Query 037018
Match_columns 663
No_of_seqs 335 out of 4566
Neff 9.5
Searched_HMMs 29240
Date Mon Mar 25 12:51:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037018.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037018hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 1.3E-33 4.5E-38 312.4 16.6 252 20-309 129-473 (549)
2 2id5_A Lingo-1, leucine rich r 100.0 6.4E-27 2.2E-31 255.6 26.9 311 326-650 16-331 (477)
3 3rgz_A Protein brassinosteroid 99.9 4.1E-27 1.4E-31 271.8 19.8 317 321-650 294-715 (768)
4 4fmz_A Internalin; leucine ric 99.9 5.2E-26 1.8E-30 237.7 25.9 300 319-650 42-344 (347)
5 3v47_A TOLL-like receptor 5B a 99.9 1.6E-26 5.4E-31 250.9 22.9 319 319-650 28-406 (455)
6 3rgz_A Protein brassinosteroid 99.9 1.2E-26 4E-31 268.0 21.8 317 320-650 199-549 (768)
7 1vt4_I APAF-1 related killer D 99.9 1.5E-27 5E-32 267.7 11.9 237 21-301 130-437 (1221)
8 3vq2_A TLR4, TOLL-like recepto 99.9 5.5E-26 1.9E-30 255.9 22.4 129 319-451 30-163 (606)
9 4eco_A Uncharacterized protein 99.9 8.3E-26 2.8E-30 255.0 23.2 313 319-650 247-598 (636)
10 4eco_A Uncharacterized protein 99.9 1.3E-26 4.4E-31 261.7 16.0 318 319-650 204-577 (636)
11 3sfz_A APAF-1, apoptotic pepti 99.9 2E-26 6.7E-31 281.1 18.8 259 17-307 122-452 (1249)
12 4fmz_A Internalin; leucine ric 99.9 3.1E-25 1.1E-29 231.7 25.3 279 343-650 43-322 (347)
13 3t6q_A CD180 antigen; protein- 99.9 7E-26 2.4E-30 255.1 21.3 320 319-650 31-436 (606)
14 4ecn_A Leucine-rich repeat pro 99.9 1.8E-25 6E-30 257.1 24.7 316 319-650 489-838 (876)
15 3o6n_A APL1; leucine-rich repe 99.9 2.9E-25 1E-29 235.9 24.6 283 343-650 44-350 (390)
16 4ecn_A Leucine-rich repeat pro 99.9 5.7E-26 1.9E-30 261.2 20.4 318 319-651 446-818 (876)
17 3t6q_A CD180 antigen; protein- 99.9 5.1E-25 1.7E-29 248.1 25.9 270 373-649 255-533 (606)
18 2z7x_B TOLL-like receptor 1, v 99.9 3.5E-25 1.2E-29 244.6 22.7 310 319-650 19-479 (520)
19 2z63_A TOLL-like receptor 4, v 99.9 2.5E-25 8.6E-30 248.6 21.0 110 540-650 420-529 (570)
20 1o6v_A Internalin A; bacterial 99.9 1.5E-24 5.3E-29 235.9 26.0 298 321-650 46-364 (466)
21 3vq2_A TLR4, TOLL-like recepto 99.9 5.8E-25 2E-29 247.6 21.4 145 326-476 16-164 (606)
22 3oja_B Anopheles plasmodium-re 99.9 1.6E-24 5.4E-29 243.1 24.0 286 343-650 50-356 (597)
23 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 9.9E-25 3.4E-29 243.2 22.1 309 320-650 51-508 (562)
24 2z7x_B TOLL-like receptor 1, v 99.9 1.4E-24 4.8E-29 239.8 22.8 142 324-476 3-149 (520)
25 3v47_A TOLL-like receptor 5B a 99.9 6.9E-25 2.4E-29 238.0 18.7 296 342-650 28-382 (455)
26 2id5_A Lingo-1, leucine rich r 99.9 3.7E-24 1.3E-28 233.7 23.8 271 371-650 31-307 (477)
27 1o6v_A Internalin A; bacterial 99.9 8.1E-24 2.8E-28 230.1 25.5 299 320-650 67-386 (466)
28 2z63_A TOLL-like receptor 4, v 99.9 2.1E-24 7.3E-29 241.1 21.5 160 484-650 344-505 (570)
29 4fcg_A Uncharacterized protein 99.9 2.2E-24 7.6E-29 223.0 19.9 233 369-648 78-310 (328)
30 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 3.5E-24 1.2E-28 238.8 23.0 306 323-650 33-484 (562)
31 3j0a_A TOLL-like receptor 5; m 99.9 1.8E-23 6E-28 244.0 27.1 313 319-650 22-392 (844)
32 3o6n_A APL1; leucine-rich repe 99.9 1.1E-23 3.6E-28 223.9 20.6 263 369-650 42-329 (390)
33 3j0a_A TOLL-like receptor 5; m 99.9 1.2E-23 4.2E-28 245.3 22.4 309 330-650 13-373 (844)
34 1xku_A Decorin; proteoglycan, 99.9 4.7E-23 1.6E-27 213.6 23.9 262 372-649 52-329 (330)
35 1ziw_A TOLL-like receptor 3; i 99.9 2.5E-23 8.4E-28 237.6 22.6 317 319-649 23-363 (680)
36 3bz5_A Internalin-J, INLJ; leu 99.9 6.2E-23 2.1E-27 221.8 24.4 290 320-650 41-350 (457)
37 2z81_A CD282 antigen, TOLL-lik 99.9 1.5E-23 5.1E-28 233.2 19.6 322 319-650 24-421 (549)
38 3bz5_A Internalin-J, INLJ; leu 99.9 5E-23 1.7E-27 222.5 22.6 269 343-650 41-329 (457)
39 1ogq_A PGIP-2, polygalacturona 99.9 2.9E-24 1E-28 220.8 12.2 247 372-630 50-306 (313)
40 1ogq_A PGIP-2, polygalacturona 99.9 3.6E-24 1.2E-28 220.1 11.4 244 395-650 50-302 (313)
41 1ziw_A TOLL-like receptor 3; i 99.9 6.1E-23 2.1E-27 234.3 22.8 321 320-649 48-440 (680)
42 2ft3_A Biglycan; proteoglycan, 99.9 5.3E-23 1.8E-27 213.4 20.1 283 345-650 34-331 (332)
43 1xku_A Decorin; proteoglycan, 99.9 6.7E-23 2.3E-27 212.5 20.7 264 373-651 32-305 (330)
44 2ft3_A Biglycan; proteoglycan, 99.9 8.2E-23 2.8E-27 212.0 20.9 264 373-652 34-307 (332)
45 2z81_A CD282 antigen, TOLL-lik 99.9 6.8E-23 2.3E-27 227.8 21.6 314 320-650 49-508 (549)
46 3oja_B Anopheles plasmodium-re 99.9 6E-23 2.1E-27 230.2 20.5 262 370-650 49-335 (597)
47 1z6t_A APAF-1, apoptotic prote 99.9 2E-23 6.9E-28 234.0 14.6 257 17-304 122-449 (591)
48 4fcg_A Uncharacterized protein 99.9 8.8E-23 3E-27 211.0 15.4 221 343-576 80-312 (328)
49 2z80_A TOLL-like receptor 2, v 99.9 4.1E-22 1.4E-26 208.5 19.2 270 371-650 30-312 (353)
50 2z66_A Variable lymphocyte rec 99.9 7.4E-22 2.5E-26 202.3 16.8 222 372-602 28-259 (306)
51 4g8a_A TOLL-like receptor 4; l 99.9 2.8E-21 9.4E-26 218.5 22.8 322 318-650 49-578 (635)
52 1jl5_A Outer protein YOPM; leu 99.9 3.5E-21 1.2E-25 207.9 22.2 288 319-651 89-408 (454)
53 1ozn_A Reticulon 4 receptor; N 99.9 2E-21 7E-26 196.8 15.4 264 375-649 14-284 (285)
54 2z80_A TOLL-like receptor 2, v 99.9 2.7E-21 9.1E-26 202.4 16.5 249 372-630 52-316 (353)
55 2z66_A Variable lymphocyte rec 99.9 1.5E-21 5.3E-26 199.9 13.9 242 375-628 10-261 (306)
56 3zyj_A Leucine-rich repeat-con 99.9 1E-20 3.5E-25 204.1 20.8 238 376-626 47-290 (440)
57 3zyi_A Leucine-rich repeat-con 99.9 1.1E-20 3.9E-25 204.5 20.6 219 372-601 75-300 (452)
58 3g06_A SSPH2 (leucine-rich rep 99.9 4.1E-20 1.4E-24 205.8 24.8 256 323-629 42-298 (622)
59 1z7x_W Ribonuclease inhibitor; 99.8 3.3E-23 1.1E-27 225.1 -1.4 269 373-650 86-409 (461)
60 3zyi_A Leucine-rich repeat-con 99.8 2.1E-20 7.1E-25 202.4 20.5 241 373-626 55-301 (452)
61 3zyj_A Leucine-rich repeat-con 99.8 3.4E-20 1.2E-24 200.0 20.3 244 396-650 44-290 (440)
62 3o53_A Protein LRIM1, AGAP0063 99.8 1.7E-21 5.8E-26 200.6 8.0 247 365-631 27-278 (317)
63 3g06_A SSPH2 (leucine-rich rep 99.8 9.4E-20 3.2E-24 202.8 21.7 256 343-650 39-295 (622)
64 1ozn_A Reticulon 4 receptor; N 99.8 3.2E-20 1.1E-24 188.0 15.8 245 371-625 31-284 (285)
65 4g8a_A TOLL-like receptor 4; l 99.8 6.6E-20 2.3E-24 207.2 19.7 297 319-628 74-580 (635)
66 1jl5_A Outer protein YOPM; leu 99.8 2.7E-19 9.3E-24 193.0 23.2 282 322-650 72-368 (454)
67 1wwl_A Monocyte differentiatio 99.8 4.2E-21 1.4E-25 197.2 7.0 243 392-650 40-307 (312)
68 1z7x_W Ribonuclease inhibitor; 99.8 3.4E-22 1.2E-26 217.1 -2.4 325 320-650 2-381 (461)
69 3ogk_B Coronatine-insensitive 99.8 8.8E-21 3E-25 212.8 7.4 220 346-573 140-411 (592)
70 3oja_A Leucine-rich immune mol 99.8 1.8E-20 6.2E-25 204.2 8.8 237 369-625 31-272 (487)
71 3o53_A Protein LRIM1, AGAP0063 99.8 9.2E-21 3.1E-25 195.1 4.2 265 343-629 33-300 (317)
72 1wwl_A Monocyte differentiatio 99.8 6.8E-21 2.3E-25 195.6 2.7 245 369-628 40-309 (312)
73 3ogk_B Coronatine-insensitive 99.8 3E-20 1E-24 208.4 7.9 298 343-650 111-499 (592)
74 2z62_A TOLL-like receptor 4, v 99.8 2.5E-18 8.5E-23 173.2 17.2 200 372-578 28-237 (276)
75 1h6u_A Internalin H; cell adhe 99.8 3.9E-18 1.3E-22 174.5 16.5 195 369-581 38-233 (308)
76 2o6q_A Variable lymphocyte rec 99.8 1.6E-17 5.4E-22 166.7 19.8 197 373-577 17-217 (270)
77 2p1m_B Transport inhibitor res 99.8 1.6E-19 5.6E-24 202.5 5.4 321 321-651 105-518 (594)
78 3oja_A Leucine-rich immune mol 99.8 2.3E-18 7.9E-23 187.6 14.0 233 394-647 33-270 (487)
79 2ast_B S-phase kinase-associat 99.8 1.4E-19 4.9E-24 187.8 4.0 254 345-635 48-313 (336)
80 3rfs_A Internalin B, repeat mo 99.7 1.9E-17 6.4E-22 166.3 15.9 206 394-616 40-247 (272)
81 2o6q_A Variable lymphocyte rec 99.7 5.3E-17 1.8E-21 162.8 18.5 197 395-602 16-216 (270)
82 2z62_A TOLL-like receptor 4, v 99.7 1.7E-17 6E-22 166.9 14.8 214 376-600 11-233 (276)
83 2ca6_A RAN GTPase-activating p 99.7 2.4E-19 8.2E-24 189.9 1.0 209 364-579 24-288 (386)
84 2ast_B S-phase kinase-associat 99.7 4.4E-19 1.5E-23 184.1 2.6 221 373-625 48-282 (336)
85 1p9a_G Platelet glycoprotein I 99.7 6.8E-17 2.3E-21 163.6 18.6 199 369-578 7-208 (290)
86 2xwt_C Thyrotropin receptor; s 99.7 1.1E-17 3.6E-22 164.7 11.8 194 396-601 32-236 (239)
87 1h6u_A Internalin H; cell adhe 99.7 5.4E-17 1.8E-21 166.0 16.9 192 343-556 40-232 (308)
88 2ca6_A RAN GTPase-activating p 99.7 4.7E-19 1.6E-23 187.7 1.1 231 343-580 31-318 (386)
89 3rfs_A Internalin B, repeat mo 99.7 2.6E-17 8.8E-22 165.3 13.7 226 396-640 20-247 (272)
90 2p1m_B Transport inhibitor res 99.7 4.9E-19 1.7E-23 198.6 0.5 300 343-649 183-541 (594)
91 1p9a_G Platelet glycoprotein I 99.7 3.8E-17 1.3E-21 165.5 14.2 199 391-602 6-206 (290)
92 4glp_A Monocyte differentiatio 99.7 5.9E-17 2E-21 166.0 12.1 223 343-577 63-306 (310)
93 4ay9_X Follicle-stimulating ho 99.7 3.4E-16 1.2E-20 163.2 16.2 235 375-624 12-255 (350)
94 2xwt_C Thyrotropin receptor; s 99.7 1.1E-16 3.8E-21 157.3 10.0 209 404-650 20-237 (239)
95 4ay9_X Follicle-stimulating ho 99.7 3.8E-16 1.3E-20 162.8 14.5 240 397-648 11-255 (350)
96 3goz_A Leucine-rich repeat-con 99.7 2.8E-17 9.7E-22 172.2 4.8 233 364-602 14-295 (362)
97 3goz_A Leucine-rich repeat-con 99.7 1.3E-17 4.3E-22 175.0 1.7 250 376-630 2-299 (362)
98 4glp_A Monocyte differentiatio 99.6 3.9E-16 1.3E-20 159.9 10.8 156 485-650 143-305 (310)
99 1h6t_A Internalin B; cell adhe 99.6 7.9E-16 2.7E-20 155.9 12.3 169 369-553 43-212 (291)
100 3m19_A Variable lymphocyte rec 99.6 4.8E-15 1.7E-19 146.8 16.8 178 372-579 14-193 (251)
101 3m19_A Variable lymphocyte rec 99.6 9.5E-15 3.3E-19 144.6 17.2 147 344-497 14-165 (251)
102 1m9s_A Internalin B; cell inva 99.6 2.4E-15 8.2E-20 167.2 13.7 171 369-555 40-211 (605)
103 1h6t_A Internalin B; cell adhe 99.6 2E-14 7E-19 145.5 16.0 172 343-531 45-217 (291)
104 3cvr_A Invasion plasmid antige 99.6 2.2E-14 7.5E-19 157.7 16.1 181 372-582 59-247 (571)
105 1m9s_A Internalin B; cell inva 99.6 2.4E-14 8.1E-19 159.2 16.4 191 374-581 23-213 (605)
106 3cvr_A Invasion plasmid antige 99.5 2.7E-14 9.4E-19 156.9 13.9 188 344-565 59-254 (571)
107 4ezg_A Putative uncharacterize 99.5 2.3E-14 7.8E-19 136.3 11.3 153 393-578 42-194 (197)
108 4ezg_A Putative uncharacterize 99.5 5E-14 1.7E-18 133.9 12.8 129 461-602 62-192 (197)
109 1xeu_A Internalin C; cellular 99.5 1.6E-14 5.6E-19 143.9 9.5 121 370-497 17-138 (263)
110 1xeu_A Internalin C; cellular 99.5 1.9E-14 6.4E-19 143.4 8.0 122 369-497 38-160 (263)
111 2o6s_A Variable lymphocyte rec 99.5 1.2E-13 4.1E-18 132.4 12.7 100 375-476 10-111 (208)
112 2o6s_A Variable lymphocyte rec 99.5 2.1E-13 7.2E-18 130.7 14.0 181 397-616 9-190 (208)
113 1dce_A Protein (RAB geranylger 99.5 1E-15 3.5E-20 169.1 -4.9 215 392-646 346-567 (567)
114 1dce_A Protein (RAB geranylger 99.5 2.1E-15 7.1E-20 166.6 -3.5 177 369-579 346-547 (567)
115 2xot_A Amphoterin-induced prot 99.4 3.6E-13 1.2E-17 140.8 11.4 170 375-553 21-201 (361)
116 2v9t_B SLIT homolog 2 protein 99.4 1.3E-12 4.4E-17 126.3 14.4 99 375-476 14-115 (220)
117 2v70_A SLIT-2, SLIT homolog 2 99.4 1.2E-12 4.2E-17 126.5 13.6 121 375-497 14-139 (220)
118 3e6j_A Variable lymphocyte rec 99.4 2.1E-12 7.2E-17 125.7 14.4 149 375-554 22-172 (229)
119 3e6j_A Variable lymphocyte rec 99.4 2.3E-12 7.8E-17 125.5 14.4 153 396-579 20-173 (229)
120 3sb4_A Hypothetical leucine ri 99.4 1.5E-12 5.3E-17 134.2 13.8 287 343-646 24-328 (329)
121 2xot_A Amphoterin-induced prot 99.4 7.4E-13 2.5E-17 138.4 10.7 153 372-527 39-202 (361)
122 4b8c_D Glucose-repressible alc 99.4 2.4E-13 8.3E-18 154.8 5.4 111 365-476 217-327 (727)
123 2v9t_B SLIT homolog 2 protein 99.4 2.9E-12 9.8E-17 123.9 12.1 149 397-577 13-164 (220)
124 2ell_A Acidic leucine-rich nuc 99.4 1.6E-12 5.5E-17 119.9 9.6 127 369-497 21-157 (168)
125 2v70_A SLIT-2, SLIT homolog 2 99.3 4.7E-12 1.6E-16 122.4 12.3 108 540-650 56-164 (220)
126 2je0_A Acidic leucine-rich nuc 99.3 2E-12 6.7E-17 116.7 7.5 124 369-494 14-147 (149)
127 4b8c_D Glucose-repressible alc 99.3 6.6E-13 2.2E-17 151.3 5.2 128 379-509 208-336 (727)
128 2ell_A Acidic leucine-rich nuc 99.3 4.6E-12 1.6E-16 116.8 9.6 135 393-531 22-164 (168)
129 1a9n_A U2A', U2A'; complex (nu 99.3 4.7E-12 1.6E-16 117.8 6.8 126 369-497 16-150 (176)
130 2je0_A Acidic leucine-rich nuc 99.2 6.3E-12 2.2E-16 113.4 6.9 126 343-473 16-148 (149)
131 1w8a_A SLIT protein; signaling 99.2 2.9E-11 9.8E-16 114.2 11.2 122 375-498 11-137 (192)
132 2wfh_A SLIT homolog 2 protein 99.2 6.7E-11 2.3E-15 111.6 13.3 122 375-498 13-137 (193)
133 1a9n_A U2A', U2A'; complex (nu 99.2 2.1E-11 7.2E-16 113.3 7.6 127 343-476 18-151 (176)
134 4fdw_A Leucine rich hypothetic 99.2 1.9E-09 6.7E-14 113.6 22.4 243 373-659 136-387 (401)
135 1w8a_A SLIT protein; signaling 99.1 1.1E-10 3.8E-15 110.0 10.0 99 397-497 10-112 (192)
136 3sb4_A Hypothetical leucine ri 99.1 2.2E-10 7.6E-15 117.9 13.0 282 321-622 25-328 (329)
137 4fdw_A Leucine rich hypothetic 99.1 2.4E-09 8.2E-14 112.9 20.3 217 343-577 134-357 (401)
138 2wfh_A SLIT homolog 2 protein 99.1 3.8E-10 1.3E-14 106.4 12.2 99 397-497 12-112 (193)
139 1ds9_A Outer arm dynein; leuci 99.1 9.6E-13 3.3E-17 125.1 -5.8 105 390-497 43-150 (198)
140 2o6r_A Variable lymphocyte rec 99.1 1.2E-09 4.1E-14 101.4 13.5 122 374-497 9-134 (177)
141 1ds9_A Outer arm dynein; leuci 99.1 4.2E-12 1.4E-16 120.6 -3.9 128 363-493 39-180 (198)
142 2o6r_A Variable lymphocyte rec 99.0 1.5E-09 5.1E-14 100.8 12.3 106 541-650 28-135 (177)
143 2r9u_A Variable lymphocyte rec 98.9 5E-09 1.7E-13 96.9 12.0 99 375-476 15-116 (174)
144 3g39_A Variable lymphocyte rec 98.9 4.1E-09 1.4E-13 97.1 11.2 101 374-476 11-113 (170)
145 4fs7_A Uncharacterized protein 98.8 1.6E-07 5.5E-12 99.0 18.4 278 343-648 70-375 (394)
146 3g39_A Variable lymphocyte rec 98.7 3.9E-08 1.3E-12 90.4 10.3 101 396-498 10-113 (170)
147 2r9u_A Variable lymphocyte rec 98.7 4.7E-08 1.6E-12 90.3 10.3 99 397-498 14-116 (174)
148 2ra8_A Uncharacterized protein 98.7 7.9E-09 2.7E-13 107.0 4.6 138 505-650 164-318 (362)
149 3un9_A NLR family member X1; l 98.7 2.4E-09 8.4E-14 111.7 -0.1 62 371-432 71-140 (372)
150 3un9_A NLR family member X1; l 98.6 3.4E-09 1.2E-13 110.6 0.4 110 343-452 71-194 (372)
151 4gt6_A Cell surface protein; l 98.6 4.7E-06 1.6E-10 87.7 21.4 283 345-650 65-368 (394)
152 2ifg_A High affinity nerve gro 98.5 2.5E-07 8.6E-12 95.6 10.7 81 369-449 28-111 (347)
153 4fs7_A Uncharacterized protein 98.5 1.2E-06 4.1E-11 92.2 15.5 234 389-644 156-393 (394)
154 2ra8_A Uncharacterized protein 98.5 1.3E-07 4.5E-12 97.8 7.1 64 563-627 250-319 (362)
155 1w5s_A Origin recognition comp 98.4 3.2E-07 1.1E-11 97.2 8.8 110 19-150 22-149 (412)
156 3e4g_A ATP synthase subunit S, 98.4 1.6E-07 5.4E-12 85.6 4.9 89 540-630 60-154 (176)
157 4gt6_A Cell surface protein; l 98.4 5.8E-06 2E-10 86.9 17.8 303 322-648 65-387 (394)
158 2ifg_A High affinity nerve gro 98.3 9.5E-07 3.2E-11 91.3 8.9 98 376-476 12-114 (347)
159 4h09_A Hypothetical leucine ri 98.3 3.3E-05 1.1E-09 80.7 19.9 257 343-623 45-341 (379)
160 3e4g_A ATP synthase subunit S, 98.1 8.9E-07 3E-11 80.6 2.9 84 565-650 61-150 (176)
161 1fnn_A CDC6P, cell division co 98.1 1.9E-05 6.3E-10 82.8 12.1 138 19-178 17-169 (389)
162 1io0_A Tropomodulin; LRR prote 98.0 2.9E-06 9.9E-11 78.9 3.9 84 365-448 29-128 (185)
163 2v1u_A Cell division control p 98.0 1.1E-05 3.9E-10 84.3 7.8 137 19-178 19-177 (387)
164 4h09_A Hypothetical leucine ri 97.9 0.00049 1.7E-08 71.6 20.3 136 460-608 212-348 (379)
165 2qby_B CDC6 homolog 3, cell di 97.9 1.4E-05 4.7E-10 83.7 7.7 136 19-178 20-174 (384)
166 1io0_A Tropomodulin; LRR prote 97.9 1E-05 3.5E-10 75.2 5.6 109 343-451 35-161 (185)
167 2qen_A Walker-type ATPase; unk 97.9 1.5E-05 5.2E-10 82.0 7.1 130 17-177 10-173 (350)
168 2qby_A CDC6 homolog 1, cell di 97.8 1.1E-05 3.9E-10 84.2 5.3 137 19-178 20-173 (386)
169 2chg_A Replication factor C sm 97.8 3.1E-05 1.1E-09 73.8 7.3 121 19-178 17-142 (226)
170 2fna_A Conserved hypothetical 97.7 4.2E-05 1.4E-09 78.9 7.5 37 18-61 12-52 (357)
171 1njg_A DNA polymerase III subu 97.7 2.3E-05 7.9E-10 75.9 4.4 133 18-178 22-166 (250)
172 3rw6_A Nuclear RNA export fact 97.5 5.6E-05 1.9E-09 74.0 4.9 81 368-449 166-259 (267)
173 1sxj_B Activator 1 37 kDa subu 97.4 0.00014 4.9E-09 73.8 5.5 118 18-177 20-146 (323)
174 3rw6_A Nuclear RNA export fact 97.3 0.00015 5.2E-09 70.9 4.1 38 511-553 168-208 (267)
175 3te6_A Regulatory protein SIR3 97.2 0.00045 1.5E-08 69.3 6.5 131 20-174 21-167 (318)
176 1iqp_A RFCS; clamp loader, ext 97.0 0.00064 2.2E-08 69.0 5.8 119 19-178 25-150 (327)
177 1jbk_A CLPB protein; beta barr 96.7 0.00069 2.4E-08 62.5 2.8 43 19-61 22-65 (195)
178 3ec2_A DNA replication protein 96.4 0.0045 1.5E-07 56.7 6.2 38 24-61 19-60 (180)
179 2p65_A Hypothetical protein PF 96.2 0.0025 8.5E-08 58.4 3.3 43 19-61 22-65 (187)
180 2chq_A Replication factor C sm 96.1 0.0079 2.7E-07 60.5 7.2 118 18-177 16-141 (319)
181 2w58_A DNAI, primosome compone 96.0 0.004 1.4E-07 58.2 3.9 35 27-61 37-76 (202)
182 3h4m_A Proteasome-activating n 95.9 0.012 4.1E-07 58.2 7.2 44 18-61 16-73 (285)
183 2z4s_A Chromosomal replication 95.9 0.015 5.1E-07 61.5 8.2 99 44-178 131-237 (440)
184 1sxj_E Activator 1 40 kDa subu 95.8 0.016 5.6E-07 59.2 8.1 39 20-61 15-58 (354)
185 3co5_A Putative two-component 95.7 0.019 6.5E-07 50.2 6.9 44 20-63 5-51 (143)
186 3syl_A Protein CBBX; photosynt 95.4 0.012 4.2E-07 58.9 5.1 42 20-61 32-89 (309)
187 1sxj_D Activator 1 41 kDa subu 95.4 0.0047 1.6E-07 63.3 1.8 43 19-61 37-80 (353)
188 3u61_B DNA polymerase accessor 95.4 0.013 4.3E-07 59.3 5.0 41 19-61 26-70 (324)
189 1pgv_A TMD-1, tropomodulin TMD 95.3 0.019 6.4E-07 53.0 5.2 111 365-476 34-168 (197)
190 1jr3_A DNA polymerase III subu 94.8 0.059 2E-06 55.4 8.4 40 20-61 17-60 (373)
191 1pgv_A TMD-1, tropomodulin TMD 94.8 0.035 1.2E-06 51.2 5.7 59 393-451 39-108 (197)
192 3n70_A Transport activator; si 94.8 0.036 1.2E-06 48.6 5.5 44 20-63 2-48 (145)
193 2qz4_A Paraplegin; AAA+, SPG7, 94.7 0.082 2.8E-06 51.3 8.7 43 19-61 6-61 (262)
194 1hqc_A RUVB; extended AAA-ATPa 94.5 0.068 2.3E-06 53.7 7.7 43 19-61 12-60 (324)
195 1d2n_A N-ethylmaleimide-sensit 94.3 0.19 6.6E-06 49.0 10.3 43 19-61 33-86 (272)
196 1l8q_A Chromosomal replication 94.2 0.065 2.2E-06 54.0 6.7 34 28-61 23-59 (324)
197 3rfe_A Platelet glycoprotein I 93.9 0.083 2.9E-06 45.2 5.9 53 375-429 11-66 (130)
198 3pvs_A Replication-associated 93.7 0.14 4.7E-06 54.1 8.2 40 19-61 26-72 (447)
199 1sxj_A Activator 1 95 kDa subu 93.7 0.071 2.4E-06 57.6 6.2 43 19-61 39-99 (516)
200 2zan_A Vacuolar protein sortin 93.1 0.39 1.3E-05 50.6 10.6 43 19-61 134-189 (444)
201 2qp9_X Vacuolar protein sortin 93.0 0.27 9.2E-06 50.2 9.0 43 19-61 51-106 (355)
202 1sxj_C Activator 1 40 kDa subu 92.9 0.1 3.5E-06 52.9 5.6 41 18-61 24-68 (340)
203 1lv7_A FTSH; alpha/beta domain 92.6 0.14 4.8E-06 49.5 5.8 46 16-61 9-67 (257)
204 3cf0_A Transitional endoplasmi 92.5 0.23 7.8E-06 49.4 7.5 43 19-61 15-71 (301)
205 4fcw_A Chaperone protein CLPB; 92.3 0.15 5.1E-06 50.8 5.8 42 20-61 18-69 (311)
206 3uk6_A RUVB-like 2; hexameric 92.2 0.86 3E-05 46.4 11.7 43 19-62 44-93 (368)
207 3eie_A Vacuolar protein sortin 92.2 0.46 1.6E-05 47.6 9.4 43 19-61 18-73 (322)
208 3rfe_A Platelet glycoprotein I 92.0 0.17 5.9E-06 43.2 5.0 54 517-577 12-67 (130)
209 1xwi_A SKD1 protein; VPS4B, AA 91.8 0.76 2.6E-05 46.0 10.4 43 19-61 12-67 (322)
210 3vfd_A Spastin; ATPase, microt 91.8 0.61 2.1E-05 48.2 9.9 43 19-61 115-170 (389)
211 3d8b_A Fidgetin-like protein 1 91.5 0.4 1.4E-05 48.9 8.1 42 19-61 84-139 (357)
212 1ojl_A Transcriptional regulat 91.5 0.1 3.5E-06 52.1 3.5 43 20-62 3-48 (304)
213 1r6b_X CLPA protein; AAA+, N-t 90.7 0.63 2.1E-05 52.8 9.4 42 20-61 187-229 (758)
214 1g5t_A COB(I)alamin adenosyltr 89.9 0.44 1.5E-05 43.7 5.8 51 129-179 109-164 (196)
215 1rz3_A Hypothetical protein rb 89.6 0.3 1E-05 45.2 4.6 38 24-61 3-44 (201)
216 3pxg_A Negative regulator of g 88.8 0.18 6.1E-06 53.7 2.7 42 20-61 181-223 (468)
217 3bos_A Putative DNA replicatio 88.1 0.24 8.3E-06 46.9 3.0 40 19-61 28-74 (242)
218 1a5t_A Delta prime, HOLB; zinc 86.8 2.1 7.1E-05 43.0 9.2 41 138-178 107-148 (334)
219 2ce7_A Cell division protein F 85.6 1.4 4.8E-05 46.6 7.4 46 16-61 13-71 (476)
220 3c8u_A Fructokinase; YP_612366 85.3 0.63 2.2E-05 43.2 4.1 34 27-61 7-44 (208)
221 2ck3_D ATP synthase subunit be 84.4 2 6.7E-05 45.0 7.6 101 31-150 143-264 (482)
222 1qvr_A CLPB protein; coiled co 84.3 0.52 1.8E-05 54.2 3.6 42 20-61 171-213 (854)
223 3b9p_A CG5977-PA, isoform A; A 83.9 0.53 1.8E-05 46.5 3.0 44 18-61 20-76 (297)
224 2r62_A Cell division protease 83.8 0.43 1.5E-05 46.3 2.3 43 19-61 11-66 (268)
225 2qgz_A Helicase loader, putati 83.7 0.61 2.1E-05 46.4 3.4 35 27-61 136-174 (308)
226 2cbz_A Multidrug resistance-as 83.6 4.7 0.00016 38.1 9.5 48 131-178 137-189 (237)
227 3hu3_A Transitional endoplasmi 83.5 0.92 3.1E-05 48.3 4.8 42 19-61 204-260 (489)
228 2pze_A Cystic fibrosis transme 83.5 6.6 0.00022 36.9 10.4 46 131-176 140-188 (229)
229 3pxi_A Negative regulator of g 83.3 0.49 1.7E-05 53.7 2.7 42 20-61 181-223 (758)
230 1odf_A YGR205W, hypothetical 3 82.7 1 3.5E-05 44.3 4.5 20 42-61 30-53 (290)
231 3pfi_A Holliday junction ATP-d 82.6 0.67 2.3E-05 46.7 3.2 44 17-61 27-77 (338)
232 1in4_A RUVB, holliday junction 82.4 0.74 2.5E-05 46.4 3.4 42 19-61 25-73 (334)
233 2vhj_A Ntpase P4, P4; non- hyd 82.4 0.78 2.7E-05 45.6 3.4 20 42-61 122-145 (331)
234 1fx0_B ATP synthase beta chain 81.9 3 0.0001 43.9 7.7 101 31-150 155-277 (498)
235 2r44_A Uncharacterized protein 81.8 0.75 2.6E-05 46.2 3.2 41 19-61 27-68 (331)
236 1sky_E F1-ATPase, F1-ATP synth 81.2 2.5 8.6E-05 44.3 6.9 87 45-150 153-256 (473)
237 1ofh_A ATP-dependent HSL prote 81.0 0.74 2.5E-05 45.5 2.8 43 19-61 15-72 (310)
238 3vr4_D V-type sodium ATPase su 80.8 2 7E-05 44.6 6.0 91 41-150 152-259 (465)
239 1qvr_A CLPB protein; coiled co 80.7 2.4 8.1E-05 48.7 7.2 42 20-61 559-610 (854)
240 2r9v_A ATP synthase subunit al 79.7 4.6 0.00016 42.6 8.3 102 38-160 173-288 (515)
241 3gqb_B V-type ATP synthase bet 79.2 2.6 8.8E-05 43.9 6.1 93 40-150 147-262 (464)
242 4b4t_M 26S protease regulatory 78.8 2.1 7.1E-05 44.6 5.4 44 18-61 180-237 (434)
243 1uj2_A Uridine-cytidine kinase 78.8 0.92 3.1E-05 43.5 2.6 20 42-61 21-44 (252)
244 3nbx_X ATPase RAVA; AAA+ ATPas 78.7 1 3.5E-05 48.0 3.1 41 19-61 22-63 (500)
245 1g8p_A Magnesium-chelatase 38 78.7 1 3.5E-05 45.5 3.0 45 18-62 23-68 (350)
246 2pjz_A Hypothetical protein ST 78.6 9 0.00031 36.8 9.6 46 130-177 137-184 (263)
247 3ice_A Transcription terminati 77.7 0.72 2.5E-05 46.9 1.5 23 137-159 259-281 (422)
248 3t15_A Ribulose bisphosphate c 77.7 2.1 7.2E-05 42.1 4.9 19 43-61 36-58 (293)
249 2i1q_A DNA repair and recombin 77.3 4.5 0.00016 40.2 7.3 89 42-150 97-215 (322)
250 2gno_A DNA polymerase III, gam 77.3 7.9 0.00027 38.1 9.0 114 23-177 1-121 (305)
251 3upu_A ATP-dependent DNA helic 77.2 2.8 9.4E-05 44.2 5.9 32 141-175 130-162 (459)
252 2bbs_A Cystic fibrosis transme 76.9 11 0.00037 36.8 9.7 46 131-176 169-217 (290)
253 2c61_A A-type ATP synthase non 76.8 2.4 8.3E-05 44.3 5.2 92 41-150 153-260 (469)
254 3m6a_A ATP-dependent protease 75.2 6.5 0.00022 42.4 8.3 41 20-61 82-130 (543)
255 1n0w_A DNA repair protein RAD5 75.1 6 0.00021 37.1 7.3 20 43-62 24-47 (243)
256 3hr8_A Protein RECA; alpha and 75.1 3.4 0.00012 41.8 5.6 98 28-150 46-150 (356)
257 1gtv_A TMK, thymidylate kinase 75.0 1.3 4.5E-05 40.9 2.5 19 43-61 3-22 (214)
258 3tqc_A Pantothenate kinase; bi 74.4 2.7 9.1E-05 41.9 4.6 21 41-61 90-114 (321)
259 1ixz_A ATP-dependent metallopr 74.1 1.8 6.2E-05 41.4 3.2 42 19-61 16-71 (254)
260 2zr9_A Protein RECA, recombina 74.1 3.8 0.00013 41.4 5.7 100 25-150 43-150 (349)
261 3asz_A Uridine kinase; cytidin 72.5 1.7 5.8E-05 40.2 2.5 20 42-61 5-28 (211)
262 1htw_A HI0065; nucleotide-bind 72.5 1.9 6.5E-05 38.0 2.7 19 43-61 33-55 (158)
263 1zp6_A Hypothetical protein AT 72.3 1.8 6.3E-05 39.1 2.7 19 44-62 10-32 (191)
264 1v5w_A DMC1, meiotic recombina 72.3 14 0.00048 37.0 9.5 53 42-112 121-181 (343)
265 3pxi_A Negative regulator of g 72.3 3.1 0.00011 47.1 5.0 43 19-61 491-543 (758)
266 2z43_A DNA repair and recombin 72.1 7.1 0.00024 38.8 7.2 88 43-150 107-214 (324)
267 4b4t_J 26S protease regulatory 72.0 4.7 0.00016 41.3 5.8 43 19-61 148-204 (405)
268 2qe7_A ATP synthase subunit al 71.9 6.6 0.00023 41.3 7.0 106 31-159 152-274 (502)
269 2b8t_A Thymidine kinase; deoxy 71.7 1 3.5E-05 42.3 0.7 49 125-177 75-125 (223)
270 2kjq_A DNAA-related protein; s 71.3 1.7 5.7E-05 37.9 2.0 20 44-63 37-60 (149)
271 2bjv_A PSP operon transcriptio 71.0 1.6 5.4E-05 42.1 2.0 44 20-63 7-53 (265)
272 2qt1_A Nicotinamide riboside k 70.8 2.2 7.5E-05 39.3 2.8 21 42-62 20-44 (207)
273 3aez_A Pantothenate kinase; tr 70.7 2.1 7.2E-05 42.5 2.8 20 42-61 89-112 (312)
274 4gp7_A Metallophosphoesterase; 70.5 2.1 7.1E-05 38.2 2.5 20 131-150 93-112 (171)
275 3lw7_A Adenylate kinase relate 70.5 1.9 6.7E-05 38.1 2.3 32 131-163 68-100 (179)
276 2cvh_A DNA repair and recombin 70.5 7.9 0.00027 35.6 6.8 19 43-61 20-42 (220)
277 2ga8_A Hypothetical 39.9 kDa p 70.5 3.9 0.00013 41.1 4.7 40 22-61 2-46 (359)
278 1r6b_X CLPA protein; AAA+, N-t 70.3 5.6 0.00019 44.9 6.6 42 20-61 459-510 (758)
279 1u94_A RECA protein, recombina 70.0 3.9 0.00013 41.4 4.7 57 24-97 44-104 (356)
280 1fx0_A ATP synthase alpha chai 69.9 4.6 0.00016 42.6 5.2 96 41-159 164-275 (507)
281 1xp8_A RECA protein, recombina 69.6 5.7 0.00019 40.3 5.8 100 25-150 56-163 (366)
282 2jeo_A Uridine-cytidine kinase 69.6 2.2 7.5E-05 40.6 2.6 20 42-61 24-47 (245)
283 3cf2_A TER ATPase, transitiona 69.3 11 0.00038 42.4 8.5 45 19-63 204-262 (806)
284 4hlc_A DTMP kinase, thymidylat 69.0 7.4 0.00025 35.8 6.1 18 44-61 3-24 (205)
285 2x8a_A Nuclear valosin-contain 69.0 3.7 0.00013 39.8 4.2 43 19-62 10-67 (274)
286 3l0o_A Transcription terminati 68.9 10 0.00035 38.6 7.3 32 30-61 164-197 (427)
287 2f1r_A Molybdopterin-guanine d 68.9 1.7 5.9E-05 38.8 1.6 19 44-62 3-25 (171)
288 1vma_A Cell division protein F 68.6 11 0.00037 37.2 7.4 35 27-61 83-126 (306)
289 1ypw_A Transitional endoplasmi 68.6 3.1 0.00011 47.3 4.0 44 18-61 203-260 (806)
290 1xjc_A MOBB protein homolog; s 68.6 2 6.8E-05 38.3 1.9 20 42-61 3-26 (169)
291 2ck3_A ATP synthase subunit al 68.4 8.6 0.0003 40.5 6.9 110 31-159 152-282 (510)
292 3oaa_A ATP synthase subunit al 68.4 19 0.00065 37.8 9.4 109 28-159 150-274 (513)
293 1kgd_A CASK, peripheral plasma 68.4 2 6.8E-05 38.7 1.9 18 44-61 6-27 (180)
294 3tr0_A Guanylate kinase, GMP k 68.2 2.3 8E-05 38.9 2.4 18 44-61 8-29 (205)
295 1iy2_A ATP-dependent metallopr 68.2 2.7 9.1E-05 40.9 2.9 43 18-61 39-95 (278)
296 4b4t_K 26S protease regulatory 68.2 8.2 0.00028 40.0 6.7 44 18-61 171-228 (428)
297 1uf9_A TT1252 protein; P-loop, 67.9 2.6 8.7E-05 38.5 2.6 20 42-61 7-30 (203)
298 2bdt_A BH3686; alpha-beta prot 67.7 2.6 8.9E-05 38.1 2.6 18 44-61 3-24 (189)
299 3uie_A Adenylyl-sulfate kinase 67.6 2.5 8.6E-05 38.7 2.5 19 43-61 25-47 (200)
300 1um8_A ATP-dependent CLP prote 67.5 3 0.0001 42.6 3.3 43 19-61 21-94 (376)
301 1sq5_A Pantothenate kinase; P- 67.5 4.2 0.00014 40.2 4.3 20 42-61 79-102 (308)
302 1knq_A Gluconate kinase; ALFA/ 67.3 3.2 0.00011 36.9 3.0 19 43-61 8-30 (175)
303 1ye8_A Protein THEP1, hypothet 67.3 2.4 8.3E-05 38.1 2.2 38 136-175 96-137 (178)
304 3jvv_A Twitching mobility prot 66.8 0.92 3.1E-05 46.1 -0.8 47 129-179 186-232 (356)
305 3a00_A Guanylate kinase, GMP k 66.7 2 6.7E-05 38.9 1.5 18 44-61 2-23 (186)
306 3hws_A ATP-dependent CLP prote 66.5 3.5 0.00012 41.9 3.5 42 20-61 16-73 (363)
307 3hjn_A DTMP kinase, thymidylat 66.2 9.6 0.00033 34.7 6.2 16 46-61 3-22 (197)
308 2if2_A Dephospho-COA kinase; a 66.1 2.5 8.7E-05 38.7 2.2 17 45-61 3-23 (204)
309 1kag_A SKI, shikimate kinase I 65.9 2.2 7.5E-05 37.8 1.7 17 45-61 6-26 (173)
310 3kb2_A SPBC2 prophage-derived 65.7 2.7 9.3E-05 37.1 2.2 17 45-61 3-23 (173)
311 1cke_A CK, MSSA, protein (cyti 65.6 2.6 9E-05 39.3 2.2 18 44-61 6-27 (227)
312 2orw_A Thymidine kinase; TMTK, 65.3 0.67 2.3E-05 42.2 -2.0 42 134-178 71-113 (184)
313 1ly1_A Polynucleotide kinase; 64.8 3.1 0.00011 37.0 2.5 17 45-61 4-24 (181)
314 3t61_A Gluconokinase; PSI-biol 64.6 2.4 8.1E-05 38.9 1.7 18 44-61 19-40 (202)
315 1jjv_A Dephospho-COA kinase; P 64.5 3.4 0.00011 37.9 2.7 18 44-61 3-24 (206)
316 3bk7_A ABC transporter ATP-bin 64.3 23 0.00078 38.6 9.6 48 129-176 479-530 (607)
317 4eun_A Thermoresistant glucoki 64.0 2.7 9.4E-05 38.4 2.0 18 44-61 30-51 (200)
318 1w78_A FOLC bifunctional prote 63.8 5.3 0.00018 41.5 4.3 33 28-61 35-69 (422)
319 1znw_A Guanylate kinase, GMP k 63.8 3.1 0.00011 38.3 2.3 19 43-61 20-42 (207)
320 1zuh_A Shikimate kinase; alpha 63.7 2.8 9.6E-05 37.0 1.9 20 42-61 6-29 (168)
321 3vaa_A Shikimate kinase, SK; s 63.5 2.8 9.7E-05 38.3 2.0 18 44-61 26-47 (199)
322 2jaq_A Deoxyguanosine kinase; 63.2 3.1 0.00011 37.9 2.2 17 45-61 5-22 (205)
323 2j41_A Guanylate kinase; GMP, 63.1 3.2 0.00011 38.0 2.2 19 44-62 7-29 (207)
324 3lda_A DNA repair protein RAD5 63.0 11 0.00038 38.7 6.5 18 43-60 178-199 (400)
325 1qhx_A CPT, protein (chloramph 62.9 3.4 0.00012 36.8 2.3 17 45-61 8-25 (178)
326 2wsm_A Hydrogenase expression/ 62.7 3.9 0.00013 37.9 2.8 38 21-61 11-52 (221)
327 2p5t_B PEZT; postsegregational 62.4 6.5 0.00022 37.5 4.4 38 24-61 11-54 (253)
328 1tev_A UMP-CMP kinase; ploop, 62.4 3.6 0.00012 37.1 2.5 18 44-61 4-25 (196)
329 3tau_A Guanylate kinase, GMP k 62.0 4.2 0.00014 37.4 2.9 21 43-63 8-32 (208)
330 1ukz_A Uridylate kinase; trans 62.0 3.9 0.00013 37.3 2.6 20 42-61 14-37 (203)
331 2grj_A Dephospho-COA kinase; T 61.6 3.7 0.00013 37.4 2.3 20 42-61 11-34 (192)
332 1g41_A Heat shock protein HSLU 61.3 4.1 0.00014 42.4 2.9 43 19-61 15-72 (444)
333 2onk_A Molybdate/tungstate ABC 61.0 3.4 0.00011 39.3 2.0 21 42-63 24-48 (240)
334 1nks_A Adenylate kinase; therm 60.8 3.9 0.00014 36.7 2.4 18 44-61 5-23 (194)
335 3b85_A Phosphate starvation-in 60.6 3.9 0.00013 37.9 2.3 19 44-62 23-45 (208)
336 2ze6_A Isopentenyl transferase 60.6 4 0.00014 39.1 2.5 18 44-61 2-23 (253)
337 2bbw_A Adenylate kinase 4, AK4 60.2 4 0.00014 38.7 2.4 18 44-61 28-49 (246)
338 2pcj_A ABC transporter, lipopr 60.2 4 0.00014 38.3 2.3 48 130-177 149-199 (224)
339 4a74_A DNA repair and recombin 60.0 4.3 0.00015 37.8 2.6 20 42-61 24-47 (231)
340 2i3b_A HCR-ntpase, human cance 59.8 3.3 0.00011 37.6 1.7 18 45-62 3-24 (189)
341 3b9q_A Chloroplast SRP recepto 59.6 7.5 0.00026 38.2 4.4 21 42-62 99-123 (302)
342 2pbr_A DTMP kinase, thymidylat 59.5 4 0.00014 36.7 2.2 17 45-61 2-22 (195)
343 1p9r_A General secretion pathw 59.4 8.8 0.0003 39.7 5.0 37 22-61 149-189 (418)
344 2vp4_A Deoxynucleoside kinase; 59.2 3.8 0.00013 38.5 2.1 20 42-61 19-42 (230)
345 1a7j_A Phosphoribulokinase; tr 59.1 3.3 0.00011 40.6 1.6 20 42-61 4-27 (290)
346 1mv5_A LMRA, multidrug resista 59.0 4.6 0.00016 38.3 2.6 20 44-63 29-52 (243)
347 1lvg_A Guanylate kinase, GMP k 58.8 3.2 0.00011 37.9 1.4 18 44-61 5-26 (198)
348 3tif_A Uncharacterized ABC tra 58.7 4.4 0.00015 38.3 2.4 20 44-63 32-55 (235)
349 4e22_A Cytidylate kinase; P-lo 58.7 4.3 0.00015 38.8 2.3 19 43-61 27-49 (252)
350 4b4t_H 26S protease regulatory 58.6 12 0.00041 39.0 5.8 43 19-61 209-265 (467)
351 1np6_A Molybdopterin-guanine d 58.5 3.9 0.00013 36.6 1.9 19 43-61 6-28 (174)
352 1qf9_A UMP/CMP kinase, protein 58.5 4.6 0.00016 36.3 2.4 18 44-61 7-28 (194)
353 2f6r_A COA synthase, bifunctio 58.4 4.8 0.00016 39.2 2.7 20 42-61 74-97 (281)
354 1z6g_A Guanylate kinase; struc 58.3 3.8 0.00013 38.2 1.8 18 44-61 24-45 (218)
355 3p32_A Probable GTPase RV1496/ 58.3 7.7 0.00026 39.2 4.3 31 30-61 67-101 (355)
356 3llm_A ATP-dependent RNA helic 58.2 34 0.0012 31.8 8.7 49 125-179 164-219 (235)
357 1kht_A Adenylate kinase; phosp 58.2 4.4 0.00015 36.4 2.2 17 45-61 5-25 (192)
358 1ji0_A ABC transporter; ATP bi 58.2 4.5 0.00015 38.3 2.4 20 44-63 33-56 (240)
359 2bwj_A Adenylate kinase 5; pho 58.1 4.3 0.00015 36.8 2.2 18 44-61 13-34 (199)
360 3lnc_A Guanylate kinase, GMP k 58.1 3.8 0.00013 38.4 1.8 18 44-61 28-50 (231)
361 3kl4_A SRP54, signal recogniti 57.8 22 0.00077 36.7 7.7 20 42-61 96-119 (433)
362 3mfy_A V-type ATP synthase alp 57.7 30 0.001 36.9 8.6 44 44-107 228-275 (588)
363 1b0u_A Histidine permease; ABC 57.7 4.6 0.00016 38.9 2.4 20 44-63 33-56 (262)
364 3gfo_A Cobalt import ATP-bindi 57.5 4.7 0.00016 39.1 2.4 48 130-177 152-203 (275)
365 3trf_A Shikimate kinase, SK; a 57.5 3.9 0.00013 36.6 1.7 17 45-61 7-27 (185)
366 1g6h_A High-affinity branched- 57.3 4.7 0.00016 38.7 2.4 20 44-63 34-57 (257)
367 3ake_A Cytidylate kinase; CMP 57.3 4.6 0.00016 36.9 2.2 17 45-61 4-24 (208)
368 2dhr_A FTSH; AAA+ protein, hex 57.3 5.9 0.0002 42.1 3.3 45 17-62 29-87 (499)
369 2hf9_A Probable hydrogenase ni 57.2 7.6 0.00026 35.9 3.8 33 27-62 25-61 (226)
370 2d2e_A SUFC protein; ABC-ATPas 57.2 4.8 0.00017 38.4 2.4 19 44-62 30-52 (250)
371 2og2_A Putative signal recogni 57.1 9.1 0.00031 38.7 4.5 21 42-62 156-180 (359)
372 1sgw_A Putative ABC transporte 57.0 4.1 0.00014 37.9 1.8 50 130-179 142-194 (214)
373 4g1u_C Hemin import ATP-bindin 56.9 4.8 0.00017 38.8 2.4 20 44-63 38-61 (266)
374 2z0h_A DTMP kinase, thymidylat 56.9 4.7 0.00016 36.4 2.2 17 45-61 2-22 (197)
375 2yvu_A Probable adenylyl-sulfa 56.9 5.2 0.00018 35.9 2.5 19 43-61 13-35 (186)
376 2zu0_C Probable ATP-dependent 56.8 4.9 0.00017 38.8 2.4 47 131-177 174-223 (267)
377 2c95_A Adenylate kinase 1; tra 56.8 4.4 0.00015 36.6 2.0 18 44-61 10-31 (196)
378 2olj_A Amino acid ABC transpor 56.7 4.9 0.00017 38.7 2.4 47 131-177 169-218 (263)
379 3d3q_A TRNA delta(2)-isopenten 56.7 5 0.00017 40.1 2.5 19 44-62 8-30 (340)
380 1vht_A Dephospho-COA kinase; s 56.7 5.3 0.00018 36.9 2.6 18 44-61 5-26 (218)
381 2ff7_A Alpha-hemolysin translo 56.7 4.9 0.00017 38.2 2.4 20 44-63 36-59 (247)
382 2pt5_A Shikimate kinase, SK; a 56.5 5 0.00017 35.2 2.2 16 46-61 3-22 (168)
383 1vpl_A ABC transporter, ATP-bi 56.5 5 0.00017 38.5 2.4 48 130-177 155-205 (256)
384 3nrs_A Dihydrofolate:folylpoly 56.4 7.7 0.00026 40.5 4.0 40 22-61 29-72 (437)
385 1e4v_A Adenylate kinase; trans 56.4 3.7 0.00013 38.0 1.4 19 43-61 3-22 (214)
386 2pez_A Bifunctional 3'-phospho 56.3 5.4 0.00019 35.5 2.5 18 44-61 6-27 (179)
387 2ehv_A Hypothetical protein PH 56.2 5.1 0.00017 37.8 2.4 19 43-61 30-52 (251)
388 2yhs_A FTSY, cell division pro 56.2 8.2 0.00028 40.7 4.1 20 42-61 292-315 (503)
389 3e70_C DPA, signal recognition 55.8 8.5 0.00029 38.4 4.0 21 42-62 128-152 (328)
390 1zak_A Adenylate kinase; ATP:A 55.8 3.7 0.00013 38.2 1.3 19 43-61 8-27 (222)
391 2ixe_A Antigen peptide transpo 55.6 5.2 0.00018 38.7 2.4 47 130-176 165-215 (271)
392 2plr_A DTMP kinase, probable t 55.4 5.6 0.00019 36.4 2.5 18 44-61 5-26 (213)
393 2ghi_A Transport protein; mult 55.4 5.3 0.00018 38.4 2.4 20 44-63 47-70 (260)
394 1nij_A Hypothetical protein YJ 55.3 5.8 0.0002 39.4 2.7 21 42-62 3-27 (318)
395 2yz2_A Putative ABC transporte 55.2 5.3 0.00018 38.5 2.4 49 130-178 147-198 (266)
396 4b4t_L 26S protease subunit RP 55.2 17 0.00058 37.7 6.3 43 19-61 181-237 (437)
397 1gvn_B Zeta; postsegregational 55.2 11 0.00037 36.8 4.6 20 42-61 32-55 (287)
398 3cm0_A Adenylate kinase; ATP-b 55.2 5.8 0.0002 35.5 2.5 18 44-61 5-26 (186)
399 3dm5_A SRP54, signal recogniti 55.1 26 0.0009 36.3 7.7 20 42-61 99-122 (443)
400 1via_A Shikimate kinase; struc 55.1 4.4 0.00015 36.0 1.7 16 46-61 7-26 (175)
401 2rhm_A Putative kinase; P-loop 55.1 5.7 0.00019 35.7 2.4 18 44-61 6-27 (193)
402 2ihy_A ABC transporter, ATP-bi 55.0 5.4 0.00018 38.8 2.4 20 44-63 48-71 (279)
403 2wwf_A Thymidilate kinase, put 54.8 5.2 0.00018 36.6 2.2 18 44-61 11-32 (212)
404 3be4_A Adenylate kinase; malar 54.8 4.2 0.00014 37.7 1.5 19 43-61 8-27 (217)
405 2iyv_A Shikimate kinase, SK; t 54.4 4.2 0.00014 36.4 1.4 16 46-61 5-24 (184)
406 2cdn_A Adenylate kinase; phosp 54.3 5.5 0.00019 36.3 2.2 17 45-61 22-42 (201)
407 4b4t_I 26S protease regulatory 54.3 14 0.00046 38.2 5.3 43 19-61 182-238 (437)
408 2qi9_C Vitamin B12 import ATP- 54.0 5.8 0.0002 37.8 2.4 20 44-63 27-50 (249)
409 2fz4_A DNA repair protein RAD2 53.9 61 0.0021 30.2 9.6 28 136-163 189-217 (237)
410 1s96_A Guanylate kinase, GMP k 53.7 5.4 0.00019 37.2 2.1 21 43-63 16-40 (219)
411 3ney_A 55 kDa erythrocyte memb 53.6 5.3 0.00018 36.6 1.9 21 42-62 18-42 (197)
412 1nn5_A Similar to deoxythymidy 53.6 5.6 0.00019 36.5 2.2 18 44-61 10-31 (215)
413 3iij_A Coilin-interacting nucl 53.5 4.6 0.00016 36.0 1.5 18 44-61 12-33 (180)
414 2nq2_C Hypothetical ABC transp 53.5 6 0.0002 37.8 2.4 48 130-177 137-188 (253)
415 1q3t_A Cytidylate kinase; nucl 53.5 5.4 0.00019 37.5 2.1 20 42-61 15-38 (236)
416 1ex7_A Guanylate kinase; subst 53.3 5.2 0.00018 36.2 1.8 17 45-61 3-23 (186)
417 1tq4_A IIGP1, interferon-induc 53.1 5.5 0.00019 41.1 2.2 21 42-62 68-92 (413)
418 1o5z_A Folylpolyglutamate synt 52.9 7.2 0.00025 40.8 3.1 20 42-61 51-72 (442)
419 2vli_A Antibiotic resistance p 52.6 5.5 0.00019 35.5 1.9 18 44-61 6-27 (183)
420 1m7g_A Adenylylsulfate kinase; 52.5 6.7 0.00023 36.1 2.5 18 44-61 26-47 (211)
421 1y63_A LMAJ004144AAA protein; 52.5 6.3 0.00021 35.4 2.2 18 44-61 11-32 (184)
422 1e6c_A Shikimate kinase; phosp 52.4 5.2 0.00018 35.3 1.7 17 45-61 4-24 (173)
423 3k1j_A LON protease, ATP-depen 52.2 9.2 0.00032 41.8 3.9 40 19-63 41-84 (604)
424 3kta_A Chromosome segregation 52.1 6.6 0.00023 35.0 2.4 17 45-61 28-48 (182)
425 3nh6_A ATP-binding cassette SU 52.1 5.9 0.0002 39.0 2.2 20 44-63 81-104 (306)
426 2c9o_A RUVB-like 1; hexameric 51.9 9.6 0.00033 40.0 3.9 43 19-61 37-85 (456)
427 2eyu_A Twitching motility prot 51.5 6.9 0.00024 37.6 2.5 19 43-61 25-47 (261)
428 1jbw_A Folylpolyglutamate synt 51.3 6.7 0.00023 40.8 2.5 37 25-61 19-59 (428)
429 1svm_A Large T antigen; AAA+ f 51.1 10 0.00035 38.6 3.8 19 43-61 169-191 (377)
430 1oix_A RAS-related protein RAB 50.5 8.1 0.00028 34.8 2.7 22 42-63 28-53 (191)
431 4edh_A DTMP kinase, thymidylat 50.5 32 0.0011 31.7 6.8 18 44-61 7-28 (213)
432 2qor_A Guanylate kinase; phosp 50.4 5.1 0.00018 36.7 1.3 18 44-61 13-34 (204)
433 2v54_A DTMP kinase, thymidylat 50.4 7 0.00024 35.5 2.2 17 45-61 6-26 (204)
434 1zj6_A ADP-ribosylation factor 50.1 9.8 0.00033 33.9 3.2 31 29-63 6-40 (187)
435 3tlx_A Adenylate kinase 2; str 50.0 11 0.00036 35.7 3.6 19 43-61 29-51 (243)
436 2v9p_A Replication protein E1; 50.0 6.9 0.00024 38.5 2.2 19 43-61 126-148 (305)
437 1rj9_A FTSY, signal recognitio 49.7 7.4 0.00025 38.3 2.4 19 43-61 102-124 (304)
438 2ged_A SR-beta, signal recogni 49.3 7.8 0.00027 34.7 2.4 21 43-63 48-72 (193)
439 1moz_A ARL1, ADP-ribosylation 48.5 8.9 0.0003 33.8 2.6 21 43-63 21-42 (183)
440 1zu4_A FTSY; GTPase, signal re 48.5 16 0.00055 36.2 4.7 20 42-61 104-127 (320)
441 2h17_A ADP-ribosylation factor 48.4 9.9 0.00034 33.6 2.9 21 43-63 24-45 (181)
442 2dyk_A GTP-binding protein; GT 48.3 9.6 0.00033 32.7 2.8 19 45-63 3-25 (161)
443 3fb4_A Adenylate kinase; psych 48.1 7.9 0.00027 35.6 2.2 16 46-61 3-22 (216)
444 3sop_A Neuronal-specific septi 47.9 7.7 0.00026 37.4 2.2 19 45-63 4-26 (270)
445 2vos_A Folylpolyglutamate synt 47.9 8.1 0.00028 40.9 2.5 20 42-61 63-84 (487)
446 3a4m_A L-seryl-tRNA(SEC) kinas 47.7 8.7 0.0003 36.7 2.6 18 44-61 5-26 (260)
447 2ocp_A DGK, deoxyguanosine kin 47.6 8.7 0.0003 36.2 2.5 19 44-62 3-25 (241)
448 2wji_A Ferrous iron transport 47.1 11 0.00039 32.7 3.1 20 44-63 4-27 (165)
449 1zd8_A GTP:AMP phosphotransfer 46.8 8.3 0.00028 35.9 2.2 17 45-61 9-29 (227)
450 4gzl_A RAS-related C3 botulinu 46.7 6.7 0.00023 35.8 1.5 38 23-63 13-54 (204)
451 2w0m_A SSO2452; RECA, SSPF, un 46.6 9 0.00031 35.5 2.4 18 44-61 24-45 (235)
452 3dl0_A Adenylate kinase; phosp 46.2 8.8 0.0003 35.3 2.2 16 46-61 3-22 (216)
453 1aky_A Adenylate kinase; ATP:A 46.1 8.8 0.0003 35.5 2.2 17 45-61 6-26 (220)
454 2wjg_A FEOB, ferrous iron tran 46.1 14 0.00048 32.7 3.6 22 42-63 6-31 (188)
455 3vr4_A V-type sodium ATPase ca 46.0 15 0.00052 39.2 4.2 55 30-106 221-279 (600)
456 2gza_A Type IV secretion syste 45.9 12 0.00042 37.8 3.4 36 130-167 243-278 (361)
457 2f9l_A RAB11B, member RAS onco 45.8 11 0.00037 34.1 2.7 21 43-63 5-29 (199)
458 3fwy_A Light-independent proto 45.2 10 0.00035 37.5 2.6 20 42-61 47-70 (314)
459 3io5_A Recombination and repai 45.0 29 0.001 34.2 5.8 83 44-150 29-122 (333)
460 3r20_A Cytidylate kinase; stru 45.0 9.8 0.00034 35.8 2.3 18 44-61 10-31 (233)
461 3def_A T7I23.11 protein; chlor 44.7 19 0.00065 34.3 4.5 33 30-63 24-60 (262)
462 1lw7_A Transcriptional regulat 44.6 9 0.00031 38.8 2.2 21 43-63 170-194 (365)
463 3tui_C Methionine import ATP-b 44.0 10 0.00035 38.3 2.4 47 130-176 172-222 (366)
464 3gmt_A Adenylate kinase; ssgci 44.0 6.8 0.00023 36.8 1.0 20 42-61 10-30 (230)
465 1ega_A Protein (GTP-binding pr 43.9 12 0.0004 36.8 2.8 22 42-63 7-32 (301)
466 2zej_A Dardarin, leucine-rich 43.8 10 0.00035 33.7 2.2 17 46-62 5-25 (184)
467 2nzj_A GTP-binding protein REM 43.8 11 0.00037 32.9 2.4 20 44-63 5-28 (175)
468 1p5z_B DCK, deoxycytidine kina 43.7 8.7 0.0003 36.8 1.8 20 42-61 23-46 (263)
469 3a8t_A Adenylate isopentenyltr 43.4 11 0.00036 37.7 2.4 21 43-63 40-64 (339)
470 3th5_A RAS-related C3 botulinu 49.2 5 0.00017 36.5 0.0 39 25-63 15-54 (204)
471 1u8z_A RAS-related protein RAL 43.1 11 0.00037 32.5 2.2 20 44-63 5-28 (168)
472 1tue_A Replication protein E1; 43.0 17 0.00058 33.4 3.5 34 26-61 43-80 (212)
473 3q5d_A Atlastin-1; G protein, 43.0 20 0.00067 37.4 4.5 35 27-61 49-89 (447)
474 3exa_A TRNA delta(2)-isopenten 43.0 12 0.0004 37.0 2.6 20 43-62 3-26 (322)
475 2erx_A GTP-binding protein DI- 42.8 12 0.00041 32.4 2.5 18 46-63 6-27 (172)
476 1c1y_A RAS-related protein RAP 42.8 11 0.00038 32.4 2.3 19 45-63 5-27 (167)
477 3thx_A DNA mismatch repair pro 42.6 18 0.00062 41.5 4.4 17 43-59 662-682 (934)
478 1z2a_A RAS-related protein RAB 42.5 11 0.00039 32.4 2.3 20 44-63 6-29 (168)
479 1fzq_A ADP-ribosylation factor 42.5 16 0.00055 32.3 3.4 21 43-63 16-40 (181)
480 2qm8_A GTPase/ATPase; G protei 42.2 19 0.00066 35.9 4.2 20 42-61 54-77 (337)
481 1pui_A ENGB, probable GTP-bind 42.2 7.9 0.00027 35.3 1.2 21 43-63 26-50 (210)
482 2lkc_A Translation initiation 42.1 13 0.00043 32.6 2.5 21 43-63 8-32 (178)
483 2obl_A ESCN; ATPase, hydrolase 42.0 11 0.00036 38.0 2.2 20 44-63 72-95 (347)
484 1cr0_A DNA primase/helicase; R 42.0 11 0.00038 36.7 2.4 20 44-63 36-59 (296)
485 2ce2_X GTPase HRAS; signaling 41.9 11 0.00039 32.2 2.2 18 46-63 6-27 (166)
486 3crm_A TRNA delta(2)-isopenten 41.8 12 0.00041 37.1 2.5 18 44-61 6-27 (323)
487 3cmu_A Protein RECA, recombina 41.6 18 0.00061 45.0 4.4 95 29-149 1413-1515(2050)
488 3f9v_A Minichromosome maintena 41.4 6.9 0.00023 42.7 0.7 45 19-63 295-351 (595)
489 1nlf_A Regulatory protein REPA 41.4 12 0.0004 36.2 2.4 18 44-61 31-52 (279)
490 3nwj_A ATSK2; P loop, shikimat 41.3 9.6 0.00033 36.3 1.7 17 45-61 50-70 (250)
491 1kao_A RAP2A; GTP-binding prot 41.2 12 0.00041 32.1 2.2 19 45-63 5-27 (167)
492 2gj8_A MNME, tRNA modification 41.1 12 0.0004 32.9 2.2 19 45-63 6-28 (172)
493 1z08_A RAS-related protein RAB 41.1 12 0.00042 32.3 2.3 20 44-63 7-30 (170)
494 2px0_A Flagellar biosynthesis 41.0 12 0.00041 36.6 2.4 19 43-61 105-127 (296)
495 1z0j_A RAB-22, RAS-related pro 40.9 12 0.00041 32.3 2.2 20 44-63 7-30 (170)
496 2p67_A LAO/AO transport system 40.9 21 0.00071 35.7 4.2 20 42-61 55-78 (341)
497 1ek0_A Protein (GTP-binding pr 40.8 12 0.00042 32.2 2.2 18 46-63 6-27 (170)
498 3q72_A GTP-binding protein RAD 40.7 12 0.00041 32.2 2.2 18 46-63 5-26 (166)
499 2oap_1 GSPE-2, type II secreti 40.7 15 0.00051 39.1 3.2 16 46-61 263-282 (511)
500 2xb4_A Adenylate kinase; ATP-b 40.6 12 0.00041 34.7 2.2 17 45-61 5-22 (223)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=1.3e-33 Score=312.43 Aligned_cols=252 Identities=12% Similarity=0.114 Sum_probs=191.1
Q ss_pred cccchhhcHHHHHHHHhcCCCCceEEEEEec----chhhHHHHHhc--CCCccccCCCCccccCCceeeccCCCcceEeC
Q 037018 20 SSKTVKVKVKAVLVWLFMLDSMWLQFLTAVA----YKTAFVADIYN--NNVDLSAMNPKLRVPKRFINKAFPVAFPVDVN 93 (663)
Q Consensus 20 ~~~G~~~~~~~i~~~L~~~~~~~~~vi~i~G----GKTtla~~v~~--~~~~~~~~~~~~~~~~~F~~~~~~~~~~v~vs 93 (663)
..+||+.++++|.++|.....+..+||+|+| ||||||+++|+ |. +++.+|+.++| |+++
T Consensus 129 ~~~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~----------~~~~~F~~~~w-----v~vs 193 (549)
T 2a5y_B 129 TCYIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQ----------LIGINYDSIVW-----LKDS 193 (549)
T ss_dssp CSCCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSS----------TBTTTBSEEEE-----EECC
T ss_pred ccCCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhH----------HHhccCCcEEE-----EEEC
Confidence 3369999999999999876444689999999 99999999998 67 89999999999 9999
Q ss_pred CCc--chhHHHHHHHHHHHhCCCCC---cchhhhh-HhhHHHHHHHHhhcCC-cEEEEEeCCCCChhhHHHHHhhCCCCC
Q 037018 94 CAC--NAQLNHILDDIIKSVMPPSR---VNVIISE-DYKLKTIILRDYLTNK-KDFIVLDDVFDDREIWNDLEKFLPDNQ 166 (663)
Q Consensus 94 ~~~--~~~~~~l~~~i~~~l~~~~~---~~~~~~~-~~~l~~~~l~~~L~~k-r~LlVLDdv~~~~~~~~~l~~~~~~~~ 166 (663)
+.+ + ..++++.|+.+++.... ....+.. .+.+ ...+++.|++| ||||||||||+ ..++ .+.. .
