
T cd01394 18 RGTVTQVYGPPGTGKTNIAIQLAV 41 (218)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456777777 99999999887
No 255
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=84.06 E-value=5.4 Score=40.96 Aligned_cols=85 Identities=11% Similarity=0.111 Sum_probs=44.9
Q ss_pred EEEEEec----chhhHHHHHhcCCCccccCCCCccccCCceeeccCCCcceEeC-CCcchhHHHHHHHHHHHhCC-----
Q 037018 44 QFLTAVA----YKTAFVADIYNNNVDLSAMNPKLRVPKRFINKAFPVAFPVDVN-CACNAQLNHILDDIIKSVMP----- 113 (663)
Q Consensus 44 ~vi~i~G----GKTtla~~v~~~~~~~~~~~~~~~~~~~F~~~~~~~~~~v~vs-~~~~~~~~~l~~~i~~~l~~----- 113 (663)
..++|+| |||||++.+.+.. .. +..+. +-+. +..+ +.++.++.+..-..
T Consensus 70 qri~I~G~sG~GKTtLl~~Ia~~~----------~~----~~~vi-----~~iGer~~e--v~~~~~~~~~~~~l~rtvv 128 (326)
T cd01136 70 QRLGIFAGSGVGKSTLLGMIARGT----------TA----DVNVI-----ALIGERGRE--VREFIEKDLGEEGLKRSVV 128 (326)
T ss_pred cEEEEECCCCCChHHHHHHHhCCC----------CC----CEEEE-----EEEecCCcc--HHHHHHHHHhcCccceEEE
Confidence 4456665 9999999999844 21 23333 3333 2334 56666666554221
Q ss_pred ---CCCcchhhhh-HhhHHHHHHHHhh--cCCcEEEEEeCCCC
Q 037018 114 ---PSRVNVIISE-DYKLKTIILRDYL--TNKKDFIVLDDVFD 150 (663)
Q Consensus 114 ---~~~~~~~~~~-~~~l~~~~l~~~L--~~kr~LlVLDdv~~ 150 (663)
..+.+..... .... ...+-+++ ++|.+|+++||+-.
T Consensus 129 v~~t~d~~~~~r~~~~~~-a~~~AEyfr~~g~~Vll~~Dsltr 170 (326)
T cd01136 129 VVATSDESPLLRVKAAYT-ATAIAEYFRDQGKDVLLLMDSLTR 170 (326)
T ss_pred EEcCCCCCHHHHHHHHHH-HHHHHHHHHHcCCCeEEEeccchH
Confidence 1111111111 2222 22233333 58999999999865
No 256
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=84.05 E-value=3.2 Score=40.28 Aligned_cols=49 Identities=16% Similarity=0.334 Sum_probs=28.0
Q ss_pred HHHHHHhhcCCcEEEEEeCCCC--ChhhHHHHHhhCCC-CCCCceEEEEEeC
Q 037018 129 TIILRDYLTNKKDFIVLDDVFD--DREIWNDLEKFLPD-NQNGSRVLILVTD 177 (663)
Q Consensus 129 ~~~l~~~L~~kr~LlVLDdv~~--~~~~~~~l~~~~~~-~~~gskIiiT~r~ 177 (663)
.-.+-+.+-.+.=+++||+.-. |...-..+...+.. ...|.-||++|.+
T Consensus 150 rv~laral~~~p~llllDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~ 201 (224)
T cd03220 150 RLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHD 201 (224)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 3346666777888899999887 44433333333321 1225556666554
No 257
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=84.03 E-value=0.92 Score=26.99 Aligned_cols=18 Identities=33% Similarity=0.451 Sum_probs=9.6
Q ss_pred CCcCeEeccCCCCccchh
Q 037018 395 FHLKYLKLNIPSLNCLPS 412 (663)
Q Consensus 395 ~~L~~L~L~~~~i~~lp~ 412 (663)
.+|++|+|++|.++.+|.
T Consensus 2 ~~L~~L~L~~N~l~~lp~ 19 (26)
T smart00369 2 PNLRELDLSNNQLSSLPP 19 (26)
T ss_pred CCCCEEECCCCcCCcCCH
Confidence 345555555555555553
No 258
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=84.03 E-value=0.92 Score=26.99 Aligned_cols=18 Identities=33% Similarity=0.451 Sum_probs=9.6
Q ss_pred CCcCeEeccCCCCccchh
Q 037018 395 FHLKYLKLNIPSLNCLPS 412 (663)
Q Consensus 395 ~~L~~L~L~~~~i~~lp~ 412 (663)
.+|++|+|++|.++.+|.
T Consensus 2 ~~L~~L~L~~N~l~~lp~ 19 (26)
T smart00370 2 PNLRELDLSNNQLSSLPP 19 (26)
T ss_pred CCCCEEECCCCcCCcCCH
Confidence 345555555555555553
No 259
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=83.94 E-value=4.8 Score=45.43 Aligned_cols=44 Identities=9% Similarity=-0.173 Sum_probs=33.4
Q ss_pred ccccchhhcHHHHHHHHhcCCC-CceEEEEEec-chhhHHHHHhcC
Q 037018 19 CSSKTVKVKVKAVLVWLFMLDS-MWLQFLTAVA-YKTAFVADIYNN 62 (663)
Q Consensus 19 ~~~~G~~~~~~~i~~~L~~~~~-~~~~vi~i~G-GKTtla~~v~~~ 62 (663)
..++|.+.-++.+..++....- +.+-+.|=.| ||||+|+.+.+.
T Consensus 16 ~~liGq~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~ 61 (620)
T PRK14948 16 DELVGQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKS 61 (620)
T ss_pred hhccChHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHH
Confidence 3689999999999999887542 2344555555 999999999884
No 260
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=83.74 E-value=2.9 Score=44.95 Aligned_cols=91 Identities=11% Similarity=0.127 Sum_probs=49.3
Q ss_pred ceEEEEEec-chhhHHHHHhcCCCccccCCCCccccCCceeeccCCCcceEeCCCcchhHHHHHHHHHHHhCC-------
Q 037018 42 WLQFLTAVA-YKTAFVADIYNNNVDLSAMNPKLRVPKRFINKAFPVAFPVDVNCACNAQLNHILDDIIKSVMP------- 113 (663)
Q Consensus 42 ~~~vi~i~G-GKTtla~~v~~~~~~~~~~~~~~~~~~~F~~~~~~~~~~v~vs~~~~~~~~~l~~~i~~~l~~------- 113 (663)
+..++|=.| |||||+..+.++. . +.+-+.+++ +-+.+... .+.++.+++...-..
T Consensus 145 R~gIfa~~G~GKt~Ll~~~~~~~----------~-~~~~dv~V~-----~liGER~r-Ev~ef~~~~~~~~~l~rsvvv~ 207 (461)
T PRK12597 145 KTGLFGGAGVGKTVLMMELIFNI----------S-KQHSGSSVF-----AGVGERSR-EGHELYHEMKESGVLDKTVMVY 207 (461)
T ss_pred EEEeecCCCCChhHHHHHHHHHH----------H-hhCCCEEEE-----EcCCcchH-HHHHHHHHHHhcCCcceeEEEe
Confidence 444444444 9999999888843 2 224566777 66655443 155566666543211
Q ss_pred -CCCcchhhhh-HhhHHHHHHHHhh---cCCcEEEEEeCCCC
Q 037018 114 -PSRVNVIISE-DYKLKTIILRDYL---TNKKDFIVLDDVFD 150 (663)
Q Consensus 114 -~~~~~~~~~~-~~~l~~~~l~~~L---~~kr~LlVLDdv~~ 150 (663)
..+.+...-. .... +-.+-+++ ++|.+|+++||+-.
T Consensus 208 atsd~~~~~R~~a~~~-a~tiAEyfrd~~G~~VLl~~DslTR 248 (461)
T PRK12597 208 GQMNEPPGARMRVVLT-GLTIAEYLRDEEKEDVLLFIDNIFR 248 (461)
T ss_pred cCCCCCHHHHHHHHHH-HHHHHHHHHHhcCCceEEEeccchH
Confidence 1111111111 2222 33344555 47999999999954
No 261
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=83.70 E-value=2.3 Score=44.47 Aligned_cols=22 Identities=23% Similarity=0.182 Sum_probs=16.3
Q ss_pred ceEEEEEec-chhhHHHHHhcCC
Q 037018 42 WLQFLTAVA-YKTAFVADIYNNN 63 (663)
Q Consensus 42 ~~~vi~i~G-GKTtla~~v~~~~ 63 (663)
++.+.|=|| |||.|+...|+..
T Consensus 64 GlYl~G~vG~GKT~Lmd~f~~~l 86 (362)
T PF03969_consen 64 GLYLWGPVGRGKTMLMDLFYDSL 86 (362)
T ss_pred eEEEECCCCCchhHHHHHHHHhC
Confidence 344444445 9999999999965
No 262
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=83.53 E-value=1.3 Score=43.21 Aligned_cols=21 Identities=5% Similarity=-0.102 Sum_probs=18.8
Q ss_pred ceEEEEEec----chhhHHHHHhcC
Q 037018 42 WLQFLTAVA----YKTAFVADIYNN 62 (663)
Q Consensus 42 ~~~vi~i~G----GKTtla~~v~~~ 62 (663)
+..+|||.| |||||++.+..-
T Consensus 32 ~~~iigi~G~~GsGKTTl~~~L~~~ 56 (229)
T PRK09270 32 RRTIVGIAGPPGAGKSTLAEFLEAL 56 (229)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 678999999 999999999883
No 263
>PRK05480 uridine/cytidine kinase; Provisional
Probab=83.51 E-value=0.81 Score=43.93 Aligned_cols=20 Identities=20% Similarity=0.187 Sum_probs=17.9
Q ss_pred ceEEEEEec----chhhHHHHHhc
Q 037018 42 WLQFLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 42 ~~~vi~i~G----GKTtla~~v~~ 61 (663)
+..+|+|.| ||||||+.+..
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~ 28 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYE 28 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 467899999 99999999998
No 264
>TIGR01040 V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=83.49 E-value=4.2 Score=43.44 Aligned_cols=101 Identities=12% Similarity=0.144 Sum_probs=56.4
Q ss_pred CceEEEEEec-chhhHHHHHhcCCCccccCCCCccccC--Cce---------eeccCCCcceEeCCCcchhHHHHHHHHH
Q 037018 41 MWLQFLTAVA-YKTAFVADIYNNNVDLSAMNPKLRVPK--RFI---------NKAFPVAFPVDVNCACNAQLNHILDDII 108 (663)
Q Consensus 41 ~~~~vi~i~G-GKTtla~~v~~~~~~~~~~~~~~~~~~--~F~---------~~~~~~~~~v~vs~~~~~~~~~l~~~i~ 108 (663)
++..++|-.| |||||+..|.+.. +..+ -.| .+++ +-+.+... ..+...+.+
T Consensus 142 QRigIfagsGvGKs~L~~~i~~~~----------~~~~~~~aD~~~~~~~~~v~V~-----a~IGerre--~~efi~~~l 204 (466)
T TIGR01040 142 QKIPIFSAAGLPHNEIAAQICRQA----------GLVKLPTKDVHDGHEDNFAIVF-----AAMGVNME--TARFFKQDF 204 (466)
T ss_pred CeeeeecCCCCCHHHHHHHHHHhh----------ccccccccccccccCCceEEEE-----EEeeeehH--HHHHHHHHH
Confidence 4555555555 9999999999865 2100 012 4566 77777766 666666666
Q ss_pred HHhC-CC--------CCcchhhhh-HhhHHHHHHHHhhc---CCcEEEEEeCCCCChhhHHHHH
Q 037018 109 KSVM-PP--------SRVNVIISE-DYKLKTIILRDYLT---NKKDFIVLDDVFDDREIWNDLE 159 (663)
Q Consensus 109 ~~l~-~~--------~~~~~~~~~-~~~l~~~~l~~~L~---~kr~LlVLDdv~~~~~~~~~l~ 159 (663)
..-+ .+ .+.+..... .... +--+-++++ +|.+|+++||+-.-.+.+.++.
T Consensus 205 ~~~g~l~rtvvv~atsd~p~~~R~~a~~~-a~tiAEyfr~~~G~~VLl~~DslTr~A~A~REis 267 (466)
T TIGR01040 205 EENGSMERVCLFLNLANDPTIERIITPRL-ALTTAEYLAYQCEKHVLVILTDMSSYADALREVS 267 (466)
T ss_pred HhcCCcceEEEEEECCCCCHHHHHHHHhh-hHHHHHHHHHhcCCcEEEeccChHHHHHHHHHHH
Confidence 6544 11 111111111 2222 333455555 6999999999965244444444
No 265
>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=83.31 E-value=4.3 Score=43.21 Aligned_cols=21 Identities=24% Similarity=0.093 Sum_probs=16.2
Q ss_pred eEEEEEec----chhhHHHHHhcCC
Q 037018 43 LQFLTAVA----YKTAFVADIYNNN 63 (663)
Q Consensus 43 ~~vi~i~G----GKTtla~~v~~~~ 63 (663)
-+.++|+| |||||++.+.+..
T Consensus 137 Gqri~I~G~sG~GKTtLl~~i~~~~ 161 (413)
T TIGR03497 137 GQRVGIFAGSGVGKSTLLGMIARNA 161 (413)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34566666 9999999999844
No 266
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=83.26 E-value=1.4 Score=39.03 Aligned_cols=41 Identities=15% Similarity=0.205 Sum_probs=26.7
Q ss_pred CcEEEEEeCCCC-ChhhHHHHHhhCCC-CCCCceEEEEEeCCC
Q 037018 139 KKDFIVLDDVFD-DREIWNDLEKFLPD-NQNGSRVLILVTDPF 179 (663)
Q Consensus 139 kr~LlVLDdv~~-~~~~~~~l~~~~~~-~~~gskIiiT~r~~~ 179 (663)
+.--++++|+.. ..+....+...+.. .....|||.|++.+-
T Consensus 69 ~~gtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~RlI~ss~~~l 111 (138)
T PF14532_consen 69 KGGTLYLKNIDRLSPEAQRRLLDLLKRQERSNVRLIASSSQDL 111 (138)
T ss_dssp TTSEEEEECGCCS-HHHHHHHHHHHHHCTTTTSEEEEEECC-C
T ss_pred CCCEEEECChHHCCHHHHHHHHHHHHhcCCCCeEEEEEeCCCH
Confidence 334467888887 56667777766653 256789999977543
No 267
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=83.21 E-value=8.1 Score=43.10 Aligned_cols=41 Identities=10% Similarity=-0.154 Sum_probs=32.3
Q ss_pred cccchhhcHHHHHHHHhcCCCCceEEEEEec----chhhHHHHHhcC
Q 037018 20 SSKTVKVKVKAVLVWLFMLDSMWLQFLTAVA----YKTAFVADIYNN 62 (663)
Q Consensus 20 ~~~G~~~~~~~i~~~L~~~~~~~~~vi~i~G----GKTtla~~v~~~ 62 (663)
.++|-+.-++.+.+++....- ...+=++| ||||+|+.+.+.
T Consensus 17 diiGqe~iv~~L~~~i~~~~i--~hayLf~Gp~G~GKTt~Ar~lAk~ 61 (563)
T PRK06647 17 SLEGQDFVVETLKHSIESNKI--ANAYIFSGPRGVGKTSSARAFARC 61 (563)
T ss_pred HccCcHHHHHHHHHHHHcCCC--CeEEEEECCCCCCHHHHHHHHHHh
Confidence 689999999999999987543 23444556 999999999883
No 268
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=82.98 E-value=1.2 Score=46.16 Aligned_cols=43 Identities=9% Similarity=-0.109 Sum_probs=34.2
Q ss_pred ccccchhhcHHHHHHHHhcCCCCceEEEEEec-chhhHHHHHhc
Q 037018 19 CSSKTVKVKVKAVLVWLFMLDSMWLQFLTAVA-YKTAFVADIYN 61 (663)
Q Consensus 19 ~~~~G~~~~~~~i~~~L~~~~~~~~~vi~i~G-GKTtla~~v~~ 61 (663)
..+||.+..+..+.-.+.....+.+-+.|..| ||||+++.+..
T Consensus 4 ~~ivgq~~~~~al~~~~~~~~~g~vli~G~~G~gKttl~r~~~~ 47 (337)
T TIGR02030 4 TAIVGQDEMKLALLLNVIDPKIGGVMVMGDRGTGKSTAVRALAA 47 (337)
T ss_pred cccccHHHHHHHHHHHhcCCCCCeEEEEcCCCCCHHHHHHHHHH
Confidence 35899999888887777765444677888888 99999999976
No 269
>PRK05541 adenylylsulfate kinase; Provisional
Probab=82.98 E-value=1.7 Score=40.44 Aligned_cols=29 Identities=17% Similarity=0.321 Sum_probs=21.4
Q ss_pred EEEEEec----chhhHHHHHhcCCCccccCCCCccccCCceeecc
Q 037018 44 QFLTAVA----YKTAFVADIYNNNVDLSAMNPKLRVPKRFINKAF 84 (663)
Q Consensus 44 ~vi~i~G----GKTtla~~v~~~~~~~~~~~~~~~~~~~F~~~~~ 84 (663)
.+|.+.| ||||+|+.+++ +...++...++
T Consensus 8 ~~I~i~G~~GsGKst~a~~l~~------------~l~~~~~~~~~ 40 (176)
T PRK05541 8 YVIWITGLAGSGKTTIAKALYE------------RLKLKYSNVIY 40 (176)
T ss_pred CEEEEEcCCCCCHHHHHHHHHH------------HHHHcCCcEEE
Confidence 3555555 99999999999 66666665555
No 270
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=82.96 E-value=0.92 Score=43.48 Aligned_cols=21 Identities=19% Similarity=0.083 Sum_probs=18.2
Q ss_pred ceEEEEEec----chhhHHHHHhcC
Q 037018 42 WLQFLTAVA----YKTAFVADIYNN 62 (663)
Q Consensus 42 ~~~vi~i~G----GKTtla~~v~~~ 62 (663)
+-.+|+|+| ||||||+.+...
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHH
Confidence 457899999 999999999984
No 271
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=82.83 E-value=2.6 Score=40.71 Aligned_cols=48 Identities=13% Similarity=0.225 Sum_probs=28.9
Q ss_pred HHHHHhhcCCcEEEEEeCCCC--ChhhHHHHHhhCCCCCCCceEEEEEeC
Q 037018 130 IILRDYLTNKKDFIVLDDVFD--DREIWNDLEKFLPDNQNGSRVLILVTD 177 (663)
Q Consensus 130 ~~l~~~L~~kr~LlVLDdv~~--~~~~~~~l~~~~~~~~~gskIiiT~r~ 177 (663)
-.+-..+-.+.=+++||+.-. |....+.+...+.....+.-||++|.+
T Consensus 142 v~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~ 191 (220)
T cd03263 142 LSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRKGRSIILTTHS 191 (220)
T ss_pred HHHHHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCC
Confidence 345555666778889999887 655555555544432224456666543
No 272
>PRK08233 hypothetical protein; Provisional
Probab=82.64 E-value=0.96 Score=42.17 Aligned_cols=21 Identities=19% Similarity=0.194 Sum_probs=17.5
Q ss_pred eEEEEEec----chhhHHHHHhcCC
Q 037018 43 LQFLTAVA----YKTAFVADIYNNN 63 (663)
Q Consensus 43 ~~vi~i~G----GKTtla~~v~~~~ 63 (663)
..+|+|.| ||||+|+.+....
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l 27 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKL 27 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhC
Confidence 46788888 9999999999833
No 273
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=82.59 E-value=1.3 Score=48.50 Aligned_cols=41 Identities=10% Similarity=0.133 Sum_probs=34.3
Q ss_pred cccchhhcHHHHHHHH----hcCCCCceEEEEEec----chhhHHHHHhc
Q 037018 20 SSKTVKVKVKAVLVWL----FMLDSMWLQFLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 20 ~~~G~~~~~~~i~~~L----~~~~~~~~~vi~i~G----GKTtla~~v~~ 61 (663)
.++|+++.+++|++.| ...+. +-+++.++| ||||||+.|.+
T Consensus 77 d~yGlee~ieriv~~l~~Aa~gl~~-~~~IL~LvGPpG~GKSsLa~~la~ 125 (644)
T PRK15455 77 EFYGMEEAIEQIVSYFRHAAQGLEE-KKQILYLLGPVGGGKSSLAERLKS 125 (644)
T ss_pred cccCcHHHHHHHHHHHHHHHHhcCC-CCceEEEecCCCCCchHHHHHHHH
Confidence 4799999999999999 33333 567888988 99999999988
No 274
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=82.51 E-value=2.3 Score=44.04 Aligned_cols=42 Identities=10% Similarity=-0.097 Sum_probs=31.6
Q ss_pred cccchhhcHHHHHHHHhcCCC--CceEEEEEec-chhhHHHHHhc
Q 037018 20 SSKTVKVKVKAVLVWLFMLDS--MWLQFLTAVA-YKTAFVADIYN 61 (663)
Q Consensus 20 ~~~G~~~~~~~i~~~L~~~~~--~~~~vi~i~G-GKTtla~~v~~ 61 (663)
.++|....++++.+.+..-.. .++-+.|=.| ||+++|+.|+.
T Consensus 7 ~liG~S~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~ 51 (326)
T PRK11608 7 NLLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHY 51 (326)
T ss_pred ccEECCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHH
Confidence 488998888888887755322 2566666666 99999999987
No 275
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=82.41 E-value=4.9 Score=42.74 Aligned_cols=94 Identities=9% Similarity=0.080 Sum_probs=47.4
Q ss_pred EEEEEec----chhhHHHHHhcCCCccccCCCCccccCCceeeccCCCcceEeCCCcchhHHHHHHHHHHHhCC------
Q 037018 44 QFLTAVA----YKTAFVADIYNNNVDLSAMNPKLRVPKRFINKAFPVAFPVDVNCACNAQLNHILDDIIKSVMP------ 113 (663)
Q Consensus 44 ~vi~i~G----GKTtla~~v~~~~~~~~~~~~~~~~~~~F~~~~~~~~~~v~vs~~~~~~~~~l~~~i~~~l~~------ 113 (663)
..++|+| |||||++.+.+.. +. +..+. +.+..... .+.++.++....=..
T Consensus 138 q~~~I~G~sG~GKTtLl~~I~~~~----------~~----~~~vi-----~~iGer~~-ev~e~~~~~~~~~~~~~tvvv 197 (411)
T TIGR03496 138 QRMGIFAGSGVGKSTLLGMMARYT----------EA----DVVVV-----GLIGERGR-EVKEFIEDILGEEGLARSVVV 197 (411)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC----------CC----CEEEE-----EEEecChH-HHHHHHHHHhhCCCcceEEEE
Confidence 4466666 9999999999844 21 23334 44554432 145555555443111
Q ss_pred --CCCcchhhhh-HhhHHHHHHHHhh--cCCcEEEEEeCCCCChhhHHHH
Q 037018 114 --PSRVNVIISE-DYKLKTIILRDYL--TNKKDFIVLDDVFDDREIWNDL 158 (663)
Q Consensus 114 --~~~~~~~~~~-~~~l~~~~l~~~L--~~kr~LlVLDdv~~~~~~~~~l 158 (663)
..+.+..... .-.. .-.+-+++ +++.+|+++||+-.-.+...++
T Consensus 198 ~~tsd~~~~~r~~a~~~-a~tiAEyfr~~G~~Vll~~Dsltr~A~A~REi 246 (411)
T TIGR03496 198 AATADESPLMRLRAAFY-ATAIAEYFRDQGKDVLLLMDSLTRFAMAQREI 246 (411)
T ss_pred EECCCCCHHHHHHHHHH-HHHHHHHHHHCCCCEEEEEeChHHHHHHHHHH
Confidence 1111111111 1112 22233333 5899999999987623333333
No 276
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=82.36 E-value=4.2 Score=44.82 Aligned_cols=45 Identities=4% Similarity=-0.062 Sum_probs=28.2
Q ss_pred ccccchhhcHHHHHHHHh---cC------CC---CceEEEEEec-chhhHHHHHhcCC
Q 037018 19 CSSKTVKVKVKAVLVWLF---ML------DS---MWLQFLTAVA-YKTAFVADIYNNN 63 (663)
Q Consensus 19 ~~~~G~~~~~~~i~~~L~---~~------~~---~~~~vi~i~G-GKTtla~~v~~~~ 63 (663)
..++|.+..++++.+++. .. +. ..+-+.|=.| |||++|+++.+..
T Consensus 55 ~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~ 112 (495)
T TIGR01241 55 KDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA 112 (495)
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc
Confidence 468898887777666553 10 01 1233334444 9999999999833
No 277
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=82.18 E-value=4.6 Score=43.43 Aligned_cols=91 Identities=13% Similarity=0.163 Sum_probs=48.1
Q ss_pred CceEEEEEec-chhhHHHHHhcCCCccccCCCCccccCCc-eeeccCCCcceEeCCCcchhHHHHHHHHHHHhCCC----
Q 037018 41 MWLQFLTAVA-YKTAFVADIYNNNVDLSAMNPKLRVPKRF-INKAFPVAFPVDVNCACNAQLNHILDDIIKSVMPP---- 114 (663)
Q Consensus 41 ~~~~vi~i~G-GKTtla~~v~~~~~~~~~~~~~~~~~~~F-~~~~~~~~~~v~vs~~~~~~~~~l~~~i~~~l~~~---- 114 (663)
++..++|-.| |||||+..+..+. .... +.+++ +-+.+... .+.++.+++...=..+
T Consensus 145 QR~gIfa~~GvGKt~Ll~~i~~~~------------~~~~~~v~V~-----~liGER~r-Ev~efi~~~~~~~~l~rsvv 206 (463)
T PRK09280 145 GKIGLFGGAGVGKTVLIQELINNI------------AKEHGGYSVF-----AGVGERTR-EGNDLYHEMKESGVLDKTAL 206 (463)
T ss_pred CEEEeecCCCCChhHHHHHHHHHH------------HhcCCCEEEE-----EEeccCcH-HHHHHHHHHHhcCCcceeEE
Confidence 3444444444 9999999876633 2111 24556 65655433 1556666666532111
Q ss_pred ----CCcchhhhh-HhhHHHHHHHHhh---cCCcEEEEEeCCCC
Q 037018 115 ----SRVNVIISE-DYKLKTIILRDYL---TNKKDFIVLDDVFD 150 (663)
Q Consensus 115 ----~~~~~~~~~-~~~l~~~~l~~~L---~~kr~LlVLDdv~~ 150 (663)
.+.+..... .... .-.+-+++ ++|.+|+++||+-.
T Consensus 207 V~atsd~p~~~r~~a~~~-a~tiAEyfrd~~G~~VLll~DslTR 249 (463)
T PRK09280 207 VFGQMNEPPGARLRVALT-GLTMAEYFRDVEGQDVLLFIDNIFR 249 (463)
T ss_pred EEECCCCCHHHHHHHHHH-HHHHHHHHHHhcCCceEEEecchHH
Confidence 111111111 2222 33344555 67999999999875
No 278
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=82.02 E-value=5.2 Score=36.88 Aligned_cols=47 Identities=17% Similarity=0.239 Sum_probs=27.8
Q ss_pred HHHHhhcCCcEEEEEeCCCC--ChhhHHHHHhhCCCCCCCceEEEEEeC
Q 037018 131 ILRDYLTNKKDFIVLDDVFD--DREIWNDLEKFLPDNQNGSRVLILVTD 177 (663)
Q Consensus 131 ~l~~~L~~kr~LlVLDdv~~--~~~~~~~l~~~~~~~~~gskIiiT~r~ 177 (663)
.+-+.+-.+.=+++||+-.. |....+.+...+.....+.-||++|.+
T Consensus 106 ~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~ 154 (171)
T cd03228 106 AIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHR 154 (171)
T ss_pred HHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecC
Confidence 35556666777889999887 554444444444322235556666554
No 279
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=82.00 E-value=2.9 Score=41.40 Aligned_cols=48 Identities=23% Similarity=0.306 Sum_probs=27.3
Q ss_pred HHHHHhhcCCcEEEEEeCCCC--ChhhHHHHHhhCCCC--CCCceEEEEEeC
Q 037018 130 IILRDYLTNKKDFIVLDDVFD--DREIWNDLEKFLPDN--QNGSRVLILVTD 177 (663)
Q Consensus 130 ~~l~~~L~~kr~LlVLDdv~~--~~~~~~~l~~~~~~~--~~gskIiiT~r~ 177 (663)
-.+-+.+-.+.=+++||+.-+ |......+...+... ..|.-||++|.+
T Consensus 129 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~ 180 (251)
T PRK09544 129 VLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHD 180 (251)
T ss_pred HHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 334555666677889999887 544444444444321 115556666543
No 280
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=82.00 E-value=7.1 Score=37.11 Aligned_cols=50 Identities=14% Similarity=0.246 Sum_probs=30.6
Q ss_pred HHHHHhhcCCcEEEEEeCCCC--ChhhHHHHHhhCCC-CCCCceEEEEEeCCC
Q 037018 130 IILRDYLTNKKDFIVLDDVFD--DREIWNDLEKFLPD-NQNGSRVLILVTDPF 179 (663)
Q Consensus 130 ~~l~~~L~~kr~LlVLDdv~~--~~~~~~~l~~~~~~-~~~gskIiiT~r~~~ 179 (663)
-.+-+.+-.+.=+++||+.-. |....+.+...+.. ...|.-||++|.+..
T Consensus 134 l~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~ 186 (201)
T cd03231 134 VALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDL 186 (201)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCch
Confidence 334555555666889999877 66666666655542 223666777766543
No 281
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=81.97 E-value=6.7 Score=37.97 Aligned_cols=44 Identities=9% Similarity=-0.005 Sum_probs=29.4
Q ss_pred ceEEEEEec----chhhHHHHHhcCCCccccCCCCccccCCc------eeeccCCCcceEeCCCcchhHHHHH
Q 037018 42 WLQFLTAVA----YKTAFVADIYNNNVDLSAMNPKLRVPKRF------INKAFPVAFPVDVNCACNAQLNHIL 104 (663)
Q Consensus 42 ~~~vi~i~G----GKTtla~~v~~~~~~~~~~~~~~~~~~~F------~~~~~~~~~~v~vs~~~~~~~~~l~ 104 (663)
.-.++.|+| |||+||..+.-.. ...- ...+| +.....++ ..++.
T Consensus 18 ~g~v~~I~G~~GsGKT~l~~~ia~~~------------~~~~~~~g~~~~v~y-----i~~e~~~~--~~rl~ 71 (226)
T cd01393 18 TGRITEIFGEFGSGKTQLCLQLAVEA------------QLPGELGGLEGKVVY-----IDTEGAFR--PERLV 71 (226)
T ss_pred CCcEEEEeCCCCCChhHHHHHHHHHh------------hcccccCCCcceEEE-----EecCCCCC--HHHHH
Confidence 456777877 9999999987632 2222 45677 77766666 55544
No 282
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=81.77 E-value=1.1 Score=47.49 Aligned_cols=43 Identities=7% Similarity=-0.120 Sum_probs=30.3
Q ss_pred ccccchhhcHHHHHHHHhc---C-------CCCceEEEEEec----chhhHHHHHhc
Q 037018 19 CSSKTVKVKVKAVLVWLFM---L-------DSMWLQFLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 19 ~~~~G~~~~~~~i~~~L~~---~-------~~~~~~vi~i~G----GKTtla~~v~~ 61 (663)
..+.|+++.++++.+.+.. . +-...+-|-++| |||++|+++++
T Consensus 131 ~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~ 187 (389)
T PRK03992 131 EDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAH 187 (389)
T ss_pred HHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHH
Confidence 4678999999999987632 1 001223345555 99999999999
No 283
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=81.67 E-value=0.078 Score=50.16 Aligned_cols=86 Identities=12% Similarity=0.047 Sum_probs=73.4
Q ss_pred cCCCCCCcCeEeccCCCCccchhhhcccccccEeeccCCcccccchhhhcCcCCcEEEccCCCCCCCCCCCcCCCCCCcE
Q 037018 390 GLENLFHLKYLKLNIPSLNCLPSLLCTLLNLQTLEMPASYIDHSPEGIWMMQKLMHLNFGSINLPAPPKNYSSSLKNLIF 469 (663)
Q Consensus 390 ~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 469 (663)
.+......+.||++.+.+..+-..++.++.|..|+++.+.+..+|.+++.+..++++.+. ++.....|.+.+..++++.
T Consensus 37 ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~-~n~~~~~p~s~~k~~~~k~ 115 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASH-KNNHSQQPKSQKKEPHPKK 115 (326)
T ss_pred hhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhh-ccchhhCCccccccCCcch
Confidence 466778899999999988877778888899999999999999999999999999999998 6667788888888888888
Q ss_pred eeCcCCC
Q 037018 470 ISSLNPS 476 (663)
Q Consensus 470 L~l~~~~ 476 (663)
++.-.+.