T Consensus 194 ~~~~~~--~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~l-~~~l~~~L~~~kr~LlVLDdv~~-~~~~-~~~~-----~ 263 (549)
T 2a5y_B 194 GTAPKS--TFDLFTDILLMLKSEDDLLNFPSVEHVTSVVL-KRMICNALIDRPNTLFVFDDVVQ-EETI-RWAQ-----E 263 (549)
T ss_dssp CCSTTH--HHHHHHHHHHHHTTTSCCTTCCCCTTCCHHHH-HHHHHHHHTTSTTEEEEEEEECC-HHHH-HHHH-----H
T ss_pred CCCCCC--HHHHHHHHHHHHhcCcccccccccccccHHHH-HHHHHHHHcCCCcEEEEEECCCC-chhh-cccc-----c
Confidence 985 7 99999999999987532 1112222 4667 88999999996 99999999999 6654 2221 1
Q ss_pred CCceEEEEEeCCCCC-------ceEecc---------------------------------ccccchhHHHHHhhccccC
Q 037018 167 NGSRVLILVTDPFLL-------TSFELE---------------------------------HGEKIRLNSALVGGPLIRI 206 (663)
Q Consensus 167 ~gskIiiT~r~~~~~-------~~~~l~---------------------------------~~~~iPlal~~~g~~L~~~ 206 (663)
+|||||||||++.++ .+|+++ .+.++|||++++|+.|+..
T Consensus 264 ~gs~ilvTTR~~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~ 343 (549)
T 2a5y_B 264 LRLRCLVTTRDVEISNAASQTCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNPATLMMFFKSCEPK 343 (549)
T ss_dssp TTCEEEEEESBGGGGGGCCSCEEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSS
T ss_pred CCCEEEEEcCCHHHHHHcCCCCeEEECCCCCHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhCCChHHHHHHHHHhccc
Confidence 699999999975432 356666 1222399999999999833
Q ss_pred ChhhHHHHHhhcCCCCCCCCcCCCChhhhhhhc-ceeCCCChhhHHHHh-----------hhcccCCCceechHHHHHHH
Q 037018 207 KYEGWQFFILHYGSMPLGSYFQGEAMPTIWRHI-YSVMELPFHLKVCCL-----------YLCVFRPSIEISTRQLYQLW 274 (663)
Q Consensus 207 ~~~~W~~~~~~~~~~~l~~~~~~~~~~~i~~~l-~sy~~L~~~~k~cfl-----------~~a~Fp~~~~i~~~~Li~~W 274 (663)
. .+|...+.. ........++...+ +||+.||.++|.||+ |||+||+++.|+ |..|
T Consensus 344 ~-w~~~~~l~~--------~l~~~~~~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w 410 (549)
T 2a5y_B 344 T-FEKMAQLNN--------KLESRGLVGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLW 410 (549)
T ss_dssp S-HHHHHHHHH--------HHHHHCSSTTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHH
T ss_pred h-HHHHHHhHH--------HhhcccHHHHHHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee----eeee
Confidence 2 333333333 21111124564455 999999999999999 999999999999 8999
Q ss_pred HHc--CC-C----C---------------------CCCCccceEEcCHHHHHHHHHhcccCce
Q 037018 275 VAE--VS-K----R---------------------RAGGTIKACYVPGFVYTSLFFMAGMMEF 309 (663)
Q Consensus 275 i~~--g~-~----g---------------------~~~~~~~~~~mhdll~dl~~~~~~~~~~ 309 (663)
+|+ || . + ...+...+|+|||++|++|+.++.++++
T Consensus 411 ~a~~~G~i~~~~~~~~~~~~~~~l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~~ 473 (549)
T 2a5y_B 411 SCVIPVDICSNEEEQLDDEVADRLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQTI 473 (549)
T ss_dssp HHHSCC-------CCCTHHHHHHHHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTHHH
T ss_pred eeeccceeccCCCCCCHHHHHHHHHHHHHcCCeeEecCCCceEEEeChHHHHHHHHHHHHHHH
Confidence 999 88 3 1 1112456899999999999999887643
No 2
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.95 E-value=6.4e-27 Score=255.63 Aligned_cols=311 Identities=19% Similarity=0.137 Sum_probs=254.3
Q ss_pred EEEEecccccccccccCCCcccEEEeecCccccccccchhHHhcCCCcccEEEecCCcCccc-CccCCCCCCcCeEeccC
Q 037018 326 CFILEDLIDEFISLEHSDMYLQSFLNHTLESDRLALIDCENFCKKFKHLRVLNLGSAILYQY-PPGLENLFHLKYLKLNI 404 (663)
Q Consensus 326 lsi~~~~~~~~~~~~~~~~~lr~L~l~~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~l~~l-p~~~~~l~~L~~L~L~~ 404 (663)
+......+..++ ....++++.|.+.++....+ .+..|.++++|++|++++|.++.+ |..++++++|++|+|++
T Consensus 16 v~c~~~~l~~ip--~~~~~~l~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~ 89 (477)
T 2id5_A 16 VLCHRKRFVAVP--EGIPTETRLLDLGKNRIKTL----NQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRS 89 (477)
T ss_dssp EECCSCCCSSCC--SCCCTTCSEEECCSSCCCEE----CTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred EEeCCCCcCcCC--CCCCCCCcEEECCCCccceE----CHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCC
Confidence 333333334444 33377899999999887531 133448999999999999999855 77899999999999999
Q ss_pred CCCccchh-hhcccccccEeeccCCccccc-chhhhcCcCCcEEEccCCCCCCCCCCCcCCCCCCcEeeCcCCC-C-CCh
Q 037018 405 PSLNCLPS-LLCTLLNLQTLEMPASYIDHS-PEGIWMMQKLMHLNFGSINLPAPPKNYSSSLKNLIFISSLNPS-S-CTP 480 (663)
Q Consensus 405 ~~i~~lp~-~i~~L~~L~~L~L~~~~l~~l-p~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~-~~~ 480 (663)
|.++.+|. .++++++|++|++++|.+..+ |..+..+++|++|++++|.+....+..+..+++|+.|++.++. . ..+
T Consensus 90 n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 169 (477)
T 2id5_A 90 NRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPT 169 (477)
T ss_dssp SCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCH
T ss_pred CcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccCh
Confidence 99998885 478999999999999977766 5568999999999999666666667789999999999999998 4 444
Q ss_pred hhcCCCCCccEEEeecCCCccccchhhhhcCCCCCCEEEEeecCccccccccccccccCCCCceEEEEecccCCCCChhh
Q 037018 481 DILGRLPNVQTLRISGDLSHYHSGVSKSLCELHKLECLQLVHEGRMWQLSRMVLSEYQFPPCLTQLSLSNTQLMEDPMPA 560 (663)
Q Consensus 481 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~lp~~~~~l~~~l~~L~~L~L~~~~l~~~~~~~ 560 (663)
..+..+++|+.|++++| ......+..+..+++|+.|++++|..+..+|. .... ..+|+.|++++|.++......
T Consensus 170 ~~l~~l~~L~~L~l~~n--~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~---~~~~-~~~L~~L~l~~n~l~~~~~~~ 243 (477)
T 2id5_A 170 EALSHLHGLIVLRLRHL--NINAIRDYSFKRLYRLKVLEISHWPYLDTMTP---NCLY-GLNLTSLSITHCNLTAVPYLA 243 (477)
T ss_dssp HHHTTCTTCCEEEEESC--CCCEECTTCSCSCTTCCEEEEECCTTCCEECT---TTTT-TCCCSEEEEESSCCCSCCHHH
T ss_pred hHhcccCCCcEEeCCCC--cCcEeChhhcccCcccceeeCCCCccccccCc---cccc-CccccEEECcCCcccccCHHH
Confidence 56899999999999998 45555556788999999999998777888887 6666 779999999999998777778
Q ss_pred hcCCCCCcEEEeecCCCCCceeeecCCCCCCcccEEEccCCCCccccccccccccccceEEeecCCCCCCCccccCCCCC
Q 037018 561 LEKLPHLEVLKLKQNSYSERKLACVGSGSFPQLKILHLKSMLWLEEWTMGAGAMPKLESLIVNPCAYLRKLPEELWCIKS 640 (663)
Q Consensus 561 l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~l~~l~s 640 (663)
+..+++|+.|+|++|.+.+..... +..+++|+.|+|++|......+..+..+++|+.|++++|......+..+..+++
T Consensus 244 ~~~l~~L~~L~Ls~n~l~~~~~~~--~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 321 (477)
T 2id5_A 244 VRHLVYLRFLNLSYNPISTIEGSM--LHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGN 321 (477)
T ss_dssp HTTCTTCCEEECCSSCCCEECTTS--CTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGG
T ss_pred hcCccccCeeECCCCcCCccChhh--ccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcc
Confidence 999999999999999987544333 678999999999997544445678899999999999999755544446788999
Q ss_pred CCEEEecCCC
Q 037018 641 LCKLELHWPQ 650 (663)
Q Consensus 641 L~~L~l~~c~ 650 (663)
|+.|+++++|
T Consensus 322 L~~L~l~~N~ 331 (477)
T 2id5_A 322 LETLILDSNP 331 (477)
T ss_dssp CCEEECCSSC
T ss_pred cCEEEccCCC
Confidence 9999999866
No 3
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.95 E-value=4.1e-27 Score=271.84 Aligned_cols=317 Identities=16% Similarity=0.132 Sum_probs=211.3
Q ss_pred CceeEEEEEecccccccccccC-CCcccEEEeecCccccccccch-hHHhcCCCcccEEEecCCcCc-ccCcc-------
Q 037018 321 ANVKRCFILEDLIDEFISLEHS-DMYLQSFLNHTLESDRLALIDC-ENFCKKFKHLRVLNLGSAILY-QYPPG------- 390 (663)
Q Consensus 321 ~~~r~lsi~~~~~~~~~~~~~~-~~~lr~L~l~~~~~~~~~~~~l-~~~~~~l~~Lr~L~L~~~~l~-~lp~~------- 390 (663)
..++++.+..+.+....+.... +++++.|.+.++...+ .+ ...+..+++|++|++++|.+. .+|..
T Consensus 294 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~----~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~ 369 (768)
T 3rgz_A 294 DTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSG----ELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSAS 369 (768)
T ss_dssp TTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEE----ECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTT
T ss_pred CcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccC----cCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcC
Confidence 4566666666554432211112 5666666666665431 22 222255555555555555544 33433
Q ss_pred ------------------CCC--CCCcCeEeccCCCCc-cchhhhcccccccEeeccCCccc-ccchhhhcCcCCcEEEc
Q 037018 391 ------------------LEN--LFHLKYLKLNIPSLN-CLPSLLCTLLNLQTLEMPASYID-HSPEGIWMMQKLMHLNF 448 (663)
Q Consensus 391 ------------------~~~--l~~L~~L~L~~~~i~-~lp~~i~~L~~L~~L~L~~~~l~-~lp~~l~~l~~L~~L~l 448 (663)
+.. +++|++|++++|.+. .+|..++++++|++|++++|.+. .+|..+..+++|++|++
T Consensus 370 L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 449 (768)
T 3rgz_A 370 LLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKL 449 (768)
T ss_dssp CSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEEC
T ss_pred CcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEEC
Confidence 333 455666666666665 56667777777777777777543 56667777777777777
Q ss_pred cCCCCCCCCCCCcCCCCCCcEeeCcCCC--CCChhhcCCCCCccEEEeecCCCccccchhhhhcCCCCCCEEEEeecCcc
Q 037018 449 GSINLPAPPKNYSSSLKNLIFISSLNPS--SCTPDILGRLPNVQTLRISGDLSHYHSGVSKSLCELHKLECLQLVHEGRM 526 (663)
Q Consensus 449 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l 526 (663)
++|.....+|..+..+++|+.|++.+|. +..+..++.+++|+.|++++| ...+..|..+..+++|+.|++++ +.+
T Consensus 450 ~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N--~l~~~~p~~~~~l~~L~~L~L~~-N~l 526 (768)
T 3rgz_A 450 WLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNN--RLTGEIPKWIGRLENLAILKLSN-NSF 526 (768)
T ss_dssp CSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSS--CCCSCCCGGGGGCTTCCEEECCS-SCC
T ss_pred CCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCC--ccCCcCChHHhcCCCCCEEECCC-Ccc
Confidence 7555566777777777777777777776 466677777777777777777 45556677777777777777776 444
Q ss_pred c-cccccccccccCCCCceEEEEecccCCCCChh----------------------------------------------
Q 037018 527 W-QLSRMVLSEYQFPPCLTQLSLSNTQLMEDPMP---------------------------------------------- 559 (663)
Q Consensus 527 ~-~lp~~~~~l~~~l~~L~~L~L~~~~l~~~~~~---------------------------------------------- 559 (663)
. .+|. .+.. +++|+.|++++|.+.+..+.
T Consensus 527 ~~~~p~---~l~~-l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 602 (768)
T 3rgz_A 527 SGNIPA---ELGD-CRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSE 602 (768)
T ss_dssp EEECCG---GGGG-CTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGG
T ss_pred cCcCCH---HHcC-CCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccch
Confidence 3 6776 6777 77777777777765433322
Q ss_pred ------------------------hhcCCCCCcEEEeecCCCCCceeeecCCCCCCcccEEEccCCCCcccccccccccc
Q 037018 560 ------------------------ALEKLPHLEVLKLKQNSYSERKLACVGSGSFPQLKILHLKSMLWLEEWTMGAGAMP 615 (663)
Q Consensus 560 ------------------------~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~l~ 615 (663)
.++.+++|+.|++++|.+++..+.. ++.+++|+.|+|++|.....+|..++.++
T Consensus 603 ~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~--l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~ 680 (768)
T 3rgz_A 603 QLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKE--IGSMPYLFILNLGHNDISGSIPDEVGDLR 680 (768)
T ss_dssp GGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGG--GGGCTTCCEEECCSSCCCSCCCGGGGGCT
T ss_pred hhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHH--HhccccCCEEeCcCCccCCCCChHHhCCC
Confidence 1233567778888888777766654 57788888888888655557888888888
Q ss_pred ccceEEeecCCCCCCCccccCCCCCCCEEEecCCC
Q 037018 616 KLESLIVNPCAYLRKLPEELWCIKSLCKLELHWPQ 650 (663)
Q Consensus 616 ~L~~L~l~~c~~l~~l~~~l~~l~sL~~L~l~~c~ 650 (663)
+|+.|++++|.....+|..+..+++|+.|++++|+
T Consensus 681 ~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~ 715 (768)
T 3rgz_A 681 GLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNN 715 (768)
T ss_dssp TCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSE
T ss_pred CCCEEECCCCcccCcCChHHhCCCCCCEEECcCCc
Confidence 88888888888777788888888888888888875
No 4
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.95 E-value=5.2e-26 Score=237.69 Aligned_cols=300 Identities=16% Similarity=0.184 Sum_probs=245.7
Q ss_pred CCCceeEEEEEecccccccccccC-CCcccEEEeecCccccccccchhHHhcCCCcccEEEecCCcCcccCccCCCCCCc
Q 037018 319 TLANVKRCFILEDLIDEFISLEHS-DMYLQSFLNHTLESDRLALIDCENFCKKFKHLRVLNLGSAILYQYPPGLENLFHL 397 (663)
Q Consensus 319 ~~~~~r~lsi~~~~~~~~~~~~~~-~~~lr~L~l~~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~l~~lp~~~~~l~~L 397 (663)
....++++.+.++.+..++. .. +++++.|.+.++... .++.+ ..+++|++|++++|.++.++ .+..+++|
T Consensus 42 ~l~~L~~L~l~~~~i~~~~~--~~~~~~L~~L~l~~n~i~-----~~~~~-~~l~~L~~L~L~~n~i~~~~-~~~~l~~L 112 (347)
T 4fmz_A 42 ELESITKLVVAGEKVASIQG--IEYLTNLEYLNLNGNQIT-----DISPL-SNLVKLTNLYIGTNKITDIS-ALQNLTNL 112 (347)
T ss_dssp HHTTCSEEECCSSCCCCCTT--GGGCTTCCEEECCSSCCC-----CCGGG-TTCTTCCEEECCSSCCCCCG-GGTTCTTC
T ss_pred hcccccEEEEeCCccccchh--hhhcCCccEEEccCCccc-----cchhh-hcCCcCCEEEccCCcccCch-HHcCCCcC
Confidence 35678899999887766652 22 899999999998765 34444 99999999999999988765 68899999
Q ss_pred CeEeccCCCCccchhhhcccccccEeeccCC-cccccchhhhcCcCCcEEEccCCCCCCCCCCCcCCCCCCcEeeCcCCC
Q 037018 398 KYLKLNIPSLNCLPSLLCTLLNLQTLEMPAS-YIDHSPEGIWMMQKLMHLNFGSINLPAPPKNYSSSLKNLIFISSLNPS 476 (663)
Q Consensus 398 ~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~-~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 476 (663)
++|++++|.+..+|. +..+++|++|++++| .+..++ .+..+++|++|+++ ++.....+. +..+++|+.|++.++.
T Consensus 113 ~~L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~-~~~~~~~~~-~~~l~~L~~L~l~~n~ 188 (347)
T 4fmz_A 113 RELYLNEDNISDISP-LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVT-ESKVKDVTP-IANLTDLYSLSLNYNQ 188 (347)
T ss_dssp SEEECTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECC-SSCCCCCGG-GGGCTTCSEEECTTSC
T ss_pred CEEECcCCcccCchh-hccCCceeEEECCCCCCccccc-chhhCCCCcEEEec-CCCcCCchh-hccCCCCCEEEccCCc
Confidence 999999999998886 889999999999999 555554 58999999999999 554444443 8899999999999998
Q ss_pred -CCChhhcCCCCCccEEEeecCCCccccchhhhhcCCCCCCEEEEeecCccccccccccccccCCCCceEEEEecccCCC
Q 037018 477 -SCTPDILGRLPNVQTLRISGDLSHYHSGVSKSLCELHKLECLQLVHEGRMWQLSRMVLSEYQFPPCLTQLSLSNTQLME 555 (663)
Q Consensus 477 -~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~lp~~~~~l~~~l~~L~~L~L~~~~l~~ 555 (663)
...+. +..+++|+.|++++|. ... .+. +..+++|++|++++ +.++.+| .+.. +++|+.|++++|.+..
T Consensus 189 l~~~~~-~~~l~~L~~L~l~~n~--l~~-~~~-~~~~~~L~~L~l~~-n~l~~~~----~~~~-l~~L~~L~l~~n~l~~ 257 (347)
T 4fmz_A 189 IEDISP-LASLTSLHYFTAYVNQ--ITD-ITP-VANMTRLNSLKIGN-NKITDLS----PLAN-LSQLTWLEIGTNQISD 257 (347)
T ss_dssp CCCCGG-GGGCTTCCEEECCSSC--CCC-CGG-GGGCTTCCEEECCS-SCCCCCG----GGTT-CTTCCEEECCSSCCCC
T ss_pred cccccc-ccCCCccceeecccCC--CCC-Cch-hhcCCcCCEEEccC-CccCCCc----chhc-CCCCCEEECCCCccCC
Confidence 44443 8889999999999983 332 222 77899999999997 7888777 4666 9999999999998765
Q ss_pred CChhhhcCCCCCcEEEeecCCCCCceeeecCCCCCCcccEEEccCCCCccccccccccccccceEEeecCCCCCCCcccc
Q 037018 556 DPMPALEKLPHLEVLKLKQNSYSERKLACVGSGSFPQLKILHLKSMLWLEEWTMGAGAMPKLESLIVNPCAYLRKLPEEL 635 (663)
Q Consensus 556 ~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~l 635 (663)
. ..+..+++|+.|++++|.+.+.. . +..+++|+.|++++|......+..+..+++|+.|++++|+.....| +
T Consensus 258 ~--~~~~~l~~L~~L~l~~n~l~~~~--~--~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~ 329 (347)
T 4fmz_A 258 I--NAVKDLTKLKMLNVGSNQISDIS--V--LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--L 329 (347)
T ss_dssp C--GGGTTCTTCCEEECCSSCCCCCG--G--GGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--G
T ss_pred C--hhHhcCCCcCEEEccCCccCCCh--h--hcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--h
Confidence 3 57899999999999999887742 1 5789999999999986555666778899999999999998655434 7
Q ss_pred CCCCCCCEEEecCCC
Q 037018 636 WCIKSLCKLELHWPQ 650 (663)
Q Consensus 636 ~~l~sL~~L~l~~c~ 650 (663)
..+++|+.|++++|+
T Consensus 330 ~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 330 ASLSKMDSADFANQV 344 (347)
T ss_dssp GGCTTCSEESSSCC-
T ss_pred hhhhccceeehhhhc
Confidence 889999999999997
No 5
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.95 E-value=1.6e-26 Score=250.92 Aligned_cols=319 Identities=18% Similarity=0.131 Sum_probs=241.2
Q ss_pred CCCceeEEEEEecccccccccccC-CCcccEEEeecCccccccccch-hHHhcCCCcccEEEecCCcCcc-cCccCCCCC
Q 037018 319 TLANVKRCFILEDLIDEFISLEHS-DMYLQSFLNHTLESDRLALIDC-ENFCKKFKHLRVLNLGSAILYQ-YPPGLENLF 395 (663)
Q Consensus 319 ~~~~~r~lsi~~~~~~~~~~~~~~-~~~lr~L~l~~~~~~~~~~~~l-~~~~~~l~~Lr~L~L~~~~l~~-lp~~~~~l~ 395 (663)
.+.+++++.+..+.+....+.... +++++.|.+.++.... .+ +..+..+++|++|++++|.+.. .|..+++++
T Consensus 28 l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~----~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 103 (455)
T 3v47_A 28 LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGL----VIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLA 103 (455)
T ss_dssp CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTC----EECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCT
T ss_pred CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccc----eECcccccccccCCEEeCCCCccCccChhhccCcc
Confidence 457789999998887776433333 8899999999886632 23 3334889999999999999884 477889999
Q ss_pred CcCeEeccCCCCcc-chhh--hcccccccEeeccCCccccc-chh-hhcCcCCcEEEccCCCCCCCCCCCcCCC--CCCc
Q 037018 396 HLKYLKLNIPSLNC-LPSL--LCTLLNLQTLEMPASYIDHS-PEG-IWMMQKLMHLNFGSINLPAPPKNYSSSL--KNLI 468 (663)
Q Consensus 396 ~L~~L~L~~~~i~~-lp~~--i~~L~~L~~L~L~~~~l~~l-p~~-l~~l~~L~~L~l~~~~~~~~~~~~l~~l--~~L~ 468 (663)
+|++|++++|.++. +|.. ++.+++|++|++++|.+..+ |.. +..+++|++|++++|.+....+..+..+ .+|+
T Consensus 104 ~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~ 183 (455)
T 3v47_A 104 NLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFT 183 (455)
T ss_dssp TCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEE
T ss_pred cCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccc
Confidence 99999999998884 4544 88899999999999977766 544 7889999999999666666666666655 5677
Q ss_pred EeeCcCCC-CCChh---------hcCCCCCccEEEeecCCCccccchhhhhc----------------------------
Q 037018 469 FISSLNPS-SCTPD---------ILGRLPNVQTLRISGDLSHYHSGVSKSLC---------------------------- 510 (663)
Q Consensus 469 ~L~l~~~~-~~~~~---------~l~~l~~L~~L~l~~~~~~~~~~~~~~l~---------------------------- 510 (663)
.|++.++. ...+. .+..+++|+.|++++|. .....+..+.
T Consensus 184 ~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~--l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 261 (455)
T 3v47_A 184 LLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNG--FKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNF 261 (455)
T ss_dssp EEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSC--CCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSS
T ss_pred ccccccCcccccchhhccccccccccccceeeeEecCCCc--ccccchhhhhccccccceeeEeeccccccccccchhhh
Confidence 77777766 22211 12355778888888773 3333332221
Q ss_pred -----------CCCCCCEEEEeecCcccc-ccccccccccCCCCceEEEEecccCCCCChhhhcCCCCCcEEEeecCCCC
Q 037018 511 -----------ELHKLECLQLVHEGRMWQ-LSRMVLSEYQFPPCLTQLSLSNTQLMEDPMPALEKLPHLEVLKLKQNSYS 578 (663)
Q Consensus 511 -----------~l~~L~~L~l~~~~~l~~-lp~~~~~l~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~ 578 (663)
..++|+.|++++ +.+.. .|. .+.. +++|+.|++++|.+....+..+.++++|+.|++++|.+.
T Consensus 262 ~~~~~~~~~~~~~~~L~~L~l~~-n~l~~~~~~---~~~~-l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 336 (455)
T 3v47_A 262 KDPDNFTFKGLEASGVKTCDLSK-SKIFALLKS---VFSH-FTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLG 336 (455)
T ss_dssp CCCCTTTTGGGTTSCCCEEECCS-SCCCEECTT---TTTT-CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred ccCcccccccccccCceEEEecC-ccccccchh---hccc-CCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccC
Confidence 125799999997 66654 455 6777 999999999999998877888999999999999999886
Q ss_pred CceeeecCCCCCCcccEEEccCCCCccccccccccccccceEEeecCCCCCCCccccCCCCCCCEEEecCCC
Q 037018 579 ERKLACVGSGSFPQLKILHLKSMLWLEEWTMGAGAMPKLESLIVNPCAYLRKLPEELWCIKSLCKLELHWPQ 650 (663)
Q Consensus 579 ~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~l~~l~sL~~L~l~~c~ 650 (663)
+..+.. +..+++|+.|+|++|......|..+..+++|+.|++++|......+..+..+++|+.|++++||
T Consensus 337 ~~~~~~--~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 337 SIDSRM--FENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 406 (455)
T ss_dssp EECGGG--GTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CcChhH--hcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCC
Confidence 554433 6789999999999975433447788999999999999998655333456899999999999855
No 6
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.94 E-value=1.2e-26 Score=267.99 Aligned_cols=317 Identities=17% Similarity=0.138 Sum_probs=236.4
Q ss_pred CCceeEEEEEecccccccccccC-CCcccEEEeecCccccccccchhHHhcCCCcccEEEecCCcC--------------
Q 037018 320 LANVKRCFILEDLIDEFISLEHS-DMYLQSFLNHTLESDRLALIDCENFCKKFKHLRVLNLGSAIL-------------- 384 (663)
Q Consensus 320 ~~~~r~lsi~~~~~~~~~~~~~~-~~~lr~L~l~~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~l-------------- 384 (663)
..+++++.+..+.+....+. .. +++++.|.+.++...+ .++..+..+++|++|++++|.+
T Consensus 199 l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~----~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~ 273 (768)
T 3rgz_A 199 CVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSG----DFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQY 273 (768)
T ss_dssp CTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCS----CHHHHTTTCSSCCEEECCSSCCEESCCCCCCTTCCE
T ss_pred CCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCC----cccHHHhcCCCCCEEECCCCcccCccCccccCCCCE
Confidence 34566666666554443322 12 5666666666665532 2233335555555555555544
Q ss_pred --------c-ccCccCCCC-CCcCeEeccCCCCc-cchhhhcccccccEeeccCCccc-ccchh-hhcCcCCcEEEccCC
Q 037018 385 --------Y-QYPPGLENL-FHLKYLKLNIPSLN-CLPSLLCTLLNLQTLEMPASYID-HSPEG-IWMMQKLMHLNFGSI 451 (663)
Q Consensus 385 --------~-~lp~~~~~l-~~L~~L~L~~~~i~-~lp~~i~~L~~L~~L~L~~~~l~-~lp~~-l~~l~~L~~L~l~~~ 451 (663)
. .+|..+... ++|++|++++|.+. .+|..++++++|++|++++|.+. .+|.. +..+++|++|++++|
T Consensus 274 L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n 353 (768)
T 3rgz_A 274 LSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFN 353 (768)
T ss_dssp EECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSS
T ss_pred EECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCC
Confidence 3 455555443 67777777777666 56677777777777777777554 66655 777777777777755
Q ss_pred CCCCCCCCCcCCCC-CCcEeeCcCCC--CCChhhcCC--CCCccEEEeecCCCccccchhhhhcCCCCCCEEEEeecCcc
Q 037018 452 NLPAPPKNYSSSLK-NLIFISSLNPS--SCTPDILGR--LPNVQTLRISGDLSHYHSGVSKSLCELHKLECLQLVHEGRM 526 (663)
Q Consensus 452 ~~~~~~~~~l~~l~-~L~~L~l~~~~--~~~~~~l~~--l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l 526 (663)
.+...+|..+..++ +|+.|+++++. +..+..+.. +++|+.|++++| ......|..+..+++|+.|++++ +.+
T Consensus 354 ~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n--~l~~~~p~~l~~l~~L~~L~Ls~-N~l 430 (768)
T 3rgz_A 354 EFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNN--GFTGKIPPTLSNCSELVSLHLSF-NYL 430 (768)
T ss_dssp EEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSS--EEEEECCGGGGGCTTCCEEECCS-SEE
T ss_pred ccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCC--ccccccCHHHhcCCCCCEEECcC-Ccc
Confidence 44557777777766 78888877776 445555555 778899999888 56667888899999999999997 666
Q ss_pred c-cccccccccccCCCCceEEEEecccCCCCChhhhcCCCCCcEEEeecCCCCCceeeecCCCCCCcccEEEccCCCCcc
Q 037018 527 W-QLSRMVLSEYQFPPCLTQLSLSNTQLMEDPMPALEKLPHLEVLKLKQNSYSERKLACVGSGSFPQLKILHLKSMLWLE 605 (663)
Q Consensus 527 ~-~lp~~~~~l~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~ 605 (663)
. .+|. .+.. +++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+.. +..+++|+.|+|++|....
T Consensus 431 ~~~~p~---~l~~-l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~--l~~l~~L~~L~L~~N~l~~ 504 (768)
T 3rgz_A 431 SGTIPS---SLGS-LSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSG--LSNCTNLNWISLSNNRLTG 504 (768)
T ss_dssp ESCCCG---GGGG-CTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGG--GGGCTTCCEEECCSSCCCS
T ss_pred cCcccH---HHhc-CCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHH--HhcCCCCCEEEccCCccCC
Confidence 5 6787 8888 999999999999998888889999999999999999998766554 6789999999999987666
Q ss_pred ccccccccccccceEEeecCCCCCCCccccCCCCCCCEEEecCCC
Q 037018 606 EWTMGAGAMPKLESLIVNPCAYLRKLPEELWCIKSLCKLELHWPQ 650 (663)
Q Consensus 606 ~l~~~~~~l~~L~~L~l~~c~~l~~l~~~l~~l~sL~~L~l~~c~ 650 (663)
.+|..++.+++|+.|++++|.....+|..+..+++|+.|++++|+
T Consensus 505 ~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 549 (768)
T 3rgz_A 505 EIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNL 549 (768)
T ss_dssp CCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSE
T ss_pred cCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCc
Confidence 889999999999999999999888899999999999999999875
No 7
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.94 E-value=1.5e-27 Score=267.67 Aligned_cols=237 Identities=15% Similarity=0.135 Sum_probs=181.6
Q ss_pred ccchhhcHHHHHHHHhcCCCCceEEEEEec----chhhHHHHHhcCCCccccCCCCccccCCcee-eccCCCcceEeCCC
Q 037018 21 SKTVKVKVKAVLVWLFMLDSMWLQFLTAVA----YKTAFVADIYNNNVDLSAMNPKLRVPKRFIN-KAFPVAFPVDVNCA 95 (663)
Q Consensus 21 ~~G~~~~~~~i~~~L~~~~~~~~~vi~i~G----GKTtla~~v~~~~~~~~~~~~~~~~~~~F~~-~~~~~~~~v~vs~~ 95 (663)
.|||+.++++|.++|.... ..+||+|+| ||||||+++|++. +++.+|+. ++| +++++.
T Consensus 130 ~VGRe~eLeeL~elL~~~d--~~RVV~IvGmGGIGKTTLAk~Vy~d~----------rV~~~Fd~gV~W-----VsVs~~ 192 (1221)
T 1vt4_I 130 NVSRLQPYLKLRQALLELR--PAKNVLIDGVLGSGKTWVALDVCLSY----------KVQCKMDFKIFW-----LNLKNC 192 (1221)
T ss_dssp CCCCHHHHHHHHHHHHHCC--SSCEEEECCSTTSSHHHHHHHHHHHC----------HHHHHHSSCEEE-----EECCCS
T ss_pred CCCcHHHHHHHHHHHhccC--CCeEEEEEcCCCccHHHHHHHHHHhh----------HHHHhCCCcEEE-----EEeCCC
Confidence 4999999999999998643 478999999 9999999999977 88999997 889 999999
Q ss_pred cchhHHHHHHHHHHHhCC---C--CCc---chhhhhHhhHHHHHHHHhh---cCCcEEEEEeCCCCChhhHHHHHhhCCC
Q 037018 96 CNAQLNHILDDIIKSVMP---P--SRV---NVIISEDYKLKTIILRDYL---TNKKDFIVLDDVFDDREIWNDLEKFLPD 164 (663)
Q Consensus 96 ~~~~~~~l~~~i~~~l~~---~--~~~---~~~~~~~~~l~~~~l~~~L---~~kr~LlVLDdv~~~~~~~~~l~~~~~~ 164 (663)
++ ...+++.|++.+.. . ... .......+.+ ...+++.| .+||+||||||||+ .+.|+.+.
T Consensus 193 ~d--~~~IL~~Ll~lL~~i~~~~~~~~d~~~~ip~~leeL-~e~Lr~lL~~l~~KRvLLVLDDVwd-~eqLe~f~----- 263 (1221)
T 1vt4_I 193 NS--PETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSI-QAELRRLLKSKPYENCLLVLLNVQN-AKAWNAFN----- 263 (1221)
T ss_dssp SS--HHHHHHHHHHHHHHHCSSSTTTSCCCSSHHHHHHHH-HHHHHHHHHHSTTSSCEEEEESCCC-HHHHHHHH-----
T ss_pred CC--HHHHHHHHHHHHhhcCcccccccccccCCCCCHHHH-HHHHHHHHHhhcCCCEEEEEeCcCh-HHHHHhhC-----
Confidence 98 88888887775321 1 000 0011113455 56666655 78999999999999 99998763
Q ss_pred CCCCceEEEEEeCCCCC------ceEecc-------------------------------ccccchhHHHHHhhccc-cC
Q 037018 165 NQNGSRVLILVTDPFLL------TSFELE-------------------------------HGEKIRLNSALVGGPLI-RI 206 (663)
Q Consensus 165 ~~~gskIiiT~r~~~~~------~~~~l~-------------------------------~~~~iPlal~~~g~~L~-~~ 206 (663)
+|||||||||++..+ ..|+++ ++.++|||++++|+.|+ +.
T Consensus 264 --pGSRILVTTRd~~Va~~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~g~~~eeL~~eICgGLPLALkLaGs~Lr~k~ 341 (1221)
T 1vt4_I 264 --LSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGL 341 (1221)
T ss_dssp --SSCCEEEECSCSHHHHHHHHHSSCEEEECSSSSCCCHHHHHHHHHHHHCCCTTTHHHHHCCCCHHHHHHHHHHHHHSC
T ss_pred --CCeEEEEeccChHHHHhcCCCeEEEecCccccCCcCHHHHHHHHHHHcCCCHHHHHHHHhCCCHHHHHHHHHHHhCCC
Confidence 699999999986532 123222 34455999999999999 53
Q ss_pred -ChhhHHHHHhhcCCCCCCCCcCCCChhhhhhhc-ceeCCCChhh-HHHHhhhcccCCCceechHHHHHHHHHcCC-C--
Q 037018 207 -KYEGWQFFILHYGSMPLGSYFQGEAMPTIWRHI-YSVMELPFHL-KVCCLYLCVFRPSIEISTRQLYQLWVAEVS-K-- 280 (663)
Q Consensus 207 -~~~~W~~~~~~~~~~~l~~~~~~~~~~~i~~~l-~sy~~L~~~~-k~cfl~~a~Fp~~~~i~~~~Li~~Wi~~g~-~-- 280 (663)
+.++|+.. . ...+...+ +||+.||++. |.||+|||+||+++.|+.+.++.+|+++|. +
T Consensus 342 ~s~eeW~~~--~--------------~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeGeedAe 405 (1221)
T 1vt4_I 342 ATWDNWKHV--N--------------CDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVM 405 (1221)
T ss_dssp SSHHHHHHC--S--------------CHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSCSHHHH
T ss_pred CCHHHHhcC--C--------------hhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCCHHHHH
Confidence 56688642 1 14563445 9999999999 999999999999999999999999998864 2
Q ss_pred ---------C--CCCCccceEEcCHHHHHHHH
Q 037018 281 ---------R--RAGGTIKACYVPGFVYTSLF 301 (663)
Q Consensus 281 ---------g--~~~~~~~~~~mhdll~dl~~ 301 (663)
+ ...+...+|+|||++++++.
T Consensus 406 ~~L~eLvdRSLLq~d~~~~rYrMHDLllELr~ 437 (1221)
T 1vt4_I 406 VVVNKLHKYSLVEKQPKESTISIPSIYLELKV 437 (1221)
T ss_dssp HHHHHHHTSSSSSBCSSSSEEBCCCHHHHHHH
T ss_pred HHHHHHHhhCCEEEeCCCCEEEehHHHHHHhc
Confidence 1 22234578999999999663
No 8
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.94 E-value=5.5e-26 Score=255.94 Aligned_cols=129 Identities=18% Similarity=0.156 Sum_probs=85.5
Q ss_pred CCCceeEEEEEecccccccccccC-CCcccEEEeecCccccccccchhHHhcCCCcccEEEecCCcCccc-CccCCCCCC
Q 037018 319 TLANVKRCFILEDLIDEFISLEHS-DMYLQSFLNHTLESDRLALIDCENFCKKFKHLRVLNLGSAILYQY-PPGLENLFH 396 (663)
Q Consensus 319 ~~~~~r~lsi~~~~~~~~~~~~~~-~~~lr~L~l~~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~l~~l-p~~~~~l~~ 396 (663)
.+..++++.+..+.+...+..... +++++.|.+.++.... ..+..|.++++|++|++++|.++.+ |..++++++
T Consensus 30 ~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~----i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~ 105 (606)
T 3vq2_A 30 IPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIET----IEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTS 105 (606)
T ss_dssp SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCE----ECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTT
T ss_pred CCCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccc----cCHHHhhchhhcCEeECCCCcccccChhhcCCccc
Confidence 456677777777776666533333 7777777777776542 1133337777777777777777644 566777777
Q ss_pred cCeEeccCCCCccch-hhhcccccccEeeccCCccc--ccchhhhcCcCCcEEEccCC
Q 037018 397 LKYLKLNIPSLNCLP-SLLCTLLNLQTLEMPASYID--HSPEGIWMMQKLMHLNFGSI 451 (663)
Q Consensus 397 L~~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~l~--~lp~~l~~l~~L~~L~l~~~ 451 (663)
|++|++++|.+..+| ..++++++|++|++++|.+. .+|..++++++|++|++++|
T Consensus 106 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n 163 (606)
T 3vq2_A 106 LENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYN 163 (606)
T ss_dssp CCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSS
T ss_pred CCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCC
Confidence 777777777776655 55677777777777777554 35666777777777777644
No 9
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.94 E-value=8.3e-26 Score=255.04 Aligned_cols=313 Identities=16% Similarity=0.162 Sum_probs=255.9
Q ss_pred CCCceeEEEEEecccccccccccC-CCcccEEEeecCc-cccccccchhHHhcC------CCcccEEEecCCcCcccCc-
Q 037018 319 TLANVKRCFILEDLIDEFISLEHS-DMYLQSFLNHTLE-SDRLALIDCENFCKK------FKHLRVLNLGSAILYQYPP- 389 (663)
Q Consensus 319 ~~~~~r~lsi~~~~~~~~~~~~~~-~~~lr~L~l~~~~-~~~~~~~~l~~~~~~------l~~Lr~L~L~~~~l~~lp~- 389 (663)
...+++++.+..+.+....+.... .++++.|.+.++. ..+ ..++.-+.. +++|++|++++|.++.+|.
T Consensus 247 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~---~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~ 323 (636)
T 4eco_A 247 NLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISG---EQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVE 323 (636)
T ss_dssp GCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCH---HHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCH
T ss_pred ccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCcc---ccchHHHHhhhccccCCCCCEEECCCCcCCccCch
Confidence 356789999998875443322222 8999999999997 531 023332244 4999999999999999998
Q ss_pred -cCCCCCCcCeEeccCCCCc-cchhhhcccccccEeeccCCcccccchhhhcCcC-CcEEEccCCCCCCCCCCCcCCCC-
Q 037018 390 -GLENLFHLKYLKLNIPSLN-CLPSLLCTLLNLQTLEMPASYIDHSPEGIWMMQK-LMHLNFGSINLPAPPKNYSSSLK- 465 (663)
Q Consensus 390 -~~~~l~~L~~L~L~~~~i~-~lp~~i~~L~~L~~L~L~~~~l~~lp~~l~~l~~-L~~L~l~~~~~~~~~~~~l~~l~- 465 (663)
.++.+++|++|++++|.+. .+| .++.+++|++|++++|.+..+|..+..+++ |++|++++|.+. .+|..+..++
T Consensus 324 ~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l 401 (636)
T 4eco_A 324 TSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSV 401 (636)
T ss_dssp HHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCS
T ss_pred hhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCc-ccchhhhhccc
Confidence 8999999999999999999 999 999999999999999988899999999999 999999955444 8888887655
Q ss_pred -CCcEeeCcCCC--CCChhhcC-------CCCCccEEEeecCCCccccchhhh-hcCCCCCCEEEEeecCcccccccccc
Q 037018 466 -NLIFISSLNPS--SCTPDILG-------RLPNVQTLRISGDLSHYHSGVSKS-LCELHKLECLQLVHEGRMWQLSRMVL 534 (663)
Q Consensus 466 -~L~~L~l~~~~--~~~~~~l~-------~l~~L~~L~l~~~~~~~~~~~~~~-l~~l~~L~~L~l~~~~~l~~lp~~~~ 534 (663)
+|+.|+++++. +..+..++ .+++|+.|++++|. .. .++.. +..+++|++|++++ +.++.+|.
T Consensus 402 ~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~--l~-~lp~~~~~~l~~L~~L~Ls~-N~l~~i~~--- 474 (636)
T 4eco_A 402 SVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQ--IS-KFPKELFSTGSPLSSINLMG-NMLTEIPK--- 474 (636)
T ss_dssp SCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSC--CC-SCCTHHHHTTCCCSEEECCS-SCCSBCCS---
T ss_pred CccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCc--cC-cCCHHHHccCCCCCEEECCC-CCCCCcCH---
Confidence 89999999998 55666677 78899999999993 43 55554 45689999999997 88888887
Q ss_pred ccccCCC-------CceEEEEecccCCCCChhhhc--CCCCCcEEEeecCCCCCceeeecCCCCCCcccEEEccC-----
Q 037018 535 SEYQFPP-------CLTQLSLSNTQLMEDPMPALE--KLPHLEVLKLKQNSYSERKLACVGSGSFPQLKILHLKS----- 600 (663)
Q Consensus 535 ~l~~~l~-------~L~~L~L~~~~l~~~~~~~l~--~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~----- 600 (663)
.+..... +|+.|++++|.++ ..+..+. .+++|+.|+|++|.+.+ .+.. +..+++|+.|+|++
T Consensus 475 ~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~--~~~l~~L~~L~Ls~N~~ls 550 (636)
T 4eco_A 475 NSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQ--PLNSSTLKGFGIRNQRDAQ 550 (636)
T ss_dssp SSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCG--GGGCSSCCEEECCSCBCTT
T ss_pred HHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChh--hhcCCCCCEEECCCCcccc
Confidence 4433122 9999999999987 5566665 99999999999999987 3333 56899999999954
Q ss_pred -CCCccccccccccccccceEEeecCCCCCCCccccCCCCCCCEEEecCCC
Q 037018 601 -MLWLEEWTMGAGAMPKLESLIVNPCAYLRKLPEELWCIKSLCKLELHWPQ 650 (663)
Q Consensus 601 -~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~l~~l~sL~~L~l~~c~ 650 (663)
|.....+|..+..+++|+.|++++|.. +.+|..+. ++|+.|++++|+
T Consensus 551 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~ 598 (636)
T 4eco_A 551 GNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNP 598 (636)
T ss_dssp CCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCT
T ss_pred cCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCC
Confidence 445668898999999999999999987 78888765 899999999997
No 10
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.94 E-value=1.3e-26 Score=261.68 Aligned_cols=318 Identities=14% Similarity=0.135 Sum_probs=240.6
Q ss_pred CCCceeEEEEEeccccc------------------cccccc--CCCcccEEEeecCccccccccchhHHhcCCCcccEEE
Q 037018 319 TLANVKRCFILEDLIDE------------------FISLEH--SDMYLQSFLNHTLESDRLALIDCENFCKKFKHLRVLN 378 (663)
Q Consensus 319 ~~~~~r~lsi~~~~~~~------------------~~~~~~--~~~~lr~L~l~~~~~~~~~~~~l~~~~~~l~~Lr~L~ 378 (663)
...+++.+.+..+.+.. ++..-. ..++++.|.+.++...+ .++..+.++++|++|+
T Consensus 204 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~----~~p~~l~~l~~L~~L~ 279 (636)
T 4eco_A 204 RLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLT----KLPTFLKALPEMQLIN 279 (636)
T ss_dssp GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCS----SCCTTTTTCSSCCEEE
T ss_pred cccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCc----cChHHHhcCCCCCEEE
Confidence 34678888888887766 553333 26788888888887542 4444448888888888
Q ss_pred ecCCc-Cc--ccCccCCCC------CCcCeEeccCCCCccchh--hhcccccccEeeccCCccc-ccchhhhcCcCCcEE
Q 037018 379 LGSAI-LY--QYPPGLENL------FHLKYLKLNIPSLNCLPS--LLCTLLNLQTLEMPASYID-HSPEGIWMMQKLMHL 446 (663)
Q Consensus 379 L~~~~-l~--~lp~~~~~l------~~L~~L~L~~~~i~~lp~--~i~~L~~L~~L~L~~~~l~-~lp~~l~~l~~L~~L 446 (663)
+++|. ++ .+|..++.+ ++|++|++++|.++.+|. .++++++|++|++++|.+. .+| .+..+++|++|
T Consensus 280 Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L 358 (636)
T 4eco_A 280 VACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASL 358 (636)
T ss_dssp CTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEE
T ss_pred CcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEE
Confidence 88887 76 477777665 888888888888888887 7888888888888888776 788 78888888888
Q ss_pred EccCCCCCCCCCCCcCCCCC-CcEeeCcCCC-CCChhhcCCCC--CccEEEeecCCCccccchhhhhc-------CCCCC
Q 037018 447 NFGSINLPAPPKNYSSSLKN-LIFISSLNPS-SCTPDILGRLP--NVQTLRISGDLSHYHSGVSKSLC-------ELHKL 515 (663)
Q Consensus 447 ~l~~~~~~~~~~~~l~~l~~-L~~L~l~~~~-~~~~~~l~~l~--~L~~L~l~~~~~~~~~~~~~~l~-------~l~~L 515 (663)
++++| ....+|..+..+++ |+.|+++++. ..+|..++.++ +|+.|++++| ......|..+. .+++|
T Consensus 359 ~L~~N-~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N--~l~~~~p~~l~~~~~~~~~~~~L 435 (636)
T 4eco_A 359 NLAYN-QITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYN--EIGSVDGKNFDPLDPTPFKGINV 435 (636)
T ss_dssp ECCSS-EEEECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSS--CTTTTTTCSSCTTCSSCCCCCCE
T ss_pred ECCCC-ccccccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCC--cCCCcchhhhcccccccccCCCC
Confidence 88844 43377888888888 8888888887 66666666654 8889999888 46666666666 67789
Q ss_pred CEEEEeecCccccccccccccccCCCCceEEEEecccCCCCChhhhcCC-------CCCcEEEeecCCCCCceeeecCCC
Q 037018 516 ECLQLVHEGRMWQLSRMVLSEYQFPPCLTQLSLSNTQLMEDPMPALEKL-------PHLEVLKLKQNSYSERKLACVGSG 588 (663)
Q Consensus 516 ~~L~l~~~~~l~~lp~~~~~l~~~l~~L~~L~L~~~~l~~~~~~~l~~l-------~~L~~L~L~~~~~~~~~~~~~~~~ 588 (663)
+.|++++ +.++.+|. .+...+++|+.|++++|.+.......+... ++|+.|++++|.+.. .+......
T Consensus 436 ~~L~Ls~-N~l~~lp~---~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~~~~~ 510 (636)
T 4eco_A 436 SSINLSN-NQISKFPK---ELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTK-LSDDFRAT 510 (636)
T ss_dssp EEEECCS-SCCCSCCT---HHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCB-CCGGGSTT
T ss_pred CEEECcC-CccCcCCH---HHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCc-cChhhhhc
Confidence 9999986 77888886 543327889999999998874333334333 389999999888873 33321013
Q ss_pred CCCcccEEEccCCCCccccccccccccccceEEee------cCCCCCCCccccCCCCCCCEEEecCCC
Q 037018 589 SFPQLKILHLKSMLWLEEWTMGAGAMPKLESLIVN------PCAYLRKLPEELWCIKSLCKLELHWPQ 650 (663)
Q Consensus 589 ~~~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~------~c~~l~~l~~~l~~l~sL~~L~l~~c~ 650 (663)
.+++|+.|+|++| .+..+|..+..+++|+.|+++ +|.....+|..+..+++|+.|++++|.
T Consensus 511 ~l~~L~~L~Ls~N-~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 577 (636)
T 4eco_A 511 TLPYLVGIDLSYN-SFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSND 577 (636)
T ss_dssp TCTTCCEEECCSS-CCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSC
T ss_pred cCCCcCEEECCCC-CCCCcChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCc
Confidence 8899999999985 566688888899999999995 455667788888899999999999987
No 11
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.94 E-value=2e-26 Score=281.13 Aligned_cols=259 Identities=17% Similarity=0.186 Sum_probs=193.6
Q ss_pred ccccccchhhcHHHHHHHHhcCCCCceEEEEEec----chhhHHHHHhcCCCccccCCCCcc-ccCCce-eeccCCCcce
Q 037018 17 TSCSSKTVKVKVKAVLVWLFMLDSMWLQFLTAVA----YKTAFVADIYNNNVDLSAMNPKLR-VPKRFI-NKAFPVAFPV 90 (663)
Q Consensus 17 ~~~~~~G~~~~~~~i~~~L~~~~~~~~~vi~i~G----GKTtla~~v~~~~~~~~~~~~~~~-~~~~F~-~~~~~~~~~v 90 (663)
....+|||++++++|.++|...+. ..++|+|+| ||||||+++|++. + +..+|. .+.| |
T Consensus 122 ~~~~~vgR~~~~~~l~~~l~~~~~-~~~~v~i~G~gG~GKTtLa~~~~~~~----------~~~~~~~~~~~~~-----v 185 (1249)
T 3sfz_A 122 RPVIFVTRKKLVHAIQQKLWKLNG-EPGWVTIYGMAGCGKSVLAAEAVRDH----------SLLEGCFSGGVHW-----V 185 (1249)
T ss_dssp CCSSCCCCHHHHHHHHHHHHTTTT-SCEEEEEECSTTSSHHHHHHHHTCCH----------HHHTTTSTTCEEE-----E
T ss_pred CCceeccHHHHHHHHHHHHhhccC-CCCEEEEEeCCCCCHHHHHHHHhcCh----------hHHHhhCCCeEEE-----E
Confidence 334699999999999999987654 789999999 9999999999965 3 355565 5559 9
Q ss_pred EeCCCcchhHHHHHHHHHHHhCCCCCcchhhhh-HhhHHHHHHHHhhcCC--cEEEEEeCCCCChhhHHHHHhhCCCCCC
Q 037018 91 DVNCACNAQLNHILDDIIKSVMPPSRVNVIISE-DYKLKTIILRDYLTNK--KDFIVLDDVFDDREIWNDLEKFLPDNQN 167 (663)
Q Consensus 91 ~vs~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~-~~~l~~~~l~~~L~~k--r~LlVLDdv~~~~~~~~~l~~~~~~~~~ 167 (663)
++++..+.+....++.++..+............ .+.+ ...+++.+.+| |+||||||||+ ..+|+.+ .+
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~l~~~l~~~~~~~LlvlDd~~~-~~~~~~~-------~~ 256 (1249)
T 3sfz_A 186 SIGKQDKSGLLMKLQNLCMRLDQEESFSQRLPLNIEEA-KDRLRVLMLRKHPRSLLILDDVWD-PWVLKAF-------DN 256 (1249)
T ss_dssp ECCSCCHHHHHHHHHHHHHHHTTTCTTCSSCCSSHHHH-HHHHHHHTSSSSCSCEEEEESCCC-HHHHTTT-------CS
T ss_pred EECCcCchHHHHHHHHHHHHhhhhcccccCCCCCHHHH-HHHHHHHHhccCCCEEEEEecCCC-HHHHHhh-------cC
Confidence 999866544666788888888765422111112 5667 78888888877 99999999999 7776654 57
Q ss_pred CceEEEEEeCCCCC-------ceEecc--------------------------------ccccchhHHHHHhhccc-cCC
Q 037018 168 GSRVLILVTDPFLL-------TSFELE--------------------------------HGEKIRLNSALVGGPLI-RIK 207 (663)
Q Consensus 168 gskIiiT~r~~~~~-------~~~~l~--------------------------------~~~~iPlal~~~g~~L~-~~~ 207 (663)
|||||||||++..+ ..+.+. .+.++|||++.+|+.|+ +.
T Consensus 257 ~~~ilvTtR~~~~~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~- 335 (1249)
T 3sfz_A 257 QCQILLTTRDKSVTDSVMGPKHVVPVESGLGREKGLEILSLFVNMKKEDLPAEAHSIIKECKGSPLVVSLIGALLRDFP- 335 (1249)
T ss_dssp SCEEEEEESSTTTTTTCCSCBCCEECCSSCCHHHHHHHHHHHHTSCSTTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS-
T ss_pred CCEEEEEcCCHHHHHhhcCCceEEEecCCCCHHHHHHHHHHhhCCChhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh-
Confidence 99999999987542 344432 22233999999999999 44
Q ss_pred hhhHHHHHhhcCCCCCCCCcC----C---CChhhhhhhc-ceeCCCChhhHHHHhhhcccCCCceechHHHHHHHHHcCC
Q 037018 208 YEGWQFFILHYGSMPLGSYFQ----G---EAMPTIWRHI-YSVMELPFHLKVCCLYLCVFRPSIEISTRQLYQLWVAEVS 279 (663)
Q Consensus 208 ~~~W~~~~~~~~~~~l~~~~~----~---~~~~~i~~~l-~sy~~L~~~~k~cfl~~a~Fp~~~~i~~~~Li~~Wi~~g~ 279 (663)
..|+..++. +..... . ...+.+...+ +||+.||+++|.||+|||+||+++.|+++.++..|.+++.
T Consensus 336 -~~~~~~l~~-----l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~~~ 409 (1249)
T 3sfz_A 336 -NRWAYYLRQ-----LQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLETE 409 (1249)
T ss_dssp -SCHHHHHHH-----HHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCCHH
T ss_pred -hHHHHHHHH-----HhhhhhhhcccccccchHHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCCHH
Confidence 468877776 322221 1 1224563444 9999999999999999999999999999999999976644
Q ss_pred --C---------C----CCCCccceEEcCHHHHHHHHHhcccC
Q 037018 280 --K---------R----RAGGTIKACYVPGFVYTSLFFMAGMM 307 (663)
Q Consensus 280 --~---------g----~~~~~~~~~~mhdll~dl~~~~~~~~ 307 (663)
+ + ...+...+|+||+++|++++..+.++
T Consensus 410 ~~~~~l~~L~~~sl~~~~~~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 410 EVEDILQEFVNKSLLFCNRNGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp HHHHHHHHHHHTTSCEEEESSSSEEEECCHHHHHHHHHHTGGG
T ss_pred HHHHHHHHHHhccceEEecCCCceEEEecHHHHHHHHhhhhHH
Confidence 1 1 23445557999999999999887654
No 12
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.94 E-value=3.1e-25 Score=231.74 Aligned_cols=279 Identities=18% Similarity=0.223 Sum_probs=236.3
Q ss_pred CCcccEEEeecCccccccccchhHHhcCCCcccEEEecCCcCcccCccCCCCCCcCeEeccCCCCccchhhhcccccccE
Q 037018 343 DMYLQSFLNHTLESDRLALIDCENFCKKFKHLRVLNLGSAILYQYPPGLENLFHLKYLKLNIPSLNCLPSLLCTLLNLQT 422 (663)
Q Consensus 343 ~~~lr~L~l~~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~ 422 (663)
.++++.|.+.++... .++.+ ..+++|++|++++|.++.++. +..+++|++|++++|.++.+| .++.+++|++
T Consensus 43 l~~L~~L~l~~~~i~-----~~~~~-~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~ 114 (347)
T 4fmz_A 43 LESITKLVVAGEKVA-----SIQGI-EYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRE 114 (347)
T ss_dssp HTTCSEEECCSSCCC-----CCTTG-GGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSE
T ss_pred cccccEEEEeCCccc-----cchhh-hhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCcccCch-HHcCCCcCCE
Confidence 789999999998765 34555 889999999999999987776 899999999999999999887 6899999999
Q ss_pred eeccCCcccccchhhhcCcCCcEEEccCCCCCCCCCCCcCCCCCCcEeeCcCCC-CCChhhcCCCCCccEEEeecCCCcc
Q 037018 423 LEMPASYIDHSPEGIWMMQKLMHLNFGSINLPAPPKNYSSSLKNLIFISSLNPS-SCTPDILGRLPNVQTLRISGDLSHY 501 (663)
Q Consensus 423 L~L~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~ 501 (663)
|++++|.+..++. +..+++|++|++++|...... ..+..+++|+.|++.++. ...+. ++.+++|+.|++++|. .
T Consensus 115 L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~--l 189 (347)
T 4fmz_A 115 LYLNEDNISDISP-LANLTKMYSLNLGANHNLSDL-SPLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQ--I 189 (347)
T ss_dssp EECTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCC-GGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSC--C
T ss_pred EECcCCcccCchh-hccCCceeEEECCCCCCcccc-cchhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCc--c
Confidence 9999999988886 889999999999944344444 448999999999999998 44333 8899999999999983 3
Q ss_pred ccchhhhhcCCCCCCEEEEeecCccccccccccccccCCCCceEEEEecccCCCCChhhhcCCCCCcEEEeecCCCCCce
Q 037018 502 HSGVSKSLCELHKLECLQLVHEGRMWQLSRMVLSEYQFPPCLTQLSLSNTQLMEDPMPALEKLPHLEVLKLKQNSYSERK 581 (663)
Q Consensus 502 ~~~~~~~l~~l~~L~~L~l~~~~~l~~lp~~~~~l~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~ 581 (663)
...+. +..+++|+.|++++ +.+..++ .+.. +++|+.|++++|.+..... +..+++|+.|++++|.+.+.
T Consensus 190 -~~~~~-~~~l~~L~~L~l~~-n~l~~~~----~~~~-~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~- 258 (347)
T 4fmz_A 190 -EDISP-LASLTSLHYFTAYV-NQITDIT----PVAN-MTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI- 258 (347)
T ss_dssp -CCCGG-GGGCTTCCEEECCS-SCCCCCG----GGGG-CTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC-
T ss_pred -ccccc-ccCCCccceeeccc-CCCCCCc----hhhc-CCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC-
Confidence 23333 77899999999997 7777776 3566 8999999999999865433 89999999999999988764
Q ss_pred eeecCCCCCCcccEEEccCCCCccccccccccccccceEEeecCCCCCCCccccCCCCCCCEEEecCCC
Q 037018 582 LACVGSGSFPQLKILHLKSMLWLEEWTMGAGAMPKLESLIVNPCAYLRKLPEELWCIKSLCKLELHWPQ 650 (663)
Q Consensus 582 ~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~l~~l~sL~~L~l~~c~ 650 (663)
.. +..+++|+.|++++| .+..++ .+..+++|+.|++++|......|..+..+++|+.|++++|+
T Consensus 259 -~~--~~~l~~L~~L~l~~n-~l~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 322 (347)
T 4fmz_A 259 -NA--VKDLTKLKMLNVGSN-QISDIS-VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNH 322 (347)
T ss_dssp -GG--GTTCTTCCEEECCSS-CCCCCG-GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSS
T ss_pred -hh--HhcCCCcCEEEccCC-ccCCCh-hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCc
Confidence 22 678999999999996 566665 47899999999999999777777788999999999999998
No 13
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.94 E-value=7e-26 Score=255.08 Aligned_cols=320 Identities=18% Similarity=0.096 Sum_probs=185.8
Q ss_pred CCCceeEEEEEecccccccccccC-CCcccEEEeecCccccccccchhHHhcCCCcccEEEecCCcCcc-cCccCCCCCC
Q 037018 319 TLANVKRCFILEDLIDEFISLEHS-DMYLQSFLNHTLESDRLALIDCENFCKKFKHLRVLNLGSAILYQ-YPPGLENLFH 396 (663)
Q Consensus 319 ~~~~~r~lsi~~~~~~~~~~~~~~-~~~lr~L~l~~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~l~~-lp~~~~~l~~ 396 (663)
.+..++++.+..+.+....+.... ++++++|.+.++.... ..+..|.++++|++|++++|.+.. .|..++.+++
T Consensus 31 l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~----~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 106 (606)
T 3t6q_A 31 LPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYW----IHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKA 106 (606)
T ss_dssp SCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCE----ECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTT
T ss_pred CCCcCcEEEccCCccCcCChhHhccCccceEEECCCCccce----eChhhccCccccCeeeCCCCcccccChhhhccccc
Confidence 556788888888877766533333 7888888888876642 113334788888888888888773 4566788888
Q ss_pred cCeEeccCCCCccc-hhhhcccccccEeeccCCcccccc-hhhhcCcCCcEEEccCCCCCCCCCCCcCCCCCCc--EeeC
Q 037018 397 LKYLKLNIPSLNCL-PSLLCTLLNLQTLEMPASYIDHSP-EGIWMMQKLMHLNFGSINLPAPPKNYSSSLKNLI--FISS 472 (663)
Q Consensus 397 L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~l~~lp-~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~--~L~l 472 (663)
|++|++++|.+..+ |..++++++|++|++++|.+..++ ..+..+++|++|++++|.+....|..++.+++|+ .|++
T Consensus 107 L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l 186 (606)
T 3t6q_A 107 LKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNL 186 (606)
T ss_dssp CCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEEC
T ss_pred ccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEec
Confidence 88888888887766 566777888888888887666542 2344477777777774444444444555666666 5555
Q ss_pred cCCC-CC-------------------------------------------------------------------------
Q 037018 473 LNPS-SC------------------------------------------------------------------------- 478 (663)
Q Consensus 473 ~~~~-~~------------------------------------------------------------------------- 478 (663)
.++. ..
T Consensus 187 ~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l 266 (606)
T 3t6q_A 187 NGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYF 266 (606)
T ss_dssp TTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCC
T ss_pred CCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCcc
Confidence 5544 11
Q ss_pred ---ChhhcCCCCCccEEEeecCCCccccchhhhhcCCCCCCEEEEeecCccccc-cccccccccCCCCceEEEEecccCC
Q 037018 479 ---TPDILGRLPNVQTLRISGDLSHYHSGVSKSLCELHKLECLQLVHEGRMWQL-SRMVLSEYQFPPCLTQLSLSNTQLM 554 (663)
Q Consensus 479 ---~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l-p~~~~~l~~~l~~L~~L~L~~~~l~ 554 (663)
.+..++.+++|+.|++++| ....+|..+..+++|++|++++ +.+..+ |. .+.. +++|+.|++++|.+.
T Consensus 267 ~~~~~~~~~~l~~L~~L~l~~n---~l~~lp~~l~~l~~L~~L~l~~-n~l~~~~~~---~~~~-l~~L~~L~l~~n~~~ 338 (606)
T 3t6q_A 267 FNISSNTFHCFSGLQELDLTAT---HLSELPSGLVGLSTLKKLVLSA-NKFENLCQI---SASN-FPSLTHLSIKGNTKR 338 (606)
T ss_dssp SSCCTTTTTTCTTCSEEECTTS---CCSCCCSSCCSCTTCCEEECTT-CCCSBGGGG---CGGG-CTTCSEEECCSCSSC
T ss_pred CccCHHHhccccCCCEEeccCC---ccCCCChhhcccccCCEEECcc-CCcCcCchh---hhhc-cCcCCEEECCCCCcc
Confidence 1112344445555555554 2223444444555555555554 334333 22 3444 555555555555443
Q ss_pred CCC-hhhhcCCCCCcEEEeecCCCCCceeeecCCCCCCcccEEEccCCCCccccccccccccccceEEeecCCCCCCCcc
Q 037018 555 EDP-MPALEKLPHLEVLKLKQNSYSERKLACVGSGSFPQLKILHLKSMLWLEEWTMGAGAMPKLESLIVNPCAYLRKLPE 633 (663)
Q Consensus 555 ~~~-~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~ 633 (663)
... ...+..+++|+.|++++|.+.+.......+..+++|+.|++++|......+..+..+++|+.|++++|......|.
T Consensus 339 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 418 (606)
T 3t6q_A 339 LELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQ 418 (606)
T ss_dssp CBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTC
T ss_pred cccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccc
Confidence 222 2235555555556555555544321111145566666666666543333445566666777777766665444333
Q ss_pred -ccCCCCCCCEEEecCCC
Q 037018 634 -ELWCIKSLCKLELHWPQ 650 (663)
Q Consensus 634 -~l~~l~sL~~L~l~~c~ 650 (663)
.+..+++|+.|++++|.
T Consensus 419 ~~~~~l~~L~~L~l~~n~ 436 (606)
T 3t6q_A 419 SPFQNLHLLKVLNLSHSL 436 (606)
T ss_dssp CTTTTCTTCCEEECTTCC
T ss_pred hhhhCcccCCEEECCCCc
Confidence 35667777777777764
No 14
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.94 E-value=1.8e-25 Score=257.11 Aligned_cols=316 Identities=16% Similarity=0.127 Sum_probs=251.5
Q ss_pred CCCceeEEEEEecccccccccccC-CCcccEEEeecCc-ccc-ccccchhH---HhcCCCcccEEEecCCcCcccCc--c
Q 037018 319 TLANVKRCFILEDLIDEFISLEHS-DMYLQSFLNHTLE-SDR-LALIDCEN---FCKKFKHLRVLNLGSAILYQYPP--G 390 (663)
Q Consensus 319 ~~~~~r~lsi~~~~~~~~~~~~~~-~~~lr~L~l~~~~-~~~-~~~~~l~~---~~~~l~~Lr~L~L~~~~l~~lp~--~ 390 (663)
...+++++.+..+.+....+.... +++|+.|.+.++. ..+ .....+.. .+..+++|++|++++|.+..+|. .
T Consensus 489 ~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~ 568 (876)
T 4ecn_A 489 NLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASAS 568 (876)
T ss_dssp GCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHH
T ss_pred cCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhh
Confidence 356789999998864443322222 8999999999997 532 00111111 12456699999999999999998 8
Q ss_pred CCCCCCcCeEeccCCCCccchhhhcccccccEeeccCCcccccchhhhcCcC-CcEEEccCCCCCCCCCCCcCCCCC--C
Q 037018 391 LENLFHLKYLKLNIPSLNCLPSLLCTLLNLQTLEMPASYIDHSPEGIWMMQK-LMHLNFGSINLPAPPKNYSSSLKN--L 467 (663)
Q Consensus 391 ~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~l~~l~~-L~~L~l~~~~~~~~~~~~l~~l~~--L 467 (663)
++++++|++|++++|.+..+| .++.+++|+.|++++|.+..+|..+..+++ |++|++++|. ...+|..+..++. |
T Consensus 569 l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~-L~~lp~~~~~~~~~~L 646 (876)
T 4ecn_A 569 LQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNK-LKYIPNIFNAKSVYVM 646 (876)
T ss_dssp HTTCTTCCEEECTTSCCCBCC-CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSC-CCSCCSCCCTTCSSCE
T ss_pred hhcCCCCCEEECCCCCcccch-hhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCC-CCcCchhhhccccCCC
Confidence 999999999999999999999 899999999999999988899999999999 9999999554 4488888877654 9
Q ss_pred cEeeCcCCC-CCC-h---hhcC--CCCCccEEEeecCCCccccchhhhh-cCCCCCCEEEEeecCccccccccccccccC
Q 037018 468 IFISSLNPS-SCT-P---DILG--RLPNVQTLRISGDLSHYHSGVSKSL-CELHKLECLQLVHEGRMWQLSRMVLSEYQF 539 (663)
Q Consensus 468 ~~L~l~~~~-~~~-~---~~l~--~l~~L~~L~l~~~~~~~~~~~~~~l-~~l~~L~~L~l~~~~~l~~lp~~~~~l~~~ 539 (663)
+.|++++|. ... + ..++ .+++|+.|++++|. .. .+|..+ ..+++|+.|++++ +.+..+|. .+...
T Consensus 647 ~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~--L~-~lp~~~~~~l~~L~~L~Ls~-N~L~~ip~---~~~~~ 719 (876)
T 4ecn_A 647 GSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNE--IQ-KFPTELFATGSPISTIILSN-NLMTSIPE---NSLKP 719 (876)
T ss_dssp EEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSC--CC-SCCHHHHHTTCCCSEEECCS-CCCSCCCT---TSSSC
T ss_pred CEEECcCCcCCCccccchhhhccccCCCcCEEEccCCc--CC-ccCHHHHccCCCCCEEECCC-CcCCccCh---HHhcc
Confidence 999999988 222 2 2233 34589999999993 43 566655 4789999999997 88889987 55541
Q ss_pred C-------CCceEEEEecccCCCCChhhhc--CCCCCcEEEeecCCCCCceeeecCCCCCCcccEEEccC------CCCc
Q 037018 540 P-------PCLTQLSLSNTQLMEDPMPALE--KLPHLEVLKLKQNSYSERKLACVGSGSFPQLKILHLKS------MLWL 604 (663)
Q Consensus 540 l-------~~L~~L~L~~~~l~~~~~~~l~--~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~------~~~l 604 (663)
. ++|+.|+|++|.+. ..+..+. .+++|+.|+|++|.+.+. +. . +..+++|+.|+|++ |...
T Consensus 720 ~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~l-p~-~-l~~L~~L~~L~Ls~N~~ls~N~l~ 795 (876)
T 4ecn_A 720 KDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSSF-PT-Q-PLNSSQLKAFGIRHQRDAEGNRIL 795 (876)
T ss_dssp TTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSSC-CC-G-GGGCTTCCEEECCCCBCTTCCBCC
T ss_pred ccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCcc-ch-h-hhcCCCCCEEECCCCCCccccccc
Confidence 2 28999999999987 5666676 999999999999999873 32 2 57899999999987 4445
Q ss_pred cccccccccccccceEEeecCCCCCCCccccCCCCCCCEEEecCCC
Q 037018 605 EEWTMGAGAMPKLESLIVNPCAYLRKLPEELWCIKSLCKLELHWPQ 650 (663)
Q Consensus 605 ~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~l~~l~sL~~L~l~~c~ 650 (663)
..+|..+.++++|+.|++++|.. +.+|..+. ++|+.|+|++|+
T Consensus 796 ~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~ 838 (876)
T 4ecn_A 796 RQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNP 838 (876)
T ss_dssp CCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCT
T ss_pred ccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCC
Confidence 68888999999999999999987 88998765 799999999998
No 15
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.94 E-value=2.9e-25 Score=235.86 Aligned_cols=283 Identities=18% Similarity=0.178 Sum_probs=183.6
Q ss_pred CCcccEEEeecCccccccccch-hHHhcCCCcccEEEecCCcCcccC-ccCCCCCCcCeEeccCCCCccch-hhhccccc
Q 037018 343 DMYLQSFLNHTLESDRLALIDC-ENFCKKFKHLRVLNLGSAILYQYP-PGLENLFHLKYLKLNIPSLNCLP-SLLCTLLN 419 (663)
Q Consensus 343 ~~~lr~L~l~~~~~~~~~~~~l-~~~~~~l~~Lr~L~L~~~~l~~lp-~~~~~l~~L~~L~L~~~~i~~lp-~~i~~L~~ 419 (663)
.++++.+.+.++... .+ +.++..+++|++|++++|.++.++ ..++.+++|++|++++|.+..+| ..++++++
T Consensus 44 l~~l~~l~l~~~~l~-----~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 118 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMR-----KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPL 118 (390)
T ss_dssp GCCCSEEEEESCEES-----EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred cCCceEEEecCCchh-----hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCC
Confidence 455555555555443 22 333355555666666655555433 24555556666666655555443 33455556
Q ss_pred ccEeeccCCcccccchh-hhcCcCCcEEEccCCCCCCCCCCCcCCCCCCcEeeCcCCC-CCChhhcCCC-----------
Q 037018 420 LQTLEMPASYIDHSPEG-IWMMQKLMHLNFGSINLPAPPKNYSSSLKNLIFISSLNPS-SCTPDILGRL----------- 486 (663)
Q Consensus 420 L~~L~L~~~~l~~lp~~-l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~l~~l----------- 486 (663)
|++|++++|.+..+|.. +..+++|++|++++|.+....+..+..+++|++|++.++. ... .++.+
T Consensus 119 L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~l~~L~~L~l~~n 196 (390)
T 3o6n_A 119 LTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV--DLSLIPSLFHANVSYN 196 (390)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC--CGGGCTTCSEEECCSS
T ss_pred CCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc--ccccccccceeecccc
Confidence 66666655555555544 3555556666665333333334445555556665555554 111 12233
Q ss_pred --------CCccEEEeecCCCccccchhhhhcCCCCCCEEEEeecCccccccccccccccCCCCceEEEEecccCCCCCh
Q 037018 487 --------PNVQTLRISGDLSHYHSGVSKSLCELHKLECLQLVHEGRMWQLSRMVLSEYQFPPCLTQLSLSNTQLMEDPM 558 (663)
Q Consensus 487 --------~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~lp~~~~~l~~~l~~L~~L~L~~~~l~~~~~ 558 (663)
++|+.|++++|. ....+. ...++|+.|++++ +.++..+ ++.. +++|+.|++++|.+....+
T Consensus 197 ~l~~~~~~~~L~~L~l~~n~---l~~~~~--~~~~~L~~L~l~~-n~l~~~~----~l~~-l~~L~~L~Ls~n~l~~~~~ 265 (390)
T 3o6n_A 197 LLSTLAIPIAVEELDASHNS---INVVRG--PVNVELTILKLQH-NNLTDTA----WLLN-YPGLVEVDLSYNELEKIMY 265 (390)
T ss_dssp CCSEEECCSSCSEEECCSSC---CCEEEC--CCCSSCCEEECCS-SCCCCCG----GGGG-CTTCSEEECCSSCCCEEES
T ss_pred cccccCCCCcceEEECCCCe---eeeccc--cccccccEEECCC-CCCcccH----HHcC-CCCccEEECCCCcCCCcCh
Confidence 345556665552 122222 2246888899886 7777665 6777 9999999999999887777
Q ss_pred hhhcCCCCCcEEEeecCCCCCceeeecCCCCCCcccEEEccCCCCccccccccccccccceEEeecCCCCCCCccccCCC
Q 037018 559 PALEKLPHLEVLKLKQNSYSERKLACVGSGSFPQLKILHLKSMLWLEEWTMGAGAMPKLESLIVNPCAYLRKLPEELWCI 638 (663)
Q Consensus 559 ~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~l~~l 638 (663)
..+..+++|+.|++++|.+.+... . ...+++|+.|++++| .+..+|..+..+++|+.|++++|+.. .++ +..+
T Consensus 266 ~~~~~l~~L~~L~L~~n~l~~~~~--~-~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~N~i~-~~~--~~~~ 338 (390)
T 3o6n_A 266 HPFVKMQRLERLYISNNRLVALNL--Y-GQPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYLDHNSIV-TLK--LSTH 338 (390)
T ss_dssp GGGTTCSSCCEEECCSSCCCEEEC--S-SSCCTTCCEEECCSS-CCCCCGGGHHHHTTCSEEECCSSCCC-CCC--CCTT
T ss_pred hHccccccCCEEECCCCcCcccCc--c-cCCCCCCCEEECCCC-cceecCccccccCcCCEEECCCCccc-eeC--chhh
Confidence 889999999999999998876432 2 467899999999996 67788888889999999999999854 454 6788
Q ss_pred CCCCEEEecCCC
Q 037018 639 KSLCKLELHWPQ 650 (663)
Q Consensus 639 ~sL~~L~l~~c~ 650 (663)
++|+.|+++++|
T Consensus 339 ~~L~~L~l~~N~ 350 (390)
T 3o6n_A 339 HTLKNLTLSHND 350 (390)
T ss_dssp CCCSEEECCSSC
T ss_pred ccCCEEEcCCCC
Confidence 999999999988
No 16
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.94 E-value=5.7e-26 Score=261.17 Aligned_cols=318 Identities=13% Similarity=0.109 Sum_probs=245.2
Q ss_pred CCCceeEEEEEeccccc------------------cccccc--CCCcccEEEeecCccccccccchhHHhcCCCcccEEE
Q 037018 319 TLANVKRCFILEDLIDE------------------FISLEH--SDMYLQSFLNHTLESDRLALIDCENFCKKFKHLRVLN 378 (663)
Q Consensus 319 ~~~~~r~lsi~~~~~~~------------------~~~~~~--~~~~lr~L~l~~~~~~~~~~~~l~~~~~~l~~Lr~L~ 378 (663)
...+++.+.+..+.+.. ++..-. .+++|+.|.+.++...+ .++..+.++++|++|+
T Consensus 446 ~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~----~iP~~l~~L~~L~~L~ 521 (876)
T 4ecn_A 446 RLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMT----QLPDFLYDLPELQSLN 521 (876)
T ss_dssp GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCC----SCCGGGGGCSSCCEEE
T ss_pred cCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCc----cChHHHhCCCCCCEEE
Confidence 34678899999888776 553322 27889999998887542 4455458899999999
Q ss_pred ecCCc-Cc--ccCccCCCC-------CCcCeEeccCCCCccchh--hhcccccccEeeccCCcccccchhhhcCcCCcEE
Q 037018 379 LGSAI-LY--QYPPGLENL-------FHLKYLKLNIPSLNCLPS--LLCTLLNLQTLEMPASYIDHSPEGIWMMQKLMHL 446 (663)
Q Consensus 379 L~~~~-l~--~lp~~~~~l-------~~L~~L~L~~~~i~~lp~--~i~~L~~L~~L~L~~~~l~~lp~~l~~l~~L~~L 446 (663)
+++|. ++ .+|..++.+ ++|++|++++|.+..+|. .++++++|+.|++++|.+..+| .++.+++|++|
T Consensus 522 Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L 600 (876)
T 4ecn_A 522 IACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDL 600 (876)
T ss_dssp CTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSEESEE
T ss_pred CcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccch-hhcCCCcceEE
Confidence 99997 76 367655444 499999999999999988 8999999999999999888888 78889999999
Q ss_pred EccCCCCCCCCCCCcCCCCC-CcEeeCcCCC-CCChhhcCCCCC--ccEEEeecCCCccccchh---hhhc--CCCCCCE
Q 037018 447 NFGSINLPAPPKNYSSSLKN-LIFISSLNPS-SCTPDILGRLPN--VQTLRISGDLSHYHSGVS---KSLC--ELHKLEC 517 (663)
Q Consensus 447 ~l~~~~~~~~~~~~l~~l~~-L~~L~l~~~~-~~~~~~l~~l~~--L~~L~l~~~~~~~~~~~~---~~l~--~l~~L~~ 517 (663)
++++|.+. .+|..+..+++ |+.|++++|. ..+|..+..++. |+.|++++|. .....+ ..+. .+++|+.
T Consensus 601 ~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~--l~g~ip~l~~~l~~~~~~~L~~ 677 (876)
T 4ecn_A 601 KLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNK--IGSEGRNISCSMDDYKGINAST 677 (876)
T ss_dssp ECCSSCCS-CCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSC--TTTTSSSCSSCTTTCCCCCEEE
T ss_pred ECcCCccc-cchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCc--CCCccccchhhhccccCCCcCE
Confidence 99944444 88888888888 9999999988 666776766654 9999999983 333222 2222 3458999
Q ss_pred EEEeecCccccccccccccc-cCCCCceEEEEecccCCCCChhhhc-------CCCCCcEEEeecCCCCCceeeecCCCC
Q 037018 518 LQLVHEGRMWQLSRMVLSEY-QFPPCLTQLSLSNTQLMEDPMPALE-------KLPHLEVLKLKQNSYSERKLACVGSGS 589 (663)
Q Consensus 518 L~l~~~~~l~~lp~~~~~l~-~~l~~L~~L~L~~~~l~~~~~~~l~-------~l~~L~~L~L~~~~~~~~~~~~~~~~~ 589 (663)
|++++ +.+..+|. .+. . +++|+.|+|++|.+.......+. ++++|+.|+|++|.+.. .+.......
T Consensus 678 L~Ls~-N~L~~lp~---~~~~~-l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~-lp~~l~~~~ 751 (876)
T 4ecn_A 678 VTLSY-NEIQKFPT---ELFAT-GSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS-LSDDFRATT 751 (876)
T ss_dssp EECCS-SCCCSCCH---HHHHT-TCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCC-CCGGGSTTT
T ss_pred EEccC-CcCCccCH---HHHcc-CCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCcc-chHHhhhcc
Confidence 99997 88888887 665 5 89999999999988743333333 33499999999998884 333210138
Q ss_pred CCcccEEEccCCCCccccccccccccccceEEeec------CCCCCCCccccCCCCCCCEEEecCCCH
Q 037018 590 FPQLKILHLKSMLWLEEWTMGAGAMPKLESLIVNP------CAYLRKLPEELWCIKSLCKLELHWPQP 651 (663)
Q Consensus 590 ~~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~------c~~l~~l~~~l~~l~sL~~L~l~~c~~ 651 (663)
+++|+.|+|++| .+..+|..+.++++|+.|++++ |.....+|..+.++++|+.|++++|.-
T Consensus 752 l~~L~~L~Ls~N-~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L 818 (876)
T 4ecn_A 752 LPYLSNMDVSYN-CFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI 818 (876)
T ss_dssp CTTCCEEECCSS-CCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC
T ss_pred CCCcCEEEeCCC-CCCccchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC
Confidence 999999999996 5677898899999999999987 556677888999999999999999873
No 17
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.93 E-value=5.1e-25 Score=248.06 Aligned_cols=270 Identities=19% Similarity=0.157 Sum_probs=177.9
Q ss_pred cccEEEecCCcCcccCc-cCCCCCCcCeEeccCCCCccchhhhcccccccEeeccCCccccc-chhhhcCcCCcEEEccC
Q 037018 373 HLRVLNLGSAILYQYPP-GLENLFHLKYLKLNIPSLNCLPSLLCTLLNLQTLEMPASYIDHS-PEGIWMMQKLMHLNFGS 450 (663)
Q Consensus 373 ~Lr~L~L~~~~l~~lp~-~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~l-p~~l~~l~~L~~L~l~~ 450 (663)
.|+.|++++|.+..++. .++.+++|++|++++|.++.+|..++.+++|++|++++|.+..+ |..+..+++|++|++++
T Consensus 255 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 334 (606)
T 3t6q_A 255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKG 334 (606)
T ss_dssp EEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCS
T ss_pred ceeEEEeecCccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCC
Confidence 45556666666554443 36777888888888888888888888888888888888876665 44677888888888885
Q ss_pred CCCCCCCCCC-cCCCCCCcEeeCcCCC-CCC---hhhcCCCCCccEEEeecCCCccccchhhhhcCCCCCCEEEEeecCc
Q 037018 451 INLPAPPKNY-SSSLKNLIFISSLNPS-SCT---PDILGRLPNVQTLRISGDLSHYHSGVSKSLCELHKLECLQLVHEGR 525 (663)
Q Consensus 451 ~~~~~~~~~~-l~~l~~L~~L~l~~~~-~~~---~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 525 (663)
|.....+|.. +..+++|++|+++++. ... +..++.+++|+.|++++| ......+..+..+++|++|++++ +.
T Consensus 335 n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n--~l~~~~~~~~~~l~~L~~L~l~~-n~ 411 (606)
T 3t6q_A 335 NTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYN--EPLSLKTEAFKECPQLELLDLAF-TR 411 (606)
T ss_dssp CSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSC--SCEEECTTTTTTCTTCSEEECTT-CC
T ss_pred CCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCC--cCCcCCHHHhcCCccCCeEECCC-Cc
Confidence 5555455443 7778888888888776 222 556777888888888877 35555566677777788888876 55
Q ss_pred cccc-cccccccccCCCCceEEEEecccCCCCChhhhcCCCCCcEEEeecCCCCCceeee-cCCCCCCcccEEEccCCCC
Q 037018 526 MWQL-SRMVLSEYQFPPCLTQLSLSNTQLMEDPMPALEKLPHLEVLKLKQNSYSERKLAC-VGSGSFPQLKILHLKSMLW 603 (663)
Q Consensus 526 l~~l-p~~~~~l~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~-~~~~~~~~L~~L~L~~~~~ 603 (663)
+... |.. .+.. +++|+.|++++|.+....+..++.+++|+.|++++|.+.+..+.. ..+..+++|+.|++++|..
T Consensus 412 l~~~~~~~--~~~~-l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l 488 (606)
T 3t6q_A 412 LKVKDAQS--PFQN-LHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDL 488 (606)
T ss_dssp EECCTTCC--TTTT-CTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCC
T ss_pred CCCcccch--hhhC-cccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCcc
Confidence 5432 220 3555 777777777777776666666777777777777777766532211 1145666777777776543
Q ss_pred ccccccccccccccceEEeecCCCCCCCccccCCCCCCCEEEecCC
Q 037018 604 LEEWTMGAGAMPKLESLIVNPCAYLRKLPEELWCIKSLCKLELHWP 649 (663)
Q Consensus 604 l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~l~~l~sL~~L~l~~c 649 (663)
....|..+..+++|+.|++++|......|..+.++++| .|++++|
T Consensus 489 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N 533 (606)
T 3t6q_A 489 SSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASN 533 (606)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSS
T ss_pred CccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCC
Confidence 33334556666677777776666555455555555555 5555544
No 18
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.93 E-value=3.5e-25 Score=244.60 Aligned_cols=310 Identities=16% Similarity=0.132 Sum_probs=198.9
Q ss_pred CCCceeEEEEEecccccccccccC-CCcccEEEeecCccccccccchhHHhcCCCcccEEEecCCcCcccCccCCCCCCc
Q 037018 319 TLANVKRCFILEDLIDEFISLEHS-DMYLQSFLNHTLESDRLALIDCENFCKKFKHLRVLNLGSAILYQYPPGLENLFHL 397 (663)
Q Consensus 319 ~~~~~r~lsi~~~~~~~~~~~~~~-~~~lr~L~l~~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~l~~lp~~~~~l~~L 397 (663)
.+.+++++.+..+.+...++.... ++++++|.+.++.... ..+..+..+++|++|++++|.++.+|.. .+++|
T Consensus 19 ~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L 92 (520)
T 2z7x_B 19 LSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQY----LDISVFKFNQELEYLDLSHNKLVKISCH--PTVNL 92 (520)
T ss_dssp CCTTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCE----EEGGGGTTCTTCCEEECCSSCCCEEECC--CCCCC
T ss_pred ccccccEEECCCCcccccChhhccccccccEEecCCCccCC----cChHHhhcccCCCEEecCCCceeecCcc--ccCCc
Confidence 346788888888877666532233 7889999999887752 1144448889999999999988887766 78899
Q ss_pred CeEeccCCCCcc--chhhhcccccccEeeccCCcccccchhhhcCcCC--cEEEccCCCC--CCCCCCCcCCCC------
Q 037018 398 KYLKLNIPSLNC--LPSLLCTLLNLQTLEMPASYIDHSPEGIWMMQKL--MHLNFGSINL--PAPPKNYSSSLK------ 465 (663)
Q Consensus 398 ~~L~L~~~~i~~--lp~~i~~L~~L~~L~L~~~~l~~lp~~l~~l~~L--~~L~l~~~~~--~~~~~~~l~~l~------ 465 (663)
++|++++|.+.. +|..++++++|++|++++|.+.. ..+..+++| ++|++++|.. ....|..+..+.
T Consensus 93 ~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l 170 (520)
T 2z7x_B 93 KHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHI 170 (520)
T ss_dssp SEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEE
T ss_pred cEEeccCCccccccchhhhccCCcceEEEecCcccch--hhccccccceeeEEEeecccccccccccccccccccceEEE
Confidence 999999998885 56888899999999998886654 245566666 7777775444 333343333311
Q ss_pred -----------------------------------------------------------------------------CCc
Q 037018 466 -----------------------------------------------------------------------------NLI 468 (663)
Q Consensus 466 -----------------------------------------------------------------------------~L~ 468 (663)
+|+
T Consensus 171 ~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~ 250 (520)
T 2z7x_B 171 VFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVW 250 (520)
T ss_dssp ECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCS
T ss_pred EeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCccc
Confidence 344
Q ss_pred EeeCcCCC--CCChhhc-----------------------------------------------------CCCCCccEEE
Q 037018 469 FISSLNPS--SCTPDIL-----------------------------------------------------GRLPNVQTLR 493 (663)
Q Consensus 469 ~L~l~~~~--~~~~~~l-----------------------------------------------------~~l~~L~~L~ 493 (663)
.|++.++. +.++..+ +.+++|+.|+
T Consensus 251 ~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~ 330 (520)
T 2z7x_B 251 YFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLD 330 (520)
T ss_dssp EEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEE
T ss_pred EEEeecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCccccccchhhCCcccEEE
Confidence 44444443 2333333 3344444444
Q ss_pred eecCCCccccchhhhhcCCCCCCEEEEeecCccc---cccccccccccCCCCceEEEEecccCCCCChh-hhcCCCCCcE
Q 037018 494 ISGDLSHYHSGVSKSLCELHKLECLQLVHEGRMW---QLSRMVLSEYQFPPCLTQLSLSNTQLMEDPMP-ALEKLPHLEV 569 (663)
Q Consensus 494 l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~---~lp~~~~~l~~~l~~L~~L~L~~~~l~~~~~~-~l~~l~~L~~ 569 (663)
+++| ......+..+..+++|++|++++ +.+. .+|. .+.. +++|+.|++++|.+....+. .+..+++|+.
T Consensus 331 Ls~n--~l~~~~~~~~~~l~~L~~L~L~~-N~l~~l~~~~~---~~~~-l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~ 403 (520)
T 2z7x_B 331 FSNN--LLTDTVFENCGHLTELETLILQM-NQLKELSKIAE---MTTQ-MKSLQQLDISQNSVSYDEKKGDCSWTKSLLS 403 (520)
T ss_dssp CCSS--CCCTTTTTTCCCCSSCCEEECCS-SCCCBHHHHHH---HHTT-CTTCCEEECCSSCCBCCGGGCSCCCCTTCCE
T ss_pred eECC--ccChhhhhhhccCCCCCEEEccC-CccCccccchH---HHhh-CCCCCEEECCCCcCCcccccchhccCccCCE
Confidence 4444 23333444445555555555554 4443 2233 3444 55555555555554442222 2445555555
Q ss_pred EEeecCCCCCceeeecCCCCC-CcccEEEccCCCCccccccccccccccceEEeecCCCCCCCccc-cCCCCCCCEEEec
Q 037018 570 LKLKQNSYSERKLACVGSGSF-PQLKILHLKSMLWLEEWTMGAGAMPKLESLIVNPCAYLRKLPEE-LWCIKSLCKLELH 647 (663)
Q Consensus 570 L~L~~~~~~~~~~~~~~~~~~-~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~-l~~l~sL~~L~l~ 647 (663)
|++++|.+++..+. .+ ++|+.|++++| .+..+|..+..+++|+.|++++|.. +.+|.. +..+++|+.|+++
T Consensus 404 L~Ls~N~l~~~~~~-----~l~~~L~~L~Ls~N-~l~~ip~~~~~l~~L~~L~L~~N~l-~~l~~~~~~~l~~L~~L~l~ 476 (520)
T 2z7x_B 404 LNMSSNILTDTIFR-----CLPPRIKVLDLHSN-KIKSIPKQVVKLEALQELNVASNQL-KSVPDGIFDRLTSLQKIWLH 476 (520)
T ss_dssp EECCSSCCCGGGGG-----SCCTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECC
T ss_pred EECcCCCCCcchhh-----hhcccCCEEECCCC-cccccchhhhcCCCCCEEECCCCcC-CccCHHHhccCCcccEEECc
Confidence 55555555433322 22 68888888885 5678888788999999999999974 467775 8889999999999
Q ss_pred CCC
Q 037018 648 WPQ 650 (663)
Q Consensus 648 ~c~ 650 (663)
+||
T Consensus 477 ~N~ 479 (520)
T 2z7x_B 477 TNP 479 (520)
T ss_dssp SSC
T ss_pred CCC
Confidence 876
No 19
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.93 E-value=2.5e-25 Score=248.64 Aligned_cols=110 Identities=22% Similarity=0.144 Sum_probs=77.1
Q ss_pred CCCceEEEEecccCCCCChhhhcCCCCCcEEEeecCCCCCceeeecCCCCCCcccEEEccCCCCccccccccccccccce
Q 037018 540 PPCLTQLSLSNTQLMEDPMPALEKLPHLEVLKLKQNSYSERKLACVGSGSFPQLKILHLKSMLWLEEWTMGAGAMPKLES 619 (663)
Q Consensus 540 l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~l~~L~~ 619 (663)
+++|+.|++++|.+....+..+.++++|+.|++++|.+.+...... +..+++|+.|++++|......|..+..+++|+.
T Consensus 420 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 498 (570)
T 2z63_A 420 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI-FTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQV 498 (570)
T ss_dssp CTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSC-CTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred CCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhh-hhcccCCCEEECCCCccccCChhhhhcccCCCE
Confidence 5566666666665555555566677777777777777653322233 677888888888886543344677888899999
Q ss_pred EEeecCCCCCCCccccCCCCCCCEEEecCCC
Q 037018 620 LIVNPCAYLRKLPEELWCIKSLCKLELHWPQ 650 (663)
Q Consensus 620 L~l~~c~~l~~l~~~l~~l~sL~~L~l~~c~ 650 (663)
|++++|......|..+.++++|+.|++++||
T Consensus 499 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 529 (570)
T 2z63_A 499 LNMASNQLKSVPDGIFDRLTSLQKIWLHTNP 529 (570)
T ss_dssp EECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred EeCCCCcCCCCCHHHhhcccCCcEEEecCCc
Confidence 9999887655555567888999999998854
No 20
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.93 E-value=1.5e-24 Score=235.85 Aligned_cols=298 Identities=19% Similarity=0.178 Sum_probs=177.4
Q ss_pred CceeEEEEEecccccccccccC-CCcccEEEeecCccccccccchhHHhcCCCcccEEEecCCcCcccCccCCCCCCcCe
Q 037018 321 ANVKRCFILEDLIDEFISLEHS-DMYLQSFLNHTLESDRLALIDCENFCKKFKHLRVLNLGSAILYQYPPGLENLFHLKY 399 (663)
Q Consensus 321 ~~~r~lsi~~~~~~~~~~~~~~-~~~lr~L~l~~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~l~~lp~~~~~l~~L~~ 399 (663)
..++++.+..+.+..++. .. +++++.|.+.++... .++.+ ..+++|++|++++|.+..++. ++.+++|++
T Consensus 46 ~~l~~L~l~~~~i~~l~~--~~~l~~L~~L~Ls~n~l~-----~~~~~-~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~ 116 (466)
T 1o6v_A 46 DQVTTLQADRLGIKSIDG--VEYLNNLTQINFSNNQLT-----DITPL-KNLTKLVDILMNNNQIADITP-LANLTNLTG 116 (466)
T ss_dssp HTCCEEECCSSCCCCCTT--GGGCTTCCEEECCSSCCC-----CCGGG-TTCTTCCEEECCSSCCCCCGG-GTTCTTCCE
T ss_pred ccccEEecCCCCCccCcc--hhhhcCCCEEECCCCccC-----Cchhh-hccccCCEEECCCCccccChh-hcCCCCCCE
Confidence 467777777776555542 22 778888888887664 23334 788888888888888776655 778888888
Q ss_pred EeccCCCCccchhhhcccccccEeeccCCcccccchhhhcCcCCcEEEccCCCCCCCCCCCcCCCCCCcEeeCcCCCCCC
Q 037018 400 LKLNIPSLNCLPSLLCTLLNLQTLEMPASYIDHSPEGIWMMQKLMHLNFGSINLPAPPKNYSSSLKNLIFISSLNPSSCT 479 (663)
Q Consensus 400 L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 479 (663)
|++++|.+..+|. ++++++|++|++++|.+..++. +..+++|++|+++ ++.... + .+..+++|+.|+++++.-..
T Consensus 117 L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~-~~~~~~-~-~~~~l~~L~~L~l~~n~l~~ 191 (466)
T 1o6v_A 117 LTLFNNQITDIDP-LKNLTNLNRLELSSNTISDISA-LSGLTSLQQLSFG-NQVTDL-K-PLANLTTLERLDISSNKVSD 191 (466)
T ss_dssp EECCSSCCCCCGG-GTTCTTCSEEEEEEEEECCCGG-GTTCTTCSEEEEE-ESCCCC-G-GGTTCTTCCEEECCSSCCCC
T ss_pred EECCCCCCCCChH-HcCCCCCCEEECCCCccCCChh-hccCCcccEeecC-CcccCc-h-hhccCCCCCEEECcCCcCCC
Confidence 8888888887764 7788888888888887666653 6666666666665 333221 1 15555566666665555111
Q ss_pred hhhcCCCCCccEEEeecCCCccccchh--------------------hhhcCCCCCCEEEEeecCccccccccccccccC
Q 037018 480 PDILGRLPNVQTLRISGDLSHYHSGVS--------------------KSLCELHKLECLQLVHEGRMWQLSRMVLSEYQF 539 (663)
Q Consensus 480 ~~~l~~l~~L~~L~l~~~~~~~~~~~~--------------------~~l~~l~~L~~L~l~~~~~l~~lp~~~~~l~~~ 539 (663)
...+..+++|+.|++++|. .....+ ..+..+++|+.|++++ +.+..++ .+..
T Consensus 192 ~~~l~~l~~L~~L~l~~n~--l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~-n~l~~~~----~~~~- 263 (466)
T 1o6v_A 192 ISVLAKLTNLESLIATNNQ--ISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLAN-NQISNLA----PLSG- 263 (466)
T ss_dssp CGGGGGCTTCSEEECCSSC--CCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCS-SCCCCCG----GGTT-
T ss_pred ChhhccCCCCCEEEecCCc--ccccccccccCCCCEEECCCCCcccchhhhcCCCCCEEECCC-Cccccch----hhhc-
Confidence 1234555555555555552 211111 1233444555555543 3444333 2333
Q ss_pred CCCceEEEEecccCCCCChhhhcCCCCCcEEEeecCCCCCceeeecCCCCCCcccEEEccCCCCccccccccccccccce
Q 037018 540 PPCLTQLSLSNTQLMEDPMPALEKLPHLEVLKLKQNSYSERKLACVGSGSFPQLKILHLKSMLWLEEWTMGAGAMPKLES 619 (663)
Q Consensus 540 l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~l~~L~~ 619 (663)
+++|+.|++++|.+.... .+..+++|+.|++++|.+.+..+ +..+++|+.|++++|. +..++. +..+++|+.
T Consensus 264 l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~L~~n~l~~~~~----~~~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~ 335 (466)
T 1o6v_A 264 LTKLTELKLGANQISNIS--PLAGLTALTNLELNENQLEDISP----ISNLKNLTYLTLYFNN-ISDISP-VSSLTKLQR 335 (466)
T ss_dssp CTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCSCCGG----GGGCTTCSEEECCSSC-CSCCGG-GGGCTTCCE
T ss_pred CCCCCEEECCCCccCccc--cccCCCccCeEEcCCCcccCchh----hcCCCCCCEEECcCCc-CCCchh-hccCccCCE
Confidence 555555555555543322 15555666666666555544322 3456667777777653 443332 556777777
Q ss_pred EEeecCCCCCCCccccCCCCCCCEEEecCCC
Q 037018 620 LIVNPCAYLRKLPEELWCIKSLCKLELHWPQ 650 (663)
Q Consensus 620 L~l~~c~~l~~l~~~l~~l~sL~~L~l~~c~ 650 (663)
|++++|... .+ ..+..+++|+.|++++|+
T Consensus 336 L~l~~n~l~-~~-~~l~~l~~L~~L~l~~n~ 364 (466)
T 1o6v_A 336 LFFYNNKVS-DV-SSLANLTNINWLSAGHNQ 364 (466)
T ss_dssp EECCSSCCC-CC-GGGTTCTTCCEEECCSSC
T ss_pred eECCCCccC-Cc-hhhccCCCCCEEeCCCCc
Confidence 777777533 33 356677788888887776
No 21
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.93 E-value=5.8e-25 Score=247.62 Aligned_cols=145 Identities=15% Similarity=0.102 Sum_probs=118.2
Q ss_pred EEEEecccccccccccCCCcccEEEeecCccccccccchhHHhcCCCcccEEEecCCcCccc-CccCCCCCCcCeEeccC
Q 037018 326 CFILEDLIDEFISLEHSDMYLQSFLNHTLESDRLALIDCENFCKKFKHLRVLNLGSAILYQY-PPGLENLFHLKYLKLNI 404 (663)
Q Consensus 326 lsi~~~~~~~~~~~~~~~~~lr~L~l~~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~l~~l-p~~~~~l~~L~~L~L~~ 404 (663)
+......+..++ ....++++.|.+.++.... ..+..+.++++|++|++++|.++.+ |..|+++++|++|++++
T Consensus 16 ~~c~~~~l~~ip--~~~~~~l~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~ 89 (606)
T 3vq2_A 16 YQCMDQKLSKVP--DDIPSSTKNIDLSFNPLKI----LKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTG 89 (606)
T ss_dssp EECTTSCCSSCC--TTSCTTCCEEECTTSCCCE----ECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTT
T ss_pred eEccCCCcccCC--CCCCCCcCEEECCCCCcCE----eChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCC
Confidence 333344445554 3337899999999998753 1133349999999999999999865 56799999999999999
Q ss_pred CCCccc-hhhhcccccccEeeccCCcccccc-hhhhcCcCCcEEEccCCCCCC-CCCCCcCCCCCCcEeeCcCCC
Q 037018 405 PSLNCL-PSLLCTLLNLQTLEMPASYIDHSP-EGIWMMQKLMHLNFGSINLPA-PPKNYSSSLKNLIFISSLNPS 476 (663)
Q Consensus 405 ~~i~~l-p~~i~~L~~L~~L~L~~~~l~~lp-~~l~~l~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~ 476 (663)
|.+..+ |..++++++|++|++++|.+..++ ..++++++|++|++++|.+.. .+|..++++++|++|+++++.
T Consensus 90 n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~ 164 (606)
T 3vq2_A 90 NPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNY 164 (606)
T ss_dssp CCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSC
T ss_pred CcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCc
Confidence 999977 788999999999999999887776 569999999999999665543 678899999999999998775
No 22
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=1.6e-24 Score=243.08 Aligned_cols=286 Identities=17% Similarity=0.179 Sum_probs=195.2
Q ss_pred CCcccEEEeecCccccccccch-hHHhcCCCcccEEEecCCcCcccC-ccCCCCCCcCeEeccCCCCccchh-hhccccc
Q 037018 343 DMYLQSFLNHTLESDRLALIDC-ENFCKKFKHLRVLNLGSAILYQYP-PGLENLFHLKYLKLNIPSLNCLPS-LLCTLLN 419 (663)
Q Consensus 343 ~~~lr~L~l~~~~~~~~~~~~l-~~~~~~l~~Lr~L~L~~~~l~~lp-~~~~~l~~L~~L~L~~~~i~~lp~-~i~~L~~ 419 (663)
.++++.+.+.++... .+ +.++..+++|++|++++|.+..++ ..++.+++|++|+|++|.+..+|. .++.+++
T Consensus 50 l~~l~~l~l~~~~l~-----~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 124 (597)
T 3oja_B 50 LNNQKIVTFKNSTMR-----KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPL 124 (597)
T ss_dssp GCCCSEEEESSCEES-----EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred CCCceEEEeeCCCCC-----CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCC
Confidence 556666666666543 22 344466677777777777766443 356667777777777776665543 3566777
Q ss_pred ccEeeccCCcccccchh-hhcCcCCcEEEccCCCCCCCCCCCcCCCCCCcEeeCcCCC-CCChhhcCCCCCccEEEeecC
Q 037018 420 LQTLEMPASYIDHSPEG-IWMMQKLMHLNFGSINLPAPPKNYSSSLKNLIFISSLNPS-SCTPDILGRLPNVQTLRISGD 497 (663)
Q Consensus 420 L~~L~L~~~~l~~lp~~-l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~ 497 (663)
|++|++++|.+..+|.. ++.+++|++|++++|.+....|..++.+++|+.|+++++. ... .++.+++|+.|++++|
T Consensus 125 L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~--~~~~l~~L~~L~l~~n 202 (597)
T 3oja_B 125 LTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV--DLSLIPSLFHANVSYN 202 (597)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC--CGGGCTTCSEEECCSS
T ss_pred CCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc--ChhhhhhhhhhhcccC
Confidence 77777777766666655 3667777777777444455555556667777777776665 222 1333444444444444
Q ss_pred CCc----------------cccchhhhhcCCCCCCEEEEeecCccccccccccccccCCCCceEEEEecccCCCCChhhh
Q 037018 498 LSH----------------YHSGVSKSLCELHKLECLQLVHEGRMWQLSRMVLSEYQFPPCLTQLSLSNTQLMEDPMPAL 561 (663)
Q Consensus 498 ~~~----------------~~~~~~~~l~~l~~L~~L~l~~~~~l~~lp~~~~~l~~~l~~L~~L~L~~~~l~~~~~~~l 561 (663)
.-. ....++.. ..++|+.|++++ +.++..+ ++.. +++|+.|++++|.+.+..+..+
T Consensus 203 ~l~~l~~~~~L~~L~ls~n~l~~~~~~--~~~~L~~L~L~~-n~l~~~~----~l~~-l~~L~~L~Ls~N~l~~~~~~~~ 274 (597)
T 3oja_B 203 LLSTLAIPIAVEELDASHNSINVVRGP--VNVELTILKLQH-NNLTDTA----WLLN-YPGLVEVDLSYNELEKIMYHPF 274 (597)
T ss_dssp CCSEEECCTTCSEEECCSSCCCEEECS--CCSCCCEEECCS-SCCCCCG----GGGG-CTTCSEEECCSSCCCEEESGGG
T ss_pred ccccccCCchhheeeccCCcccccccc--cCCCCCEEECCC-CCCCCCh----hhcc-CCCCCEEECCCCccCCCCHHHh
Confidence 200 11122221 135788888886 6666654 6777 9999999999999887778889
Q ss_pred cCCCCCcEEEeecCCCCCceeeecCCCCCCcccEEEccCCCCccccccccccccccceEEeecCCCCCCCccccCCCCCC
Q 037018 562 EKLPHLEVLKLKQNSYSERKLACVGSGSFPQLKILHLKSMLWLEEWTMGAGAMPKLESLIVNPCAYLRKLPEELWCIKSL 641 (663)
Q Consensus 562 ~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~l~~l~sL 641 (663)
+.+++|+.|+|++|.+.+.. .. ...+++|+.|+|++| .+..+|..+..+++|+.|++++|... .+| +..+++|
T Consensus 275 ~~l~~L~~L~Ls~N~l~~l~--~~-~~~l~~L~~L~Ls~N-~l~~i~~~~~~l~~L~~L~L~~N~l~-~~~--~~~~~~L 347 (597)
T 3oja_B 275 VKMQRLERLYISNNRLVALN--LY-GQPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYLDHNSIV-TLK--LSTHHTL 347 (597)
T ss_dssp TTCSSCCEEECTTSCCCEEE--CS-SSCCTTCCEEECCSS-CCCCCGGGHHHHTTCSEEECCSSCCC-CCC--CCTTCCC
T ss_pred cCccCCCEEECCCCCCCCCC--cc-cccCCCCcEEECCCC-CCCccCcccccCCCCCEEECCCCCCC-CcC--hhhcCCC
Confidence 99999999999999887643 22 467899999999996 57788888889999999999999854 344 6788999
Q ss_pred CEEEecCCC
Q 037018 642 CKLELHWPQ 650 (663)
Q Consensus 642 ~~L~l~~c~ 650 (663)
+.|++++||
T Consensus 348 ~~L~l~~N~ 356 (597)
T 3oja_B 348 KNLTLSHND 356 (597)
T ss_dssp SEEECCSSC
T ss_pred CEEEeeCCC
Confidence 999999988
No 23
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.93 E-value=9.9e-25 Score=243.23 Aligned_cols=309 Identities=15% Similarity=0.102 Sum_probs=192.5
Q ss_pred CCceeEEEEEecccccccccccC-CCcccEEEeecCccccccccchhHHhcCCCcccEEEecCCcCcccCccCCCCCCcC
Q 037018 320 LANVKRCFILEDLIDEFISLEHS-DMYLQSFLNHTLESDRLALIDCENFCKKFKHLRVLNLGSAILYQYPPGLENLFHLK 398 (663)
Q Consensus 320 ~~~~r~lsi~~~~~~~~~~~~~~-~~~lr~L~l~~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~l~~lp~~~~~l~~L~ 398 (663)
+..++++.+..+.+...+..... .++++.|.+.++.... ..+..+..+++|++|++++|.++.+|.. .+++|+
T Consensus 51 ~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~----~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~ 124 (562)
T 3a79_B 51 PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRS----LDFHVFLFNQDLEYLDVSHNRLQNISCC--PMASLR 124 (562)
T ss_dssp CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCE----ECTTTTTTCTTCCEEECTTSCCCEECSC--CCTTCS
T ss_pred CCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCc----CCHHHhCCCCCCCEEECCCCcCCccCcc--ccccCC
Confidence 35566666666665555432222 6667777776665542 1133336666777777777766666655 566777
Q ss_pred eEeccCCCCccch--hhhcccccccEeeccCCcccccchhhhcCcCC--cEEEccCCCC--CCCCCCCcCCC--------
Q 037018 399 YLKLNIPSLNCLP--SLLCTLLNLQTLEMPASYIDHSPEGIWMMQKL--MHLNFGSINL--PAPPKNYSSSL-------- 464 (663)
Q Consensus 399 ~L~L~~~~i~~lp--~~i~~L~~L~~L~L~~~~l~~lp~~l~~l~~L--~~L~l~~~~~--~~~~~~~l~~l-------- 464 (663)
+|++++|.+..+| ..++++++|++|++++|.+... .+..+++| ++|++++|.. ....|..+..+
T Consensus 125 ~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~--~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~ 202 (562)
T 3a79_B 125 HLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL--DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLV 202 (562)
T ss_dssp EEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT--TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEE
T ss_pred EEECCCCCccccCchHhhcccCcccEEecCCCccccC--chhhhhhceeeEEEeecccccccccCcccccccCcceEEEE
Confidence 7777777666543 5666677777777766654432 23333444 5555553333 22222222221
Q ss_pred ------------------C-------------------------------------------------------CCcEee
Q 037018 465 ------------------K-------------------------------------------------------NLIFIS 471 (663)
Q Consensus 465 ------------------~-------------------------------------------------------~L~~L~ 471 (663)
+ +|++|+
T Consensus 203 l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~ 282 (562)
T 3a79_B 203 FHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLN 282 (562)
T ss_dssp ECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEE
T ss_pred ecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEE
Confidence 1 333333
Q ss_pred CcCCC--CCChhhc-----------------------------------------------------CCCCCccEEEeec
Q 037018 472 SLNPS--SCTPDIL-----------------------------------------------------GRLPNVQTLRISG 496 (663)
Q Consensus 472 l~~~~--~~~~~~l-----------------------------------------------------~~l~~L~~L~l~~ 496 (663)
+.++. +.+|..+ +.+++|+.|++++
T Consensus 283 l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~ 362 (562)
T 3a79_B 283 IYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQ 362 (562)
T ss_dssp EEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCS
T ss_pred EeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCCCceEEECCC
Confidence 33333 1222221 4566677777777
Q ss_pred CCCccccchhhhhcCCCCCCEEEEeecCcccccc---ccccccccCCCCceEEEEecccCCC-CChhhhcCCCCCcEEEe
Q 037018 497 DLSHYHSGVSKSLCELHKLECLQLVHEGRMWQLS---RMVLSEYQFPPCLTQLSLSNTQLME-DPMPALEKLPHLEVLKL 572 (663)
Q Consensus 497 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~lp---~~~~~l~~~l~~L~~L~L~~~~l~~-~~~~~l~~l~~L~~L~L 572 (663)
| ......+..+..+++|+.|++++ +.++.++ . .+.. +++|+.|++++|.+.. .....+..+++|+.|++
T Consensus 363 n--~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~---~~~~-l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l 435 (562)
T 3a79_B 363 N--VFTDSVFQGCSTLKRLQTLILQR-NGLKNFFKVAL---MTKN-MSSLETLDVSLNSLNSHAYDRTCAWAESILVLNL 435 (562)
T ss_dssp S--CCCTTTTTTCCSCSSCCEEECCS-SCCCBTTHHHH---TTTT-CTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEEC
T ss_pred C--ccccchhhhhcccCCCCEEECCC-CCcCCcccchh---hhcC-CCCCCEEECCCCcCCCccChhhhcCcccCCEEEC
Confidence 6 34445566667777777777775 5665433 3 4555 7777777777777665 33334667777777777
Q ss_pred ecCCCCCceeeecCCCCC-CcccEEEccCCCCccccccccccccccceEEeecCCCCCCCccc-cCCCCCCCEEEecCCC
Q 037018 573 KQNSYSERKLACVGSGSF-PQLKILHLKSMLWLEEWTMGAGAMPKLESLIVNPCAYLRKLPEE-LWCIKSLCKLELHWPQ 650 (663)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~-~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~-l~~l~sL~~L~l~~c~ 650 (663)
++|.+++..+ ..+ ++|+.|++++| .++.+|..+..+++|+.|++++|... .+|.. +..+++|+.|+++++|
T Consensus 436 ~~n~l~~~~~-----~~l~~~L~~L~L~~N-~l~~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~ 508 (562)
T 3a79_B 436 SSNMLTGSVF-----RCLPPKVKVLDLHNN-RIMSIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNP 508 (562)
T ss_dssp CSSCCCGGGG-----SSCCTTCSEEECCSS-CCCCCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECCSCC
T ss_pred CCCCCCcchh-----hhhcCcCCEEECCCC-cCcccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEecCCC
Confidence 7777765442 234 68999999986 67889988889999999999999754 68876 8899999999999976
No 24
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.93 E-value=1.4e-24 Score=239.78 Aligned_cols=142 Identities=12% Similarity=0.012 Sum_probs=114.3
Q ss_pred eEEEEEecccccccccccCCCcccEEEeecCccccccccchhHHhcCCCcccEEEecCCcCccc-CccCCCCCCcCeEec
Q 037018 324 KRCFILEDLIDEFISLEHSDMYLQSFLNHTLESDRLALIDCENFCKKFKHLRVLNLGSAILYQY-PPGLENLFHLKYLKL 402 (663)
Q Consensus 324 r~lsi~~~~~~~~~~~~~~~~~lr~L~l~~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~l~~l-p~~~~~l~~L~~L~L 402 (663)
+++.+..+.+..++ ....++++.|.+.++.... ..+..+..+++|++|++++|.++.+ |..++++++|++|++
T Consensus 3 ~~l~ls~n~l~~ip--~~~~~~L~~L~Ls~n~i~~----~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 76 (520)
T 2z7x_B 3 FLVDRSKNGLIHVP--KDLSQKTTILNISQNYISE----LWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDL 76 (520)
T ss_dssp CEEECTTSCCSSCC--CSCCTTCSEEECCSSCCCC----CCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEEC
T ss_pred ceEecCCCCccccc--ccccccccEEECCCCcccc----cChhhccccccccEEecCCCccCCcChHHhhcccCCCEEec
Confidence 45666666666655 3336899999999998752 1234449999999999999999855 678999999999999
Q ss_pred cCCCCccchhhhcccccccEeeccCCcccc--cchhhhcCcCCcEEEccCCCCCCCCCCCcCCCCCC--cEeeCcCCC
Q 037018 403 NIPSLNCLPSLLCTLLNLQTLEMPASYIDH--SPEGIWMMQKLMHLNFGSINLPAPPKNYSSSLKNL--IFISSLNPS 476 (663)
Q Consensus 403 ~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~--lp~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L--~~L~l~~~~ 476 (663)
++|.++.+|.. .+++|++|++++|.+.. +|..++.+++|++|++++|.+.. ..+..+++| +.|++.++.
T Consensus 77 s~N~l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~ 149 (520)
T 2z7x_B 77 SHNKLVKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGE 149 (520)
T ss_dssp CSSCCCEEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECT
T ss_pred CCCceeecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeeccc
Confidence 99999999977 89999999999998765 57889999999999999555433 346667777 888887763
No 25
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.92 E-value=6.9e-25 Score=238.00 Aligned_cols=296 Identities=15% Similarity=0.086 Sum_probs=234.1
Q ss_pred CCCcccEEEeecCccccccccchhHHhcCCCcccEEEecCCcCc-cc-CccCCCCCCcCeEeccCCCCccc-hhhhcccc
Q 037018 342 SDMYLQSFLNHTLESDRLALIDCENFCKKFKHLRVLNLGSAILY-QY-PPGLENLFHLKYLKLNIPSLNCL-PSLLCTLL 418 (663)
Q Consensus 342 ~~~~lr~L~l~~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~l~-~l-p~~~~~l~~L~~L~L~~~~i~~l-p~~i~~L~ 418 (663)
..++++.|.+.++.... ..+..+.++++|++|++++|.+. .+ +..+..+++|++|++++|.+..+ |..+++++
T Consensus 28 l~~~l~~L~Ls~n~i~~----~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 103 (455)
T 3v47_A 28 LPAHVNYVDLSLNSIAE----LNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLA 103 (455)
T ss_dssp CCTTCCEEECCSSCCCE----ECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCT
T ss_pred CCCccCEEEecCCccCc----CChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcc
Confidence 36899999999998753 12444499999999999999976 55 46689999999999999999966 78899999
Q ss_pred cccEeeccCCcccc-cchh--hhcCcCCcEEEccCCCCCCCCCCC-cCCCCCCcEeeCcCCC--CCChhhcCCC--CCcc
Q 037018 419 NLQTLEMPASYIDH-SPEG--IWMMQKLMHLNFGSINLPAPPKNY-SSSLKNLIFISSLNPS--SCTPDILGRL--PNVQ 490 (663)
Q Consensus 419 ~L~~L~L~~~~l~~-lp~~--l~~l~~L~~L~l~~~~~~~~~~~~-l~~l~~L~~L~l~~~~--~~~~~~l~~l--~~L~ 490 (663)
+|++|++++|.+.. .|.. +..+++|++|++++|.+....|.. +..+++|++|++.++. ...+..+..+ ++|+
T Consensus 104 ~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~ 183 (455)
T 3v47_A 104 NLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFT 183 (455)
T ss_dssp TCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEE
T ss_pred cCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccc
Confidence 99999999997765 4444 889999999999966666666665 8899999999999988 4455566655 6899
Q ss_pred EEEeecCCCccccchh--------hhhcCCCCCCEEEEeecCccc-ccccccccccc-----------------------
Q 037018 491 TLRISGDLSHYHSGVS--------KSLCELHKLECLQLVHEGRMW-QLSRMVLSEYQ----------------------- 538 (663)
Q Consensus 491 ~L~l~~~~~~~~~~~~--------~~l~~l~~L~~L~l~~~~~l~-~lp~~~~~l~~----------------------- 538 (663)
.|+++++. .....+ ..+..+++|++|++++ +.+. ..|. .+..
T Consensus 184 ~L~l~~n~--l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~-n~l~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~~ 257 (455)
T 3v47_A 184 LLRLSSIT--LQDMNEYWLGWEKCGNPFKNTSITTLDLSG-NGFKESMAK---RFFDAIAGTKIQSLILSNSYNMGSSFG 257 (455)
T ss_dssp EEECTTCB--CTTCSTTCTTHHHHCCTTTTCEEEEEECTT-SCCCHHHHH---HHHHHTTTCCEEEEECTTCTTTSCCTT
T ss_pred ccccccCc--ccccchhhccccccccccccceeeeEecCC-Ccccccchh---hhhccccccceeeEeeccccccccccc
Confidence 99999983 222111 2234568899999997 5443 2221 1110
Q ss_pred ---------------CCCCceEEEEecccCCCCChhhhcCCCCCcEEEeecCCCCCceeeecCCCCCCcccEEEccCCCC
Q 037018 539 ---------------FPPCLTQLSLSNTQLMEDPMPALEKLPHLEVLKLKQNSYSERKLACVGSGSFPQLKILHLKSMLW 603 (663)
Q Consensus 539 ---------------~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~ 603 (663)
..++|+.|++++|.+....+..++.+++|+.|++++|.+.+..+.. +..+++|+.|+|++|.
T Consensus 258 ~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~--~~~l~~L~~L~Ls~N~- 334 (455)
T 3v47_A 258 HTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNA--FWGLTHLLKLNLSQNF- 334 (455)
T ss_dssp CCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTT--TTTCTTCCEEECCSSC-
T ss_pred hhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhH--hcCcccCCEEECCCCc-
Confidence 0268999999999988778888999999999999999988654433 6789999999999974
Q ss_pred cccc-ccccccccccceEEeecCCCCCCCccccCCCCCCCEEEecCCC
Q 037018 604 LEEW-TMGAGAMPKLESLIVNPCAYLRKLPEELWCIKSLCKLELHWPQ 650 (663)
Q Consensus 604 l~~l-~~~~~~l~~L~~L~l~~c~~l~~l~~~l~~l~sL~~L~l~~c~ 650 (663)
+..+ +..+..+++|+.|++++|......|..+..+++|++|++++|.
T Consensus 335 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~ 382 (455)
T 3v47_A 335 LGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQ 382 (455)
T ss_dssp CCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred cCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCc
Confidence 4544 6678899999999999998766668889999999999999986
No 26
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.92 E-value=3.7e-24 Score=233.68 Aligned_cols=271 Identities=17% Similarity=0.162 Sum_probs=228.9
Q ss_pred CCcccEEEecCCcCccc-CccCCCCCCcCeEeccCCCCccc-hhhhcccccccEeeccCCcccccchh-hhcCcCCcEEE
Q 037018 371 FKHLRVLNLGSAILYQY-PPGLENLFHLKYLKLNIPSLNCL-PSLLCTLLNLQTLEMPASYIDHSPEG-IWMMQKLMHLN 447 (663)
Q Consensus 371 l~~Lr~L~L~~~~l~~l-p~~~~~l~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~l~~lp~~-l~~l~~L~~L~ 447 (663)
.+++++|++++|.++.+ +..|..+++|++|+|++|.+..+ |..++++++|++|++++|.+..+|.. +..+++|++|+
T Consensus 31 ~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 110 (477)
T 2id5_A 31 PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLD 110 (477)
T ss_dssp CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEE
T ss_pred CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEE
Confidence 36899999999999966 56799999999999999999976 78899999999999999999988865 78999999999
Q ss_pred ccCCCCCCCCCCCcCCCCCCcEeeCcCCC--CCChhhcCCCCCccEEEeecCCCccccchhhhhcCCCCCCEEEEeecCc
Q 037018 448 FGSINLPAPPKNYSSSLKNLIFISSLNPS--SCTPDILGRLPNVQTLRISGDLSHYHSGVSKSLCELHKLECLQLVHEGR 525 (663)
Q Consensus 448 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 525 (663)
+++|.+....+..+..+++|+.|++.++. ...+..+..+++|+.|++++| ......+..+..+++|+.|++++ +.
T Consensus 111 Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n--~l~~~~~~~l~~l~~L~~L~l~~-n~ 187 (477)
T 2id5_A 111 ISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKC--NLTSIPTEALSHLHGLIVLRLRH-LN 187 (477)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESC--CCSSCCHHHHTTCTTCCEEEEES-CC
T ss_pred CCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCC--cCcccChhHhcccCCCcEEeCCC-Cc
Confidence 99666666777889999999999999988 344567899999999999999 45555556788999999999997 77
Q ss_pred cccccccccccccCCCCceEEEEecccCCCCChhhhcCCCCCcEEEeecCCCCCceeeecCCCCCCcccEEEccCCCCcc
Q 037018 526 MWQLSRMVLSEYQFPPCLTQLSLSNTQLMEDPMPALEKLPHLEVLKLKQNSYSERKLACVGSGSFPQLKILHLKSMLWLE 605 (663)
Q Consensus 526 l~~lp~~~~~l~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~ 605 (663)
+..++.. .+.. +++|+.|++++|......+.......+|+.|++++|.+....... +..+++|+.|+|++|. +.