T Consensus 116 ~e~k~~~ 122 (326)
T KOG0473|consen 116 NEQKKTE 122 (326)
T ss_pred hhhccCc
Confidence 8776654
No 284
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=81.57 E-value=8.7 Score=37.91 Aligned_cols=49 Identities=18% Similarity=0.232 Sum_probs=29.1
Q ss_pred HHHHHHhhcCCcEEEEEeCCCC--ChhhHHHHHhhCCCC--CCCceEEEEEeC
Q 037018 129 TIILRDYLTNKKDFIVLDDVFD--DREIWNDLEKFLPDN--QNGSRVLILVTD 177 (663)
Q Consensus 129 ~~~l~~~L~~kr~LlVLDdv~~--~~~~~~~l~~~~~~~--~~gskIiiT~r~ 177 (663)
.-.+-..|-.+.=+++||+.-. |...-..+...+... ..|.-||++|.+
T Consensus 123 rv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd 175 (246)
T cd03237 123 RVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHD 175 (246)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 3445566777778889999887 555555555444322 225555555543
No 285
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=81.48 E-value=12 Score=42.77 Aligned_cols=42 Identities=12% Similarity=-0.108 Sum_probs=32.3
Q ss_pred cccchhhcHHHHHHHHhcCCCCc-eEEEEEec-chhhHHHHHhc
Q 037018 20 SSKTVKVKVKAVLVWLFMLDSMW-LQFLTAVA-YKTAFVADIYN 61 (663)
Q Consensus 20 ~~~G~~~~~~~i~~~L~~~~~~~-~~vi~i~G-GKTtla~~v~~ 61 (663)
.++|-+..++.+.+++..+.-.. +-+.|-.| ||||+|+.+.+
T Consensus 19 dIiGQe~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk 62 (725)
T PRK07133 19 DIVGQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFAN 62 (725)
T ss_pred HhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHH
Confidence 68999999999999998764322 34555555 99999999877
No 286
>TIGR01041 ATP_syn_B_arch ATP synthase archaeal, B subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=81.45 E-value=5.5 Score=42.90 Aligned_cols=102 Identities=12% Similarity=0.177 Sum_probs=53.0
Q ss_pred ceEEEEEec-chhhHHHHHhcCCCccccCCCCccccCCce--eeccCCCcceEeCCCcchhHHHHHHHHHHHhCCC----
Q 037018 42 WLQFLTAVA-YKTAFVADIYNNNVDLSAMNPKLRVPKRFI--NKAFPVAFPVDVNCACNAQLNHILDDIIKSVMPP---- 114 (663)
Q Consensus 42 ~~~vi~i~G-GKTtla~~v~~~~~~~~~~~~~~~~~~~F~--~~~~~~~~~v~vs~~~~~~~~~l~~~i~~~l~~~---- 114 (663)
+..++|=.| |||||+..+.+.. .....+. .+++ +-+.+..+ .+.++.+++...=..+
T Consensus 143 R~gIfgg~G~GKs~L~~~ia~~~----------~ad~~~~~~v~V~-----~~iGERgr-Ev~efi~~~~~~~~l~rtvv 206 (458)
T TIGR01041 143 KLPIFSGSGLPHNELAAQIARQA----------TVRGEESEFAVVF-----AAMGITYE-EANFFMKDFEETGALERAVV 206 (458)
T ss_pred EEEeeCCCCCCHHHHHHHHHHhh----------cccCCCCceEEEE-----EEccccch-HHHHHHHHHHhcCCcceEEE
Confidence 444444344 9999999999965 3322121 4455 55555443 1555666665432111
Q ss_pred ----CCcchhhhh-HhhHHHHHHHHhhc---CCcEEEEEeCCCCChhhHHHHHh
Q 037018 115 ----SRVNVIISE-DYKLKTIILRDYLT---NKKDFIVLDDVFDDREIWNDLEK 160 (663)
Q Consensus 115 ----~~~~~~~~~-~~~l~~~~l~~~L~---~kr~LlVLDdv~~~~~~~~~l~~ 160 (663)
.+.+..... .-.. ..-+-++++ +|++|+++||+-.-.+.+.++..
T Consensus 207 v~atsd~p~~~R~~a~~~-a~tiAEyfr~d~G~~VLli~DslTR~A~A~REIsl 259 (458)
T TIGR01041 207 FLNLADDPAVERIVTPRM-ALTAAEYLAFEKDMHVLVILTDMTNYCEALREISA 259 (458)
T ss_pred EEECCCCCHHHHHHHHHH-HHHHHHHHHHccCCcEEEEEcChhHHHHHHHHHHH
Confidence 111111111 1222 233445554 78999999999763444444443
No 287
>PRK06936 type III secretion system ATPase; Provisional
Probab=81.39 E-value=7.3 Score=41.63 Aligned_cols=93 Identities=11% Similarity=0.097 Sum_probs=48.6
Q ss_pred EEEEEec----chhhHHHHHhcCCCccccCCCCccccCCceeeccCCCcceEeCCCcchhHHHHHHHHHHHhCCC-----
Q 037018 44 QFLTAVA----YKTAFVADIYNNNVDLSAMNPKLRVPKRFINKAFPVAFPVDVNCACNAQLNHILDDIIKSVMPP----- 114 (663)
Q Consensus 44 ~vi~i~G----GKTtla~~v~~~~~~~~~~~~~~~~~~~F~~~~~~~~~~v~vs~~~~~~~~~l~~~i~~~l~~~----- 114 (663)
..++|.| |||||++.+.+.. . -+.+++ +-+.+..++ ..++.++.+..-..+
T Consensus 163 q~~~I~G~sG~GKStLl~~Ia~~~----------~----~dv~V~-----~liGERgrE-v~ef~~~~l~~~~l~rtvvv 222 (439)
T PRK06936 163 QRMGIFAAAGGGKSTLLASLIRSA----------E----VDVTVL-----ALIGERGRE-VREFIESDLGEEGLRKAVLV 222 (439)
T ss_pred CEEEEECCCCCChHHHHHHHhcCC----------C----CCEEEE-----EEEccCcHH-HHHHHHHHhcccccceeEEE
Confidence 4455555 9999999999954 2 245666 666655441 444444433221110
Q ss_pred ---CCcchhhhh-----HhhHHHHHHHHhhcCCcEEEEEeCCCCChhhHHHHH
Q 037018 115 ---SRVNVIISE-----DYKLKTIILRDYLTNKKDFIVLDDVFDDREIWNDLE 159 (663)
Q Consensus 115 ---~~~~~~~~~-----~~~l~~~~l~~~L~~kr~LlVLDdv~~~~~~~~~l~ 159 (663)
.+.+...-. .-.. ++.+++ ++|.+|+++||+-.-.+...++.
T Consensus 223 ~atsd~p~~~R~~a~~~a~ti-AEyfrd--~G~~Vll~~DslTR~A~A~REis 272 (439)
T PRK06936 223 VATSDRPSMERAKAGFVATSI-AEYFRD--QGKRVLLLMDSVTRFARAQREIG 272 (439)
T ss_pred EECCCCCHHHHHHHHHHHHHH-HHHHHH--cCCCEEEeccchhHHHHHHHHHH
Confidence 111111111 1112 333333 58999999999976233344443
No 288
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=81.34 E-value=0.016 Score=62.60 Aligned_cols=199 Identities=22% Similarity=0.142 Sum_probs=103.1
Q ss_pred ccEEEecCCcCc-----ccCccCCCCCCcCeEeccCCCCc-----cchhhhccc-ccccEeeccCCcccc-----cchhh
Q 037018 374 LRVLNLGSAILY-----QYPPGLENLFHLKYLKLNIPSLN-----CLPSLLCTL-LNLQTLEMPASYIDH-----SPEGI 437 (663)
Q Consensus 374 Lr~L~L~~~~l~-----~lp~~~~~l~~L~~L~L~~~~i~-----~lp~~i~~L-~~L~~L~L~~~~l~~-----lp~~l 437 (663)
+..|.|.+|.+. .+-..+..+++|..|++++|++. .+-..+... ..|++|++..|.+.. +...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 777888888765 22344566778888888888776 122222222 456777777775432 34445
Q ss_pred hcCcCCcEEEccCCCCC----CCCCCCcC----CCCCCcEeeCcCCC------CCChhhcCCCCC-ccEEEeecCCCc--
Q 037018 438 WMMQKLMHLNFGSINLP----APPKNYSS----SLKNLIFISSLNPS------SCTPDILGRLPN-VQTLRISGDLSH-- 500 (663)
Q Consensus 438 ~~l~~L~~L~l~~~~~~----~~~~~~l~----~l~~L~~L~l~~~~------~~~~~~l~~l~~-L~~L~l~~~~~~-- 500 (663)
.....++.++++.|-+. ..++..+. ...++++|++.+|. ......+...++ +..|++..|...
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~ 248 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV 248 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence 56677777777733221 11122222 35566777776665 112233444444 555666666311
Q ss_pred cccchhhhhcCC-CCCCEEEEeecCccc-----cccccccccccCCCCceEEEEecccCCCCC----hhhhcCCCCCcEE
Q 037018 501 YHSGVSKSLCEL-HKLECLQLVHEGRMW-----QLSRMVLSEYQFPPCLTQLSLSNTQLMEDP----MPALEKLPHLEVL 570 (663)
Q Consensus 501 ~~~~~~~~l~~l-~~L~~L~l~~~~~l~-----~lp~~~~~l~~~l~~L~~L~L~~~~l~~~~----~~~l~~l~~L~~L 570 (663)
....+...+..+ ..++.++++. +.++ .+.. .+.. ++.++.|.+++|.+.... ...+.....+..+
T Consensus 249 g~~~L~~~l~~~~~~l~~l~l~~-nsi~~~~~~~L~~---~l~~-~~~l~~l~l~~n~l~~~~~~~~~~~l~~~~~~~~~ 323 (478)
T KOG4308|consen 249 GVEKLLPCLSVLSETLRVLDLSR-NSITEKGVRDLAE---VLVS-CRQLEELSLSNNPLTDYGVELLLEALERKTPLLHL 323 (478)
T ss_pred HHHHHHHHhcccchhhhhhhhhc-CCccccchHHHHH---HHhh-hHHHHHhhcccCccccHHHHHHHHHhhhcccchhh
Confidence 112223333333 4566666665 3333 2232 3334 566777777766654321 2223334445555
Q ss_pred EeecCCC
Q 037018 571 KLKQNSY 577 (663)
Q Consensus 571 ~L~~~~~ 577 (663)
.+.+++.
T Consensus 324 ~l~~~~~ 330 (478)
T KOG4308|consen 324 VLGGTGK 330 (478)
T ss_pred hccccCc
Confidence 5554443
No 289
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=81.33 E-value=1 Score=42.46 Aligned_cols=21 Identities=5% Similarity=0.020 Sum_probs=17.8
Q ss_pred eEEEEEec----chhhHHHHHhcCC
Q 037018 43 LQFLTAVA----YKTAFVADIYNNN 63 (663)
Q Consensus 43 ~~vi~i~G----GKTtla~~v~~~~ 63 (663)
..+|+|-| ||||||+.+.++.
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l 28 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHL 28 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHh
Confidence 46788888 9999999999955
No 290
>PRK05439 pantothenate kinase; Provisional
Probab=81.33 E-value=1.8 Score=44.01 Aligned_cols=21 Identities=5% Similarity=-0.172 Sum_probs=18.6
Q ss_pred CceEEEEEec----chhhHHHHHhc
Q 037018 41 MWLQFLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 41 ~~~~vi~i~G----GKTtla~~v~~ 61 (663)
...-+|||.| ||||+|+.+..
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~ 108 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQA 108 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3678999999 99999999887
No 291
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=81.31 E-value=0.79 Score=44.41 Aligned_cols=17 Identities=6% Similarity=-0.017 Sum_probs=14.9
Q ss_pred EEEEec----chhhHHHHHhc
Q 037018 45 FLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 45 vi~i~G----GKTtla~~v~~ 61 (663)
+|||.| ||||+|+.+..
T Consensus 1 IigI~G~sGSGKTTla~~L~~ 21 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQA 21 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHH
Confidence 477777 99999999998
No 292
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=81.24 E-value=7.9 Score=35.93 Aligned_cols=48 Identities=17% Similarity=0.275 Sum_probs=27.3
Q ss_pred HHHHHhhcCC--cEEEEEeCCCC--ChhhHHHHHhhCCCC-CCCceEEEEEeC
Q 037018 130 IILRDYLTNK--KDFIVLDDVFD--DREIWNDLEKFLPDN-QNGSRVLILVTD 177 (663)
Q Consensus 130 ~~l~~~L~~k--r~LlVLDdv~~--~~~~~~~l~~~~~~~-~~gskIiiT~r~ 177 (663)
-.+-+.+-.+ .=+++||+.-. |....+.+...+... ..|.-||++|.+
T Consensus 96 l~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~ 148 (176)
T cd03238 96 VKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHN 148 (176)
T ss_pred HHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 3444555556 66778899876 555555555544421 235556666543
No 293
>PRK05922 type III secretion system ATPase; Validated
Probab=81.21 E-value=7.9 Score=41.36 Aligned_cols=23 Identities=4% Similarity=0.143 Sum_probs=15.8
Q ss_pred cCCcEEEEEeCCCCChhhHHHHH
Q 037018 137 TNKKDFIVLDDVFDDREIWNDLE 159 (663)
Q Consensus 137 ~~kr~LlVLDdv~~~~~~~~~l~ 159 (663)
++|.+|+++||+-.-.+...++.
T Consensus 245 ~G~~VLl~~DslTR~A~A~REis 267 (434)
T PRK05922 245 QGHRVLFIMDSLSRWIAALQEVA 267 (434)
T ss_pred cCCCEEEeccchhHHHHHHHHHH
Confidence 47999999999976233334443
No 294
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=80.92 E-value=5.5 Score=41.30 Aligned_cols=31 Identities=10% Similarity=-0.034 Sum_probs=23.4
Q ss_pred HHHHhcCCCCceEEEEEec----chhhHHHHHhcC
Q 037018 32 LVWLFMLDSMWLQFLTAVA----YKTAFVADIYNN 62 (663)
Q Consensus 32 ~~~L~~~~~~~~~vi~i~G----GKTtla~~v~~~ 62 (663)
++.|...+....+.++||| |||.+|++|++.
T Consensus 137 kn~l~~~~ik~PlgllL~GPPGcGKTllAraiA~e 171 (413)
T PLN00020 137 KNFLALPNIKVPLILGIWGGKGQGKSFQCELVFKK 171 (413)
T ss_pred hhhhhccCCCCCeEEEeeCCCCCCHHHHHHHHHHH
Confidence 3444443334678999999 999999999993
No 295
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=80.72 E-value=2.8 Score=44.97 Aligned_cols=43 Identities=7% Similarity=-0.072 Sum_probs=30.4
Q ss_pred ccccchhhcHHHHHHHHhcC----------CCCceEEEEEec----chhhHHHHHhc
Q 037018 19 CSSKTVKVKVKAVLVWLFML----------DSMWLQFLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 19 ~~~~G~~~~~~~i~~~L~~~----------~~~~~~vi~i~G----GKTtla~~v~~ 61 (663)
..+.|.+..++++.+.+... +....+-+-++| |||++|++|.+
T Consensus 183 ~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~ 239 (438)
T PTZ00361 183 ADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVAN 239 (438)
T ss_pred HHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999998877421 001223355667 99999999999
No 296
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=80.70 E-value=1.4 Score=26.13 Aligned_cols=21 Identities=29% Similarity=0.534 Sum_probs=16.4
Q ss_pred cccccEeeccCCcccccchhh
Q 037018 417 LLNLQTLEMPASYIDHSPEGI 437 (663)
Q Consensus 417 L~~L~~L~L~~~~l~~lp~~l 437 (663)
+++|+.|++++|.+..+|...
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 467888888888888887764
No 297
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=80.70 E-value=1.4 Score=26.13 Aligned_cols=21 Identities=29% Similarity=0.534 Sum_probs=16.4
Q ss_pred cccccEeeccCCcccccchhh
Q 037018 417 LLNLQTLEMPASYIDHSPEGI 437 (663)
Q Consensus 417 L~~L~~L~L~~~~l~~lp~~l 437 (663)
+++|+.|++++|.+..+|...
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 467888888888888887764
No 298
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=80.63 E-value=2.8 Score=37.87 Aligned_cols=16 Identities=13% Similarity=0.073 Sum_probs=12.6
Q ss_pred EEEec-chhhHHHHHhc
Q 037018 46 LTAVA-YKTAFVADIYN 61 (663)
Q Consensus 46 i~i~G-GKTtla~~v~~ 61 (663)
.|-.| ||||+|+.+..
T Consensus 5 ~G~~G~GKT~l~~~i~~ 21 (165)
T cd01120 5 FGPTGSGKTTLALQLAL 21 (165)
T ss_pred eCCCCCCHHHHHHHHHH
Confidence 33344 99999999988
No 299
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=80.58 E-value=1.1 Score=40.73 Aligned_cols=19 Identities=21% Similarity=0.373 Sum_probs=17.0
Q ss_pred eEEEEEec----chhhHHHHHhc
Q 037018 43 LQFLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 43 ~~vi~i~G----GKTtla~~v~~ 61 (663)
..|++|+| |||||+.++-.
T Consensus 2 ~~Il~ivG~k~SGKTTLie~lv~ 24 (161)
T COG1763 2 MKILGIVGYKNSGKTTLIEKLVR 24 (161)
T ss_pred CcEEEEEecCCCChhhHHHHHHH
Confidence 36899999 99999999987
No 300
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=80.57 E-value=0.91 Score=42.59 Aligned_cols=18 Identities=11% Similarity=-0.016 Sum_probs=15.0
Q ss_pred EEEEec----chhhHHHHHhcC
Q 037018 45 FLTAVA----YKTAFVADIYNN 62 (663)
Q Consensus 45 vi~i~G----GKTtla~~v~~~ 62 (663)
||+|.| ||||+|+.+...
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~ 22 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRI 22 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 467777 999999999983
No 301
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=80.49 E-value=9.1 Score=41.08 Aligned_cols=23 Identities=9% Similarity=0.210 Sum_probs=16.0
Q ss_pred cCCcEEEEEeCCCCChhhHHHHH
Q 037018 137 TNKKDFIVLDDVFDDREIWNDLE 159 (663)
Q Consensus 137 ~~kr~LlVLDdv~~~~~~~~~l~ 159 (663)
++|.+|+++||+-.-.+...++.
T Consensus 256 ~G~~VLl~~DslTR~A~A~REis 278 (451)
T PRK05688 256 KGKNVLLLMDSLTRFAQAQREIA 278 (451)
T ss_pred CCCCEEEEecchhHHHHHHHHHH
Confidence 58999999999976333344443
No 302
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=80.33 E-value=11 Score=40.59 Aligned_cols=45 Identities=11% Similarity=0.054 Sum_probs=30.7
Q ss_pred ccccchhh---cHHHHHHHHhcCCC---------CceEEEEEec-chhhHHHHHhcCC
Q 037018 19 CSSKTVKV---KVKAVLVWLFMLDS---------MWLQFLTAVA-YKTAFVADIYNNN 63 (663)
Q Consensus 19 ~~~~G~~~---~~~~i~~~L~~~~~---------~~~~vi~i~G-GKTtla~~v~~~~ 63 (663)
..+.|.|+ +.++|++.|.+... .++-.+|=-| |||-||++|...+
T Consensus 304 ~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA 361 (752)
T KOG0734|consen 304 EDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEA 361 (752)
T ss_pred ccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhccc
Confidence 34567755 55666677765432 2455666666 9999999999976
No 303
>COG3172 NadR Predicted ATPase/kinase involved in NAD metabolism [Coenzyme metabolism]
Probab=80.30 E-value=1.1 Score=40.02 Aligned_cols=19 Identities=16% Similarity=0.287 Sum_probs=17.5
Q ss_pred eEEEEEec----chhhHHHHHhc
Q 037018 43 LQFLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 43 ~~vi~i~G----GKTtla~~v~~ 61 (663)
+++|+|.| ||||||+++.+
T Consensus 8 ~K~VailG~ESsGKStLv~kLA~ 30 (187)
T COG3172 8 VKTVAILGGESSGKSTLVNKLAN 30 (187)
T ss_pred heeeeeecCcccChHHHHHHHHH
Confidence 68899999 99999999888
No 304
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=80.25 E-value=4.9 Score=44.48 Aligned_cols=67 Identities=15% Similarity=-0.012 Sum_probs=41.4
Q ss_pred ccccccchhhcHHHHHHHH---hcCCC---------CceEEEEEec-chhhHHHHHhcCCCccccCCCCccccCCceeec
Q 037018 17 TSCSSKTVKVKVKAVLVWL---FMLDS---------MWLQFLTAVA-YKTAFVADIYNNNVDLSAMNPKLRVPKRFINKA 83 (663)
Q Consensus 17 ~~~~~~G~~~~~~~i~~~L---~~~~~---------~~~~vi~i~G-GKTtla~~v~~~~~~~~~~~~~~~~~~~F~~~~ 83 (663)
.-...-|.|+.++++.+.+ ...+. ..+..+|=-| |||.||+++..++ .|...|-..-
T Consensus 148 ~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA----------~VPFf~iSGS 217 (596)
T COG0465 148 TFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEA----------GVPFFSISGS 217 (596)
T ss_pred ChhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhccc----------CCCceeccch
Confidence 3345678877776666555 33221 1344444444 9999999999988 7765555555
Q ss_pred cCCCcceEeC
Q 037018 84 FPVAFPVDVN 93 (663)
Q Consensus 84 ~~~~~~v~vs 93 (663)
++++..|.|.
T Consensus 218 ~FVemfVGvG 227 (596)
T COG0465 218 DFVEMFVGVG 227 (596)
T ss_pred hhhhhhcCCC
Confidence 5444445544
No 305
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=80.18 E-value=6.4 Score=42.28 Aligned_cols=21 Identities=24% Similarity=0.102 Sum_probs=16.2
Q ss_pred eEEEEEec----chhhHHHHHhcCC
Q 037018 43 LQFLTAVA----YKTAFVADIYNNN 63 (663)
Q Consensus 43 ~~vi~i~G----GKTtla~~v~~~~ 63 (663)
-.+++|+| |||||++.+.+..
T Consensus 158 Gq~i~I~G~sG~GKStLl~~I~~~~ 182 (438)
T PRK07721 158 GQRVGIFAGSGVGKSTLMGMIARNT 182 (438)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccc
Confidence 35566666 9999999998844
No 306
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=80.07 E-value=6.5 Score=39.33 Aligned_cols=87 Identities=15% Similarity=0.053 Sum_probs=54.4
Q ss_pred CceEEEEEec----chhhHHHHHhcCCCccccCCCCccccCCceeeccCCCcceEeCCCcchhHHHHHHHHHHH-hCC--
Q 037018 41 MWLQFLTAVA----YKTAFVADIYNNNVDLSAMNPKLRVPKRFINKAFPVAFPVDVNCACNAQLNHILDDIIKS-VMP-- 113 (663)
Q Consensus 41 ~~~~vi~i~G----GKTtla~~v~~~~~~~~~~~~~~~~~~~F~~~~~~~~~~v~vs~~~~~~~~~l~~~i~~~-l~~-- 113 (663)
+.-+++-|+| ||||+|-+++- .+...-...+| ++--+.++ +.++. ++... +..
T Consensus 58 ~~g~ItEiyG~~gsGKT~lal~~~~------------~aq~~g~~a~f-----IDtE~~l~--p~r~~-~l~~~~~d~l~ 117 (279)
T COG0468 58 PRGRITEIYGPESSGKTTLALQLVA------------NAQKPGGKAAF-----IDTEHALD--PERAK-QLGVDLLDNLL 117 (279)
T ss_pred ccceEEEEecCCCcchhhHHHHHHH------------HhhcCCCeEEE-----EeCCCCCC--HHHHH-HHHHhhhccee
Confidence 5778999999 99999999888 44555558899 98888888 66644 34444 221
Q ss_pred -CCCcchhhhhHhhHHHHHHHHhhcCCcEEEEEeCCCC
Q 037018 114 -PSRVNVIISEDYKLKTIILRDYLTNKKDFIVLDDVFD 150 (663)
Q Consensus 114 -~~~~~~~~~~~~~l~~~~l~~~L~~kr~LlVLDdv~~ 150 (663)
..... .+. .-.+ +..+.+....+=-|+|+|-|-.
T Consensus 118 v~~~~~-~e~-q~~i-~~~~~~~~~~~i~LvVVDSvaa 152 (279)
T COG0468 118 VSQPDT-GEQ-QLEI-AEKLARSGAEKIDLLVVDSVAA 152 (279)
T ss_pred EecCCC-HHH-HHHH-HHHHHHhccCCCCEEEEecCcc
Confidence 11100 111 2333 3344444444456999999876
No 307
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=80.03 E-value=6.2 Score=40.30 Aligned_cols=49 Identities=10% Similarity=0.188 Sum_probs=29.1
Q ss_pred HHHHHhhcCCcEEEEEeCCCC--ChhhHHHHHhhCCCCCCCceEEEEEeCC
Q 037018 130 IILRDYLTNKKDFIVLDDVFD--DREIWNDLEKFLPDNQNGSRVLILVTDP 178 (663)
Q Consensus 130 ~~l~~~L~~kr~LlVLDdv~~--~~~~~~~l~~~~~~~~~gskIiiT~r~~ 178 (663)
-.+-..+-++.=+++||+--. |....+.+...+.....|.-||+||.+.
T Consensus 142 v~la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l 192 (301)
T TIGR03522 142 VGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIM 192 (301)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCH
Confidence 345566667778889999887 5444444443333222356677776643
No 308
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=79.97 E-value=2.2 Score=43.07 Aligned_cols=20 Identities=5% Similarity=-0.082 Sum_probs=17.2
Q ss_pred ceEEEEEec----chhhHHHHHhc
Q 037018 42 WLQFLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 42 ~~~vi~i~G----GKTtla~~v~~ 61 (663)
...+|||.| ||||+|+.+-.
T Consensus 61 ~p~IIGIaG~~GSGKSTlar~L~~ 84 (290)
T TIGR00554 61 IPYIISIAGSVAVGKSTTARILQA 84 (290)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 568999999 99999987755
No 309
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=79.97 E-value=1.9 Score=37.79 Aligned_cols=20 Identities=15% Similarity=0.114 Sum_probs=16.5
Q ss_pred EEEEEec----chhhHHHHHhcCC
Q 037018 44 QFLTAVA----YKTAFVADIYNNN 63 (663)
Q Consensus 44 ~vi~i~G----GKTtla~~v~~~~ 63 (663)
.+|.+.| ||||+++.+.+..
T Consensus 23 ~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 23 TVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHc
Confidence 4677777 9999999999954
No 310
>PRK04296 thymidine kinase; Provisional
Probab=79.92 E-value=2.7 Score=39.65 Aligned_cols=109 Identities=14% Similarity=0.062 Sum_probs=53.6
Q ss_pred EEEEec----chhhHHHHHhcCCCccccCCCCccccCCceeeccCCCcceEeCCCcchhHHHHHHHHHHHhCCCCCcchh
Q 037018 45 FLTAVA----YKTAFVADIYNNNVDLSAMNPKLRVPKRFINKAFPVAFPVDVNCACNAQLNHILDDIIKSVMPPSRVNVI 120 (663)
Q Consensus 45 vi~i~G----GKTtla~~v~~~~~~~~~~~~~~~~~~~F~~~~~~~~~~v~vs~~~~~~~~~l~~~i~~~l~~~~~~~~~ 120 (663)
++-|.| ||||+|..+.. +...+-...+. + ...++ .......++++++.+......
T Consensus 4 i~litG~~GsGKTT~~l~~~~------------~~~~~g~~v~i-----~--k~~~d--~~~~~~~i~~~lg~~~~~~~~ 62 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQRAY------------NYEERGMKVLV-----F--KPAID--DRYGEGKVVSRIGLSREAIPV 62 (190)
T ss_pred EEEEECCCCCHHHHHHHHHHH------------HHHHcCCeEEE-----E--ecccc--ccccCCcEecCCCCcccceEe
Confidence 444555 99999998887 43333332233 2 11112 222233455555432211001
Q ss_pred hhhHhhHHHHHHHHhhcCCcEEEEEeCCCC-ChhhHHHHHhhCCCCCCCceEEEEEeCCC
Q 037018 121 ISEDYKLKTIILRDYLTNKKDFIVLDDVFD-DREIWNDLEKFLPDNQNGSRVLILVTDPF 179 (663)
Q Consensus 121 ~~~~~~l~~~~l~~~L~~kr~LlVLDdv~~-~~~~~~~l~~~~~~~~~gskIiiT~r~~~ 179 (663)
.. .+++ ...+++ ..++.-+||+|.+-- +.++..++...+ ...|-.||+|.++..
T Consensus 63 ~~-~~~~-~~~~~~-~~~~~dvviIDEaq~l~~~~v~~l~~~l--~~~g~~vi~tgl~~~ 117 (190)
T PRK04296 63 SS-DTDI-FELIEE-EGEKIDCVLIDEAQFLDKEQVVQLAEVL--DDLGIPVICYGLDTD 117 (190)
T ss_pred CC-hHHH-HHHHHh-hCCCCCEEEEEccccCCHHHHHHHHHHH--HHcCCeEEEEecCcc
Confidence 11 2333 344444 233455899999865 233233333322 235788999977643
No 311
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=79.89 E-value=1.1 Score=38.74 Aligned_cols=17 Identities=12% Similarity=0.059 Sum_probs=13.9
Q ss_pred EEEEec-chhhHHHHHhc
Q 037018 45 FLTAVA-YKTAFVADIYN 61 (663)
Q Consensus 45 vi~i~G-GKTtla~~v~~ 61 (663)
+.|+.| ||||+|+++.+
T Consensus 3 i~G~~GsGKtTia~~L~~ 20 (129)
T PF13238_consen 3 ISGIPGSGKTTIAKELAE 20 (129)
T ss_dssp EEESTTSSHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 445555 99999999998
No 312
>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]
Probab=79.89 E-value=4.4 Score=36.12 Aligned_cols=20 Identities=5% Similarity=0.006 Sum_probs=17.5
Q ss_pred ceEEEEEec-chhhHHHHHhc
Q 037018 42 WLQFLTAVA-YKTAFVADIYN 61 (663)
Q Consensus 42 ~~~vi~i~G-GKTtla~~v~~ 61 (663)
-+-|+|+.| ||||+++++-+
T Consensus 14 ~i~vmGvsGsGKSTigk~L~~ 34 (191)
T KOG3354|consen 14 VIVVMGVSGSGKSTIGKALSE 34 (191)
T ss_pred eEEEEecCCCChhhHHHHHHH
Confidence 367788888 99999999999
No 313
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=79.77 E-value=1.1 Score=34.20 Aligned_cols=16 Identities=6% Similarity=0.131 Sum_probs=13.5
Q ss_pred EEEec----chhhHHHHHhc
Q 037018 46 LTAVA----YKTAFVADIYN 61 (663)
Q Consensus 46 i~i~G----GKTtla~~v~~ 61 (663)
|+|.| ||||+|+.+.+
T Consensus 2 i~i~G~~gsGKst~~~~l~~ 21 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAE 21 (69)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 55666 99999999988
No 314
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=79.67 E-value=13 Score=33.95 Aligned_cols=46 Identities=24% Similarity=0.359 Sum_probs=25.6
Q ss_pred HHHHHhhcCCcEEEEEeCCCC--ChhhHHHHHhhCCCCCCCceEEEEEeC
Q 037018 130 IILRDYLTNKKDFIVLDDVFD--DREIWNDLEKFLPDNQNGSRVLILVTD 177 (663)
Q Consensus 130 ~~l~~~L~~kr~LlVLDdv~~--~~~~~~~l~~~~~~~~~gskIiiT~r~ 177 (663)
-.+-+.+-.+.=+++||+--. |....+.+...+... +.-||++|.+
T Consensus 100 v~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~ 147 (166)
T cd03223 100 LAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHR 147 (166)
T ss_pred HHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCC
Confidence 344555656666778999776 544455444444322 3445555543
No 315
>PLN02318 phosphoribulokinase/uridine kinase
Probab=79.59 E-value=2.1 Score=47.21 Aligned_cols=28 Identities=18% Similarity=0.188 Sum_probs=21.8
Q ss_pred HHHhcCCCCceEEEEEec----chhhHHHHHhc
Q 037018 33 VWLFMLDSMWLQFLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 33 ~~L~~~~~~~~~vi~i~G----GKTtla~~v~~ 61 (663)
+.|..... +..+|||.| ||||||+.+..
T Consensus 56 qlL~~~~~-~riIIGIaGpSGSGKTTLAk~Lag 87 (656)
T PLN02318 56 QLLAQKND-GIILVGVAGPSGAGKTVFTEKVLN 87 (656)
T ss_pred HHHHhcCC-CeEEEEEECCCCCcHHHHHHHHHh
Confidence 34443333 688999999 99999999987
No 316
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=79.55 E-value=26 Score=37.09 Aligned_cols=47 Identities=11% Similarity=0.164 Sum_probs=31.9
Q ss_pred HhhHHHHHHHHhhcCCcEEEEEeCCCCChhhHHHHHhhCCCCCCCceEEEE
Q 037018 124 DYKLKTIILRDYLTNKKDFIVLDDVFDDREIWNDLEKFLPDNQNGSRVLIL 174 (663)
Q Consensus 124 ~~~l~~~~l~~~L~~kr~LlVLDdv~~~~~~~~~l~~~~~~~~~gskIiiT 174 (663)
.+++ ..+++.++-.-.|+|+|-.-. ++--....+|...-.=+-||+|
T Consensus 201 m~El--~~Ik~~~~P~E~llVvDam~G--QdA~~~A~aF~e~l~itGvIlT 247 (451)
T COG0541 201 MDEL--KEIKEVINPDETLLVVDAMIG--QDAVNTAKAFNEALGITGVILT 247 (451)
T ss_pred HHHH--HHHHhhcCCCeEEEEEecccc--hHHHHHHHHHhhhcCCceEEEE
Confidence 4455 556777788889999988765 4444555566655545668888
No 317
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=79.44 E-value=0.02 Score=61.88 Aligned_cols=205 Identities=17% Similarity=0.084 Sum_probs=125.4
Q ss_pred ccEEEeecCccccccccchhHHhcCCCcccEEEecCCcCc-----ccCccCCCC-CCcCeEeccCCCCc-----cchhhh
Q 037018 346 LQSFLNHTLESDRLALIDCENFCKKFKHLRVLNLGSAILY-----QYPPGLENL-FHLKYLKLNIPSLN-----CLPSLL 414 (663)
Q Consensus 346 lr~L~l~~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~l~-----~lp~~~~~l-~~L~~L~L~~~~i~-----~lp~~i 414 (663)
+..+.+..+....-....+-..+...+.|..|++++|.+. .+-..+... +.|++|.+..|.++ .+...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 6666666665532122233333489999999999999876 122233333 57888888888776 456777
Q ss_pred cccccccEeeccCCcccc-----cchhhh----cCcCCcEEEccCCCCCC----CCCCCcCCCCC-CcEeeCcCCC-C--
Q 037018 415 CTLLNLQTLEMPASYIDH-----SPEGIW----MMQKLMHLNFGSINLPA----PPKNYSSSLKN-LIFISSLNPS-S-- 477 (663)
Q Consensus 415 ~~L~~L~~L~L~~~~l~~-----lp~~l~----~l~~L~~L~l~~~~~~~----~~~~~l~~l~~-L~~L~l~~~~-~-- 477 (663)
.....++.++++.|.+.. ++..+. ...++++|++.++..+. ..-..+...+. +.+|++..+. .