T Consensus 188 i~~~~~~--~~~~-l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~--~~~l~~L~~L~Ls~n~-l~ 261 (477)
T 2id5_A 188 INAIRDY--SFKR-LYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLA--VRHLVYLRFLNLSYNP-IS 261 (477)
T ss_dssp CCEECTT--CSCS-CTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHH--HTTCTTCCEEECCSSC-CC
T ss_pred CcEeChh--hccc-CcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHH--hcCccccCeeECCCCc-CC
Confidence 7766541 5666 999999999999876666666666679999999999988644333 5789999999999965 55
Q ss_pred ccc-cccccccccceEEeecCCCCCCCccccCCCCCCCEEEecCCC
Q 037018 606 EWT-MGAGAMPKLESLIVNPCAYLRKLPEELWCIKSLCKLELHWPQ 650 (663)
Q Consensus 606 ~l~-~~~~~l~~L~~L~l~~c~~l~~l~~~l~~l~sL~~L~l~~c~ 650 (663)
.++ ..+..+++|+.|++++|......|..+..+++|+.|++++|.
T Consensus 262 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 307 (477)
T 2id5_A 262 TIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQ 307 (477)
T ss_dssp EECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSC
T ss_pred ccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCc
Confidence 554 468899999999999998777667889999999999999985
No 27
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.92 E-value=8.1e-24 Score=230.15 Aligned_cols=299 Identities=19% Similarity=0.194 Sum_probs=224.6
Q ss_pred CCceeEEEEEecccccccccccC-CCcccEEEeecCccccccccchhHHhcCCCcccEEEecCCcCcccCccCCCCCCcC
Q 037018 320 LANVKRCFILEDLIDEFISLEHS-DMYLQSFLNHTLESDRLALIDCENFCKKFKHLRVLNLGSAILYQYPPGLENLFHLK 398 (663)
Q Consensus 320 ~~~~r~lsi~~~~~~~~~~~~~~-~~~lr~L~l~~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~l~~lp~~~~~l~~L~ 398 (663)
..+++++.+..+.+...+. .. +++++.|.+.++... .++.+ ..+++|++|++++|.++.++. +..+++|+
T Consensus 67 l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~-----~~~~~-~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~ 137 (466)
T 1o6v_A 67 LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIA-----DITPL-ANLTNLTGLTLFNNQITDIDP-LKNLTNLN 137 (466)
T ss_dssp CTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-----CCGGG-TTCTTCCEEECCSSCCCCCGG-GTTCTTCS
T ss_pred hcCCCEEECCCCccCCchh--hhccccCCEEECCCCccc-----cChhh-cCCCCCCEEECCCCCCCCChH-HcCCCCCC
Confidence 4567777777776666553 22 677777777777654 22333 777777777777777765543 66777777
Q ss_pred eEeccCCCCccchh--------------------hhcccccccEeeccCCcccccchhhhcCcCCcEEEccCCCCCCCCC
Q 037018 399 YLKLNIPSLNCLPS--------------------LLCTLLNLQTLEMPASYIDHSPEGIWMMQKLMHLNFGSINLPAPPK 458 (663)
Q Consensus 399 ~L~L~~~~i~~lp~--------------------~i~~L~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~ 458 (663)
+|++++|.+..+|. .++++++|+.|++++|.+..++ .+..+++|++|++++|... ..+
T Consensus 138 ~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~-~~~ 215 (466)
T 1o6v_A 138 RLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDIS-VLAKLTNLESLIATNNQIS-DIT 215 (466)
T ss_dssp EEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCC-CCG
T ss_pred EEECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCCh-hhccCCCCCEEEecCCccc-ccc
Confidence 77777766654432 2566778888888888777765 4778888889988844333 333
Q ss_pred CCcCCCCCCcEeeCcCCCCCChhhcCCCCCccEEEeecCCCccccchhhhhcCCCCCCEEEEeecCcccccccccccccc
Q 037018 459 NYSSSLKNLIFISSLNPSSCTPDILGRLPNVQTLRISGDLSHYHSGVSKSLCELHKLECLQLVHEGRMWQLSRMVLSEYQ 538 (663)
Q Consensus 459 ~~l~~l~~L~~L~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~lp~~~~~l~~ 538 (663)
. ++.+++|+.|++.++.-.....+..+++|+.|++++|. ... .+. +..+++|+.|++++ +.+..+| .+..
T Consensus 216 ~-~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~--l~~-~~~-~~~l~~L~~L~l~~-n~l~~~~----~~~~ 285 (466)
T 1o6v_A 216 P-LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQ--ISN-LAP-LSGLTKLTELKLGA-NQISNIS----PLAG 285 (466)
T ss_dssp G-GGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSC--CCC-CGG-GTTCTTCSEEECCS-SCCCCCG----GGTT
T ss_pred c-ccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCc--ccc-chh-hhcCCCCCEEECCC-CccCccc----cccC
Confidence 3 67788999999988882223567889999999999983 333 232 77899999999997 7888777 4666
Q ss_pred CCCCceEEEEecccCCCCChhhhcCCCCCcEEEeecCCCCCceeeecCCCCCCcccEEEccCCCCccccccccccccccc
Q 037018 539 FPPCLTQLSLSNTQLMEDPMPALEKLPHLEVLKLKQNSYSERKLACVGSGSFPQLKILHLKSMLWLEEWTMGAGAMPKLE 618 (663)
Q Consensus 539 ~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~l~~L~ 618 (663)
+++|+.|++++|.+.+.. .+..+++|+.|++++|.+.+..+ +..+++|+.|++++| .+..++ .+..+++|+
T Consensus 286 -l~~L~~L~L~~n~l~~~~--~~~~l~~L~~L~L~~n~l~~~~~----~~~l~~L~~L~l~~n-~l~~~~-~l~~l~~L~ 356 (466)
T 1o6v_A 286 -LTALTNLELNENQLEDIS--PISNLKNLTYLTLYFNNISDISP----VSSLTKLQRLFFYNN-KVSDVS-SLANLTNIN 356 (466)
T ss_dssp -CTTCSEEECCSSCCSCCG--GGGGCTTCSEEECCSSCCSCCGG----GGGCTTCCEEECCSS-CCCCCG-GGTTCTTCC
T ss_pred -CCccCeEEcCCCcccCch--hhcCCCCCCEEECcCCcCCCchh----hccCccCCEeECCCC-ccCCch-hhccCCCCC
Confidence 899999999999986543 38899999999999999887553 368999999999997 566664 678999999
Q ss_pred eEEeecCCCCCCCccccCCCCCCCEEEecCCC
Q 037018 619 SLIVNPCAYLRKLPEELWCIKSLCKLELHWPQ 650 (663)
Q Consensus 619 ~L~l~~c~~l~~l~~~l~~l~sL~~L~l~~c~ 650 (663)
.|++++|+.....| +..+++|+.|++++|+
T Consensus 357 ~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~ 386 (466)
T 1o6v_A 357 WLSAGHNQISDLTP--LANLTRITQLGLNDQA 386 (466)
T ss_dssp EEECCSSCCCBCGG--GTTCTTCCEEECCCEE
T ss_pred EEeCCCCccCccch--hhcCCCCCEEeccCCc
Confidence 99999998766555 7899999999999986
No 28
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.92 E-value=2.1e-24 Score=241.09 Aligned_cols=160 Identities=16% Similarity=0.145 Sum_probs=130.8
Q ss_pred CCCCCccEEEeecCCCccccchhhhhcCCCCCCEEEEeecCccccccccccccccCCCCceEEEEecccCCCCCh-hhhc
Q 037018 484 GRLPNVQTLRISGDLSHYHSGVSKSLCELHKLECLQLVHEGRMWQLSRMVLSEYQFPPCLTQLSLSNTQLMEDPM-PALE 562 (663)
Q Consensus 484 ~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~lp~~~~~l~~~l~~L~~L~L~~~~l~~~~~-~~l~ 562 (663)
..+++|+.|++++|.-......+..+..+++|++|++++ +.+..+|. .+.. +++|+.|++++|.+....+ ..+.
T Consensus 344 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~-n~l~~~~~---~~~~-l~~L~~L~l~~n~l~~~~~~~~~~ 418 (570)
T 2z63_A 344 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSF-NGVITMSS---NFLG-LEQLEHLDFQHSNLKQMSEFSVFL 418 (570)
T ss_dssp CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCS-CSEEEEEE---EEET-CTTCCEEECTTSEEESCTTSCTTT
T ss_pred ccCCCCCEEeCcCCccCccccccccccccCccCEEECCC-Cccccccc---cccc-cCCCCEEEccCCccccccchhhhh
Confidence 456777788887773111122367788899999999997 78888887 7778 9999999999998766544 4688
Q ss_pred CCCCCcEEEeecCCCCCceeeecCCCCCCcccEEEccCCCCc-cccccccccccccceEEeecCCCCCCCccccCCCCCC
Q 037018 563 KLPHLEVLKLKQNSYSERKLACVGSGSFPQLKILHLKSMLWL-EEWTMGAGAMPKLESLIVNPCAYLRKLPEELWCIKSL 641 (663)
Q Consensus 563 ~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l-~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~l~~l~sL 641 (663)
.+++|+.|++++|.+.+..+.. +..+++|+.|++++|... ..+|..+..+++|+.|++++|......|..+..+++|
T Consensus 419 ~l~~L~~L~l~~n~l~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 496 (570)
T 2z63_A 419 SLRNLIYLDISHTHTRVAFNGI--FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL 496 (570)
T ss_dssp TCTTCCEEECTTSCCEECCTTT--TTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred cCCCCCEEeCcCCcccccchhh--hhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCC
Confidence 9999999999999887655443 678999999999997644 3688889999999999999998777668889999999
Q ss_pred CEEEecCCC
Q 037018 642 CKLELHWPQ 650 (663)
Q Consensus 642 ~~L~l~~c~ 650 (663)
+.|++++|.
T Consensus 497 ~~L~l~~n~ 505 (570)
T 2z63_A 497 QVLNMASNQ 505 (570)
T ss_dssp CEEECCSSC
T ss_pred CEEeCCCCc
Confidence 999999986
No 29
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.92 E-value=2.2e-24 Score=223.02 Aligned_cols=233 Identities=23% Similarity=0.235 Sum_probs=172.6
Q ss_pred cCCCcccEEEecCCcCcccCccCCCCCCcCeEeccCCCCccchhhhcccccccEeeccCCcccccchhhhcCcCCcEEEc
Q 037018 369 KKFKHLRVLNLGSAILYQYPPGLENLFHLKYLKLNIPSLNCLPSLLCTLLNLQTLEMPASYIDHSPEGIWMMQKLMHLNF 448 (663)
Q Consensus 369 ~~l~~Lr~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~l 448 (663)
...++++.|+++++.++.+|..++++++|++|++++|.+..+|..++++++|++|++++|.+..+|..++.+++|++|++
T Consensus 78 ~~~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 78 ATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSI 157 (328)
T ss_dssp HTSTTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEE
T ss_pred ccccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEEC
Confidence 35688999999999999999999999999999999999999999999999999999999988899999999999999999
Q ss_pred cCCCCCCCCCCCcCCCCCCcEeeCcCCCCCChhhcCCCCCccEEEeecCCCccccchhhhhcCCCCCCEEEEeecCcccc
Q 037018 449 GSINLPAPPKNYSSSLKNLIFISSLNPSSCTPDILGRLPNVQTLRISGDLSHYHSGVSKSLCELHKLECLQLVHEGRMWQ 528 (663)
Q Consensus 449 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~ 528 (663)
++|+....+|..+... . .. ..+..+++|++|++++ +.++.
T Consensus 158 ~~n~~~~~~p~~~~~~------~-------~~--------------------------~~~~~l~~L~~L~L~~-n~l~~ 197 (328)
T 4fcg_A 158 RACPELTELPEPLAST------D-------AS--------------------------GEHQGLVNLQSLRLEW-TGIRS 197 (328)
T ss_dssp EEETTCCCCCSCSEEE------C--------C--------------------------CCEEESTTCCEEEEEE-ECCCC
T ss_pred CCCCCccccChhHhhc------c-------ch--------------------------hhhccCCCCCEEECcC-CCcCc
Confidence 9656677777644321 0 00 1123455566666665 55556
Q ss_pred ccccccccccCCCCceEEEEecccCCCCChhhhcCCCCCcEEEeecCCCCCceeeecCCCCCCcccEEEccCCCCccccc
Q 037018 529 LSRMVLSEYQFPPCLTQLSLSNTQLMEDPMPALEKLPHLEVLKLKQNSYSERKLACVGSGSFPQLKILHLKSMLWLEEWT 608 (663)
Q Consensus 529 lp~~~~~l~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~ 608 (663)
+|. .+.. +++|+.|++++|.+.. .+..++.+++|+.|++++|.+.+..+.. +..+++|+.|+|++|+....+|
T Consensus 198 lp~---~l~~-l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~--~~~l~~L~~L~L~~n~~~~~~p 270 (328)
T 4fcg_A 198 LPA---SIAN-LQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPI--FGGRAPLKRLILKDCSNLLTLP 270 (328)
T ss_dssp CCG---GGGG-CTTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCC--TTCCCCCCEEECTTCTTCCBCC
T ss_pred chH---hhcC-CCCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHH--hcCCCCCCEEECCCCCchhhcc
Confidence 665 5666 6666666666666553 3345666677777777766666554443 5667777777777777777777
Q ss_pred cccccccccceEEeecCCCCCCCccccCCCCCCCEEEecC
Q 037018 609 MGAGAMPKLESLIVNPCAYLRKLPEELWCIKSLCKLELHW 648 (663)
Q Consensus 609 ~~~~~l~~L~~L~l~~c~~l~~l~~~l~~l~sL~~L~l~~ 648 (663)
..+..+++|+.|++++|+.++.+|..+.++++|+.+++..
T Consensus 271 ~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~ 310 (328)
T 4fcg_A 271 LDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPP 310 (328)
T ss_dssp TTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCG
T ss_pred hhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCH
Confidence 7777777777777777777777777777777777777654
No 30
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.92 E-value=3.5e-24 Score=238.78 Aligned_cols=306 Identities=14% Similarity=0.074 Sum_probs=202.7
Q ss_pred eeEEEEEecccccccccccCCCcccEEEeecCccccccccchhHHhcCCCcccEEEecCCcCccc-CccCCCCCCcCeEe
Q 037018 323 VKRCFILEDLIDEFISLEHSDMYLQSFLNHTLESDRLALIDCENFCKKFKHLRVLNLGSAILYQY-PPGLENLFHLKYLK 401 (663)
Q Consensus 323 ~r~lsi~~~~~~~~~~~~~~~~~lr~L~l~~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~l~~l-p~~~~~l~~L~~L~ 401 (663)
.+++.+..+.+..++ ....++++.|.+.++.... ..+..+..+++|++|++++|.++.+ |..++.+++|++|+
T Consensus 33 ~~~l~ls~~~L~~ip--~~~~~~L~~L~Ls~N~i~~----~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 106 (562)
T 3a79_B 33 ESMVDYSNRNLTHVP--KDLPPRTKALSLSQNSISE----LRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLD 106 (562)
T ss_dssp CCEEECTTSCCCSCC--TTSCTTCCEEECCSSCCCC----CCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEE
T ss_pred CcEEEcCCCCCccCC--CCCCCCcCEEECCCCCccc----cChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEE
Confidence 377777777767666 3337899999999998753 1133449999999999999999965 67799999999999
Q ss_pred ccCCCCccchhhhcccccccEeeccCCcccccc--hhhhcCcCCcEEEccCCCCCCCCCCCcCCCCCC--cEeeCcCCCC
Q 037018 402 LNIPSLNCLPSLLCTLLNLQTLEMPASYIDHSP--EGIWMMQKLMHLNFGSINLPAPPKNYSSSLKNL--IFISSLNPSS 477 (663)
Q Consensus 402 L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp--~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L--~~L~l~~~~~ 477 (663)
+++|.++.+|.. .+++|++|++++|.+..+| ..++++++|++|++++|.+... .+..+++| +.|++.++.-
T Consensus 107 Ls~N~l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l 181 (562)
T 3a79_B 107 VSHNRLQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSY 181 (562)
T ss_dssp CTTSCCCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSC
T ss_pred CCCCcCCccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccc
Confidence 999999999977 8999999999999887764 7899999999999996555432 34455555 8888877631
Q ss_pred ----CChhhcC--------------------------CCC----------------------------------------
Q 037018 478 ----CTPDILG--------------------------RLP---------------------------------------- 487 (663)
Q Consensus 478 ----~~~~~l~--------------------------~l~---------------------------------------- 487 (663)
..+..+. .++
T Consensus 182 ~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l 261 (562)
T 3a79_B 182 HIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIET 261 (562)
T ss_dssp CCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEE
T ss_pred cccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcC
Confidence 1112221 222
Q ss_pred ---------------CccEEEeecCCCccccchhhhh-------------------------------------------
Q 037018 488 ---------------NVQTLRISGDLSHYHSGVSKSL------------------------------------------- 509 (663)
Q Consensus 488 ---------------~L~~L~l~~~~~~~~~~~~~~l------------------------------------------- 509 (663)
+|+.|++++| ...+.+|..+
T Consensus 262 ~~~~~~~~~~~~~~~~L~~L~l~~n--~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~ 339 (562)
T 3a79_B 262 TWKCSVKLFQFFWPRPVEYLNIYNL--TITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSIS 339 (562)
T ss_dssp CHHHHHHHHHHHTTSSEEEEEEEEE--EECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEE
T ss_pred cHHHHHHHHHhhhcccccEEEEecc--EeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEcc
Confidence 3444444443 1111222211
Q ss_pred ----------cCCCCCCEEEEeecCcccc-ccccccccccCCCCceEEEEecccCCCCC--hhhhcCCCCCcEEEeecCC
Q 037018 510 ----------CELHKLECLQLVHEGRMWQ-LSRMVLSEYQFPPCLTQLSLSNTQLMEDP--MPALEKLPHLEVLKLKQNS 576 (663)
Q Consensus 510 ----------~~l~~L~~L~l~~~~~l~~-lp~~~~~l~~~l~~L~~L~L~~~~l~~~~--~~~l~~l~~L~~L~L~~~~ 576 (663)
..+++|++|++++ +.+.. +|. .+.. +++|+.|++++|.+.... +..+.++++|+.|++++|.
T Consensus 340 ~n~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~---~~~~-l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~ 414 (562)
T 3a79_B 340 DTPFIHMVCPPSPSSFTFLNFTQ-NVFTDSVFQ---GCST-LKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNS 414 (562)
T ss_dssp SSCCCCCCCCSSCCCCCEEECCS-SCCCTTTTT---TCCS-CSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSC
T ss_pred CCCcccccCccCCCCceEEECCC-Cccccchhh---hhcc-cCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCc
Confidence 3445555566554 44433 444 5555 666666666666654322 2345566666666666666
Q ss_pred CCCceeeecCCCCCCcccEEEccCCCCccccccccccccccceEEeecCCCCCCCccccCCCCCCCEEEecCCC
Q 037018 577 YSERKLACVGSGSFPQLKILHLKSMLWLEEWTMGAGAMPKLESLIVNPCAYLRKLPEELWCIKSLCKLELHWPQ 650 (663)
Q Consensus 577 ~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~l~~l~sL~~L~l~~c~ 650 (663)
+.+..+... +..+++|+.|++++|......+..+. ++|+.|++++|. ++.+|..+..+++|+.|++++|.
T Consensus 415 l~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~-l~~ip~~~~~l~~L~~L~L~~N~ 484 (562)
T 3a79_B 415 LNSHAYDRT-CAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNR-IMSIPKDVTHLQALQELNVASNQ 484 (562)
T ss_dssp CBSCCSSCC-CCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSC-CCCCCTTTTSSCCCSEEECCSSC
T ss_pred CCCccChhh-hcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCc-CcccChhhcCCCCCCEEECCCCC
Confidence 655333222 45566666666666543233333222 688888888885 55788877788999999998876
No 31
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.92 E-value=1.8e-23 Score=243.96 Aligned_cols=313 Identities=21% Similarity=0.219 Sum_probs=228.0
Q ss_pred CCCceeEEEEEecccccccccccC-CCcccEEEeecCccccccccch-hHHhcCCCcccEEEecCCcCcc-cCccCCCCC
Q 037018 319 TLANVKRCFILEDLIDEFISLEHS-DMYLQSFLNHTLESDRLALIDC-ENFCKKFKHLRVLNLGSAILYQ-YPPGLENLF 395 (663)
Q Consensus 319 ~~~~~r~lsi~~~~~~~~~~~~~~-~~~lr~L~l~~~~~~~~~~~~l-~~~~~~l~~Lr~L~L~~~~l~~-lp~~~~~l~ 395 (663)
.+..++++.+..+.+....+.... +++|+.|.+.++.... .+ +..+.++++|++|+|++|.+.. .|..+++++
T Consensus 22 lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~----~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~ 97 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPL----TIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLF 97 (844)
T ss_dssp SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCC----EECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCS
T ss_pred CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCcc----ccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCc
Confidence 667899999999987776543434 9999999999985421 33 4444999999999999999984 478899999
Q ss_pred CcCeEeccCCCCcc-chhh--hcccccccEeeccCCccccc--chhhhcCcCCcEEEccCCCCCCCCCCCcCCC--CCCc
Q 037018 396 HLKYLKLNIPSLNC-LPSL--LCTLLNLQTLEMPASYIDHS--PEGIWMMQKLMHLNFGSINLPAPPKNYSSSL--KNLI 468 (663)
Q Consensus 396 ~L~~L~L~~~~i~~-lp~~--i~~L~~L~~L~L~~~~l~~l--p~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l--~~L~ 468 (663)
+|++|++++|.+.. +|.. ++++++|++|++++|.+..+ +..++++++|++|++++|.+....+..+..+ ++|+
T Consensus 98 ~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~ 177 (844)
T 3j0a_A 98 HLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLS 177 (844)
T ss_dssp SCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSC
T ss_pred ccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccc
Confidence 99999999999884 5554 88999999999999977665 3568999999999999666667777777766 7888
Q ss_pred EeeCcCCC--CCChhhcCCCCC------ccEEEeecCCCccccchhh---------------------------------
Q 037018 469 FISSLNPS--SCTPDILGRLPN------VQTLRISGDLSHYHSGVSK--------------------------------- 507 (663)
Q Consensus 469 ~L~l~~~~--~~~~~~l~~l~~------L~~L~l~~~~~~~~~~~~~--------------------------------- 507 (663)
.|++..+. ...+..++.+++ |+.|++++|. .....+.
T Consensus 178 ~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~--l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~ 255 (844)
T 3j0a_A 178 FFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNG--WTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDP 255 (844)
T ss_dssp CCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCC--SSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTG
T ss_pred eEECCCCccccccccchhhcCCccccCceeEEecCCCc--CchhHHHHHHhhcCcccccceecccccccccccccccCCC
Confidence 88888777 444455555544 8888888773 1111111
Q ss_pred ---hhcC--CCCCCEEEEeecCccccc-cccccccccCCCCceEEEEecccCCCCChhhhcCCCCCcEEEeecCCCCCce
Q 037018 508 ---SLCE--LHKLECLQLVHEGRMWQL-SRMVLSEYQFPPCLTQLSLSNTQLMEDPMPALEKLPHLEVLKLKQNSYSERK 581 (663)
Q Consensus 508 ---~l~~--l~~L~~L~l~~~~~l~~l-p~~~~~l~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~ 581 (663)
.+.. .++|+.|++++ +.+..+ |. .+.. +++|+.|++++|.+....+..+.++++|+.|+|++|.+.+..
T Consensus 256 ~~~~f~~l~~~~L~~L~Ls~-n~l~~~~~~---~~~~-l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 330 (844)
T 3j0a_A 256 DQNTFAGLARSSVRHLDLSH-GFVFSLNSR---VFET-LKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELY 330 (844)
T ss_dssp GGTTTTTTTTSCCCEEECTT-CCCCEECSC---CSSS-CCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCC
T ss_pred ChhhhhccccCCccEEECCC-CcccccChh---hhhc-CCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccC
Confidence 1111 25788888886 555544 33 5666 888888888888877766777888888888888888776554
Q ss_pred eeecCCCCCCcccEEEccCCCCccccc-cccccccccceEEeecCCCCCCCccccCCCCCCCEEEecCCC
Q 037018 582 LACVGSGSFPQLKILHLKSMLWLEEWT-MGAGAMPKLESLIVNPCAYLRKLPEELWCIKSLCKLELHWPQ 650 (663)
Q Consensus 582 ~~~~~~~~~~~L~~L~L~~~~~l~~l~-~~~~~l~~L~~L~l~~c~~l~~l~~~l~~l~sL~~L~l~~c~ 650 (663)
+.. +..+++|+.|++++| .+..++ ..+..+++|+.|++++|... .++ .+++|+.|++++|.
T Consensus 331 ~~~--~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~N~l~-~i~----~~~~L~~L~l~~N~ 392 (844)
T 3j0a_A 331 SSN--FYGLPKVAYIDLQKN-HIAIIQDQTFKFLEKLQTLDLRDNALT-TIH----FIPSIPDIFLSGNK 392 (844)
T ss_dssp SCS--CSSCTTCCEEECCSC-CCCCCCSSCSCSCCCCCEEEEETCCSC-CCS----SCCSCSEEEEESCC
T ss_pred HHH--hcCCCCCCEEECCCC-CCCccChhhhcCCCCCCEEECCCCCCC-ccc----CCCCcchhccCCCC
Confidence 433 577888888888886 455444 35677888888888887643 232 25666666666554
No 32
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.91 E-value=1.1e-23 Score=223.85 Aligned_cols=263 Identities=17% Similarity=0.136 Sum_probs=212.6
Q ss_pred cCCCcccEEEecCCcCcccCcc-CCCCCCcCeEeccCCCCccch-hhhcccccccEeeccCCcccccch-hhhcCcCCcE
Q 037018 369 KKFKHLRVLNLGSAILYQYPPG-LENLFHLKYLKLNIPSLNCLP-SLLCTLLNLQTLEMPASYIDHSPE-GIWMMQKLMH 445 (663)
Q Consensus 369 ~~l~~Lr~L~L~~~~l~~lp~~-~~~l~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~l~~lp~-~l~~l~~L~~ 445 (663)
..++++++|+++++.++.+|.. +..+++|++|++++|.+..++ ..++.+++|++|++++|.+..+|. .+..+++|++
T Consensus 42 ~~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 121 (390)
T 3o6n_A 42 ITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 121 (390)
T ss_dssp GGGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred cccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCE
Confidence 3578999999999999988876 688999999999999999876 488999999999999998887754 4899999999
Q ss_pred EEccCCCCCCCCCCC-cCCCCCCcEeeCcCCC--CCChhhcCCCCCccEEEeecCCCccccchhhhhcCCCCC-------
Q 037018 446 LNFGSINLPAPPKNY-SSSLKNLIFISSLNPS--SCTPDILGRLPNVQTLRISGDLSHYHSGVSKSLCELHKL------- 515 (663)
Q Consensus 446 L~l~~~~~~~~~~~~-l~~l~~L~~L~l~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L------- 515 (663)
|+++ ++....+|.. ++.+++|++|++.++. ...+..++.+++|+.|++++|. .... .+..+++|
T Consensus 122 L~L~-~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~--l~~~---~~~~l~~L~~L~l~~ 195 (390)
T 3o6n_A 122 LVLE-RNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR--LTHV---DLSLIPSLFHANVSY 195 (390)
T ss_dssp EECC-SSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSC--CSBC---CGGGCTTCSEEECCS
T ss_pred EECC-CCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCc--CCcc---ccccccccceeeccc
Confidence 9999 4455566655 5899999999999998 4445668999999999999984 2222 12334444
Q ss_pred ------------CEEEEeecCccccccccccccccCCCCceEEEEecccCCCCChhhhcCCCCCcEEEeecCCCCCceee
Q 037018 516 ------------ECLQLVHEGRMWQLSRMVLSEYQFPPCLTQLSLSNTQLMEDPMPALEKLPHLEVLKLKQNSYSERKLA 583 (663)
Q Consensus 516 ------------~~L~l~~~~~l~~lp~~~~~l~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~ 583 (663)
++|++++ +.+..+|. .. +++|+.|++++|.+.+. ..+..+++|+.|++++|.+.+..+.
T Consensus 196 n~l~~~~~~~~L~~L~l~~-n~l~~~~~-----~~-~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~ 266 (390)
T 3o6n_A 196 NLLSTLAIPIAVEELDASH-NSINVVRG-----PV-NVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYH 266 (390)
T ss_dssp SCCSEEECCSSCSEEECCS-SCCCEEEC-----CC-CSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESG
T ss_pred ccccccCCCCcceEEECCC-Ceeeeccc-----cc-cccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChh
Confidence 4555553 44444443 12 56899999999987653 6789999999999999988775544
Q ss_pred ecCCCCCCcccEEEccCCCCccccccccccccccceEEeecCCCCCCCccccCCCCCCCEEEecCCC
Q 037018 584 CVGSGSFPQLKILHLKSMLWLEEWTMGAGAMPKLESLIVNPCAYLRKLPEELWCIKSLCKLELHWPQ 650 (663)
Q Consensus 584 ~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~l~~l~sL~~L~l~~c~ 650 (663)
. +..+++|+.|++++| .+..++.....+|+|+.|++++|. +..+|..+..+++|+.|++++|+
T Consensus 267 ~--~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~l~~L~~L~L~~N~ 329 (390)
T 3o6n_A 267 P--FVKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHNH-LLHVERNQPQFDRLENLYLDHNS 329 (390)
T ss_dssp G--GTTCSSCCEEECCSS-CCCEEECSSSCCTTCCEEECCSSC-CCCCGGGHHHHTTCSEEECCSSC
T ss_pred H--ccccccCCEEECCCC-cCcccCcccCCCCCCCEEECCCCc-ceecCccccccCcCCEEECCCCc
Confidence 3 678999999999995 678888888899999999999996 55688888889999999999987
No 33
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.91 E-value=1.2e-23 Score=245.27 Aligned_cols=309 Identities=16% Similarity=0.115 Sum_probs=238.8
Q ss_pred ecccccccccccCCCcccEEEeecCccccccccchhHHhcCCCcccEEEecCCcC-ccc-CccCCCCCCcCeEeccCCCC
Q 037018 330 EDLIDEFISLEHSDMYLQSFLNHTLESDRLALIDCENFCKKFKHLRVLNLGSAIL-YQY-PPGLENLFHLKYLKLNIPSL 407 (663)
Q Consensus 330 ~~~~~~~~~~~~~~~~lr~L~l~~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~l-~~l-p~~~~~l~~L~~L~L~~~~i 407 (663)
...+..++. ..++++.|.+.++....+ .+..+.++++|++|++++|.. ..+ |..++++++|++|+|++|.+
T Consensus 13 ~~~L~~vP~---lp~~l~~LdLs~N~i~~i----~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l 85 (844)
T 3j0a_A 13 FCNLTQVPQ---VLNTTERLLLSFNYIRTV----TASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKI 85 (844)
T ss_dssp CCCSSCCCS---SCTTCCEEEEESCCCCEE----CSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCC
T ss_pred CCCCCCCCC---CCCCcCEEECCCCcCCcc----ChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcC
Confidence 334455552 578999999999987531 133349999999999999964 466 67799999999999999999
Q ss_pred ccc-hhhhcccccccEeeccCCcccc-cchh--hhcCcCCcEEEccCCCCCCCCC-CCcCCCCCCcEeeCcCCC--CCCh
Q 037018 408 NCL-PSLLCTLLNLQTLEMPASYIDH-SPEG--IWMMQKLMHLNFGSINLPAPPK-NYSSSLKNLIFISSLNPS--SCTP 480 (663)
Q Consensus 408 ~~l-p~~i~~L~~L~~L~L~~~~l~~-lp~~--l~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~--~~~~ 480 (663)
..+ |..++++++|++|++++|.+.. +|.. +.++++|++|++++|.+....+ ..++++++|++|+++++. ...+
T Consensus 86 ~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~ 165 (844)
T 3j0a_A 86 YFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCE 165 (844)
T ss_dssp CEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCS
T ss_pred cccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCH
Confidence 966 8899999999999999997764 5554 8899999999999665544433 578999999999999987 5556
Q ss_pred hhcCCC--CCccEEEeecCCCccccchhhhhcCCCC------CCEEEEeecCccc-cccccc------------------
Q 037018 481 DILGRL--PNVQTLRISGDLSHYHSGVSKSLCELHK------LECLQLVHEGRMW-QLSRMV------------------ 533 (663)
Q Consensus 481 ~~l~~l--~~L~~L~l~~~~~~~~~~~~~~l~~l~~------L~~L~l~~~~~l~-~lp~~~------------------ 533 (663)
..++.+ ++|+.|++++| ......+..+..+.+ |+.|++++ +.+. .+|..+
T Consensus 166 ~~l~~l~~~~L~~L~L~~n--~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~-n~l~~~~~~~~~~~l~~~~l~~L~l~~~~ 242 (844)
T 3j0a_A 166 HELEPLQGKTLSFFSLAAN--SLYSRVSVDWGKCMNPFRNMVLEILDVSG-NGWTVDITGNFSNAISKSQAFSLILAHHI 242 (844)
T ss_dssp GGGHHHHHCSSCCCEECCS--BSCCCCCCCCCSSSCTTTTCCBSEEBCSS-CCSSTTTTSGGGGTSCSCCBSEEECCSSC
T ss_pred HHcccccCCccceEECCCC--ccccccccchhhcCCccccCceeEEecCC-CcCchhHHHHHHhhcCcccccceeccccc
Confidence 667666 89999999998 455555555555444 99999997 4322 222100
Q ss_pred ---------------cccccC-CCCceEEEEecccCCCCChhhhcCCCCCcEEEeecCCCCCceeeecCCCCCCcccEEE
Q 037018 534 ---------------LSEYQF-PPCLTQLSLSNTQLMEDPMPALEKLPHLEVLKLKQNSYSERKLACVGSGSFPQLKILH 597 (663)
Q Consensus 534 ---------------~~l~~~-l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~ 597 (663)
..+... .++|+.|++++|.+....+..+..+++|+.|+|++|.+.+..+.. +.++++|+.|+
T Consensus 243 ~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~--~~~l~~L~~L~ 320 (844)
T 3j0a_A 243 MGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEA--FYGLDNLQVLN 320 (844)
T ss_dssp CBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTT--TTTCSSCCEEE
T ss_pred ccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHH--hcCCCCCCEEE
Confidence 001110 268999999999987777788999999999999999987654433 67899999999
Q ss_pred ccCCCCccccccccccccccceEEeecCCCCCCCccccCCCCCCCEEEecCCC
Q 037018 598 LKSMLWLEEWTMGAGAMPKLESLIVNPCAYLRKLPEELWCIKSLCKLELHWPQ 650 (663)
Q Consensus 598 L~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~l~~l~sL~~L~l~~c~ 650 (663)
|++|..-...+..+..+++|+.|++++|......+..+..+++|+.|++++|.
T Consensus 321 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 373 (844)
T 3j0a_A 321 LSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNA 373 (844)
T ss_dssp EESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCC
T ss_pred CCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCC
Confidence 99975433447788999999999999997654445568899999999999987
No 34
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.91 E-value=4.7e-23 Score=213.64 Aligned_cols=262 Identities=15% Similarity=0.169 Sum_probs=140.7
Q ss_pred CcccEEEecCCcCcccCc-cCCCCCCcCeEeccCCCCccc-hhhhcccccccEeeccCCcccccchhhhcCcCCcEEEcc
Q 037018 372 KHLRVLNLGSAILYQYPP-GLENLFHLKYLKLNIPSLNCL-PSLLCTLLNLQTLEMPASYIDHSPEGIWMMQKLMHLNFG 449 (663)
Q Consensus 372 ~~Lr~L~L~~~~l~~lp~-~~~~l~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~l~ 449 (663)
++|++|++++|.++.++. .++.+++|++|++++|.++.+ |..++.+++|++|++++|.+..+|..+. ++|++|+++
T Consensus 52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~--~~L~~L~l~ 129 (330)
T 1xku_A 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMP--KTLQELRVH 129 (330)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCC--TTCCEEECC
T ss_pred CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhc--ccccEEECC
Confidence 456666666666664443 456666666666666666654 5556666666666666666656655433 566666666
Q ss_pred CCCCCCCCCCCcCCCCCCcEeeCcCCC-C---CChhhcCCCCCccEEEeecCCCccccchhhhhcCCCCCCEEEEeecCc
Q 037018 450 SINLPAPPKNYSSSLKNLIFISSLNPS-S---CTPDILGRLPNVQTLRISGDLSHYHSGVSKSLCELHKLECLQLVHEGR 525 (663)
Q Consensus 450 ~~~~~~~~~~~l~~l~~L~~L~l~~~~-~---~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 525 (663)
+|.+....+..+..+++|+.|++.++. . ..+..++.+++|+.|++++|. ...++..+. ++|++|++++ +.
T Consensus 130 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~---l~~l~~~~~--~~L~~L~l~~-n~ 203 (330)
T 1xku_A 130 ENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN---ITTIPQGLP--PSLTELHLDG-NK 203 (330)
T ss_dssp SSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC---CCSCCSSCC--TTCSEEECTT-SC
T ss_pred CCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCc---cccCCcccc--ccCCEEECCC-Cc
Confidence 333333333345566666666666655 1 334455566666666666652 222333222 5666666664 44
Q ss_pred cccc-cccccccccCCCCceEEEEecccCCCCChhhhcCCCCCcEEEeecCCCCCceeeecCCCCCCcccEEEccCCCCc
Q 037018 526 MWQL-SRMVLSEYQFPPCLTQLSLSNTQLMEDPMPALEKLPHLEVLKLKQNSYSERKLACVGSGSFPQLKILHLKSMLWL 604 (663)
Q Consensus 526 l~~l-p~~~~~l~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l 604 (663)
++.+ |. .+.. +++|+.|++++|.+....+..+..+++|+.|++++|.+.... . . +..+++|+.|++++| .+
T Consensus 204 l~~~~~~---~~~~-l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp-~-~-l~~l~~L~~L~l~~N-~i 275 (330)
T 1xku_A 204 ITKVDAA---SLKG-LNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVP-G-G-LADHKYIQVVYLHNN-NI 275 (330)
T ss_dssp CCEECTG---GGTT-CTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCC-T-T-TTTCSSCCEEECCSS-CC
T ss_pred CCccCHH---HhcC-CCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCC-h-h-hccCCCcCEEECCCC-cC
Confidence 5444 33 4555 666666666666655544445566666666666666555221 1 1 345566666666654 34
Q ss_pred cccccc-cc------cccccceEEeecCCCCC--CCccccCCCCCCCEEEecCC
Q 037018 605 EEWTMG-AG------AMPKLESLIVNPCAYLR--KLPEELWCIKSLCKLELHWP 649 (663)
Q Consensus 605 ~~l~~~-~~------~l~~L~~L~l~~c~~l~--~l~~~l~~l~sL~~L~l~~c 649 (663)
..++.. +. ..+.|+.|++++|+... ..|..+..+++|+.++++++
T Consensus 276 ~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 276 SAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp CCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC---
T ss_pred CccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEeccc
Confidence 443321 11 23556666666665432 22345555666666666553
No 35
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.91 E-value=2.5e-23 Score=237.56 Aligned_cols=317 Identities=16% Similarity=0.088 Sum_probs=187.2
Q ss_pred CCCceeEEEEEecccccccccccC-CCcccEEEeecCccccccccchhHHhcCCCcccEEEecCCcCcccCc-cCCCCCC
Q 037018 319 TLANVKRCFILEDLIDEFISLEHS-DMYLQSFLNHTLESDRLALIDCENFCKKFKHLRVLNLGSAILYQYPP-GLENLFH 396 (663)
Q Consensus 319 ~~~~~r~lsi~~~~~~~~~~~~~~-~~~lr~L~l~~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~l~~lp~-~~~~l~~ 396 (663)
.+.+++++.+..+.+...+..... ++++++|.+.++.... ..+..+.++++|++|++++|.++.+|. .++++++
T Consensus 23 ~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~ 98 (680)
T 1ziw_A 23 LPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISK----LEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTN 98 (680)
T ss_dssp SCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCC----CCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred cCCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCc----cCHHHHhcccCcCEEECCCCccCccChhhhccCCC
Confidence 446677777777776665533233 6777777777776542 113334777778888888777776665 4777778
Q ss_pred cCeEeccCCCCccch-hhhcccccccEeeccCCccccc-chhhhcCcCCcEEEccCCCCCCCCCCCc--CCCCCCcEeeC
Q 037018 397 LKYLKLNIPSLNCLP-SLLCTLLNLQTLEMPASYIDHS-PEGIWMMQKLMHLNFGSINLPAPPKNYS--SSLKNLIFISS 472 (663)
Q Consensus 397 L~~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~l~~l-p~~l~~l~~L~~L~l~~~~~~~~~~~~l--~~l~~L~~L~l 472 (663)
|++|++++|.+..+| ..++++++|++|++++|.+... |..++++++|++|++++|.+....+..+ ..+++|+.|++
T Consensus 99 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L 178 (680)
T 1ziw_A 99 LTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLEL 178 (680)
T ss_dssp CSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEEC
T ss_pred CCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEEC
Confidence 888888877777665 5677777888888877755444 4446677778888877444333333333 24567777777
Q ss_pred cCCC--CCChhhcCCCCCccEEEeecCCCccccch----hhhhcCCCCCCEEEEeecCccccc-cccccccccCCC--Cc
Q 037018 473 LNPS--SCTPDILGRLPNVQTLRISGDLSHYHSGV----SKSLCELHKLECLQLVHEGRMWQL-SRMVLSEYQFPP--CL 543 (663)
Q Consensus 473 ~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~~----~~~l~~l~~L~~L~l~~~~~l~~l-p~~~~~l~~~l~--~L 543 (663)
.++. ...+..++.+++|+.|.+.++. ..... +..+ ..++|+.|++++ +.+..+ |. ++.. ++ +|
T Consensus 179 ~~n~l~~~~~~~~~~l~~L~~L~l~~~~--l~~~~~~~~~~~l-~~~~L~~L~L~~-n~l~~~~~~---~~~~-l~~~~L 250 (680)
T 1ziw_A 179 SSNQIKEFSPGCFHAIGRLFGLFLNNVQ--LGPSLTEKLCLEL-ANTSIRNLSLSN-SQLSTTSNT---TFLG-LKWTNL 250 (680)
T ss_dssp TTCCCCCBCTTGGGGSSEECEEECTTCC--CHHHHHHHHHHHH-TTSCCCEEECTT-SCCCEECTT---TTGG-GGGSCC
T ss_pred CCCcccccChhhhhhhhhhhhhhccccc--cChhhHHHHHHHh-hhccccEEEccC-CcccccChh---Hhhc-cCcCCC
Confidence 7776 3344455556666666555542 11111 1111 235666666665 444432 33 4443 33 37
Q ss_pred eEEEEecccCCCCChhhhcCCCCCcEEEeecCCCCCceeeecCCCCCCcccEEEccCCCCcc-----cccc----ccccc
Q 037018 544 TQLSLSNTQLMEDPMPALEKLPHLEVLKLKQNSYSERKLACVGSGSFPQLKILHLKSMLWLE-----EWTM----GAGAM 614 (663)
Q Consensus 544 ~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~-----~l~~----~~~~l 614 (663)
+.|++++|.+....+..++.+++|+.|++++|.+.+..+.. +.++++|+.|+++++..-. .+|. .+..+
T Consensus 251 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~--~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l 328 (680)
T 1ziw_A 251 TMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHS--LHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWL 328 (680)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTT--TTTCTTCCEEECTTCBCCC------CCEECTTTTTTC
T ss_pred CEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhh--hcCCCCccEEeccchhhhcccccccccccChhhcccC
Confidence 77777776665555556666677777777666665433322 4566666666666532111 1221 34556
Q ss_pred cccceEEeecCCCCCCCccccCCCCCCCEEEecCC
Q 037018 615 PKLESLIVNPCAYLRKLPEELWCIKSLCKLELHWP 649 (663)
Q Consensus 615 ~~L~~L~l~~c~~l~~l~~~l~~l~sL~~L~l~~c 649 (663)
++|+.|++++|......+..+..+++|++|++++|
T Consensus 329 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 363 (680)
T 1ziw_A 329 KCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNS 363 (680)
T ss_dssp TTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTC
T ss_pred CCCCEEECCCCccCCCChhHhccccCCcEEECCCC
Confidence 66666666666654444445566666666666655
No 36
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.91 E-value=6.2e-23 Score=221.78 Aligned_cols=290 Identities=15% Similarity=0.065 Sum_probs=225.4
Q ss_pred CCceeEEEEEecccccccccccC-CCcccEEEeecCccccccccchhHHhcCCCcccEEEecCCcCcccCccCCCCCCcC
Q 037018 320 LANVKRCFILEDLIDEFISLEHS-DMYLQSFLNHTLESDRLALIDCENFCKKFKHLRVLNLGSAILYQYPPGLENLFHLK 398 (663)
Q Consensus 320 ~~~~r~lsi~~~~~~~~~~~~~~-~~~lr~L~l~~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~l~~lp~~~~~l~~L~ 398 (663)
..+++++.+..+.+.+.+ ... +++++.|.+.++.... ++ + ..+++|++|++++|.++.++ ++.+++|+
T Consensus 41 l~~L~~L~Ls~n~l~~~~--~l~~l~~L~~L~Ls~n~l~~-----~~-~-~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~ 109 (457)
T 3bz5_A 41 LATLTSLDCHNSSITDMT--GIEKLTGLTKLICTSNNITT-----LD-L-SQNTNLTYLACDSNKLTNLD--VTPLTKLT 109 (457)
T ss_dssp HTTCCEEECCSSCCCCCT--TGGGCTTCSEEECCSSCCSC-----CC-C-TTCTTCSEEECCSSCCSCCC--CTTCTTCC
T ss_pred cCCCCEEEccCCCcccCh--hhcccCCCCEEEccCCcCCe-----Ec-c-ccCCCCCEEECcCCCCceee--cCCCCcCC
Confidence 467888888888777664 223 8899999999988753 22 4 88899999999999988765 88899999
Q ss_pred eEeccCCCCccchhhhcccccccEeeccCCcccccchhhhcCcCCcEEEccCCCCCCCCCCCcCCCCCCcEeeCcCCC-C
Q 037018 399 YLKLNIPSLNCLPSLLCTLLNLQTLEMPASYIDHSPEGIWMMQKLMHLNFGSINLPAPPKNYSSSLKNLIFISSLNPS-S 477 (663)
Q Consensus 399 ~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~ 477 (663)
+|++++|.++.+| ++.+++|++|++++|.+..++ ++.+++|++|++++|.....+ .++.+++|+.|+++++. .
T Consensus 110 ~L~L~~N~l~~l~--~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~ 183 (457)
T 3bz5_A 110 YLNCDTNKLTKLD--VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKIT 183 (457)
T ss_dssp EEECCSSCCSCCC--CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCC
T ss_pred EEECCCCcCCeec--CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccc
Confidence 9999999999886 888999999999999888775 778999999999955455555 47788999999999988 5
Q ss_pred CChhhcCCCCCccEEEeecCCCccccchhhhhcCCCCCCEEEEeecCccccccccccccccCCCCceEEEEecccCCCCC
Q 037018 478 CTPDILGRLPNVQTLRISGDLSHYHSGVSKSLCELHKLECLQLVHEGRMWQLSRMVLSEYQFPPCLTQLSLSNTQLMEDP 557 (663)
Q Consensus 478 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~lp~~~~~l~~~l~~L~~L~L~~~~l~~~~ 557 (663)
.++ ++.+++|+.|++++|. ... + .+..+++|+.|++++ +.++.+| +.. +++|+.|++++|.+.+..
T Consensus 184 ~l~--l~~l~~L~~L~l~~N~--l~~-~--~l~~l~~L~~L~Ls~-N~l~~ip-----~~~-l~~L~~L~l~~N~l~~~~ 249 (457)
T 3bz5_A 184 ELD--VSQNKLLNRLNCDTNN--ITK-L--DLNQNIQLTFLDCSS-NKLTEID-----VTP-LTQLTYFDCSVNPLTELD 249 (457)
T ss_dssp CCC--CTTCTTCCEEECCSSC--CSC-C--CCTTCTTCSEEECCS-SCCSCCC-----CTT-CTTCSEEECCSSCCSCCC
T ss_pred eec--cccCCCCCEEECcCCc--CCe-e--ccccCCCCCEEECcC-CcccccC-----ccc-cCCCCEEEeeCCcCCCcC
Confidence 544 8889999999999983 332 2 377889999999997 7888776 345 889999999999987654
Q ss_pred hhhhcCCCCCcEEEeec----------CCCCCceeeecCCCCCCcccEEEccCCCCcccccc--------ccccccccce
Q 037018 558 MPALEKLPHLEVLKLKQ----------NSYSERKLACVGSGSFPQLKILHLKSMLWLEEWTM--------GAGAMPKLES 619 (663)
Q Consensus 558 ~~~l~~l~~L~~L~L~~----------~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~--------~~~~l~~L~~ 619 (663)
+ +.+++|+.|++++ |.+.+..+ .+.+++|+.|++++|..+..+|. .+..+++|+.
T Consensus 250 ~---~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~----~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~ 322 (457)
T 3bz5_A 250 V---STLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ----AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVY 322 (457)
T ss_dssp C---TTCTTCCEEECTTCCCSCCCCTTCTTCCEEE----CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCE
T ss_pred H---HHCCCCCEEeccCCCCCEEECCCCccCCccc----ccccccCCEEECCCCcccceeccCCCcceEechhhcccCCE
Confidence 3 4455555555444 44333322 45789999999999987776664 2456788999
Q ss_pred EEeecCCCCCCCccccCCCCCCCEEEecCCC
Q 037018 620 LIVNPCAYLRKLPEELWCIKSLCKLELHWPQ 650 (663)
Q Consensus 620 L~l~~c~~l~~l~~~l~~l~sL~~L~l~~c~ 650 (663)
|++++|.... ++ +.++++|+.|+++++.
T Consensus 323 L~L~~N~l~~-l~--l~~l~~L~~L~l~~N~ 350 (457)
T 3bz5_A 323 LYLNNTELTE-LD--VSHNTKLKSLSCVNAH 350 (457)
T ss_dssp EECTTCCCSC-CC--CTTCTTCSEEECCSSC
T ss_pred EECCCCcccc-cc--cccCCcCcEEECCCCC
Confidence 9999887544 54 8889999999998876
No 37
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.91 E-value=1.5e-23 Score=233.16 Aligned_cols=322 Identities=18% Similarity=0.149 Sum_probs=198.4
Q ss_pred CCCceeEEEEEecccccccccccC-CCcccEEEeecCccccccccchhHHhcCCCcccEEEecCCcCcccCcc-CCCCCC
Q 037018 319 TLANVKRCFILEDLIDEFISLEHS-DMYLQSFLNHTLESDRLALIDCENFCKKFKHLRVLNLGSAILYQYPPG-LENLFH 396 (663)
Q Consensus 319 ~~~~~r~lsi~~~~~~~~~~~~~~-~~~lr~L~l~~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~l~~lp~~-~~~l~~ 396 (663)
.+..++++.+..+.+....+.... ++++++|.+.++.... ..+..+..+++|++|++++|.+..++.. ++.+++
T Consensus 24 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~----~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 99 (549)
T 2z81_A 24 LTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINT----IEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSS 99 (549)
T ss_dssp CCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCE----ECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTT
T ss_pred CCCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCc----cChhhccccccCCEEECCCCccCccCHHHhccCCC
Confidence 345788888888877666533333 8889999998887652 1133348888999999999988866654 888899
Q ss_pred cCeEeccCCCCcc--chhhhcccccccEeeccCCc-ccccc-hhhhcCcCCcEEEccCCCCCCCCCCCcCCCCCCcEeeC
Q 037018 397 LKYLKLNIPSLNC--LPSLLCTLLNLQTLEMPASY-IDHSP-EGIWMMQKLMHLNFGSINLPAPPKNYSSSLKNLIFISS 472 (663)
Q Consensus 397 L~~L~L~~~~i~~--lp~~i~~L~~L~~L~L~~~~-l~~lp-~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 472 (663)
|++|++++|.+.. .|..++++++|++|++++|. ++.+| ..+..+++|++|++++|.+....|..++.+++|++|++
T Consensus 100 L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l 179 (549)
T 2z81_A 100 LKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTL 179 (549)
T ss_dssp CCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEE
T ss_pred CcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEec
Confidence 9999999988884 46678888999999998884 77776 46888889999999866666667777877777777777
Q ss_pred cCCC-CCChhhc-CCCCCccEEEeecCCCcccc-------------------------------chhhhhcCCCCCCEEE
Q 037018 473 LNPS-SCTPDIL-GRLPNVQTLRISGDLSHYHS-------------------------------GVSKSLCELHKLECLQ 519 (663)
Q Consensus 473 ~~~~-~~~~~~l-~~l~~L~~L~l~~~~~~~~~-------------------------------~~~~~l~~l~~L~~L~ 519 (663)
..+. ...+..+ +.+++|+.|++++|. ... .++..+..+++|+.|+
T Consensus 180 ~~n~~~~~~~~~~~~l~~L~~L~L~~n~--l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~ 257 (549)
T 2z81_A 180 HLSESAFLLEIFADILSSVRYLELRDTN--LARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVE 257 (549)
T ss_dssp ECSBSTTHHHHHHHSTTTBSEEEEESCB--CTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEE
T ss_pred ccCcccccchhhHhhcccccEEEccCCc--cccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccc
Confidence 6665 3333322 346666666666652 111 0111222334444444
Q ss_pred EeecCcccccccc-------------cc--------------------ccccCCCCceEEEEecccCCCCChhhhcCCCC
Q 037018 520 LVHEGRMWQLSRM-------------VL--------------------SEYQFPPCLTQLSLSNTQLMEDPMPALEKLPH 566 (663)
Q Consensus 520 l~~~~~l~~lp~~-------------~~--------------------~l~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~ 566 (663)
+++ +.+..++.. +. .... .++|+.|++++|.+.......+..+++
T Consensus 258 l~~-~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~-~~~L~~L~l~~n~l~~ip~~~~~~l~~ 335 (549)
T 2z81_A 258 FDD-CTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSL-LEKVKRITVENSKVFLVPCSFSQHLKS 335 (549)
T ss_dssp EES-CEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHH-STTCCEEEEESSCCCCCCHHHHHHCTT
T ss_pred ccc-ccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhh-cccceEEEeccCccccCCHHHHhcCcc
Confidence 443 111111000 00 0011 245566666666554333333356677
Q ss_pred CcEEEeecCCCCCceeee-cCCCCCCcccEEEccCCCCccccc---cccccccccceEEeecCCCCCCCccccCCCCCCC
Q 037018 567 LEVLKLKQNSYSERKLAC-VGSGSFPQLKILHLKSMLWLEEWT---MGAGAMPKLESLIVNPCAYLRKLPEELWCIKSLC 642 (663)
Q Consensus 567 L~~L~L~~~~~~~~~~~~-~~~~~~~~L~~L~L~~~~~l~~l~---~~~~~l~~L~~L~l~~c~~l~~l~~~l~~l~sL~ 642 (663)
|+.|++++|.+.+..+.. ...+.+++|+.|++++| .+..++ ..+..+++|+.|++++|. ++.+|..+..+++|+
T Consensus 336 L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~~~~L~ 413 (549)
T 2z81_A 336 LEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQN-HLRSMQKTGEILLTLKNLTSLDISRNT-FHPMPDSCQWPEKMR 413 (549)
T ss_dssp CCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTS-CCCCHHHHHHHGGGCTTCCEEECTTCC-CCCCCSCCCCCTTCC
T ss_pred ccEEEccCCccccccccchhhhhccccCcEEEccCC-cccccccchhhhhcCCCCCEEECCCCC-CccCChhhccccccc
Confidence 777777766665543211 00355666777777664 444443 235566667777776664 335666666666666
Q ss_pred EEEecCCC
Q 037018 643 KLELHWPQ 650 (663)
Q Consensus 643 ~L~l~~c~ 650 (663)
.|++++|.
T Consensus 414 ~L~Ls~N~ 421 (549)
T 2z81_A 414 FLNLSSTG 421 (549)
T ss_dssp EEECTTSC
T ss_pred EEECCCCC
Confidence 66666654
No 38
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.90 E-value=5e-23 Score=222.49 Aligned_cols=269 Identities=19% Similarity=0.102 Sum_probs=218.1
Q ss_pred CCcccEEEeecCccccccccchhHHhcCCCcccEEEecCCcCcccCccCCCCCCcCeEeccCCCCccchhhhcccccccE
Q 037018 343 DMYLQSFLNHTLESDRLALIDCENFCKKFKHLRVLNLGSAILYQYPPGLENLFHLKYLKLNIPSLNCLPSLLCTLLNLQT 422 (663)
Q Consensus 343 ~~~lr~L~l~~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~ 422 (663)
+++++.|.+.++.... ++.+ ..+++|++|++++|.++.+| ++.+++|++|++++|.++.+| ++.+++|++
T Consensus 41 l~~L~~L~Ls~n~l~~-----~~~l-~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~ 110 (457)
T 3bz5_A 41 LATLTSLDCHNSSITD-----MTGI-EKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD--VTPLTKLTY 110 (457)
T ss_dssp HTTCCEEECCSSCCCC-----CTTG-GGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCCE
T ss_pred cCCCCEEEccCCCccc-----Chhh-cccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee--cCCCCcCCE
Confidence 7899999999987753 3555 89999999999999998875 889999999999999999886 889999999
Q ss_pred eeccCCcccccchhhhcCcCCcEEEccCCCCCCCCCCCcCCCCCCcEeeCcCCC--CCChhhcCCCCCccEEEeecCCCc
Q 037018 423 LEMPASYIDHSPEGIWMMQKLMHLNFGSINLPAPPKNYSSSLKNLIFISSLNPS--SCTPDILGRLPNVQTLRISGDLSH 500 (663)
Q Consensus 423 L~L~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~--~~~~~~l~~l~~L~~L~l~~~~~~ 500 (663)
|++++|.+..+| ++.+++|++|++++|.+.. ++ ++.+++|+.|++.++. ..+ .++.+++|+.|++++|.
T Consensus 111 L~L~~N~l~~l~--~~~l~~L~~L~l~~N~l~~-l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~-- 181 (457)
T 3bz5_A 111 LNCDTNKLTKLD--VSQNPLLTYLNCARNTLTE-ID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNK-- 181 (457)
T ss_dssp EECCSSCCSCCC--CTTCTTCCEEECTTSCCSC-CC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSC--
T ss_pred EECCCCcCCeec--CCCCCcCCEEECCCCccce-ec--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCc--
Confidence 999999888886 8899999999999554443 43 8899999999999996 333 58899999999999983
Q ss_pred cccchhhhhcCCCCCCEEEEeecCccccccccccccccCCCCceEEEEecccCCCCChhhhcCCCCCcEEEeecCCCCCc
Q 037018 501 YHSGVSKSLCELHKLECLQLVHEGRMWQLSRMVLSEYQFPPCLTQLSLSNTQLMEDPMPALEKLPHLEVLKLKQNSYSER 580 (663)
Q Consensus 501 ~~~~~~~~l~~l~~L~~L~l~~~~~l~~lp~~~~~l~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~ 580 (663)
.. .++ +..+++|+.|++++ +.++.++ +.. +++|+.|++++|.+++. + ++.+++|+.|++++|.+.+.
T Consensus 182 l~-~l~--l~~l~~L~~L~l~~-N~l~~~~-----l~~-l~~L~~L~Ls~N~l~~i-p--~~~l~~L~~L~l~~N~l~~~ 248 (457)
T 3bz5_A 182 IT-ELD--VSQNKLLNRLNCDT-NNITKLD-----LNQ-NIQLTFLDCSSNKLTEI-D--VTPLTQLTYFDCSVNPLTEL 248 (457)
T ss_dssp CC-CCC--CTTCTTCCEEECCS-SCCSCCC-----CTT-CTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC
T ss_pred cc-eec--cccCCCCCEEECcC-CcCCeec-----ccc-CCCCCEEECcCCccccc-C--ccccCCCCEEEeeCCcCCCc
Confidence 33 344 77889999999997 7777763 456 89999999999998763 2 88999999999999998875
Q ss_pred eeeecCCCCCCccc----------EEEccCCCCccccccccccccccceEEeecCCCCCCCcc--------ccCCCCCCC
Q 037018 581 KLACVGSGSFPQLK----------ILHLKSMLWLEEWTMGAGAMPKLESLIVNPCAYLRKLPE--------ELWCIKSLC 642 (663)
Q Consensus 581 ~~~~~~~~~~~~L~----------~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~--------~l~~l~sL~ 642 (663)
. .+.+++|+ .|++++|..+..+| .+.+++|+.|++++|+.++.+|. .+.++++|+
T Consensus 249 ~-----~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~ 321 (457)
T 3bz5_A 249 D-----VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLV 321 (457)
T ss_dssp C-----CTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCC
T ss_pred C-----HHHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceEechhhcccCC
Confidence 4 34555555 45555555555555 46789999999999987766553 245667888
Q ss_pred EEEecCCC
Q 037018 643 KLELHWPQ 650 (663)
Q Consensus 643 ~L~l~~c~ 650 (663)
.|++++|.
T Consensus 322 ~L~L~~N~ 329 (457)
T 3bz5_A 322 YLYLNNTE 329 (457)
T ss_dssp EEECTTCC
T ss_pred EEECCCCc
Confidence 88887765
No 39
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.90 E-value=2.9e-24 Score=220.77 Aligned_cols=247 Identities=19% Similarity=0.190 Sum_probs=144.2
Q ss_pred CcccEEEecCCcCc---ccCccCCCCCCcCeEeccC-CCCc-cchhhhcccccccEeeccCCccc-ccchhhhcCcCCcE
Q 037018 372 KHLRVLNLGSAILY---QYPPGLENLFHLKYLKLNI-PSLN-CLPSLLCTLLNLQTLEMPASYID-HSPEGIWMMQKLMH 445 (663)
Q Consensus 372 ~~Lr~L~L~~~~l~---~lp~~~~~l~~L~~L~L~~-~~i~-~lp~~i~~L~~L~~L~L~~~~l~-~lp~~l~~l~~L~~ 445 (663)
.+++.|+++++.+. .+|..++++++|++|++++ |.+. .+|..++++++|++|++++|.+. .+|..+..+++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 45666666666655 3555666666666666663 5554 55666666666666666666554 55555666666666
Q ss_pred EEccCCCCCCCCCCCcCCCCCCcEeeCcCCC--CCChhhcCCCC-CccEEEeecCCCccccchhhhhcCCCCCCEEEEee
Q 037018 446 LNFGSINLPAPPKNYSSSLKNLIFISSLNPS--SCTPDILGRLP-NVQTLRISGDLSHYHSGVSKSLCELHKLECLQLVH 522 (663)
Q Consensus 446 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~--~~~~~~l~~l~-~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~ 522 (663)
|++++|.+...+|..+..+++|++|++.++. +.++..++.++ +|+.|++++| ......+..+..++ |+.|++++
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N--~l~~~~~~~~~~l~-L~~L~Ls~ 206 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRN--RLTGKIPPTFANLN-LAFVDLSR 206 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSS--EEEEECCGGGGGCC-CSEEECCS
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCC--eeeccCChHHhCCc-ccEEECcC
Confidence 6666444444555555566666666665555 34555555555 6666666666 34445555555554 66666665
Q ss_pred cCccc-cccccccccccCCCCceEEEEecccCCCCChhhhcCCCCCcEEEeecCCCCCceeeecCCCCCCcccEEEccCC
Q 037018 523 EGRMW-QLSRMVLSEYQFPPCLTQLSLSNTQLMEDPMPALEKLPHLEVLKLKQNSYSERKLACVGSGSFPQLKILHLKSM 601 (663)
Q Consensus 523 ~~~l~-~lp~~~~~l~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~ 601 (663)
+.+. ..|. .+.. +++|+.|++++|.+....+ .+..+++|++|++++|.+.+..+.. +..+++|+.|+|++|
T Consensus 207 -N~l~~~~~~---~~~~-l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~--l~~l~~L~~L~Ls~N 278 (313)
T 1ogq_A 207 -NMLEGDASV---LFGS-DKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQG--LTQLKFLHSLNVSFN 278 (313)
T ss_dssp -SEEEECCGG---GCCT-TSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGG--GGGCTTCCEEECCSS
T ss_pred -CcccCcCCH---HHhc-CCCCCEEECCCCceeeecC-cccccCCCCEEECcCCcccCcCChH--HhcCcCCCEEECcCC
Confidence 4444 3444 4555 6666666666666543332 3556666666666666665444333 456666666666665
Q ss_pred CCccccccccccccccceEEeecCCCCCC
Q 037018 602 LWLEEWTMGAGAMPKLESLIVNPCAYLRK 630 (663)
Q Consensus 602 ~~l~~l~~~~~~l~~L~~L~l~~c~~l~~ 630 (663)
.....+|.. ..+++|+.|++.+|+.+..
T Consensus 279 ~l~~~ip~~-~~l~~L~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 279 NLCGEIPQG-GNLQRFDVSAYANNKCLCG 306 (313)
T ss_dssp EEEEECCCS-TTGGGSCGGGTCSSSEEES
T ss_pred cccccCCCC-ccccccChHHhcCCCCccC
Confidence 433355543 6667777777777665443
No 40
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.90 E-value=3.6e-24 Score=220.11 Aligned_cols=244 Identities=17% Similarity=0.189 Sum_probs=216.4
Q ss_pred CCcCeEeccCCCCc---cchhhhcccccccEeeccC-Ccc-cccchhhhcCcCCcEEEccCCCCCCCCCCCcCCCCCCcE
Q 037018 395 FHLKYLKLNIPSLN---CLPSLLCTLLNLQTLEMPA-SYI-DHSPEGIWMMQKLMHLNFGSINLPAPPKNYSSSLKNLIF 469 (663)
Q Consensus 395 ~~L~~L~L~~~~i~---~lp~~i~~L~~L~~L~L~~-~~l-~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 469 (663)
.+++.|+++++.+. .+|..++++++|++|++++ +.+ +.+|..+.++++|++|++++|.+...+|..+..+++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 58999999999998 5899999999999999995 654 578999999999999999966666788999999999999
Q ss_pred eeCcCCC--CCChhhcCCCCCccEEEeecCCCccccchhhhhcCCC-CCCEEEEeecCccc-cccccccccccCCCCceE
Q 037018 470 ISSLNPS--SCTPDILGRLPNVQTLRISGDLSHYHSGVSKSLCELH-KLECLQLVHEGRMW-QLSRMVLSEYQFPPCLTQ 545 (663)
Q Consensus 470 L~l~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~l~-~lp~~~~~l~~~l~~L~~ 545 (663)
|+++++. ...+..++.+++|+.|++++| ......|..+..++ +|+.|++++ +.+. .+|. .+.. ++ |+.
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N--~l~~~~p~~l~~l~~~L~~L~L~~-N~l~~~~~~---~~~~-l~-L~~ 201 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGN--RISGAIPDSYGSFSKLFTSMTISR-NRLTGKIPP---TFAN-LN-LAF 201 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSS--CCEEECCGGGGCCCTTCCEEECCS-SEEEEECCG---GGGG-CC-CSE
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCC--cccCcCCHHHhhhhhcCcEEECcC-CeeeccCCh---HHhC-Cc-ccE
Confidence 9999998 578889999999999999999 56668888899998 999999997 6676 7787 7887 76 999
Q ss_pred EEEecccCCCCChhhhcCCCCCcEEEeecCCCCCceeeecCCCCCCcccEEEccCCCCccccccccccccccceEEeecC
Q 037018 546 LSLSNTQLMEDPMPALEKLPHLEVLKLKQNSYSERKLACVGSGSFPQLKILHLKSMLWLEEWTMGAGAMPKLESLIVNPC 625 (663)
Q Consensus 546 L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~c 625 (663)
|++++|.+....+..+..+++|+.|++++|.+.+..+. +..+++|++|++++|.....+|..+..+++|+.|++++|
T Consensus 202 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~---~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N 278 (313)
T 1ogq_A 202 VDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK---VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFN 278 (313)
T ss_dssp EECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG---CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSS
T ss_pred EECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc---ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCC
Confidence 99999998888888999999999999999998865544 467899999999997655588999999999999999999
Q ss_pred CCCCCCccccCCCCCCCEEEecCCC
Q 037018 626 AYLRKLPEELWCIKSLCKLELHWPQ 650 (663)
Q Consensus 626 ~~l~~l~~~l~~l~sL~~L~l~~c~ 650 (663)
+....+|.. ..+++|+.|+++++|
T Consensus 279 ~l~~~ip~~-~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 279 NLCGEIPQG-GNLQRFDVSAYANNK 302 (313)
T ss_dssp EEEEECCCS-TTGGGSCGGGTCSSS
T ss_pred cccccCCCC-ccccccChHHhcCCC
Confidence 987788875 789999999999987
No 41
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.90 E-value=6.1e-23 Score=234.30 Aligned_cols=321 Identities=16% Similarity=0.110 Sum_probs=191.1
Q ss_pred CCceeEEEEEecccccccccccC-CCcccEEEeecCccccccccch-hHHhcCCCcccEEEecCCcCcccC-ccCCCCCC
Q 037018 320 LANVKRCFILEDLIDEFISLEHS-DMYLQSFLNHTLESDRLALIDC-ENFCKKFKHLRVLNLGSAILYQYP-PGLENLFH 396 (663)
Q Consensus 320 ~~~~r~lsi~~~~~~~~~~~~~~-~~~lr~L~l~~~~~~~~~~~~l-~~~~~~l~~Lr~L~L~~~~l~~lp-~~~~~l~~ 396 (663)
..+++++.+..+.+....+.... +++++.|.+.++... .+ +..+..+++|++|++++|.+..++ ..++++++
T Consensus 48 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-----~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 122 (680)
T 1ziw_A 48 YSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS-----QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKN 122 (680)
T ss_dssp GTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCC-----CCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTT
T ss_pred CCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccC-----ccChhhhccCCCCCEEECCCCccCccChhHccccCC
Confidence 46789999998876665432222 899999999998765 34 333489999999999999998766 56999999
Q ss_pred cCeEeccCCCCccc-hhhhcccccccEeeccCCcccccchh-h--hcCcCCcEEEccCCCCCCCCCCCcCCC--------
Q 037018 397 LKYLKLNIPSLNCL-PSLLCTLLNLQTLEMPASYIDHSPEG-I--WMMQKLMHLNFGSINLPAPPKNYSSSL-------- 464 (663)
Q Consensus 397 L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~l~~lp~~-l--~~l~~L~~L~l~~~~~~~~~~~~l~~l-------- 464 (663)
|++|++++|.+... |..++++++|++|++++|.+..++.. + ..+++|++|++++|.+....|..+..+
T Consensus 123 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 202 (680)
T 1ziw_A 123 LITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFL 202 (680)
T ss_dssp CCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEEC
T ss_pred CCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhc
Confidence 99999999998855 56788999999999999988777654 3 356899999999655544444433322
Q ss_pred -------------------CC--------------------------CcEeeCcCCC--CCChhhcCCCCCccEEEeecC
Q 037018 465 -------------------KN--------------------------LIFISSLNPS--SCTPDILGRLPNVQTLRISGD 497 (663)
Q Consensus 465 -------------------~~--------------------------L~~L~l~~~~--~~~~~~l~~l~~L~~L~l~~~ 497 (663)
++ |+.|+++++. ...+..++.+++|+.|++++|
T Consensus 203 ~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 282 (680)
T 1ziw_A 203 NNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYN 282 (680)
T ss_dssp TTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred cccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCC
Confidence 22 4444444443 112234455555555555555
Q ss_pred CCccccchhhhhcCCCCCCEEEEeecCccc------ccccc-ccccccCCCCceEEEEecccCCCCChhhhcCCCCCcEE
Q 037018 498 LSHYHSGVSKSLCELHKLECLQLVHEGRMW------QLSRM-VLSEYQFPPCLTQLSLSNTQLMEDPMPALEKLPHLEVL 570 (663)
Q Consensus 498 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~------~lp~~-~~~l~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L 570 (663)
......+..+..+++|+.|++++ +... .+|.. -..+.. +++|+.|++++|.+....+..+.++++|+.|
T Consensus 283 --~l~~~~~~~~~~l~~L~~L~L~~-~~~~~~~~~~~lp~i~~~~~~~-l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 358 (680)
T 1ziw_A 283 --NIQHLFSHSLHGLFNVRYLNLKR-SFTKQSISLASLPKIDDFSFQW-LKCLEHLNMEDNDIPGIKSNMFTGLINLKYL 358 (680)
T ss_dssp --CBSEECTTTTTTCTTCCEEECTT-CBCCC------CCEECTTTTTT-CTTCCEEECCSCCBCCCCTTTTTTCTTCCEE
T ss_pred --ccCccChhhhcCCCCccEEeccc-hhhhcccccccccccChhhccc-CCCCCEEECCCCccCCCChhHhccccCCcEE
Confidence 23333444455555555555543 1111 12210 002334 6677777777777666666667777777777
Q ss_pred EeecCCCCCceeeecCCC--CCCcccEEEccCCCCccccccccccccccceEEeecCCCCCCCc-cccCCCCCCCEEEec
Q 037018 571 KLKQNSYSERKLACVGSG--SFPQLKILHLKSMLWLEEWTMGAGAMPKLESLIVNPCAYLRKLP-EELWCIKSLCKLELH 647 (663)
Q Consensus 571 ~L~~~~~~~~~~~~~~~~--~~~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~-~~l~~l~sL~~L~l~ 647 (663)
++++|.+.........+. ..++|+.|++++|......|..+..+++|+.|++++|.....+| ..+.++++|+.|+++
T Consensus 359 ~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls 438 (680)
T 1ziw_A 359 SLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLS 438 (680)
T ss_dssp ECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECC
T ss_pred ECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecC
Confidence 777665432221110000 11244444444432222223344455555555555554433333 234444444444444
Q ss_pred CC
Q 037018 648 WP 649 (663)
Q Consensus 648 ~c 649 (663)
+|
T Consensus 439 ~n 440 (680)
T 1ziw_A 439 YN 440 (680)
T ss_dssp SC
T ss_pred CC
Confidence 44
No 42
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.90 E-value=5.3e-23 Score=213.40 Aligned_cols=283 Identities=18% Similarity=0.186 Sum_probs=201.9
Q ss_pred cccEEEeecCccccccccchhHHhcCCCcccEEEecCCcCcccC-ccCCCCCCcCeEeccCCCCccc-hhhhcccccccE
Q 037018 345 YLQSFLNHTLESDRLALIDCENFCKKFKHLRVLNLGSAILYQYP-PGLENLFHLKYLKLNIPSLNCL-PSLLCTLLNLQT 422 (663)
Q Consensus 345 ~lr~L~l~~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~l~~lp-~~~~~l~~L~~L~L~~~~i~~l-p~~i~~L~~L~~ 422 (663)
+++.+.+.++... .++. .-.++|++|++++|.++.++ ..+..+++|++|++++|.++.+ |..++++++|++
T Consensus 34 ~l~~l~~~~~~l~-----~ip~--~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 106 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-----AVPK--EISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQK 106 (332)
T ss_dssp ETTEEECCSSCCS-----SCCS--CCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCE
T ss_pred cCCEEECCCCCcc-----ccCC--CCCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCE
Confidence 5677777666543 2222 12367888888888887554 4688888888888888888866 677888888888
Q ss_pred eeccCCcccccchhhhcCcCCcEEEccCCCCCCCCCCCcCCCCCCcEeeCcCCC-C---CChhhcCCCCCccEEEeecCC
Q 037018 423 LEMPASYIDHSPEGIWMMQKLMHLNFGSINLPAPPKNYSSSLKNLIFISSLNPS-S---CTPDILGRLPNVQTLRISGDL 498 (663)
Q Consensus 423 L~L~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~---~~~~~l~~l~~L~~L~l~~~~ 498 (663)
|++++|.+..+|..+. ++|++|++++|.+....+..+..+++|+.|++.++. . ..+..++.+ +|+.|++++|
T Consensus 107 L~L~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n- 182 (332)
T 2ft3_A 107 LYISKNHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEA- 182 (332)
T ss_dssp EECCSSCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSS-
T ss_pred EECCCCcCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCC-
Confidence 8888888888877654 788888888444443334457888888888888876 2 445566666 8888888887
Q ss_pred CccccchhhhhcCCCCCCEEEEeecCccccccccccccccCCCCceEEEEecccCCCCChhhhcCCCCCcEEEeecCCCC
Q 037018 499 SHYHSGVSKSLCELHKLECLQLVHEGRMWQLSRMVLSEYQFPPCLTQLSLSNTQLMEDPMPALEKLPHLEVLKLKQNSYS 578 (663)
Q Consensus 499 ~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~lp~~~~~l~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~ 578 (663)
....++..+. ++|++|++++ +.+..++.. .+.. +++|+.|++++|.+....+..+..+++|+.|++++|.+.
T Consensus 183 --~l~~l~~~~~--~~L~~L~l~~-n~i~~~~~~--~l~~-l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 254 (332)
T 2ft3_A 183 --KLTGIPKDLP--ETLNELHLDH-NKIQAIELE--DLLR-YSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS 254 (332)
T ss_dssp --BCSSCCSSSC--SSCSCCBCCS-SCCCCCCTT--SSTT-CTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC
T ss_pred --CCCccCcccc--CCCCEEECCC-CcCCccCHH--HhcC-CCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe
Confidence 2333454433 6888888886 777766521 5667 888999999998887777777888899999999988877
Q ss_pred CceeeecCCCCCCcccEEEccCCCCccccccc-cc------cccccceEEeecCCCC--CCCccccCCCCCCCEEEecCC
Q 037018 579 ERKLACVGSGSFPQLKILHLKSMLWLEEWTMG-AG------AMPKLESLIVNPCAYL--RKLPEELWCIKSLCKLELHWP 649 (663)
Q Consensus 579 ~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~-~~------~l~~L~~L~l~~c~~l--~~l~~~l~~l~sL~~L~l~~c 649 (663)
... . . +..+++|+.|++++| .+..++.. +. ..++|+.|++++|+.. ...|..+..+++|+.|++++|
T Consensus 255 ~lp-~-~-l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 255 RVP-A-G-LPDLKLLQVVYLHTN-NITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330 (332)
T ss_dssp BCC-T-T-GGGCTTCCEEECCSS-CCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC---
T ss_pred ecC-h-h-hhcCccCCEEECCCC-CCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhcccc
Confidence 322 2 2 567888999999985 46655432 22 2577899999999865 345667788899999999887
Q ss_pred C
Q 037018 650 Q 650 (663)
Q Consensus 650 ~ 650 (663)
.
T Consensus 331 ~ 331 (332)
T 2ft3_A 331 K 331 (332)
T ss_dssp -
T ss_pred c
Confidence 5
No 43
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.90 E-value=6.7e-23 Score=212.47 Aligned_cols=264 Identities=18% Similarity=0.177 Sum_probs=169.1
Q ss_pred cccEEEecCCcCcccCccCCCCCCcCeEeccCCCCccchh-hhcccccccEeeccCCccccc-chhhhcCcCCcEEEccC
Q 037018 373 HLRVLNLGSAILYQYPPGLENLFHLKYLKLNIPSLNCLPS-LLCTLLNLQTLEMPASYIDHS-PEGIWMMQKLMHLNFGS 450 (663)
Q Consensus 373 ~Lr~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~l~~l-p~~l~~l~~L~~L~l~~ 450 (663)
++++++++++.++.+|..+. ++|++|++++|.++.++. .++++++|++|++++|.+..+ |..+..+++|++|+++
T Consensus 32 ~l~~l~~~~~~l~~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls- 108 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS- 108 (330)
T ss_dssp ETTEEECTTSCCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC-
T ss_pred CCeEEEecCCCccccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC-
Confidence 56777777777776665543 567777777777776654 567777777777777766655 5567777777777777
Q ss_pred CCCCCCCCCCcCCCCCCcEeeCcCCC--CCChhhcCCCCCccEEEeecCCCccccchhhhhcCCCCCCEEEEeecCcccc
Q 037018 451 INLPAPPKNYSSSLKNLIFISSLNPS--SCTPDILGRLPNVQTLRISGDLSHYHSGVSKSLCELHKLECLQLVHEGRMWQ 528 (663)
Q Consensus 451 ~~~~~~~~~~l~~l~~L~~L~l~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~ 528 (663)
++....+|..+. ++|++|++.++. ...+..++.+++|+.|++++|........+..+..+++|+.|++++ +.++.
T Consensus 109 ~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~-n~l~~ 185 (330)
T 1xku_A 109 KNQLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIAD-TNITT 185 (330)
T ss_dssp SSCCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCS-SCCCS
T ss_pred CCcCCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCC-Ccccc
Confidence 333445555443 577777777766 3333456777777777777763111224455666677777777775 66666
Q ss_pred ccccccccccCCCCceEEEEecccCCCCChhhhcCCCCCcEEEeecCCCCCceeeecCCCCCCcccEEEccCCCCccccc
Q 037018 529 LSRMVLSEYQFPPCLTQLSLSNTQLMEDPMPALEKLPHLEVLKLKQNSYSERKLACVGSGSFPQLKILHLKSMLWLEEWT 608 (663)
Q Consensus 529 lp~~~~~l~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~ 608 (663)
+|. .+ .++|+.|++++|.+....+..+..+++|+.|++++|.+.+..... +..+++|+.|++++| .+..+|
T Consensus 186 l~~---~~---~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~--~~~l~~L~~L~L~~N-~l~~lp 256 (330)
T 1xku_A 186 IPQ---GL---PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGS--LANTPHLRELHLNNN-KLVKVP 256 (330)
T ss_dssp CCS---SC---CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTT--GGGSTTCCEEECCSS-CCSSCC
T ss_pred CCc---cc---cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhh--ccCCCCCCEEECCCC-cCccCC
Confidence 665 22 357777777777766655666777777777777777665543322 456677777777774 566777
Q ss_pred cccccccccceEEeecCCCCCCCccccC------CCCCCCEEEecCCCH
Q 037018 609 MGAGAMPKLESLIVNPCAYLRKLPEELW------CIKSLCKLELHWPQP 651 (663)
Q Consensus 609 ~~~~~l~~L~~L~l~~c~~l~~l~~~l~------~l~sL~~L~l~~c~~ 651 (663)
..+..+++|+.|++++|+....-+..+. ..++|+.|+++++|.
T Consensus 257 ~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~ 305 (330)
T 1xku_A 257 GGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPV 305 (330)
T ss_dssp TTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSS
T ss_pred hhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcc
Confidence 6677777777777777764332222222 236677777777764
No 44
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.90 E-value=8.2e-23 Score=211.97 Aligned_cols=264 Identities=17% Similarity=0.171 Sum_probs=219.2
Q ss_pred cccEEEecCCcCcccCccCCCCCCcCeEeccCCCCccch-hhhcccccccEeeccCCccccc-chhhhcCcCCcEEEccC
Q 037018 373 HLRVLNLGSAILYQYPPGLENLFHLKYLKLNIPSLNCLP-SLLCTLLNLQTLEMPASYIDHS-PEGIWMMQKLMHLNFGS 450 (663)
Q Consensus 373 ~Lr~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~l~~l-p~~l~~l~~L~~L~l~~ 450 (663)
++++++++++.++.+|..+. ++|++|++++|.+..++ ..++++++|++|++++|.+..+ |..+..+++|++|+++
T Consensus 34 ~l~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~- 110 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS- 110 (332)
T ss_dssp ETTEEECCSSCCSSCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC-
T ss_pred cCCEEECCCCCccccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC-
Confidence 68999999999999998764 69999999999999875 5899999999999999988777 6779999999999999
Q ss_pred CCCCCCCCCCcCCCCCCcEeeCcCCC-CCCh-hhcCCCCCccEEEeecCCCccccchhhhhcCCCCCCEEEEeecCcccc
Q 037018 451 INLPAPPKNYSSSLKNLIFISSLNPS-SCTP-DILGRLPNVQTLRISGDLSHYHSGVSKSLCELHKLECLQLVHEGRMWQ 528 (663)
Q Consensus 451 ~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~ 528 (663)
++....+|..+. ++|++|++.++. ..++ ..++.+++|+.|++++|........+..+..+ +|+.|++++ +.++.
T Consensus 111 ~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~-n~l~~ 186 (332)
T 2ft3_A 111 KNHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISE-AKLTG 186 (332)
T ss_dssp SSCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCS-SBCSS
T ss_pred CCcCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcC-CCCCc
Confidence 555557777665 899999999998 4444 46899999999999998421123456667777 999999997 88888
Q ss_pred ccccccccccCCCCceEEEEecccCCCCChhhhcCCCCCcEEEeecCCCCCceeeecCCCCCCcccEEEccCCCCccccc
Q 037018 529 LSRMVLSEYQFPPCLTQLSLSNTQLMEDPMPALEKLPHLEVLKLKQNSYSERKLACVGSGSFPQLKILHLKSMLWLEEWT 608 (663)
Q Consensus 529 lp~~~~~l~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~ 608 (663)
+|. .+ .++|+.|++++|.+....+..+..+++|+.|++++|.+.+..... +..+++|+.|++++| .+..+|
T Consensus 187 l~~---~~---~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~--~~~l~~L~~L~L~~N-~l~~lp 257 (332)
T 2ft3_A 187 IPK---DL---PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGS--LSFLPTLRELHLDNN-KLSRVP 257 (332)
T ss_dssp CCS---SS---CSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTG--GGGCTTCCEEECCSS-CCCBCC
T ss_pred cCc---cc---cCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhH--hhCCCCCCEEECCCC-cCeecC
Confidence 986 33 479999999999998888788999999999999999988755433 578999999999996 678999
Q ss_pred cccccccccceEEeecCCCCCCCccccCC------CCCCCEEEecCCCHH
Q 037018 609 MGAGAMPKLESLIVNPCAYLRKLPEELWC------IKSLCKLELHWPQPE 652 (663)
Q Consensus 609 ~~~~~l~~L~~L~l~~c~~l~~l~~~l~~------l~sL~~L~l~~c~~~ 652 (663)
..+..+++|+.|++++|+....-+..+.. .++|+.|+++++|..
T Consensus 258 ~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~ 307 (332)
T 2ft3_A 258 AGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVP 307 (332)
T ss_dssp TTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSC
T ss_pred hhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCccc
Confidence 99999999999999999855433333333 478999999999844
No 45
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.90 E-value=6.8e-23 Score=227.82 Aligned_cols=314 Identities=17% Similarity=0.103 Sum_probs=178.1
Q ss_pred CCceeEEEEEecccccccccccC-CCcccEEEeecCccccccccchhHHhcCCCcccEEEecCCcCc--ccCccCCCCCC
Q 037018 320 LANVKRCFILEDLIDEFISLEHS-DMYLQSFLNHTLESDRLALIDCENFCKKFKHLRVLNLGSAILY--QYPPGLENLFH 396 (663)
Q Consensus 320 ~~~~r~lsi~~~~~~~~~~~~~~-~~~lr~L~l~~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~l~--~lp~~~~~l~~ 396 (663)
..+++++.+..+.+...++.... .++++.|.+.++.... ..+..+..+++|++|++++|.++ ..|..++++++
T Consensus 49 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~ 124 (549)
T 2z81_A 49 CANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSS----LSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTN 124 (549)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCS----CCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTT
T ss_pred CCcccEEECCCCCcCccChhhccccccCCEEECCCCccCc----cCHHHhccCCCCcEEECCCCcccccchhhhhhccCC
Confidence 45677777777766555432222 6777777777776542 12443377777777777777766 34556777777
Q ss_pred cCeEeccCCC-Cccch-hhhcccccccEeeccCCcccc-cchhh------------------------hcCcCCcEEEcc
Q 037018 397 LKYLKLNIPS-LNCLP-SLLCTLLNLQTLEMPASYIDH-SPEGI------------------------WMMQKLMHLNFG 449 (663)
Q Consensus 397 L~~L~L~~~~-i~~lp-~~i~~L~~L~~L~L~~~~l~~-lp~~l------------------------~~l~~L~~L~l~ 449 (663)
|++|++++|. +..+| ..++++++|++|++++|.+.. .|..+ ..+++|++|+++
T Consensus 125 L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~ 204 (549)
T 2z81_A 125 LQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELR 204 (549)
T ss_dssp CCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEE
T ss_pred ccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEcc
Confidence 7777777765 45554 456666666666666664432 23222 346677777776
Q ss_pred CCCCCCCC--CCC-----------------------------------------------------------cCCC----
Q 037018 450 SINLPAPP--KNY-----------------------------------------------------------SSSL---- 464 (663)
Q Consensus 450 ~~~~~~~~--~~~-----------------------------------------------------------l~~l---- 464 (663)
+|.+.... |.. +..+
T Consensus 205 ~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~ 284 (549)
T 2z81_A 205 DTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVE 284 (549)
T ss_dssp SCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCC
T ss_pred CCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccc
Confidence 44332210 000 0000
Q ss_pred -------------------------CCCcEeeCcCCC-CCChhhc-CCCCCccEEEeecCCCccccchh---hhhcCCCC
Q 037018 465 -------------------------KNLIFISSLNPS-SCTPDIL-GRLPNVQTLRISGDLSHYHSGVS---KSLCELHK 514 (663)
Q Consensus 465 -------------------------~~L~~L~l~~~~-~~~~~~l-~~l~~L~~L~l~~~~~~~~~~~~---~~l~~l~~ 514 (663)
.+|+.|++.++. ..++..+ +.+++|+.|++++| ...+..+ ..+..+++
T Consensus 285 ~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N--~l~~~~~~~~~~~~~l~~ 362 (549)
T 2z81_A 285 TVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSEN--LMVEEYLKNSACKGAWPS 362 (549)
T ss_dssp EEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSS--CCCHHHHHHHTCTTSSTT
T ss_pred cccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEccCC--ccccccccchhhhhcccc
Confidence 112222222222 2222222 24556666666665 2333222 12344555
Q ss_pred CCEEEEeecCccccccccccccccCCCCceEEEEecccCCCCChhhhcCCCCC---------------------cEEEee
Q 037018 515 LECLQLVHEGRMWQLSRMVLSEYQFPPCLTQLSLSNTQLMEDPMPALEKLPHL---------------------EVLKLK 573 (663)
Q Consensus 515 L~~L~l~~~~~l~~lp~~~~~l~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L---------------------~~L~L~ 573 (663)
|+.|++++ +.++.+|..-..+.. +++|+.|++++|.++ ..+..+..+++| +.|+++
T Consensus 363 L~~L~Ls~-N~l~~~~~~~~~~~~-l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~l~~~~~~~L~~L~Ls 439 (549)
T 2z81_A 363 LQTLVLSQ-NHLRSMQKTGEILLT-LKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVS 439 (549)
T ss_dssp CCEEECTT-SCCCCHHHHHHHGGG-CTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSCCCTTSCTTCSEEECC
T ss_pred CcEEEccC-Ccccccccchhhhhc-CCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCcccccchhcCCceEEECC
Confidence 55555554 444443210002344 555555555555543 233334444444 445554
Q ss_pred cCCCCCceeeecCCCCCCcccEEEccCCCCccccccccccccccceEEeecCCCCCCCccccCCCCCCCEEEecCCC
Q 037018 574 QNSYSERKLACVGSGSFPQLKILHLKSMLWLEEWTMGAGAMPKLESLIVNPCAYLRKLPEELWCIKSLCKLELHWPQ 650 (663)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~l~~l~sL~~L~l~~c~ 650 (663)
+|.+++. ...+++|+.|+|++| .+..+|. ...+++|+.|++++|......|..+..+++|+.|++++||
T Consensus 440 ~N~l~~~------~~~l~~L~~L~Ls~N-~l~~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~ 508 (549)
T 2z81_A 440 NNNLDSF------SLFLPRLQELYISRN-KLKTLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNP 508 (549)
T ss_dssp SSCCSCC------CCCCTTCCEEECCSS-CCSSCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSC
T ss_pred CCChhhh------cccCChhcEEECCCC-ccCcCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCC
Confidence 4444331 246889999999996 6778886 4679999999999998766566678899999999999977
No 46
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.90 E-value=6e-23 Score=230.23 Aligned_cols=262 Identities=16% Similarity=0.133 Sum_probs=212.9
Q ss_pred CCCcccEEEecCCcCcccCcc-CCCCCCcCeEeccCCCCccch-hhhcccccccEeeccCCcccccchh-hhcCcCCcEE
Q 037018 370 KFKHLRVLNLGSAILYQYPPG-LENLFHLKYLKLNIPSLNCLP-SLLCTLLNLQTLEMPASYIDHSPEG-IWMMQKLMHL 446 (663)
Q Consensus 370 ~l~~Lr~L~L~~~~l~~lp~~-~~~l~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~l~~lp~~-l~~l~~L~~L 446 (663)
.++++++|+++++.+..+|.. +..+++|++|++++|.+..+| ..++.+++|++|++++|.+..+|.. ++.+++|++|
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 568999999999999988865 678999999999999999776 4899999999999999988887654 7899999999
Q ss_pred EccCCCCCCCCCCC-cCCCCCCcEeeCcCCC--CCChhhcCCCCCccEEEeecCCCccccchhhhhcCCCCCC-------
Q 037018 447 NFGSINLPAPPKNY-SSSLKNLIFISSLNPS--SCTPDILGRLPNVQTLRISGDLSHYHSGVSKSLCELHKLE------- 516 (663)
Q Consensus 447 ~l~~~~~~~~~~~~-l~~l~~L~~L~l~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~------- 516 (663)
++++| ....+|.. ++.+++|+.|++++|. ...+..++.+++|+.|++++|. .... + +..+++|+
T Consensus 129 ~L~~n-~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~--l~~~-~--~~~l~~L~~L~l~~n 202 (597)
T 3oja_B 129 VLERN-DLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR--LTHV-D--LSLIPSLFHANVSYN 202 (597)
T ss_dssp ECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSC--CSBC-C--GGGCTTCSEEECCSS
T ss_pred EeeCC-CCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCC--CCCc-C--hhhhhhhhhhhcccC
Confidence 99954 44455554 6899999999999998 4455679999999999999984 3222 1 23344444
Q ss_pred ------------EEEEeecCccccccccccccccCCCCceEEEEecccCCCCChhhhcCCCCCcEEEeecCCCCCceeee
Q 037018 517 ------------CLQLVHEGRMWQLSRMVLSEYQFPPCLTQLSLSNTQLMEDPMPALEKLPHLEVLKLKQNSYSERKLAC 584 (663)
Q Consensus 517 ------------~L~l~~~~~l~~lp~~~~~l~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~ 584 (663)
.|++++ +.+..+|. . . .++|+.|++++|.+++ +..+..+++|+.|+|++|.+.+..+..
T Consensus 203 ~l~~l~~~~~L~~L~ls~-n~l~~~~~---~--~-~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~ 273 (597)
T 3oja_B 203 LLSTLAIPIAVEELDASH-NSINVVRG---P--V-NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHP 273 (597)
T ss_dssp CCSEEECCTTCSEEECCS-SCCCEEEC---S--C-CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGG
T ss_pred ccccccCCchhheeeccC-Cccccccc---c--c-CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHH
Confidence 455543 44444443 1 1 4679999999998765 468899999999999999988765544
Q ss_pred cCCCCCCcccEEEccCCCCccccccccccccccceEEeecCCCCCCCccccCCCCCCCEEEecCCC
Q 037018 585 VGSGSFPQLKILHLKSMLWLEEWTMGAGAMPKLESLIVNPCAYLRKLPEELWCIKSLCKLELHWPQ 650 (663)
Q Consensus 585 ~~~~~~~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~l~~l~sL~~L~l~~c~ 650 (663)
+..+++|+.|+|++| .+..+|.....+|+|+.|++++|... .+|..+..+++|+.|++++|+
T Consensus 274 --~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~ 335 (597)
T 3oja_B 274 --FVKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNS 335 (597)
T ss_dssp --GTTCSSCCEEECTTS-CCCEEECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSC
T ss_pred --hcCccCCCEEECCCC-CCCCCCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCC
Confidence 688999999999995 68888888889999999999999755 688888889999999999987
No 47
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.89 E-value=2e-23 Score=234.04 Aligned_cols=257 Identities=16% Similarity=0.179 Sum_probs=179.3
Q ss_pred ccccccchhhcHHHHHHHHhcCCCCceEEEEEec----chhhHHHHHhcCCCccccCCCCccc-cCCce-eeccCCCcce
Q 037018 17 TSCSSKTVKVKVKAVLVWLFMLDSMWLQFLTAVA----YKTAFVADIYNNNVDLSAMNPKLRV-PKRFI-NKAFPVAFPV 90 (663)
Q Consensus 17 ~~~~~~G~~~~~~~i~~~L~~~~~~~~~vi~i~G----GKTtla~~v~~~~~~~~~~~~~~~~-~~~F~-~~~~~~~~~v 90 (663)
....+|||+.+++++.++|..... ..++|+|+| ||||||+++|++. ++ ..+|. .++| +
T Consensus 122 ~~~~~vGR~~~l~~L~~~L~~~~~-~~~~v~I~G~~GiGKTtLa~~~~~~~----------~~~~~~f~~~v~w-----v 185 (591)
T 1z6t_A 122 RPVVFVTRKKLVNAIQQKLSKLKG-EPGWVTIHGMAGCGKSVLAAEAVRDH----------SLLEGCFPGGVHW-----V 185 (591)
T ss_dssp CCSSCCCCHHHHHHHHHHHTTSTT-SCEEEEEECCTTSSHHHHHHHHHCCH----------HHHHHHCTTCEEE-----E
T ss_pred CCCeecccHHHHHHHHHHHhcccC-CCceEEEEcCCCCCHHHHHHHHHhch----------hHHHhhCCCceEE-----E
Confidence 345699999999999999986543 678999999 9999999999966 55 78894 7899 9
Q ss_pred EeCCCcchhHHHHHHHHHHHhCCCCCcchhhhh-HhhHHHHHHHHhhcC--CcEEEEEeCCCCChhhHHHHHhhCCCCCC
Q 037018 91 DVNCACNAQLNHILDDIIKSVMPPSRVNVIISE-DYKLKTIILRDYLTN--KKDFIVLDDVFDDREIWNDLEKFLPDNQN 167 (663)
Q Consensus 91 ~vs~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~-~~~l~~~~l~~~L~~--kr~LlVLDdv~~~~~~~~~l~~~~~~~~~ 167 (663)
+++......+..-+..++..+............ .+.+ ...+++.+.+ +++||||||||+ ...++.+ .+
T Consensus 186 ~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~-~~~l~~~l~~~~~~~LLVLDdv~~-~~~l~~l-------~~ 256 (591)
T 1z6t_A 186 SVGKQDKSGLLMKLQNLCTRLDQDESFSQRLPLNIEEA-KDRLRILMLRKHPRSLLILDDVWD-SWVLKAF-------DS 256 (591)
T ss_dssp EEESCCHHHHHHHHHHHHHHHCSSCCSCSSCCCSHHHH-HHHHHHHHHHTCTTCEEEEEEECC-HHHHHTT-------CS
T ss_pred ECCCCchHHHHHHHHHHHHHhccccccccCCCCCHHHH-HHHHHHHHccCCCCeEEEEeCCCC-HHHHHHh-------cC
Confidence 998763311233333344555531111000111 3455 6667777765 799999999999 6655432 56
Q ss_pred CceEEEEEeCCCCC-----ceEecc----------------------------------ccccchhHHHHHhhccccCCh
Q 037018 168 GSRVLILVTDPFLL-----TSFELE----------------------------------HGEKIRLNSALVGGPLIRIKY 208 (663)
Q Consensus 168 gskIiiT~r~~~~~-----~~~~l~----------------------------------~~~~iPlal~~~g~~L~~~~~ 208 (663)
||+||||||++... ..|++. .+.+.|+|+..+|+.++.. .
T Consensus 257 ~~~ilvTsR~~~~~~~~~~~~~~v~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~-~ 335 (591)
T 1z6t_A 257 QCQILLTTRDKSVTDSVMGPKYVVPVESSLGKEKGLEILSLFVNMKKADLPEQAHSIIKECKGSPLVVSLIGALLRDF-P 335 (591)
T ss_dssp SCEEEEEESCGGGGTTCCSCEEEEECCSSCCHHHHHHHHHHHHTSCGGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHS-T
T ss_pred CCeEEEECCCcHHHHhcCCCceEeecCCCCCHHHHHHHHHHHhCCCcccccHHHHHHHHHhCCCcHHHHHHHHHHhcC-c
Confidence 99999999976421 334432 1222299999999999832 2
Q ss_pred hhHHHHHhhcCCCCCCCCcCC-------CChhhhhhhc-ceeCCCChhhHHHHhhhcccCCCceechHHHHHHHHHcCC-
Q 037018 209 EGWQFFILHYGSMPLGSYFQG-------EAMPTIWRHI-YSVMELPFHLKVCCLYLCVFRPSIEISTRQLYQLWVAEVS- 279 (663)
Q Consensus 209 ~~W~~~~~~~~~~~l~~~~~~-------~~~~~i~~~l-~sy~~L~~~~k~cfl~~a~Fp~~~~i~~~~Li~~Wi~~g~- 279 (663)
..|...++. +...... .....+...+ .||+.||++.|.||+++|+||+++.|+.+.++..|.+++-
T Consensus 336 ~~w~~~l~~-----l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~~~~ 410 (591)
T 1z6t_A 336 NRWEYYLKQ-----LQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDMETEE 410 (591)
T ss_dssp TCHHHHHHH-----HHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCCHHH
T ss_pred hhHHHHHHH-----HHHhHHHHhhhccccchHHHHHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccCHHH
Confidence 378877776 3222111 1224563444 9999999999999999999999999999999999976522
Q ss_pred --C--------C----CCCCccceEEcCHHHHHHHHHhc
Q 037018 280 --K--------R----RAGGTIKACYVPGFVYTSLFFMA 304 (663)
Q Consensus 280 --~--------g----~~~~~~~~~~mhdll~dl~~~~~ 304 (663)
+ + ...+...+|+||+++++++....
T Consensus 411 ~~~~l~~L~~~~Ll~~~~~~~~~~~~~H~lv~~~~~~~~ 449 (591)
T 1z6t_A 411 VEDILQEFVNKSLLFCDRNGKSFRYYLHDLQVDFLTEKN 449 (591)
T ss_dssp HHHHHHHHHHTTSSEEEEETTEEEEECCHHHHHHHHHHT
T ss_pred HHHHHHHHHhCcCeEEecCCCccEEEEcHHHHHHHHhhh
Confidence 1 1 12344568999999999998774
No 48
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.89 E-value=8.8e-23 Score=211.02 Aligned_cols=221 Identities=17% Similarity=0.171 Sum_probs=176.9
Q ss_pred CCcccEEEeecCccccccccch-hHHhcCCCcccEEEecCCcCcccCccCCCCCCcCeEeccCCCCccchhhhccccccc
Q 037018 343 DMYLQSFLNHTLESDRLALIDC-ENFCKKFKHLRVLNLGSAILYQYPPGLENLFHLKYLKLNIPSLNCLPSLLCTLLNLQ 421 (663)
Q Consensus 343 ~~~lr~L~l~~~~~~~~~~~~l-~~~~~~l~~Lr~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~ 421 (663)
..+++.|.+.++... .+ +.+ .++++|++|++++|.+..+|..++.+++|++|++++|.+..+|..++++++|+
T Consensus 80 ~~~l~~L~L~~n~l~-----~lp~~l-~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~ 153 (328)
T 4fcg_A 80 QPGRVALELRSVPLP-----QFPDQA-FRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLR 153 (328)
T ss_dssp STTCCEEEEESSCCS-----SCCSCG-GGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCC
T ss_pred ccceeEEEccCCCch-----hcChhh-hhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCC
Confidence 466777777777654 34 334 67999999999999999999999999999999999999999999999999999
Q ss_pred EeeccCC-cccccchhhhc---------CcCCcEEEccCCCCCCCCCCCcCCCCCCcEeeCcCCC-CCChhhcCCCCCcc
Q 037018 422 TLEMPAS-YIDHSPEGIWM---------MQKLMHLNFGSINLPAPPKNYSSSLKNLIFISSLNPS-SCTPDILGRLPNVQ 490 (663)
Q Consensus 422 ~L~L~~~-~l~~lp~~l~~---------l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~ 490 (663)
+|++++| .++.+|..+.. +++|++|++++| ....+|..++.+++|+.|++++|. ..++..++.+++|+
T Consensus 154 ~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n-~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~ 232 (328)
T 4fcg_A 154 ELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWT-GIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLE 232 (328)
T ss_dssp EEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEE-CCCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCC
T ss_pred EEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCC-CcCcchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCC
Confidence 9999998 77888877654 888999998844 444778778888888888888877 66666777888888
Q ss_pred EEEeecCCCccccchhhhhcCCCCCCEEEEeecCccccccccccccccCCCCceEEEEecccCCCCChhhhcCCCCCcEE
Q 037018 491 TLRISGDLSHYHSGVSKSLCELHKLECLQLVHEGRMWQLSRMVLSEYQFPPCLTQLSLSNTQLMEDPMPALEKLPHLEVL 570 (663)
Q Consensus 491 ~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~lp~~~~~l~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L 570 (663)
.|++++| ......+..+..+++|++|++++|+..+.+|. .+.. +++|+.|++++|.+.+..+..++++++|+.+
T Consensus 233 ~L~Ls~n--~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~---~~~~-l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l 306 (328)
T 4fcg_A 233 ELDLRGC--TALRNYPPIFGGRAPLKRLILKDCSNLLTLPL---DIHR-LTQLEKLDLRGCVNLSRLPSLIAQLPANCII 306 (328)
T ss_dssp EEECTTC--TTCCBCCCCTTCCCCCCEEECTTCTTCCBCCT---TGGG-CTTCCEEECTTCTTCCCCCGGGGGSCTTCEE
T ss_pred EEECcCC--cchhhhHHHhcCCCCCCEEECCCCCchhhcch---hhhc-CCCCCEEeCCCCCchhhccHHHhhccCceEE
Confidence 8888887 46666677777778888888887666677777 7777 7888888888877777777778888888888
Q ss_pred EeecCC
Q 037018 571 KLKQNS 576 (663)
Q Consensus 571 ~L~~~~ 576 (663)
.+..+.
T Consensus 307 ~l~~~~ 312 (328)
T 4fcg_A 307 LVPPHL 312 (328)
T ss_dssp ECCGGG
T ss_pred eCCHHH
Confidence 777443
No 49
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.88 E-value=4.1e-22 Score=208.54 Aligned_cols=270 Identities=17% Similarity=0.165 Sum_probs=138.6
Q ss_pred CCcccEEEecCCcCcccCccCCCCCCcCeEeccCCCCccchh-hhcccccccEeeccCCcccccc-hhhhcCcCCcEEEc
Q 037018 371 FKHLRVLNLGSAILYQYPPGLENLFHLKYLKLNIPSLNCLPS-LLCTLLNLQTLEMPASYIDHSP-EGIWMMQKLMHLNF 448 (663)
Q Consensus 371 l~~Lr~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~l~~lp-~~l~~l~~L~~L~l 448 (663)
|+...+.+.+++.++.+|..+. ++|++|++++|.++.+|. .++++++|++|++++|.+..++ ..+..+++|++|++
T Consensus 30 C~~~~~c~~~~~~l~~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (353)
T 2z80_A 30 CDRNGICKGSSGSLNSIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDL 107 (353)
T ss_dssp ECTTSEEECCSTTCSSCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCCCeEeeCCCCCccccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEEC
Confidence 3444444555555555554332 245555555555554443 4455555555555555444442 23455555555555
Q ss_pred cCCCCCCCCCCC-cCCCCCCcEeeCcCCC-CCChh--hcCCCCCccEEEeecCCCccccchhhhhcCCCCCCEEEEeecC
Q 037018 449 GSINLPAPPKNY-SSSLKNLIFISSLNPS-SCTPD--ILGRLPNVQTLRISGDLSHYHSGVSKSLCELHKLECLQLVHEG 524 (663)
Q Consensus 449 ~~~~~~~~~~~~-l~~l~~L~~L~l~~~~-~~~~~--~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 524 (663)
++| ....+|.. ++.+++|++|+++++. ..++. .++.+++|+.|++++|. ......+..+..+++|++|++++ +
T Consensus 108 s~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~~l~~L~~L~l~~-n 184 (353)
T 2z80_A 108 SYN-YLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMD-TFTKIQRKDFAGLTFLEELEIDA-S 184 (353)
T ss_dssp CSS-CCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESS-SCCEECTTTTTTCCEEEEEEEEE-T
T ss_pred CCC-cCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCc-cccccCHHHccCCCCCCEEECCC-C
Confidence 522 22223322 4455555555555554 33332 45556666666666551 12222234455566666666665 4
Q ss_pred ccccc-cccccccccCCCCceEEEEecccCCCCChhhhcCCCCCcEEEeecCCCCCceeeec-CCCCCCcccEEEccCCC
Q 037018 525 RMWQL-SRMVLSEYQFPPCLTQLSLSNTQLMEDPMPALEKLPHLEVLKLKQNSYSERKLACV-GSGSFPQLKILHLKSML 602 (663)
Q Consensus 525 ~l~~l-p~~~~~l~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~-~~~~~~~L~~L~L~~~~ 602 (663)
.+..+ |. .+.. +++|++|++++|.+.......+..+++|+.|++++|.+.+..+... .....+.++.++++++.
T Consensus 185 ~l~~~~~~---~l~~-l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~ 260 (353)
T 2z80_A 185 DLQSYEPK---SLKS-IQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVK 260 (353)
T ss_dssp TCCEECTT---TTTT-CSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCB
T ss_pred CcCccCHH---HHhc-cccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhcccccccc
Confidence 44433 44 5555 6666666666666543333334456666666666666554332110 01234456666666542
Q ss_pred Cc----cccccccccccccceEEeecCCCCCCCcccc-CCCCCCCEEEecCCC
Q 037018 603 WL----EEWTMGAGAMPKLESLIVNPCAYLRKLPEEL-WCIKSLCKLELHWPQ 650 (663)
Q Consensus 603 ~l----~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~l-~~l~sL~~L~l~~c~ 650 (663)
.- ..+|..+..+++|+.|++++|.. +.+|..+ ..+++|+.|++++||
T Consensus 261 l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l-~~i~~~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 261 ITDESLFQVMKLLNQISGLLELEFSRNQL-KSVPDGIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp CCHHHHHHHHHHHHTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSC
T ss_pred ccCcchhhhHHHHhcccCCCEEECCCCCC-CccCHHHHhcCCCCCEEEeeCCC
Confidence 21 13555566777777777777753 3566553 677777777777765
No 50
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.87 E-value=7.4e-22 Score=202.30 Aligned_cols=222 Identities=22% Similarity=0.273 Sum_probs=141.7
Q ss_pred CcccEEEecCCcCcccCcc-CCCCCCcCeEeccCCCCccc---hhhhcccccccEeeccCCcccccchhhhcCcCCcEEE
Q 037018 372 KHLRVLNLGSAILYQYPPG-LENLFHLKYLKLNIPSLNCL---PSLLCTLLNLQTLEMPASYIDHSPEGIWMMQKLMHLN 447 (663)
Q Consensus 372 ~~Lr~L~L~~~~l~~lp~~-~~~l~~L~~L~L~~~~i~~l---p~~i~~L~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~ 447 (663)
++|++|++++|.++.+|.. +.++++|++|++++|.+..+ |..+..+++|++|++++|.+..+|..+..+++|++|+
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~ 107 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLD 107 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEE
T ss_pred CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCCEEE
Confidence 5677777777777766654 56777777777777776644 5566667777777777777777776677777777777
Q ss_pred ccCCCCCCCCC-CCcCCCCCCcEeeCcCCC--CCChhhcCCCCCccEEEeecCCCcccc-chhhhhcCCCCCCEEEEeec
Q 037018 448 FGSINLPAPPK-NYSSSLKNLIFISSLNPS--SCTPDILGRLPNVQTLRISGDLSHYHS-GVSKSLCELHKLECLQLVHE 523 (663)
Q Consensus 448 l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~~~l~~l~~L~~L~l~~~ 523 (663)
+++|.+....+ ..+..+++|+.|++.++. ...+..++.+++|+.|++++| .... ..+..+..+++|++|++++
T Consensus 108 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n--~l~~~~~~~~~~~l~~L~~L~Ls~- 184 (306)
T 2z66_A 108 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN--SFQENFLPDIFTELRNLTFLDLSQ- 184 (306)
T ss_dssp CTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTC--EEGGGEECSCCTTCTTCCEEECTT-
T ss_pred CCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCC--ccccccchhHHhhCcCCCEEECCC-
Confidence 77433322222 356667777777777666 344455666777777777766 2332 3455666667777777765
Q ss_pred Cccccc-cccccccccCCCCceEEEEecccCCCCChhhhcCCCCCcEEEeecCCCCCceeeecCCCCCC-cccEEEccCC
Q 037018 524 GRMWQL-SRMVLSEYQFPPCLTQLSLSNTQLMEDPMPALEKLPHLEVLKLKQNSYSERKLACVGSGSFP-QLKILHLKSM 601 (663)
Q Consensus 524 ~~l~~l-p~~~~~l~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~-~L~~L~L~~~ 601 (663)
+.++.+ |. .+.. +++|+.|++++|.+.......+..+++|+.|++++|.+.+..+.. +..++ +|+.|+|++|
T Consensus 185 n~l~~~~~~---~~~~-l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~--~~~~~~~L~~L~L~~N 258 (306)
T 2z66_A 185 CQLEQLSPT---AFNS-LSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQE--LQHFPSSLAFLNLTQN 258 (306)
T ss_dssp SCCCEECTT---TTTT-CTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSS--CCCCCTTCCEEECTTC
T ss_pred CCcCCcCHH---HhcC-CCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHH--HHhhhccCCEEEccCC
Confidence 555554 33 5555 667777777777665555555666677777777766665544333 34453 6777777665
Q ss_pred C
Q 037018 602 L 602 (663)
Q Consensus 602 ~ 602 (663)
+
T Consensus 259 ~ 259 (306)
T 2z66_A 259 D 259 (306)
T ss_dssp C
T ss_pred C
Confidence 3
No 51
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.87 E-value=2.8e-21 Score=218.54 Aligned_cols=322 Identities=17% Similarity=0.101 Sum_probs=214.6
Q ss_pred cCCCceeEEEEEecccccccccccC-CCcccEEEeecCccccccccch-hHHhcCCCcccEEEecCCcCcccCc-cCCCC
Q 037018 318 ETLANVKRCFILEDLIDEFISLEHS-DMYLQSFLNHTLESDRLALIDC-ENFCKKFKHLRVLNLGSAILYQYPP-GLENL 394 (663)
Q Consensus 318 ~~~~~~r~lsi~~~~~~~~~~~~~~-~~~lr~L~l~~~~~~~~~~~~l-~~~~~~l~~Lr~L~L~~~~l~~lp~-~~~~l 394 (663)
..|..+++|.+..+.+..+++.... +++|+.|.+.++... .+ +..|.++++|++|+|++|.++.+|. .|.++
T Consensus 49 ~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~-----~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L 123 (635)
T 4g8a_A 49 NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-----TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGL 123 (635)
T ss_dssp SSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC-----EECTTTTTTCTTCCEEECTTCCCCEECGGGGTTC
T ss_pred CCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCC-----CcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCC
Confidence 3567899999999988887744444 889999999998765 33 4444889999999999999987775 47899
Q ss_pred CCcCeEeccCCCCccchh-hhcccccccEeeccCCcccc--cchhhhcCcCCcEEEccCCCCCCCCCCCcC---------
Q 037018 395 FHLKYLKLNIPSLNCLPS-LLCTLLNLQTLEMPASYIDH--SPEGIWMMQKLMHLNFGSINLPAPPKNYSS--------- 462 (663)
Q Consensus 395 ~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~l~~--lp~~l~~l~~L~~L~l~~~~~~~~~~~~l~--------- 462 (663)
++|++|++++|.++.+|. .++++++|++|++++|.+.. +|..+..+++|++|++++|.+....+..+.
T Consensus 124 ~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~ 203 (635)
T 4g8a_A 124 SSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLN 203 (635)
T ss_dssp TTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCC
T ss_pred CCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhh
Confidence 999999999999998875 58899999999999997654 567788899999999885433211111000
Q ss_pred --------------------------------------------------------------------------------
Q 037018 463 -------------------------------------------------------------------------------- 462 (663)
Q Consensus 463 -------------------------------------------------------------------------------- 462 (663)
T Consensus 204 ~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~ 283 (635)
T 4g8a_A 204 LSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTI 283 (635)
T ss_dssp CEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEE
T ss_pred hhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhh
Confidence
Q ss_pred ------------------------------------------CCCCCcEeeCcCCC-CC--------------------C
Q 037018 463 ------------------------------------------SLKNLIFISSLNPS-SC--------------------T 479 (663)
Q Consensus 463 ------------------------------------------~l~~L~~L~l~~~~-~~--------------------~ 479 (663)
...+++.|++.++. .. .
T Consensus 284 ~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~ 363 (635)
T 4g8a_A 284 EEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGN 363 (635)
T ss_dssp EEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCC
T ss_pred hhhhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCC
Confidence 00112222222221 00 0
Q ss_pred hhhcCCCCCccEEEeecCCCccccchhhh-----------------------hcCCCCCCEEEEeec-------------
Q 037018 480 PDILGRLPNVQTLRISGDLSHYHSGVSKS-----------------------LCELHKLECLQLVHE------------- 523 (663)
Q Consensus 480 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-----------------------l~~l~~L~~L~l~~~------------- 523 (663)
+.....+++|+.|+++.+........+.. +..+++|+.+++..+
T Consensus 364 ~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~ 443 (635)
T 4g8a_A 364 AFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLS 443 (635)
T ss_dssp BCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTT
T ss_pred Ccccccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhcccccccccccccc
Confidence 01122467788888877641111111111 222333333333321
Q ss_pred -----------CccccccccccccccCCCCceEEEEecccCCC-CChhhhcCCCCCcEEEeecCCCCCceeeecCCCCCC
Q 037018 524 -----------GRMWQLSRMVLSEYQFPPCLTQLSLSNTQLME-DPMPALEKLPHLEVLKLKQNSYSERKLACVGSGSFP 591 (663)
Q Consensus 524 -----------~~l~~lp~~~~~l~~~l~~L~~L~L~~~~l~~-~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~ 591 (663)
+.+..++.. .+.. +++|+.|++++|.... ..+..+..+++|+.|+|++|.+.+..+.. +.+++
T Consensus 444 l~~l~~l~ls~n~l~~~~~~--~~~~-~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~--f~~l~ 518 (635)
T 4g8a_A 444 LRNLIYLDISHTHTRVAFNG--IFNG-LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTA--FNSLS 518 (635)
T ss_dssp CTTCCEEECTTSCCEECCTT--TTTT-CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTT--TTTCT
T ss_pred cccccccccccccccccccc--cccc-chhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHH--HcCCC
Confidence 222222210 2333 6777777777775322 34456788899999999988887655443 67889
Q ss_pred cccEEEccCCCCccccc-cccccccccceEEeecCCCCCCCccccCCC-CCCCEEEecCCC
Q 037018 592 QLKILHLKSMLWLEEWT-MGAGAMPKLESLIVNPCAYLRKLPEELWCI-KSLCKLELHWPQ 650 (663)
Q Consensus 592 ~L~~L~L~~~~~l~~l~-~~~~~l~~L~~L~l~~c~~l~~l~~~l~~l-~sL~~L~l~~c~ 650 (663)
+|+.|+|++| .+..++ ..+..+++|+.|++++|......|..+.++ ++|+.|+++++|
T Consensus 519 ~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np 578 (635)
T 4g8a_A 519 SLQVLNMSHN-NFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 578 (635)
T ss_dssp TCCEEECTTS-CCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCC
T ss_pred CCCEEECCCC-cCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCC
Confidence 9999999986 566554 457889999999999998777777788887 689999998755
No 52
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.87 E-value=3.5e-21 Score=207.89 Aligned_cols=288 Identities=21% Similarity=0.200 Sum_probs=169.1
Q ss_pred CCCceeEEEEEecccccccccccCCCcccEEEeecCccccccccchhHHhcCCCcccEEEecCCcCcccCccCCCCCCcC
Q 037018 319 TLANVKRCFILEDLIDEFISLEHSDMYLQSFLNHTLESDRLALIDCENFCKKFKHLRVLNLGSAILYQYPPGLENLFHLK 398 (663)
Q Consensus 319 ~~~~~r~lsi~~~~~~~~~~~~~~~~~lr~L~l~~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~l~~lp~~~~~l~~L~ 398 (663)
.+.+++++.+..+.+..++. ..++++.|.+.++.... ++.+ .++|++|++++|.++.+| .++.+++|+
T Consensus 89 ~~~~L~~L~l~~n~l~~lp~---~~~~L~~L~l~~n~l~~-----l~~~---~~~L~~L~L~~n~l~~lp-~~~~l~~L~ 156 (454)
T 1jl5_A 89 LPPHLESLVASCNSLTELPE---LPQSLKSLLVDNNNLKA-----LSDL---PPLLEYLGVSNNQLEKLP-ELQNSSFLK 156 (454)
T ss_dssp CCTTCSEEECCSSCCSSCCC---CCTTCCEEECCSSCCSC-----CCSC---CTTCCEEECCSSCCSSCC-CCTTCTTCC
T ss_pred CcCCCCEEEccCCcCCcccc---ccCCCcEEECCCCccCc-----ccCC---CCCCCEEECcCCCCCCCc-ccCCCCCCC
Confidence 44567777777766555431 24677777777765532 1111 157777777777777766 477777777
Q ss_pred eEeccCCCCccchhhhcccccccEeeccCCcccccchhhhcCcCCcEEEccCCCCCCCCCCCcCCCCCCcEeeCcCCC-C
Q 037018 399 YLKLNIPSLNCLPSLLCTLLNLQTLEMPASYIDHSPEGIWMMQKLMHLNFGSINLPAPPKNYSSSLKNLIFISSLNPS-S 477 (663)
Q Consensus 399 ~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~ 477 (663)
+|++++|.++.+|..+ .+|++|++++|.+..+| .++.+++|++|++++ +....+|... ++|+.|++.+|. .
T Consensus 157 ~L~l~~N~l~~lp~~~---~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~-N~l~~l~~~~---~~L~~L~l~~n~l~ 228 (454)
T 1jl5_A 157 IIDVDNNSLKKLPDLP---PSLEFIAAGNNQLEELP-ELQNLPFLTAIYADN-NSLKKLPDLP---LSLESIVAGNNILE 228 (454)
T ss_dssp EEECCSSCCSCCCCCC---TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCS-SCCSSCCCCC---TTCCEEECCSSCCS
T ss_pred EEECCCCcCcccCCCc---ccccEEECcCCcCCcCc-cccCCCCCCEEECCC-CcCCcCCCCc---CcccEEECcCCcCC
Confidence 7777777777666433 47777777777766666 467777777777773 3333344322 466777777666 4
Q ss_pred CChhhcCCCCCccEEEeecCCCccccchhhhhcCCCCCCEEEEeecCccccccccccccccCCCCceEEEEecccCCC--
Q 037018 478 CTPDILGRLPNVQTLRISGDLSHYHSGVSKSLCELHKLECLQLVHEGRMWQLSRMVLSEYQFPPCLTQLSLSNTQLME-- 555 (663)
Q Consensus 478 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~lp~~~~~l~~~l~~L~~L~L~~~~l~~-- 555 (663)
.++ .++.+++|+.|++++|. . ..++. .+++|+.|++++ +.+..+|. . +++|+.|++++|.+.+
T Consensus 229 ~lp-~~~~l~~L~~L~l~~N~--l-~~l~~---~~~~L~~L~l~~-N~l~~l~~---~----~~~L~~L~ls~N~l~~l~ 293 (454)
T 1jl5_A 229 ELP-ELQNLPFLTTIYADNNL--L-KTLPD---LPPSLEALNVRD-NYLTDLPE---L----PQSLTFLDVSENIFSGLS 293 (454)
T ss_dssp SCC-CCTTCTTCCEEECCSSC--C-SSCCS---CCTTCCEEECCS-SCCSCCCC---C----CTTCCEEECCSSCCSEES
T ss_pred ccc-ccCCCCCCCEEECCCCc--C-Ccccc---cccccCEEECCC-CcccccCc---c----cCcCCEEECcCCccCccc
Confidence 444 36667777777777662 2 12222 125566666664 45555553 1 3445555555544332
Q ss_pred CChh-------------hhcCC-CCCcEEEeecCCCCCceeeecCCCCCCcccEEEccCCCCccccccccccccccceEE
Q 037018 556 DPMP-------------ALEKL-PHLEVLKLKQNSYSERKLACVGSGSFPQLKILHLKSMLWLEEWTMGAGAMPKLESLI 621 (663)
Q Consensus 556 ~~~~-------------~l~~l-~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~ 621 (663)
..+. .+..+ ++|+.|++++|.+.+. ...+++|+.|++++| .+..+|. .+++|+.|+
T Consensus 294 ~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~l------p~~~~~L~~L~L~~N-~l~~lp~---~l~~L~~L~ 363 (454)
T 1jl5_A 294 ELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIEL------PALPPRLERLIASFN-HLAEVPE---LPQNLKQLH 363 (454)
T ss_dssp CCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSCC------CCCCTTCCEEECCSS-CCSCCCC---CCTTCCEEE
T ss_pred CcCCcCCEEECcCCcCCcccCCcCcCCEEECCCCccccc------cccCCcCCEEECCCC-ccccccc---hhhhccEEE
Confidence 1110 11223 4778888877776651 123678899999885 5667776 578899999
Q ss_pred eecCCCCC--CCccccCCC-------------CCCCEEEecCCCH
Q 037018 622 VNPCAYLR--KLPEELWCI-------------KSLCKLELHWPQP 651 (663)
Q Consensus 622 l~~c~~l~--~l~~~l~~l-------------~sL~~L~l~~c~~ 651 (663)
+++|+... .+|..+..+ ++|+.|++++++-
T Consensus 364 L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l 408 (454)
T 1jl5_A 364 VEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPL 408 (454)
T ss_dssp CCSSCCSSCCCCCTTCCEEECCC----------------------
T ss_pred CCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcC
Confidence 99988766 677777666 7899999988763
No 53
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.86 E-value=2e-21 Score=196.83 Aligned_cols=264 Identities=16% Similarity=0.128 Sum_probs=142.4
Q ss_pred cEEEecCCcCcccCccCCCCCCcCeEeccCCCCccch-hhhcccccccEeeccCCccccc-chhhhcCcCCcEEEccCCC
Q 037018 375 RVLNLGSAILYQYPPGLENLFHLKYLKLNIPSLNCLP-SLLCTLLNLQTLEMPASYIDHS-PEGIWMMQKLMHLNFGSIN 452 (663)
Q Consensus 375 r~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~l~~l-p~~l~~l~~L~~L~l~~~~ 452 (663)
++++.+++.++.+|..+ .++|++|++++|.++.+| ..++.+++|++|++++|.+..+ |..+..+++|++|++++|.