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~ 248 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV 248 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence 778899999999995422 233333 46789999998443321 11112334444 5668887776 2
Q ss_pred ---CChhhcCCC-CCccEEEeecCC--CccccchhhhhcCCCCCCEEEEeecCcccccccc--ccccccCCCCceEEEEe
Q 037018 478 ---CTPDILGRL-PNVQTLRISGDL--SHYHSGVSKSLCELHKLECLQLVHEGRMWQLSRM--VLSEYQFPPCLTQLSLS 549 (663)
Q Consensus 478 ---~~~~~l~~l-~~L~~L~l~~~~--~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~lp~~--~~~l~~~l~~L~~L~L~ 549 (663)
.....+..+ ..++++++..|. ......+...+..++.++.|.+.. +.+..-... +..+.. ...+.++.+.
T Consensus 249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~-n~l~~~~~~~~~~~l~~-~~~~~~~~l~ 326 (478)
T KOG4308|consen 249 GVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSN-NPLTDYGVELLLEALER-KTPLLHLVLG 326 (478)
T ss_pred HHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhccc-CccccHHHHHHHHHhhh-cccchhhhcc
Confidence 223344555 678899999885 223344566677788999999996 666521100 002223 4556667777
Q ss_pred ccc
Q 037018 550 NTQ 552 (663)
Q Consensus 550 ~~~ 552 (663)
++.
T Consensus 327 ~~~ 329 (478)
T KOG4308|consen 327 GTG 329 (478)
T ss_pred ccC
Confidence 554
No 318
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=79.41 E-value=1.1 Score=42.00 Aligned_cols=17 Identities=6% Similarity=0.112 Sum_probs=14.1
Q ss_pred EEEEec----chhhHHHHHhc
Q 037018 45 FLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 45 vi~i~G----GKTtla~~v~~ 61 (663)
|+.|.| ||||+++.|.-
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~ 21 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGL 21 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHH
Confidence 356788 99999999883
No 319
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=79.22 E-value=12 Score=36.35 Aligned_cols=49 Identities=18% Similarity=0.373 Sum_probs=30.5
Q ss_pred HHHHHHhhcCCcEEEEEeCCCC--ChhhHHHHHhhCCCC-CCCceEEEEEeC
Q 037018 129 TIILRDYLTNKKDFIVLDDVFD--DREIWNDLEKFLPDN-QNGSRVLILVTD 177 (663)
Q Consensus 129 ~~~l~~~L~~kr~LlVLDdv~~--~~~~~~~l~~~~~~~-~~gskIiiT~r~ 177 (663)
.-.+-+.+-.+.-+++||+--. |....+.+...+... ..|.-||++|.+
T Consensus 121 rv~laral~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~tvii~sH~ 172 (223)
T TIGR03771 121 RVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMTTHD 172 (223)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 3455666777788889999877 555555555544421 236666666554
No 320
>PRK06547 hypothetical protein; Provisional
Probab=79.18 E-value=2.4 Score=39.29 Aligned_cols=21 Identities=10% Similarity=-0.042 Sum_probs=17.8
Q ss_pred ceEEEEEec----chhhHHHHHhcC
Q 037018 42 WLQFLTAVA----YKTAFVADIYNN 62 (663)
Q Consensus 42 ~~~vi~i~G----GKTtla~~v~~~ 62 (663)
...+|+|.| ||||+|+.+.+.
T Consensus 14 ~~~~i~i~G~~GsGKTt~a~~l~~~ 38 (172)
T PRK06547 14 GMITVLIDGRSGSGKTTLAGALAAR 38 (172)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 567888888 999999999873
No 321
>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []. Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation
Probab=79.10 E-value=0.83 Score=41.26 Aligned_cols=40 Identities=13% Similarity=0.215 Sum_probs=28.9
Q ss_pred EEEec-chhhHHHHHhcCCCccccCCCCccccCCceeeccCCCcceEeC-----CCcchhHHHHHHHHHHHh
Q 037018 46 LTAVA-YKTAFVADIYNNNVDLSAMNPKLRVPKRFINKAFPVAFPVDVN-----CACNAQLNHILDDIIKSV 111 (663)
Q Consensus 46 i~i~G-GKTtla~~v~~~~~~~~~~~~~~~~~~~F~~~~~~~~~~v~vs-----~~~~~~~~~l~~~i~~~l 111 (663)
|++.| ||||+|.++.+ .|.. | .+|. .+ . ..++.+.+++.+
T Consensus 5 IAtiGCGKTTva~aL~~----------------LFg~--w-----gHvQnDnI~~k-~--~~~f~~~~l~~L 50 (168)
T PF08303_consen 5 IATIGCGKTTVALALSN----------------LFGE--W-----GHVQNDNITGK-R--KPKFIKAVLELL 50 (168)
T ss_pred ecCCCcCHHHHHHHHHH----------------HcCC--C-----CccccCCCCCC-C--HHHHHHHHHHHH
Confidence 67789 99999999888 2443 5 4332 33 4 778888888888
No 322
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=79.08 E-value=6.2 Score=42.28 Aligned_cols=101 Identities=8% Similarity=0.113 Sum_probs=55.0
Q ss_pred CceEEEEEec-chhhHHHHHhcCCCccccCCCCccccCCceeeccCCCcceEeCCCcchhHHHHHHHHHHHhCCC-----
Q 037018 41 MWLQFLTAVA-YKTAFVADIYNNNVDLSAMNPKLRVPKRFINKAFPVAFPVDVNCACNAQLNHILDDIIKSVMPP----- 114 (663)
Q Consensus 41 ~~~~vi~i~G-GKTtla~~v~~~~~~~~~~~~~~~~~~~F~~~~~~~~~~v~vs~~~~~~~~~l~~~i~~~l~~~----- 114 (663)
++..++|-.| |||+|+..+.++. . +.+-+.+++ +-+.+... ...++.+++...=..+
T Consensus 139 Qr~~Ifg~~G~GKt~l~~~~~~~~----------~-~~~~~v~V~-----~~iGeR~r-Ev~e~~~~~~~~~~l~rtvvv 201 (449)
T TIGR03305 139 GKAGLFGGAGVGKTVLLTEMIHNM----------V-GQHQGVSIF-----CGIGERCR-EGEELYREMKEAGVLDNTVMV 201 (449)
T ss_pred CEEEeecCCCCChhHHHHHHHHHH----------H-hcCCCEEEE-----EEeccCcH-HHHHHHHHHhhccccceEEEE
Confidence 3444444445 9999999987743 2 223467778 77766544 1455666655431111
Q ss_pred ---CCcchhhhh-HhhHHHHHHHHhh---cCCcEEEEEeCCCCChhhHHHHH
Q 037018 115 ---SRVNVIISE-DYKLKTIILRDYL---TNKKDFIVLDDVFDDREIWNDLE 159 (663)
Q Consensus 115 ---~~~~~~~~~-~~~l~~~~l~~~L---~~kr~LlVLDdv~~~~~~~~~l~ 159 (663)
.+.+..... .-.. +-.+-+++ +++.+|+++||+-.-.+.+.++.
T Consensus 202 ~~ts~~~~~~r~~~~~~-a~tiAEyfrd~~G~~VLl~~DslTR~A~A~REis 252 (449)
T TIGR03305 202 FGQMNEPPGARFRVGHT-ALTMAEYFRDDEKQDVLLLIDNIFRFIQAGSEVS 252 (449)
T ss_pred EeCCCCCHHHHHHHHHH-HHHHHHHHHHhcCCceEEEecChHHHHHHHHHHH
Confidence 111111222 2222 34455555 46999999999976233344443
No 323
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=78.93 E-value=14 Score=40.83 Aligned_cols=45 Identities=24% Similarity=0.391 Sum_probs=30.8
Q ss_pred HHHHHHhhcCCcEEEEEeCCCC--ChhhHHHHHhhCCCCCCCceEEEE
Q 037018 129 TIILRDYLTNKKDFIVLDDVFD--DREIWNDLEKFLPDNQNGSRVLIL 174 (663)
Q Consensus 129 ~~~l~~~L~~kr~LlVLDdv~~--~~~~~~~l~~~~~~~~~gskIiiT 174 (663)
.-.|-+.|-.+.=+++||.--+ |.+....+...+. ..+|.-||||
T Consensus 161 Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~-~~~gtviiVS 207 (530)
T COG0488 161 RVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLK-RYPGTVIVVS 207 (530)
T ss_pred HHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHH-hCCCcEEEEe
Confidence 5567777888999999999887 6555555555555 3346555555
No 324
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=78.91 E-value=7.4 Score=36.45 Aligned_cols=50 Identities=14% Similarity=0.070 Sum_probs=33.9
Q ss_pred HHHHHHhhcCCcE-EEEEeCCCC----ChhhHHHHHhhCCCCCCCceEEEEEeCC
Q 037018 129 TIILRDYLTNKKD-FIVLDDVFD----DREIWNDLEKFLPDNQNGSRVLILVTDP 178 (663)
Q Consensus 129 ~~~l~~~L~~kr~-LlVLDdv~~----~~~~~~~l~~~~~~~~~gskIiiT~r~~ 178 (663)
-...++.+...+| +||||.+.. ..-..+++...+....++.-||+|-|..
T Consensus 104 ~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~ 158 (191)
T PRK05986 104 WEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGA 158 (191)
T ss_pred HHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCC
Confidence 4556666665555 999999976 1333566666665555677899997755
No 325
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=78.91 E-value=1.5 Score=40.39 Aligned_cols=20 Identities=20% Similarity=0.290 Sum_probs=17.9
Q ss_pred ceEEEEEec----chhhHHHHHhc
Q 037018 42 WLQFLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 42 ~~~vi~i~G----GKTtla~~v~~ 61 (663)
...+++|+| |||||++++..
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~ 28 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIP 28 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHH
Confidence 467899999 99999999998
No 326
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=78.86 E-value=4.3 Score=37.14 Aligned_cols=48 Identities=15% Similarity=0.213 Sum_probs=29.3
Q ss_pred HHHHHhhcCCcEEEEEeCCCC--ChhhHHHHHhhCCCC-CCCceEEEEEeC
Q 037018 130 IILRDYLTNKKDFIVLDDVFD--DREIWNDLEKFLPDN-QNGSRVLILVTD 177 (663)
Q Consensus 130 ~~l~~~L~~kr~LlVLDdv~~--~~~~~~~l~~~~~~~-~~gskIiiT~r~ 177 (663)
-.+-+.+-.+.=+++||+.-. |....+.+...+... .+|.-||++|.+
T Consensus 91 l~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~ 141 (163)
T cd03216 91 VEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHR 141 (163)
T ss_pred HHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 345566666777888999887 655555555555422 235566666554
No 327
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=78.84 E-value=2.1 Score=48.24 Aligned_cols=74 Identities=4% Similarity=-0.145 Sum_probs=49.4
Q ss_pred ccccchhhcHHHHHHHHhcCCCCceEEEEEec-chhhHHHHHhcCCCccccCCCCccccCCceeeccCCCcceEeCCCcc
Q 037018 19 CSSKTVKVKVKAVLVWLFMLDSMWLQFLTAVA-YKTAFVADIYNNNVDLSAMNPKLRVPKRFINKAFPVAFPVDVNCACN 97 (663)
Q Consensus 19 ~~~~G~~~~~~~i~~~L~~~~~~~~~vi~i~G-GKTtla~~v~~~~~~~~~~~~~~~~~~~F~~~~~~~~~~v~vs~~~~ 97 (663)
..++|.++.++.+...+.... .+-++|-.| ||||+|+.+.+.. . ..+|+...| ..-+ .-.
T Consensus 31 ~~vigq~~a~~~L~~~~~~~~--~~l~~G~~G~GKttla~~l~~~l----------~-~~~~~~~~~-----~~np-~~~ 91 (637)
T PRK13765 31 DQVIGQEHAVEVIKKAAKQRR--HVMMIGSPGTGKSMLAKAMAELL----------P-KEELQDILV-----YPNP-EDP 91 (637)
T ss_pred HHcCChHHHHHHHHHHHHhCC--eEEEECCCCCcHHHHHHHHHHHc----------C-hHhHHHheE-----eeCC-Ccc
Confidence 358898888888887666543 466666666 9999999998833 1 123566667 4332 223
Q ss_pred hhHHHHHHHHHHHhCC
Q 037018 98 AQLNHILDDIIKSVMP 113 (663)
Q Consensus 98 ~~~~~l~~~i~~~l~~ 113 (663)
...+++.+..+++.
T Consensus 92 --~~~~~~~v~~~~G~ 105 (637)
T PRK13765 92 --NNPKIRTVPAGKGK 105 (637)
T ss_pred --hHHHHHHHHHhcCH
Confidence 67788888876664
No 328
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=78.82 E-value=5.8 Score=37.92 Aligned_cols=87 Identities=7% Similarity=-0.023 Sum_probs=47.6
Q ss_pred ceEEEEEec----chhhHHHHHhcCCCccccCCCCccccCCceeeccCCCcceEeCCCcchhHHHHHHHHHHH---hCCC
Q 037018 42 WLQFLTAVA----YKTAFVADIYNNNVDLSAMNPKLRVPKRFINKAFPVAFPVDVNCACNAQLNHILDDIIKS---VMPP 114 (663)
Q Consensus 42 ~~~vi~i~G----GKTtla~~v~~~~~~~~~~~~~~~~~~~F~~~~~~~~~~v~vs~~~~~~~~~l~~~i~~~---l~~~ 114 (663)
.-+++-|+| |||++|.++.. ....+-...+| ++... +. ..++.+..-.. ...+
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~------------~~~~~g~~v~y-----i~~e~-~~--~~rl~~~~~~~~~~~~~~ 70 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAV------------NAARQGKKVVY-----IDTEG-LS--PERFKQIAEDRPERALSN 70 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH------------HHHhCCCeEEE-----EECCC-CC--HHHHHHHHHhChHHHhcC
Confidence 457788888 99999999887 44444567788 77654 55 55554432211 1110
Q ss_pred C---CcchhhhhHhhHHHHHHHHhhcC-CcEEEEEeCCCC
Q 037018 115 S---RVNVIISEDYKLKTIILRDYLTN-KKDFIVLDDVFD 150 (663)
Q Consensus 115 ~---~~~~~~~~~~~l~~~~l~~~L~~-kr~LlVLDdv~~ 150 (663)
- ......+ .... ...+.+.+.. +.=+||+|-+..
T Consensus 71 i~~~~~~~~~~-~~~~-~~~l~~~~~~~~~~lvVIDSis~ 108 (209)
T TIGR02237 71 FIVFEVFDFDE-QGVA-IQKTSKFIDRDSASLVVVDSFTA 108 (209)
T ss_pred EEEEECCCHHH-HHHH-HHHHHHHHhhcCccEEEEeCcHH
Confidence 0 0000111 2233 3444455544 344889999764
No 329
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=78.81 E-value=4.1 Score=39.75 Aligned_cols=50 Identities=18% Similarity=0.323 Sum_probs=31.1
Q ss_pred HHHHHHhhcCCcEEEEEeCCCC--ChhhHHHHHhhCCCC--CCCceEEEEEeCC
Q 037018 129 TIILRDYLTNKKDFIVLDDVFD--DREIWNDLEKFLPDN--QNGSRVLILVTDP 178 (663)
Q Consensus 129 ~~~l~~~L~~kr~LlVLDdv~~--~~~~~~~l~~~~~~~--~~gskIiiT~r~~ 178 (663)
.-.+-+.+-.+.=+++||+.-. |....+.+...+... ..|..||+++.+.
T Consensus 138 rl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~ 191 (232)
T cd03300 138 RVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQ 191 (232)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 3445566666667888999887 666666666555432 2266777775543
No 330
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=78.75 E-value=7.2 Score=41.94 Aligned_cols=20 Identities=25% Similarity=0.200 Sum_probs=15.2
Q ss_pred EEEEEec----chhhHHHHHhcCC
Q 037018 44 QFLTAVA----YKTAFVADIYNNN 63 (663)
Q Consensus 44 ~vi~i~G----GKTtla~~v~~~~ 63 (663)
..++|.| |||||++.+.+..
T Consensus 164 q~~~I~G~sG~GKStLl~~I~~~~ 187 (440)
T TIGR01026 164 QRIGIFAGSGVGKSTLLGMIARNT 187 (440)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 3456665 9999999999844
No 331
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=78.60 E-value=1.1 Score=42.47 Aligned_cols=17 Identities=18% Similarity=0.235 Sum_probs=14.6
Q ss_pred EEEEec----chhhHHHHHhc
Q 037018 45 FLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 45 vi~i~G----GKTtla~~v~~ 61 (663)
||||.| ||||+|+.+.+
T Consensus 1 iigi~G~~GsGKSTl~~~l~~ 21 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIE 21 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 467777 99999999977
No 332
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=78.52 E-value=5.9 Score=36.62 Aligned_cols=47 Identities=19% Similarity=0.225 Sum_probs=27.6
Q ss_pred HHHHhhcCCcEEEEEeCCCC--ChhhHHHHHhhCCC-CCCCceEEEEEeC
Q 037018 131 ILRDYLTNKKDFIVLDDVFD--DREIWNDLEKFLPD-NQNGSRVLILVTD 177 (663)
Q Consensus 131 ~l~~~L~~kr~LlVLDdv~~--~~~~~~~l~~~~~~-~~~gskIiiT~r~ 177 (663)
.+-+.+-.+.=+++||+... |......+...+.. ...|.-||++|.+
T Consensus 106 ~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~ 155 (173)
T cd03246 106 GLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHR 155 (173)
T ss_pred HHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 34455555666788999887 55555555544432 1236666666554
No 333
>PRK14974 cell division protein FtsY; Provisional
Probab=78.45 E-value=17 Score=37.57 Aligned_cols=20 Identities=20% Similarity=0.044 Sum_probs=16.3
Q ss_pred ceEEEEEec----chhhHHHHHhc
Q 037018 42 WLQFLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 42 ~~~vi~i~G----GKTtla~~v~~ 61 (663)
+..+|+++| ||||.+.++..
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~ 162 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAY 162 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Confidence 357888888 99998888876
No 334
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=78.39 E-value=1.1 Score=38.82 Aligned_cols=26 Identities=12% Similarity=0.038 Sum_probs=16.9
Q ss_pred EEEEEec-chhhHHHHHhcCCCccccCCCCccccCCcee
Q 037018 44 QFLTAVA-YKTAFVADIYNNNVDLSAMNPKLRVPKRFIN 81 (663)
Q Consensus 44 ~vi~i~G-GKTtla~~v~~~~~~~~~~~~~~~~~~~F~~ 81 (663)
-+.|+.| ||||+|+++.. .+...|..
T Consensus 3 Lleg~PG~GKT~la~~lA~------------~~~~~f~R 29 (131)
T PF07726_consen 3 LLEGVPGVGKTTLAKALAR------------SLGLSFKR 29 (131)
T ss_dssp EEES---HHHHHHHHHHHH------------HTT--EEE
T ss_pred eeECCCccHHHHHHHHHHH------------HcCCceeE
Confidence 3456667 99999999999 67777764
No 335
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=78.29 E-value=1.2 Score=41.52 Aligned_cols=17 Identities=24% Similarity=0.292 Sum_probs=14.7
Q ss_pred EEEEec----chhhHHHHHhc
Q 037018 45 FLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 45 vi~i~G----GKTtla~~v~~ 61 (663)
+|+|.| ||||+|+.+..
T Consensus 1 ii~i~G~sgsGKttla~~l~~ 21 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSN 21 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 467777 99999999988
No 336
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=78.29 E-value=1.9 Score=44.50 Aligned_cols=43 Identities=7% Similarity=-0.126 Sum_probs=33.6
Q ss_pred ccccchhhcHHHHHHHHhcCCCCceEEEEEec-chhhHHHHHhc
Q 037018 19 CSSKTVKVKVKAVLVWLFMLDSMWLQFLTAVA-YKTAFVADIYN 61 (663)
Q Consensus 19 ~~~~G~~~~~~~i~~~L~~~~~~~~~vi~i~G-GKTtla~~v~~ 61 (663)
..++|.+..++.+.-.+.....+.+-+.|.-| ||||+|+.+.+
T Consensus 8 ~~i~Gq~~~~~~l~~~~~~~~~~~vLl~G~pG~gKT~lar~la~ 51 (334)
T PRK13407 8 SAIVGQEEMKQAMVLTAIDPGIGGVLVFGDRGTGKSTAVRALAA 51 (334)
T ss_pred HHhCCHHHHHHHHHHHHhccCCCcEEEEcCCCCCHHHHHHHHHH
Confidence 46899999888877655433323688889899 99999999977
No 337
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=78.24 E-value=7.7 Score=42.52 Aligned_cols=92 Identities=12% Similarity=0.126 Sum_probs=58.9
Q ss_pred cccccchhhcHHHHHHHHhcCCC---------CceEEEEEec----chhhHHHHHhcCCCccccCCCCccccCCceeecc
Q 037018 18 SCSSKTVKVKVKAVLVWLFMLDS---------MWLQFLTAVA----YKTAFVADIYNNNVDLSAMNPKLRVPKRFINKAF 84 (663)
Q Consensus 18 ~~~~~G~~~~~~~i~~~L~~~~~---------~~~~vi~i~G----GKTtla~~v~~~~~~~~~~~~~~~~~~~F~~~~~ 84 (663)
-.++=|++....++.+++..... ...+=|=++| |||.||+++.++. .| -|
T Consensus 189 f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel----------~v--Pf----- 251 (802)
T KOG0733|consen 189 FSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGEL----------GV--PF----- 251 (802)
T ss_pred hhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhc----------CC--ce-----
Confidence 34567999999999998865332 2334455677 9999999999955 32 23
Q ss_pred CCCcceEeCCCcchhHHHHHHHHHHHhCCCCCcchhhhhHhhHHHHHHHHhhcCCcEEEEEeCCCC
Q 037018 85 PVAFPVDVNCACNAQLNHILDDIIKSVMPPSRVNVIISEDYKLKTIILRDYLTNKKDFIVLDDVFD 150 (663)
Q Consensus 85 ~~~~~v~vs~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~~l~~~L~~kr~LlVLDdv~~ 150 (663)
..++ .. +|++.+.+.. .+.+ .+.+.+.-..-..++.+||+.-
T Consensus 252 -----~~is--Ap--------eivSGvSGES--------Ekki-RelF~~A~~~aPcivFiDeIDA 293 (802)
T KOG0733|consen 252 -----LSIS--AP--------EIVSGVSGES--------EKKI-RELFDQAKSNAPCIVFIDEIDA 293 (802)
T ss_pred -----Eeec--ch--------hhhcccCccc--------HHHH-HHHHHHHhccCCeEEEeecccc
Confidence 2222 12 5566665543 2334 3334444556889999999875
No 338
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=78.18 E-value=11 Score=35.10 Aligned_cols=33 Identities=15% Similarity=0.220 Sum_probs=20.5
Q ss_pred HHHHHhhcCCcEEEEEeCCCC--ChhhHHHHHhhC
Q 037018 130 IILRDYLTNKKDFIVLDDVFD--DREIWNDLEKFL 162 (663)
Q Consensus 130 ~~l~~~L~~kr~LlVLDdv~~--~~~~~~~l~~~~ 162 (663)
-.+-+.+-.+.=+++||+--. |....+.+...+
T Consensus 80 v~laral~~~p~lllLDEPts~LD~~~~~~l~~~l 114 (177)
T cd03222 80 VAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAI 114 (177)
T ss_pred HHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHH
Confidence 334556666777888999876 555555444444
No 339
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=77.85 E-value=10 Score=40.53 Aligned_cols=21 Identities=19% Similarity=0.037 Sum_probs=16.4
Q ss_pred eEEEEEec----chhhHHHHHhcCC
Q 037018 43 LQFLTAVA----YKTAFVADIYNNN 63 (663)
Q Consensus 43 ~~vi~i~G----GKTtla~~v~~~~ 63 (663)
-++++|+| |||||++.+.+..
T Consensus 155 GQ~igI~G~sGaGKSTLl~~I~g~~ 179 (434)
T PRK07196 155 GQRVGLMAGSGVGKSVLLGMITRYT 179 (434)
T ss_pred ceEEEEECCCCCCccHHHHHHhccc
Confidence 35566666 9999999998844
No 340
>TIGR03324 alt_F1F0_F1_al alternate F1F0 ATPase, F1 subunit alpha. A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 alpha subunit of this apparent second ATP synthase.
Probab=77.68 E-value=11 Score=41.04 Aligned_cols=97 Identities=11% Similarity=0.079 Sum_probs=51.0
Q ss_pred ceEEEEEec-chhhHH-HHHhcCCCccccCCCCccccCCcee-eccCCCcceEeCCCcchhHHHHHHHHHHHhCC-----
Q 037018 42 WLQFLTAVA-YKTAFV-ADIYNNNVDLSAMNPKLRVPKRFIN-KAFPVAFPVDVNCACNAQLNHILDDIIKSVMP----- 113 (663)
Q Consensus 42 ~~~vi~i~G-GKTtla-~~v~~~~~~~~~~~~~~~~~~~F~~-~~~~~~~~v~vs~~~~~~~~~l~~~i~~~l~~----- 113 (663)
+..++|=.| |||||| ..|.|.. . -+. +++ +-+.+... .+.++.+++...=..
T Consensus 164 R~~Ifg~~g~GKT~Lal~~I~~q~------------~--~dv~~V~-----~~IGeR~r-ev~e~i~~l~~~~~l~~tvv 223 (497)
T TIGR03324 164 RELILGDRQTGKTAIAIDTILNQK------------G--RNVLCIY-----CAIGQRAS-AVAKVVANLREHGAMDYTIV 223 (497)
T ss_pred EEEeecCCCCCHHHHHHHHHHHhc------------C--CCcEEEE-----EEeccCcH-HHHHHHHHhhhcCCcceeEE
Confidence 444444344 999996 6888833 2 343 566 66766543 155566666554211
Q ss_pred ----CCCcchhhhhHhhHHHHHHHHhh--cCCcEEEEEeCCCCChhhHHHHH
Q 037018 114 ----PSRVNVIISEDYKLKTIILRDYL--TNKKDFIVLDDVFDDREIWNDLE 159 (663)
Q Consensus 114 ----~~~~~~~~~~~~~l~~~~l~~~L--~~kr~LlVLDdv~~~~~~~~~l~ 159 (663)
.++........-.. ...+-+++ ++|.+|+|+||+..-...+.++.
T Consensus 224 V~atsd~p~~~r~~ap~~-a~aiAEyfrd~G~~VLlv~DdlTr~A~A~REis 274 (497)
T TIGR03324 224 VVTEGNDPPGLQYIAPYA-ATSIGEHFMEQGRDVLIVYDDLTQHARAYRELS 274 (497)
T ss_pred EEeCCCCCHHHHHHHHHH-HHHHHHHHHhCCCCEEEEEcChhHHHHHHHHHH
Confidence 11111111111111 22233444 57999999999976344555554
No 341
>PRK06217 hypothetical protein; Validated
Probab=77.58 E-value=1.1 Score=41.95 Aligned_cols=22 Identities=14% Similarity=0.028 Sum_probs=16.5
Q ss_pred ceEEEEEec-chhhHHHHHhcCC
Q 037018 42 WLQFLTAVA-YKTAFVADIYNNN 63 (663)
Q Consensus 42 ~~~vi~i~G-GKTtla~~v~~~~ 63 (663)
++-++|..| ||||+|+++....
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l 25 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERL 25 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 345555566 9999999999844
No 342
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=77.43 E-value=6.2 Score=40.53 Aligned_cols=39 Identities=21% Similarity=0.224 Sum_probs=28.6
Q ss_pred HHHHHHhhcCCcEEEEEeCCCCChhhHHHHHhhCCCCCCCc
Q 037018 129 TIILRDYLTNKKDFIVLDDVFDDREIWNDLEKFLPDNQNGS 169 (663)
Q Consensus 129 ~~~l~~~L~~kr~LlVLDdv~~~~~~~~~l~~~~~~~~~gs 169 (663)
...++..|+-..=-||+..|.+ .+.|+. ..+...++.|+
T Consensus 209 ~~ll~~aLR~~PD~IivGEiR~-~Ea~~~-l~A~~tGh~G~ 247 (319)
T PRK13894 209 TALLKTTLRMRPDRILVGEVRG-PEALDL-LMAWNTGHEGG 247 (319)
T ss_pred HHHHHHHhcCCCCEEEEeccCC-HHHHHH-HHHHHcCCCce
Confidence 4557788888888899999999 877764 44555555554
No 343
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=77.27 E-value=5.8 Score=45.74 Aligned_cols=45 Identities=16% Similarity=-0.014 Sum_probs=32.7
Q ss_pred ccccchhhcHHHHHHHHhcCCC--CceEEEEEec-chhhHHHHHhcCC
Q 037018 19 CSSKTVKVKVKAVLVWLFMLDS--MWLQFLTAVA-YKTAFVADIYNNN 63 (663)
Q Consensus 19 ~~~~G~~~~~~~i~~~L~~~~~--~~~~vi~i~G-GKTtla~~v~~~~ 63 (663)
..++|....++++.+.+..-.. .++-+.|=.| |||++|+.|++..
T Consensus 376 ~~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s 423 (686)
T PRK15429 376 GEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLS 423 (686)
T ss_pred cceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhc
Confidence 3689998888888766653222 2566666666 9999999999844
No 344
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=77.06 E-value=9.9 Score=41.11 Aligned_cols=48 Identities=25% Similarity=0.263 Sum_probs=31.0
Q ss_pred HHHHhhcCCcEEEEEeCCCC--ChhhHHHHHhhCCCCCCCceEEEEEeCCC
Q 037018 131 ILRDYLTNKKDFIVLDDVFD--DREIWNDLEKFLPDNQNGSRVLILVTDPF 179 (663)
Q Consensus 131 ~l~~~L~~kr~LlVLDdv~~--~~~~~~~l~~~~~~~~~gskIiiT~r~~~ 179 (663)
.+-+.|-.|..|+.||+--+ |.+.-..+...+....++ .++|+++++.
T Consensus 231 aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~~-~lVi~sh~QD 280 (614)
T KOG0927|consen 231 ALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDRI-ILVIVSHSQD 280 (614)
T ss_pred HHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccCc-eEEEEecchh
Confidence 35566677889999999887 555444455555444333 6777766554
No 345
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=76.84 E-value=1.5 Score=38.95 Aligned_cols=22 Identities=9% Similarity=0.172 Sum_probs=17.0
Q ss_pred ceEEEEEec-chhhHHHHHhcCC
Q 037018 42 WLQFLTAVA-YKTAFVADIYNNN 63 (663)
Q Consensus 42 ~~~vi~i~G-GKTtla~~v~~~~ 63 (663)
++=+||=+| |||||++++-..+
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~ 25 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEE 25 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCC
Confidence 344566666 9999999999865
No 346
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=76.77 E-value=27 Score=39.04 Aligned_cols=42 Identities=10% Similarity=-0.175 Sum_probs=31.5
Q ss_pred cccchhhcHHHHHHHHhcCCCCc-eEEEEEec-chhhHHHHHhc
Q 037018 20 SSKTVKVKVKAVLVWLFMLDSMW-LQFLTAVA-YKTAFVADIYN 61 (663)
Q Consensus 20 ~~~G~~~~~~~i~~~L~~~~~~~-~~vi~i~G-GKTtla~~v~~ 61 (663)
.++|.+.-++.+.+++....... +-..|-.| ||||+|+.+.+
T Consensus 17 ~viGq~~v~~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lAk 60 (559)
T PRK05563 17 DVVGQEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAK 60 (559)
T ss_pred hccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 69999999999999998765322 23344444 99999998876
No 347
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=76.74 E-value=9.5 Score=35.17 Aligned_cols=50 Identities=12% Similarity=0.104 Sum_probs=32.5
Q ss_pred HHHHHHhhcCCcE-EEEEeCCCC----ChhhHHHHHhhCCCCCCCceEEEEEeCC
Q 037018 129 TIILRDYLTNKKD-FIVLDDVFD----DREIWNDLEKFLPDNQNGSRVLILVTDP 178 (663)
Q Consensus 129 ~~~l~~~L~~kr~-LlVLDdv~~----~~~~~~~l~~~~~~~~~gskIiiT~r~~ 178 (663)
-...++.+...+| |||||.+.. .--..+.+...+....++--||+|-|+.
T Consensus 86 ~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~ 140 (173)
T TIGR00708 86 WQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGC 140 (173)
T ss_pred HHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCC
Confidence 4556666666555 999999875 1223345555555455567899998765
No 348
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=76.73 E-value=6.4 Score=39.30 Aligned_cols=48 Identities=10% Similarity=0.246 Sum_probs=27.2
Q ss_pred HHHHHhhcCCcEEEEEeCCCC--ChhhHHHHHhhCCC-CCCCceEEEEEeC
Q 037018 130 IILRDYLTNKKDFIVLDDVFD--DREIWNDLEKFLPD-NQNGSRVLILVTD 177 (663)
Q Consensus 130 ~~l~~~L~~kr~LlVLDdv~~--~~~~~~~l~~~~~~-~~~gskIiiT~r~ 177 (663)
-.+-..+-.+.=+++||+.-+ |...-+.+...+.. ...|.-||++|.+
T Consensus 152 v~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~ 202 (264)
T PRK13546 152 LGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHN 202 (264)
T ss_pred HHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCC
Confidence 345566666777889999887 54433333333321 2236666666554
No 349
>PRK10646 ADP-binding protein; Provisional
Probab=76.65 E-value=3.7 Score=36.97 Aligned_cols=37 Identities=8% Similarity=-0.123 Sum_probs=23.5
Q ss_pred hcHHHHHHHHhcCCCCceEEEEEec----chhhHHHHHhcCC
Q 037018 26 VKVKAVLVWLFMLDSMWLQFLTAVA----YKTAFVADIYNNN 63 (663)
Q Consensus 26 ~~~~~i~~~L~~~~~~~~~vi~i~G----GKTtla~~v~~~~ 63 (663)
++.+++-+.|...-. .-.||...| ||||++|.+.+..
T Consensus 12 ~~t~~l~~~la~~l~-~g~vi~L~GdLGaGKTtf~rgl~~~L 52 (153)
T PRK10646 12 QATLDLGARVAKACD-GATVIYLYGDLGAGKTTFSRGFLQAL 52 (153)
T ss_pred HHHHHHHHHHHHhCC-CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 334445555543221 234788888 9999999998843
No 350
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=76.58 E-value=28 Score=34.11 Aligned_cols=96 Identities=14% Similarity=0.129 Sum_probs=53.9
Q ss_pred ceEEEEEec-chhhHHHHHhcCCCccccCCCCccccCCceeeccCCCcceEe-CCCcchhHHHHHHHHHHHhCCCCCcch
Q 037018 42 WLQFLTAVA-YKTAFVADIYNNNVDLSAMNPKLRVPKRFINKAFPVAFPVDV-NCACNAQLNHILDDIIKSVMPPSRVNV 119 (663)
Q Consensus 42 ~~~vi~i~G-GKTtla~~v~~~~~~~~~~~~~~~~~~~F~~~~~~~~~~v~v-s~~~~~~~~~l~~~i~~~l~~~~~~~~ 119 (663)
-+-|.|-+| |||++.|++-... . . +.++- +.+ .+... ...+.+.|..++..+.. +.
T Consensus 53 ~~~vtGevGsGKTv~~Ral~~s~----------~-~---d~~~~-----v~i~~~~~s--~~~~~~ai~~~l~~~p~-~~ 110 (269)
T COG3267 53 ILAVTGEVGSGKTVLRRALLASL----------N-E---DQVAV-----VVIDKPTLS--DATLLEAIVADLESQPK-VN 110 (269)
T ss_pred eEEEEecCCCchhHHHHHHHHhc----------C-C---CceEE-----EEecCcchh--HHHHHHHHHHHhccCcc-ch
Confidence 456666677 9999999655422 1 0 11111 122 23344 78888888888887322 11
Q ss_pred hhhhHhhHHHHHHHHhh-cCCc-EEEEEeCCCC-ChhhHHHHHh
Q 037018 120 IISEDYKLKTIILRDYL-TNKK-DFIVLDDVFD-DREIWNDLEK 160 (663)
Q Consensus 120 ~~~~~~~l~~~~l~~~L-~~kr-~LlVLDdv~~-~~~~~~~l~~ 160 (663)
+.....+. ...+.... ++|| +.++.||... .....+.++-
T Consensus 111 ~~~~~e~~-~~~L~al~~~g~r~v~l~vdEah~L~~~~le~Lrl 153 (269)
T COG3267 111 VNAVLEQI-DRELAALVKKGKRPVVLMVDEAHDLNDSALEALRL 153 (269)
T ss_pred hHHHHHHH-HHHHHHHHHhCCCCeEEeehhHhhhChhHHHHHHH
Confidence 22212333 34444444 4688 8999999876 4445555543
No 351
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=76.48 E-value=10 Score=35.10 Aligned_cols=37 Identities=22% Similarity=0.376 Sum_probs=23.1
Q ss_pred cE-EEEEeCCCC-C----hhhHHHHHhhCCCCCCCceEEEEEeCCC
Q 037018 140 KD-FIVLDDVFD-D----REIWNDLEKFLPDNQNGSRVLILVTDPF 179 (663)
Q Consensus 140 r~-LlVLDdv~~-~----~~~~~~l~~~~~~~~~gskIiiT~r~~~ 179 (663)
++ ++|+|++.. . ...|..+.... .++.++++.|.+..
T Consensus 129 ~~~~iIiDE~h~~~~~~~~~~~~~~~~~~---~~~~~~v~~saT~~ 171 (201)
T smart00487 129 NVDLVILDEAHRLLDGGFGDQLEKLLKLL---PKNVQLLLLSATPP 171 (201)
T ss_pred HCCEEEEECHHHHhcCCcHHHHHHHHHhC---CccceEEEEecCCc
Confidence 44 889999876 2 23444444444 45677777777664
No 352
>PRK08472 fliI flagellum-specific ATP synthase; Validated
Probab=76.38 E-value=11 Score=40.36 Aligned_cols=23 Identities=9% Similarity=0.079 Sum_probs=16.7
Q ss_pred cCCcEEEEEeCCCCChhhHHHHH
Q 037018 137 TNKKDFIVLDDVFDDREIWNDLE 159 (663)
Q Consensus 137 ~~kr~LlVLDdv~~~~~~~~~l~ 159 (663)
++|.+|+++||+-.-...+.++.
T Consensus 244 ~G~~Vll~~DslTr~A~A~REi~ 266 (434)
T PRK08472 244 QGLDVLFIMDSVTRFAMAQREIG 266 (434)
T ss_pred cCCCEEEecccchHHHHHHHHHH
Confidence 48999999999976344455554
No 353
>COG1157 FliI Flagellar biosynthesis/type III secretory pathway ATPase [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=76.24 E-value=7.5 Score=40.64 Aligned_cols=105 Identities=9% Similarity=0.098 Sum_probs=63.1
Q ss_pred hhhcHHHHHHHHhcCCCCceEEEEEec-chhhHHHHHhcCCCccccCCCCccccCCceeeccCCCcceEeC-CCcchhHH
Q 037018 24 VKVKVKAVLVWLFMLDSMWLQFLTAVA-YKTAFVADIYNNNVDLSAMNPKLRVPKRFINKAFPVAFPVDVN-CACNAQLN 101 (663)
Q Consensus 24 ~~~~~~~i~~~L~~~~~~~~~vi~i~G-GKTtla~~v~~~~~~~~~~~~~~~~~~~F~~~~~~~~~~v~vs-~~~~~~~~ 101 (663)
++.-++.|-.+|.-...+++.+-+=.| ||+||.-.+.+.. .+|..+- .=+. +-.- ++
T Consensus 147 l~tGVRaIDgllT~G~GQRiGIFAgsGVGKStLLgMiar~t--------------~aDv~Vi-----aLIGERGRE--Vr 205 (441)
T COG1157 147 LDTGVRAIDGLLTCGKGQRIGIFAGSGVGKSTLLGMIARNT--------------EADVNVI-----ALIGERGRE--VR 205 (441)
T ss_pred ccccceeeecccccccCceeEEEecCCCcHHHHHHHHhccc--------------cCCEEEE-----EEeeccchh--HH
Confidence 344466666677666655555555555 9999999999944 4564433 2222 2233 77
Q ss_pred HHHHHHHHHhCCCCC--------cchhhhh-HhhHHHHHHHHhhc--CCcEEEEEeCCCC
Q 037018 102 HILDDIIKSVMPPSR--------VNVIISE-DYKLKTIILRDYLT--NKKDFIVLDDVFD 150 (663)
Q Consensus 102 ~l~~~i~~~l~~~~~--------~~~~~~~-~~~l~~~~l~~~L~--~kr~LlVLDdv~~ 150 (663)
++.++.+..-+.+.+ .+.+.-. .... +..+-++.+ +|++|+++|-|-.
T Consensus 206 EFIE~~Lg~egl~rsViVvATSD~s~l~R~~aa~~-At~IAEyFRDqG~~VLL~mDSlTR 264 (441)
T COG1157 206 EFIEKDLGEEGLKRSVVVVATSDESALMRLKAAFT-ATTIAEYFRDQGKRVLLIMDSLTR 264 (441)
T ss_pred HHHHHhcchhhccceEEEEECCCCCHHHHHHHHHH-HHHHHHHHHhCCCeEEEEeecHHH
Confidence 777777766643221 1112222 3334 455667775 6999999999864
No 354
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=76.22 E-value=2 Score=44.49 Aligned_cols=47 Identities=4% Similarity=-0.134 Sum_probs=33.5
Q ss_pred ccccccchhhcHHHHHHHHhcCCCCceEEEEEec-chhhHHHHHhcCC
Q 037018 17 TSCSSKTVKVKVKAVLVWLFMLDSMWLQFLTAVA-YKTAFVADIYNNN 63 (663)
Q Consensus 17 ~~~~~~G~~~~~~~i~~~L~~~~~~~~~vi~i~G-GKTtla~~v~~~~ 63 (663)
+-..+||-++.+..++..+....-..+-+.|=.| ||||+|+.+++-.
T Consensus 15 pf~~ivGq~~~k~al~~~~~~p~~~~vli~G~~GtGKs~~ar~~~~~l 62 (350)
T CHL00081 15 PFTAIVGQEEMKLALILNVIDPKIGGVMIMGDRGTGKSTTIRALVDLL 62 (350)
T ss_pred CHHHHhChHHHHHHHHHhccCCCCCeEEEEcCCCCCHHHHHHHHHHHH
Confidence 3446899998888888877765443444444444 9999999997743
No 355
>CHL00176 ftsH cell division protein; Validated
Probab=75.78 E-value=13 Score=42.04 Aligned_cols=44 Identities=11% Similarity=-0.047 Sum_probs=28.2
Q ss_pred ccccchhhcHHHHHHHHhcCCC---------CceEEEEEec----chhhHHHHHhcC
Q 037018 19 CSSKTVKVKVKAVLVWLFMLDS---------MWLQFLTAVA----YKTAFVADIYNN 62 (663)
Q Consensus 19 ~~~~G~~~~~~~i~~~L~~~~~---------~~~~vi~i~G----GKTtla~~v~~~ 62 (663)
..+.|.++.++++.+.+.--.. ...+-|-++| |||++|+++.+.
T Consensus 183 ~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e 239 (638)
T CHL00176 183 RDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGE 239 (638)
T ss_pred HhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 3578887777776665422111 1123355666 999999999983
No 356
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=75.73 E-value=7 Score=39.96 Aligned_cols=96 Identities=16% Similarity=-0.002 Sum_probs=50.8
Q ss_pred HHHHHHHhcCCCCceEEEEEec----chhhHHHHHhcCCCccccCCCCccccCCceeeccCCCcceEeCCCcchhHHHHH
Q 037018 29 KAVLVWLFMLDSMWLQFLTAVA----YKTAFVADIYNNNVDLSAMNPKLRVPKRFINKAFPVAFPVDVNCACNAQLNHIL 104 (663)
Q Consensus 29 ~~i~~~L~~~~~~~~~vi~i~G----GKTtla~~v~~~~~~~~~~~~~~~~~~~F~~~~~~~~~~v~vs~~~~~~~~~l~ 104 (663)
..+=..|.....+.-+++-|+| ||||||-.+.. +..+.-..++| +...+.++ ..
T Consensus 39 ~~LD~aLg~GG~p~G~ivEi~G~~ssGKttLaL~~ia------------~~q~~g~~~a~-----ID~e~~ld--~~--- 96 (322)
T PF00154_consen 39 PALDYALGIGGLPRGRIVEIYGPESSGKTTLALHAIA------------EAQKQGGICAF-----IDAEHALD--PE--- 96 (322)
T ss_dssp HHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHH------------HHHHTT-EEEE-----EESSS-----HH---
T ss_pred cccchhhccCccccCceEEEeCCCCCchhhhHHHHHH------------hhhcccceeEE-----ecCcccch--hh---
Confidence 3344444434334567889999 99999999988 55555567889 88887777 43
Q ss_pred HHHHHHhCCCCCcc---hhhhhHhhHHHHHHHHhhc-CCcEEEEEeCCCC
Q 037018 105 DDIIKSVMPPSRVN---VIISEDYKLKTIILRDYLT-NKKDFIVLDDVFD 150 (663)
Q Consensus 105 ~~i~~~l~~~~~~~---~~~~~~~~l~~~~l~~~L~-~kr~LlVLDdv~~ 150 (663)
.+++++.+.+.- +.+. .++. ...+...++ +.--++|+|-|-.
T Consensus 97 --~a~~lGvdl~rllv~~P~~-~E~a-l~~~e~lirsg~~~lVVvDSv~a 142 (322)
T PF00154_consen 97 --YAESLGVDLDRLLVVQPDT-GEQA-LWIAEQLIRSGAVDLVVVDSVAA 142 (322)
T ss_dssp --HHHHTT--GGGEEEEE-SS-HHHH-HHHHHHHHHTTSESEEEEE-CTT
T ss_pred --HHHhcCccccceEEecCCc-HHHH-HHHHHHHhhcccccEEEEecCcc
Confidence 233444321110 0111 1112 233334343 3445899999876
No 357
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=75.69 E-value=11 Score=43.74 Aligned_cols=43 Identities=9% Similarity=-0.134 Sum_probs=30.9
Q ss_pred ccccchhhcHHHHHHHHhcC----------CCCceEEEEEec----chhhHHHHHhc
Q 037018 19 CSSKTVKVKVKAVLVWLFML----------DSMWLQFLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 19 ~~~~G~~~~~~~i~~~L~~~----------~~~~~~vi~i~G----GKTtla~~v~~ 61 (663)
..+.|++..++++.+++... .-...+-|-++| ||||+|+++.+
T Consensus 178 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~ 234 (733)
T TIGR01243 178 EDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVAN 234 (733)
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHH
Confidence 35789999999998877421 001234466777 99999999999
No 358
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=75.54 E-value=5.1 Score=41.01 Aligned_cols=96 Identities=15% Similarity=0.003 Sum_probs=52.1
Q ss_pred HHHHHHHhcCCCCceEEEEEec----chhhHHHHHhcCCCccccCCCCccccCCceeeccCCCcceEeCCCcchhHHHHH
Q 037018 29 KAVLVWLFMLDSMWLQFLTAVA----YKTAFVADIYNNNVDLSAMNPKLRVPKRFINKAFPVAFPVDVNCACNAQLNHIL 104 (663)
Q Consensus 29 ~~i~~~L~~~~~~~~~vi~i~G----GKTtla~~v~~~~~~~~~~~~~~~~~~~F~~~~~~~~~~v~vs~~~~~~~~~l~ 104 (663)
..+=.+|....-++-+++-|+| ||||||.++.. .....-..++| +...+.++ ..
T Consensus 41 ~~LD~~Lg~GGlp~G~iteI~G~~GsGKTtLaL~~~~------------~~~~~g~~v~y-----Id~E~~~~--~~--- 98 (321)
T TIGR02012 41 LSLDLALGVGGLPRGRIIEIYGPESSGKTTLALHAIA------------EAQKAGGTAAF-----IDAEHALD--PV--- 98 (321)
T ss_pred HHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHH------------HHHHcCCcEEE-----EcccchhH--HH---
Confidence 3344445423334667888999 99999998777 33344455667 76666555 32
Q ss_pred HHHHHHhCCCCCc---chhhhhHhhHHHHHHHHhhc-CCcEEEEEeCCCC
Q 037018 105 DDIIKSVMPPSRV---NVIISEDYKLKTIILRDYLT-NKKDFIVLDDVFD 150 (663)
Q Consensus 105 ~~i~~~l~~~~~~---~~~~~~~~~l~~~~l~~~L~-~kr~LlVLDdv~~ 150 (663)
.+++++.+.+. .+.+. .++. ...+...++ +.--+||+|-|-.
T Consensus 99 --~a~~lGvd~~~l~v~~p~~-~eq~-l~~~~~li~~~~~~lIVIDSv~a 144 (321)
T TIGR02012 99 --YARKLGVDIDNLLVSQPDT-GEQA-LEIAETLVRSGAVDIIVVDSVAA 144 (321)
T ss_pred --HHHHcCCCHHHeEEecCCC-HHHH-HHHHHHHhhccCCcEEEEcchhh
Confidence 23444332100 00111 2223 334444443 3556899999874
No 359
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=75.54 E-value=9.5 Score=42.46 Aligned_cols=46 Identities=20% Similarity=0.161 Sum_probs=26.7
Q ss_pred HHHHhhcCCcEEEEEeCCCC--ChhhHHHHHhhCCCCCC-CceEEEEEe
Q 037018 131 ILRDYLTNKKDFIVLDDVFD--DREIWNDLEKFLPDNQN-GSRVLILVT 176 (663)
Q Consensus 131 ~l~~~L~~kr~LlVLDdv~~--~~~~~~~l~~~~~~~~~-gskIiiT~r 176 (663)
.+-+.+-+++=++|||+.-+ |.+.=..+...+....+ ...|+||+|
T Consensus 480 aiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~~~~TvIiItHr 528 (529)
T TIGR02868 480 ALARALLADAPILLLDEPTEHLDAGTESELLEDLLAALSGKTVVVITHH 528 (529)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEecC
Confidence 34455555556778999887 55554555554443322 456666665
No 360
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=75.44 E-value=8.1 Score=41.29 Aligned_cols=20 Identities=25% Similarity=0.193 Sum_probs=15.8
Q ss_pred EEEEEec----chhhHHHHHhcCC
Q 037018 44 QFLTAVA----YKTAFVADIYNNN 63 (663)
Q Consensus 44 ~vi~i~G----GKTtla~~v~~~~ 63 (663)
+.++|+| |||||++.+....
T Consensus 157 qri~I~G~sG~GKTtLl~~Ia~~~ 180 (432)
T PRK06793 157 QKIGIFAGSGVGKSTLLGMIAKNA 180 (432)
T ss_pred cEEEEECCCCCChHHHHHHHhccC
Confidence 4556666 9999999999855
No 361
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=75.30 E-value=5.7 Score=41.09 Aligned_cols=43 Identities=12% Similarity=-0.110 Sum_probs=28.5
Q ss_pred ccchhhcHHHHHHHHhcCCC--CceEEEEEec-chhhHHHHHhcCC
Q 037018 21 SKTVKVKVKAVLVWLFMLDS--MWLQFLTAVA-YKTAFVADIYNNN 63 (663)
Q Consensus 21 ~~G~~~~~~~i~~~L~~~~~--~~~~vi~i~G-GKTtla~~v~~~~ 63 (663)
++|....++++.+.+..-.. ..+-+.|=.| ||+++|+.|++..
T Consensus 1 liG~S~~m~~~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr~iH~~s 46 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYLS 46 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHhc
Confidence 35666666666666654322 2455555566 9999999998743
No 362
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=75.30 E-value=2.5 Score=39.69 Aligned_cols=31 Identities=26% Similarity=0.307 Sum_probs=24.0
Q ss_pred HHHHHHhhcCCcEEEEEeCCCCChhhHHHHHh
Q 037018 129 TIILRDYLTNKKDFIVLDDVFDDREIWNDLEK 160 (663)
Q Consensus 129 ~~~l~~~L~~kr~LlVLDdv~~~~~~~~~l~~ 160 (663)
...++..++...=.+|++.+.+ .+.|+.+..
T Consensus 90 ~~~l~~~lR~~pd~i~igEir~-~ea~~~~~a 120 (186)
T cd01130 90 ADLLRSALRMRPDRIIVGEVRG-GEALDLLQA 120 (186)
T ss_pred HHHHHHHhccCCCEEEEEccCc-HHHHHHHHH
Confidence 4556677888888999999999 777775554
No 363
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=75.15 E-value=1.7 Score=39.85 Aligned_cols=16 Identities=13% Similarity=0.208 Sum_probs=13.4
Q ss_pred EEEec----chhhHHHHHhc
Q 037018 46 LTAVA----YKTAFVADIYN 61 (663)
Q Consensus 46 i~i~G----GKTtla~~v~~ 61 (663)
|+|.| |||||++++..
T Consensus 2 I~i~G~~stGKTTL~~~L~~ 21 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAA 21 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 66777 99999999998
No 364
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=74.96 E-value=13 Score=38.21 Aligned_cols=43 Identities=19% Similarity=0.043 Sum_probs=32.7
Q ss_pred cccchhhcHHHHHHHHhcCC-CCc-eEEEEEec-chhhHHHHHhcC
Q 037018 20 SSKTVKVKVKAVLVWLFMLD-SMW-LQFLTAVA-YKTAFVADIYNN 62 (663)
Q Consensus 20 ~~~G~~~~~~~i~~~L~~~~-~~~-~~vi~i~G-GKTtla~~v~~~ 62 (663)
.++|-+..+.++..+..... .+. +-+.|-.| ||||+|.++.+.
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~ 47 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKE 47 (325)
T ss_pred CcccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHH
Confidence 36788888899999988544 234 66666667 999999998884
No 365
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=74.93 E-value=9.8 Score=35.05 Aligned_cols=17 Identities=24% Similarity=0.100 Sum_probs=13.5
Q ss_pred EEEEec----chhhHHHHHhc
Q 037018 45 FLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 45 vi~i~G----GKTtla~~v~~ 61 (663)
++.+.| ||||+++.+..
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~ 22 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLAL 22 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 455555 99999999887
No 366
>PRK09281 F0F1 ATP synthase subunit alpha; Validated
Probab=74.90 E-value=9.3 Score=41.73 Aligned_cols=23 Identities=26% Similarity=0.394 Sum_probs=17.5
Q ss_pred CCcEEEEEeCCCCChhhHHHHHh
Q 037018 138 NKKDFIVLDDVFDDREIWNDLEK 160 (663)
Q Consensus 138 ~kr~LlVLDdv~~~~~~~~~l~~ 160 (663)
+|.+|+|+||+-.-.+.+.++.-
T Consensus 253 G~~VLli~DdlTr~A~A~REisl 275 (502)
T PRK09281 253 GKDALIVYDDLSKQAVAYRQLSL 275 (502)
T ss_pred CCCEEEEecCchHHHHHHHHHHH
Confidence 89999999999864555666554
No 367
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=74.51 E-value=9.7 Score=39.10 Aligned_cols=65 Identities=12% Similarity=-0.020 Sum_probs=38.2
Q ss_pred HHHHHHHHhcCCCCceEEEEEec----chhhHHHHHhcCCCccccCCCCccccC----CceeeccCCCcceEeCCCcchh
Q 037018 28 VKAVLVWLFMLDSMWLQFLTAVA----YKTAFVADIYNNNVDLSAMNPKLRVPK----RFINKAFPVAFPVDVNCACNAQ 99 (663)
Q Consensus 28 ~~~i~~~L~~~~~~~~~vi~i~G----GKTtla~~v~~~~~~~~~~~~~~~~~~----~F~~~~~~~~~~v~vs~~~~~~ 99 (663)
.+.+-.+|... -+.-.++.|+| ||||||..++... .... .-...+| ++....+.
T Consensus 82 ~~~lD~ll~gG-i~~g~i~~i~G~~g~GKT~l~~~~~~~~----------~~~~~~Gg~~~~vvy-----IdtE~~f~-- 143 (316)
T TIGR02239 82 SKELDKLLGGG-IETGSITEIFGEFRTGKTQLCHTLAVTC----------QLPIDQGGGEGKALY-----IDTEGTFR-- 143 (316)
T ss_pred CHHHHHHhcCC-CCCCeEEEEECCCCCCcCHHHHHHHHHH----------hhhhhcCCCCceEEE-----EECCCCCC--
Confidence 34444545432 23578888888 9999999887532 1111 1135678 77777677
Q ss_pred HHHHHHHHHHHh
Q 037018 100 LNHILDDIIKSV 111 (663)
Q Consensus 100 ~~~l~~~i~~~l 111 (663)
..++.+ +++.+
T Consensus 144 ~~Rl~~-ia~~~ 154 (316)
T TIGR02239 144 PERLLA-IAERY 154 (316)
T ss_pred HHHHHH-HHHHc
Confidence 665433 44443
No 368
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase.
Probab=74.20 E-value=15 Score=39.40 Aligned_cols=20 Identities=20% Similarity=0.130 Sum_probs=15.3
Q ss_pred EEEEEec----chhhHHHHHhcCC
Q 037018 44 QFLTAVA----YKTAFVADIYNNN 63 (663)
Q Consensus 44 ~vi~i~G----GKTtla~~v~~~~ 63 (663)
..++|.| |||||++.+.+..
T Consensus 146 q~~~I~G~sG~GKStLl~~I~~~~ 169 (422)
T TIGR02546 146 QRIGIFAGAGVGKSTLLGMIARGA 169 (422)
T ss_pred CEEEEECCCCCChHHHHHHHhCCC
Confidence 3455555 9999999999944
No 369
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=74.17 E-value=5.9 Score=44.13 Aligned_cols=47 Identities=6% Similarity=-0.132 Sum_probs=33.7
Q ss_pred ccccccchhhcHHHHHHHHhcCCC--CceEEEEEec-chhhHHHHHhcCC
Q 037018 17 TSCSSKTVKVKVKAVLVWLFMLDS--MWLQFLTAVA-YKTAFVADIYNNN 63 (663)
Q Consensus 17 ~~~~~~G~~~~~~~i~~~L~~~~~--~~~~vi~i~G-GKTtla~~v~~~~ 63 (663)
....++|....++++.+.+..-.. ..+-+.|=.| |||++|+.|++..
T Consensus 194 ~~~~liG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~s 243 (534)
T TIGR01817 194 KEDGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYLS 243 (534)
T ss_pred ccCceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHhC
Confidence 344789999999998888765332 2344444445 9999999999844
No 370
>CHL00059 atpA ATP synthase CF1 alpha subunit
Probab=73.92 E-value=13 Score=40.22 Aligned_cols=97 Identities=10% Similarity=0.100 Sum_probs=50.5
Q ss_pred CceEEEEEec-chhhH-HHHHhcCCCccccCCCCccccCCcee-eccCCCcceEeCCCcchhHHHHHHHHHHHhCC----
Q 037018 41 MWLQFLTAVA-YKTAF-VADIYNNNVDLSAMNPKLRVPKRFIN-KAFPVAFPVDVNCACNAQLNHILDDIIKSVMP---- 113 (663)
Q Consensus 41 ~~~~vi~i~G-GKTtl-a~~v~~~~~~~~~~~~~~~~~~~F~~-~~~~~~~~v~vs~~~~~~~~~l~~~i~~~l~~---- 113 (663)
++..++|=.| ||||| +..|.|.. .-|. +++ +-+.+... .+.++.+++...=..
T Consensus 142 QR~~I~g~~g~GKt~Lal~~I~~q~--------------~~dv~cV~-----~~IGer~r-ev~e~~~~l~~~~~l~~tv 201 (485)
T CHL00059 142 QRELIIGDRQTGKTAVATDTILNQK--------------GQNVICVY-----VAIGQKAS-SVAQVVTTLQERGAMEYTI 201 (485)
T ss_pred CEEEeecCCCCCHHHHHHHHHHhcc--------------cCCeEEEE-----EEecCCch-HHHHHHHHhhcccchhceE
Confidence 3444444444 99999 56677722 2243 366 66765544 155566665543211
Q ss_pred -----CCCcchhhhh----HhhHHHHHHHHhhcCCcEEEEEeCCCCChhhHHHHHh
Q 037018 114 -----PSRVNVIISE----DYKLKTIILRDYLTNKKDFIVLDDVFDDREIWNDLEK 160 (663)
Q Consensus 114 -----~~~~~~~~~~----~~~l~~~~l~~~L~~kr~LlVLDdv~~~~~~~~~l~~ 160 (663)
.++....... .-.. ++.++. ++|.+|+|+||+..-...+.++.-
T Consensus 202 vV~atad~~~~~r~~ap~~a~ai-AEyfr~--~G~~VLlv~DdlTr~A~A~REisl 254 (485)
T CHL00059 202 VVAETADSPATLQYLAPYTGAAL-AEYFMY--RGRHTLIIYDDLSKQAQAYRQMSL 254 (485)
T ss_pred EEEeCCCCCHHHHHHHHHHHhhH-HHHHHH--cCCCEEEEEcChhHHHHHHHHHHH
Confidence 1111111111 1122 333333 579999999999764555555553
No 371
>PRK00625 shikimate kinase; Provisional
Probab=73.89 E-value=1.8 Score=40.13 Aligned_cols=20 Identities=15% Similarity=0.031 Sum_probs=16.7
Q ss_pred ceEEEEEec-chhhHHHHHhc
Q 037018 42 WLQFLTAVA-YKTAFVADIYN 61 (663)
Q Consensus 42 ~~~vi~i~G-GKTtla~~v~~ 61 (663)
.+-++|+.| ||||+++.+.+
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~ 22 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAK 22 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 356777788 99999999988
No 372
>PRK09354 recA recombinase A; Provisional
Probab=73.75 E-value=6.8 Score=40.54 Aligned_cols=97 Identities=16% Similarity=0.010 Sum_probs=53.9
Q ss_pred HHHHHHHHhcCCCCceEEEEEec----chhhHHHHHhcCCCccccCCCCccccCCceeeccCCCcceEeCCCcchhHHHH
Q 037018 28 VKAVLVWLFMLDSMWLQFLTAVA----YKTAFVADIYNNNVDLSAMNPKLRVPKRFINKAFPVAFPVDVNCACNAQLNHI 103 (663)
Q Consensus 28 ~~~i~~~L~~~~~~~~~vi~i~G----GKTtla~~v~~~~~~~~~~~~~~~~~~~F~~~~~~~~~~v~vs~~~~~~~~~l 103 (663)
...+=.+|....-+.=+++=|+| ||||||-++.- .....-...+| +..-..++ ..
T Consensus 45 i~~LD~~LG~GGip~G~IteI~G~~GsGKTtLal~~~~------------~~~~~G~~~~y-----Id~E~s~~--~~-- 103 (349)
T PRK09354 45 SLALDIALGIGGLPRGRIVEIYGPESSGKTTLALHAIA------------EAQKAGGTAAF-----IDAEHALD--PV-- 103 (349)
T ss_pred cHHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHH------------HHHHcCCcEEE-----ECCccchH--HH--
Confidence 34444555523444567888888 99999999877 33444466778 77766666 42
Q ss_pred HHHHHHHhCCCCCc---chhhhhHhhHHHHHHHHhhc-CCcEEEEEeCCCC
Q 037018 104 LDDIIKSVMPPSRV---NVIISEDYKLKTIILRDYLT-NKKDFIVLDDVFD 150 (663)
Q Consensus 104 ~~~i~~~l~~~~~~---~~~~~~~~~l~~~~l~~~L~-~kr~LlVLDdv~~ 150 (663)
.+++++.+.+. .+.+. .++. ...+...++ ++--+||+|-|-.
T Consensus 104 ---~a~~lGvdld~lli~qp~~-~Eq~-l~i~~~li~s~~~~lIVIDSvaa 149 (349)
T PRK09354 104 ---YAKKLGVDIDNLLVSQPDT-GEQA-LEIADTLVRSGAVDLIVVDSVAA 149 (349)
T ss_pred ---HHHHcCCCHHHeEEecCCC-HHHH-HHHHHHHhhcCCCCEEEEeChhh
Confidence 23444332100 00111 1222 233434443 3556899999874
No 373
>PRK06820 type III secretion system ATPase; Validated
Probab=73.65 E-value=8 Score=41.42 Aligned_cols=23 Identities=13% Similarity=0.161 Sum_probs=15.9
Q ss_pred cCCcEEEEEeCCCCChhhHHHHH
Q 037018 137 TNKKDFIVLDDVFDDREIWNDLE 159 (663)
Q Consensus 137 ~~kr~LlVLDdv~~~~~~~~~l~ 159 (663)
++|.+|+++||+-.-.+...++.