T Consensus 14 ~~~~c~~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 91 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91 (285)
T ss_dssp CEEECCSSCCSSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCT
T ss_pred eEEEcCcCCcccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCC
Confidence 44555555555555433 345666666666666554 3455566666666666655444 4445556666666666333
Q ss_pred -CCCCCCCCcCCCCCCcEeeCcCCC--CCChhhcCCCCCccEEEeecCCCccccchhhhhcCCCCCCEEEEeecCccccc
Q 037018 453 -LPAPPKNYSSSLKNLIFISSLNPS--SCTPDILGRLPNVQTLRISGDLSHYHSGVSKSLCELHKLECLQLVHEGRMWQL 529 (663)
Q Consensus 453 -~~~~~~~~l~~l~~L~~L~l~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l 529 (663)
.....|..+..+++|++|++.++. ...+..+..+++|+.|++++| ......+..+..+++|++|++++ +.++.+
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n--~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~ 168 (285)
T 1ozn_A 92 QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDN--ALQALPDDTFRDLGNLTHLFLHG-NRISSV 168 (285)
T ss_dssp TCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSS--CCCCCCTTTTTTCTTCCEEECCS-SCCCEE
T ss_pred CccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCC--cccccCHhHhccCCCccEEECCC-Cccccc
Confidence 222334455566666666666655 223444566666666666665 23333333455666666666665 555555
Q ss_pred cccccccccCCCCceEEEEecccCCCCChhhhcCCCCCcEEEeecCCCCCceeeecCCCCCCcccEEEccCCCCcccccc
Q 037018 530 SRMVLSEYQFPPCLTQLSLSNTQLMEDPMPALEKLPHLEVLKLKQNSYSERKLACVGSGSFPQLKILHLKSMLWLEEWTM 609 (663)
Q Consensus 530 p~~~~~l~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~ 609 (663)
|.. .+.. +++|+.|++++|.+....+..+..+++|+.|++++|.+.+..... +..+++|+.|++++|+..-..+
T Consensus 169 ~~~--~~~~-l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~--~~~l~~L~~L~l~~N~~~c~~~- 242 (285)
T 1ozn_A 169 PER--AFRG-LHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEA--LAPLRALQYLRLNDNPWVCDCR- 242 (285)
T ss_dssp CTT--TTTT-CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHH--HTTCTTCCEEECCSSCEECSGG-
T ss_pred CHH--HhcC-ccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHH--cccCcccCEEeccCCCccCCCC-
Confidence 541 2445 666677777666665555566666667777777666666543322 3566667777776653221111
Q ss_pred ccccccccceEEeecCCCCCCCccccCC--CCCCCEEEecCC
Q 037018 610 GAGAMPKLESLIVNPCAYLRKLPEELWC--IKSLCKLELHWP 649 (663)
Q Consensus 610 ~~~~l~~L~~L~l~~c~~l~~l~~~l~~--l~sL~~L~l~~c 649 (663)
...-+..|+.+....+...-..|..+.+ +..++..++.+|
T Consensus 243 ~~~~~~~l~~~~~~~~~~~c~~p~~l~g~~l~~l~~~~l~~C 284 (285)
T 1ozn_A 243 ARPLWAWLQKFRGSSSEVPCSLPQRLAGRDLKRLAANDLQGC 284 (285)
T ss_dssp GHHHHHHHHHCCSEECCCBEEESGGGTTCBGGGSCGGGSCCC
T ss_pred cHHHHHHHHhcccccCccccCCchHhCCcChhhcCHHHhccC
Confidence 1111233444445554444344554433 455555566666
No 54
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.86 E-value=2.7e-21 Score=202.36 Aligned_cols=249 Identities=16% Similarity=0.147 Sum_probs=178.1
Q ss_pred CcccEEEecCCcCcccCc-cCCCCCCcCeEeccCCCCccch-hhhcccccccEeeccCCcccccchh-hhcCcCCcEEEc
Q 037018 372 KHLRVLNLGSAILYQYPP-GLENLFHLKYLKLNIPSLNCLP-SLLCTLLNLQTLEMPASYIDHSPEG-IWMMQKLMHLNF 448 (663)
Q Consensus 372 ~~Lr~L~L~~~~l~~lp~-~~~~l~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~l~~lp~~-l~~l~~L~~L~l 448 (663)
++|++|++++|.++.+|. .+.++++|++|++++|.++.++ ..++++++|++|++++|.+..+|.. +..+++|++|++
T Consensus 52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 131 (353)
T 2z80_A 52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNL 131 (353)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEEC
T ss_pred ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEEC
Confidence 578888888888876654 5778888888888888887663 5677888888888888877777765 777888888888
Q ss_pred cCCCCCCCCCC--CcCCCCCCcEeeCcCCC--CC-ChhhcCCCCCccEEEeecCCCccccchhhhhcCCCCCCEEEEeec
Q 037018 449 GSINLPAPPKN--YSSSLKNLIFISSLNPS--SC-TPDILGRLPNVQTLRISGDLSHYHSGVSKSLCELHKLECLQLVHE 523 (663)
Q Consensus 449 ~~~~~~~~~~~--~l~~l~~L~~L~l~~~~--~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 523 (663)
+ ++....+|. .+..+++|++|++.++. .. .+..++.+++|+.|++++| ......+..+..+++|++|++++
T Consensus 132 ~-~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n--~l~~~~~~~l~~l~~L~~L~l~~- 207 (353)
T 2z80_A 132 L-GNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDAS--DLQSYEPKSLKSIQNVSHLILHM- 207 (353)
T ss_dssp T-TCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEET--TCCEECTTTTTTCSEEEEEEEEC-
T ss_pred C-CCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCC--CcCccCHHHHhccccCCeecCCC-
Confidence 8 444444554 57778888888888774 32 3456778888888888887 45555577778888888888886
Q ss_pred Ccccccccccccc-ccCCCCceEEEEecccCCCCChhh---hcCCCCCcEEEeecCCCCCceee---ecCCCCCCcccEE
Q 037018 524 GRMWQLSRMVLSE-YQFPPCLTQLSLSNTQLMEDPMPA---LEKLPHLEVLKLKQNSYSERKLA---CVGSGSFPQLKIL 596 (663)
Q Consensus 524 ~~l~~lp~~~~~l-~~~l~~L~~L~L~~~~l~~~~~~~---l~~l~~L~~L~L~~~~~~~~~~~---~~~~~~~~~L~~L 596 (663)
+.++.+|. .+ .. +++|+.|++++|.+....... ....+.++.++++++.+.+.... .. +..+++|+.|
T Consensus 208 n~l~~~~~---~~~~~-~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~-l~~l~~L~~L 282 (353)
T 2z80_A 208 KQHILLLE---IFVDV-TSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKL-LNQISGLLEL 282 (353)
T ss_dssp SCSTTHHH---HHHHH-TTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHH-HHTCTTCCEE
T ss_pred Cccccchh---hhhhh-cccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHH-HhcccCCCEE
Confidence 66777765 33 34 788888888888876544332 33467788888887776653211 11 4577888888
Q ss_pred EccCCCCcccccccc-ccccccceEEeecCCCCCC
Q 037018 597 HLKSMLWLEEWTMGA-GAMPKLESLIVNPCAYLRK 630 (663)
Q Consensus 597 ~L~~~~~l~~l~~~~-~~l~~L~~L~l~~c~~l~~ 630 (663)
++++| .+..+|... ..+++|+.|++++|+....
T Consensus 283 ~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N~~~~~ 316 (353)
T 2z80_A 283 EFSRN-QLKSVPDGIFDRLTSLQKIWLHTNPWDCS 316 (353)
T ss_dssp ECCSS-CCCCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred ECCCC-CCCccCHHHHhcCCCCCEEEeeCCCccCc
Confidence 88885 566777664 7888888888888875543
No 55
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.86 E-value=1.5e-21 Score=199.89 Aligned_cols=242 Identities=19% Similarity=0.183 Sum_probs=174.0
Q ss_pred cEEEecCCcCcccCccCCCCCCcCeEeccCCCCccchhh-hcccccccEeeccCCccccc---chhhhcCcCCcEEEccC
Q 037018 375 RVLNLGSAILYQYPPGLENLFHLKYLKLNIPSLNCLPSL-LCTLLNLQTLEMPASYIDHS---PEGIWMMQKLMHLNFGS 450 (663)
Q Consensus 375 r~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~l~~l---p~~l~~l~~L~~L~l~~ 450 (663)
+.++.+++.++.+|..+. ++|++|++++|.++.+|.. ++++++|++|++++|.+..+ |..+..+++|++|+++
T Consensus 10 ~~l~c~~~~l~~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls- 86 (306)
T 2z66_A 10 TEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS- 86 (306)
T ss_dssp TEEECCSSCCSSCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC-
T ss_pred CEEEcCCCCcccCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECC-
Confidence 456777777777776543 5788888888888877754 57788888888888866544 5667778888888888
Q ss_pred CCCCCCCCCCcCCCCCCcEeeCcCCC-CCCh--hhcCCCCCccEEEeecCCCccccchhhhhcCCCCCCEEEEeecCccc
Q 037018 451 INLPAPPKNYSSSLKNLIFISSLNPS-SCTP--DILGRLPNVQTLRISGDLSHYHSGVSKSLCELHKLECLQLVHEGRMW 527 (663)
Q Consensus 451 ~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~--~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~ 527 (663)
++....+|..+..+++|++|++.++. ...+ ..+..+++|+.|++++| ......+..+..+++|++|++++ +.+.
T Consensus 87 ~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n--~l~~~~~~~~~~l~~L~~L~l~~-n~l~ 163 (306)
T 2z66_A 87 FNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT--HTRVAFNGIFNGLSSLEVLKMAG-NSFQ 163 (306)
T ss_dssp SCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTS--CCEECSTTTTTTCTTCCEEECTT-CEEG
T ss_pred CCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCC--cCCccchhhcccCcCCCEEECCC-Cccc
Confidence 44444566667778888888888777 3332 46777888888888887 45555566677778888888886 5665
Q ss_pred c--ccccccccccCCCCceEEEEecccCCCCChhhhcCCCCCcEEEeecCCCCCceeeecCCCCCCcccEEEccCCCCcc
Q 037018 528 Q--LSRMVLSEYQFPPCLTQLSLSNTQLMEDPMPALEKLPHLEVLKLKQNSYSERKLACVGSGSFPQLKILHLKSMLWLE 605 (663)
Q Consensus 528 ~--lp~~~~~l~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~ 605 (663)
. +|. .+.. +++|+.|++++|.+....+..+..+++|+.|++++|.+.+..... +..+++|+.|++++|....
T Consensus 164 ~~~~~~---~~~~-l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~--~~~l~~L~~L~L~~N~l~~ 237 (306)
T 2z66_A 164 ENFLPD---IFTE-LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFP--YKCLNSLQVLDYSLNHIMT 237 (306)
T ss_dssp GGEECS---CCTT-CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGG--GTTCTTCCEEECTTSCCCB
T ss_pred cccchh---HHhh-CcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhh--ccCcccCCEeECCCCCCcc
Confidence 3 666 6777 888888888888877666677778888888888888776544322 4677888888888865444
Q ss_pred cccccccccc-ccceEEeecCCCC
Q 037018 606 EWTMGAGAMP-KLESLIVNPCAYL 628 (663)
Q Consensus 606 ~l~~~~~~l~-~L~~L~l~~c~~l 628 (663)
..+..+..+| +|+.|++++|+..
T Consensus 238 ~~~~~~~~~~~~L~~L~L~~N~~~ 261 (306)
T 2z66_A 238 SKKQELQHFPSSLAFLNLTQNDFA 261 (306)
T ss_dssp CSSSSCCCCCTTCCEEECTTCCEE
T ss_pred cCHHHHHhhhccCCEEEccCCCee
Confidence 5566667774 7888888887754
No 56
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.86 E-value=1e-20 Score=204.11 Aligned_cols=238 Identities=17% Similarity=0.131 Sum_probs=108.0
Q ss_pred EEEecCCcCcccCccCCCCCCcCeEeccCCCCccch-hhhcccccccEeeccCCcccccc-hhhhcCcCCcEEEccCCCC
Q 037018 376 VLNLGSAILYQYPPGLENLFHLKYLKLNIPSLNCLP-SLLCTLLNLQTLEMPASYIDHSP-EGIWMMQKLMHLNFGSINL 453 (663)
Q Consensus 376 ~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~l~~lp-~~l~~l~~L~~L~l~~~~~ 453 (663)
.++.++..++.+|..+. +++++|+|++|.+..++ ..+.++++|++|++++|.+..++ ..+..+++|++|++++|.+
T Consensus 47 ~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l 124 (440)
T 3zyj_A 47 KVICVRKNLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRL 124 (440)
T ss_dssp EEECCSCCCSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCC
T ss_pred EEEeCCCCcCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcC
Confidence 44444444444444332 34455555555544332 34444555555555555444433 2344455555555552222
Q ss_pred CCCCCCCcCCCCCCcEeeCcCCC-CCC-hhhcCCCCCccEEEeecCCCccccchh-hhhcCCCCCCEEEEeecCcccccc
Q 037018 454 PAPPKNYSSSLKNLIFISSLNPS-SCT-PDILGRLPNVQTLRISGDLSHYHSGVS-KSLCELHKLECLQLVHEGRMWQLS 530 (663)
Q Consensus 454 ~~~~~~~l~~l~~L~~L~l~~~~-~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~l~~lp 530 (663)
....+..+..+++|++|+++++. ..+ +..+..+++|+.|+++++. ....++ ..+..+++|++|++++ +.++.+|
T Consensus 125 ~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~--~l~~i~~~~~~~l~~L~~L~L~~-n~l~~~~ 201 (440)
T 3zyj_A 125 TTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELK--RLSYISEGAFEGLSNLRYLNLAM-CNLREIP 201 (440)
T ss_dssp SSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCT--TCCEECTTTTTTCSSCCEEECTT-SCCSSCC
T ss_pred CeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCC--CcceeCcchhhcccccCeecCCC-CcCcccc
Confidence 22222234444555555554444 221 1234445555555555431 212222 2344455555555554 4455554
Q ss_pred ccccccccCCCCceEEEEecccCCCCChhhhcCCCCCcEEEeecCCCCCceeeecCCCCCCcccEEEccCCCCcccccc-
Q 037018 531 RMVLSEYQFPPCLTQLSLSNTQLMEDPMPALEKLPHLEVLKLKQNSYSERKLACVGSGSFPQLKILHLKSMLWLEEWTM- 609 (663)
Q Consensus 531 ~~~~~l~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~- 609 (663)
.+.. +++|+.|++++|.+....+..+.++++|+.|++++|.+.+..... +..+++|+.|+|++| .+..++.
T Consensus 202 ----~~~~-l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~--~~~l~~L~~L~L~~N-~l~~~~~~ 273 (440)
T 3zyj_A 202 ----NLTP-LIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNA--FDNLQSLVEINLAHN-NLTLLPHD 273 (440)
T ss_dssp ----CCTT-CSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTS--STTCTTCCEEECTTS-CCCCCCTT
T ss_pred ----ccCC-CcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhh--hcCCCCCCEEECCCC-CCCccChh
Confidence 2344 555555555555554444445555555555555555544332222 344555555555553 3333332
Q ss_pred ccccccccceEEeecCC
Q 037018 610 GAGAMPKLESLIVNPCA 626 (663)
Q Consensus 610 ~~~~l~~L~~L~l~~c~ 626 (663)
.+..+++|+.|++++|+
T Consensus 274 ~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 274 LFTPLHHLERIHLHHNP 290 (440)
T ss_dssp TTSSCTTCCEEECCSSC
T ss_pred HhccccCCCEEEcCCCC
Confidence 23445555555555544
No 57
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.86 E-value=1.1e-20 Score=204.46 Aligned_cols=219 Identities=21% Similarity=0.193 Sum_probs=106.5
Q ss_pred CcccEEEecCCcCccc-CccCCCCCCcCeEeccCCCCccch-hhhcccccccEeeccCCcccccchh-hhcCcCCcEEEc
Q 037018 372 KHLRVLNLGSAILYQY-PPGLENLFHLKYLKLNIPSLNCLP-SLLCTLLNLQTLEMPASYIDHSPEG-IWMMQKLMHLNF 448 (663)
Q Consensus 372 ~~Lr~L~L~~~~l~~l-p~~~~~l~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~l~~lp~~-l~~l~~L~~L~l 448 (663)
++|++|++++|.++.+ |..|.++++|++|+|++|.+..++ ..+.++++|++|++++|.+..+|.. +..+++|++|++
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 154 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL 154 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence 4556666666655533 344555566666666665555443 4455555666666666555555443 455556666666
Q ss_pred cCCCCCCCCCCCcCCCCCCcEeeCcCCC--CCCh-hhcCCCCCccEEEeecCCCccccchhhhhcCCCCCCEEEEeecCc
Q 037018 449 GSINLPAPPKNYSSSLKNLIFISSLNPS--SCTP-DILGRLPNVQTLRISGDLSHYHSGVSKSLCELHKLECLQLVHEGR 525 (663)
Q Consensus 449 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~--~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 525 (663)
++|.+....+..+..+++|+.|++.++. ..++ ..+..+++|+.|++++|. . ..++ .+..+++|+.|++++ +.
T Consensus 155 ~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~--l-~~~~-~~~~l~~L~~L~Ls~-N~ 229 (452)
T 3zyi_A 155 RNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCN--I-KDMP-NLTPLVGLEELEMSG-NH 229 (452)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSC--C-SSCC-CCTTCTTCCEEECTT-SC
T ss_pred CCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCc--c-cccc-cccccccccEEECcC-Cc
Confidence 5333332222344555555555555533 2222 234455555555555542 1 1121 234445555555554 44
Q ss_pred cccc-cccccccccCCCCceEEEEecccCCCCChhhhcCCCCCcEEEeecCCCCCceeeecCCCCCCcccEEEccCC
Q 037018 526 MWQL-SRMVLSEYQFPPCLTQLSLSNTQLMEDPMPALEKLPHLEVLKLKQNSYSERKLACVGSGSFPQLKILHLKSM 601 (663)
Q Consensus 526 l~~l-p~~~~~l~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~ 601 (663)
+..+ |. .+.. +++|+.|++++|.+....+..+.++++|+.|+|++|.+....... +..+++|+.|+|++|
T Consensus 230 l~~~~~~---~~~~-l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~--~~~l~~L~~L~L~~N 300 (452)
T 3zyi_A 230 FPEIRPG---SFHG-LSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDL--FTPLRYLVELHLHHN 300 (452)
T ss_dssp CSEECGG---GGTT-CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTS--STTCTTCCEEECCSS
T ss_pred CcccCcc---cccC-ccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHH--hccccCCCEEEccCC
Confidence 4433 22 3444 555555555555544444444555555555555555444322221 344455555555543
No 58
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.85 E-value=4.1e-20 Score=205.78 Aligned_cols=256 Identities=16% Similarity=0.050 Sum_probs=128.5
Q ss_pred eeEEEEEecccccccccccCCCcccEEEeecCccccccccchhHHhcCCCcccEEEecCCcCcccCccCCCCCCcCeEec
Q 037018 323 VKRCFILEDLIDEFISLEHSDMYLQSFLNHTLESDRLALIDCENFCKKFKHLRVLNLGSAILYQYPPGLENLFHLKYLKL 402 (663)
Q Consensus 323 ~r~lsi~~~~~~~~~~~~~~~~~lr~L~l~~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~l~~lp~~~~~l~~L~~L~L 402 (663)
++.+.+..+.+..++ ....++++.|.+.++... .++. .+++|++|++++|.++.+|. .+++|++|++
T Consensus 42 l~~L~ls~n~L~~lp--~~l~~~L~~L~L~~N~l~-----~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~L 108 (622)
T 3g06_A 42 NAVLNVGESGLTTLP--DCLPAHITTLVIPDNNLT-----SLPA---LPPELRTLEVSGNQLTSLPV---LPPGLLELSI 108 (622)
T ss_dssp CCEEECCSSCCSCCC--SCCCTTCSEEEECSCCCS-----CCCC---CCTTCCEEEECSCCCSCCCC---CCTTCCEEEE
T ss_pred CcEEEecCCCcCccC--hhhCCCCcEEEecCCCCC-----CCCC---cCCCCCEEEcCCCcCCcCCC---CCCCCCEEEC
Confidence 455555555544444 222455666666655443 1221 34556666666666555554 4456666666
Q ss_pred cCCCCccchhhhcccccccEeeccCCcccccchhhhcCcCCcEEEccCCCCCCCCCCCcCCCCCCcEeeCcCCC-CCChh
Q 037018 403 NIPSLNCLPSLLCTLLNLQTLEMPASYIDHSPEGIWMMQKLMHLNFGSINLPAPPKNYSSSLKNLIFISSLNPS-SCTPD 481 (663)
Q Consensus 403 ~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~ 481 (663)
++|.++.+|. .+.+|+.|++++|.+..+|.. +++|++|+++ +|....+|. .+++|+.|++.+|. ..++
T Consensus 109 s~N~l~~l~~---~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls-~N~l~~l~~---~~~~L~~L~L~~N~l~~l~- 177 (622)
T 3g06_A 109 FSNPLTHLPA---LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVS-DNQLASLPA---LPSELCKLWAYNNQLTSLP- 177 (622)
T ss_dssp CSCCCCCCCC---CCTTCCEEECCSSCCSCCCCC---CTTCCEEECC-SSCCSCCCC---CCTTCCEEECCSSCCSCCC-
T ss_pred cCCcCCCCCC---CCCCcCEEECCCCCCCcCCCC---CCCCCEEECc-CCcCCCcCC---ccCCCCEEECCCCCCCCCc-
Confidence 6666655554 345566666666655555542 3556666665 333333332 22445555555555 3333
Q ss_pred hcCCCCCccEEEeecCCCccccchhhhhcCCCCCCEEEEeecCccccccccccccccCCCCceEEEEecccCCCCChhhh
Q 037018 482 ILGRLPNVQTLRISGDLSHYHSGVSKSLCELHKLECLQLVHEGRMWQLSRMVLSEYQFPPCLTQLSLSNTQLMEDPMPAL 561 (663)
Q Consensus 482 ~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~lp~~~~~l~~~l~~L~~L~L~~~~l~~~~~~~l 561 (663)
..+++|+.|++++|. ...++. .+++|+.|++++ +.++.+|. . +++|+.|++++|.++...
T Consensus 178 --~~~~~L~~L~Ls~N~---l~~l~~---~~~~L~~L~L~~-N~l~~l~~---~----~~~L~~L~Ls~N~L~~lp---- 237 (622)
T 3g06_A 178 --MLPSGLQELSVSDNQ---LASLPT---LPSELYKLWAYN-NRLTSLPA---L----PSGLKELIVSGNRLTSLP---- 237 (622)
T ss_dssp --CCCTTCCEEECCSSC---CSCCCC---CCTTCCEEECCS-SCCSSCCC---C----CTTCCEEECCSSCCSCCC----
T ss_pred --ccCCCCcEEECCCCC---CCCCCC---ccchhhEEECcC-CcccccCC---C----CCCCCEEEccCCccCcCC----
Confidence 334555555555552 112222 234555555554 45555553 1 345555555555544311
Q ss_pred cCCCCCcEEEeecCCCCCceeeecCCCCCCcccEEEccCCCCccccccccccccccceEEeecCCCCC
Q 037018 562 EKLPHLEVLKLKQNSYSERKLACVGSGSFPQLKILHLKSMLWLEEWTMGAGAMPKLESLIVNPCAYLR 629 (663)
Q Consensus 562 ~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~ 629 (663)
..+++|+.|++++|.+.... ..+++|+.|+|++| .+..+|..+.++++|+.|++++|+...
T Consensus 238 ~~l~~L~~L~Ls~N~L~~lp------~~~~~L~~L~Ls~N-~L~~lp~~l~~l~~L~~L~L~~N~l~~ 298 (622)
T 3g06_A 238 VLPSELKELMVSGNRLTSLP------MLPSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGNPLSE 298 (622)
T ss_dssp CCCTTCCEEECCSSCCSCCC------CCCTTCCEEECCSS-CCCSCCGGGGGSCTTCEEECCSCCCCH
T ss_pred CCCCcCcEEECCCCCCCcCC------cccccCcEEeCCCC-CCCcCCHHHhhccccCEEEecCCCCCC
Confidence 34455555555555544211 13445555555553 344555555555555555555555443
No 59
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.85 E-value=3.3e-23 Score=225.14 Aligned_cols=269 Identities=18% Similarity=0.130 Sum_probs=126.0
Q ss_pred cccEEEecCCcCc-----ccCccCCCCCCcCeEeccCCCCccc-hhhhc-----ccccccEeeccCCcccc-----cchh
Q 037018 373 HLRVLNLGSAILY-----QYPPGLENLFHLKYLKLNIPSLNCL-PSLLC-----TLLNLQTLEMPASYIDH-----SPEG 436 (663)
Q Consensus 373 ~Lr~L~L~~~~l~-----~lp~~~~~l~~L~~L~L~~~~i~~l-p~~i~-----~L~~L~~L~L~~~~l~~-----lp~~ 436 (663)
+|++|++++|.++ .++..+..+++|++|++++|.+... +..+. ...+|++|++++|.+.. ++..
T Consensus 86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 165 (461)
T 1z7x_W 86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASV 165 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHH
T ss_pred ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHH
Confidence 4555555555544 2344455555555555555554411 11111 12345555555554332 2333
Q ss_pred hhcCcCCcEEEccCCCCCCCCCCCcC-----CCCCCcEeeCcCCC-CC-----ChhhcCCCCCccEEEeecCCCccccch
Q 037018 437 IWMMQKLMHLNFGSINLPAPPKNYSS-----SLKNLIFISSLNPS-SC-----TPDILGRLPNVQTLRISGDLSHYHSGV 505 (663)
Q Consensus 437 l~~l~~L~~L~l~~~~~~~~~~~~l~-----~l~~L~~L~l~~~~-~~-----~~~~l~~l~~L~~L~l~~~~~~~~~~~ 505 (663)
+..+++|++|++++|.+....+..+. ..++|+.|++.+|. .. ++..+..+++|++|++++|. .....
T Consensus 166 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~--l~~~~ 243 (461)
T 1z7x_W 166 LRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNK--LGDVG 243 (461)
T ss_dssp HHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSB--CHHHH
T ss_pred HhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCc--CChHH
Confidence 44455555555553322111111111 13355555555554 11 24444455566666665552 22111
Q ss_pred ----hh-hhcCCCCCCEEEEeecCcccc-----ccccccccccCCCCceEEEEecccCCCCChhhhc-----CCCCCcEE
Q 037018 506 ----SK-SLCELHKLECLQLVHEGRMWQ-----LSRMVLSEYQFPPCLTQLSLSNTQLMEDPMPALE-----KLPHLEVL 570 (663)
Q Consensus 506 ----~~-~l~~l~~L~~L~l~~~~~l~~-----lp~~~~~l~~~l~~L~~L~L~~~~l~~~~~~~l~-----~l~~L~~L 570 (663)
.. ....+++|++|++++ +.++. ++. .+.. +++|+.|++++|.+.+..+..+. ..++|+.|
T Consensus 244 ~~~l~~~~~~~~~~L~~L~L~~-n~l~~~~~~~l~~---~l~~-~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L 318 (461)
T 1z7x_W 244 MAELCPGLLHPSSRLRTLWIWE-CGITAKGCGDLCR---VLRA-KESLKELSLAGNELGDEGARLLCETLLEPGCQLESL 318 (461)
T ss_dssp HHHHHHHHTSTTCCCCEEECTT-SCCCHHHHHHHHH---HHHH-CTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEE
T ss_pred HHHHHHHHhcCCCCceEEECcC-CCCCHHHHHHHHH---HHhh-CCCcceEECCCCCCchHHHHHHHHHhccCCccceee
Confidence 11 112345566666654 34443 444 4444 55566666665554332222222 12456666
Q ss_pred EeecCCCCCcee---eecCCCCCCcccEEEccCCCCcccc-ccccc-----cccccceEEeecCCCCC----CCccccCC
Q 037018 571 KLKQNSYSERKL---ACVGSGSFPQLKILHLKSMLWLEEW-TMGAG-----AMPKLESLIVNPCAYLR----KLPEELWC 637 (663)
Q Consensus 571 ~L~~~~~~~~~~---~~~~~~~~~~L~~L~L~~~~~l~~l-~~~~~-----~l~~L~~L~l~~c~~l~----~l~~~l~~ 637 (663)
++++|.+.+... ... +..+++|+.|+|++|. +... +..+. ..++|++|++++|.... .+|..+..
T Consensus 319 ~L~~n~l~~~~~~~l~~~-l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~ 396 (461)
T 1z7x_W 319 WVKSCSFTAACCSHFSSV-LAQNRFLLELQISNNR-LEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLA 396 (461)
T ss_dssp ECTTSCCBGGGHHHHHHH-HHHCSSCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHH
T ss_pred EcCCCCCchHHHHHHHHH-HhhCCCccEEEccCCc-cccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHh
Confidence 665555544321 111 2345666677766653 3321 11111 15577777777776443 45666666
Q ss_pred CCCCCEEEecCCC
Q 037018 638 IKSLCKLELHWPQ 650 (663)
Q Consensus 638 l~sL~~L~l~~c~ 650 (663)
+++|++|++++|+
T Consensus 397 ~~~L~~L~l~~N~ 409 (461)
T 1z7x_W 397 NHSLRELDLSNNC 409 (461)
T ss_dssp CCCCCEEECCSSS
T ss_pred CCCccEEECCCCC
Confidence 7777777777766
No 60
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.85 E-value=2.1e-20 Score=202.41 Aligned_cols=241 Identities=17% Similarity=0.121 Sum_probs=164.2
Q ss_pred cccEEEecCCcCcccCccCCCCCCcCeEeccCCCCccc-hhhhcccccccEeeccCCcccccc-hhhhcCcCCcEEEccC
Q 037018 373 HLRVLNLGSAILYQYPPGLENLFHLKYLKLNIPSLNCL-PSLLCTLLNLQTLEMPASYIDHSP-EGIWMMQKLMHLNFGS 450 (663)
Q Consensus 373 ~Lr~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~l~~lp-~~l~~l~~L~~L~l~~ 450 (663)
..+.++.++..++.+|..+. ++|++|+|++|.++.+ |..++++++|++|++++|.+..++ ..+..+++|++|++++
T Consensus 55 ~~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~ 132 (452)
T 3zyi_A 55 QFSKVVCTRRGLSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD 132 (452)
T ss_dssp SSCEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CCcEEEECCCCcCccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence 35678888888888887664 6899999999999876 567889999999999999887775 5688899999999995
Q ss_pred CCCCCCCCCCcCCCCCCcEeeCcCCC-CCCh-hhcCCCCCccEEEeecCCCccccchh-hhhcCCCCCCEEEEeecCccc
Q 037018 451 INLPAPPKNYSSSLKNLIFISSLNPS-SCTP-DILGRLPNVQTLRISGDLSHYHSGVS-KSLCELHKLECLQLVHEGRMW 527 (663)
Q Consensus 451 ~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~l~ 527 (663)
|.+....+..+..+++|++|+++++. ..++ ..+..+++|+.|+++++. ....++ ..+..+++|+.|++++ +.++
T Consensus 133 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~--~l~~i~~~~~~~l~~L~~L~L~~-n~l~ 209 (452)
T 3zyi_A 133 NWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELK--KLEYISEGAFEGLFNLKYLNLGM-CNIK 209 (452)
T ss_dssp SCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCT--TCCEECTTTTTTCTTCCEEECTT-SCCS
T ss_pred CcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCC--CccccChhhccCCCCCCEEECCC-Cccc
Confidence 54444444457778888888888776 3333 356677777777777752 323332 2456667777777775 6666
Q ss_pred cccccccccccCCCCceEEEEecccCCCCChhhhcCCCCCcEEEeecCCCCCceeeecCCCCCCcccEEEccCCCCcccc
Q 037018 528 QLSRMVLSEYQFPPCLTQLSLSNTQLMEDPMPALEKLPHLEVLKLKQNSYSERKLACVGSGSFPQLKILHLKSMLWLEEW 607 (663)
Q Consensus 528 ~lp~~~~~l~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l 607 (663)
.+| .+.. +++|+.|++++|.+....+..+.++++|+.|++++|.+.+..+.. +..+++|+.|+|++| .+..+
T Consensus 210 ~~~----~~~~-l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~--~~~l~~L~~L~L~~N-~l~~~ 281 (452)
T 3zyi_A 210 DMP----NLTP-LVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNA--FDGLASLVELNLAHN-NLSSL 281 (452)
T ss_dssp SCC----CCTT-CTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTT--TTTCTTCCEEECCSS-CCSCC
T ss_pred ccc----cccc-cccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHH--hcCCCCCCEEECCCC-cCCcc
Confidence 665 3555 667777777777766666666667777777777766665433322 455666666666664 44444
Q ss_pred cc-ccccccccceEEeecCC
Q 037018 608 TM-GAGAMPKLESLIVNPCA 626 (663)
Q Consensus 608 ~~-~~~~l~~L~~L~l~~c~ 626 (663)
+. .+..+++|+.|++++|+
T Consensus 282 ~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 282 PHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp CTTSSTTCTTCCEEECCSSC
T ss_pred ChHHhccccCCCEEEccCCC
Confidence 43 34556666666666665
No 61
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.84 E-value=3.4e-20 Score=200.00 Aligned_cols=244 Identities=16% Similarity=0.105 Sum_probs=200.7
Q ss_pred CcCeEeccCCCCccchhhhcccccccEeeccCCcccccc-hhhhcCcCCcEEEccCCCCCCCCCCCcCCCCCCcEeeCcC
Q 037018 396 HLKYLKLNIPSLNCLPSLLCTLLNLQTLEMPASYIDHSP-EGIWMMQKLMHLNFGSINLPAPPKNYSSSLKNLIFISSLN 474 (663)
Q Consensus 396 ~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp-~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 474 (663)
..+.++.++..++.+|..+. .+++.|++++|.+..++ ..+..+++|++|++++|.+....+..+..+++|++|++++
T Consensus 44 ~~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~ 121 (440)
T 3zyj_A 44 QFSKVICVRKNLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD 121 (440)
T ss_dssp TSCEEECCSCCCSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS
T ss_pred CCCEEEeCCCCcCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC
Confidence 46788889999999998765 78999999999888876 5689999999999996655555567789999999999999
Q ss_pred CC-CCCh-hhcCCCCCccEEEeecCCCccccchhhhhcCCCCCCEEEEeecCccccccccccccccCCCCceEEEEeccc
Q 037018 475 PS-SCTP-DILGRLPNVQTLRISGDLSHYHSGVSKSLCELHKLECLQLVHEGRMWQLSRMVLSEYQFPPCLTQLSLSNTQ 552 (663)
Q Consensus 475 ~~-~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~lp~~~~~l~~~l~~L~~L~L~~~~ 552 (663)
+. ..++ ..+..+++|+.|++++| ......+..+..+++|++|++++++.+..++.. .+.. +++|+.|++++|.
T Consensus 122 n~l~~~~~~~~~~l~~L~~L~L~~N--~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~--~~~~-l~~L~~L~L~~n~ 196 (440)
T 3zyj_A 122 NRLTTIPNGAFVYLSKLKELWLRNN--PIESIPSYAFNRIPSLRRLDLGELKRLSYISEG--AFEG-LSNLRYLNLAMCN 196 (440)
T ss_dssp SCCSSCCTTTSCSCSSCCEEECCSC--CCCEECTTTTTTCTTCCEEECCCCTTCCEECTT--TTTT-CSSCCEEECTTSC
T ss_pred CcCCeeCHhHhhccccCceeeCCCC--cccccCHHHhhhCcccCEeCCCCCCCcceeCcc--hhhc-ccccCeecCCCCc
Confidence 98 4444 46899999999999999 354444557889999999999987888877752 4666 9999999999999
Q ss_pred CCCCChhhhcCCCCCcEEEeecCCCCCceeeecCCCCCCcccEEEccCCCCccccccccccccccceEEeecCCCCCCCc
Q 037018 553 LMEDPMPALEKLPHLEVLKLKQNSYSERKLACVGSGSFPQLKILHLKSMLWLEEWTMGAGAMPKLESLIVNPCAYLRKLP 632 (663)
Q Consensus 553 l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~ 632 (663)
+... +.+..+++|+.|+|++|.+.+..+.. +..+++|+.|+|++|..-...+..+..+++|+.|++++|......+
T Consensus 197 l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~--~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 272 (440)
T 3zyj_A 197 LREI--PNLTPLIKLDELDLSGNHLSAIRPGS--FQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPH 272 (440)
T ss_dssp CSSC--CCCTTCSSCCEEECTTSCCCEECTTT--TTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCT
T ss_pred Cccc--cccCCCcccCEEECCCCccCccChhh--hccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccCh
Confidence 8643 36889999999999999887654433 6889999999999964333445678899999999999997655444
Q ss_pred cccCCCCCCCEEEecCCC
Q 037018 633 EELWCIKSLCKLELHWPQ 650 (663)
Q Consensus 633 ~~l~~l~sL~~L~l~~c~ 650 (663)
..+..+++|+.|+++++|
T Consensus 273 ~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 273 DLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp TTTSSCTTCCEEECCSSC
T ss_pred hHhccccCCCEEEcCCCC
Confidence 567889999999999976
No 62
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.84 E-value=1.7e-21 Score=200.58 Aligned_cols=247 Identities=16% Similarity=0.098 Sum_probs=198.8
Q ss_pred hHHhcCCCcccEEEecCCcCcccC-ccCCCCCCcCeEeccCCCCccchhhhcccccccEeeccCCcccccchhhhcCcCC
Q 037018 365 ENFCKKFKHLRVLNLGSAILYQYP-PGLENLFHLKYLKLNIPSLNCLPSLLCTLLNLQTLEMPASYIDHSPEGIWMMQKL 443 (663)
Q Consensus 365 ~~~~~~l~~Lr~L~L~~~~l~~lp-~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~l~~l~~L 443 (663)
..++..+++|++|++++|.++.++ ..++.+++|++|++++|.+..++. ++.+++|++|++++|.+..++ ..++|
T Consensus 27 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~l~----~~~~L 101 (317)
T 3o53_A 27 ASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELL----VGPSI 101 (317)
T ss_dssp HHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEEEEE----ECTTC
T ss_pred HHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCcccccc----CCCCc
Confidence 456688889999999999998665 578999999999999999987765 889999999999999888776 34899
Q ss_pred cEEEccCCCCCCCCCCCcCCCCCCcEeeCcCCC-CCC-hhhcCCCCCccEEEeecCCCccccchhhhh-cCCCCCCEEEE
Q 037018 444 MHLNFGSINLPAPPKNYSSSLKNLIFISSLNPS-SCT-PDILGRLPNVQTLRISGDLSHYHSGVSKSL-CELHKLECLQL 520 (663)
Q Consensus 444 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l-~~l~~L~~L~l 520 (663)
++|++++|.+.. ++. ..+++|++|+++++. ... +..++.+++|+.|++++| ......+..+ ..+++|++|++
T Consensus 102 ~~L~l~~n~l~~-~~~--~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N--~l~~~~~~~~~~~l~~L~~L~L 176 (317)
T 3o53_A 102 ETLHAANNNISR-VSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLN--EIDTVNFAELAASSDTLEHLNL 176 (317)
T ss_dssp CEEECCSSCCSE-EEE--CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTS--CCCEEEGGGGGGGTTTCCEEEC
T ss_pred CEEECCCCccCC-cCc--cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCC--CCCcccHHHHhhccCcCCEEEC
Confidence 999999554433 332 236789999999998 444 446788999999999998 3544445554 47899999999
Q ss_pred eecCccccccccccccccCCCCceEEEEecccCCCCChhhhcCCCCCcEEEeecCCCCCceeeecCCCCCCcccEEEccC
Q 037018 521 VHEGRMWQLSRMVLSEYQFPPCLTQLSLSNTQLMEDPMPALEKLPHLEVLKLKQNSYSERKLACVGSGSFPQLKILHLKS 600 (663)
Q Consensus 521 ~~~~~l~~lp~~~~~l~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~ 600 (663)
++ +.++.+|. ... +++|+.|++++|.+.... ..+..+++|+.|++++|.+... + .. +..+++|+.|++++
T Consensus 177 ~~-N~l~~~~~----~~~-l~~L~~L~Ls~N~l~~l~-~~~~~l~~L~~L~L~~N~l~~l-~-~~-~~~l~~L~~L~l~~ 246 (317)
T 3o53_A 177 QY-NFIYDVKG----QVV-FAKLKTLDLSSNKLAFMG-PEFQSAAGVTWISLRNNKLVLI-E-KA-LRFSQNLEHFDLRG 246 (317)
T ss_dssp TT-SCCCEEEC----CCC-CTTCCEEECCSSCCCEEC-GGGGGGTTCSEEECTTSCCCEE-C-TT-CCCCTTCCEEECTT
T ss_pred CC-CcCccccc----ccc-cccCCEEECCCCcCCcch-hhhcccCcccEEECcCCcccch-h-hH-hhcCCCCCEEEccC
Confidence 97 88888874 445 899999999999987543 4588999999999999988742 2 22 57889999999999
Q ss_pred CCCc-cccccccccccccceEEeecCCCCCCC
Q 037018 601 MLWL-EEWTMGAGAMPKLESLIVNPCAYLRKL 631 (663)
Q Consensus 601 ~~~l-~~l~~~~~~l~~L~~L~l~~c~~l~~l 631 (663)
|+.. ..++..+..+++|+.|++.+|..++..
T Consensus 247 N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~ 278 (317)
T 3o53_A 247 NGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQ 278 (317)
T ss_dssp CCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSS
T ss_pred CCccCcCHHHHHhccccceEEECCCchhccCC
Confidence 7655 467778889999999999988766543
No 63
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.83 E-value=9.4e-20 Score=202.85 Aligned_cols=256 Identities=18% Similarity=0.098 Sum_probs=205.7
Q ss_pred CCcccEEEeecCccccccccchhHHhcCCCcccEEEecCCcCcccCccCCCCCCcCeEeccCCCCccchhhhcccccccE
Q 037018 343 DMYLQSFLNHTLESDRLALIDCENFCKKFKHLRVLNLGSAILYQYPPGLENLFHLKYLKLNIPSLNCLPSLLCTLLNLQT 422 (663)
Q Consensus 343 ~~~lr~L~l~~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~ 422 (663)
..+++.|.+.++... .++.. -.++|++|++++|.++.+|. .+++|++|++++|.++.+|. .+++|++
T Consensus 39 ~~~l~~L~ls~n~L~-----~lp~~--l~~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~ 105 (622)
T 3g06_A 39 NNGNAVLNVGESGLT-----TLPDC--LPAHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLPV---LPPGLLE 105 (622)
T ss_dssp HHCCCEEECCSSCCS-----CCCSC--CCTTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCSCCCC---CCTTCCE
T ss_pred CCCCcEEEecCCCcC-----ccChh--hCCCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCCcCCC---CCCCCCE
Confidence 346888998888765 33322 12799999999999998887 57899999999999999986 6899999
Q ss_pred eeccCCcccccchhhhcCcCCcEEEccCCCCCCCCCCCcCCCCCCcEeeCcCCC-CCChhhcCCCCCccEEEeecCCCcc
Q 037018 423 LEMPASYIDHSPEGIWMMQKLMHLNFGSINLPAPPKNYSSSLKNLIFISSLNPS-SCTPDILGRLPNVQTLRISGDLSHY 501 (663)
Q Consensus 423 L~L~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~ 501 (663)
|++++|.+..+|. .+++|+.|+++ +|....+|.. +++|++|++++|. ..++. .+++|+.|++++|.
T Consensus 106 L~Ls~N~l~~l~~---~l~~L~~L~L~-~N~l~~lp~~---l~~L~~L~Ls~N~l~~l~~---~~~~L~~L~L~~N~--- 172 (622)
T 3g06_A 106 LSIFSNPLTHLPA---LPSGLCKLWIF-GNQLTSLPVL---PPGLQELSVSDNQLASLPA---LPSELCKLWAYNNQ--- 172 (622)
T ss_dssp EEECSCCCCCCCC---CCTTCCEEECC-SSCCSCCCCC---CTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSC---
T ss_pred EECcCCcCCCCCC---CCCCcCEEECC-CCCCCcCCCC---CCCCCEEECcCCcCCCcCC---ccCCCCEEECCCCC---
Confidence 9999999988887 67899999999 5555556654 4889999999987 44443 45789999999983
Q ss_pred ccchhhhhcCCCCCCEEEEeecCccccccccccccccCCCCceEEEEecccCCCCChhhhcCCCCCcEEEeecCCCCCce
Q 037018 502 HSGVSKSLCELHKLECLQLVHEGRMWQLSRMVLSEYQFPPCLTQLSLSNTQLMEDPMPALEKLPHLEVLKLKQNSYSERK 581 (663)
Q Consensus 502 ~~~~~~~l~~l~~L~~L~l~~~~~l~~lp~~~~~l~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~ 581 (663)
...++ ..+++|+.|++++ +.++.+|. . +++|+.|++++|.++... ..+++|+.|++++|.+++..
T Consensus 173 l~~l~---~~~~~L~~L~Ls~-N~l~~l~~---~----~~~L~~L~L~~N~l~~l~----~~~~~L~~L~Ls~N~L~~lp 237 (622)
T 3g06_A 173 LTSLP---MLPSGLQELSVSD-NQLASLPT---L----PSELYKLWAYNNRLTSLP----ALPSGLKELIVSGNRLTSLP 237 (622)
T ss_dssp CSCCC---CCCTTCCEEECCS-SCCSCCCC---C----CTTCCEEECCSSCCSSCC----CCCTTCCEEECCSSCCSCCC
T ss_pred CCCCc---ccCCCCcEEECCC-CCCCCCCC---c----cchhhEEECcCCcccccC----CCCCCCCEEEccCCccCcCC
Confidence 33344 4578999999997 88888886 2 678999999999876432 23589999999999887622
Q ss_pred eeecCCCCCCcccEEEccCCCCccccccccccccccceEEeecCCCCCCCccccCCCCCCCEEEecCCC
Q 037018 582 LACVGSGSFPQLKILHLKSMLWLEEWTMGAGAMPKLESLIVNPCAYLRKLPEELWCIKSLCKLELHWPQ 650 (663)
Q Consensus 582 ~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~l~~l~sL~~L~l~~c~ 650 (663)
..+++|+.|+|++| .+..+|. .+++|+.|++++|.. +.+|..+.++++|+.|++++|+
T Consensus 238 ------~~l~~L~~L~Ls~N-~L~~lp~---~~~~L~~L~Ls~N~L-~~lp~~l~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 238 ------VLPSELKELMVSGN-RLTSLPM---LPSGLLSLSVYRNQL-TRLPESLIHLSSETTVNLEGNP 295 (622)
T ss_dssp ------CCCTTCCEEECCSS-CCSCCCC---CCTTCCEEECCSSCC-CSCCGGGGGSCTTCEEECCSCC
T ss_pred ------CCCCcCcEEECCCC-CCCcCCc---ccccCcEEeCCCCCC-CcCCHHHhhccccCEEEecCCC
Confidence 45789999999996 6778876 678999999999964 4789889999999999999988
No 64
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.83 E-value=3.2e-20 Score=188.04 Aligned_cols=245 Identities=18% Similarity=0.188 Sum_probs=185.6
Q ss_pred CCcccEEEecCCcCcccC-ccCCCCCCcCeEeccCCCCccc-hhhhcccccccEeeccCCc-cccc-chhhhcCcCCcEE
Q 037018 371 FKHLRVLNLGSAILYQYP-PGLENLFHLKYLKLNIPSLNCL-PSLLCTLLNLQTLEMPASY-IDHS-PEGIWMMQKLMHL 446 (663)
Q Consensus 371 l~~Lr~L~L~~~~l~~lp-~~~~~l~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~-l~~l-p~~l~~l~~L~~L 446 (663)
.++|++|+++++.++.++ ..+..+++|++|++++|.++.+ |..++.+++|++|++++|. +..+ |..+..+++|++|
T Consensus 31 ~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L 110 (285)
T 1ozn_A 31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL 110 (285)
T ss_dssp CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEE
Confidence 568999999999988665 4688999999999999999877 6788899999999999995 8877 5668889999999
Q ss_pred EccCCCCCCCCCCCcCCCCCCcEeeCcCCC-CCCh-hhcCCCCCccEEEeecCCCccccchhhhhcCCCCCCEEEEeecC
Q 037018 447 NFGSINLPAPPKNYSSSLKNLIFISSLNPS-SCTP-DILGRLPNVQTLRISGDLSHYHSGVSKSLCELHKLECLQLVHEG 524 (663)
Q Consensus 447 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 524 (663)
++++|.+....|..+..+++|++|++.++. ...+ ..++.+++|+.|++++| ......+..+..+++|+.|++++ +
T Consensus 111 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n--~l~~~~~~~~~~l~~L~~L~l~~-n 187 (285)
T 1ozn_A 111 HLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGN--RISSVPERAFRGLHSLDRLLLHQ-N 187 (285)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS--CCCEECTTTTTTCTTCCEEECCS-S
T ss_pred ECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCC--cccccCHHHhcCccccCEEECCC-C
Confidence 999665566667778899999999999988 4444 45889999999999998 34444444688899999999997 7
Q ss_pred ccccc-cccccccccCCCCceEEEEecccCCCCChhhhcCCCCCcEEEeecCCCCCceeeecCCCCCCcccEEEccCCCC
Q 037018 525 RMWQL-SRMVLSEYQFPPCLTQLSLSNTQLMEDPMPALEKLPHLEVLKLKQNSYSERKLACVGSGSFPQLKILHLKSMLW 603 (663)
Q Consensus 525 ~l~~l-p~~~~~l~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~ 603 (663)
.+..+ |. .+.. +++|+.|++++|.+....+..+..+++|+.|++++|.+........ -...|+.+....+..
T Consensus 188 ~l~~~~~~---~~~~-l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~---~~~~l~~~~~~~~~~ 260 (285)
T 1ozn_A 188 RVAHVHPH---AFRD-LGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARP---LWAWLQKFRGSSSEV 260 (285)
T ss_dssp CCCEECTT---TTTT-CTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGHH---HHHHHHHCCSEECCC
T ss_pred cccccCHh---HccC-cccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcHH---HHHHHHhcccccCcc
Confidence 77765 66 7778 9999999999999988777889999999999999998764322110 112233333443222
Q ss_pred ccccccccc--cccccceEEeecC
Q 037018 604 LEEWTMGAG--AMPKLESLIVNPC 625 (663)
Q Consensus 604 l~~l~~~~~--~l~~L~~L~l~~c 625 (663)
.-..|..+. .+..+...++.+|
T Consensus 261 ~c~~p~~l~g~~l~~l~~~~l~~C 284 (285)
T 1ozn_A 261 PCSLPQRLAGRDLKRLAANDLQGC 284 (285)
T ss_dssp BEEESGGGTTCBGGGSCGGGSCCC
T ss_pred ccCCchHhCCcChhhcCHHHhccC
Confidence 224444332 3455666666666
No 65
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.83 E-value=6.6e-20 Score=207.20 Aligned_cols=297 Identities=17% Similarity=0.131 Sum_probs=201.5
Q ss_pred CCCceeEEEEEecccccccccccC-CCcccEEEeecCccccccccch-hHHhcCCCcccEEEecCCcCcccCc-cCCCCC
Q 037018 319 TLANVKRCFILEDLIDEFISLEHS-DMYLQSFLNHTLESDRLALIDC-ENFCKKFKHLRVLNLGSAILYQYPP-GLENLF 395 (663)
Q Consensus 319 ~~~~~r~lsi~~~~~~~~~~~~~~-~~~lr~L~l~~~~~~~~~~~~l-~~~~~~l~~Lr~L~L~~~~l~~lp~-~~~~l~ 395 (663)
...++++|.+..+.+..++..... .++|++|.+.++... .+ +..|..+++|++|++++|.++.+|. .|++++
T Consensus 74 ~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~-----~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~ 148 (635)
T 4g8a_A 74 SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-----SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLK 148 (635)
T ss_dssp TCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC-----EECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCT
T ss_pred CCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCC-----CCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCc
Confidence 456788888888887777633333 788999999988765 23 3444889999999999999887765 488899
Q ss_pred CcCeEeccCCCCc--cchhhhcccccccEeeccCCcccccch-hhhcC--------------------------------
Q 037018 396 HLKYLKLNIPSLN--CLPSLLCTLLNLQTLEMPASYIDHSPE-GIWMM-------------------------------- 440 (663)
Q Consensus 396 ~L~~L~L~~~~i~--~lp~~i~~L~~L~~L~L~~~~l~~lp~-~l~~l-------------------------------- 440 (663)
+|++|++++|.+. .+|..++.+++|++|++++|.+..++. .+..+
T Consensus 149 ~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~ 228 (635)
T 4g8a_A 149 TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHK 228 (635)
T ss_dssp TCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEE
T ss_pred ccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCcccccchhhhh
Confidence 9999999999887 457788888999999988876544321 11111
Q ss_pred --------------------------------------------------------------------------------
Q 037018 441 -------------------------------------------------------------------------------- 440 (663)
Q Consensus 441 -------------------------------------------------------------------------------- 440 (663)
T Consensus 229 l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l 308 (635)
T 4g8a_A 229 LTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNV 308 (635)
T ss_dssp EEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTC
T ss_pred hhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhccc
Confidence
Q ss_pred -------------------cCCcEEEccCCCCCCC-------------------CCCCcCCCCCCcEeeCcCCC----CC
Q 037018 441 -------------------QKLMHLNFGSINLPAP-------------------PKNYSSSLKNLIFISSLNPS----SC 478 (663)
Q Consensus 441 -------------------~~L~~L~l~~~~~~~~-------------------~~~~l~~l~~L~~L~l~~~~----~~ 478 (663)
.+|+.|++.++..... .+.....+++|+.|+++.+. ..
T Consensus 309 ~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~ 388 (635)
T 4g8a_A 309 SSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGC 388 (635)
T ss_dssp SEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEE
T ss_pred ccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccccccccccchhhccccccccc
Confidence 1122222221110000 00111235566666665543 00
Q ss_pred -----------------------Chh-------------------------hcCCCCCccEEEeecCCCccccchhhhhc
Q 037018 479 -----------------------TPD-------------------------ILGRLPNVQTLRISGDLSHYHSGVSKSLC 510 (663)
Q Consensus 479 -----------------------~~~-------------------------~l~~l~~L~~L~l~~~~~~~~~~~~~~l~ 510 (663)
.+. .+..+++++.++++.+ ......+..+.
T Consensus 389 ~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n--~l~~~~~~~~~ 466 (635)
T 4g8a_A 389 CSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT--HTRVAFNGIFN 466 (635)
T ss_dssp CCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTS--CCEECCTTTTT
T ss_pred cccchhhhhhhhhhhccccccccccccccccccccchhhhhcccccccccccccccccccccccccc--ccccccccccc
Confidence 011 2223334444444444 23334455566
Q ss_pred CCCCCCEEEEeecCcccc-ccccccccccCCCCceEEEEecccCCCCChhhhcCCCCCcEEEeecCCCCCceeeecCCCC
Q 037018 511 ELHKLECLQLVHEGRMWQ-LSRMVLSEYQFPPCLTQLSLSNTQLMEDPMPALEKLPHLEVLKLKQNSYSERKLACVGSGS 589 (663)
Q Consensus 511 ~l~~L~~L~l~~~~~l~~-lp~~~~~l~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~ 589 (663)
.++.|+.|+++++..... .|. .+.. +++|+.|+|++|.+....+..++++++|+.|+|++|.+.+..+.. +.+
T Consensus 467 ~~~~L~~L~Ls~N~~~~~~~~~---~~~~-l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~--~~~ 540 (635)
T 4g8a_A 467 GLSSLEVLKMAGNSFQENFLPD---IFTE-LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFP--YKC 540 (635)
T ss_dssp TCTTCCEEECTTCEEGGGEECS---CCTT-CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGG--GTT
T ss_pred cchhhhhhhhhhcccccccCch---hhhh-ccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhH--HhC
Confidence 788999999997444443 565 6777 999999999999998888889999999999999999988765443 678
Q ss_pred CCcccEEEccCCCCccccccccccc-cccceEEeecCCCC
Q 037018 590 FPQLKILHLKSMLWLEEWTMGAGAM-PKLESLIVNPCAYL 628 (663)
Q Consensus 590 ~~~L~~L~L~~~~~l~~l~~~~~~l-~~L~~L~l~~c~~l 628 (663)
+++|+.|+|++|......|..+..+ ++|+.|++++|+..
T Consensus 541 l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~ 580 (635)
T 4g8a_A 541 LNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 580 (635)
T ss_dssp CTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBC
T ss_pred CCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCc
Confidence 9999999999965444556677777 58999999998854
No 66
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.83 E-value=2.7e-19 Score=193.03 Aligned_cols=282 Identities=18% Similarity=0.162 Sum_probs=211.1
Q ss_pred ceeEEEEEecccccccccccCCCcccEEEeecCccccccccchhHHhcCCCcccEEEecCCcCcccCccCCCCCCcCeEe
Q 037018 322 NVKRCFILEDLIDEFISLEHSDMYLQSFLNHTLESDRLALIDCENFCKKFKHLRVLNLGSAILYQYPPGLENLFHLKYLK 401 (663)
Q Consensus 322 ~~r~lsi~~~~~~~~~~~~~~~~~lr~L~l~~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~l~~lp~~~~~l~~L~~L~ 401 (663)
.++++.+..+.+..++. ..++++.|.+.++.... ++ ..+++|++|++++|.++.+|.. .++|++|+
T Consensus 72 ~l~~L~l~~~~l~~lp~---~~~~L~~L~l~~n~l~~-----lp---~~~~~L~~L~l~~n~l~~l~~~---~~~L~~L~ 137 (454)
T 1jl5_A 72 QAHELELNNLGLSSLPE---LPPHLESLVASCNSLTE-----LP---ELPQSLKSLLVDNNNLKALSDL---PPLLEYLG 137 (454)
T ss_dssp TCSEEECTTSCCSCCCS---CCTTCSEEECCSSCCSS-----CC---CCCTTCCEEECCSSCCSCCCSC---CTTCCEEE
T ss_pred CCCEEEecCCccccCCC---CcCCCCEEEccCCcCCc-----cc---cccCCCcEEECCCCccCcccCC---CCCCCEEE
Confidence 35667777766555442 25799999999987752 23 2358999999999998876642 26999999
Q ss_pred ccCCCCccchhhhcccccccEeeccCCcccccchhhhcCcCCcEEEccCCCCCCCCCCCcCCCCCCcEeeCcCCC-CCCh
Q 037018 402 LNIPSLNCLPSLLCTLLNLQTLEMPASYIDHSPEGIWMMQKLMHLNFGSINLPAPPKNYSSSLKNLIFISSLNPS-SCTP 480 (663)
Q Consensus 402 L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~ 480 (663)
+++|.++.+| .++++++|++|++++|.+..+|.. .++|++|++++| ....+| .++.+++|+.|++.+|. ..++
T Consensus 138 L~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~lp~~---~~~L~~L~L~~n-~l~~l~-~~~~l~~L~~L~l~~N~l~~l~ 211 (454)
T 1jl5_A 138 VSNNQLEKLP-ELQNSSFLKIIDVDNNSLKKLPDL---PPSLEFIAAGNN-QLEELP-ELQNLPFLTAIYADNNSLKKLP 211 (454)
T ss_dssp CCSSCCSSCC-CCTTCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSS-CCSSCC-CCTTCTTCCEEECCSSCCSSCC
T ss_pred CcCCCCCCCc-ccCCCCCCCEEECCCCcCcccCCC---cccccEEECcCC-cCCcCc-cccCCCCCCEEECCCCcCCcCC
Confidence 9999999999 699999999999999988888864 369999999944 444466 68999999999999988 4444
Q ss_pred hhcCCCCCccEEEeecCCCccccchhhhhcCCCCCCEEEEeecCccccccccccccccCCCCceEEEEecccCCCCChhh
Q 037018 481 DILGRLPNVQTLRISGDLSHYHSGVSKSLCELHKLECLQLVHEGRMWQLSRMVLSEYQFPPCLTQLSLSNTQLMEDPMPA 560 (663)
Q Consensus 481 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~lp~~~~~l~~~l~~L~~L~L~~~~l~~~~~~~ 560 (663)
.. .++|+.|++++|. .. .++ .+..+++|++|++++ +.+..+|. . +++|+.|++++|.+.+. +.
T Consensus 212 ~~---~~~L~~L~l~~n~--l~-~lp-~~~~l~~L~~L~l~~-N~l~~l~~---~----~~~L~~L~l~~N~l~~l-~~- 274 (454)
T 1jl5_A 212 DL---PLSLESIVAGNNI--LE-ELP-ELQNLPFLTTIYADN-NLLKTLPD---L----PPSLEALNVRDNYLTDL-PE- 274 (454)
T ss_dssp CC---CTTCCEEECCSSC--CS-SCC-CCTTCTTCCEEECCS-SCCSSCCS---C----CTTCCEEECCSSCCSCC-CC-
T ss_pred CC---cCcccEEECcCCc--CC-ccc-ccCCCCCCCEEECCC-CcCCcccc---c----ccccCEEECCCCccccc-Cc-
Confidence 32 2589999999983 33 556 478999999999997 88888886 2 67899999999997652 22
Q ss_pred hcCCCCCcEEEeecCCCCCce--ee------ec-----CCCCC-CcccEEEccCCCCccccccccccccccceEEeecCC
Q 037018 561 LEKLPHLEVLKLKQNSYSERK--LA------CV-----GSGSF-PQLKILHLKSMLWLEEWTMGAGAMPKLESLIVNPCA 626 (663)
Q Consensus 561 l~~l~~L~~L~L~~~~~~~~~--~~------~~-----~~~~~-~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~c~ 626 (663)
.+++|+.|++++|.+.+.. +. .. ++..+ ++|+.|++++| .+..+|.. +++|+.|++++|.
T Consensus 275 --~~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N-~l~~lp~~---~~~L~~L~L~~N~ 348 (454)
T 1jl5_A 275 --LPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNN-KLIELPAL---PPRLERLIASFNH 348 (454)
T ss_dssp --CCTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSS-CCSCCCCC---CTTCCEEECCSSC
T ss_pred --ccCcCCEEECcCCccCcccCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCC-cccccccc---CCcCCEEECCCCc
Confidence 2467888888877765411 00 00 01123 47888888874 45566543 5889999999886
Q ss_pred CCCCCccccCCCCCCCEEEecCCC
Q 037018 627 YLRKLPEELWCIKSLCKLELHWPQ 650 (663)
Q Consensus 627 ~l~~l~~~l~~l~sL~~L~l~~c~ 650 (663)
++.+|. .+++|+.|++++|+
T Consensus 349 -l~~lp~---~l~~L~~L~L~~N~ 368 (454)
T 1jl5_A 349 -LAEVPE---LPQNLKQLHVEYNP 368 (454)
T ss_dssp -CSCCCC---CCTTCCEEECCSSC
T ss_pred -cccccc---hhhhccEEECCCCC
Confidence 446776 47899999999876
No 67
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.82 E-value=4.2e-21 Score=197.17 Aligned_cols=243 Identities=18% Similarity=0.150 Sum_probs=165.7
Q ss_pred CCCCCcCeEeccCCCCccchhhhcccccccEeeccCCccc--ccchhhh-------cCcCCcEEEccCCCCCCCCCCCc-
Q 037018 392 ENLFHLKYLKLNIPSLNCLPSLLCTLLNLQTLEMPASYID--HSPEGIW-------MMQKLMHLNFGSINLPAPPKNYS- 461 (663)
Q Consensus 392 ~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~--~lp~~l~-------~l~~L~~L~l~~~~~~~~~~~~l- 461 (663)
+..++|++|++++|.+ .+|..+... |+.|++++|.+. .+|..+. .+++|++|++++|.+...+|..+
T Consensus 40 ~~~~~L~~l~l~~n~l-~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 116 (312)
T 1wwl_A 40 GGGRSLEYLLKRVDTE-ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLL 116 (312)
T ss_dssp EEEEECTTHHHHCCTT-CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSS
T ss_pred ccCCCceeEeeccccc-ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHH
Confidence 4455677777777777 666665543 777777777543 3455444 57777777777555555666655
Q ss_pred -CCCCCCcEeeCcCCC-CCChhhcCCC-----CCccEEEeecCCCccccchhhhhcCCCCCCEEEEeecCccc-c--ccc
Q 037018 462 -SSLKNLIFISSLNPS-SCTPDILGRL-----PNVQTLRISGDLSHYHSGVSKSLCELHKLECLQLVHEGRMW-Q--LSR 531 (663)
Q Consensus 462 -~~l~~L~~L~l~~~~-~~~~~~l~~l-----~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~-~--lp~ 531 (663)
..+++|++|+++++. ...+..++.+ ++|+.|++++| ......+..+..+++|++|++++ +.+. . +|.
T Consensus 117 ~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N--~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~ 193 (312)
T 1wwl_A 117 EATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQA--HSLNFSCEQVRVFPALSTLDLSD-NPELGERGLIS 193 (312)
T ss_dssp SCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESC--SCCCCCTTTCCCCSSCCEEECCS-CTTCHHHHHHH
T ss_pred HhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCC--CCccchHHHhccCCCCCEEECCC-CCcCcchHHHH
Confidence 677777777777776 3335555544 78888888887 35445556777788888888886 4432 2 232
Q ss_pred ccccc--ccCCCCceEEEEecccCCCC---ChhhhcCCCCCcEEEeecCCCCCceeeecCCCCCCcccEEEccCCCCccc
Q 037018 532 MVLSE--YQFPPCLTQLSLSNTQLMED---PMPALEKLPHLEVLKLKQNSYSERKLACVGSGSFPQLKILHLKSMLWLEE 606 (663)
Q Consensus 532 ~~~~l--~~~l~~L~~L~L~~~~l~~~---~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~ 606 (663)
.+ .. +++|+.|++++|.+... ....+..+++|+.|++++|.+.+..+... +..+++|+.|++++| .++.
T Consensus 194 ---~~~~~~-l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~-~~~l~~L~~L~Ls~N-~l~~ 267 (312)
T 1wwl_A 194 ---ALCPLK-FPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPS-CDWPSQLNSLNLSFT-GLKQ 267 (312)
T ss_dssp ---HSCTTS-CTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSC-CCCCTTCCEEECTTS-CCSS
T ss_pred ---HHHhcc-CCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhh-hhhcCCCCEEECCCC-ccCh
Confidence 33 55 78888888888887531 12334577888888888888877553222 456788888888885 5667
Q ss_pred cccccccccccceEEeecCCCCCCCccccCCCCCCCEEEecCCC
Q 037018 607 WTMGAGAMPKLESLIVNPCAYLRKLPEELWCIKSLCKLELHWPQ 650 (663)
Q Consensus 607 l~~~~~~l~~L~~L~l~~c~~l~~l~~~l~~l~sL~~L~l~~c~ 650 (663)
+|..+. ++|+.|++++|.. +.+|. +..+++|+.|++++++
T Consensus 268 ip~~~~--~~L~~L~Ls~N~l-~~~p~-~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 268 VPKGLP--AKLSVLDLSYNRL-DRNPS-PDELPQVGNLSLKGNP 307 (312)
T ss_dssp CCSSCC--SEEEEEECCSSCC-CSCCC-TTTSCEEEEEECTTCT
T ss_pred hhhhcc--CCceEEECCCCCC-CCChh-HhhCCCCCEEeccCCC
Confidence 777665 8888888888864 44565 7788888888888876
No 68
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.82 E-value=3.4e-22 Score=217.10 Aligned_cols=325 Identities=16% Similarity=0.023 Sum_probs=232.2
Q ss_pred CCceeEEEEEecccccccccccC--CCcccEEEeecCccccccccchhHHhcCCCcccEEEecCCcCcc-cCcc-CCCCC
Q 037018 320 LANVKRCFILEDLIDEFISLEHS--DMYLQSFLNHTLESDRLALIDCENFCKKFKHLRVLNLGSAILYQ-YPPG-LENLF 395 (663)
Q Consensus 320 ~~~~r~lsi~~~~~~~~~~~~~~--~~~lr~L~l~~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~l~~-lp~~-~~~l~ 395 (663)
+..++++.+.++.+.+....... +++++.|.+.++.........++..+..+++|++|++++|.+.. .+.. ...++
T Consensus 2 ~~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~ 81 (461)
T 1z7x_W 2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ 81 (461)
T ss_dssp CEEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred CccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHh
Confidence 45678888988776554422212 88999999999987532233455555899999999999999872 2222 22344
Q ss_pred ----CcCeEeccCCCCc-----cchhhhcccccccEeeccCCccccc-chhhh-----cCcCCcEEEccCCCCCCC----
Q 037018 396 ----HLKYLKLNIPSLN-----CLPSLLCTLLNLQTLEMPASYIDHS-PEGIW-----MMQKLMHLNFGSINLPAP---- 456 (663)
Q Consensus 396 ----~L~~L~L~~~~i~-----~lp~~i~~L~~L~~L~L~~~~l~~l-p~~l~-----~l~~L~~L~l~~~~~~~~---- 456 (663)
+|++|++++|.+. .+|..+..+++|++|++++|.+... +..+. ..++|++|++++|.+...