T Consensus 251 ~G~~VLl~~Dsltr~A~A~REis 273 (440)
T PRK06820 251 RGKKVLLMADSLTRYARAAREIG 273 (440)
T ss_pred cCCCEEEEccchhHHHHHHHHHH
Confidence 48999999999976233334443
No 374
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=73.52 E-value=15 Score=38.00 Aligned_cols=26 Identities=12% Similarity=0.010 Sum_probs=17.5
Q ss_pred cCCcEEEEEeCCCCChhhHHHHHhhC
Q 037018 137 TNKKDFIVLDDVFDDREIWNDLEKFL 162 (663)
Q Consensus 137 ~~kr~LlVLDdv~~~~~~~~~l~~~~ 162 (663)
.++.+|+++|++..-.+...++...+
T Consensus 252 ~G~dVll~~Ds~tR~A~A~REIs~~l 277 (369)
T cd01134 252 MGYNVALMADSTSRWAEALREISGRL 277 (369)
T ss_pred cCCCEEEEEcChhHHHHHHHHHHHhc
Confidence 47999999999854244455555433
No 375
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=73.49 E-value=2 Score=25.59 Aligned_cols=16 Identities=25% Similarity=0.557 Sum_probs=9.3
Q ss_pred ccccceEEeecCCCCC
Q 037018 614 MPKLESLIVNPCAYLR 629 (663)
Q Consensus 614 l~~L~~L~l~~c~~l~ 629 (663)
+|+|+.|+|++|+.++
T Consensus 1 c~~L~~L~l~~C~~it 16 (26)
T smart00367 1 CPNLRELDLSGCTNIT 16 (26)
T ss_pred CCCCCEeCCCCCCCcC
Confidence 3556666666666554
No 376
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=73.47 E-value=1.9 Score=38.73 Aligned_cols=17 Identities=6% Similarity=0.008 Sum_probs=14.4
Q ss_pred EEEEec-chhhHHHHHhc
Q 037018 45 FLTAVA-YKTAFVADIYN 61 (663)
Q Consensus 45 vi~i~G-GKTtla~~v~~ 61 (663)
+.|..| ||||+|+.+.+
T Consensus 4 l~G~~GsGKST~a~~l~~ 21 (150)
T cd02021 4 VMGVSGSGKSTVGKALAE 21 (150)
T ss_pred EEcCCCCCHHHHHHHHHh
Confidence 556667 99999999988
No 377
>PRK04040 adenylate kinase; Provisional
Probab=73.39 E-value=11 Score=35.45 Aligned_cols=19 Identities=11% Similarity=0.025 Sum_probs=14.5
Q ss_pred eEEEEEec-chhhHHHHHhc
Q 037018 43 LQFLTAVA-YKTAFVADIYN 61 (663)
Q Consensus 43 ~~vi~i~G-GKTtla~~v~~ 61 (663)
+-|.|+.| ||||+++.+..
T Consensus 5 i~v~G~pG~GKtt~~~~l~~ 24 (188)
T PRK04040 5 VVVTGVPGVGKTTVLNKALE 24 (188)
T ss_pred EEEEeCCCCCHHHHHHHHHH
Confidence 34445555 99999999988
No 378
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=73.35 E-value=14 Score=35.11 Aligned_cols=49 Identities=18% Similarity=0.228 Sum_probs=28.9
Q ss_pred HHHHHHhhcCCcEEEEEeCCCC--ChhhHHHHHhhCCCC-CCCceEEEEEeC
Q 037018 129 TIILRDYLTNKKDFIVLDDVFD--DREIWNDLEKFLPDN-QNGSRVLILVTD 177 (663)
Q Consensus 129 ~~~l~~~L~~kr~LlVLDdv~~--~~~~~~~l~~~~~~~-~~gskIiiT~r~ 177 (663)
.-.+-+.+-.+.=+++||+.-. |....+.+...+... ..|.-||++|.+
T Consensus 112 rv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~ 163 (200)
T cd03217 112 RNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHY 163 (200)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecC
Confidence 3345566666777889999886 555555555444322 235556666543
No 379
>PHA00729 NTP-binding motif containing protein
Probab=73.21 E-value=2.8 Score=40.39 Aligned_cols=30 Identities=10% Similarity=-0.006 Sum_probs=20.8
Q ss_pred HHHHHHHhcCCCCceEEEEEec----chhhHHHHHhc
Q 037018 29 KAVLVWLFMLDSMWLQFLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 29 ~~i~~~L~~~~~~~~~vi~i~G----GKTtla~~v~~ 61 (663)
+++++-+.... ..-|.|.| ||||||.+|.+
T Consensus 6 k~~~~~l~~~~---f~nIlItG~pGvGKT~LA~aLa~ 39 (226)
T PHA00729 6 KKIVSAYNNNG---FVSAVIFGKQGSGKTTYALKVAR 39 (226)
T ss_pred HHHHHHHhcCC---eEEEEEECCCCCCHHHHHHHHHH
Confidence 34555554443 34566777 99999999988
No 380
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=73.16 E-value=1.8 Score=40.29 Aligned_cols=21 Identities=10% Similarity=0.132 Sum_probs=17.4
Q ss_pred ceEEEEEec-chhhHHHHHhcC
Q 037018 42 WLQFLTAVA-YKTAFVADIYNN 62 (663)
Q Consensus 42 ~~~vi~i~G-GKTtla~~v~~~ 62 (663)
++-++|-.| ||||+|+.+.+.
T Consensus 2 riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 456777777 999999999984
No 381
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=73.16 E-value=6.1 Score=40.53 Aligned_cols=96 Identities=16% Similarity=-0.002 Sum_probs=51.6
Q ss_pred HHHHHHHhcCCCCceEEEEEec----chhhHHHHHhcCCCccccCCCCccccCCceeeccCCCcceEeCCCcchhHHHHH
Q 037018 29 KAVLVWLFMLDSMWLQFLTAVA----YKTAFVADIYNNNVDLSAMNPKLRVPKRFINKAFPVAFPVDVNCACNAQLNHIL 104 (663)
Q Consensus 29 ~~i~~~L~~~~~~~~~vi~i~G----GKTtla~~v~~~~~~~~~~~~~~~~~~~F~~~~~~~~~~v~vs~~~~~~~~~l~ 104 (663)
..+=.+|....-+.-+++-|+| ||||||-++.- .....-...+| +.....++ ..
T Consensus 41 ~~LD~~Lg~GGlp~G~iteI~Gp~GsGKTtLal~~~~------------~~~~~g~~~vy-----Id~E~~~~--~~--- 98 (325)
T cd00983 41 LSLDIALGIGGYPKGRIIEIYGPESSGKTTLALHAIA------------EAQKLGGTVAF-----IDAEHALD--PV--- 98 (325)
T ss_pred HHHHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHH------------HHHHcCCCEEE-----ECccccHH--HH---
Confidence 3344445423334567888888 99999999877 33444456777 77666666 42
Q ss_pred HHHHHHhCCCCCc---chhhhhHhhHHHHHHHHhhc-CCcEEEEEeCCCC
Q 037018 105 DDIIKSVMPPSRV---NVIISEDYKLKTIILRDYLT-NKKDFIVLDDVFD 150 (663)
Q Consensus 105 ~~i~~~l~~~~~~---~~~~~~~~~l~~~~l~~~L~-~kr~LlVLDdv~~ 150 (663)
.+++++.+.+. .+.++ .++. ...+...++ +.--+||+|-|-.
T Consensus 99 --~a~~lGvd~~~l~v~~p~~-~eq~-l~i~~~li~s~~~~lIVIDSvaa 144 (325)
T cd00983 99 --YAKKLGVDLDNLLISQPDT-GEQA-LEIADSLVRSGAVDLIVVDSVAA 144 (325)
T ss_pred --HHHHcCCCHHHheecCCCC-HHHH-HHHHHHHHhccCCCEEEEcchHh
Confidence 23333321100 00111 1223 333444443 3556899999764
No 382
>PRK13343 F0F1 ATP synthase subunit alpha; Provisional
Probab=73.11 E-value=10 Score=41.30 Aligned_cols=95 Identities=15% Similarity=0.161 Sum_probs=49.3
Q ss_pred ceEEEEEec-chhhHH-HHHhcCCCccccCCCCccccCCcee-eccCCCcceEeCCCcchhHHHHHHHHHHHhCC-----
Q 037018 42 WLQFLTAVA-YKTAFV-ADIYNNNVDLSAMNPKLRVPKRFIN-KAFPVAFPVDVNCACNAQLNHILDDIIKSVMP----- 113 (663)
Q Consensus 42 ~~~vi~i~G-GKTtla-~~v~~~~~~~~~~~~~~~~~~~F~~-~~~~~~~~v~vs~~~~~~~~~l~~~i~~~l~~----- 113 (663)
+..++|=.| |||||| ..+.|.. .-|. +++ +-+.+... .+.++.+++...=..
T Consensus 164 R~~I~g~~g~GKt~Lal~~i~~~~--------------~~dv~~V~-----~~IGer~r-ev~e~~~~l~~~~~l~~tvv 223 (502)
T PRK13343 164 RELIIGDRQTGKTAIAIDAIINQK--------------DSDVICVY-----VAIGQKAS-AVARVIETLREHGALEYTTV 223 (502)
T ss_pred EEEeeCCCCCCccHHHHHHHHhhc--------------CCCEEEEE-----EEeccChH-HHHHHHHHHHhcCccceeEE
Confidence 444444444 999995 7777732 2243 366 66666544 155566665543211
Q ss_pred ----CCCcchhhhh----HhhHHHHHHHHhhcCCcEEEEEeCCCCChhhHHHHH
Q 037018 114 ----PSRVNVIISE----DYKLKTIILRDYLTNKKDFIVLDDVFDDREIWNDLE 159 (663)
Q Consensus 114 ----~~~~~~~~~~----~~~l~~~~l~~~L~~kr~LlVLDdv~~~~~~~~~l~ 159 (663)
.+........ .-.. ++.+++ ++|.+|+|+||+..-...+.++.
T Consensus 224 V~atsd~~~~~r~~ap~~a~ai-AEyfrd--~G~~VLlv~DdlTr~A~A~REis 274 (502)
T PRK13343 224 VVAEASDPPGLQYLAPFAGCAI-AEYFRD--QGQDALIVYDDLSKHAAAYRELS 274 (502)
T ss_pred EEecccccHHHHHHHHHHHHHH-HHHHHh--CCCCEEEEecchHHHHHHHHHHH
Confidence 1111111111 1122 233333 57999999999976344555555
No 383
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=72.89 E-value=9.5 Score=38.85 Aligned_cols=39 Identities=26% Similarity=0.293 Sum_probs=28.3
Q ss_pred HHHHHHhhcCCcEEEEEeCCCCChhhHHHHHhhCCCCCCCc
Q 037018 129 TIILRDYLTNKKDFIVLDDVFDDREIWNDLEKFLPDNQNGS 169 (663)
Q Consensus 129 ~~~l~~~L~~kr~LlVLDdv~~~~~~~~~l~~~~~~~~~gs 169 (663)
...++..|+...=-||+..|.+ .+.|+.+ .+...++.|+
T Consensus 194 ~~~l~~aLR~~pD~iivGEiR~-~ea~~~l-~a~~tGh~G~ 232 (299)
T TIGR02782 194 TRLLKATLRLRPDRIIVGEVRG-GEALDLL-KAWNTGHPGG 232 (299)
T ss_pred HHHHHHHhcCCCCEEEEeccCC-HHHHHHH-HHHHcCCCCe
Confidence 5668888998899999999999 8777654 3444444443
No 384
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=72.68 E-value=3 Score=48.47 Aligned_cols=43 Identities=16% Similarity=0.093 Sum_probs=33.4
Q ss_pred ccccchhhcHHHHHHHHhcCC---CCceEEEEEec----chhhHHHHHhc
Q 037018 19 CSSKTVKVKVKAVLVWLFMLD---SMWLQFLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 19 ~~~~G~~~~~~~i~~~L~~~~---~~~~~vi~i~G----GKTtla~~v~~ 61 (663)
...+|.+.-+++|+++|.... ...-.++.++| ||||+|+.+..
T Consensus 322 ~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~ 371 (784)
T PRK10787 322 TDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAK 371 (784)
T ss_pred hhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHH
Confidence 458899999999998886311 11345677888 99999999998
No 385
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=72.39 E-value=2.9 Score=48.51 Aligned_cols=39 Identities=15% Similarity=0.229 Sum_probs=24.9
Q ss_pred CCcEEEEEeCCCC--ChhhHHHHHhhC-CC-CCCCceEEEEEe
Q 037018 138 NKKDFIVLDDVFD--DREIWNDLEKFL-PD-NQNGSRVLILVT 176 (663)
Q Consensus 138 ~kr~LlVLDdv~~--~~~~~~~l~~~~-~~-~~~gskIiiT~r 176 (663)
.++-|+++|.... |+.+-..+...+ .. ...|+.+|+||-
T Consensus 401 ~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~~g~~viitTH 443 (771)
T TIGR01069 401 TENSLVLFDELGAGTDPDEGSALAISILEYLLKQNAQVLITTH 443 (771)
T ss_pred CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECC
Confidence 4788999999987 555555553221 11 235788888854
No 386
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=72.37 E-value=26 Score=37.76 Aligned_cols=21 Identities=24% Similarity=0.037 Sum_probs=16.9
Q ss_pred ceEEEEEec----chhhHHHHHhcC
Q 037018 42 WLQFLTAVA----YKTAFVADIYNN 62 (663)
Q Consensus 42 ~~~vi~i~G----GKTtla~~v~~~ 62 (663)
+..+|-++| ||||.|.++...
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~ 118 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARY 118 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 356777777 999999999873
No 387
>PRK03839 putative kinase; Provisional
Probab=72.33 E-value=1.9 Score=40.20 Aligned_cols=20 Identities=10% Similarity=-0.001 Sum_probs=15.5
Q ss_pred eEEEEEec-chhhHHHHHhcC
Q 037018 43 LQFLTAVA-YKTAFVADIYNN 62 (663)
Q Consensus 43 ~~vi~i~G-GKTtla~~v~~~ 62 (663)
+-++|..| ||||+|+.+.+.
T Consensus 3 I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 3 IAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 44555566 999999999993
No 388
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=72.28 E-value=12 Score=42.89 Aligned_cols=115 Identities=15% Similarity=0.051 Sum_probs=67.7
Q ss_pred ccccchhhcHHHHHHHHhc------CCCCceEEEEEec----chhhHHHHHhcCCCccccCCCCccccCCc---eeeccC
Q 037018 19 CSSKTVKVKVKAVLVWLFM------LDSMWLQFLTAVA----YKTAFVADIYNNNVDLSAMNPKLRVPKRF---INKAFP 85 (663)
Q Consensus 19 ~~~~G~~~~~~~i~~~L~~------~~~~~~~vi~i~G----GKTtla~~v~~~~~~~~~~~~~~~~~~~F---~~~~~~ 85 (663)
..++|-+..++.|-+.+.. ++..++++.=.+| |||-||+++.... | +..+-
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~L---------------fg~e~aliR- 554 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEAL---------------FGDEQALIR- 554 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHh---------------cCCCcccee-
Confidence 3678999999999888854 2222455555566 9999998876622 3 22222
Q ss_pred CCcceEeCCCcchhHHHHHHHHHHHhCCCCCcchhhhhHhhHHHHHHHHhhcCCcE-EEEEeCCCC-ChhhHHHHHhhCC
Q 037018 86 VAFPVDVNCACNAQLNHILDDIIKSVMPPSRVNVIISEDYKLKTIILRDYLTNKKD-FIVLDDVFD-DREIWNDLEKFLP 163 (663)
Q Consensus 86 ~~~~v~vs~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~~l~~~L~~kr~-LlVLDdv~~-~~~~~~~l~~~~~ 163 (663)
+.+|.--. -..+.+-++.+...-+.++ .-.+-+.+++|.| .|.||+|.. .++..+-+...+.
T Consensus 555 ----~DMSEy~E------kHsVSrLIGaPPGYVGyee------GG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlD 618 (786)
T COG0542 555 ----IDMSEYME------KHSVSRLIGAPPGYVGYEE------GGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLD 618 (786)
T ss_pred ----echHHHHH------HHHHHHHhCCCCCCceecc------ccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhc
Confidence 22332111 1122333343322212222 2445677788988 778899986 5788888888887
Q ss_pred CC
Q 037018 164 DN 165 (663)
Q Consensus 164 ~~ 165 (663)
++
T Consensus 619 dG 620 (786)
T COG0542 619 DG 620 (786)
T ss_pred CC
Confidence 54
No 389
>PRK06762 hypothetical protein; Provisional
Probab=72.24 E-value=2.7 Score=38.48 Aligned_cols=18 Identities=11% Similarity=0.146 Sum_probs=14.9
Q ss_pred EEEEEec----chhhHHHHHhc
Q 037018 44 QFLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 44 ~vi~i~G----GKTtla~~v~~ 61 (663)
.+|.|.| ||||+|+.+.+
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~ 24 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQE 24 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4566666 99999999988
No 390
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=72.22 E-value=42 Score=35.49 Aligned_cols=35 Identities=6% Similarity=-0.005 Sum_probs=23.3
Q ss_pred CCcEEEEEeCCCCChhhHHHHHhhCCCCCCCceEEEE
Q 037018 138 NKKDFIVLDDVFDDREIWNDLEKFLPDNQNGSRVLIL 174 (663)
Q Consensus 138 ~kr~LlVLDdv~~~~~~~~~l~~~~~~~~~gskIiiT 174 (663)
....++|||-... ..+...+...|.. -+-..||+|
T Consensus 351 PdevlLVLsATtk-~~d~~~i~~~F~~-~~idglI~T 385 (436)
T PRK11889 351 PDYICLTLSASMK-SKDMIEIITNFKD-IHIDGIVFT 385 (436)
T ss_pred CCeEEEEECCccC-hHHHHHHHHHhcC-CCCCEEEEE
Confidence 3457888887665 5665666666665 335778888
No 391
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=72.06 E-value=20 Score=36.86 Aligned_cols=65 Identities=12% Similarity=-0.022 Sum_probs=38.5
Q ss_pred HHHHHHHhcCCCCceEEEEEec----chhhHHHHHhcCCCccccCCCCccccCCc----eeeccCCCcceEeCCCcchhH
Q 037018 29 KAVLVWLFMLDSMWLQFLTAVA----YKTAFVADIYNNNVDLSAMNPKLRVPKRF----INKAFPVAFPVDVNCACNAQL 100 (663)
Q Consensus 29 ~~i~~~L~~~~~~~~~vi~i~G----GKTtla~~v~~~~~~~~~~~~~~~~~~~F----~~~~~~~~~~v~vs~~~~~~~ 100 (663)
..+-.+|... -+.-.++-|+| |||++|.++.-.. .....+ ...+| ++....|+ .
T Consensus 89 ~~lD~~l~GG-i~~g~vtei~G~~GsGKT~l~~~~~~~~----------~~~~~~gg~~~~~~y-----i~te~~f~--~ 150 (317)
T PRK04301 89 KELDELLGGG-IETQSITEFYGEFGSGKTQICHQLAVNV----------QLPEEKGGLEGKAVY-----IDTEGTFR--P 150 (317)
T ss_pred HHHHHHhcCC-ccCCcEEEEECCCCCCHhHHHHHHHHHh----------ccccccCCCCceEEE-----EeCCCCcC--H
Confidence 4444444332 22456677777 9999999987633 111111 36788 88888888 6
Q ss_pred HHHHHHHHHHhC
Q 037018 101 NHILDDIIKSVM 112 (663)
Q Consensus 101 ~~l~~~i~~~l~ 112 (663)
.++.+. ++.++
T Consensus 151 ~rl~~~-~~~~g 161 (317)
T PRK04301 151 ERIEQM-AEALG 161 (317)
T ss_pred HHHHHH-HHHcC
Confidence 665543 34443
No 392
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=72.03 E-value=12 Score=38.38 Aligned_cols=38 Identities=18% Similarity=0.253 Sum_probs=28.2
Q ss_pred HHHHHHhhcCCcEEEEEeCCCCChhhHHHHHhhCCCCCCC
Q 037018 129 TIILRDYLTNKKDFIVLDDVFDDREIWNDLEKFLPDNQNG 168 (663)
Q Consensus 129 ~~~l~~~L~~kr~LlVLDdv~~~~~~~~~l~~~~~~~~~g 168 (663)
...++..|+-..-.||+..+.+ .+.|+.+. +...++.|
T Consensus 205 ~~lv~~aLR~~PD~IivGEiRg-~ea~~~l~-a~~tGh~G 242 (323)
T PRK13833 205 ARLLKSTMRLRPDRIIVGEVRD-GAALTLLK-AWNTGHPG 242 (323)
T ss_pred HHHHHHHhCCCCCEEEEeecCC-HHHHHHHH-HHcCCCCc
Confidence 5567888999999999999999 77776544 44444445
No 393
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=72.00 E-value=11 Score=41.48 Aligned_cols=47 Identities=11% Similarity=0.250 Sum_probs=27.2
Q ss_pred HHHHhhcCCcEEEEEeCCCC--ChhhHHHHHhhCCC-CCCCceEEEEEeC
Q 037018 131 ILRDYLTNKKDFIVLDDVFD--DREIWNDLEKFLPD-NQNGSRVLILVTD 177 (663)
Q Consensus 131 ~l~~~L~~kr~LlVLDdv~~--~~~~~~~l~~~~~~-~~~gskIiiT~r~ 177 (663)
.+-+.+-...=+++||+.-. |....+.+...+.. ...|.-||++|.+
T Consensus 153 aLArAL~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHd 202 (549)
T PRK13545 153 GFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHS 202 (549)
T ss_pred HHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECC
Confidence 45555666777889999877 55544444443332 1235556666543
No 394
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=71.91 E-value=17 Score=39.11 Aligned_cols=101 Identities=11% Similarity=0.112 Sum_probs=51.6
Q ss_pred CceEEEEEec-chhhHHHHHhcCCCccccCCCCccccCCceeeccCCCcceEeCCCcchhHHHHHHHHHHHhCC------
Q 037018 41 MWLQFLTAVA-YKTAFVADIYNNNVDLSAMNPKLRVPKRFINKAFPVAFPVDVNCACNAQLNHILDDIIKSVMP------ 113 (663)
Q Consensus 41 ~~~~vi~i~G-GKTtla~~v~~~~~~~~~~~~~~~~~~~F~~~~~~~~~~v~vs~~~~~~~~~l~~~i~~~l~~------ 113 (663)
++..++|=.| |||||+..+.++. .. .+=+.+++ +-+.+... -+.++.+++...=..
T Consensus 144 Qr~~If~~~G~GKt~L~~~~~~~~----------~~-~~~~v~V~-----alIGER~r-Ev~ef~~~~~~~~~l~rtvvV 206 (461)
T TIGR01039 144 GKIGLFGGAGVGKTVLIQELINNI----------AK-EHGGYSVF-----AGVGERTR-EGNDLYHEMKESGVIDKTALV 206 (461)
T ss_pred CEEEeecCCCCChHHHHHHHHHHH----------Hh-cCCCeEEE-----EEecCCch-HHHHHHHHHHhcCCcceeEEE
Confidence 3444444444 9999999987732 11 11125556 66655443 155666666542111
Q ss_pred --CCCcchhhhh-HhhHHHHHHHHhh---cCCcEEEEEeCCCCChhhHHHHH
Q 037018 114 --PSRVNVIISE-DYKLKTIILRDYL---TNKKDFIVLDDVFDDREIWNDLE 159 (663)
Q Consensus 114 --~~~~~~~~~~-~~~l~~~~l~~~L---~~kr~LlVLDdv~~~~~~~~~l~ 159 (663)
..+.+...-. .-.. +-.+-+++ +++.+|+|+||+-.-.+.+.++.
T Consensus 207 ~atsd~p~~~R~~a~~~-a~tiAEyfrd~~G~~VLll~DslTR~A~A~REis 257 (461)
T TIGR01039 207 YGQMNEPPGARMRVALT-GLTMAEYFRDEQGQDVLLFIDNIFRFTQAGSEVS 257 (461)
T ss_pred EECCCCCHHHHHHHHHH-HHHHHHHHHHhcCCeeEEEecchhHHHHHHHHHH
Confidence 1111111111 2222 33444555 46899999999976333344443
No 395
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=71.74 E-value=3 Score=47.47 Aligned_cols=41 Identities=12% Similarity=-0.018 Sum_probs=34.2
Q ss_pred ccchhhcHHHHHHHHhcCCCCceEEEEEec-chhhHHHHHhc
Q 037018 21 SKTVKVKVKAVLVWLFMLDSMWLQFLTAVA-YKTAFVADIYN 61 (663)
Q Consensus 21 ~~G~~~~~~~i~~~L~~~~~~~~~vi~i~G-GKTtla~~v~~ 61 (663)
++||+++++++++.|..-...+.-.||=.| |||++|.-+..
T Consensus 172 vIGRd~EI~r~iqIL~RR~KNNPvLiGEpGVGKTAIvEGLA~ 213 (786)
T COG0542 172 VIGRDEEIRRTIQILSRRTKNNPVLVGEPGVGKTAIVEGLAQ 213 (786)
T ss_pred CcChHHHHHHHHHHHhccCCCCCeEecCCCCCHHHHHHHHHH
Confidence 789999999999999987665677788888 99997665544
No 396
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=71.72 E-value=16 Score=37.42 Aligned_cols=54 Identities=13% Similarity=0.134 Sum_probs=35.1
Q ss_pred ceEEEEEec----chhhHHHHHhcCCCccccCCCCccccC----CceeeccCCCcceEeCCCcchhHHHHHHHHHHHhCC
Q 037018 42 WLQFLTAVA----YKTAFVADIYNNNVDLSAMNPKLRVPK----RFINKAFPVAFPVDVNCACNAQLNHILDDIIKSVMP 113 (663)
Q Consensus 42 ~~~vi~i~G----GKTtla~~v~~~~~~~~~~~~~~~~~~----~F~~~~~~~~~~v~vs~~~~~~~~~l~~~i~~~l~~ 113 (663)
.-+++-|+| |||+|+..++-.. .... .=...+| ++....|+ ..++.+ +++.++.
T Consensus 95 ~G~iteI~G~~GsGKTql~lqla~~~----------~~~~~~gg~~~~vvY-----IdtE~~f~--~eRi~~-~a~~~g~ 156 (313)
T TIGR02238 95 SMSITEVFGEFRCGKTQLSHTLCVTA----------QLPREMGGGNGKVAY-----IDTEGTFR--PDRIRA-IAERFGV 156 (313)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHH----------hcchhhcCCCCeEEE-----EEcCCCCC--HHHHHH-HHHHcCC
Confidence 557777888 9999998865322 2211 1135778 88888888 777654 4555543
No 397
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=71.60 E-value=3 Score=40.40 Aligned_cols=20 Identities=20% Similarity=0.228 Sum_probs=16.4
Q ss_pred ceEEEEEec----chhhHHHHHhc
Q 037018 42 WLQFLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 42 ~~~vi~i~G----GKTtla~~v~~ 61 (663)
+-+++.|.| ||||+.+.|.-
T Consensus 29 ~~~~~~l~G~n~~GKstll~~i~~ 52 (222)
T cd03285 29 KSRFLIITGPNMGGKSTYIRQIGV 52 (222)
T ss_pred CCeEEEEECCCCCChHHHHHHHHH
Confidence 457899999 99999888654
No 398
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=71.43 E-value=3.2 Score=35.86 Aligned_cols=22 Identities=18% Similarity=0.021 Sum_probs=17.7
Q ss_pred ceEEEEEec----chhhHHHHHhcCC
Q 037018 42 WLQFLTAVA----YKTAFVADIYNNN 63 (663)
Q Consensus 42 ~~~vi~i~G----GKTtla~~v~~~~ 63 (663)
.-.||...| ||||++|.+....
T Consensus 14 ~g~vi~L~GdLGaGKTtf~r~l~~~l 39 (123)
T PF02367_consen 14 PGDVILLSGDLGAGKTTFVRGLARAL 39 (123)
T ss_dssp S-EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHc
Confidence 347888888 9999999998843
No 399
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=71.10 E-value=8.5 Score=45.01 Aligned_cols=42 Identities=21% Similarity=0.132 Sum_probs=30.9
Q ss_pred cccchhhcHHHHHHHHhcC---CCCceEEEEEec----chhhHHHHHhc
Q 037018 20 SSKTVKVKVKAVLVWLFML---DSMWLQFLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 20 ~~~G~~~~~~~i~~~L~~~---~~~~~~vi~i~G----GKTtla~~v~~ 61 (663)
..+|.+.-+++|.+++... ...+-.++.++| ||||+|+.+.+
T Consensus 321 ~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~ 369 (775)
T TIGR00763 321 DHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAK 369 (775)
T ss_pred hcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 5789999999988876421 111234677777 99999999999
No 400
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=71.08 E-value=2.3 Score=38.32 Aligned_cols=19 Identities=11% Similarity=0.043 Sum_probs=15.9
Q ss_pred eEEEEEec-chhhHHHHHhc
Q 037018 43 LQFLTAVA-YKTAFVADIYN 61 (663)
Q Consensus 43 ~~vi~i~G-GKTtla~~v~~ 61 (663)
+-++|..| ||||+|+.+..
T Consensus 2 i~l~G~~GsGKstla~~la~ 21 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAK 21 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 45677777 99999999987
No 401
>PRK04196 V-type ATP synthase subunit B; Provisional
Probab=70.87 E-value=13 Score=40.18 Aligned_cols=101 Identities=14% Similarity=0.234 Sum_probs=54.2
Q ss_pred CceEEEEEec-chhhHHHHHhcCCCccccCCCCcccc---CCceeeccCCCcceEeCCCcchhHHHHHHHHHHHhCCC--
Q 037018 41 MWLQFLTAVA-YKTAFVADIYNNNVDLSAMNPKLRVP---KRFINKAFPVAFPVDVNCACNAQLNHILDDIIKSVMPP-- 114 (663)
Q Consensus 41 ~~~~vi~i~G-GKTtla~~v~~~~~~~~~~~~~~~~~---~~F~~~~~~~~~~v~vs~~~~~~~~~l~~~i~~~l~~~-- 114 (663)
++..++|-.| |||||+..+.++. ... +.| .+++ +-+.+..+ .+.++.+++...=..+
T Consensus 144 QR~gIfgg~G~GKs~L~~~ia~~~----------~~d~~~~~~-v~V~-----~~iGeRgr-Ev~e~~~~~~~~~~l~rt 206 (460)
T PRK04196 144 QKLPIFSGSGLPHNELAAQIARQA----------KVLGEEENF-AVVF-----AAMGITFE-EANFFMEDFEETGALERS 206 (460)
T ss_pred CEEEeeCCCCCCccHHHHHHHHhh----------hhccCCCce-EEEE-----EEeccccH-HHHHHHHHHHhcCCcceE
Confidence 3555554444 9999999999965 332 122 4556 66655543 1555666665532111
Q ss_pred ------CCcchhhhh-HhhHHHHHHHHhhc---CCcEEEEEeCCCCChhhHHHHH
Q 037018 115 ------SRVNVIISE-DYKLKTIILRDYLT---NKKDFIVLDDVFDDREIWNDLE 159 (663)
Q Consensus 115 ------~~~~~~~~~-~~~l~~~~l~~~L~---~kr~LlVLDdv~~~~~~~~~l~ 159 (663)
.+.+..... .-.. ..-+-++++ +|++|+++||+..-.+...++.
T Consensus 207 vvV~atsd~p~~~R~~a~~~-a~tiAEyfr~d~G~~VLli~DslTR~A~A~REIs 260 (460)
T PRK04196 207 VVFLNLADDPAIERILTPRM-ALTAAEYLAFEKGMHVLVILTDMTNYCEALREIS 260 (460)
T ss_pred EEEEEcCCCCHHHHHHHHHH-HHHHHHHHHHhcCCcEEEEEcChHHHHHHHHHHH
Confidence 111111111 2222 344556665 4999999999876233444444
No 402
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=70.70 E-value=7.6 Score=38.54 Aligned_cols=101 Identities=17% Similarity=0.059 Sum_probs=52.1
Q ss_pred HHHHHHHhcCCCCceEEEEEec----chhhHHHHHhcCCCccccCCCCccccCC----ceeeccCCCcceEeCCCcchhH
Q 037018 29 KAVLVWLFMLDSMWLQFLTAVA----YKTAFVADIYNNNVDLSAMNPKLRVPKR----FINKAFPVAFPVDVNCACNAQL 100 (663)
Q Consensus 29 ~~i~~~L~~~~~~~~~vi~i~G----GKTtla~~v~~~~~~~~~~~~~~~~~~~----F~~~~~~~~~~v~vs~~~~~~~ 100 (663)
+.+=++|...= ..-.|.-|+| |||.|+-.++-+. .+... =...+| ++-...|. .
T Consensus 25 ~~lD~~L~GGi-~~g~itEi~G~~gsGKTql~l~l~~~~----------~l~~~~~g~~~~vvy-----idTe~~f~--~ 86 (256)
T PF08423_consen 25 KSLDELLGGGI-PTGSITEIVGESGSGKTQLCLQLAVNV----------QLPEEIGGLGGKVVY-----IDTEGTFS--P 86 (256)
T ss_dssp HHHHHHTTSSE-ETTSEEEEEESTTSSHHHHHHHHHHHT----------TSGGCTTSSSSEEEE-----EESSSSS---H
T ss_pred HHHHHhhCCCC-CCCcEEEEEEecccccchHHHHHHHHh----------hcccccccCCCceEE-----EeCCCCCC--H
Confidence 34444553321 2345666666 9999998876533 22221 124778 88888888 7
Q ss_pred HHHHHHHHHHhCCCCC----------cchhhhhHhhHHHHHHHHhhcCCcE-EEEEeCCCC
Q 037018 101 NHILDDIIKSVMPPSR----------VNVIISEDYKLKTIILRDYLTNKKD-FIVLDDVFD 150 (663)
Q Consensus 101 ~~l~~~i~~~l~~~~~----------~~~~~~~~~~l~~~~l~~~L~~kr~-LlVLDdv~~ 150 (663)
.++.+ |++....+.+ ....++ ..++ ...+...+.+.++ |||+|.+-.
T Consensus 87 ~Rl~~-i~~~~~~~~~~~l~~I~v~~~~~~~~-l~~~-L~~l~~~l~~~~ikLIVIDSIaa 144 (256)
T PF08423_consen 87 ERLQQ-IAERFGLDPEEILDNIFVIRVFDLEE-LLEL-LEQLPKLLSESKIKLIVIDSIAA 144 (256)
T ss_dssp HHHHH-HHHHTTS-HHHHHHTEEEEE-SSHHH-HHHH-HHHHHHHHHHSCEEEEEEETSSH
T ss_pred HHHHH-HhhccccccchhhhceeeeecCCHHH-HHHH-HHHHHhhccccceEEEEecchHH
Confidence 77654 5554332110 000111 2223 3334444433344 889998754
No 403
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=70.60 E-value=3.2 Score=39.69 Aligned_cols=20 Identities=20% Similarity=0.263 Sum_probs=18.4
Q ss_pred ceEEEEEec----chhhHHHHHhc
Q 037018 42 WLQFLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 42 ~~~vi~i~G----GKTtla~~v~~ 61 (663)
.+++|+++| |||||.+++.+
T Consensus 21 ~~~~i~~~G~~gsGKTTli~~l~~ 44 (207)
T TIGR00073 21 GLVVLNFMSSPGSGKTTLIEKLID 44 (207)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 589999999 99999999988
No 404
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=70.54 E-value=8.2 Score=37.04 Aligned_cols=44 Identities=2% Similarity=0.057 Sum_probs=35.8
Q ss_pred cccchhhcHHHHHHHHhcCCC-CceEEEEEec-chhhHHHHHhcCC
Q 037018 20 SSKTVKVKVKAVLVWLFMLDS-MWLQFLTAVA-YKTAFVADIYNNN 63 (663)
Q Consensus 20 ~~~G~~~~~~~i~~~L~~~~~-~~~~vi~i~G-GKTtla~~v~~~~ 63 (663)
..||+|.-.+++...++..+- =.+-|||=.| |||||...+|...
T Consensus 25 gyvGidtI~~Qm~~k~mk~GF~FNIMVVgqSglgkstlinTlf~s~ 70 (336)
T KOG1547|consen 25 GYVGIDTIIEQMRKKTMKTGFDFNIMVVGQSGLGKSTLINTLFKSH 70 (336)
T ss_pred ccccHHHHHHHHHHHHHhccCceEEEEEecCCCCchhhHHHHHHHH
Confidence 789999999999998887664 2466677777 9999999988844
No 405
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=70.40 E-value=15 Score=38.19 Aligned_cols=54 Identities=15% Similarity=0.115 Sum_probs=35.0
Q ss_pred ceEEEEEec----chhhHHHHHhcCCCccccCCCCccccC----CceeeccCCCcceEeCCCcchhHHHHHHHHHHHhCC
Q 037018 42 WLQFLTAVA----YKTAFVADIYNNNVDLSAMNPKLRVPK----RFINKAFPVAFPVDVNCACNAQLNHILDDIIKSVMP 113 (663)
Q Consensus 42 ~~~vi~i~G----GKTtla~~v~~~~~~~~~~~~~~~~~~----~F~~~~~~~~~~v~vs~~~~~~~~~l~~~i~~~l~~ 113 (663)
.-.++-|+| |||+|+-.++=.. .... .-...+| ++....|+ ..++.+ +++.++.
T Consensus 125 ~G~ItEI~G~~GsGKTql~lqlav~~----------qlp~~~gg~~~~vvy-----IdTE~tF~--peRl~~-ia~~~g~ 186 (344)
T PLN03187 125 TRCITEAFGEFRSGKTQLAHTLCVTT----------QLPTEMGGGNGKVAY-----IDTEGTFR--PDRIVP-IAERFGM 186 (344)
T ss_pred CCeEEEEecCCCCChhHHHHHHHHHH----------hcchhhCCCCceEEE-----EEcCCCCC--HHHHHH-HHHHcCC
Confidence 456666777 9999998875322 2211 1236788 88888888 777665 4555543
No 406
>PRK07960 fliI flagellum-specific ATP synthase; Validated
Probab=70.25 E-value=10 Score=40.57 Aligned_cols=23 Identities=4% Similarity=0.169 Sum_probs=16.4
Q ss_pred cCCcEEEEEeCCCCChhhHHHHH
Q 037018 137 TNKKDFIVLDDVFDDREIWNDLE 159 (663)
Q Consensus 137 ~~kr~LlVLDdv~~~~~~~~~l~ 159 (663)
++|.+|+++||+-.-.+.+.++.
T Consensus 263 ~G~~Vll~~DslTr~A~A~rEis 285 (455)
T PRK07960 263 RGQHVLLIMDSLTRYAMAQREIA 285 (455)
T ss_pred cCCCeEEEecchhHHHHHHHHHH
Confidence 47999999999976344444444
No 407
>TIGR00962 atpA proton translocating ATP synthase, F1 alpha subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. The alpha-subunit contains a highly conserved adenine-specific noncatalytic nucleotide-binding domain. The conserved amino acid sequence is Gly-X-X-X-X-Gly-Lys. Proton translocating ATP synthase F1, alpha subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), B subunit.
Probab=70.22 E-value=16 Score=39.90 Aligned_cols=95 Identities=14% Similarity=0.152 Sum_probs=50.4
Q ss_pred ceEEEEEec-chhhHH-HHHhcCCCccccCCCCccccCCcee-eccCCCcceEeCCCcchhHHHHHHHHHHHhCC-----
Q 037018 42 WLQFLTAVA-YKTAFV-ADIYNNNVDLSAMNPKLRVPKRFIN-KAFPVAFPVDVNCACNAQLNHILDDIIKSVMP----- 113 (663)
Q Consensus 42 ~~~vi~i~G-GKTtla-~~v~~~~~~~~~~~~~~~~~~~F~~-~~~~~~~~v~vs~~~~~~~~~l~~~i~~~l~~----- 113 (663)
+..++|=.| |||||| ..|.+.. .-+. +++ +-+.+... .+.++.+++...=..
T Consensus 163 r~~I~g~~g~GKt~Lal~~i~~~~--------------~~dv~~V~-----~~IGer~r-ev~e~~~~~~~~~~l~~tvv 222 (501)
T TIGR00962 163 RELIIGDRQTGKTAVAIDTIINQK--------------DSDVYCVY-----VAIGQKAS-TVAQVVRKLEEHGAMDYTIV 222 (501)
T ss_pred EEEeecCCCCCccHHHHHHHHhhc--------------CCCeEEEE-----EEccCChH-HHHHHHHHHHhcCccceeEE
Confidence 444444444 999995 7787722 2344 366 66766544 155566666553211
Q ss_pred ----CCCcchhhhh----HhhHHHHHHHHhhcCCcEEEEEeCCCCChhhHHHHH
Q 037018 114 ----PSRVNVIISE----DYKLKTIILRDYLTNKKDFIVLDDVFDDREIWNDLE 159 (663)
Q Consensus 114 ----~~~~~~~~~~----~~~l~~~~l~~~L~~kr~LlVLDdv~~~~~~~~~l~ 159 (663)
.+........ .-.. ++.+++ ++|.+|||+||+..-...+.++.
T Consensus 223 V~atsd~p~~~r~~a~~~a~ai-AEyfrd--~G~~VLlv~Ddltr~A~A~REis 273 (501)
T TIGR00962 223 VAATASDSASLQYLAPYTGCTM-AEYFRD--NGKHALIIYDDLSKHAVAYRQIS 273 (501)
T ss_pred EEecCCCCHHHHHHHHHHHHHH-HHHHHH--cCCCEEEEecchHHHHHHHHHHH
Confidence 1111111111 1222 333333 47999999999976344555554
No 408
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=70.04 E-value=12 Score=43.28 Aligned_cols=56 Identities=14% Similarity=0.170 Sum_probs=33.7
Q ss_pred HHHHhhcCCcEEEEEeCCCC--ChhhHHHHHhhCCCCCCCceEEEEEeCCCCC---ceEecc
Q 037018 131 ILRDYLTNKKDFIVLDDVFD--DREIWNDLEKFLPDNQNGSRVLILVTDPFLL---TSFELE 187 (663)
Q Consensus 131 ~l~~~L~~kr~LlVLDdv~~--~~~~~~~l~~~~~~~~~gskIiiT~r~~~~~---~~~~l~ 187 (663)
.+-+.+-+++=+++||+.-+ |.+.=..+...+.. .....|+||+|-.... +++.|+
T Consensus 625 aLARall~~p~iliLDEptS~LD~~te~~i~~~l~~-~~~T~IiitHrl~~i~~~D~Iivl~ 685 (710)
T TIGR03796 625 EIARALVRNPSILILDEATSALDPETEKIIDDNLRR-RGCTCIIVAHRLSTIRDCDEIIVLE 685 (710)
T ss_pred HHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh-cCCEEEEEecCHHHHHhCCEEEEEe
Confidence 35555656666778999887 55554555554443 3467888887743210 555554
No 409
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=69.96 E-value=15 Score=41.63 Aligned_cols=47 Identities=13% Similarity=0.100 Sum_probs=30.3
Q ss_pred HHHHhhcCCcEEEEEeCCCC--ChhhHHHHHhhCCCC-CCCceEEEEEeC
Q 037018 131 ILRDYLTNKKDFIVLDDVFD--DREIWNDLEKFLPDN-QNGSRVLILVTD 177 (663)
Q Consensus 131 ~l~~~L~~kr~LlVLDdv~~--~~~~~~~l~~~~~~~-~~gskIiiT~r~ 177 (663)
.+-+.+-.++=+++||+.-+ |.+.-+.+...+... .....|+||+|-
T Consensus 495 alARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~~~~TvIiItHrl 544 (588)
T PRK11174 495 ALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQL 544 (588)
T ss_pred HHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEecCh
Confidence 34455555666778999887 666666666555432 346788888774
No 410
>COG1158 Rho Transcription termination factor [Transcription]
Probab=69.80 E-value=8.8 Score=38.80 Aligned_cols=103 Identities=13% Similarity=0.018 Sum_probs=55.2
Q ss_pred HHHHHHHHhcCCCCceEEEEEec----chhhHHHHHhcCCCccccCCCCccccCCceeeccCCCcceEeCCCcchhHHHH
Q 037018 28 VKAVLVWLFMLDSMWLQFLTAVA----YKTAFVADIYNNNVDLSAMNPKLRVPKRFINKAFPVAFPVDVNCACNAQLNHI 103 (663)
Q Consensus 28 ~~~i~~~L~~~~~~~~~vi~i~G----GKTtla~~v~~~~~~~~~~~~~~~~~~~F~~~~~~~~~~v~vs~~~~~~~~~l 103 (663)
.-+++.+..--+.... -=||. |||||.|.|.|.- ..+|=++..| |-.-....+-+.++
T Consensus 160 s~RviDL~~PIGkGQR--~LIVAPPkaGKT~lLq~IA~aI-----------t~N~Pe~~Li-----VLLIDERPEEVTdm 221 (422)
T COG1158 160 STRVIDLISPIGKGQR--GLIVAPPKAGKTTLLQNIANAI-----------TTNHPECELI-----VLLIDERPEEVTDM 221 (422)
T ss_pred hhHHHhhhcccCCCce--eeEecCCCCCchHHHHHHHHHH-----------hcCCCceEEE-----EEEecCCchHHHHH
Confidence 3456665554332112 22334 9999999999932 3456677777 65444333336677
Q ss_pred HHHHHHHhCCCCC--cchhhhhHhhHHHHHHHHhhcCCc-EEEEEeCC
Q 037018 104 LDDIIKSVMPPSR--VNVIISEDYKLKTIILRDYLTNKK-DFIVLDDV 148 (663)
Q Consensus 104 ~~~i~~~l~~~~~--~~~~~~~~~~l~~~~l~~~L~~kr-~LlVLDdv 148 (663)
++.+-.++-.+.. .+.-+-.+.++..++-++....|+ +.|.||-+
T Consensus 222 qrsV~geViaSTFDepp~~HvqVAE~viEkAKRlVE~~kDVVILLDSI 269 (422)
T COG1158 222 QRSVKGEVVASTFDEPPSRHVQVAEMVIEKAKRLVEHGKDVVILLDSI 269 (422)
T ss_pred HHhhcceEEeecCCCcchhhHHHHHHHHHHHHHHHHcCCcEEEEehhH
Confidence 7766544443321 111122234443666667776655 55555554
No 411
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=69.66 E-value=7 Score=44.09 Aligned_cols=73 Identities=4% Similarity=-0.139 Sum_probs=46.2
Q ss_pred ccccchhhcHHHHHHHHhcCCCCceEEEEEec-chhhHHHHHhcCCCccccCCCCccccC-CceeeccCCCcceEeCCCc
Q 037018 19 CSSKTVKVKVKAVLVWLFMLDSMWLQFLTAVA-YKTAFVADIYNNNVDLSAMNPKLRVPK-RFINKAFPVAFPVDVNCAC 96 (663)
Q Consensus 19 ~~~~G~~~~~~~i~~~L~~~~~~~~~vi~i~G-GKTtla~~v~~~~~~~~~~~~~~~~~~-~F~~~~~~~~~~v~vs~~~ 96 (663)
..++|.++.++.+...+.... .+-++|=.| ||||+|+++.+ .+.. +|...+. +.-+ .-
T Consensus 18 ~~viG~~~a~~~l~~a~~~~~--~~ll~G~pG~GKT~la~~la~------------~l~~~~~~~~~~-----~~n~-~~ 77 (608)
T TIGR00764 18 DQVIGQEEAVEIIKKAAKQKR--NVLLIGEPGVGKSMLAKAMAE------------LLPDEELEDILV-----YPNP-ED 77 (608)
T ss_pred hhccCHHHHHHHHHHHHHcCC--CEEEECCCCCCHHHHHHHHHH------------HcCchhheeEEE-----EeCC-CC
Confidence 468899988887777776543 455555566 99999999998 4433 2333333 2111 12
Q ss_pred chhHHHHHHHHHHHhCC
Q 037018 97 NAQLNHILDDIIKSVMP 113 (663)
Q Consensus 97 ~~~~~~l~~~i~~~l~~ 113 (663)
+ ...+++.++.+++.
T Consensus 78 ~--~~~~~~~v~~~~g~ 92 (608)
T TIGR00764 78 P--NMPRIVEVPAGEGR 92 (608)
T ss_pred C--chHHHHHHHHhhch
Confidence 2 45667777777664
No 412
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=69.49 E-value=4.2 Score=39.21 Aligned_cols=18 Identities=17% Similarity=0.233 Sum_probs=15.8
Q ss_pred EEEEEec----chhhHHHHHhc
Q 037018 44 QFLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 44 ~vi~i~G----GKTtla~~v~~ 61 (663)
+++.|.| ||||+.+.+.-
T Consensus 31 ~~~~l~Gpn~sGKstllr~i~~ 52 (216)
T cd03284 31 QILLITGPNMAGKSTYLRQVAL 52 (216)
T ss_pred eEEEEECCCCCChHHHHHHHHH
Confidence 7888999 99999999853
No 413
>PRK10867 signal recognition particle protein; Provisional
Probab=69.46 E-value=16 Score=39.18 Aligned_cols=19 Identities=16% Similarity=0.104 Sum_probs=14.7
Q ss_pred eEEEEEec----chhhHHHHHhc
Q 037018 43 LQFLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 43 ~~vi~i~G----GKTtla~~v~~ 61 (663)
..||.++| ||||.|.++..
T Consensus 100 p~vI~~vG~~GsGKTTtaakLA~ 122 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAGKLAK 122 (433)
T ss_pred CEEEEEECCCCCcHHHHHHHHHH
Confidence 57888888 99997666654
No 414
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=69.26 E-value=4.2 Score=42.15 Aligned_cols=40 Identities=10% Similarity=-0.036 Sum_probs=34.5
Q ss_pred cccchhhcHHHHHHHHhcCCCCceEEEEEec-chhhHHHHHhc
Q 037018 20 SSKTVKVKVKAVLVWLFMLDSMWLQFLTAVA-YKTAFVADIYN 61 (663)
Q Consensus 20 ~~~G~~~~~~~i~~~L~~~~~~~~~vi~i~G-GKTtla~~v~~ 61 (663)
.++|.++.+..+...+..+. .+-+.|-.| |||+||+++..
T Consensus 25 ~~~g~~~~~~~~l~a~~~~~--~vll~G~PG~gKT~la~~lA~ 65 (329)
T COG0714 25 VVVGDEEVIELALLALLAGG--HVLLEGPPGVGKTLLARALAR 65 (329)
T ss_pred eeeccHHHHHHHHHHHHcCC--CEEEECCCCccHHHHHHHHHH
Confidence 48898888888887777776 589999999 99999999999
No 415
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=69.26 E-value=1.3e+02 Score=34.18 Aligned_cols=39 Identities=18% Similarity=0.379 Sum_probs=26.9
Q ss_pred hhHHHHh-hhcccCCCceechHHHHHHHHHcCCCCCCCCccceEEcCHHHHHHHH
Q 037018 248 HLKVCCL-YLCVFRPSIEISTRQLYQLWVAEVSKRRAGGTIKACYVPGFVYTSLF 301 (663)
Q Consensus 248 ~~k~cfl-~~a~Fp~~~~i~~~~Li~~Wi~~g~~g~~~~~~~~~~mhdll~dl~~ 301 (663)
-++-||- |......|-.|.+-..+..|.. .||.+++-+.
T Consensus 583 vlqg~f~~~~~~~~~D~~i~~~~~~s~WL~---------------F~D~l~~~~~ 622 (877)
T KOG1969|consen 583 VLQGCFSIFLRLKYSDLGIGKPANASDWLF---------------FHDLLYQSMY 622 (877)
T ss_pred HHhhhhccccccccccccccchhhhhhHHH---------------hhhHHHHHHH
Confidence 3667886 4445555677888888888865 4888777553
No 416
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=69.06 E-value=13 Score=34.19 Aligned_cols=79 Identities=9% Similarity=0.106 Sum_probs=40.6
Q ss_pred EEEec----chhhHHHHHhcCCCccccCCCCccccCCceeeccCCCcceEeCCCcchhHHHHHHHHHHHhCCCCCcch-h
Q 037018 46 LTAVA----YKTAFVADIYNNNVDLSAMNPKLRVPKRFINKAFPVAFPVDVNCACNAQLNHILDDIIKSVMPPSRVNV-I 120 (663)
Q Consensus 46 i~i~G----GKTtla~~v~~~~~~~~~~~~~~~~~~~F~~~~~~~~~~v~vs~~~~~~~~~l~~~i~~~l~~~~~~~~-~ 120 (663)
+-|.| ||||+|..+.... .. ..++ +.-...++ .++++.|..+.......|. +
T Consensus 4 ili~G~~~sGKS~~a~~l~~~~------------~~---~~~~-----iat~~~~~---~e~~~ri~~h~~~R~~~w~t~ 60 (170)
T PRK05800 4 ILVTGGARSGKSRFAERLAAQS------------GL---QVLY-----IATAQPFD---DEMAARIAHHRQRRPAHWQTV 60 (170)
T ss_pred EEEECCCCccHHHHHHHHHHHc------------CC---CcEe-----CcCCCCCh---HHHHHHHHHHHhcCCCCCeEe
Confidence 44555 9999999998732 11 1223 32223333 4566676665443332232 1
Q ss_pred hhhHhhHHHHHHHHhhcCCcEEEEEeCCCC
Q 037018 121 ISEDYKLKTIILRDYLTNKKDFIVLDDVFD 150 (663)
Q Consensus 121 ~~~~~~l~~~~l~~~L~~kr~LlVLDdv~~ 150 (663)
+. ..++ ...+.+...+.. .+|+|.+..
T Consensus 61 E~-~~~l-~~~i~~~~~~~~-~VlID~Lt~ 87 (170)
T PRK05800 61 EE-PLDL-AELLRADAAPGR-CVLVDCLTT 87 (170)
T ss_pred cc-cccH-HHHHHhhcCCCC-EEEehhHHH
Confidence 11 2344 455554444333 688888644
No 417
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=69.02 E-value=3.6 Score=37.50 Aligned_cols=18 Identities=17% Similarity=0.237 Sum_probs=16.2
Q ss_pred EEEEEec----chhhHHHHHhc
Q 037018 44 QFLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 44 ~vi~i~G----GKTtla~~v~~ 61 (663)
++++|+| |||||++++..
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~ 23 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIP 23 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5788888 99999999998
No 418
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=68.96 E-value=3.3 Score=38.72 Aligned_cols=20 Identities=15% Similarity=0.029 Sum_probs=16.2
Q ss_pred ceEEEEEec----chhhHHHHHhc
Q 037018 42 WLQFLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 42 ~~~vi~i~G----GKTtla~~v~~ 61 (663)
+..+|.|.| ||||+|+.+..
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~ 25 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVE 25 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 356677777 99999999987
No 419
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=68.87 E-value=2.9 Score=37.99 Aligned_cols=17 Identities=24% Similarity=0.331 Sum_probs=14.7
Q ss_pred EEEEec----chhhHHHHHhc
Q 037018 45 FLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 45 vi~i~G----GKTtla~~v~~ 61 (663)
|++|+| ||||+++++..
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~ 21 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVK 21 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 466777 99999999999
No 420
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=68.78 E-value=22 Score=41.38 Aligned_cols=34 Identities=21% Similarity=0.313 Sum_probs=23.4
Q ss_pred CcEEEEEeCCCC-ChhhHHHHHhhCCCCCCCceEEEE
Q 037018 139 KKDFIVLDDVFD-DREIWNDLEKFLPDNQNGSRVLIL 174 (663)
Q Consensus 139 kr~LlVLDdv~~-~~~~~~~l~~~~~~~~~gskIiiT 174 (663)
+.-+||+|+... +......+..... ..|+|||+.
T Consensus 439 ~~~llIvDEasMv~~~~~~~Ll~~~~--~~~~kliLV 473 (744)
T TIGR02768 439 DKDVLVIDEAGMVGSRQMARVLKEAE--EAGAKVVLV 473 (744)
T ss_pred CCcEEEEECcccCCHHHHHHHHHHHH--hcCCEEEEE
Confidence 556899999887 5666666665322 258898866
No 421
>PF10923 DUF2791: P-loop Domain of unknown function (DUF2791); InterPro: IPR021228 This is a family of proteins found in archaea and bacteria. Some of the proteins in this family are annotated as being methyl-accepting chemotaxis proteins and ATP/GTP binding proteins.
Probab=68.73 E-value=16 Score=38.85 Aligned_cols=89 Identities=15% Similarity=0.087 Sum_probs=57.2
Q ss_pred CccCCccccccchhhcHHHHHHHHhcC---CCCceEEEEEec-chhhHHHHHhcCCCccccCCCCccccCCceeeccCCC
Q 037018 12 THSSSTSCSSKTVKVKVKAVLVWLFML---DSMWLQFLTAVA-YKTAFVADIYNNNVDLSAMNPKLRVPKRFINKAFPVA 87 (663)
Q Consensus 12 ~~~~~~~~~~~G~~~~~~~i~~~L~~~---~~~~~~vi~i~G-GKTtla~~v~~~~~~~~~~~~~~~~~~~F~~~~~~~~ 87 (663)
.+..--+.-.|||+.+++.+.+.|..- .+.-.-|+|=+| |||.+.+.+.+.+ ..+.| .++.
T Consensus 18 VP~~Gl~~~~VGr~~e~~~l~~~l~~v~~G~s~~kfi~G~YGsGKTf~l~~i~~~A-----------~~~~f-vvs~--- 82 (416)
T PF10923_consen 18 VPRIGLDHIAVGREREIEALDRDLDRVADGGSSFKFIRGEYGSGKTFFLRLIRERA-----------LEKGF-VVSE--- 82 (416)
T ss_pred CCcccCcceeechHHHHHHHHHHHHHHhCCCCeEEEEEeCCCCcHHHHHHHHHHHH-----------HHcCC-EEEE---
Confidence 333334456799999999999988642 221233455566 9999999999944 23334 3344
Q ss_pred cceEeCCCcc-----hhHHHHHHHHHHHhCCCCCc
Q 037018 88 FPVDVNCACN-----AQLNHILDDIIKSVMPPSRV 117 (663)
Q Consensus 88 ~~v~vs~~~~-----~~~~~l~~~i~~~l~~~~~~ 117 (663)
|.+|.... .....+.++|.+.+.-+...
T Consensus 83 --v~ls~e~~lh~~~g~~~~~Yr~l~~nL~t~~~p 115 (416)
T PF10923_consen 83 --VDLSPERPLHGTGGQLEALYRELMRNLSTKTKP 115 (416)
T ss_pred --EecCCCcccccccccHHHHHHHHHHhcCCCCCC
Confidence 44554221 02677999999999877653
No 422
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=68.64 E-value=4.5 Score=40.00 Aligned_cols=43 Identities=9% Similarity=-0.008 Sum_probs=29.2
Q ss_pred ccccchhhcHHHHHHHHhcC----CC-CceEEEEEec-chhhHHHHHhc
Q 037018 19 CSSKTVKVKVKAVLVWLFML----DS-MWLQFLTAVA-YKTAFVADIYN 61 (663)
Q Consensus 19 ~~~~G~~~~~~~i~~~L~~~----~~-~~~~vi~i~G-GKTtla~~v~~ 61 (663)
..++|-+.-++++.-.+... .. +.+-..|=.| ||||||.-|.+
T Consensus 26 ~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~ 74 (332)
T COG2255 26 DEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIAN 74 (332)
T ss_pred HHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHH
Confidence 46899777777766555431 11 3445555555 99999999999
No 423
>COG3899 Predicted ATPase [General function prediction only]
Probab=68.60 E-value=4.9 Score=47.28 Aligned_cols=41 Identities=10% Similarity=0.026 Sum_probs=33.8
Q ss_pred ccchhhcHHHHHHHHhcCCCCceEEEEEec----chhhHHHHHhc
Q 037018 21 SKTVKVKVKAVLVWLFMLDSMWLQFLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 21 ~~G~~~~~~~i~~~L~~~~~~~~~vi~i~G----GKTtla~~v~~ 61 (663)
++||+.+++.+...+..-......|+.+.| |||+++++|.+
T Consensus 2 l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~ 46 (849)
T COG3899 2 LYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHK 46 (849)
T ss_pred CCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHH
Confidence 789999999999988765443555666666 99999999999
No 424
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=68.59 E-value=3.5 Score=35.32 Aligned_cols=22 Identities=27% Similarity=0.517 Sum_probs=18.2
Q ss_pred ceEEEEEec-chhhHHHHHhcCC
Q 037018 42 WLQFLTAVA-YKTAFVADIYNNN 63 (663)
Q Consensus 42 ~~~vi~i~G-GKTtla~~v~~~~ 63 (663)
+.-+||-+| |||||.++++++.
T Consensus 3 ri~~vG~~gcGKTtL~q~L~G~~ 25 (148)
T COG4917 3 RIAFVGQVGCGKTTLFQSLYGND 25 (148)
T ss_pred eeEEecccccCchhHHHHhhcch
Confidence 355677777 9999999999976
No 425
>PF06431 Polyoma_lg_T_C: Polyomavirus large T antigen C-terminus; InterPro: IPR010932 The group of polyomaviruses is formed by the homonymous murine virus (Py) as well as other representative members such as the simian virus 40 (SV40) and the human BK and JC viruses []. Their large T antigen (T-ag) protein binds to and activates DNA replication from the origin of DNA replication (ori). Insofar as is known, the T-ag binds to the origin first as a monomer to its pentanucleotide recognition element. The monomers are then thought to assemble into hexamers and double hexamers, which constitute the form that is active in initiation of DNA replication. When bound to the ori, T-ag double hexamers encircle DNA []. T-ag is a multidomain protein that contains an N-terminal J domain, which mediates protein interactions (see PDOC00553 from PROSITEDOC, IPR001623 from INTERPRO), a central origin-binding domain (OBD), and a C-terminal superfamily 3 helicase domain (see PDOC51206 from PROSITEDOC, IPR010932 from INTERPRO) []. This entry represents the helicase domain of LTag, which assembles into a hexameric structure containing a positively charged central channel that can bind both single- and double-stranded DNA []. ATP binding and hydrolysis trigger large conformational changes which are thought to be coupled to the melting of origin DNA and the unwinding of duplex DNA []. These conformational changes cause the angles and orientations between regions of a monomer to alter, creating what was described as an "iris"-like motion in the hexamer. In addition to this, six beta hairpins on the channel surface move longitudinally along the central channel, possibly serving as a motor for pulling DNA into the LTag double hexamer for unwinding.; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 2H1L_H 1SVO_A 1SVM_E 1SVL_B 1N25_A 4E2I_K.
Probab=68.55 E-value=5.6 Score=40.81 Aligned_cols=38 Identities=13% Similarity=0.043 Sum_probs=30.5
Q ss_pred chhhcHHHHHHHHhcCCCCceEEEEEec----chhhHHHHHhc
Q 037018 23 TVKVKVKAVLVWLFMLDSMWLQFLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 23 G~~~~~~~i~~~L~~~~~~~~~vi~i~G----GKTtla~~v~~ 61 (663)
++++-+-++.+.+..... +-|-+-.-| ||||||.++.+
T Consensus 136 ~~~~~i~~iL~~lv~N~P-KkRy~lFkGPvNsGKTTlAAAlLd 177 (417)
T PF06431_consen 136 NFDDVILEILKCLVENIP-KKRYWLFKGPVNSGKTTLAAALLD 177 (417)
T ss_dssp THHHHHHHHHHHHHHTBT-TB-EEEEE-STTSSHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhcCCC-cceeEEEecCcCCchHHHHHHHHH
Confidence 567778888888888765 678888889 99999999988
No 426
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=68.44 E-value=3.5 Score=38.30 Aligned_cols=19 Identities=11% Similarity=0.221 Sum_probs=15.8
Q ss_pred EEEEEec----chhhHHHHHhcC
Q 037018 44 QFLTAVA----YKTAFVADIYNN 62 (663)
Q Consensus 44 ~vi~i~G----GKTtla~~v~~~ 62 (663)
++|+|+| ||||||+.+.+.
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHcc
Confidence 3577777 999999999984
No 427
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=68.37 E-value=2.9 Score=40.48 Aligned_cols=19 Identities=5% Similarity=-0.019 Sum_probs=16.0
Q ss_pred eEEEEEec----chhhHHHHHhc
Q 037018 43 LQFLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 43 ~~vi~i~G----GKTtla~~v~~ 61 (663)
-+++.|.| ||||+.+.+.-
T Consensus 31 g~~~~itG~N~~GKStll~~i~~ 53 (222)
T cd03287 31 GYCQIITGPNMGGKSSYIRQVAL 53 (222)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46778888 99999999877
No 428
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=68.35 E-value=2.2 Score=42.65 Aligned_cols=37 Identities=22% Similarity=0.129 Sum_probs=20.2
Q ss_pred HhhHHHHHHHHhhcCCcEEEEEeCCCC---ChhhHHHHHhhC
Q 037018 124 DYKLKTIILRDYLTNKKDFIVLDDVFD---DREIWNDLEKFL 162 (663)
Q Consensus 124 ~~~l~~~~l~~~L~~kr~LlVLDdv~~---~~~~~~~l~~~~ 162 (663)
...+ ...+.+.|. ++.+||+||... .+.++..+....
T Consensus 57 R~~l-~s~v~r~ls-~~~iVI~Dd~nYiKg~RYelyclAr~~ 96 (270)
T PF08433_consen 57 RGSL-KSAVERALS-KDTIVILDDNNYIKGMRYELYCLARAY 96 (270)
T ss_dssp HHHH-HHHHHHHHT-T-SEEEE-S---SHHHHHHHHHHHHHT
T ss_pred HHHH-HHHHHHhhc-cCeEEEEeCCchHHHHHHHHHHHHHHc
Confidence 4445 555566664 457889999987 366666666644
No 429
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=68.23 E-value=4.2 Score=42.85 Aligned_cols=19 Identities=11% Similarity=0.046 Sum_probs=16.5
Q ss_pred eEEEEEec----chhhHHHHHhc
Q 037018 43 LQFLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 43 ~~vi~i~G----GKTtla~~v~~ 61 (663)
--||+|+| |||||+.++..
T Consensus 5 ~~~i~i~G~~gsGKTTl~~~l~~ 27 (369)
T PRK14490 5 PFEIAFCGYSGSGKTTLITALVR 27 (369)
T ss_pred CEEEEEEeCCCCCHHHHHHHHHH
Confidence 35778888 99999999999
No 430
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=68.21 E-value=3.4 Score=48.05 Aligned_cols=39 Identities=13% Similarity=0.259 Sum_probs=24.0
Q ss_pred CCcEEEEEeCCCC--ChhhHHHHHhhCC--CCCCCceEEEEEe
Q 037018 138 NKKDFIVLDDVFD--DREIWNDLEKFLP--DNQNGSRVLILVT 176 (663)
Q Consensus 138 ~kr~LlVLDdv~~--~~~~~~~l~~~~~--~~~~gskIiiT~r 176 (663)
+.+-|++||.... |+.+-..+...+- -...|+.||+||.
T Consensus 406 ~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~vIitTH 448 (782)
T PRK00409 406 DKNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKIIATTH 448 (782)
T ss_pred CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECC
Confidence 4677999999987 5554444433211 1124778888854
No 431
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=68.16 E-value=22 Score=41.24 Aligned_cols=45 Identities=20% Similarity=0.205 Sum_probs=28.4
Q ss_pred HHHhhcCCcEEEEEeCCCC--ChhhHHHHHhhCCCCCCCceEEEEEeC
Q 037018 132 LRDYLTNKKDFIVLDDVFD--DREIWNDLEKFLPDNQNGSRVLILVTD 177 (663)
Q Consensus 132 l~~~L~~kr~LlVLDdv~~--~~~~~~~l~~~~~~~~~gskIiiT~r~ 177 (663)
+-+.+-+++=+++||+.-+ |.+..+.+.. .........|+||+|-
T Consensus 628 lARALl~~p~ILILDEpTSaLD~~te~~i~~-~~~~~~~TvIiItHrl 674 (711)
T TIGR00958 628 IARALVRKPRVLILDEATSALDAECEQLLQE-SRSRASRTVLLIAHRL 674 (711)
T ss_pred HHHHHhcCCCEEEEEccccccCHHHHHHHHH-hhccCCCeEEEEeccH
Confidence 4455555666678999887 6666666665 3333345677777763
No 432
>PLN02796 D-glycerate 3-kinase
Probab=68.10 E-value=3.4 Score=42.51 Aligned_cols=22 Identities=18% Similarity=-0.106 Sum_probs=18.5
Q ss_pred ceEEEEEec----chhhHHHHHhcCC
Q 037018 42 WLQFLTAVA----YKTAFVADIYNNN 63 (663)
Q Consensus 42 ~~~vi~i~G----GKTtla~~v~~~~ 63 (663)
+.-+|||.| ||||||+.+....