T Consensus 82 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~ 161 (461)
T 1z7x_W 82 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEP 161 (461)
T ss_dssp STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHH
T ss_pred hCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHH
Confidence 7999999999988 5688899999999999999976542 22222 356899999995544332
Q ss_pred CCCCcCCCCCCcEeeCcCCC--CCChhhcC-----CCCCccEEEeecCCCcccc----chhhhhcCCCCCCEEEEeecCc
Q 037018 457 PKNYSSSLKNLIFISSLNPS--SCTPDILG-----RLPNVQTLRISGDLSHYHS----GVSKSLCELHKLECLQLVHEGR 525 (663)
Q Consensus 457 ~~~~l~~l~~L~~L~l~~~~--~~~~~~l~-----~l~~L~~L~l~~~~~~~~~----~~~~~l~~l~~L~~L~l~~~~~ 525 (663)
++..+..+++|++|+++++. ...+..+. ..++|+.|++++|. ... .++..+..+++|++|++++ +.
T Consensus 162 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~--l~~~~~~~l~~~l~~~~~L~~L~Ls~-n~ 238 (461)
T 1z7x_W 162 LASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCG--VTSDNCRDLCGIVASKASLRELALGS-NK 238 (461)
T ss_dssp HHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSC--CBTTHHHHHHHHHHHCTTCCEEECCS-SB
T ss_pred HHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCC--CcHHHHHHHHHHHHhCCCccEEeccC-Cc
Confidence 34556678999999999987 22222222 46799999999994 333 3677788899999999997 66
Q ss_pred cccc-----cccccccccCCCCceEEEEecccCCCC----ChhhhcCCCCCcEEEeecCCCCCceeeec---CCCCCCcc
Q 037018 526 MWQL-----SRMVLSEYQFPPCLTQLSLSNTQLMED----PMPALEKLPHLEVLKLKQNSYSERKLACV---GSGSFPQL 593 (663)
Q Consensus 526 l~~l-----p~~~~~l~~~l~~L~~L~L~~~~l~~~----~~~~l~~l~~L~~L~L~~~~~~~~~~~~~---~~~~~~~L 593 (663)
++.. +.. .... +++|+.|++++|.++.. .+..+..+++|+.|++++|.+.+..+... -....++|
T Consensus 239 l~~~~~~~l~~~--~~~~-~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L 315 (461)
T 1z7x_W 239 LGDVGMAELCPG--LLHP-SSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQL 315 (461)
T ss_dssp CHHHHHHHHHHH--HTST-TCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCC
T ss_pred CChHHHHHHHHH--HhcC-CCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccc
Confidence 6532 220 2234 78999999999988654 35567789999999999998765432211 02334799
Q ss_pred cEEEccCCCCccc----cccccccccccceEEeecCCCCCCCcc----ccCC-CCCCCEEEecCCC
Q 037018 594 KILHLKSMLWLEE----WTMGAGAMPKLESLIVNPCAYLRKLPE----ELWC-IKSLCKLELHWPQ 650 (663)
Q Consensus 594 ~~L~L~~~~~l~~----l~~~~~~l~~L~~L~l~~c~~l~~l~~----~l~~-l~sL~~L~l~~c~ 650 (663)
+.|++++|..-.. ++..+..+++|+.|++++|......+. .+.. .++|++|++++|.
T Consensus 316 ~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~ 381 (461)
T 1z7x_W 316 ESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCD 381 (461)
T ss_dssp CEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred eeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCC
Confidence 9999999863332 455677889999999999975433222 3332 6899999999997
No 69
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.81 E-value=8.8e-21 Score=212.79 Aligned_cols=220 Identities=12% Similarity=0.056 Sum_probs=112.7
Q ss_pred ccEEEeecCccccccccchhHHhcCCCcccEEEecCCcCcc-----cCccCCCCCCcCeEeccCCCCc-----cchhhhc
Q 037018 346 LQSFLNHTLESDRLALIDCENFCKKFKHLRVLNLGSAILYQ-----YPPGLENLFHLKYLKLNIPSLN-----CLPSLLC 415 (663)
Q Consensus 346 lr~L~l~~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~l~~-----lp~~~~~l~~L~~L~L~~~~i~-----~lp~~i~ 415 (663)
++.|.+.++... ....+..+...+++|++|++++|.+.. ++.....+++|++|++++|.+. .++..+.
T Consensus 140 L~~L~L~~~~~~--~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~ 217 (592)
T 3ogk_B 140 LETLKLDKCSGF--TTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIAR 217 (592)
T ss_dssp CCEEEEESCEEE--EHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHH
T ss_pred CcEEECcCCCCc--CHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHh
Confidence 666666665421 122233443566666666666665431 2222334566666666666553 3444455
Q ss_pred ccccccEeeccCCcccccchhhhcCcCCcEEEccC--------------------------CCCCCCCCCCcCCCCCCcE
Q 037018 416 TLLNLQTLEMPASYIDHSPEGIWMMQKLMHLNFGS--------------------------INLPAPPKNYSSSLKNLIF 469 (663)
Q Consensus 416 ~L~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~l~~--------------------------~~~~~~~~~~l~~l~~L~~ 469 (663)
++++|++|++++|.+..+|..+..+++|++|+++. ......+|..+..+++|++
T Consensus 218 ~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~ 297 (592)
T 3ogk_B 218 NCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRK 297 (592)
T ss_dssp HCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCE
T ss_pred hCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcE
Confidence 56666666666665555665566666666666642 1112233333444556666
Q ss_pred eeCcCCC---CCChhhcCCCCCccEEEeecCCCccccchhhhhcCCCCCCEEEEee----------cCcccc--cccccc
Q 037018 470 ISSLNPS---SCTPDILGRLPNVQTLRISGDLSHYHSGVSKSLCELHKLECLQLVH----------EGRMWQ--LSRMVL 534 (663)
Q Consensus 470 L~l~~~~---~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~----------~~~l~~--lp~~~~ 534 (663)
|++++|. ......+..+++|+.|++.++ .....++.....+++|++|++++ |+.++. ++.
T Consensus 298 L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~--~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~--- 372 (592)
T 3ogk_B 298 LDLLYALLETEDHCTLIQKCPNLEVLETRNV--IGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIA--- 372 (592)
T ss_dssp EEETTCCCCHHHHHHHHTTCTTCCEEEEEGG--GHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHH---
T ss_pred EecCCCcCCHHHHHHHHHhCcCCCEEeccCc--cCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHH---
Confidence 6665554 111223455666666666533 22223333334556666666663 444441 222
Q ss_pred ccccCCCCceEEEEecccCCCCChhhhcC-CCCCcEEEee
Q 037018 535 SEYQFPPCLTQLSLSNTQLMEDPMPALEK-LPHLEVLKLK 573 (663)
Q Consensus 535 ~l~~~l~~L~~L~L~~~~l~~~~~~~l~~-l~~L~~L~L~ 573 (663)
.... +++|++|+++.+.+++..+..+.. +++|+.|+++
T Consensus 373 l~~~-~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~ 411 (592)
T 3ogk_B 373 LAQG-CQELEYMAVYVSDITNESLESIGTYLKNLCDFRLV 411 (592)
T ss_dssp HHHH-CTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEE
T ss_pred HHhh-CccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEe
Confidence 2233 566666666555554444444443 6666666664
No 70
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.81 E-value=1.8e-20 Score=204.25 Aligned_cols=237 Identities=16% Similarity=0.103 Sum_probs=191.4
Q ss_pred cCCCcccEEEecCCcCcccC-ccCCCCCCcCeEeccCCCCccchhhhcccccccEeeccCCcccccchhhhcCcCCcEEE
Q 037018 369 KKFKHLRVLNLGSAILYQYP-PGLENLFHLKYLKLNIPSLNCLPSLLCTLLNLQTLEMPASYIDHSPEGIWMMQKLMHLN 447 (663)
Q Consensus 369 ~~l~~Lr~L~L~~~~l~~lp-~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~ 447 (663)
..+++|++|++++|.+..++ ..++.+++|++|+|++|.+...++ ++.+++|++|++++|.+..+|. .++|++|+
T Consensus 31 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~----~~~L~~L~ 105 (487)
T 3oja_A 31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLV----GPSIETLH 105 (487)
T ss_dssp TTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEEE----CTTCCEEE
T ss_pred ccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCCC----CCCcCEEE
Confidence 34559999999999998664 679999999999999999987665 8999999999999998888774 38999999
Q ss_pred ccCCCCCCCCCCCcCCCCCCcEeeCcCCC--CCChhhcCCCCCccEEEeecCCCccccchhhhhc-CCCCCCEEEEeecC
Q 037018 448 FGSINLPAPPKNYSSSLKNLIFISSLNPS--SCTPDILGRLPNVQTLRISGDLSHYHSGVSKSLC-ELHKLECLQLVHEG 524 (663)
Q Consensus 448 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~-~l~~L~~L~l~~~~ 524 (663)
+++|.+....+ ..+++|+.|++++|. ...+..++.+++|+.|++++| ......+..+. .+++|+.|++++ +
T Consensus 106 L~~N~l~~~~~---~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N--~l~~~~~~~l~~~l~~L~~L~Ls~-N 179 (487)
T 3oja_A 106 AANNNISRVSC---SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLN--EIDTVNFAELAASSDTLEHLNLQY-N 179 (487)
T ss_dssp CCSSCCCCEEE---CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTS--CCCEEEGGGGGGGTTTCCEEECTT-S
T ss_pred CcCCcCCCCCc---cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCC--CCCCcChHHHhhhCCcccEEecCC-C
Confidence 99554443333 246889999999998 444567888999999999999 46555666665 789999999997 8
Q ss_pred ccccccccccccccCCCCceEEEEecccCCCCChhhhcCCCCCcEEEeecCCCCCceeeecCCCCCCcccEEEccCCCCc
Q 037018 525 RMWQLSRMVLSEYQFPPCLTQLSLSNTQLMEDPMPALEKLPHLEVLKLKQNSYSERKLACVGSGSFPQLKILHLKSMLWL 604 (663)
Q Consensus 525 ~l~~lp~~~~~l~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l 604 (663)
.++.+|. ... +++|+.|++++|.+++.. +.+..+++|+.|++++|.+.+.. . . +..+++|+.|++++|+..
T Consensus 180 ~l~~~~~----~~~-l~~L~~L~Ls~N~l~~~~-~~~~~l~~L~~L~Ls~N~l~~lp-~-~-l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 180 FIYDVKG----QVV-FAKLKTLDLSSNKLAFMG-PEFQSAAGVTWISLRNNKLVLIE-K-A-LRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp CCCEEEC----CCC-CTTCCEEECCSSCCCEEC-GGGGGGTTCSEEECTTSCCCEEC-T-T-CCCCTTCCEEECTTCCBC
T ss_pred ccccccc----ccc-CCCCCEEECCCCCCCCCC-HhHcCCCCccEEEecCCcCcccc-h-h-hccCCCCCEEEcCCCCCc
Confidence 8888874 445 899999999999987644 45889999999999999988522 2 2 577899999999997654
Q ss_pred -cccccccccccccceEEeecC
Q 037018 605 -EEWTMGAGAMPKLESLIVNPC 625 (663)
Q Consensus 605 -~~l~~~~~~l~~L~~L~l~~c 625 (663)
..+|..+..++.|+.|++..+
T Consensus 251 c~~~~~~~~~l~~L~~l~~~~~ 272 (487)
T 3oja_A 251 CGTLRDFFSKNQRVQTVAKQTV 272 (487)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHH
T ss_pred CcchHHHHHhCCCCcEEecccc
Confidence 366777888999999888743
No 71
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.80 E-value=9.2e-21 Score=195.07 Aligned_cols=265 Identities=17% Similarity=0.125 Sum_probs=207.4
Q ss_pred CCcccEEEeecCccccccccchhHHhcCCCcccEEEecCCcCcccCccCCCCCCcCeEeccCCCCccchhhhcccccccE
Q 037018 343 DMYLQSFLNHTLESDRLALIDCENFCKKFKHLRVLNLGSAILYQYPPGLENLFHLKYLKLNIPSLNCLPSLLCTLLNLQT 422 (663)
Q Consensus 343 ~~~lr~L~l~~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~ 422 (663)
.++++.|.+.++.... ..+..+..+++|++|++++|.+...+. +..+++|++|++++|.++.+| ..++|++
T Consensus 33 ~~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~l~----~~~~L~~ 103 (317)
T 3o53_A 33 AWNVKELDLSGNPLSQ----ISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELL----VGPSIET 103 (317)
T ss_dssp GGGCSEEECTTSCCCC----CCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEEEEE----ECTTCCE
T ss_pred CCCCCEEECcCCccCc----CCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCcccccc----CCCCcCE
Confidence 6689999999997752 224444999999999999999985554 889999999999999999776 3589999
Q ss_pred eeccCCcccccchhhhcCcCCcEEEccCCCCCCCCCCCcCCCCCCcEeeCcCCC-CC-Chhhc-CCCCCccEEEeecCCC
Q 037018 423 LEMPASYIDHSPEGIWMMQKLMHLNFGSINLPAPPKNYSSSLKNLIFISSLNPS-SC-TPDIL-GRLPNVQTLRISGDLS 499 (663)
Q Consensus 423 L~L~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~-~~~~l-~~l~~L~~L~l~~~~~ 499 (663)
|++++|.+..++.. .+++|++|++++|.+....+..++.+++|+.|+++++. .. .+..+ ..+++|+.|++++|.
T Consensus 104 L~l~~n~l~~~~~~--~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~- 180 (317)
T 3o53_A 104 LHAANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF- 180 (317)
T ss_dssp EECCSSCCSEEEEC--CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC-
T ss_pred EECCCCccCCcCcc--ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCc-
Confidence 99999988887643 47899999999665555556678889999999999998 33 34444 578999999999993
Q ss_pred ccccchhhhhcCCCCCCEEEEeecCccccccccccccccCCCCceEEEEecccCCCCChhhhcCCCCCcEEEeecCCCCC
Q 037018 500 HYHSGVSKSLCELHKLECLQLVHEGRMWQLSRMVLSEYQFPPCLTQLSLSNTQLMEDPMPALEKLPHLEVLKLKQNSYSE 579 (663)
Q Consensus 500 ~~~~~~~~~l~~l~~L~~L~l~~~~~l~~lp~~~~~l~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~ 579 (663)
.. .++ ....+++|++|++++ +.++.+|. .+.. +++|+.|++++|.+.. .+..+..+++|+.|++++|.+..
T Consensus 181 -l~-~~~-~~~~l~~L~~L~Ls~-N~l~~l~~---~~~~-l~~L~~L~L~~N~l~~-l~~~~~~l~~L~~L~l~~N~~~~ 251 (317)
T 3o53_A 181 -IY-DVK-GQVVFAKLKTLDLSS-NKLAFMGP---EFQS-AAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHC 251 (317)
T ss_dssp -CC-EEE-CCCCCTTCCEEECCS-SCCCEECG---GGGG-GTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCCBH
T ss_pred -Cc-ccc-cccccccCCEEECCC-CcCCcchh---hhcc-cCcccEEECcCCcccc-hhhHhhcCCCCCEEEccCCCccC
Confidence 32 333 233589999999997 89999988 7888 9999999999999864 55678899999999999999983
Q ss_pred ceeeecCCCCCCcccEEEccCCCCccccccccccccccceEEeecCCCCC
Q 037018 580 RKLACVGSGSFPQLKILHLKSMLWLEEWTMGAGAMPKLESLIVNPCAYLR 629 (663)
Q Consensus 580 ~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~ 629 (663)
...... +..+++|+.|++.+++.+..........+.+....-..|..+.
T Consensus 252 ~~~~~~-~~~~~~L~~l~l~~~~~l~~~~~~~~~~~~~~~~~~~cc~~l~ 300 (317)
T 3o53_A 252 GTLRDF-FSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLP 300 (317)
T ss_dssp HHHHHH-HHTCHHHHHHHHHHHHHHHSSSSCCCSSTTCEEETTEEEBCCT
T ss_pred cCHHHH-HhccccceEEECCCchhccCCchhccCCCceecccceeeccCC
Confidence 333333 5788999999999877777555444444555554445565543
No 72
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.80 E-value=6.8e-21 Score=195.57 Aligned_cols=245 Identities=18% Similarity=0.189 Sum_probs=166.4
Q ss_pred cCCCcccEEEecCCcCcccCccCCCCCCcCeEeccCCCCc--cchhhhc-------ccccccEeeccCCccc-ccchhh-
Q 037018 369 KKFKHLRVLNLGSAILYQYPPGLENLFHLKYLKLNIPSLN--CLPSLLC-------TLLNLQTLEMPASYID-HSPEGI- 437 (663)
Q Consensus 369 ~~l~~Lr~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~i~--~lp~~i~-------~L~~L~~L~L~~~~l~-~lp~~l- 437 (663)
...++|+.|++++|.+ .+|..+... |++|++++|.+. .+|..+. ++++|++|++++|.+. .+|..+
T Consensus 40 ~~~~~L~~l~l~~n~l-~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 116 (312)
T 1wwl_A 40 GGGRSLEYLLKRVDTE-ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLL 116 (312)
T ss_dssp EEEEECTTHHHHCCTT-CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSS
T ss_pred ccCCCceeEeeccccc-ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHH
Confidence 4555667777777777 666554433 777777777664 3555554 5777777777777654 456654
Q ss_pred -hcCcCCcEEEccCCCCCCCCCCCcCCC-----CCCcEeeCcCCC--CCChhhcCCCCCccEEEeecCCCccccc--hhh
Q 037018 438 -WMMQKLMHLNFGSINLPAPPKNYSSSL-----KNLIFISSLNPS--SCTPDILGRLPNVQTLRISGDLSHYHSG--VSK 507 (663)
Q Consensus 438 -~~l~~L~~L~l~~~~~~~~~~~~l~~l-----~~L~~L~l~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~--~~~ 507 (663)
..+++|++|++++|.+... |..++.+ ++|++|+++++. ...+..++.+++|+.|++++|. ..+. .+.
T Consensus 117 ~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~--l~~~~~~~~ 193 (312)
T 1wwl_A 117 EATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNP--ELGERGLIS 193 (312)
T ss_dssp SCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCT--TCHHHHHHH
T ss_pred HhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCC--cCcchHHHH
Confidence 6777777777774443333 6555555 777777777777 3334677788888888888873 3322 344
Q ss_pred hh--cCCCCCCEEEEeecCcccccccccccc-ccCCCCceEEEEecccCCCCC-hhhhcCCCCCcEEEeecCCCCCceee
Q 037018 508 SL--CELHKLECLQLVHEGRMWQLSRMVLSE-YQFPPCLTQLSLSNTQLMEDP-MPALEKLPHLEVLKLKQNSYSERKLA 583 (663)
Q Consensus 508 ~l--~~l~~L~~L~l~~~~~l~~lp~~~~~l-~~~l~~L~~L~L~~~~l~~~~-~~~l~~l~~L~~L~L~~~~~~~~~~~ 583 (663)
.+ ..+++|++|++++ +.++.++.....+ .. +++|+.|++++|.+.+.. ...+..+++|+.|++++|.++. .+.
T Consensus 194 ~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~~~~-l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~-ip~ 270 (312)
T 1wwl_A 194 ALCPLKFPTLQVLALRN-AGMETPSGVCSALAAA-RVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQ-VPK 270 (312)
T ss_dssp HSCTTSCTTCCEEECTT-SCCCCHHHHHHHHHHT-TCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSS-CCS
T ss_pred HHHhccCCCCCEEECCC-CcCcchHHHHHHHHhc-CCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccCh-hhh
Confidence 44 6788888888886 6776433200022 34 788999999999887655 3456678899999999888873 322
Q ss_pred ecCCCCCCcccEEEccCCCCccccccccccccccceEEeecCCCC
Q 037018 584 CVGSGSFPQLKILHLKSMLWLEEWTMGAGAMPKLESLIVNPCAYL 628 (663)
Q Consensus 584 ~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l 628 (663)
. -+++|+.|+|++| .++.+|. +..+++|+.|++++|+..
T Consensus 271 ~----~~~~L~~L~Ls~N-~l~~~p~-~~~l~~L~~L~L~~N~l~ 309 (312)
T 1wwl_A 271 G----LPAKLSVLDLSYN-RLDRNPS-PDELPQVGNLSLKGNPFL 309 (312)
T ss_dssp S----CCSEEEEEECCSS-CCCSCCC-TTTSCEEEEEECTTCTTT
T ss_pred h----ccCCceEEECCCC-CCCCChh-HhhCCCCCEEeccCCCCC
Confidence 2 1279999999985 6777776 888999999999998754
No 73
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.80 E-value=3e-20 Score=208.43 Aligned_cols=298 Identities=13% Similarity=0.028 Sum_probs=192.4
Q ss_pred CCcccEEEeecCccccccccchhHHhcCCCc-ccEEEecCCc-Cc--ccCccCCCCCCcCeEeccCCCCcc-----chhh
Q 037018 343 DMYLQSFLNHTLESDRLALIDCENFCKKFKH-LRVLNLGSAI-LY--QYPPGLENLFHLKYLKLNIPSLNC-----LPSL 413 (663)
Q Consensus 343 ~~~lr~L~l~~~~~~~~~~~~l~~~~~~l~~-Lr~L~L~~~~-l~--~lp~~~~~l~~L~~L~L~~~~i~~-----lp~~ 413 (663)
+++++.|.+.++.... ..+..+...++. |++|++++|. +. .++.....+++|++|++++|.+.. ++..
T Consensus 111 ~~~L~~L~L~~~~i~~---~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~ 187 (592)
T 3ogk_B 111 LRQLKSVHFRRMIVSD---LDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHEL 187 (592)
T ss_dssp CTTCCEEEEESCBCCH---HHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHH
T ss_pred CCCCCeEEeeccEecH---HHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHH
Confidence 7899999999986542 222344222455 9999999987 33 343444578999999999997652 5556
Q ss_pred hcccccccEeeccCCccc-----ccchhhhcCcCCcEEEccCCCCCCCCCCCc---------------------------
Q 037018 414 LCTLLNLQTLEMPASYID-----HSPEGIWMMQKLMHLNFGSINLPAPPKNYS--------------------------- 461 (663)
Q Consensus 414 i~~L~~L~~L~L~~~~l~-----~lp~~l~~l~~L~~L~l~~~~~~~~~~~~l--------------------------- 461 (663)
+..+++|++|++++|.+. .++..+..+++|++|++++ +....++..+
T Consensus 188 ~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~-~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l 266 (592)
T 3ogk_B 188 AQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGD-FEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNL 266 (592)
T ss_dssp HHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSS-CBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCC
T ss_pred HhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccC-ccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHh
Confidence 678999999999999664 4555677899999999994 4332333333
Q ss_pred CCCCCCcEeeCcCCC-CCChhhcCCCCCccEEEeecCCCccccchhhhhcCCCCCCEEEEeecCccccccccccccccCC
Q 037018 462 SSLKNLIFISSLNPS-SCTPDILGRLPNVQTLRISGDLSHYHSGVSKSLCELHKLECLQLVHEGRMWQLSRMVLSEYQFP 540 (663)
Q Consensus 462 ~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~lp~~~~~l~~~l 540 (663)
..+++|+.|.+..+. ..++..+..+++|++|++++|. .....+...+..+++|+.|+++++-.-..++. .... +
T Consensus 267 ~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~---~~~~-~ 341 (592)
T 3ogk_B 267 VFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYAL-LETEDHCTLIQKCPNLEVLETRNVIGDRGLEV---LAQY-C 341 (592)
T ss_dssp CCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCC-CCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHH---HHHH-C
T ss_pred hccccccccCccccchhHHHHHHhhcCCCcEEecCCCc-CCHHHHHHHHHhCcCCCEEeccCccCHHHHHH---HHHh-C
Confidence 344455555554443 4555666777888888888873 12223334567888899998873211123443 3455 8
Q ss_pred CCceEEEEec----------c-cCCCCChh-hhcCCCCCcEEEeecCCCCCceeeecCCCCCCcccEEEccC---CCCcc
Q 037018 541 PCLTQLSLSN----------T-QLMEDPMP-ALEKLPHLEVLKLKQNSYSERKLACVGSGSFPQLKILHLKS---MLWLE 605 (663)
Q Consensus 541 ~~L~~L~L~~----------~-~l~~~~~~-~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~---~~~l~ 605 (663)
++|++|++++ | .++..... ....+++|+.|+++.+.+++..+... ...+++|+.|++++ |+.++
T Consensus 342 ~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l-~~~~~~L~~L~l~~~~~~n~l~ 420 (592)
T 3ogk_B 342 KQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESI-GTYLKNLCDFRLVLLDREERIT 420 (592)
T ss_dssp TTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHH-HHHCCSCCEEEEEECSCCSCCS
T ss_pred CCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHH-HhhCCCCcEEEEeecCCCcccc
Confidence 8999999994 3 44333233 34569999999998777765544332 22366677776652 23333
Q ss_pred ccc------ccc---------------------------ccccccceEEeecCCCCC-CCccccCCCCCCCEEEecCCC
Q 037018 606 EWT------MGA---------------------------GAMPKLESLIVNPCAYLR-KLPEELWCIKSLCKLELHWPQ 650 (663)
Q Consensus 606 ~l~------~~~---------------------------~~l~~L~~L~l~~c~~l~-~l~~~l~~l~sL~~L~l~~c~ 650 (663)
..| ..+ ..+++|+.|++++|.... .++..+..+++|+.|+|++|+
T Consensus 421 ~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~ 499 (592)
T 3ogk_B 421 DLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCC 499 (592)
T ss_dssp SCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCC
T ss_pred CchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCC
Confidence 211 111 235667777777666432 244455778899999999997
No 74
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.78 E-value=2.5e-18 Score=173.19 Aligned_cols=200 Identities=20% Similarity=0.212 Sum_probs=152.5
Q ss_pred CcccEEEecCCcCcccCc-cCCCCCCcCeEeccCCCCccchh-hhcccccccEeeccCCcccccc-hhhhcCcCCcEEEc
Q 037018 372 KHLRVLNLGSAILYQYPP-GLENLFHLKYLKLNIPSLNCLPS-LLCTLLNLQTLEMPASYIDHSP-EGIWMMQKLMHLNF 448 (663)
Q Consensus 372 ~~Lr~L~L~~~~l~~lp~-~~~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~l~~lp-~~l~~l~~L~~L~l 448 (663)
++|++|++++|.++.++. .+..+++|++|++++|.+..++. .++.+++|++|++++|.+..++ ..+..+++|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 468899999988886654 68888899999999988887764 6788889999999998777765 45788899999999
Q ss_pred cCCCCCCCCCCCcCCCCCCcEeeCcCCC-C--CChhhcCCCCCccEEEeecCCCccccchhhhhcCCCCCC----EEEEe
Q 037018 449 GSINLPAPPKNYSSSLKNLIFISSLNPS-S--CTPDILGRLPNVQTLRISGDLSHYHSGVSKSLCELHKLE----CLQLV 521 (663)
Q Consensus 449 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~--~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~----~L~l~ 521 (663)
++|......+..++.+++|++|++.++. . .++..++.+++|+.|++++|. .....+..+..+++|+ +|+++
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~--l~~~~~~~~~~l~~L~~l~l~L~ls 185 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK--IQSIYCTDLRVLHQMPLLNLSLDLS 185 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC--CCEECGGGGHHHHTCTTCCEEEECC
T ss_pred CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCC--CCcCCHHHhhhhhhccccceeeecC
Confidence 8555454444468888889999888887 3 357788888899999998883 4433334444444454 78888
Q ss_pred ecCccccccccccccccCCCCceEEEEecccCCCCChhhhcCCCCCcEEEeecCCCC
Q 037018 522 HEGRMWQLSRMVLSEYQFPPCLTQLSLSNTQLMEDPMPALEKLPHLEVLKLKQNSYS 578 (663)
Q Consensus 522 ~~~~l~~lp~~~~~l~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~ 578 (663)
+ +.+..+|. .... ..+|+.|++++|.++......+..+++|+.|++++|.+.
T Consensus 186 ~-n~l~~~~~---~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 237 (276)
T 2z62_A 186 L-NPMNFIQP---GAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 237 (276)
T ss_dssp S-SCCCEECT---TSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBC
T ss_pred C-CcccccCc---cccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCccc
Confidence 6 77887776 5555 568899999988887666666788888888888887764
No 75
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.77 E-value=3.9e-18 Score=174.48 Aligned_cols=195 Identities=19% Similarity=0.225 Sum_probs=142.7
Q ss_pred cCCCcccEEEecCCcCcccCccCCCCCCcCeEeccCCCCccchhhhcccccccEeeccCCcccccchhhhcCcCCcEEEc
Q 037018 369 KKFKHLRVLNLGSAILYQYPPGLENLFHLKYLKLNIPSLNCLPSLLCTLLNLQTLEMPASYIDHSPEGIWMMQKLMHLNF 448 (663)
Q Consensus 369 ~~l~~Lr~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~l 448 (663)
..+++|+.|+++++.++.++ .+..+++|++|++++|.+..++. ++.+++|++|++++|.+..++ .+..+++|++|++
T Consensus 38 ~~l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l 114 (308)
T 1h6u_A 38 ADLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDL 114 (308)
T ss_dssp HHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEEC
T ss_pred HHcCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEEC
Confidence 45677888888888877765 57778888888888888887776 778888888888888777775 5777888888888
Q ss_pred cCCCCCCCCCCCcCCCCCCcEeeCcCCC-CCChhhcCCCCCccEEEeecCCCccccchhhhhcCCCCCCEEEEeecCccc
Q 037018 449 GSINLPAPPKNYSSSLKNLIFISSLNPS-SCTPDILGRLPNVQTLRISGDLSHYHSGVSKSLCELHKLECLQLVHEGRMW 527 (663)
Q Consensus 449 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~ 527 (663)
++ +....++. +..+++|+.|+++++. ...+. ++.+++|+.|++++|. .. .++. +..+++|+.|++++ +.++
T Consensus 115 ~~-n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~--l~-~~~~-l~~l~~L~~L~l~~-n~l~ 186 (308)
T 1h6u_A 115 TS-TQITDVTP-LAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQ--VS-DLTP-LANLSKLTTLKADD-NKIS 186 (308)
T ss_dssp TT-SCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSC--CC-CCGG-GTTCTTCCEEECCS-SCCC
T ss_pred CC-CCCCCchh-hcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCc--CC-CChh-hcCCCCCCEEECCC-CccC
Confidence 84 33334443 7777888888888777 33333 7778888888888872 22 3333 67788888888886 7777
Q ss_pred cccccccccccCCCCceEEEEecccCCCCChhhhcCCCCCcEEEeecCCCCCce
Q 037018 528 QLSRMVLSEYQFPPCLTQLSLSNTQLMEDPMPALEKLPHLEVLKLKQNSYSERK 581 (663)
Q Consensus 528 ~lp~~~~~l~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~ 581 (663)
.++ .+.. +++|+.|++++|.+.+.. .+..+++|+.|++++|.+++..
T Consensus 187 ~~~----~l~~-l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~~~ 233 (308)
T 1h6u_A 187 DIS----PLAS-LPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITNQP 233 (308)
T ss_dssp CCG----GGGG-CTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEECCC
T ss_pred cCh----hhcC-CCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeecCC
Confidence 776 3566 788888888888875443 4778888888888888776533
No 76
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.76 E-value=1.6e-17 Score=166.66 Aligned_cols=197 Identities=23% Similarity=0.270 Sum_probs=124.9
Q ss_pred cccEEEecCCcCcccCccCCCCCCcCeEeccCCCCccchh-hhcccccccEeeccCCcccccchh-hhcCcCCcEEEccC
Q 037018 373 HLRVLNLGSAILYQYPPGLENLFHLKYLKLNIPSLNCLPS-LLCTLLNLQTLEMPASYIDHSPEG-IWMMQKLMHLNFGS 450 (663)
Q Consensus 373 ~Lr~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~l~~lp~~-l~~l~~L~~L~l~~ 450 (663)
..+.++++++.++.+|..+. ++|++|++++|.+..+|. .++++++|++|++++|.+..+|.. +..+++|++|++++
T Consensus 17 ~~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~ 94 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD 94 (270)
T ss_dssp TTTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS
T ss_pred CCCEEEccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC
Confidence 46788888888887776554 578888888888887764 677888888888888877777765 46788888888884
Q ss_pred CCCCCCCCCCcCCCCCCcEeeCcCCC--CCChhhcCCCCCccEEEeecCCCccccchhhhhcCCCCCCEEEEeecCcccc
Q 037018 451 INLPAPPKNYSSSLKNLIFISSLNPS--SCTPDILGRLPNVQTLRISGDLSHYHSGVSKSLCELHKLECLQLVHEGRMWQ 528 (663)
Q Consensus 451 ~~~~~~~~~~l~~l~~L~~L~l~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~ 528 (663)
|.+....+..+..+++|+.|++.++. ...+..++.+++|+.|++++| ......+..+..+++|++|++++ +.++.
T Consensus 95 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n--~l~~~~~~~~~~l~~L~~L~L~~-n~l~~ 171 (270)
T 2o6q_A 95 NKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYN--ELQSLPKGVFDKLTSLKELRLYN-NQLKR 171 (270)
T ss_dssp SCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS--CCCCCCTTTTTTCTTCCEEECCS-SCCSC
T ss_pred CcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCC--cCCccCHhHccCCcccceeEecC-CcCcE
Confidence 44443333445666777777776665 222334566666666666666 23222223355566666666664 55555
Q ss_pred ccccccccccCCCCceEEEEecccCCCCChhhhcCCCCCcEEEeecCCC
Q 037018 529 LSRMVLSEYQFPPCLTQLSLSNTQLMEDPMPALEKLPHLEVLKLKQNSY 577 (663)
Q Consensus 529 lp~~~~~l~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~ 577 (663)
+|.. .+.. +++|+.|++++|.++......+..+++|+.|++++|.+
T Consensus 172 ~~~~--~~~~-l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 172 VPEG--AFDK-LTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp CCTT--TTTT-CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred eChh--Hhcc-CCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCe
Confidence 5431 2444 56666666666665544444555666666666665544
No 77
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.76 E-value=1.6e-19 Score=202.49 Aligned_cols=321 Identities=12% Similarity=0.074 Sum_probs=187.9
Q ss_pred CceeEEEEEeccccccccccc--CCCcccEEEeecCccccccccchhHHhcCCCcccEEEecCCcCcc-----cCccCCC
Q 037018 321 ANVKRCFILEDLIDEFISLEH--SDMYLQSFLNHTLESDRLALIDCENFCKKFKHLRVLNLGSAILYQ-----YPPGLEN 393 (663)
Q Consensus 321 ~~~r~lsi~~~~~~~~~~~~~--~~~~lr~L~l~~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~l~~-----lp~~~~~ 393 (663)
.+++++.+..+.+.+...... .+++++.|.+.++.... ...++.+..++++|++|++++|.++. ++.....
T Consensus 105 ~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~--~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~ 182 (594)
T 2p1m_B 105 TWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFS--TDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDT 182 (594)
T ss_dssp TTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEE--HHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTT
T ss_pred CCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCC--HHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhc
Confidence 467788887765433221111 17899999998884321 22246665789999999999988652 3333457
Q ss_pred CCCcCeEeccCCC--Cc--cchhhhcccccccEeeccCC-cccccchhhhcCcCCcEEEccCCCC---------------
Q 037018 394 LFHLKYLKLNIPS--LN--CLPSLLCTLLNLQTLEMPAS-YIDHSPEGIWMMQKLMHLNFGSINL--------------- 453 (663)
Q Consensus 394 l~~L~~L~L~~~~--i~--~lp~~i~~L~~L~~L~L~~~-~l~~lp~~l~~l~~L~~L~l~~~~~--------------- 453 (663)
+++|++|++++|. +. .++..+..+++|++|++++| .+..+|..+..+++|++|+++.+..
T Consensus 183 ~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~ 262 (594)
T 2p1m_B 183 YTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALS 262 (594)
T ss_dssp CCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHH
T ss_pred CCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHh
Confidence 7899999999886 32 34444556789999999988 6666777778888888887652110
Q ss_pred ---------------CCCCCCCcCCCCCCcEeeCcCCC---CCChhhcCCCCCccEEEeecCCCccccchhhhhcCCCCC
Q 037018 454 ---------------PAPPKNYSSSLKNLIFISSLNPS---SCTPDILGRLPNVQTLRISGDLSHYHSGVSKSLCELHKL 515 (663)
Q Consensus 454 ---------------~~~~~~~l~~l~~L~~L~l~~~~---~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L 515 (663)
...++..+..+++|++|++.+|. ......+..+++|+.|++.+| .....+......+++|
T Consensus 263 ~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~--~~~~~l~~l~~~~~~L 340 (594)
T 2p1m_B 263 GCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY--IEDAGLEVLASTCKDL 340 (594)
T ss_dssp TCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG--GHHHHHHHHHHHCTTC
T ss_pred cCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc--cCHHHHHHHHHhCCCC
Confidence 01122222356788888888776 122334567788888888876 2222333333346677
Q ss_pred CEEEEee--------cCcccc--ccccccccccCCCCceEEEEecccCCCCChhh-------------------------
Q 037018 516 ECLQLVH--------EGRMWQ--LSRMVLSEYQFPPCLTQLSLSNTQLMEDPMPA------------------------- 560 (663)
Q Consensus 516 ~~L~l~~--------~~~l~~--lp~~~~~l~~~l~~L~~L~L~~~~l~~~~~~~------------------------- 560 (663)
++|++.+ ++.++. +.. .... +++|+.|.+.++.++...+..
T Consensus 341 ~~L~L~~~~~~g~~~~~~l~~~~l~~---l~~~-~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~ 416 (594)
T 2p1m_B 341 RELRVFPSEPFVMEPNVALTEQGLVS---VSMG-CPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLT 416 (594)
T ss_dssp CEEEEECSCTTCSSCSSCCCHHHHHH---HHHH-CTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTT
T ss_pred CEEEEecCcccccccCCCCCHHHHHH---HHHh-chhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCccccc
Confidence 7777732 222221 110 1112 344444444333333222222
Q ss_pred -----------hcCCCCCcEEEeecCCCCCceeeecCCCCCCcccEEEccCCCCccccccc-cccccccceEEeecCCCC
Q 037018 561 -----------LEKLPHLEVLKLKQNSYSERKLACVGSGSFPQLKILHLKSMLWLEEWTMG-AGAMPKLESLIVNPCAYL 628 (663)
Q Consensus 561 -----------l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~-~~~l~~L~~L~l~~c~~l 628 (663)
+..+++|+.|++++ .+++..+... ...+++|+.|+|++|......... ..++++|+.|++++|+..
T Consensus 417 ~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l-~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~ 494 (594)
T 2p1m_B 417 LEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYI-GTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFG 494 (594)
T ss_dssp CCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHH-HHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCC
T ss_pred CCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHH-HHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCc
Confidence 34455555555543 3332222221 123677888888876532222222 256899999999999873
Q ss_pred CCC-ccccCCCCCCCEEEecCCCH
Q 037018 629 RKL-PEELWCIKSLCKLELHWPQP 651 (663)
Q Consensus 629 ~~l-~~~l~~l~sL~~L~l~~c~~ 651 (663)
... ...+..+++|+.|++++|+.
T Consensus 495 ~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 495 DKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp HHHHHHTGGGGGGSSEEEEESSCC
T ss_pred HHHHHHHHHhCCCCCEEeeeCCCC
Confidence 322 22445688999999999984
No 78
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.76 E-value=2.3e-18 Score=187.58 Aligned_cols=233 Identities=12% Similarity=0.053 Sum_probs=144.7
Q ss_pred CCCcCeEeccCCCCccch-hhhcccccccEeeccCCcccccchhhhcCcCCcEEEccCCCCCCCCCCCcCCCCCCcEeeC
Q 037018 394 LFHLKYLKLNIPSLNCLP-SLLCTLLNLQTLEMPASYIDHSPEGIWMMQKLMHLNFGSINLPAPPKNYSSSLKNLIFISS 472 (663)
Q Consensus 394 l~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 472 (663)
+++|++|+|++|.+..++ ..++.+++|++|++++|.+...++ +..+++|++|++++| ....+| ..++|+.|++
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N-~l~~l~----~~~~L~~L~L 106 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNN-YVQELL----VGPSIETLHA 106 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSS-EEEEEE----ECTTCCEEEC
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCC-cCCCCC----CCCCcCEEEC
Confidence 347888888888888664 678888888888888887765554 778888888888843 322222 2267777777
Q ss_pred cCCC-CCChhhcCCCCCccEEEeecCCCccccchhhhhcCCCCCCEEEEeecCcccc-ccccccccc-cCCCCceEEEEe
Q 037018 473 LNPS-SCTPDILGRLPNVQTLRISGDLSHYHSGVSKSLCELHKLECLQLVHEGRMWQ-LSRMVLSEY-QFPPCLTQLSLS 549 (663)
Q Consensus 473 ~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~-lp~~~~~l~-~~l~~L~~L~L~ 549 (663)
++|. ...+. ..+++|+.|++++| ......+..+..+++|+.|++++ +.++. .|. .+. . +++|+.|+++
T Consensus 107 ~~N~l~~~~~--~~l~~L~~L~L~~N--~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~---~l~~~-l~~L~~L~Ls 177 (487)
T 3oja_A 107 ANNNISRVSC--SRGQGKKNIYLANN--KITMLRDLDEGCRSRVQYLDLKL-NEIDTVNFA---ELAAS-SDTLEHLNLQ 177 (487)
T ss_dssp CSSCCCCEEE--CCCSSCEEEECCSS--CCCSGGGBCGGGGSSEEEEECTT-SCCCEEEGG---GGGGG-TTTCCEEECT
T ss_pred cCCcCCCCCc--cccCCCCEEECCCC--CCCCCCchhhcCCCCCCEEECCC-CCCCCcChH---HHhhh-CCcccEEecC
Confidence 7766 33222 24566777777776 34444455566666777777765 55543 333 343 4 6667777777
Q ss_pred cccCCCCChhhhcCCCCCcEEEeecCCCCCceeeecCCCCCCcccEEEccCCCCccccccccccccccceEEeecCCCC-
Q 037018 550 NTQLMEDPMPALEKLPHLEVLKLKQNSYSERKLACVGSGSFPQLKILHLKSMLWLEEWTMGAGAMPKLESLIVNPCAYL- 628 (663)
Q Consensus 550 ~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l- 628 (663)
+|.++.. +....+++|+.|+|++|.+++..+. +..+++|+.|+|++| .+..+|..+..+++|+.|++++|+..
T Consensus 178 ~N~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~---~~~l~~L~~L~Ls~N-~l~~lp~~l~~l~~L~~L~l~~N~l~c 251 (487)
T 3oja_A 178 YNFIYDV--KGQVVFAKLKTLDLSSNKLAFMGPE---FQSAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLRGNGFHC 251 (487)
T ss_dssp TSCCCEE--ECCCCCTTCCEEECCSSCCCEECGG---GGGGTTCSEEECTTS-CCCEECTTCCCCTTCCEEECTTCCBCH
T ss_pred CCccccc--cccccCCCCCEEECCCCCCCCCCHh---HcCCCCccEEEecCC-cCcccchhhccCCCCCEEEcCCCCCcC
Confidence 7665433 2333466677777776666653322 345666777777763 45566666666667777777766654
Q ss_pred CCCccccCCCCCCCEEEec
Q 037018 629 RKLPEELWCIKSLCKLELH 647 (663)
Q Consensus 629 ~~l~~~l~~l~sL~~L~l~ 647 (663)
..+|..+..+++|+.+++.
T Consensus 252 ~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 252 GTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp HHHHHHHTTCHHHHHHHHH
T ss_pred cchHHHHHhCCCCcEEecc
Confidence 3445555556666555553
No 79
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.76 E-value=1.4e-19 Score=187.79 Aligned_cols=254 Identities=16% Similarity=0.155 Sum_probs=145.6
Q ss_pred cccEEEeecCccccccccchhHHhcCC--CcccEEEecCCcCcccCccCCCCCCcCeEeccCCCCcc--chhhhcccccc
Q 037018 345 YLQSFLNHTLESDRLALIDCENFCKKF--KHLRVLNLGSAILYQYPPGLENLFHLKYLKLNIPSLNC--LPSLLCTLLNL 420 (663)
Q Consensus 345 ~lr~L~l~~~~~~~~~~~~l~~~~~~l--~~Lr~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~--lp~~i~~L~~L 420 (663)
..+.+.+.++... +..+..+ ++++.|+++++.+...+..+..+++|++|++++|.+.. +|..+..+++|
T Consensus 48 ~~~~l~l~~~~~~-------~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L 120 (336)
T 2ast_B 48 LWQTLDLTGKNLH-------PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKL 120 (336)
T ss_dssp TSSEEECTTCBCC-------HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCC
T ss_pred hheeeccccccCC-------HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCC
Confidence 3566676665443 3333555 77888888888777555556677888888888887762 67777778888
Q ss_pred cEeeccCCccc-ccchhhhcCcCCcEEEccCCCCCCCCCCCcCCCCCCcEeeCcCCCCCChhhcCCCCCccEEEeecCCC
Q 037018 421 QTLEMPASYID-HSPEGIWMMQKLMHLNFGSINLPAPPKNYSSSLKNLIFISSLNPSSCTPDILGRLPNVQTLRISGDLS 499 (663)
Q Consensus 421 ~~L~L~~~~l~-~lp~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~l~~L~~L~l~~~~~ 499 (663)
++|++++|.+. ..+..+..+++|++|++++|..... ..++..+..+++|++|++++|..
T Consensus 121 ~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~--------------------~~l~~~~~~~~~L~~L~l~~~~~ 180 (336)
T 2ast_B 121 QNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSE--------------------FALQTLLSSCSRLDELNLSWCFD 180 (336)
T ss_dssp SEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCH--------------------HHHHHHHHHCTTCCEEECCCCTT
T ss_pred CEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCH--------------------HHHHHHHhcCCCCCEEcCCCCCC
Confidence 88888887554 4556677777777777773311110 01223344455555555555510
Q ss_pred ccccchhhhhcCCC-CCCEEEEeecC-cc--ccccccccccccCCCCceEEEEeccc-CCCCChhhhcCCCCCcEEEeec
Q 037018 500 HYHSGVSKSLCELH-KLECLQLVHEG-RM--WQLSRMVLSEYQFPPCLTQLSLSNTQ-LMEDPMPALEKLPHLEVLKLKQ 574 (663)
Q Consensus 500 ~~~~~~~~~l~~l~-~L~~L~l~~~~-~l--~~lp~~~~~l~~~l~~L~~L~L~~~~-l~~~~~~~l~~l~~L~~L~L~~ 574 (663)
.....++..+..++ +|++|++++|. .+ ..+|. .+.. +++|+.|++++|. +++..+..+..+++|+.|++++
T Consensus 181 l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~---~~~~-~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~ 256 (336)
T 2ast_B 181 FTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLST---LVRR-CPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSR 256 (336)
T ss_dssp CCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHH---HHHH-CTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTT
T ss_pred cChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHH---HHhh-CCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCC
Confidence 11112444455566 66666666532 23 23454 4455 6667777777666 4555555666677777777776
Q ss_pred CC-CCCceeeecCCCCCCcccEEEccCCCCccccccccccc-cccceEEeecCCCCCCCcccc
Q 037018 575 NS-YSERKLACVGSGSFPQLKILHLKSMLWLEEWTMGAGAM-PKLESLIVNPCAYLRKLPEEL 635 (663)
Q Consensus 575 ~~-~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~l-~~L~~L~l~~c~~l~~l~~~l 635 (663)
|. +....... +..+++|+.|++++| +.. ..+..+ .+|+.|++++|......|..+
T Consensus 257 ~~~~~~~~~~~--l~~~~~L~~L~l~~~--i~~--~~~~~l~~~l~~L~l~~n~l~~~~~~~~ 313 (336)
T 2ast_B 257 CYDIIPETLLE--LGEIPTLKTLQVFGI--VPD--GTLQLLKEALPHLQINCSHFTTIARPTI 313 (336)
T ss_dssp CTTCCGGGGGG--GGGCTTCCEEECTTS--SCT--TCHHHHHHHSTTSEESCCCSCCTTCSSC
T ss_pred CCCCCHHHHHH--HhcCCCCCEEeccCc--cCH--HHHHHHHhhCcceEEecccCccccCCcc
Confidence 63 22222211 455777777777776 211 012222 235556676666555555443
No 80
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.74 E-value=1.9e-17 Score=166.32 Aligned_cols=206 Identities=17% Similarity=0.180 Sum_probs=100.9
Q ss_pred CCCcCeEeccCCCCccchhhhcccccccEeeccCCcccccchhhhcCcCCcEEEccCCCCCCCCCCCcCCCCCCcEeeCc
Q 037018 394 LFHLKYLKLNIPSLNCLPSLLCTLLNLQTLEMPASYIDHSPEGIWMMQKLMHLNFGSINLPAPPKNYSSSLKNLIFISSL 473 (663)
Q Consensus 394 l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 473 (663)
+++|+.|+++++.+..++ .++.+++|++|++++|.+..++ .+..+++|++|++++|.+....+..++.+++|++|++.
T Consensus 40 l~~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 117 (272)
T 3rfs_A 40 LNSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLV 117 (272)
T ss_dssp HTTCCEEECTTSCCCCCT-TGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred ccceeeeeeCCCCccccc-ccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECC
Confidence 444444444444444433 2444444555555444444432 34444555555554222222222233444444444444
Q ss_pred CCC-CC-ChhhcCCCCCccEEEeecCCCccccchhhhhcCCCCCCEEEEeecCccccccccccccccCCCCceEEEEecc
Q 037018 474 NPS-SC-TPDILGRLPNVQTLRISGDLSHYHSGVSKSLCELHKLECLQLVHEGRMWQLSRMVLSEYQFPPCLTQLSLSNT 551 (663)
Q Consensus 474 ~~~-~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~lp~~~~~l~~~l~~L~~L~L~~~ 551 (663)
+|. .. .+..++.+++|+.|++++| ......+..+..+++|+.|++++ +.++.+|.. .+.. +++|+.|++++|
T Consensus 118 ~n~l~~~~~~~~~~l~~L~~L~L~~n--~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~--~~~~-l~~L~~L~L~~N 191 (272)
T 3rfs_A 118 ENQLQSLPDGVFDKLTNLTYLNLAHN--QLQSLPKGVFDKLTNLTELDLSY-NQLQSLPEG--VFDK-LTQLKDLRLYQN 191 (272)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSS--CCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTT--TTTT-CTTCCEEECCSS
T ss_pred CCcCCccCHHHhccCCCCCEEECCCC--ccCccCHHHhccCccCCEEECCC-CCcCccCHH--HhcC-CccCCEEECCCC
Confidence 444 21 1223455555555555555 22222233345556666666664 455554431 2344 666666666666
Q ss_pred cCCCCChhhhcCCCCCcEEEeecCCCCCceeeecCCCCCCcccEEEccCCCCccccccccccccc
Q 037018 552 QLMEDPMPALEKLPHLEVLKLKQNSYSERKLACVGSGSFPQLKILHLKSMLWLEEWTMGAGAMPK 616 (663)
Q Consensus 552 ~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~l~~ 616 (663)
.+.+..+..+..+++|+.|++++|.+. +.+++|+.|.++.+.....+|..++.++.
T Consensus 192 ~l~~~~~~~~~~l~~L~~L~l~~N~~~---------~~~~~l~~l~~~~n~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 192 QLKSVPDGVFDRLTSLQYIWLHDNPWD---------CTCPGIRYLSEWINKHSGVVRNSAGSVAP 247 (272)
T ss_dssp CCSCCCTTTTTTCTTCCEEECCSSCBC---------CCTTTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred cCCccCHHHHhCCcCCCEEEccCCCcc---------ccCcHHHHHHHHHHhCCCcccCcccccCC
Confidence 665555555666666666666666432 24555666666654444455555554443
No 81
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.74 E-value=5.3e-17 Score=162.82 Aligned_cols=197 Identities=23% Similarity=0.272 Sum_probs=152.2
Q ss_pred CCcCeEeccCCCCccchhhhcccccccEeeccCCcccccch-hhhcCcCCcEEEccCCCCCCCCCC-CcCCCCCCcEeeC
Q 037018 395 FHLKYLKLNIPSLNCLPSLLCTLLNLQTLEMPASYIDHSPE-GIWMMQKLMHLNFGSINLPAPPKN-YSSSLKNLIFISS 472 (663)
Q Consensus 395 ~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~-~l~~l~~L~~L~l~~~~~~~~~~~-~l~~l~~L~~L~l 472 (663)
.++++++++++.++.+|..+. .+|+.|++++|.+..+|. .+..+++|++|++++|.+. .+|. .+..+++|++|++
T Consensus 16 ~~~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l 92 (270)
T 2o6q_A 16 NNKNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWV 92 (270)
T ss_dssp TTTTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCS-CCCTTTTSSCTTCCEEEC
T ss_pred CCCCEEEccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccC-eeChhhhcCCCCCCEEEC
Confidence 367899999999999987664 689999999998888875 5889999999999944444 4444 4578899999999
Q ss_pred cCCC-CCCh-hhcCCCCCccEEEeecCCCccccchhhhhcCCCCCCEEEEeecCccccccccccccccCCCCceEEEEec
Q 037018 473 LNPS-SCTP-DILGRLPNVQTLRISGDLSHYHSGVSKSLCELHKLECLQLVHEGRMWQLSRMVLSEYQFPPCLTQLSLSN 550 (663)
Q Consensus 473 ~~~~-~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~lp~~~~~l~~~l~~L~~L~L~~ 550 (663)
.++. ..++ ..+..+++|+.|++++| ......+..+..+++|++|++++ +.++.+|.. .+.. +++|+.|++++
T Consensus 93 ~~n~l~~~~~~~~~~l~~L~~L~l~~n--~l~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~--~~~~-l~~L~~L~L~~ 166 (270)
T 2o6q_A 93 TDNKLQALPIGVFDQLVNLAELRLDRN--QLKSLPPRVFDSLTKLTYLSLGY-NELQSLPKG--VFDK-LTSLKELRLYN 166 (270)
T ss_dssp CSSCCCCCCTTTTTTCSSCCEEECCSS--CCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTT--TTTT-CTTCCEEECCS
T ss_pred CCCcCCcCCHhHcccccCCCEEECCCC--ccCeeCHHHhCcCcCCCEEECCC-CcCCccCHh--HccC-CcccceeEecC
Confidence 9888 4333 45688889999999888 34444455677888899999986 777777751 2566 88888888888
Q ss_pred ccCCCCChhhhcCCCCCcEEEeecCCCCCceeeecCCCCCCcccEEEccCCC
Q 037018 551 TQLMEDPMPALEKLPHLEVLKLKQNSYSERKLACVGSGSFPQLKILHLKSML 602 (663)
Q Consensus 551 ~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~ 602 (663)
|.+.......+..+++|+.|++++|.+....... +..+++|+.|+|++|+
T Consensus 167 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~--~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 167 NQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGA--FDSLEKLKMLQLQENP 216 (270)
T ss_dssp SCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTT--TTTCTTCCEEECCSSC
T ss_pred CcCcEeChhHhccCCCcCEEECCCCcCCcCCHHH--hccccCCCEEEecCCC
Confidence 8887766667888888888888888777544332 5677888888888864
No 82
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.73 E-value=1.7e-17 Score=166.95 Aligned_cols=214 Identities=19% Similarity=0.197 Sum_probs=128.3
Q ss_pred EEEecCCcCcccCccCCCCCCcCeEeccCCCCccchh-hhcccccccEeeccCCcccccch-hhhcCcCCcEEEccCCCC
Q 037018 376 VLNLGSAILYQYPPGLENLFHLKYLKLNIPSLNCLPS-LLCTLLNLQTLEMPASYIDHSPE-GIWMMQKLMHLNFGSINL 453 (663)
Q Consensus 376 ~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~l~~lp~-~l~~l~~L~~L~l~~~~~ 453 (663)
..+..+..+..+|..+. ++|++|++++|.++.++. .++++++|++|++++|.+..++. .+..+++|++|++++|.+
T Consensus 11 ~~~c~~~~l~~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 88 (276)
T 2z62_A 11 TYQCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88 (276)
T ss_dssp EEECTTSCCSSCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred eEEecCCCccccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCcc
Confidence 34555666777887664 579999999999997765 78889999999999998877765 578889999999985555
Q ss_pred CCCCCCCcCCCCCCcEeeCcCCC-CCCh-hhcCCCCCccEEEeecCCCcccc-chhhhhcCCCCCCEEEEeecCcccccc
Q 037018 454 PAPPKNYSSSLKNLIFISSLNPS-SCTP-DILGRLPNVQTLRISGDLSHYHS-GVSKSLCELHKLECLQLVHEGRMWQLS 530 (663)
Q Consensus 454 ~~~~~~~l~~l~~L~~L~l~~~~-~~~~-~~l~~l~~L~~L~l~~~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~l~~lp 530 (663)
....+..+..+++|++|++.++. ...+ ..++.+++|+.|++++|. ... .++..+..+++|++|++++ +.++.++
T Consensus 89 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~--l~~~~l~~~~~~l~~L~~L~Ls~-N~l~~~~ 165 (276)
T 2z62_A 89 QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL--IQSFKLPEYFSNLTNLEHLDLSS-NKIQSIY 165 (276)
T ss_dssp CEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSC--CCCCCCCGGGGGCTTCCEEECCS-SCCCEEC
T ss_pred CccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCc--cceecCchhhccCCCCCEEECCC-CCCCcCC
Confidence 55555667777778888777766 3322 246666677777776662 222 2345555566666666664 4454443
Q ss_pred ccccccccCCCCce----EEEEecccCCCCChhhhcCCCCCcEEEeecCCCCCceeeecCCCCCCcccEEEccC
Q 037018 531 RMVLSEYQFPPCLT----QLSLSNTQLMEDPMPALEKLPHLEVLKLKQNSYSERKLACVGSGSFPQLKILHLKS 600 (663)
Q Consensus 531 ~~~~~l~~~l~~L~----~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~ 600 (663)
.. .+.. +++|+ .|++++|.+.......+ ...+|+.|++++|.+.+..... +..+++|+.|+|++
T Consensus 166 ~~--~~~~-l~~L~~l~l~L~ls~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~--~~~l~~L~~L~l~~ 233 (276)
T 2z62_A 166 CT--DLRV-LHQMPLLNLSLDLSLNPMNFIQPGAF-KEIRLKELALDTNQLKSVPDGI--FDRLTSLQKIWLHT 233 (276)
T ss_dssp GG--GGHH-HHTCTTCCEEEECCSSCCCEECTTSS-CSCCEEEEECCSSCCSCCCTTT--TTTCCSCCEEECCS
T ss_pred HH--Hhhh-hhhccccceeeecCCCcccccCcccc-CCCcccEEECCCCceeecCHhH--hcccccccEEEccC
Confidence 21 2222 33333 45555555433222222 2224555555555444322211 23444555555554
No 83
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.73 E-value=2.4e-19 Score=189.91 Aligned_cols=209 Identities=14% Similarity=0.076 Sum_probs=119.8
Q ss_pred hhHHhcCCCcccEEEecCCcCc-c----cCccCCCCCCcCeEeccCCCCc----cchhhh-------cccccccEeeccC
Q 037018 364 CENFCKKFKHLRVLNLGSAILY-Q----YPPGLENLFHLKYLKLNIPSLN----CLPSLL-------CTLLNLQTLEMPA 427 (663)
Q Consensus 364 l~~~~~~l~~Lr~L~L~~~~l~-~----lp~~~~~l~~L~~L~L~~~~i~----~lp~~i-------~~L~~L~~L~L~~ 427 (663)
+...+..+++|++|++++|.+. . ++..+..+++|++|+|++|.+. .+|..+ ..+++|++|++++
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~ 103 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD 103 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence 3333388899999999999876 2 4455778899999999887554 334444 6788888899888
Q ss_pred Ccccc-----cchhhhcCcCCcEEEccCCCCCCC----CCCCcCCC---------CCCcEeeCcCCC-C--CCh---hhc
Q 037018 428 SYIDH-----SPEGIWMMQKLMHLNFGSINLPAP----PKNYSSSL---------KNLIFISSLNPS-S--CTP---DIL 483 (663)
Q Consensus 428 ~~l~~-----lp~~l~~l~~L~~L~l~~~~~~~~----~~~~l~~l---------~~L~~L~l~~~~-~--~~~---~~l 483 (663)
|.+.. +|..+..+++|++|++++|.+... ++..+..+ ++|++|++++|. . ..+ ..+
T Consensus 104 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l 183 (386)
T 2ca6_A 104 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF 183 (386)
T ss_dssp CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHH
Confidence 87655 677788888888888884433221 11122222 566666666554 1 112 234
Q ss_pred CCCCCccEEEeecCCCcccc-----chhhhhcCCCCCCEEEEeecCcc-----ccccccccccccCCCCceEEEEecccC
Q 037018 484 GRLPNVQTLRISGDLSHYHS-----GVSKSLCELHKLECLQLVHEGRM-----WQLSRMVLSEYQFPPCLTQLSLSNTQL 553 (663)
Q Consensus 484 ~~l~~L~~L~l~~~~~~~~~-----~~~~~l~~l~~L~~L~l~~~~~l-----~~lp~~~~~l~~~l~~L~~L~L~~~~l 553 (663)
..+++|+.|++++|. ... ..+..+..+++|+.|++++ +.+ ..+|. .+.. +++|+.|+|++|.+
T Consensus 184 ~~~~~L~~L~L~~n~--l~~~g~~~l~~~~l~~~~~L~~L~Ls~-n~l~~~g~~~l~~---~l~~-~~~L~~L~L~~n~i 256 (386)
T 2ca6_A 184 QSHRLLHTVKMVQNG--IRPEGIEHLLLEGLAYCQELKVLDLQD-NTFTHLGSSALAI---ALKS-WPNLRELGLNDCLL 256 (386)
T ss_dssp HHCTTCCEEECCSSC--CCHHHHHHHHHTTGGGCTTCCEEECCS-SCCHHHHHHHHHH---HGGG-CTTCCEEECTTCCC
T ss_pred HhCCCcCEEECcCCC--CCHhHHHHHHHHHhhcCCCccEEECcC-CCCCcHHHHHHHH---HHcc-CCCcCEEECCCCCC
Confidence 455555555555552 211 1122444555555555554 334 33444 4444 55555555555554
Q ss_pred CCC----Chhhh--cCCCCCcEEEeecCCCCC
Q 037018 554 MED----PMPAL--EKLPHLEVLKLKQNSYSE 579 (663)
Q Consensus 554 ~~~----~~~~l--~~l~~L~~L~L~~~~~~~ 579 (663)
+.. .+..+ +.+++|+.|+|++|.+.+
T Consensus 257 ~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~ 288 (386)
T 2ca6_A 257 SARGAAAVVDAFSKLENIGLQTLRLQYNEIEL 288 (386)
T ss_dssp CHHHHHHHHHHHHTCSSCCCCEEECCSSCCBH
T ss_pred chhhHHHHHHHHhhccCCCeEEEECcCCcCCH
Confidence 332 12233 225555555555555443
No 84
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.73 E-value=4.4e-19 Score=184.11 Aligned_cols=221 Identities=18% Similarity=0.142 Sum_probs=144.1
Q ss_pred cccEEEecCCcCcccCccCCCC--CCcCeEeccCCCCccchhhhcccccccEeeccCCcccc--cchhhhcCcCCcEEEc
Q 037018 373 HLRVLNLGSAILYQYPPGLENL--FHLKYLKLNIPSLNCLPSLLCTLLNLQTLEMPASYIDH--SPEGIWMMQKLMHLNF 448 (663)
Q Consensus 373 ~Lr~L~L~~~~l~~lp~~~~~l--~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~--lp~~l~~l~~L~~L~l 448 (663)
.++.++++++.+. +..+..+ +++++|++++|.+...+..+..+++|++|++++|.+.. +|..+..+++|++|++
T Consensus 48 ~~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L 125 (336)
T 2ast_B 48 LWQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSL 125 (336)
T ss_dssp TSSEEECTTCBCC--HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEEC
T ss_pred hheeeccccccCC--HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeC
Confidence 3555555555443 1223333 45555555555555444344455555555555553321 4444444555555555
Q ss_pred cCCCCCCCCCCCcCCCCCCcEeeCcCCC--CCChhhcCCCCCccEEEeecCCCccccchhhhhcCCCCCCEEEEeecCcc
Q 037018 449 GSINLPAPPKNYSSSLKNLIFISSLNPS--SCTPDILGRLPNVQTLRISGDLSHYHSGVSKSLCELHKLECLQLVHEGRM 526 (663)
Q Consensus 449 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l 526 (663)
+ +|. ...+..++.+++|++|++++|.......++..+..+++|++|++++|..+
T Consensus 126 ~------------------------~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l 181 (336)
T 2ast_B 126 E------------------------GLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDF 181 (336)
T ss_dssp T------------------------TCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTC
T ss_pred c------------------------CcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCc
Confidence 4 443 23455677788888888888731222246777888999999999985377
Q ss_pred cc--ccccccccccCCC-CceEEEEecc--cCC-CCChhhhcCCCCCcEEEeecCC-CCCceeeecCCCCCCcccEEEcc
Q 037018 527 WQ--LSRMVLSEYQFPP-CLTQLSLSNT--QLM-EDPMPALEKLPHLEVLKLKQNS-YSERKLACVGSGSFPQLKILHLK 599 (663)
Q Consensus 527 ~~--lp~~~~~l~~~l~-~L~~L~L~~~--~l~-~~~~~~l~~l~~L~~L~L~~~~-~~~~~~~~~~~~~~~~L~~L~L~ 599 (663)
+. ++. .+.. ++ +|++|++++| .++ ...+..+..+++|+.|++++|. +++..+.. +..+++|+.|+++
T Consensus 182 ~~~~~~~---~~~~-l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~--l~~l~~L~~L~l~ 255 (336)
T 2ast_B 182 TEKHVQV---AVAH-VSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQE--FFQLNYLQHLSLS 255 (336)
T ss_dssp CHHHHHH---HHHH-SCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGG--GGGCTTCCEEECT
T ss_pred ChHHHHH---HHHh-cccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHH--HhCCCCCCEeeCC
Confidence 63 666 6777 88 9999999999 444 2345567889999999999998 55544443 5788999999999
Q ss_pred CCCCcc-ccccccccccccceEEeecC
Q 037018 600 SMLWLE-EWTMGAGAMPKLESLIVNPC 625 (663)
Q Consensus 600 ~~~~l~-~l~~~~~~l~~L~~L~l~~c 625 (663)
+|..+. .....+..+++|+.|++++|
T Consensus 256 ~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 256 RCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp TCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred CCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 986443 22235778999999999999
No 85
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.73 E-value=6.8e-17 Score=163.63 Aligned_cols=199 Identities=19% Similarity=0.127 Sum_probs=142.6
Q ss_pred cCCCcccEEEecCCcCcccCccCCCCCCcCeEeccCCCCccc-hhhhcccccccEeeccCCcccccchhhhcCcCCcEEE
Q 037018 369 KKFKHLRVLNLGSAILYQYPPGLENLFHLKYLKLNIPSLNCL-PSLLCTLLNLQTLEMPASYIDHSPEGIWMMQKLMHLN 447 (663)
Q Consensus 369 ~~l~~Lr~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~ 447 (663)
.++++++.++++++.++.+|..+. +++++|++++|.+..+ |..+..+++|++|++++|.+..++.. ..+++|++|+
T Consensus 7 ~~l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~ 83 (290)
T 1p9a_G 7 SKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLD 83 (290)
T ss_dssp ECSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEE
T ss_pred cccCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEEE
Confidence 667788888888888888876664 6888888888888866 46678888888888888887777654 6788888888
Q ss_pred ccCCCCCCCCCCCcCCCCCCcEeeCcCCC-CCCh-hhcCCCCCccEEEeecCCCccccchhhhhcCCCCCCEEEEeecCc
Q 037018 448 FGSINLPAPPKNYSSSLKNLIFISSLNPS-SCTP-DILGRLPNVQTLRISGDLSHYHSGVSKSLCELHKLECLQLVHEGR 525 (663)
Q Consensus 448 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 525 (663)
++ ++....+|..+..+++|+.|+++++. ..++ ..++.+++|+.|++++| ......+..+..+++|+.|++++ +.