T Consensus 99 ~pliIGI~G~sGSGKSTLa~~L~~lL 124 (347)
T PLN02796 99 PPLVIGISAPQGCGKTTLVFALVYLF 124 (347)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHh
Confidence 457899998 9999999999833
No 433
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=68.09 E-value=3.1 Score=44.17 Aligned_cols=21 Identities=14% Similarity=0.273 Sum_probs=18.3
Q ss_pred ceEEEEEec----chhhHHHHHhcC
Q 037018 42 WLQFLTAVA----YKTAFVADIYNN 62 (663)
Q Consensus 42 ~~~vi~i~G----GKTtla~~v~~~ 62 (663)
-++.|+|+| ||||||+++.+.
T Consensus 218 ~~~~IvI~G~~gsGKTTL~~~La~~ 242 (399)
T PRK08099 218 FVRTVAILGGESSGKSTLVNKLANI 242 (399)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 477889998 999999999984
No 434
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=67.81 E-value=8.6 Score=42.00 Aligned_cols=126 Identities=13% Similarity=0.143 Sum_probs=0.0
Q ss_pred EEEEec----chhhHHHHHhcCC---------------------------------------CccccCCCCccccCCcee
Q 037018 45 FLTAVA----YKTAFVADIYNNN---------------------------------------VDLSAMNPKLRVPKRFIN 81 (663)
Q Consensus 45 vi~i~G----GKTtla~~v~~~~---------------------------------------~~~~~~~~~~~~~~~F~~ 81 (663)
++||+| ||||+|..+..-. .+..+++|--.|.++..-
T Consensus 37 ~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E 116 (539)
T COG1123 37 ILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIRE 116 (539)
T ss_pred EEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHHHHHhccccEEEEecCchhhcCchhhHHHHHHH
Q ss_pred eccCCCcceEeCC-CcchhHHHHHHHHHHHhCCCCCcch---hhhh-HhhHHHHHHHHhhcCCcEEEEEeCCCC--Chhh
Q 037018 82 KAFPVAFPVDVNC-ACNAQLNHILDDIIKSVMPPSRVNV---IISE-DYKLKTIILRDYLTNKKDFIVLDDVFD--DREI 154 (663)
Q Consensus 82 ~~~~~~~~v~vs~-~~~~~~~~l~~~i~~~l~~~~~~~~---~~~~-~~~l~~~~l~~~L~~kr~LlVLDdv~~--~~~~ 154 (663)
.++ .+-.. ... ..+-..+++++++.+..... ..+. ....+.-.+--.|..+.-|||.|.--. |...
T Consensus 117 ~~~-----~h~~~~~~e--a~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~ 189 (539)
T COG1123 117 ALR-----LHGKGSRAE--ARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTT 189 (539)
T ss_pred HHH-----HhccccHHH--HHHHHHHHHHHcCCCChhhhccCCcccCchHHHHHHHHHHHhCCCCEEEECCCccccCHHH
Q ss_pred HHHHHhhCC--CCCCCceEEEEEeC
Q 037018 155 WNDLEKFLP--DNQNGSRVLILVTD 177 (663)
Q Consensus 155 ~~~l~~~~~--~~~~gskIiiT~r~ 177 (663)
..+|...+. ....|--+|++|-+
T Consensus 190 q~qIL~llk~l~~e~g~a~l~ITHD 214 (539)
T COG1123 190 QAQILDLLKDLQRELGMAVLFITHD 214 (539)
T ss_pred HHHHHHHHHHHHHHcCcEEEEEcCC
No 435
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=67.73 E-value=14 Score=42.83 Aligned_cols=49 Identities=16% Similarity=0.171 Sum_probs=30.4
Q ss_pred HHHHHhhcCCcEEEEEeCCCC--ChhhHHHHHhhCCCCCCCceEEEEEeCC
Q 037018 130 IILRDYLTNKKDFIVLDDVFD--DREIWNDLEKFLPDNQNGSRVLILVTDP 178 (663)
Q Consensus 130 ~~l~~~L~~kr~LlVLDdv~~--~~~~~~~l~~~~~~~~~gskIiiT~r~~ 178 (663)
-.+-+.+-.++=+++||+.-+ |.+.-+.+...+........|+||+|..
T Consensus 620 ialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~~~~T~IiitHr~~ 670 (708)
T TIGR01193 620 IALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNLQDKTIIFVAHRLS 670 (708)
T ss_pred HHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCEEEEEecchH
Confidence 345566666777789999987 5555455544443323356788887743
No 436
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=67.61 E-value=31 Score=38.16 Aligned_cols=45 Identities=27% Similarity=0.433 Sum_probs=33.7
Q ss_pred HHHHHHhhcCCcEEEEEeCCCC--ChhhHHHHHhhCCCCCCCceEEEE
Q 037018 129 TIILRDYLTNKKDFIVLDDVFD--DREIWNDLEKFLPDNQNGSRVLIL 174 (663)
Q Consensus 129 ~~~l~~~L~~kr~LlVLDdv~~--~~~~~~~l~~~~~~~~~gskIiiT 174 (663)
.-.+-..+..+.=++|||.--+ |.+..+.+..++.... |+-|+|+
T Consensus 447 Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f~-Gtvl~VS 493 (530)
T COG0488 447 RLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDFE-GTVLLVS 493 (530)
T ss_pred HHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhCC-CeEEEEe
Confidence 3445556667788999999887 6777777777776655 8888888
No 437
>PRK00131 aroK shikimate kinase; Reviewed
Probab=67.51 E-value=2.9 Score=38.44 Aligned_cols=19 Identities=5% Similarity=0.013 Sum_probs=15.2
Q ss_pred eEEEEEec-chhhHHHHHhc
Q 037018 43 LQFLTAVA-YKTAFVADIYN 61 (663)
Q Consensus 43 ~~vi~i~G-GKTtla~~v~~ 61 (663)
+-++|..| ||||+|+.+..
T Consensus 7 i~l~G~~GsGKstla~~La~ 26 (175)
T PRK00131 7 IVLIGFMGAGKSTIGRLLAK 26 (175)
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 45555566 99999999999
No 438
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=67.50 E-value=28 Score=36.58 Aligned_cols=19 Identities=16% Similarity=0.029 Sum_probs=16.5
Q ss_pred eEEEEEec----chhhHHHHHhc
Q 037018 43 LQFLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 43 ~~vi~i~G----GKTtla~~v~~ 61 (663)
-.++.++| ||||++.++..
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~ 159 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAA 159 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46788888 99999999987
No 439
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=67.46 E-value=9.5 Score=39.05 Aligned_cols=35 Identities=14% Similarity=0.017 Sum_probs=26.6
Q ss_pred hhcHHHHHHHHhcCCCCceEEEEEec-chhhHHHHHhc
Q 037018 25 KVKVKAVLVWLFMLDSMWLQFLTAVA-YKTAFVADIYN 61 (663)
Q Consensus 25 ~~~~~~i~~~L~~~~~~~~~vi~i~G-GKTtla~~v~~ 61 (663)
.+....+...+.... .+-+.|-.| ||||+|+.+..
T Consensus 51 ~~~~~~vl~~l~~~~--~ilL~G~pGtGKTtla~~lA~ 86 (327)
T TIGR01650 51 KATTKAICAGFAYDR--RVMVQGYHGTGKSTHIEQIAA 86 (327)
T ss_pred HHHHHHHHHHHhcCC--cEEEEeCCCChHHHHHHHHHH
Confidence 345566777775543 588888888 99999999998
No 440
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=67.42 E-value=4.1 Score=35.78 Aligned_cols=19 Identities=11% Similarity=0.106 Sum_probs=15.4
Q ss_pred EEEEec----chhhHHHHHhcCC
Q 037018 45 FLTAVA----YKTAFVADIYNNN 63 (663)
Q Consensus 45 vi~i~G----GKTtla~~v~~~~ 63 (663)
+++|+| |||||.+.+....
T Consensus 13 ~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 13 IVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSS
T ss_pred EEEEEccCCCccccceeeecccc
Confidence 556666 9999999999855
No 441
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=67.35 E-value=5.1 Score=41.18 Aligned_cols=43 Identities=5% Similarity=-0.007 Sum_probs=35.3
Q ss_pred ccccchhhcHHHHHHHHhcCCC---CceEEEEEec----chhhHHHHHhc
Q 037018 19 CSSKTVKVKVKAVLVWLFMLDS---MWLQFLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 19 ~~~~G~~~~~~~i~~~L~~~~~---~~~~vi~i~G----GKTtla~~v~~ 61 (663)
..++|+++..+++++.+..... .+-+|+-..| ||||||+.+.+
T Consensus 61 ~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~ 110 (358)
T PF08298_consen 61 DEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKR 110 (358)
T ss_pred ccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999998865322 3567887877 99999999988
No 442
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=67.25 E-value=32 Score=40.16 Aligned_cols=113 Identities=11% Similarity=0.045 Sum_probs=67.9
Q ss_pred cccchhhcHHHHHHHHhcCCC---C--ceEEEEEec----chhhHHHHHhcCCCccccCCCCccccCCceeeccCCCcce
Q 037018 20 SSKTVKVKVKAVLVWLFMLDS---M--WLQFLTAVA----YKTAFVADIYNNNVDLSAMNPKLRVPKRFINKAFPVAFPV 90 (663)
Q Consensus 20 ~~~G~~~~~~~i~~~L~~~~~---~--~~~vi~i~G----GKTtla~~v~~~~~~~~~~~~~~~~~~~F~~~~~~~~~~v 90 (663)
.++|-++.+..|-+.+..... . +.-..-+.| |||-||+++.. -+.+-.+.. |
T Consensus 563 ~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~------------~~Fgse~~~-------I 623 (898)
T KOG1051|consen 563 RVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAE------------YVFGSEENF-------I 623 (898)
T ss_pred hccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHH------------HHcCCccce-------E
Confidence 567778888888777755321 1 344455566 99999999887 443333333 3
Q ss_pred EeCCCcchhHHHHHHHHHHHhCCCCCcchhhhhHhhHHHHHHHHhhcCCcE-EEEEeCCCC-ChhhHHHHHhhCCC
Q 037018 91 DVNCACNAQLNHILDDIIKSVMPPSRVNVIISEDYKLKTIILRDYLTNKKD-FIVLDDVFD-DREIWNDLEKFLPD 164 (663)
Q Consensus 91 ~vs~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~~l~~~L~~kr~-LlVLDdv~~-~~~~~~~l~~~~~~ 164 (663)
.+ | ..+.++ +.+-++.+...-+ .+. ...+.+.++++.| .|.+|||.. +......+...+..
T Consensus 624 ri----D--mse~~e-vskligsp~gyvG-----~e~-gg~LteavrrrP~sVVLfdeIEkAh~~v~n~llq~lD~ 686 (898)
T KOG1051|consen 624 RL----D--MSEFQE-VSKLIGSPPGYVG-----KEE-GGQLTEAVKRRPYSVVLFEEIEKAHPDVLNILLQLLDR 686 (898)
T ss_pred Ee----c--hhhhhh-hhhccCCCccccc-----chh-HHHHHHHHhcCCceEEEEechhhcCHHHHHHHHHHHhc
Confidence 32 2 445555 4444454432211 122 4567788888888 566799987 66677766666653
No 443
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=67.17 E-value=5.6 Score=41.27 Aligned_cols=39 Identities=26% Similarity=0.295 Sum_probs=28.4
Q ss_pred HHHHHHhhcCCcEEEEEeCCCCChhhHHHHHhhCCCCCCCc
Q 037018 129 TIILRDYLTNKKDFIVLDDVFDDREIWNDLEKFLPDNQNGS 169 (663)
Q Consensus 129 ~~~l~~~L~~kr~LlVLDdv~~~~~~~~~l~~~~~~~~~gs 169 (663)
...++..|+...=-||+..|.+ .+.++. ..+...++.|+
T Consensus 243 ~~ll~~aLR~~PD~IivGEiRg-~Ea~~~-l~a~~tGh~G~ 281 (340)
T TIGR03819 243 TDLVRQALRMRPDRIVVGEVRG-AEVVDL-LAALNTGHDGG 281 (340)
T ss_pred HHHHHHHhccCCCeEEEeCcCc-HHHHHH-HHHHHcCCCce
Confidence 5567888888888899999999 877765 44454455454
No 444
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=67.11 E-value=32 Score=35.29 Aligned_cols=42 Identities=2% Similarity=-0.183 Sum_probs=31.0
Q ss_pred cccchhhcHHHHHHHHhcCCC-CceEEEEEec-chhhHHHHHhc
Q 037018 20 SSKTVKVKVKAVLVWLFMLDS-MWLQFLTAVA-YKTAFVADIYN 61 (663)
Q Consensus 20 ~~~G~~~~~~~i~~~L~~~~~-~~~~vi~i~G-GKTtla~~v~~ 61 (663)
.++|-+..++.+.+.+..+.- +..-+.|--| ||+|+|.++.+
T Consensus 5 ~iiGq~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~ 48 (314)
T PRK07399 5 NLIGQPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIE 48 (314)
T ss_pred HhCCHHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 589999999999998877643 2344445555 99998877655
No 445
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=67.08 E-value=18 Score=41.46 Aligned_cols=58 Identities=19% Similarity=0.137 Sum_probs=36.1
Q ss_pred HHHHHhhcCCcEEEEEeCCCC--ChhhHHHHHhhCC-CCCCCceEEEEEeCCCCC---ceEecc
Q 037018 130 IILRDYLTNKKDFIVLDDVFD--DREIWNDLEKFLP-DNQNGSRVLILVTDPFLL---TSFELE 187 (663)
Q Consensus 130 ~~l~~~L~~kr~LlVLDdv~~--~~~~~~~l~~~~~-~~~~gskIiiT~r~~~~~---~~~~l~ 187 (663)
-.+-+.+-.|.=.++||.--+ |.+.=..+...+. .......|+||+|..... +++-|+
T Consensus 618 lalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~ti~~adrIiVl~ 681 (709)
T COG2274 618 LALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTIRSADRIIVLD 681 (709)
T ss_pred HHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccchHhhhccEEEEcc
Confidence 445677777777889999876 5444444444443 334478899998865431 444444
No 446
>COG0802 Predicted ATPase or kinase [General function prediction only]
Probab=66.91 E-value=6.7 Score=34.94 Aligned_cols=37 Identities=16% Similarity=-0.128 Sum_probs=24.5
Q ss_pred hcHHHHHHHHhcCCCCceEEEEEec----chhhHHHHHhcCC
Q 037018 26 VKVKAVLVWLFMLDSMWLQFLTAVA----YKTAFVADIYNNN 63 (663)
Q Consensus 26 ~~~~~i~~~L~~~~~~~~~vi~i~G----GKTtla~~v~~~~ 63 (663)
++..++-+.|...-. .-.||...| |||||+|.+...-
T Consensus 9 ~~t~~lg~~l~~~l~-~g~Vv~L~GdLGAGKTtf~rgi~~~L 49 (149)
T COG0802 9 EATLALGERLAEALK-AGDVVLLSGDLGAGKTTLVRGIAKGL 49 (149)
T ss_pred HHHHHHHHHHHhhCC-CCCEEEEEcCCcCChHHHHHHHHHHc
Confidence 344455555544332 346788888 9999999998843
No 447
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=66.87 E-value=21 Score=36.63 Aligned_cols=60 Identities=13% Similarity=0.041 Sum_probs=36.7
Q ss_pred HHHHHHHhcCCCCceEEEEEec----chhhHHHHHhcCCCccccCCCCccccCC----ceeeccCCCcceEeCCCcchhH
Q 037018 29 KAVLVWLFMLDSMWLQFLTAVA----YKTAFVADIYNNNVDLSAMNPKLRVPKR----FINKAFPVAFPVDVNCACNAQL 100 (663)
Q Consensus 29 ~~i~~~L~~~~~~~~~vi~i~G----GKTtla~~v~~~~~~~~~~~~~~~~~~~----F~~~~~~~~~~v~vs~~~~~~~ 100 (663)
..+-.+|.. .-+.-.|+-|+| ||||++.+++-+. ..... =...+| |.....|+ .
T Consensus 82 ~~lD~~l~G-Gi~~g~i~ei~G~~g~GKT~l~~~~~~~~----------~~~~~~g~~~~~~~y-----i~te~~f~--~ 143 (310)
T TIGR02236 82 KELDELLGG-GIETQAITEVFGEFGSGKTQICHQLAVNV----------QLPEEKGGLGGKAVY-----IDTENTFR--P 143 (310)
T ss_pred HHHHHHhcC-CCCCCeEEEEECCCCCCHHHHHHHHHHHh----------cCCcccCCCcceEEE-----EECCCCCC--H
Confidence 334444443 222456777777 9999999987643 22110 126788 88888778 7
Q ss_pred HHHHHH
Q 037018 101 NHILDD 106 (663)
Q Consensus 101 ~~l~~~ 106 (663)
.++.+.
T Consensus 144 ~rl~~~ 149 (310)
T TIGR02236 144 ERIMQM 149 (310)
T ss_pred HHHHHH
Confidence 665543
No 448
>TIGR03172 probable selenium-dependent hydroxylase accessory protein YqeC. This uncharacterized protein family includes YqeC from Escherichia coli. A phylogenetic profiling analysis shows correlation with SelD, the selenium donor protein, even in species where SelD contributes to neither selenocysteine nor selenouridine biosynthesis. Instead, this family, and families TIGR03309 and TIGR03310 appear to mark selenium-dependent molybdenum hydroxylase maturation systems.
Probab=66.79 E-value=3.3 Score=40.19 Aligned_cols=18 Identities=17% Similarity=0.021 Sum_probs=15.8
Q ss_pred EEEEec--chhhHHHHHhcC
Q 037018 45 FLTAVA--YKTAFVADIYNN 62 (663)
Q Consensus 45 vi~i~G--GKTtla~~v~~~ 62 (663)
||+|+| ||||++.++...
T Consensus 1 vi~~vG~gGKTtl~~~l~~~ 20 (232)
T TIGR03172 1 VIAFVGAGGKTSTMFWLAAE 20 (232)
T ss_pred CEEEEcCCcHHHHHHHHHHH
Confidence 588888 999999999883
No 449
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=66.76 E-value=3.1 Score=38.52 Aligned_cols=20 Identities=5% Similarity=0.041 Sum_probs=15.3
Q ss_pred ceEEEEEec-chhhHHHHHhc
Q 037018 42 WLQFLTAVA-YKTAFVADIYN 61 (663)
Q Consensus 42 ~~~vi~i~G-GKTtla~~v~~ 61 (663)
.+-+||..| ||||+|+.+.+
T Consensus 6 ~I~liG~~GaGKStl~~~La~ 26 (172)
T PRK05057 6 NIFLVGPMGAGKSTIGRQLAQ 26 (172)
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 344555555 99999999998
No 450
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=66.62 E-value=32 Score=40.00 Aligned_cols=44 Identities=5% Similarity=-0.192 Sum_probs=28.3
Q ss_pred ccccchhhcHHHHHHHHhcC----------CCCceEEEEEec----chhhHHHHHhcC
Q 037018 19 CSSKTVKVKVKAVLVWLFML----------DSMWLQFLTAVA----YKTAFVADIYNN 62 (663)
Q Consensus 19 ~~~~G~~~~~~~i~~~L~~~----------~~~~~~vi~i~G----GKTtla~~v~~~ 62 (663)
..+.|.+..++++.+.+.-. +....+-|-++| |||++|+++.+.
T Consensus 453 ~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e 510 (733)
T TIGR01243 453 SDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATE 510 (733)
T ss_pred hhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh
Confidence 35678888888777765410 001122345566 999999999993
No 451
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=66.50 E-value=46 Score=30.34 Aligned_cols=41 Identities=22% Similarity=0.354 Sum_probs=31.1
Q ss_pred CcEEEEEeCCCC-ChhhHHHHHhhCCCCCCCceEEEEEeCCC
Q 037018 139 KKDFIVLDDVFD-DREIWNDLEKFLPDNQNGSRVLILVTDPF 179 (663)
Q Consensus 139 kr~LlVLDdv~~-~~~~~~~l~~~~~~~~~gskIiiT~r~~~ 179 (663)
++=.+|+||+.. ..+.++.++..+-.-..+.++|++|.+..
T Consensus 102 ~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~~~ 143 (162)
T PF13177_consen 102 KYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNNPS 143 (162)
T ss_dssp SSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-GG
T ss_pred CceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECChH
Confidence 344678999987 68889999988777667889999987654
No 452
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=66.34 E-value=16 Score=37.17 Aligned_cols=46 Identities=17% Similarity=0.335 Sum_probs=26.7
Q ss_pred HHHHhhcCCcEEEEEeCCCC--ChhhHHHHHhhCCC-CCCC-ceEEEEEe
Q 037018 131 ILRDYLTNKKDFIVLDDVFD--DREIWNDLEKFLPD-NQNG-SRVLILVT 176 (663)
Q Consensus 131 ~l~~~L~~kr~LlVLDdv~~--~~~~~~~l~~~~~~-~~~g-skIiiT~r 176 (663)
.+-..|-++.=+++||.--+ |+..-..+...+.. ...| .-|++||.
T Consensus 146 ~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH 195 (293)
T COG1131 146 SIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTH 195 (293)
T ss_pred HHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCC
Confidence 34566777888999999876 54433333333331 1223 56777755
No 453
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=66.16 E-value=5.1 Score=37.59 Aligned_cols=22 Identities=9% Similarity=0.211 Sum_probs=18.6
Q ss_pred ceEEEEEec----chhhHHHHHhcCC
Q 037018 42 WLQFLTAVA----YKTAFVADIYNNN 63 (663)
Q Consensus 42 ~~~vi~i~G----GKTtla~~v~~~~ 63 (663)
+.+.|+|.| |||||+.++-...
T Consensus 2 ~~~~I~i~G~~~sGKTTL~~~L~~~~ 27 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKTTLLGALLGKA 27 (188)
T ss_dssp TEEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEEEEECCCCCCcEeechhhhhhc
Confidence 578899999 9999999987633
No 454
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=66.13 E-value=17 Score=41.94 Aligned_cols=48 Identities=17% Similarity=0.170 Sum_probs=29.9
Q ss_pred HHHHHhhcCCcEEEEEeCCCC--ChhhHHHHHhhCCCC-CCCceEEEEEeC
Q 037018 130 IILRDYLTNKKDFIVLDDVFD--DREIWNDLEKFLPDN-QNGSRVLILVTD 177 (663)
Q Consensus 130 ~~l~~~L~~kr~LlVLDdv~~--~~~~~~~l~~~~~~~-~~gskIiiT~r~ 177 (663)
-.+-+.+-.+.=+++||+.-+ |.+.-+.+...+... .....|+||+|-
T Consensus 610 lalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~~~T~iiItHrl 660 (694)
T TIGR03375 610 VALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRT 660 (694)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEecCH
Confidence 334455556667789999877 666555565555432 335677777663
No 455
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=66.07 E-value=41 Score=36.14 Aligned_cols=19 Identities=16% Similarity=0.051 Sum_probs=15.2
Q ss_pred eEEEEEec----chhhHHHHHhc
Q 037018 43 LQFLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 43 ~~vi~i~G----GKTtla~~v~~ 61 (663)
..++.++| ||||.|.++..
T Consensus 99 p~vi~~vG~~GsGKTTtaakLA~ 121 (428)
T TIGR00959 99 PTVILMVGLQGSGKTTTCGKLAY 121 (428)
T ss_pred CEEEEEECCCCCcHHHHHHHHHH
Confidence 56788888 99999777765
No 456
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=66.02 E-value=11 Score=37.44 Aligned_cols=17 Identities=6% Similarity=0.008 Sum_probs=14.5
Q ss_pred EEEEec----chhhHHHHHhc
Q 037018 45 FLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 45 vi~i~G----GKTtla~~v~~ 61 (663)
||||.| ||||+|+++.+
T Consensus 1 IIgItG~SGSGKTTv~~~l~~ 21 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEH 21 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 477777 99999998876
No 457
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=65.89 E-value=3.8 Score=41.05 Aligned_cols=43 Identities=19% Similarity=0.287 Sum_probs=27.6
Q ss_pred HHHHHHhhcCCcEEEEEeCCCCChhhHHHHHhhCCCCCCCceE-EEEEe
Q 037018 129 TIILRDYLTNKKDFIVLDDVFDDREIWNDLEKFLPDNQNGSRV-LILVT 176 (663)
Q Consensus 129 ~~~l~~~L~~kr~LlVLDdv~~~~~~~~~l~~~~~~~~~gskI-iiT~r 176 (663)
...++..|+...=.+|++.+.+ .+.+..+... ..|-++ +-|..
T Consensus 187 ~~~l~~~LR~~pD~iiigEiR~-~e~~~~~~a~----~tGh~~~~tT~H 230 (270)
T PF00437_consen 187 EDLLKSALRQDPDVIIIGEIRD-PEAAEAIQAA----NTGHLGSLTTLH 230 (270)
T ss_dssp HHHHHHHTTS--SEEEESCE-S-CHHHHHHHHH----HTT-EEEEEEEE
T ss_pred HHHHHHHhcCCCCcccccccCC-HhHHHHHHhh----ccCCceeeeeee
Confidence 5667888888888999999999 7777774432 247777 44433
No 458
>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]
Probab=65.77 E-value=9.8 Score=33.82 Aligned_cols=16 Identities=6% Similarity=0.038 Sum_probs=14.6
Q ss_pred EEEec-chhhHHHHHhc
Q 037018 46 LTAVA-YKTAFVADIYN 61 (663)
Q Consensus 46 i~i~G-GKTtla~~v~~ 61 (663)
+|+.| ||||+++++..
T Consensus 1 MGVsG~GKStvg~~lA~ 17 (161)
T COG3265 1 MGVSGSGKSTVGSALAE 17 (161)
T ss_pred CCCCccCHHHHHHHHHH
Confidence 47889 99999999999
No 459
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=65.68 E-value=10 Score=43.27 Aligned_cols=45 Identities=7% Similarity=-0.043 Sum_probs=30.9
Q ss_pred ccccchhhcHHHHHHHHhcCCC--CceEEEEEec-chhhHHHHHhcCC
Q 037018 19 CSSKTVKVKVKAVLVWLFMLDS--MWLQFLTAVA-YKTAFVADIYNNN 63 (663)
Q Consensus 19 ~~~~G~~~~~~~i~~~L~~~~~--~~~~vi~i~G-GKTtla~~v~~~~ 63 (663)
..++|....+.++.+.+..-.. ..+-+.|=.| |||++|++|.+..
T Consensus 325 ~~l~g~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~~A~~ih~~s 372 (638)
T PRK11388 325 DHMPQDSPQMRRLIHFGRQAAKSSFPVLLCGEEGVGKALLAQAIHNES 372 (638)
T ss_pred cceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCcCHHHHHHHHHHhC
Confidence 4588888888888777765322 1344444444 9999999999843
No 460
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=65.65 E-value=3.7 Score=36.49 Aligned_cols=17 Identities=6% Similarity=-0.003 Sum_probs=13.9
Q ss_pred EEEEec----chhhHHHHHhc
Q 037018 45 FLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 45 vi~i~G----GKTtla~~v~~ 61 (663)
||.|+| ||||+|+.+..
T Consensus 1 ~I~i~G~~GsGKst~a~~la~ 21 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAK 21 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 355666 99999999988
No 461
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=65.62 E-value=4.1 Score=42.94 Aligned_cols=20 Identities=20% Similarity=-0.069 Sum_probs=17.7
Q ss_pred ceEEEEEec----chhhHHHHHhc
Q 037018 42 WLQFLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 42 ~~~vi~i~G----GKTtla~~v~~ 61 (663)
+.-||||.| |||||++.+..
T Consensus 211 ~PlIIGIsG~qGSGKSTLa~~L~~ 234 (460)
T PLN03046 211 PPLVIGFSAPQGCGKTTLVFALDY 234 (460)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 457999999 99999999966
No 462
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=65.51 E-value=45 Score=35.68 Aligned_cols=38 Identities=11% Similarity=0.159 Sum_probs=27.7
Q ss_pred CCcEEEEEeCCCCChhhHHHHHhhCCCCCCCceEEEEEeC
Q 037018 138 NKKDFIVLDDVFDDREIWNDLEKFLPDNQNGSRVLILVTD 177 (663)
Q Consensus 138 ~kr~LlVLDdv~~~~~~~~~l~~~~~~~~~gskIiiT~r~ 177 (663)
.-+.+||||=-.. ..+.+++...+...+ -.++|+|--|
T Consensus 300 ~~~~~LVl~at~~-~~~~~~~~~~f~~~~-~~~~I~TKlD 337 (420)
T PRK14721 300 QVKHLLLLNATSS-GDTLDEVISAYQGHG-IHGCIITKVD 337 (420)
T ss_pred CceEEEEEcCCCC-HHHHHHHHHHhcCCC-CCEEEEEeee
Confidence 3567889988877 778888887776533 6678888433
No 463
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=65.50 E-value=3.5 Score=41.34 Aligned_cols=17 Identities=12% Similarity=0.284 Sum_probs=14.8
Q ss_pred EEEEec----chhhHHHHHhc
Q 037018 45 FLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 45 vi~i~G----GKTtla~~v~~ 61 (663)
+|||.| ||||+++.+..
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ 21 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTS 21 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 467777 99999999987
No 464
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=65.26 E-value=11 Score=35.77 Aligned_cols=20 Identities=20% Similarity=0.192 Sum_probs=16.0
Q ss_pred EEEEEec----chhhHHHHHhcCC
Q 037018 44 QFLTAVA----YKTAFVADIYNNN 63 (663)
Q Consensus 44 ~vi~i~G----GKTtla~~v~~~~ 63 (663)
+||.++| ||||.+-++....
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~ 25 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARL 25 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCchHhHHHHHHHHH
Confidence 5777888 9999999888733
No 465
>PRK13949 shikimate kinase; Provisional
Probab=65.05 E-value=3.5 Score=38.05 Aligned_cols=20 Identities=10% Similarity=0.084 Sum_probs=15.7
Q ss_pred eEEEEEec-chhhHHHHHhcC
Q 037018 43 LQFLTAVA-YKTAFVADIYNN 62 (663)
Q Consensus 43 ~~vi~i~G-GKTtla~~v~~~ 62 (663)
+-+||..| ||||+++.+.+.
T Consensus 4 I~liG~~GsGKstl~~~La~~ 24 (169)
T PRK13949 4 IFLVGYMGAGKTTLGKALARE 24 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 45556666 999999999983
No 466
>PRK02118 V-type ATP synthase subunit B; Provisional
Probab=64.94 E-value=34 Score=36.61 Aligned_cols=99 Identities=8% Similarity=0.030 Sum_probs=54.2
Q ss_pred CceEEEEEec-chhhHHHHHhcCCCccccCCCCccccCCceeeccCCCcceEeCCCcchhHHHHHHHHHHHhCCC-----
Q 037018 41 MWLQFLTAVA-YKTAFVADIYNNNVDLSAMNPKLRVPKRFINKAFPVAFPVDVNCACNAQLNHILDDIIKSVMPP----- 114 (663)
Q Consensus 41 ~~~~vi~i~G-GKTtla~~v~~~~~~~~~~~~~~~~~~~F~~~~~~~~~~v~vs~~~~~~~~~l~~~i~~~l~~~----- 114 (663)
++..+.|-.| |||+|+..|.+.. +. +..++ +-+.....+ ..++.+++...=..+
T Consensus 141 QkigIF~gaGvgk~~L~~~ia~~~----------~~----~v~Vf-----a~iGeR~rE-~~ef~~~~~~~~~l~rtvlv 200 (436)
T PRK02118 141 QKIPIFSVSGEPYNALLARIALQA----------EA----DIIIL-----GGMGLTFDD-YLFFKDTFENAGALDRTVMF 200 (436)
T ss_pred CEEEEEeCCCCCHHHHHHHHHHhh----------CC----CeEEE-----EEeccchhH-HHHHHHHHhhCCCcceEEEE
Confidence 4555666666 9999999998844 22 45677 777766541 445555554432111
Q ss_pred ---CCcchhhhh-HhhHHHHHHHHhh---cCCcEEEEEeCCCCChhhHHHHHh
Q 037018 115 ---SRVNVIISE-DYKLKTIILRDYL---TNKKDFIVLDDVFDDREIWNDLEK 160 (663)
Q Consensus 115 ---~~~~~~~~~-~~~l~~~~l~~~L---~~kr~LlVLDdv~~~~~~~~~l~~ 160 (663)
.+.+...-. .... +--+-+++ .++.+|+++||+-.-.+...++..
T Consensus 201 ~~~adep~~~R~~~~~~-AltiAEyfrd~g~~~VLli~DdlTr~a~A~REIsl 252 (436)
T PRK02118 201 IHTASDPPVECLLVPDM-ALAVAEKFALEGKKKVLVLLTDMTNFADALKEISI 252 (436)
T ss_pred EECCCCCHHHHHHHHHH-HHHHHHHHHhcCCCCEEEeccCchHHHHHHHHHHH
Confidence 111111111 1222 22333444 348999999999873444444443
No 467
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=64.83 E-value=4.5 Score=40.55 Aligned_cols=18 Identities=28% Similarity=0.399 Sum_probs=16.3
Q ss_pred EEEEEec----chhhHHHHHhc
Q 037018 44 QFLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 44 ~vi~i~G----GKTtla~~v~~ 61 (663)
++|+|+| |||||+.++..
T Consensus 2 ~~i~i~G~~gSGKTTLi~~Li~ 23 (274)
T PRK14493 2 KVLSIVGYKATGKTTLVERLVD 23 (274)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4788888 99999999999
No 468
>PRK00889 adenylylsulfate kinase; Provisional
Probab=64.80 E-value=5 Score=37.11 Aligned_cols=18 Identities=11% Similarity=-0.056 Sum_probs=15.2
Q ss_pred EEEEEec----chhhHHHHHhc
Q 037018 44 QFLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 44 ~vi~i~G----GKTtla~~v~~ 61 (663)
.+|.+.| ||||+|+++..
T Consensus 5 ~~i~~~G~~GsGKST~a~~la~ 26 (175)
T PRK00889 5 VTVWFTGLSGAGKTTIARALAE 26 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4666666 99999999998
No 469
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=64.51 E-value=2.6 Score=40.68 Aligned_cols=20 Identities=10% Similarity=0.124 Sum_probs=16.5
Q ss_pred eEEEEEec----chhhHHHHHhcC
Q 037018 43 LQFLTAVA----YKTAFVADIYNN 62 (663)
Q Consensus 43 ~~vi~i~G----GKTtla~~v~~~ 62 (663)
-+++.|.| ||||+.+.+.-.
T Consensus 30 ~~~~~itG~n~~gKs~~l~~i~~~ 53 (218)
T cd03286 30 PRILVLTGPNMGGKSTLLRTVCLA 53 (218)
T ss_pred CcEEEEECCCCCchHHHHHHHHHH
Confidence 46788888 999999988774
No 470
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=64.50 E-value=5.2 Score=35.39 Aligned_cols=17 Identities=6% Similarity=0.200 Sum_probs=14.2
Q ss_pred EEEec----chhhHHHHHhcC
Q 037018 46 LTAVA----YKTAFVADIYNN 62 (663)
Q Consensus 46 i~i~G----GKTtla~~v~~~ 62 (663)
|+|+| |||||++.+...
T Consensus 2 i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 55666 999999999984
No 471
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=64.49 E-value=6.4 Score=41.44 Aligned_cols=20 Identities=20% Similarity=0.179 Sum_probs=18.4
Q ss_pred ceEEEEEec----chhhHHHHHhc
Q 037018 42 WLQFLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 42 ~~~vi~i~G----GKTtla~~v~~ 61 (663)
..++|+|+| |||||++++..
T Consensus 204 ~~~~~~~~g~~~~GKtt~~~~l~~ 227 (366)
T PRK14489 204 APPLLGVVGYSGTGKTTLLEKLIP 227 (366)
T ss_pred CccEEEEecCCCCCHHHHHHHHHH
Confidence 577999999 99999999998
No 472
>PLN03232 ABC transporter C family member; Provisional
Probab=64.49 E-value=21 Score=45.20 Aligned_cols=58 Identities=17% Similarity=0.268 Sum_probs=31.6
Q ss_pred HHHHHhhcCCcEEEEEeCCCC--ChhhHHHHHh-hCCC-CCCCceEEEEEeCCCCC---ceEecc
Q 037018 130 IILRDYLTNKKDFIVLDDVFD--DREIWNDLEK-FLPD-NQNGSRVLILVTDPFLL---TSFELE 187 (663)
Q Consensus 130 ~~l~~~L~~kr~LlVLDdv~~--~~~~~~~l~~-~~~~-~~~gskIiiT~r~~~~~---~~~~l~ 187 (663)
-.+-+.+-.+.=+++|||.-+ |.+.=..+.. .+.. .....+|+||++-.... +++.|+
T Consensus 749 IaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l~~kT~IlvTH~~~~l~~aD~Ii~L~ 813 (1495)
T PLN03232 749 VSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHFLPLMDRIILVS 813 (1495)
T ss_pred HHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhcCCEEEEEECChhhHHhCCEEEEEe
Confidence 334455555666778999987 5333333322 1221 13468888887632210 566665
No 473
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=64.26 E-value=5 Score=34.11 Aligned_cols=18 Identities=11% Similarity=0.302 Sum_probs=14.7
Q ss_pred EEEec----chhhHHHHHhcCC
Q 037018 46 LTAVA----YKTAFVADIYNNN 63 (663)
Q Consensus 46 i~i~G----GKTtla~~v~~~~ 63 (663)
|.|+| |||||.+.+.+..
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~ 23 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGE 23 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 45556 9999999999866
No 474
>PRK00279 adk adenylate kinase; Reviewed
Probab=64.13 E-value=15 Score=35.40 Aligned_cols=20 Identities=20% Similarity=0.016 Sum_probs=14.4
Q ss_pred eEEEEEec-chhhHHHHHhcC
Q 037018 43 LQFLTAVA-YKTAFVADIYNN 62 (663)
Q Consensus 43 ~~vi~i~G-GKTtla~~v~~~ 62 (663)
+-|+|-.| ||||+|+.+...
T Consensus 3 I~v~G~pGsGKsT~a~~la~~ 23 (215)
T PRK00279 3 LILLGPPGAGKGTQAKFIAEK 23 (215)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 33444455 999999998873
No 475
>PLN02924 thymidylate kinase
Probab=64.04 E-value=24 Score=34.08 Aligned_cols=22 Identities=9% Similarity=-0.086 Sum_probs=17.8
Q ss_pred ceEEEEEec----chhhHHHHHhcCC
Q 037018 42 WLQFLTAVA----YKTAFVADIYNNN 63 (663)
Q Consensus 42 ~~~vi~i~G----GKTtla~~v~~~~ 63 (663)
.-..|.|-| ||||+|+.+.+..
T Consensus 15 ~g~~IviEGiDGsGKsTq~~~L~~~l 40 (220)
T PLN02924 15 RGALIVLEGLDRSGKSTQCAKLVSFL 40 (220)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 345788888 9999999999944
No 476
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=63.91 E-value=9 Score=38.53 Aligned_cols=20 Identities=20% Similarity=0.132 Sum_probs=18.4
Q ss_pred ceEEEEEec----chhhHHHHHhc
Q 037018 42 WLQFLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 42 ~~~vi~i~G----GKTtla~~v~~ 61 (663)
+..+|+|.| |||||+.++.+
T Consensus 103 ~~~~v~l~G~pGsGKTTLl~~l~~ 126 (290)
T PRK10463 103 KQLVLNLVSSPGSGKTTLLTETLM 126 (290)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 688899988 99999999999
No 477
>PRK13409 putative ATPase RIL; Provisional
Probab=63.86 E-value=14 Score=41.64 Aligned_cols=116 Identities=16% Similarity=0.132 Sum_probs=0.0
Q ss_pred EEEEec----chhhHHHHHhcCCCccccCCCCcc--------------ccCCceeeccCCCcceEeCCCcchhH------
Q 037018 45 FLTAVA----YKTAFVADIYNNNVDLSAMNPKLR--------------VPKRFINKAFPVAFPVDVNCACNAQL------ 100 (663)
Q Consensus 45 vi~i~G----GKTtla~~v~~~~~~~~~~~~~~~--------------~~~~F~~~~~~~~~~v~vs~~~~~~~------ 100 (663)
+++|+| |||||++.+.... + +...+..... .+|..... .
T Consensus 367 iv~l~G~NGsGKSTLlk~L~Gl~----------~p~~G~I~~~~~i~y~~Q~~~~~~~-----~tv~e~l~--~~~~~~~ 429 (590)
T PRK13409 367 VIGIVGPNGIGKTTFAKLLAGVL----------KPDEGEVDPELKISYKPQYIKPDYD-----GTVEDLLR--SITDDLG 429 (590)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC----------CCCceEEEEeeeEEEecccccCCCC-----CcHHHHHH--HHhhhcC
Q ss_pred -HHHHHHHHHHhCCCCCcch-hhhh-HhhHHHHHHHHhhcCCcEEEEEeCCCC--ChhhHHHHHhhCCCCCC--CceEEE
Q 037018 101 -NHILDDIIKSVMPPSRVNV-IISE-DYKLKTIILRDYLTNKKDFIVLDDVFD--DREIWNDLEKFLPDNQN--GSRVLI 173 (663)
Q Consensus 101 -~~l~~~i~~~l~~~~~~~~-~~~~-~~~l~~~~l~~~L~~kr~LlVLDdv~~--~~~~~~~l~~~~~~~~~--gskIii 173 (663)
....+++++.++....... +.+. ..+.+.-.+-..|..+.=+++||+--. |...-..+...+..... |.-||+
T Consensus 430 ~~~~~~~~L~~l~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvii 509 (590)
T PRK13409 430 SSYYKSEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALV 509 (590)
T ss_pred hHHHHHHHHHHCCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEE
Q ss_pred EEeC
Q 037018 174 LVTD 177 (663)
Q Consensus 174 T~r~ 177 (663)
+|.+
T Consensus 510 vsHD 513 (590)
T PRK13409 510 VDHD 513 (590)
T ss_pred EeCC
No 478
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=63.70 E-value=2.4 Score=38.83 Aligned_cols=16 Identities=13% Similarity=0.221 Sum_probs=14.0
Q ss_pred EEEec-chhhHHHHHhc
Q 037018 46 LTAVA-YKTAFVADIYN 61 (663)
Q Consensus 46 i~i~G-GKTtla~~v~~ 61 (663)
+|..| ||||+|+.+.+
T Consensus 1 ~G~sGsGKSTla~~la~ 17 (163)
T PRK11545 1 MGVSGSGKSAVASEVAH 17 (163)
T ss_pred CCCCCCcHHHHHHHHHH
Confidence 46678 99999999988
No 479
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=63.48 E-value=19 Score=39.09 Aligned_cols=149 Identities=15% Similarity=0.058 Sum_probs=74.0
Q ss_pred ccchhhcHHHHHHHHhcCCCCceEEEEEec----chhhHHHHHhcCCCccccCCCCccc-c-CCce--------eeccCC
Q 037018 21 SKTVKVKVKAVLVWLFMLDSMWLQFLTAVA----YKTAFVADIYNNNVDLSAMNPKLRV-P-KRFI--------NKAFPV 86 (663)
Q Consensus 21 ~~G~~~~~~~i~~~L~~~~~~~~~vi~i~G----GKTtla~~v~~~~~~~~~~~~~~~~-~-~~F~--------~~~~~~ 86 (663)
-+|.+..---..++.+...- =..|++|| ||+||.+.+|-+..|-.++-..... + .+|. ...|..
T Consensus 396 ~F~y~~~~~iy~~l~fgid~--~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~~~~~y~Qh~~e~ldl~~s~l 473 (614)
T KOG0927|consen 396 SFGYSDNPMIYKKLNFGIDL--DSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHNKLPRYNQHLAEQLDLDKSSL 473 (614)
T ss_pred ccCCCCcchhhhhhhcccCc--ccceeEecCCCCchhhhHHHHhhccccccccccccccccchhhhhhhHhhcCcchhHH
Confidence 45666555333333333221 12356666 9999999999987544333221110 0 0121 111211
Q ss_pred CcceEeCCCcchhHHHHHHHHHHHhCCCCCcch--hhhh-HhhHHHHHHHHhh-cCCcEEEEEeCCCC--ChhhHHHHHh
Q 037018 87 AFPVDVNCACNAQLNHILDDIIKSVMPPSRVNV--IISE-DYKLKTIILRDYL-TNKKDFIVLDDVFD--DREIWNDLEK 160 (663)
Q Consensus 87 ~~~v~vs~~~~~~~~~l~~~i~~~l~~~~~~~~--~~~~-~~~l~~~~l~~~L-~~kr~LlVLDdv~~--~~~~~~~l~~ 160 (663)
+++...-..-. ..+..+.|+...+...+... +.+. ..+- ...+..++ -...-+||||.--+ |.+..+.+..
T Consensus 474 e~~~~~~~~~~--~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr-~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~lae 550 (614)
T KOG0927|consen 474 EFMMPKFPDEK--ELEEMRSILGRFGLTGDAQVVPMSQLSDGQR-RRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAE 550 (614)
T ss_pred HHHHHhccccc--hHHHHHHHHHHhCCCccccccchhhcccccc-hhHHHHHHHhcCCcEEEecCCCcCCCchhHHHHHH
Confidence 11111111112 55666777777766432211 2222 2222 23333333 45778999999888 5566666666
Q ss_pred hCCCCCCCceEEEEE
Q 037018 161 FLPDNQNGSRVLILV 175 (663)
Q Consensus 161 ~~~~~~~gskIiiT~ 175 (663)
++.. .+|.-|+|+.
T Consensus 551 aiNe-~~Ggvv~vSH 564 (614)
T KOG0927|consen 551 AINE-FPGGVVLVSH 564 (614)
T ss_pred HHhc-cCCceeeeec
Confidence 6653 4477777653
No 480
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=63.44 E-value=5.2 Score=42.31 Aligned_cols=44 Identities=11% Similarity=-0.064 Sum_probs=32.5
Q ss_pred ccccchhhcHHHHHHHHhcC------------C--CCceEEEEEec-chhhHHHHHhcC
Q 037018 19 CSSKTVKVKVKAVLVWLFML------------D--SMWLQFLTAVA-YKTAFVADIYNN 62 (663)
Q Consensus 19 ~~~~G~~~~~~~i~~~L~~~------------~--~~~~~vi~i~G-GKTtla~~v~~~ 62 (663)
..++|.+..++.+..++... + ...+-++|-.| ||||+|+.+...
T Consensus 15 ~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~ 73 (443)
T PRK05201 15 KYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKL 73 (443)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999998888430 0 12455666666 999999999883
No 481
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=63.35 E-value=22 Score=32.78 Aligned_cols=80 Identities=13% Similarity=0.098 Sum_probs=40.7
Q ss_pred EEEEec-chhhHHHHHhcCCCccccCCCCccccCCceeeccCCCcceEeCCCcchhHHHHHHHHHHHhCCCCCcchhhhh
Q 037018 45 FLTAVA-YKTAFVADIYNNNVDLSAMNPKLRVPKRFINKAFPVAFPVDVNCACNAQLNHILDDIIKSVMPPSRVNVIISE 123 (663)
Q Consensus 45 vi~i~G-GKTtla~~v~~~~~~~~~~~~~~~~~~~F~~~~~~~~~~v~vs~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~ 123 (663)
|+|=.| ||||+|.++.. + .....++ +.-.+.++ .++++.|.+........+...+.
T Consensus 4 i~G~~~sGKS~~a~~~~~------------~---~~~~~~y-----~at~~~~d---~em~~rI~~H~~~R~~~w~t~E~ 60 (169)
T cd00544 4 VTGGARSGKSRFAERLAA------------E---LGGPVTY-----IATAEAFD---DEMAERIARHRKRRPAHWRTIET 60 (169)
T ss_pred EECCCCCCHHHHHHHHHH------------h---cCCCeEE-----EEccCcCC---HHHHHHHHHHHHhCCCCceEeec
Confidence 344444 99999999866 2 1234455 55566666 34666665543332222222211
Q ss_pred HhhHHHHHHHHhhcCCcEEEEEeCCCC
Q 037018 124 DYKLKTIILRDYLTNKKDFIVLDDVFD 150 (663)
Q Consensus 124 ~~~l~~~~l~~~L~~kr~LlVLDdv~~ 150 (663)
..++ .+.+.+ .. +.-.|++|.+..
T Consensus 61 ~~~l-~~~l~~-~~-~~~~VLIDclt~ 84 (169)
T cd00544 61 PRDL-VSALKE-LD-PGDVVLIDCLTL 84 (169)
T ss_pred HHHH-HHHHHh-cC-CCCEEEEEcHhH
Confidence 2333 333322 12 233689998643
No 482
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=63.09 E-value=18 Score=39.61 Aligned_cols=42 Identities=14% Similarity=-0.142 Sum_probs=31.8
Q ss_pred cccchhhcHHHHHHHHhcCCC-CceEEEEEec-chhhHHHHHhc
Q 037018 20 SSKTVKVKVKAVLVWLFMLDS-MWLQFLTAVA-YKTAFVADIYN 61 (663)
Q Consensus 20 ~~~G~~~~~~~i~~~L~~~~~-~~~~vi~i~G-GKTtla~~v~~ 61 (663)
.++|-+.-++.+.+.+..+.- +..-.-|.-| ||||+|+-+..
T Consensus 17 evvGQe~v~~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~Ak 60 (515)
T COG2812 17 DVVGQEHVVKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAK 60 (515)
T ss_pred HhcccHHHHHHHHHHHHhCcchhhhhhcCCCCcCchhHHHHHHH
Confidence 579999989999888876543 3455566668 99998887766
No 483
>PRK00300 gmk guanylate kinase; Provisional
Probab=62.80 E-value=4.9 Score=38.25 Aligned_cols=20 Identities=10% Similarity=0.230 Sum_probs=16.1
Q ss_pred EEEEEec----chhhHHHHHhcCC
Q 037018 44 QFLTAVA----YKTAFVADIYNNN 63 (663)
Q Consensus 44 ~vi~i~G----GKTtla~~v~~~~ 63 (663)
.+|+|+| ||||||+.+....
T Consensus 6 ~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 6 LLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 5667777 9999999999843
No 484
>PRK13947 shikimate kinase; Provisional
Probab=62.78 E-value=4.1 Score=37.50 Aligned_cols=19 Identities=11% Similarity=0.083 Sum_probs=15.4
Q ss_pred eEEEEEec-chhhHHHHHhc
Q 037018 43 LQFLTAVA-YKTAFVADIYN 61 (663)
Q Consensus 43 ~~vi~i~G-GKTtla~~v~~ 61 (663)
+-++|..| ||||+|+.+.+
T Consensus 4 I~l~G~~GsGKst~a~~La~ 23 (171)
T PRK13947 4 IVLIGFMGTGKTTVGKRVAT 23 (171)
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 45566666 99999999988
No 485
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=62.52 E-value=6.2 Score=43.79 Aligned_cols=43 Identities=14% Similarity=-0.028 Sum_probs=31.8
Q ss_pred cccchhhcHHHHHHHHhcCCCCceEEEEEec-chhhHHHHHhcC
Q 037018 20 SSKTVKVKVKAVLVWLFMLDSMWLQFLTAVA-YKTAFVADIYNN 62 (663)
Q Consensus 20 ~~~G~~~~~~~i~~~L~~~~~~~~~vi~i~G-GKTtla~~v~~~ 62 (663)
.++|.+..++.+...+.......+-+.|=.| ||||+|+.+++.
T Consensus 66 ~iiGqs~~i~~l~~al~~~~~~~vLi~Ge~GtGKt~lAr~i~~~ 109 (531)
T TIGR02902 66 EIIGQEEGIKALKAALCGPNPQHVIIYGPPGVGKTAAARLVLEE 109 (531)
T ss_pred HeeCcHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999887655433444444444 999999999873
No 486
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=62.43 E-value=14 Score=39.29 Aligned_cols=44 Identities=11% Similarity=-0.075 Sum_probs=30.8
Q ss_pred ccccchhhcHHHHHHHHhcC------------CC--CceEEEEEec-chhhHHHHHhcC
Q 037018 19 CSSKTVKVKVKAVLVWLFML------------DS--MWLQFLTAVA-YKTAFVADIYNN 62 (663)
Q Consensus 19 ~~~~G~~~~~~~i~~~L~~~------------~~--~~~~vi~i~G-GKTtla~~v~~~ 62 (663)
..++|.++.++.+...+... .. .++-++|-.| ||||+|+++...
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~ 70 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKL 70 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHH
Confidence 46889999888887666521 10 2455555556 999999999983
No 487
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=62.36 E-value=5.4 Score=37.05 Aligned_cols=19 Identities=11% Similarity=0.034 Sum_probs=15.0
Q ss_pred EEEEec----chhhHHHHHhcCC
Q 037018 45 FLTAVA----YKTAFVADIYNNN 63 (663)
Q Consensus 45 vi~i~G----GKTtla~~v~~~~ 63 (663)
++.|.| ||||+|+.+....
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~~ 25 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARARL 25 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 466666 9999999998843
No 488
>PRK07560 elongation factor EF-2; Reviewed
Probab=62.20 E-value=7.1 Score=45.30 Aligned_cols=39 Identities=15% Similarity=0.167 Sum_probs=26.6
Q ss_pred chhhc-HHHHHHHHhcCCCCceEEEEEec----chhhHHHHHhcCC
Q 037018 23 TVKVK-VKAVLVWLFMLDSMWLQFLTAVA----YKTAFVADIYNNN 63 (663)
Q Consensus 23 G~~~~-~~~i~~~L~~~~~~~~~vi~i~G----GKTtla~~v~~~~ 63 (663)
||... ++.+.+++.. .. ++|-|+|+| |||||+.++....
T Consensus 1 ~~~~~~~~~~~~~~~~-~~-~iRni~iigh~d~GKTTL~e~ll~~~ 44 (731)
T PRK07560 1 GRRKKMVEKILELMKN-PE-QIRNIGIIAHIDHGKTTLSDNLLAGA 44 (731)
T ss_pred CcchHHHHHHHHHhhc-hh-cccEEEEEEeCCCCHHHHHHHHHHHc
Confidence 44333 4555555544 33 689999999 9999999987643
No 489
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=62.04 E-value=17 Score=40.29 Aligned_cols=46 Identities=7% Similarity=-0.048 Sum_probs=34.2
Q ss_pred cccccchhhcHHHHHHHHhcCCC--CceEEEEEec-chhhHHHHHhcCC
Q 037018 18 SCSSKTVKVKVKAVLVWLFMLDS--MWLQFLTAVA-YKTAFVADIYNNN 63 (663)
Q Consensus 18 ~~~~~G~~~~~~~i~~~L~~~~~--~~~~vi~i~G-GKTtla~~v~~~~ 63 (663)
...++|....++++.+.+..-.. ..+-+.|=.| |||++|+.|.+..
T Consensus 186 ~~~iig~s~~~~~~~~~i~~~a~~~~pVlI~Ge~GtGK~~~A~~ih~~s 234 (509)
T PRK05022 186 EGEMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAAS 234 (509)
T ss_pred CCceeecCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhC
Confidence 34689999888888887765332 2455666666 9999999999844
No 490
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=62.01 E-value=5.7 Score=36.91 Aligned_cols=48 Identities=21% Similarity=0.340 Sum_probs=28.1
Q ss_pred HHHHHhhcCCcEEEEEeCCCC--ChhhHHHHHhhCCCC-CC-CceEEEEEeC
Q 037018 130 IILRDYLTNKKDFIVLDDVFD--DREIWNDLEKFLPDN-QN-GSRVLILVTD 177 (663)
Q Consensus 130 ~~l~~~L~~kr~LlVLDdv~~--~~~~~~~l~~~~~~~-~~-gskIiiT~r~ 177 (663)
-.+-+.+-.+.=+++||+.-. |....+.+...+... .. |.-||++|.+
T Consensus 109 ~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~ 160 (178)
T cd03229 109 VALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHD 160 (178)
T ss_pred HHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 334555666667788999877 555555555544421 22 5566666543
No 491
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=61.80 E-value=49 Score=31.96 Aligned_cols=48 Identities=10% Similarity=0.073 Sum_probs=28.9
Q ss_pred HHHHHHhhcCCcEEEEEeCCCC--ChhhHHHHHhhCC--CCCCCceEEEEEe
Q 037018 129 TIILRDYLTNKKDFIVLDDVFD--DREIWNDLEKFLP--DNQNGSRVLILVT 176 (663)
Q Consensus 129 ~~~l~~~L~~kr~LlVLDdv~~--~~~~~~~l~~~~~--~~~~gskIiiT~r 176 (663)
..++-+-+-=+.=|.|||...+ |-+..+.+...+. .....+-+|||+.
T Consensus 152 R~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy 203 (251)
T COG0396 152 RNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHY 203 (251)
T ss_pred HHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecH
Confidence 3444455555667899999998 5555555554433 2233567777754
No 492
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=61.64 E-value=4.9 Score=24.02 Aligned_cols=17 Identities=35% Similarity=0.485 Sum_probs=10.5
Q ss_pred CcCeEeccCCCCccchh
Q 037018 396 HLKYLKLNIPSLNCLPS 412 (663)
Q Consensus 396 ~L~~L~L~~~~i~~lp~ 412 (663)
+|++|++++|.++++|+
T Consensus 3 ~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLTSLPE 19 (26)
T ss_pred ccceeecCCCccccCcc
Confidence 45666666666666663
No 493
>PF00488 MutS_V: MutS domain V C-terminus.; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B ....
Probab=61.58 E-value=1.2 Score=43.70 Aligned_cols=40 Identities=18% Similarity=0.281 Sum_probs=22.7
Q ss_pred CCcEEEEEeCCCC--ChhhHHHH----HhhCCCCCCCceEEEEEeCC
Q 037018 138 NKKDFIVLDDVFD--DREIWNDL----EKFLPDNQNGSRVLILVTDP 178 (663)
Q Consensus 138 ~kr~LlVLDdv~~--~~~~~~~l----~~~~~~~~~gskIiiT~r~~ 178 (663)
+++-||++|.+.. ++.+=..+ ...+.. ..++.+++||...
T Consensus 121 ~~~sLvliDE~g~gT~~~eg~ai~~aile~l~~-~~~~~~i~~TH~~ 166 (235)
T PF00488_consen 121 TEKSLVLIDELGRGTNPEEGIAIAIAILEYLLE-KSGCFVIIATHFH 166 (235)
T ss_dssp -TTEEEEEESTTTTSSHHHHHHHHHHHHHHHHH-TTT-EEEEEES-G
T ss_pred ccceeeecccccCCCChhHHHHHHHHHHHHHHH-hccccEEEEeccc
Confidence 4778999999987 43332222 222222 2488999997754
No 494
>PRK15453 phosphoribulokinase; Provisional
Probab=61.54 E-value=5.5 Score=39.77 Aligned_cols=20 Identities=5% Similarity=-0.077 Sum_probs=16.7
Q ss_pred ceEEEEEec----chhhHHHHHhc
Q 037018 42 WLQFLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 42 ~~~vi~i~G----GKTtla~~v~~ 61 (663)
+-.+|+|.| ||||+|+++.+
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~ 27 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEK 27 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 346888888 99999998876
No 495
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=61.48 E-value=6 Score=41.66 Aligned_cols=33 Identities=12% Similarity=-0.023 Sum_probs=25.1
Q ss_pred HHHHHHHHhcCCCCceEEEEEec-chhhHHHHHhc
Q 037018 28 VKAVLVWLFMLDSMWLQFLTAVA-YKTAFVADIYN 61 (663)
Q Consensus 28 ~~~i~~~L~~~~~~~~~vi~i~G-GKTtla~~v~~ 61 (663)
-+++++.|.+... ++-+-|--| ||||+||++.+
T Consensus 252 ~dkl~eRL~erae-GILIAG~PGaGKsTFaqAlAe 285 (604)
T COG1855 252 SDKLKERLEERAE-GILIAGAPGAGKSTFAQALAE 285 (604)
T ss_pred CHHHHHHHHhhhc-ceEEecCCCCChhHHHHHHHH
Confidence 3567777776554 677777777 99999999877
No 496
>CHL00060 atpB ATP synthase CF1 beta subunit
Probab=61.47 E-value=31 Score=37.52 Aligned_cols=100 Identities=12% Similarity=0.095 Sum_probs=52.3
Q ss_pred ceEEEEEec-chhhHHHHHhcCCCccccCCCCccccCCceeeccCCCcceEeCCCcchhHHHHHHHHHHHhCCC------
Q 037018 42 WLQFLTAVA-YKTAFVADIYNNNVDLSAMNPKLRVPKRFINKAFPVAFPVDVNCACNAQLNHILDDIIKSVMPP------ 114 (663)
Q Consensus 42 ~~~vi~i~G-GKTtla~~v~~~~~~~~~~~~~~~~~~~F~~~~~~~~~~v~vs~~~~~~~~~l~~~i~~~l~~~------ 114 (663)
+..++|-.| |||||+..+..+- .+.+=+.+++ +-+.+...+ ..++.+++...-..+
T Consensus 163 R~gIfgg~GvGKs~L~~~~~~~~-----------~~~~~dv~V~-----~lIGERgrE-v~efi~~~~~~~~~~~~~~~~ 225 (494)
T CHL00060 163 KIGLFGGAGVGKTVLIMELINNI-----------AKAHGGVSVF-----GGVGERTRE-GNDLYMEMKESGVINEQNIAE 225 (494)
T ss_pred EEeeecCCCCChhHHHHHHHHHH-----------HHhcCCeEEE-----EEeccCchH-HHHHHHHHHhcCccccCcccc
Confidence 444444444 9999999887731 1111166777 766665441 456666665511110
Q ss_pred ---------CCcchhhhh-HhhHHHHHHHHhhc--C-CcEEEEEeCCCCChhhHHHHH
Q 037018 115 ---------SRVNVIISE-DYKLKTIILRDYLT--N-KKDFIVLDDVFDDREIWNDLE 159 (663)
Q Consensus 115 ---------~~~~~~~~~-~~~l~~~~l~~~L~--~-kr~LlVLDdv~~~~~~~~~l~ 159 (663)
.+.+...-. .... +-.+-++++ + +.+||++||+-.-.+.+.++.
T Consensus 226 ~rsvvv~atsd~p~~~R~~a~~~-A~tiAEyfrd~g~~~VLll~DslTR~A~A~REIs 282 (494)
T CHL00060 226 SKVALVYGQMNEPPGARMRVGLT-ALTMAEYFRDVNKQDVLLFIDNIFRFVQAGSEVS 282 (494)
T ss_pred cceEEEEECCCCCHHHHHHHHHH-HHHHHHHHHHcCCCCEEEEcccchHHHHHHHHHH
Confidence 000101111 2223 344566663 3 499999999976344444444
No 497
>PRK14495 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/unknown domain fusion protein; Provisional
Probab=61.40 E-value=5.3 Score=42.38 Aligned_cols=18 Identities=17% Similarity=0.224 Sum_probs=16.1
Q ss_pred EEEEEec----chhhHHHHHhc
Q 037018 44 QFLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 44 ~vi~i~G----GKTtla~~v~~ 61 (663)
+|++|+| |||||+.++-.
T Consensus 2 kVi~IvG~sgSGKTTLiekLI~ 23 (452)
T PRK14495 2 RVYGIIGWKDAGKTGLVERLVA 23 (452)
T ss_pred cEEEEEecCCCCHHHHHHHHHH
Confidence 5888888 99999999888
No 498
>COG1672 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=61.39 E-value=11 Score=39.59 Aligned_cols=41 Identities=7% Similarity=0.009 Sum_probs=34.7
Q ss_pred cccchhhcHHHHHHHHhcCCCCceEEEEEec----chhhHHHHHhcCC
Q 037018 20 SSKTVKVKVKAVLVWLFMLDSMWLQFLTAVA----YKTAFVADIYNNN 63 (663)
Q Consensus 20 ~~~G~~~~~~~i~~~L~~~~~~~~~vi~i~G----GKTtla~~v~~~~ 63 (663)
.+++|+.+.+++.+.+.... ...+-|.| |||+|++.+-+..
T Consensus 3 ~f~dRE~El~~L~~~~~~~~---~~~~~i~G~rrvGKTsLl~~~~~~~ 47 (359)
T COG1672 3 KFFDREKELEELLKIIESEP---PSIVFIYGRRRVGKTSLLKEFIKEK 47 (359)
T ss_pred chhhHHHHHHHHHHHHhcCC---CeEEEEEcccccCHHHHHHHHHhcC
Confidence 58899999999999888764 35689999 9999999999844
No 499
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=61.33 E-value=61 Score=33.50 Aligned_cols=41 Identities=20% Similarity=0.374 Sum_probs=29.3
Q ss_pred CCcEEEEEeCCCC-ChhhHHHHHhhCCCCCCCceEEEEEeCC
Q 037018 138 NKKDFIVLDDVFD-DREIWNDLEKFLPDNQNGSRVLILVTDP 178 (663)
Q Consensus 138 ~kr~LlVLDdv~~-~~~~~~~l~~~~~~~~~gskIiiT~r~~ 178 (663)
+++=.+|+|++.. .....+.+...+-.-..++.+|.+|..+
T Consensus 109 ~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~ 150 (329)
T PRK08058 109 SNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENK 150 (329)
T ss_pred cCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCCh
Confidence 3444578999887 5667888888887666677777776643
No 500
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=61.31 E-value=5.8 Score=37.97 Aligned_cols=47 Identities=21% Similarity=0.352 Sum_probs=27.2
Q ss_pred HHHHhhcCCcEEEEEeCCCC--ChhhHHHHHhhCCCC-CCCceEEEEEeC
Q 037018 131 ILRDYLTNKKDFIVLDDVFD--DREIWNDLEKFLPDN-QNGSRVLILVTD 177 (663)
Q Consensus 131 ~l~~~L~~kr~LlVLDdv~~--~~~~~~~l~~~~~~~-~~gskIiiT~r~ 177 (663)
.+-+.+-.+.=+++||+.-+ |....+.+...+... ..|.-||++|.+
T Consensus 144 ~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~ 193 (211)
T cd03225 144 AIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHD 193 (211)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 34455555666889999877 555555555544321 225566666554
Done!