T Consensus 84 Ls-~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N--~l~~~~~~~~~~l~~L~~L~L~~-N~ 159 (290)
T 1p9a_G 84 LS-HNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN--ELKTLPPGLLTPTPKLEKLSLAN-NN 159 (290)
T ss_dssp CC-SSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTS--CCCCCCTTTTTTCTTCCEEECTT-SC
T ss_pred CC-CCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCC--CCCccChhhcccccCCCEEECCC-Cc
Confidence 88 45555677777778888888888777 3333 55777778888888777 33333334456677777777775 67
Q ss_pred cccccccccccccCCCCceEEEEecccCCCCChhhhcCCCCCcEEEeecCCCC
Q 037018 526 MWQLSRMVLSEYQFPPCLTQLSLSNTQLMEDPMPALEKLPHLEVLKLKQNSYS 578 (663)
Q Consensus 526 l~~lp~~~~~l~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~ 578 (663)
++.+|.. .+.. +++|+.|++++|.+. ..+..+..+++|+.|+|++|.+.
T Consensus 160 l~~l~~~--~~~~-l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 160 LTELPAG--LLNG-LENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp CSCCCTT--TTTT-CTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred CCccCHH--HhcC-cCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCcc
Confidence 7777651 2344 777777777777765 34455556667777777776653
No 86
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.73 E-value=1.1e-17 Score=164.73 Aligned_cols=194 Identities=19% Similarity=0.217 Sum_probs=88.6
Q ss_pred CcCeEeccCCCCccchh-hhcccccccEeeccCCc-ccccch-hhhcCcCCcEEEccC-CCCCCCCCCCcCCCCCCcEee
Q 037018 396 HLKYLKLNIPSLNCLPS-LLCTLLNLQTLEMPASY-IDHSPE-GIWMMQKLMHLNFGS-INLPAPPKNYSSSLKNLIFIS 471 (663)
Q Consensus 396 ~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~-l~~lp~-~l~~l~~L~~L~l~~-~~~~~~~~~~l~~l~~L~~L~ 471 (663)
+|++|++++|.++.+|. .++.+++|++|++++|. +..++. .+..+++|++|++++ |.+....+..+..+++|+.|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 55555555555555543 44555555555555553 555543 344555555555552 222222222334444444444
Q ss_pred CcCCC-CCChhhcCCCCCcc---EEEeecCCCccccchhhhhcCCCCCC-EEEEeecCccccccccccccccCCCCceEE
Q 037018 472 SLNPS-SCTPDILGRLPNVQ---TLRISGDLSHYHSGVSKSLCELHKLE-CLQLVHEGRMWQLSRMVLSEYQFPPCLTQL 546 (663)
Q Consensus 472 l~~~~-~~~~~~l~~l~~L~---~L~l~~~~~~~~~~~~~~l~~l~~L~-~L~l~~~~~l~~lp~~~~~l~~~l~~L~~L 546 (663)
+.++. ..++. ++.+++|+ .|++++|. ......+..+..+++|+ .|++++ +.++.+|. .... .++|+.|
T Consensus 112 l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~-~l~~i~~~~~~~l~~L~~~L~l~~-n~l~~i~~---~~~~-~~~L~~L 184 (239)
T 2xwt_C 112 IFNTGLKMFPD-LTKVYSTDIFFILEITDNP-YMTSIPVNAFQGLCNETLTLKLYN-NGFTSVQG---YAFN-GTKLDAV 184 (239)
T ss_dssp EEEECCCSCCC-CTTCCBCCSEEEEEEESCT-TCCEECTTTTTTTBSSEEEEECCS-CCCCEECT---TTTT-TCEEEEE
T ss_pred CCCCCCccccc-cccccccccccEEECCCCc-chhhcCcccccchhcceeEEEcCC-CCCcccCH---hhcC-CCCCCEE
Confidence 44433 22222 33344444 55555541 01111122344555555 555554 45555554 3333 3455555
Q ss_pred EEeccc-CCCCChhhhcCC-CCCcEEEeecCCCCCceeeecCCCCCCcccEEEccCC
Q 037018 547 SLSNTQ-LMEDPMPALEKL-PHLEVLKLKQNSYSERKLACVGSGSFPQLKILHLKSM 601 (663)
Q Consensus 547 ~L~~~~-l~~~~~~~l~~l-~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~ 601 (663)
++++|. +.......+..+ ++|+.|++++|.+.... ...|++|+.|.+.++
T Consensus 185 ~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~-----~~~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 185 YLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALP-----SKGLEHLKELIARNT 236 (239)
T ss_dssp ECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCC-----CTTCTTCSEEECTTC
T ss_pred EcCCCCCcccCCHHHhhccccCCcEEECCCCccccCC-----hhHhccCceeeccCc
Confidence 555553 443333444555 55555555555444321 124455555555443
No 87
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.72 E-value=5.4e-17 Score=165.99 Aligned_cols=192 Identities=20% Similarity=0.231 Sum_probs=158.5
Q ss_pred CCcccEEEeecCccccccccchhHHhcCCCcccEEEecCCcCcccCccCCCCCCcCeEeccCCCCccchhhhcccccccE
Q 037018 343 DMYLQSFLNHTLESDRLALIDCENFCKKFKHLRVLNLGSAILYQYPPGLENLFHLKYLKLNIPSLNCLPSLLCTLLNLQT 422 (663)
Q Consensus 343 ~~~lr~L~l~~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~ 422 (663)
+++++.|.+.++... .++.+ ..+++|++|++++|.+..++. +..+++|++|++++|.++.+| .++.+++|++
T Consensus 40 l~~L~~L~l~~~~i~-----~l~~~-~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~ 111 (308)
T 1h6u_A 40 LDGITTLSAFGTGVT-----TIEGV-QYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVS-AIAGLQSIKT 111 (308)
T ss_dssp HHTCCEEECTTSCCC-----CCTTG-GGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCE
T ss_pred cCCcCEEEeeCCCcc-----Cchhh-hccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCch-hhcCCCCCCE
Confidence 678888888888664 34555 889999999999999987776 889999999999999999887 6889999999
Q ss_pred eeccCCcccccchhhhcCcCCcEEEccCCCCCCCCCCCcCCCCCCcEeeCcCCC-CCChhhcCCCCCccEEEeecCCCcc
Q 037018 423 LEMPASYIDHSPEGIWMMQKLMHLNFGSINLPAPPKNYSSSLKNLIFISSLNPS-SCTPDILGRLPNVQTLRISGDLSHY 501 (663)
Q Consensus 423 L~L~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~ 501 (663)
|++++|.+..++. +..+++|++|+++ ++....++. ++.+++|+.|++.+|. ...+. +..+++|+.|++++|. .
T Consensus 112 L~l~~n~l~~~~~-l~~l~~L~~L~l~-~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~--l 185 (308)
T 1h6u_A 112 LDLTSTQITDVTP-LAGLSNLQVLYLD-LNQITNISP-LAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNK--I 185 (308)
T ss_dssp EECTTSCCCCCGG-GTTCTTCCEEECC-SSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC--C
T ss_pred EECCCCCCCCchh-hcCCCCCCEEECC-CCccCcCcc-ccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCCc--c
Confidence 9999998888875 8899999999999 444444444 8889999999999988 54444 8899999999999983 3
Q ss_pred ccchhhhhcCCCCCCEEEEeecCccccccccccccccCCCCceEEEEecccCCCC
Q 037018 502 HSGVSKSLCELHKLECLQLVHEGRMWQLSRMVLSEYQFPPCLTQLSLSNTQLMED 556 (663)
Q Consensus 502 ~~~~~~~l~~l~~L~~L~l~~~~~l~~lp~~~~~l~~~l~~L~~L~L~~~~l~~~ 556 (663)
..++. +..+++|++|++++ +.+..++ .+.. +++|+.|++++|.++..
T Consensus 186 -~~~~~-l~~l~~L~~L~L~~-N~l~~~~----~l~~-l~~L~~L~l~~N~i~~~ 232 (308)
T 1h6u_A 186 -SDISP-LASLPNLIEVHLKN-NQISDVS----PLAN-TSNLFIVTLTNQTITNQ 232 (308)
T ss_dssp -CCCGG-GGGCTTCCEEECTT-SCCCBCG----GGTT-CTTCCEEEEEEEEEECC
T ss_pred -CcChh-hcCCCCCCEEEccC-CccCccc----cccC-CCCCCEEEccCCeeecC
Confidence 23333 77899999999997 8888877 4667 89999999999987553
No 88
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.72 E-value=4.7e-19 Score=187.68 Aligned_cols=231 Identities=16% Similarity=0.116 Sum_probs=103.1
Q ss_pred CCcccEEEeecCccccccccchhHHhcCCCcccEEEecCCcCc----ccCccC-------CCCCCcCeEeccCCCCcc--
Q 037018 343 DMYLQSFLNHTLESDRLALIDCENFCKKFKHLRVLNLGSAILY----QYPPGL-------ENLFHLKYLKLNIPSLNC-- 409 (663)
Q Consensus 343 ~~~lr~L~l~~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~l~----~lp~~~-------~~l~~L~~L~L~~~~i~~-- 409 (663)
.++++.|.+.++.........+...+.++++|++|++++|.+. .+|..+ ..+++|++|+|++|.+..
T Consensus 31 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~ 110 (386)
T 2ca6_A 31 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTA 110 (386)
T ss_dssp CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTT
T ss_pred CCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHH
Confidence 4455555555554432111112222245555555555554322 222222 445555555555555543
Q ss_pred ---chhhhcccccccEeeccCCcccc-----cchhhhcC---------cCCcEEEccCCCCC-CCCC---CCcCCCCCCc
Q 037018 410 ---LPSLLCTLLNLQTLEMPASYIDH-----SPEGIWMM---------QKLMHLNFGSINLP-APPK---NYSSSLKNLI 468 (663)
Q Consensus 410 ---lp~~i~~L~~L~~L~L~~~~l~~-----lp~~l~~l---------~~L~~L~l~~~~~~-~~~~---~~l~~l~~L~ 468 (663)
+|..+..+++|++|++++|.+.. ++..+..+ ++|++|++++|.+. ..++ ..+..+++|+
T Consensus 111 ~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~ 190 (386)
T 2ca6_A 111 QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLH 190 (386)
T ss_dssp HHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCC
T ss_pred HHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcC
Confidence 44455555555555555554431 22222233 55555555533322 2222 2333445555
Q ss_pred EeeCcCCC-C--C---Chh-hcCCCCCccEEEeecCCCccc----cchhhhhcCCCCCCEEEEeecCcccc-----cccc
Q 037018 469 FISSLNPS-S--C---TPD-ILGRLPNVQTLRISGDLSHYH----SGVSKSLCELHKLECLQLVHEGRMWQ-----LSRM 532 (663)
Q Consensus 469 ~L~l~~~~-~--~---~~~-~l~~l~~L~~L~l~~~~~~~~----~~~~~~l~~l~~L~~L~l~~~~~l~~-----lp~~ 532 (663)
+|++.+|. . . +.. .+..+++|+.|++++|. .. ..++..+..+++|++|++++ +.++. +|.
T Consensus 191 ~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~--l~~~g~~~l~~~l~~~~~L~~L~L~~-n~i~~~~~~~l~~- 266 (386)
T 2ca6_A 191 TVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNT--FTHLGSSALAIALKSWPNLRELGLND-CLLSARGAAAVVD- 266 (386)
T ss_dssp EEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSC--CHHHHHHHHHHHGGGCTTCCEEECTT-CCCCHHHHHHHHH-
T ss_pred EEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCC--CCcHHHHHHHHHHccCCCcCEEECCC-CCCchhhHHHHHH-
Confidence 55555554 1 0 122 44455555555555552 21 33444455555555555554 33332 232
Q ss_pred cccc--ccCCCCceEEEEecccCCC----CChhhh-cCCCCCcEEEeecCCCCCc
Q 037018 533 VLSE--YQFPPCLTQLSLSNTQLME----DPMPAL-EKLPHLEVLKLKQNSYSER 580 (663)
Q Consensus 533 ~~~l--~~~l~~L~~L~L~~~~l~~----~~~~~l-~~l~~L~~L~L~~~~~~~~ 580 (663)
.+ .. +++|+.|+|++|.++. ..+..+ .++++|+.|++++|.+++.
T Consensus 267 --~l~~~~-~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~ 318 (386)
T 2ca6_A 267 --AFSKLE-NIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEE 318 (386)
T ss_dssp --HHHTCS-SCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTT
T ss_pred --HHhhcc-CCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcc
Confidence 22 22 4555555555555443 133333 3455555555555555443
No 89
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.72 E-value=2.6e-17 Score=165.31 Aligned_cols=226 Identities=19% Similarity=0.187 Sum_probs=180.1
Q ss_pred CcCeEeccCCCCccchhhhcccccccEeeccCCcccccchhhhcCcCCcEEEccCCCCCCCCCCCcCCCCCCcEeeCcCC
Q 037018 396 HLKYLKLNIPSLNCLPSLLCTLLNLQTLEMPASYIDHSPEGIWMMQKLMHLNFGSINLPAPPKNYSSSLKNLIFISSLNP 475 (663)
Q Consensus 396 ~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 475 (663)
++..+++..+.+.... ....+++|+.|++++|.+..++ .+..+++|++|++++|.+ ..+ ..+..+++|++|++.++
T Consensus 20 ~l~~l~l~~~~~~~~~-~~~~l~~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~l-~~~-~~l~~l~~L~~L~L~~n 95 (272)
T 3rfs_A 20 ETIKANLKKKSVTDAV-TQNELNSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNKL-HDI-SALKELTNLTYLILTGN 95 (272)
T ss_dssp HHHHHHHTCSCTTSEE-CHHHHTTCCEEECTTSCCCCCT-TGGGCTTCCEEECTTSCC-CCC-GGGTTCTTCCEEECTTS
T ss_pred HHHHHHhcCccccccc-ccccccceeeeeeCCCCccccc-ccccCCCCcEEECCCCCC-CCc-hhhcCCCCCCEEECCCC
Confidence 4455566666655443 4567899999999999888876 588999999999995544 334 37889999999999999
Q ss_pred C-CC-ChhhcCCCCCccEEEeecCCCccccchhhhhcCCCCCCEEEEeecCccccccccccccccCCCCceEEEEecccC
Q 037018 476 S-SC-TPDILGRLPNVQTLRISGDLSHYHSGVSKSLCELHKLECLQLVHEGRMWQLSRMVLSEYQFPPCLTQLSLSNTQL 553 (663)
Q Consensus 476 ~-~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~lp~~~~~l~~~l~~L~~L~L~~~~l 553 (663)
. .. .+..++.+++|+.|++++| ......+..+..+++|++|++++ +.++.+|.. .+.. +++|+.|++++|.+
T Consensus 96 ~l~~~~~~~~~~l~~L~~L~L~~n--~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~--~~~~-l~~L~~L~l~~n~l 169 (272)
T 3rfs_A 96 QLQSLPNGVFDKLTNLKELVLVEN--QLQSLPDGVFDKLTNLTYLNLAH-NQLQSLPKG--VFDK-LTNLTELDLSYNQL 169 (272)
T ss_dssp CCCCCCTTTTTTCTTCCEEECTTS--CCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTT--TTTT-CTTCCEEECCSSCC
T ss_pred ccCccChhHhcCCcCCCEEECCCC--cCCccCHHHhccCCCCCEEECCC-CccCccCHH--Hhcc-CccCCEEECCCCCc
Confidence 8 43 4455789999999999999 45545555678899999999997 788887751 3567 99999999999999
Q ss_pred CCCChhhhcCCCCCcEEEeecCCCCCceeeecCCCCCCcccEEEccCCCCccccccccccccccceEEeecCCCCCCCcc
Q 037018 554 MEDPMPALEKLPHLEVLKLKQNSYSERKLACVGSGSFPQLKILHLKSMLWLEEWTMGAGAMPKLESLIVNPCAYLRKLPE 633 (663)
Q Consensus 554 ~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~ 633 (663)
+......++.+++|+.|++++|.+.+..+.. +..+++|+.|++++|+. .+.+|+|+.|+++.|.....+|.
T Consensus 170 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~--~~~l~~L~~L~l~~N~~-------~~~~~~l~~l~~~~n~~~g~ip~ 240 (272)
T 3rfs_A 170 QSLPEGVFDKLTQLKDLRLYQNQLKSVPDGV--FDRLTSLQYIWLHDNPW-------DCTCPGIRYLSEWINKHSGVVRN 240 (272)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCSCCCTTT--TTTCTTCCEEECCSSCB-------CCCTTTTHHHHHHHHHTGGGBBC
T ss_pred CccCHHHhcCCccCCEEECCCCcCCccCHHH--HhCCcCCCEEEccCCCc-------cccCcHHHHHHHHHHhCCCcccC
Confidence 8777777899999999999999988755433 57899999999999742 24578899999999988888887
Q ss_pred ccCCCCC
Q 037018 634 ELWCIKS 640 (663)
Q Consensus 634 ~l~~l~s 640 (663)
.+..++.
T Consensus 241 ~~~~~~~ 247 (272)
T 3rfs_A 241 SAGSVAP 247 (272)
T ss_dssp TTSCBCG
T ss_pred cccccCC
Confidence 7766554
No 90
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.72 E-value=4.9e-19 Score=198.58 Aligned_cols=300 Identities=14% Similarity=0.090 Sum_probs=175.5
Q ss_pred CCcccEEEeecCccccccccchhHHhcCCCcccEEEecCCc-CcccCccCCCCCCcCeEeccCC----------------
Q 037018 343 DMYLQSFLNHTLESDRLALIDCENFCKKFKHLRVLNLGSAI-LYQYPPGLENLFHLKYLKLNIP---------------- 405 (663)
Q Consensus 343 ~~~lr~L~l~~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~-l~~lp~~~~~l~~L~~L~L~~~---------------- 405 (663)
++++++|.+.++. ..+....+..+..++++|++|++++|. +..++..+..+++|++|++..+
T Consensus 183 ~~~L~~L~l~~~~-~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l 261 (594)
T 2p1m_B 183 YTSLVSLNISCLA-SEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVAL 261 (594)
T ss_dssp CCCCCEEECTTCC-SCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHH
T ss_pred CCcCcEEEecccC-CcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHH
Confidence 5566666666654 111122334444556667777666662 2234444444555555543322
Q ss_pred ---------------CCccchhhhcccccccEeeccCCcccc--cchhhhcCcCCcEEEccCCCCCC-CCCCCcCCCCCC
Q 037018 406 ---------------SLNCLPSLLCTLLNLQTLEMPASYIDH--SPEGIWMMQKLMHLNFGSINLPA-PPKNYSSSLKNL 467 (663)
Q Consensus 406 ---------------~i~~lp~~i~~L~~L~~L~L~~~~l~~--lp~~l~~l~~L~~L~l~~~~~~~-~~~~~l~~l~~L 467 (663)
....+|..+..+++|++|++++|.+.. ++..+..+++|++|++. ++... .++.....+++|
T Consensus 262 ~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~-~~~~~~~l~~l~~~~~~L 340 (594)
T 2p1m_B 262 SGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVL-DYIEDAGLEVLASTCKDL 340 (594)
T ss_dssp HTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTC
T ss_pred hcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCc-CccCHHHHHHHHHhCCCC
Confidence 222344444456677777777775432 22234567777777777 33211 111112246777
Q ss_pred cEeeCcCC--------CCC----ChhhcCCCCCccEEEeecCCCccccchhhhhc-CCCCCCEEEEe-----ecCccccc
Q 037018 468 IFISSLNP--------SSC----TPDILGRLPNVQTLRISGDLSHYHSGVSKSLC-ELHKLECLQLV-----HEGRMWQL 529 (663)
Q Consensus 468 ~~L~l~~~--------~~~----~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~-~l~~L~~L~l~-----~~~~l~~l 529 (663)
++|++..+ ... .......+++|+.|.+..+ .........+. .+++|+.|+++ +|+.++..
T Consensus 341 ~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~--~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~ 418 (594)
T 2p1m_B 341 RELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCR--QMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLE 418 (594)
T ss_dssp CEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEES--CCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCC
T ss_pred CEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcC--CcCHHHHHHHHhhCCCcceeEeecccCCCcccccCC
Confidence 77777432 111 1111234678888866655 33333334443 57899999998 45666643
Q ss_pred ccc--cc-ccccCCCCceEEEEecccCCCCChhhhcC-CCCCcEEEeecCCCCCceeeecCCCCCCcccEEEccCCCCcc
Q 037018 530 SRM--VL-SEYQFPPCLTQLSLSNTQLMEDPMPALEK-LPHLEVLKLKQNSYSERKLACVGSGSFPQLKILHLKSMLWLE 605 (663)
Q Consensus 530 p~~--~~-~l~~~l~~L~~L~L~~~~l~~~~~~~l~~-l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~ 605 (663)
|.+ +. .+.. +++|+.|++++ .+++..+..+.. +++|+.|++++|.+++..+... ..++++|+.|+|++|+...
T Consensus 419 ~~~~~~~~l~~~-~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l-~~~~~~L~~L~L~~n~~~~ 495 (594)
T 2p1m_B 419 PLDIGFGAIVEH-CKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHV-LSGCDSLRKLEIRDCPFGD 495 (594)
T ss_dssp CTHHHHHHHHHH-CTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHH-HHHCTTCCEEEEESCSCCH
T ss_pred chhhHHHHHHhh-CCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHH-HhcCCCcCEEECcCCCCcH
Confidence 310 00 2455 88999999977 555555555655 9999999999999876554432 3679999999999987632
Q ss_pred c-cccccccccccceEEeecCCCCCCCcccc-CCCCCCCEEEecCC
Q 037018 606 E-WTMGAGAMPKLESLIVNPCAYLRKLPEEL-WCIKSLCKLELHWP 649 (663)
Q Consensus 606 ~-l~~~~~~l~~L~~L~l~~c~~l~~l~~~l-~~l~sL~~L~l~~c 649 (663)
. +.....++++|+.|++++|+........+ ..+|.|+...+...
T Consensus 496 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~ 541 (594)
T 2p1m_B 496 KALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDER 541 (594)
T ss_dssp HHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSS
T ss_pred HHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCC
Confidence 2 22345679999999999998743222223 45678876666543
No 91
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.72 E-value=3.8e-17 Score=165.49 Aligned_cols=199 Identities=20% Similarity=0.141 Sum_probs=154.6
Q ss_pred CCCCCCcCeEeccCCCCccchhhhcccccccEeeccCCcccccc-hhhhcCcCCcEEEccCCCCCCCCCCCcCCCCCCcE
Q 037018 391 LENLFHLKYLKLNIPSLNCLPSLLCTLLNLQTLEMPASYIDHSP-EGIWMMQKLMHLNFGSINLPAPPKNYSSSLKNLIF 469 (663)
Q Consensus 391 ~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp-~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 469 (663)
++++++++.++++++.++.+|..+. ++++.|++++|.+..++ ..+..+++|++|++++| ....++.. +.+++|+.
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~-~~l~~L~~ 81 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA-ELTKLQVD-GTLPVLGT 81 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTS-CCCEEECC-SCCTTCCE
T ss_pred ccccCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCC-ccCcccCC-CCCCcCCE
Confidence 6678899999999999999997764 68999999999887774 56899999999999944 44444433 77888999
Q ss_pred eeCcCCC-CCChhhcCCCCCccEEEeecCCCccccchhhhhcCCCCCCEEEEeecCccccccccccccccCCCCceEEEE
Q 037018 470 ISSLNPS-SCTPDILGRLPNVQTLRISGDLSHYHSGVSKSLCELHKLECLQLVHEGRMWQLSRMVLSEYQFPPCLTQLSL 548 (663)
Q Consensus 470 L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~lp~~~~~l~~~l~~L~~L~L 548 (663)
|+++++. ..++..+..+++|+.|++++| ......+..+..+++|++|++++ +.++.+|.. .+.. +++|+.|++
T Consensus 82 L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N--~l~~l~~~~~~~l~~L~~L~L~~-N~l~~~~~~--~~~~-l~~L~~L~L 155 (290)
T 1p9a_G 82 LDLSHNQLQSLPLLGQTLPALTVLDVSFN--RLTSLPLGALRGLGELQELYLKG-NELKTLPPG--LLTP-TPKLEKLSL 155 (290)
T ss_dssp EECCSSCCSSCCCCTTTCTTCCEEECCSS--CCCCCCSSTTTTCTTCCEEECTT-SCCCCCCTT--TTTT-CTTCCEEEC
T ss_pred EECCCCcCCcCchhhccCCCCCEEECCCC--cCcccCHHHHcCCCCCCEEECCC-CCCCccChh--hccc-ccCCCEEEC
Confidence 9998888 777777788888999999888 34444445677888888888886 777777751 3455 888888888
Q ss_pred ecccCCCCChhhhcCCCCCcEEEeecCCCCCceeeecCCCCCCcccEEEccCCC
Q 037018 549 SNTQLMEDPMPALEKLPHLEVLKLKQNSYSERKLACVGSGSFPQLKILHLKSML 602 (663)
Q Consensus 549 ~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~ 602 (663)
++|.++......+..+++|+.|++++|.+...... ....++|+.|.|++|+
T Consensus 156 ~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~---~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 156 ANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKG---FFGSHLLPFAFLHGNP 206 (290)
T ss_dssp TTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTT---TTTTCCCSEEECCSCC
T ss_pred CCCcCCccCHHHhcCcCCCCEEECCCCcCCccChh---hcccccCCeEEeCCCC
Confidence 88888766666778888888888888887743322 3456688888888765
No 92
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.69 E-value=5.9e-17 Score=165.98 Aligned_cols=223 Identities=16% Similarity=0.166 Sum_probs=112.9
Q ss_pred CCcccEEEeecCccccccccchhHHhcCCCcccEEEecCCcCc-ccCccC--CCCCCcCeEeccCCCCccc-h----hhh
Q 037018 343 DMYLQSFLNHTLESDRLALIDCENFCKKFKHLRVLNLGSAILY-QYPPGL--ENLFHLKYLKLNIPSLNCL-P----SLL 414 (663)
Q Consensus 343 ~~~lr~L~l~~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~l~-~lp~~~--~~l~~L~~L~L~~~~i~~l-p----~~i 414 (663)
...++.+.+.+..........+..+ ..+++|++|++++|.+. ..|..+ +.+++|++|++++|.+... | ..+
T Consensus 63 ~~~l~~l~l~~~~~~~~~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~ 141 (310)
T 4glp_A 63 ALRVRRLTVGAAQVPAQLLVGALRV-LAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQ 141 (310)
T ss_dssp SCCCCEEEECSCCCBHHHHHHHHHH-HHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHT
T ss_pred hcceeEEEEeCCcCCHHHHHHHHHh-cccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHh
Confidence 3345666666554432111112222 34466888888888876 555555 7778888888888877631 1 233
Q ss_pred cccccccEeeccCCcccccc-hhhhcCcCCcEEEccCCCCCCC--C--CCCcCCCCCCcEeeCcCCC-CCChh----hcC
Q 037018 415 CTLLNLQTLEMPASYIDHSP-EGIWMMQKLMHLNFGSINLPAP--P--KNYSSSLKNLIFISSLNPS-SCTPD----ILG 484 (663)
Q Consensus 415 ~~L~~L~~L~L~~~~l~~lp-~~l~~l~~L~~L~l~~~~~~~~--~--~~~l~~l~~L~~L~l~~~~-~~~~~----~l~ 484 (663)
..+++|++|++++|.+..++ ..+..+++|++|++++|..... + +..++.+++|++|++++|. ...+. .++
T Consensus 142 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~ 221 (310)
T 4glp_A 142 WLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAA 221 (310)
T ss_dssp TBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHH
T ss_pred hhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHh
Confidence 45677777777777665554 3466677777777774433210 1 1223455555656555554 22222 124
Q ss_pred CCCCccEEEeecCCCccccchhhhhcCC---CCCCEEEEeecCccccccccccccccCCCCceEEEEecccCCCCChhhh
Q 037018 485 RLPNVQTLRISGDLSHYHSGVSKSLCEL---HKLECLQLVHEGRMWQLSRMVLSEYQFPPCLTQLSLSNTQLMEDPMPAL 561 (663)
Q Consensus 485 ~l~~L~~L~l~~~~~~~~~~~~~~l~~l---~~L~~L~l~~~~~l~~lp~~~~~l~~~l~~L~~L~L~~~~l~~~~~~~l 561 (663)
.+++|++|++++| ......|..+..+ ++|++|++++ +.++.+|. .+ +++|+.|++++|.+++. +.+
T Consensus 222 ~l~~L~~L~Ls~N--~l~~~~p~~~~~~~~~~~L~~L~Ls~-N~l~~lp~---~~---~~~L~~L~Ls~N~l~~~--~~~ 290 (310)
T 4glp_A 222 AGVQPHSLDLSHN--SLRATVNPSAPRCMWSSALNSLNLSF-AGLEQVPK---GL---PAKLRVLDLSSNRLNRA--PQP 290 (310)
T ss_dssp HTCCCSSEECTTS--CCCCCCCSCCSSCCCCTTCCCEECCS-SCCCSCCS---CC---CSCCSCEECCSCCCCSC--CCT
T ss_pred cCCCCCEEECCCC--CCCccchhhHHhccCcCcCCEEECCC-CCCCchhh---hh---cCCCCEEECCCCcCCCC--chh
Confidence 4455555555554 2222223333333 3455555543 44444443 22 23445555554444322 113
Q ss_pred cCCCCCcEEEeecCCC
Q 037018 562 EKLPHLEVLKLKQNSY 577 (663)
Q Consensus 562 ~~l~~L~~L~L~~~~~ 577 (663)
..+++|+.|++++|.+
T Consensus 291 ~~l~~L~~L~L~~N~l 306 (310)
T 4glp_A 291 DELPEVDNLTLDGNPF 306 (310)
T ss_dssp TSCCCCSCEECSSTTT
T ss_pred hhCCCccEEECcCCCC
Confidence 4444444444444444
No 93
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.68 E-value=3.4e-16 Score=163.15 Aligned_cols=235 Identities=17% Similarity=0.146 Sum_probs=165.9
Q ss_pred cEEEecCCcCcccCccCCCCCCcCeEeccCCCCccchh-hhcccccccEeeccCCcc-cccchh-hhcCcCCcEE-EccC
Q 037018 375 RVLNLGSAILYQYPPGLENLFHLKYLKLNIPSLNCLPS-LLCTLLNLQTLEMPASYI-DHSPEG-IWMMQKLMHL-NFGS 450 (663)
Q Consensus 375 r~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~l-~~lp~~-l~~l~~L~~L-~l~~ 450 (663)
++++.+++.++.+|..+ .+++++|+|++|.|+.+|. .|.++++|++|+|++|.+ +.+|.. |.++++|+++ .+..
T Consensus 12 ~~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~ 89 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89 (350)
T ss_dssp TEEEEESTTCCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred CEEEecCCCCCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence 56677777777777765 3578888888888888875 467888888888888854 455543 5677777654 3442
Q ss_pred CCCCCCCCCCcCCCCCCcEeeCcCCC-CCCh-hhcCCCCCccEEEeecCCCccccchh-hhhcCC-CCCCEEEEeecCcc
Q 037018 451 INLPAPPKNYSSSLKNLIFISSLNPS-SCTP-DILGRLPNVQTLRISGDLSHYHSGVS-KSLCEL-HKLECLQLVHEGRM 526 (663)
Q Consensus 451 ~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~-~~l~~l-~~L~~L~l~~~~~l 526 (663)
|.+....|..+..+++|+.|++.++. ...+ ..+....++..|++.++. ....++ ..+..+ ..++.|++++ +.+
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~--~i~~l~~~~f~~~~~~l~~L~L~~-N~i 166 (350)
T 4ay9_X 90 NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNI--NIHTIERNSFVGLSFESVILWLNK-NGI 166 (350)
T ss_dssp TTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCT--TCCEECTTSSTTSBSSCEEEECCS-SCC
T ss_pred CcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhcccc--ccccccccchhhcchhhhhhcccc-ccc
Confidence 33344445667788888888888776 3322 234455567778887652 333333 233333 4688899986 888
Q ss_pred ccccccccccccCCCCceEEEEec-ccCCCCChhhhcCCCCCcEEEeecCCCCCceeeecCCCCCCcccEEEccCCCCcc
Q 037018 527 WQLSRMVLSEYQFPPCLTQLSLSN-TQLMEDPMPALEKLPHLEVLKLKQNSYSERKLACVGSGSFPQLKILHLKSMLWLE 605 (663)
Q Consensus 527 ~~lp~~~~~l~~~l~~L~~L~L~~-~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~ 605 (663)
+.+|. .... ..+|+.|++.+ |.++......+.++++|+.|++++|.++... ...|.+|+.|.+.++..++
T Consensus 167 ~~i~~---~~f~-~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp-----~~~~~~L~~L~~l~~~~l~ 237 (350)
T 4ay9_X 167 QEIHN---SAFN-GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLP-----SYGLENLKKLRARSTYNLK 237 (350)
T ss_dssp CEECT---TSST-TEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCC-----SSSCTTCCEEECTTCTTCC
T ss_pred cCCCh---hhcc-ccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccC-----hhhhccchHhhhccCCCcC
Confidence 88887 6666 67899999875 5565555567889999999999988887543 3568889999888888888
Q ss_pred ccccccccccccceEEeec
Q 037018 606 EWTMGAGAMPKLESLIVNP 624 (663)
Q Consensus 606 ~l~~~~~~l~~L~~L~l~~ 624 (663)
.+|. +..+++|+.+++.+
T Consensus 238 ~lP~-l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 238 KLPT-LEKLVALMEASLTY 255 (350)
T ss_dssp CCCC-TTTCCSCCEEECSC
T ss_pred cCCC-chhCcChhhCcCCC
Confidence 8884 78889999998865
No 94
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.67 E-value=1.1e-16 Score=157.34 Aligned_cols=209 Identities=16% Similarity=0.146 Sum_probs=139.9
Q ss_pred CCCCccchhhhcccccccEeeccCCcccccch-hhhcCcCCcEEEccCCCCCCCCCCCcCCCCCCcEeeCcCCCCCChhh
Q 037018 404 IPSLNCLPSLLCTLLNLQTLEMPASYIDHSPE-GIWMMQKLMHLNFGSINLPAPPKNYSSSLKNLIFISSLNPSSCTPDI 482 (663)
Q Consensus 404 ~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~-~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 482 (663)
...++.+|. +. .+|++|++++|.+..+|. .+..+++|++|++++|.....++. ..
T Consensus 20 c~~l~~ip~-~~--~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~---------------------~~ 75 (239)
T 2xwt_C 20 CKDIQRIPS-LP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLES---------------------HS 75 (239)
T ss_dssp ECSCSSCCC-CC--TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECT---------------------TT
T ss_pred ccCccccCC-CC--CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCH---------------------hH
Confidence 334666775 33 378888888887777765 467777788887773321222222 13
Q ss_pred cCCCCCccEEEeec-CCCccccchhhhhcCCCCCCEEEEeecCccccccccccccccCCCCce---EEEEecc-cCCCCC
Q 037018 483 LGRLPNVQTLRISG-DLSHYHSGVSKSLCELHKLECLQLVHEGRMWQLSRMVLSEYQFPPCLT---QLSLSNT-QLMEDP 557 (663)
Q Consensus 483 l~~l~~L~~L~l~~-~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~lp~~~~~l~~~l~~L~---~L~L~~~-~l~~~~ 557 (663)
+..+++|+.|++++ + ......+..+..+++|++|++++ +.++.+|. +.. +++|+ .|++++| .+....
T Consensus 76 f~~l~~L~~L~l~~~n--~l~~i~~~~f~~l~~L~~L~l~~-n~l~~lp~----~~~-l~~L~~L~~L~l~~N~~l~~i~ 147 (239)
T 2xwt_C 76 FYNLSKVTHIEIRNTR--NLTYIDPDALKELPLLKFLGIFN-TGLKMFPD----LTK-VYSTDIFFILEITDNPYMTSIP 147 (239)
T ss_dssp EESCTTCCEEEEEEET--TCCEECTTSEECCTTCCEEEEEE-ECCCSCCC----CTT-CCBCCSEEEEEEESCTTCCEEC
T ss_pred cCCCcCCcEEECCCCC--CeeEcCHHHhCCCCCCCEEeCCC-CCCccccc----ccc-ccccccccEEECCCCcchhhcC
Confidence 44556666666665 4 23333334566777788888876 66666763 444 56665 8888888 776666
Q ss_pred hhhhcCCCCCc-EEEeecCCCCCceeeecCCCCCCcccEEEccCCCCccccc-cccccc-cccceEEeecCCCCCCCccc
Q 037018 558 MPALEKLPHLE-VLKLKQNSYSERKLACVGSGSFPQLKILHLKSMLWLEEWT-MGAGAM-PKLESLIVNPCAYLRKLPEE 634 (663)
Q Consensus 558 ~~~l~~l~~L~-~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~-~~~~~l-~~L~~L~l~~c~~l~~l~~~ 634 (663)
...+.++++|+ .|++++|.+.. .+... +.. ++|+.|++++|+.+..++ ..+..+ ++|+.|++++|+. +.+|..
T Consensus 148 ~~~~~~l~~L~~~L~l~~n~l~~-i~~~~-~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l-~~l~~~ 223 (239)
T 2xwt_C 148 VNAFQGLCNETLTLKLYNNGFTS-VQGYA-FNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSV-TALPSK 223 (239)
T ss_dssp TTTTTTTBSSEEEEECCSCCCCE-ECTTT-TTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCC-CCCCCT
T ss_pred cccccchhcceeEEEcCCCCCcc-cCHhh-cCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcc-ccCChh
Confidence 66788888898 99998888763 22221 333 789999999875677775 456778 8999999998874 456654
Q ss_pred cCCCCCCCEEEecCCC
Q 037018 635 LWCIKSLCKLELHWPQ 650 (663)
Q Consensus 635 l~~l~sL~~L~l~~c~ 650 (663)
.+++|+.|++.+|.
T Consensus 224 --~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 224 --GLEHLKELIARNTW 237 (239)
T ss_dssp --TCTTCSEEECTTC-
T ss_pred --HhccCceeeccCcc
Confidence 67899999998875
No 95
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.67 E-value=3.8e-16 Score=162.78 Aligned_cols=240 Identities=18% Similarity=0.095 Sum_probs=183.6
Q ss_pred cCeEeccCCCCccchhhhcccccccEeeccCCcccccchh-hhcCcCCcEEEccCCCCCCCCCC-CcCCCCCCcEeeCc-
Q 037018 397 LKYLKLNIPSLNCLPSLLCTLLNLQTLEMPASYIDHSPEG-IWMMQKLMHLNFGSINLPAPPKN-YSSSLKNLIFISSL- 473 (663)
Q Consensus 397 L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~-l~~l~~L~~L~l~~~~~~~~~~~-~l~~l~~L~~L~l~- 473 (663)
-+.++.++++++++|..+ .+++++|++++|.+..+|.. |..+++|++|++++|.+...+|. .+..+++++++...
T Consensus 11 ~~~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 11 NRVFLCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TTEEEEESTTCCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CCEEEecCCCCCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 367888999999999877 46899999999999999875 89999999999996665565654 56888888765444
Q ss_pred CCC-CCC-hhhcCCCCCccEEEeecCCCccccchhhhhcCCCCCCEEEEeecCccccccccccccccCCCCceEEEEecc
Q 037018 474 NPS-SCT-PDILGRLPNVQTLRISGDLSHYHSGVSKSLCELHKLECLQLVHEGRMWQLSRMVLSEYQFPPCLTQLSLSNT 551 (663)
Q Consensus 474 ~~~-~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~lp~~~~~l~~~l~~L~~L~L~~~ 551 (663)
.+. ..+ +..+..+++|+.|++++|. .....+..+....++..|++.+++.+..+|.. .+......++.|++++|
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~--l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~--~f~~~~~~l~~L~L~~N 164 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTG--IKHLPDVHKIHSLQKVLLDIQDNINIHTIERN--SFVGLSFESVILWLNKN 164 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEEC--CSSCCCCTTCCBSSCEEEEEESCTTCCEECTT--SSTTSBSSCEEEECCSS
T ss_pred CCcccccCchhhhhccccccccccccc--cccCCchhhcccchhhhhhhcccccccccccc--chhhcchhhhhhccccc
Confidence 444 333 5678999999999999983 33333334445567888999877788887751 33341347899999999
Q ss_pred cCCCCChhhhcCCCCCcEEEeecCCCCCceeeecCCCCCCcccEEEccCCCCccccccccccccccceEEeecCCCCCCC
Q 037018 552 QLMEDPMPALEKLPHLEVLKLKQNSYSERKLACVGSGSFPQLKILHLKSMLWLEEWTMGAGAMPKLESLIVNPCAYLRKL 631 (663)
Q Consensus 552 ~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l 631 (663)
.++..... .....+|+.|.+.+++.....+... +.++++|+.|+|++| .++.+|. ..+.+|++|.+.+|..++.+
T Consensus 165 ~i~~i~~~-~f~~~~L~~l~l~~~n~l~~i~~~~-f~~l~~L~~LdLs~N-~l~~lp~--~~~~~L~~L~~l~~~~l~~l 239 (350)
T 4ay9_X 165 GIQEIHNS-AFNGTQLDELNLSDNNNLEELPNDV-FHGASGPVILDISRT-RIHSLPS--YGLENLKKLRARSTYNLKKL 239 (350)
T ss_dssp CCCEECTT-SSTTEEEEEEECTTCTTCCCCCTTT-TTTEECCSEEECTTS-CCCCCCS--SSCTTCCEEECTTCTTCCCC
T ss_pred cccCCChh-hccccchhHHhhccCCcccCCCHHH-hccCcccchhhcCCC-CcCccCh--hhhccchHhhhccCCCcCcC
Confidence 98654433 3356789999998755554444433 688999999999995 7888885 45788999999999999999
Q ss_pred ccccCCCCCCCEEEecC
Q 037018 632 PEELWCIKSLCKLELHW 648 (663)
Q Consensus 632 ~~~l~~l~sL~~L~l~~ 648 (663)
|. +..+++|+.+++.+
T Consensus 240 P~-l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 240 PT-LEKLVALMEASLTY 255 (350)
T ss_dssp CC-TTTCCSCCEEECSC
T ss_pred CC-chhCcChhhCcCCC
Confidence 84 78899999999975
No 96
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.66 E-value=2.8e-17 Score=172.25 Aligned_cols=233 Identities=16% Similarity=0.199 Sum_probs=152.6
Q ss_pred hhHHhcCCCcccEEEecCCcCcccC-----ccCCCCC-CcCeEeccCCCCccc-hhhhccc-----ccccEeeccCCccc
Q 037018 364 CENFCKKFKHLRVLNLGSAILYQYP-----PGLENLF-HLKYLKLNIPSLNCL-PSLLCTL-----LNLQTLEMPASYID 431 (663)
Q Consensus 364 l~~~~~~l~~Lr~L~L~~~~l~~lp-----~~~~~l~-~L~~L~L~~~~i~~l-p~~i~~L-----~~L~~L~L~~~~l~ 431 (663)
++.++...++|++|++++|.++..+ ..+..++ +|++|++++|.+... +..+..+ ++|++|++++|.+.
T Consensus 14 ~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~ 93 (362)
T 3goz_A 14 VEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLS 93 (362)
T ss_dssp HHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGG
T ss_pred HHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCC
Confidence 3677666677999999999988555 5577788 899999999988854 5566654 89999999999776
Q ss_pred ccchh-----hhcC-cCCcEEEccCCCCCCCCCCC----cCC-CCCCcEeeCcCCC-C-----CChhhcCCCC-CccEEE
Q 037018 432 HSPEG-----IWMM-QKLMHLNFGSINLPAPPKNY----SSS-LKNLIFISSLNPS-S-----CTPDILGRLP-NVQTLR 493 (663)
Q Consensus 432 ~lp~~-----l~~l-~~L~~L~l~~~~~~~~~~~~----l~~-l~~L~~L~l~~~~-~-----~~~~~l~~l~-~L~~L~ 493 (663)
..+.. +..+ ++|++|++++|.+....+.. +.. .++|++|++++|. . .++..+..++ +|+.|+
T Consensus 94 ~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~ 173 (362)
T 3goz_A 94 YKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLN 173 (362)
T ss_dssp GSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEE
T ss_pred hHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEee
Confidence 55432 4455 78999999955444333332 233 3578888888876 2 2334445555 788888
Q ss_pred eecCCCccccchh----hhhcCC-CCCCEEEEeecCcccc-----ccccccccccCCCCceEEEEecccCCCCChh----
Q 037018 494 ISGDLSHYHSGVS----KSLCEL-HKLECLQLVHEGRMWQ-----LSRMVLSEYQFPPCLTQLSLSNTQLMEDPMP---- 559 (663)
Q Consensus 494 l~~~~~~~~~~~~----~~l~~l-~~L~~L~l~~~~~l~~-----lp~~~~~l~~~l~~L~~L~L~~~~l~~~~~~---- 559 (663)
+++|. .....+ ..+..+ ++|++|++++ +.++. ++. .+....++|+.|++++|.+.+....
T Consensus 174 Ls~n~--l~~~~~~~l~~~l~~~~~~L~~L~Ls~-N~i~~~~~~~l~~---~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~ 247 (362)
T 3goz_A 174 LRGNN--LASKNCAELAKFLASIPASVTSLDLSA-NLLGLKSYAELAY---IFSSIPNHVVSLNLCLNCLHGPSLENLKL 247 (362)
T ss_dssp CTTSC--GGGSCHHHHHHHHHTSCTTCCEEECTT-SCGGGSCHHHHHH---HHHHSCTTCCEEECCSSCCCCCCHHHHHH
T ss_pred ecCCC--CchhhHHHHHHHHHhCCCCCCEEECCC-CCCChhHHHHHHH---HHhcCCCCceEEECcCCCCCcHHHHHHHH
Confidence 88873 333222 344445 4888888886 66665 554 4444134788888888877665542
Q ss_pred hhcCCCCCcEEEeecCCCCCceee---e--cCCCCCCcccEEEccCCC
Q 037018 560 ALEKLPHLEVLKLKQNSYSERKLA---C--VGSGSFPQLKILHLKSML 602 (663)
Q Consensus 560 ~l~~l~~L~~L~L~~~~~~~~~~~---~--~~~~~~~~L~~L~L~~~~ 602 (663)
.+..+++|+.|++++|.+.+.... . ..+..+++|+.|++++|+
T Consensus 248 ~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 248 LKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp TTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred HHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence 345677888888887763322111 0 014566677777777754
No 97
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.66 E-value=1.3e-17 Score=174.95 Aligned_cols=250 Identities=12% Similarity=0.085 Sum_probs=175.5
Q ss_pred EEEecCCcCc-ccCccCCCCCCcCeEeccCCCCccch-----hhhcccc-cccEeeccCCccccc-chhhhcC-----cC
Q 037018 376 VLNLGSAILY-QYPPGLENLFHLKYLKLNIPSLNCLP-----SLLCTLL-NLQTLEMPASYIDHS-PEGIWMM-----QK 442 (663)
Q Consensus 376 ~L~L~~~~l~-~lp~~~~~l~~L~~L~L~~~~i~~lp-----~~i~~L~-~L~~L~L~~~~l~~l-p~~l~~l-----~~ 442 (663)
.++++.+.++ .+|..+....+|++|++++|.++..+ ..+..++ +|++|++++|.+... +..+..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 3577888887 55555666677999999999998665 5677888 899999999977665 4445554 89
Q ss_pred CcEEEccCCCCCCCCCCC----cCCC-CCCcEeeCcCCC--CCCh----hhcCCC-CCccEEEeecCCCccc----cchh
Q 037018 443 LMHLNFGSINLPAPPKNY----SSSL-KNLIFISSLNPS--SCTP----DILGRL-PNVQTLRISGDLSHYH----SGVS 506 (663)
Q Consensus 443 L~~L~l~~~~~~~~~~~~----l~~l-~~L~~L~l~~~~--~~~~----~~l~~l-~~L~~L~l~~~~~~~~----~~~~ 506 (663)
|++|++++|.+....+.. +..+ ++|++|++++|. ...+ ..+..+ ++|++|++++|. .. ..++
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~--l~~~~~~~l~ 159 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGND--LGIKSSDELI 159 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSC--GGGSCHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCc--CCHHHHHHHH
Confidence 999999955544444443 3344 789999999988 2222 234553 689999999984 33 2455
Q ss_pred hhhcCCC-CCCEEEEeecCcccccccc-c-cccccCC-CCceEEEEecccCCCCChh----hhcC-CCCCcEEEeecCCC
Q 037018 507 KSLCELH-KLECLQLVHEGRMWQLSRM-V-LSEYQFP-PCLTQLSLSNTQLMEDPMP----ALEK-LPHLEVLKLKQNSY 577 (663)
Q Consensus 507 ~~l~~l~-~L~~L~l~~~~~l~~lp~~-~-~~l~~~l-~~L~~L~L~~~~l~~~~~~----~l~~-l~~L~~L~L~~~~~ 577 (663)
..+..++ +|++|++++ +.++..+.. + ..+.. + ++|+.|++++|.+...... .+.. .++|+.|+|++|.+
T Consensus 160 ~~l~~~~~~L~~L~Ls~-n~l~~~~~~~l~~~l~~-~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l 237 (362)
T 3goz_A 160 QILAAIPANVNSLNLRG-NNLASKNCAELAKFLAS-IPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCL 237 (362)
T ss_dssp HHHHTSCTTCCEEECTT-SCGGGSCHHHHHHHHHT-SCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCC
T ss_pred HHHhcCCccccEeeecC-CCCchhhHHHHHHHHHh-CCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCC
Confidence 5666665 899999997 666543310 0 02333 4 5899999999988764433 4444 45999999999988
Q ss_pred CCcee---eecCCCCCCcccEEEccCCC-------CccccccccccccccceEEeecCCCCCC
Q 037018 578 SERKL---ACVGSGSFPQLKILHLKSML-------WLEEWTMGAGAMPKLESLIVNPCAYLRK 630 (663)
Q Consensus 578 ~~~~~---~~~~~~~~~~L~~L~L~~~~-------~l~~l~~~~~~l~~L~~L~l~~c~~l~~ 630 (663)
.+... ... ...+++|+.|+|++|. .+..++..+..+++|+.|++++|+.-..
T Consensus 238 ~~~~~~~l~~~-~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 238 HGPSLENLKLL-KDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp CCCCHHHHHHT-TTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred CcHHHHHHHHH-HhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 77543 222 5678899999999874 1334455677888999999999885543
No 98
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.64 E-value=3.9e-16 Score=159.85 Aligned_cols=156 Identities=19% Similarity=0.126 Sum_probs=70.1
Q ss_pred CCCCccEEEeecCCCccccchhhhhcCCCCCCEEEEeecCcccc---ccccccccccCCCCceEEEEecccCCCCCh--h
Q 037018 485 RLPNVQTLRISGDLSHYHSGVSKSLCELHKLECLQLVHEGRMWQ---LSRMVLSEYQFPPCLTQLSLSNTQLMEDPM--P 559 (663)
Q Consensus 485 ~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~---lp~~~~~l~~~l~~L~~L~L~~~~l~~~~~--~ 559 (663)
.+++|+.|++++| ......+..+..+++|++|++++ +.+.. ++.. ..+.. +++|++|++++|.++.... .
T Consensus 143 ~~~~L~~L~Ls~n--~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~-~~~~~-l~~L~~L~Ls~N~l~~l~~~~~ 217 (310)
T 4glp_A 143 LKPGLKVLSIAQA--HSPAFSCEQVRAFPALTSLDLSD-NPGLGERGLMAA-LCPHK-FPAIQNLALRNTGMETPTGVCA 217 (310)
T ss_dssp BCSCCCEEEEECC--SSCCCCTTSCCCCTTCCEEECCS-CTTCHHHHHHTT-SCTTS-SCCCCSCBCCSSCCCCHHHHHH
T ss_pred hccCCCEEEeeCC--CcchhhHHHhccCCCCCEEECCC-CCCccchhhhHH-Hhhhc-CCCCCEEECCCCCCCchHHHHH
Confidence 4445555555554 23333334444455555555554 32211 1110 01233 5555555555555431110 0
Q ss_pred -hhcCCCCCcEEEeecCCCCCceeeec-CCCCCCcccEEEccCCCCccccccccccccccceEEeecCCCCCCCccccCC
Q 037018 560 -ALEKLPHLEVLKLKQNSYSERKLACV-GSGSFPQLKILHLKSMLWLEEWTMGAGAMPKLESLIVNPCAYLRKLPEELWC 637 (663)
Q Consensus 560 -~l~~l~~L~~L~L~~~~~~~~~~~~~-~~~~~~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~l~~ 637 (663)
.++.+++|++|++++|.+.+..+... ....+++|++|+|++| .++.+|..+. ++|+.|++++|... .+|. +..
T Consensus 218 ~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N-~l~~lp~~~~--~~L~~L~Ls~N~l~-~~~~-~~~ 292 (310)
T 4glp_A 218 ALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFA-GLEQVPKGLP--AKLRVLDLSSNRLN-RAPQ-PDE 292 (310)
T ss_dssp HHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSS-CCCSCCSCCC--SCCSCEECCSCCCC-SCCC-TTS
T ss_pred HHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCC-CCCchhhhhc--CCCCEEECCCCcCC-CCch-hhh
Confidence 13455555556665555554422211 0111245666666553 3445554432 56666666665533 3332 445
Q ss_pred CCCCCEEEecCCC
Q 037018 638 IKSLCKLELHWPQ 650 (663)
Q Consensus 638 l~sL~~L~l~~c~ 650 (663)
+++|+.|++++++
T Consensus 293 l~~L~~L~L~~N~ 305 (310)
T 4glp_A 293 LPEVDNLTLDGNP 305 (310)
T ss_dssp CCCCSCEECSSTT
T ss_pred CCCccEEECcCCC
Confidence 5666666666554
No 99
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.63 E-value=7.9e-16 Score=155.92 Aligned_cols=169 Identities=20% Similarity=0.168 Sum_probs=92.7
Q ss_pred cCCCcccEEEecCCcCcccCccCCCCCCcCeEeccCCCCccchhhhcccccccEeeccCCcccccchhhhcCcCCcEEEc
Q 037018 369 KKFKHLRVLNLGSAILYQYPPGLENLFHLKYLKLNIPSLNCLPSLLCTLLNLQTLEMPASYIDHSPEGIWMMQKLMHLNF 448 (663)
Q Consensus 369 ~~l~~Lr~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~l 448 (663)
..+++|+.|++++|.++.++ .+..+++|++|++++|.++.++. ++.+++|++|++++|.+..+|. +..+++|++|++
T Consensus 43 ~~l~~L~~L~l~~~~i~~~~-~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L 119 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLSL 119 (291)
T ss_dssp HHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEEC
T ss_pred hhcCcccEEEccCCCcccCh-hHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCChh-hccCCCCCEEEC
Confidence 44566666777776666554 35666677777777776666654 6666677777777666666553 666666666666
Q ss_pred cCCCCCCCCCCCcCCCCCCcEeeCcCCC-CCChhhcCCCCCccEEEeecCCCccccchhhhhcCCCCCCEEEEeecCccc
Q 037018 449 GSINLPAPPKNYSSSLKNLIFISSLNPS-SCTPDILGRLPNVQTLRISGDLSHYHSGVSKSLCELHKLECLQLVHEGRMW 527 (663)
Q Consensus 449 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~ 527 (663)
++| ....+ ..+..+++|+.|++++|. ..+ ..++.+++|+.|++++|. ... .+. +..+++|+.|++++ +.++
T Consensus 120 ~~n-~i~~~-~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~--l~~-~~~-l~~l~~L~~L~L~~-N~i~ 191 (291)
T 1h6t_A 120 EHN-GISDI-NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQ--ISD-IVP-LAGLTKLQNLYLSK-NHIS 191 (291)
T ss_dssp TTS-CCCCC-GGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSC--CCC-CGG-GTTCTTCCEEECCS-SCCC
T ss_pred CCC-cCCCC-hhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCc--ccc-chh-hcCCCccCEEECCC-CcCC
Confidence 633 22222 234555555555555554 222 344555555555555551 211 111 44455555555554 4444
Q ss_pred cccccccccccCCCCceEEEEecccC
Q 037018 528 QLSRMVLSEYQFPPCLTQLSLSNTQL 553 (663)
Q Consensus 528 ~lp~~~~~l~~~l~~L~~L~L~~~~l 553 (663)
.+| .+.. +++|+.|++++|.+
T Consensus 192 ~l~----~l~~-l~~L~~L~l~~n~i 212 (291)
T 1h6t_A 192 DLR----ALAG-LKNLDVLELFSQEC 212 (291)
T ss_dssp BCG----GGTT-CTTCSEEEEEEEEE
T ss_pred CCh----hhcc-CCCCCEEECcCCcc
Confidence 444 3344 55555555555544
No 100
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.63 E-value=4.8e-15 Score=146.75 Aligned_cols=178 Identities=21% Similarity=0.196 Sum_probs=103.0
Q ss_pred CcccEEEecCCcCcccCccCCCCCCcCeEeccCCCCccch-hhhcccccccEeeccCCcccccchh-hhcCcCCcEEEcc
Q 037018 372 KHLRVLNLGSAILYQYPPGLENLFHLKYLKLNIPSLNCLP-SLLCTLLNLQTLEMPASYIDHSPEG-IWMMQKLMHLNFG 449 (663)
Q Consensus 372 ~~Lr~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~l~~lp~~-l~~l~~L~~L~l~ 449 (663)
+..++++++++.++.+|..+. ++|++|++++|.+..++ ..++++++|++|++++|.+..++.. +..+++|++|+++
T Consensus 14 ~~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 446777888887777776654 57788888888777654 3567777777777777766665443 5667777777777
Q ss_pred CCCCCCCCCCCcCCCCCCcEeeCcCCCCCChhhcCCCCCccEEEeecCCCccccchhhhhcCCCCCCEEEEeecCccccc
Q 037018 450 SINLPAPPKNYSSSLKNLIFISSLNPSSCTPDILGRLPNVQTLRISGDLSHYHSGVSKSLCELHKLECLQLVHEGRMWQL 529 (663)
Q Consensus 450 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l 529 (663)
+|.+....+..+..+++|+.|+++++. .....+..+..+++|+.|++++ +.++.+
T Consensus 92 ~n~l~~~~~~~~~~l~~L~~L~L~~N~------------------------l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~ 146 (251)
T 3m19_A 92 NNQLASLPLGVFDHLTQLDKLYLGGNQ------------------------LKSLPSGVFDRLTKLKELRLNT-NQLQSI 146 (251)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSSC------------------------CCCCCTTTTTTCTTCCEEECCS-SCCCCC
T ss_pred CCcccccChhHhcccCCCCEEEcCCCc------------------------CCCcChhHhccCCcccEEECcC-CcCCcc
Confidence 443333333334444444444444443 2211222234455555555554 445444
Q ss_pred cccccccccCCCCceEEEEecccCCCCChhhhcCCCCCcEEEeecCCCCC
Q 037018 530 SRMVLSEYQFPPCLTQLSLSNTQLMEDPMPALEKLPHLEVLKLKQNSYSE 579 (663)
Q Consensus 530 p~~~~~l~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~ 579 (663)
|.. .+.. +++|+.|++++|.+.......+..+++|+.|++++|.+..
T Consensus 147 ~~~--~~~~-l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 147 PAG--AFDK-LTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp CTT--TTTT-CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCT
T ss_pred CHH--HcCc-CcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeC
Confidence 431 2344 5566666666666554444455566666666666665543
No 101
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.61 E-value=9.5e-15 Score=144.62 Aligned_cols=147 Identities=21% Similarity=0.219 Sum_probs=105.2
Q ss_pred CcccEEEeecCccccccccchhHHhcCCCcccEEEecCCcCcccC-ccCCCCCCcCeEeccCCCCccch-hhhccccccc
Q 037018 344 MYLQSFLNHTLESDRLALIDCENFCKKFKHLRVLNLGSAILYQYP-PGLENLFHLKYLKLNIPSLNCLP-SLLCTLLNLQ 421 (663)
Q Consensus 344 ~~lr~L~l~~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~l~~lp-~~~~~l~~L~~L~L~~~~i~~lp-~~i~~L~~L~ 421 (663)
...+.+.+.++... .++.- -.++|+.|++++|.+..++ ..+..+++|++|++++|.++.++ ..+..+++|+
T Consensus 14 ~~~~~l~~~~~~l~-----~~p~~--~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 86 (251)
T 3m19_A 14 EGKKEVDCQGKSLD-----SVPSG--IPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELG 86 (251)
T ss_dssp GGGTEEECTTCCCS-----SCCSC--CCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred CCCeEEecCCCCcc-----ccCCC--CCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCC
Confidence 45667777766554 23221 2368999999999998554 46899999999999999999775 4578999999
Q ss_pred EeeccCCcccccchh-hhcCcCCcEEEccCCCCCCCCCCCcCCCCCCcEeeCcCCC-CCChh-hcCCCCCccEEEeecC
Q 037018 422 TLEMPASYIDHSPEG-IWMMQKLMHLNFGSINLPAPPKNYSSSLKNLIFISSLNPS-SCTPD-ILGRLPNVQTLRISGD 497 (663)
Q Consensus 422 ~L~L~~~~l~~lp~~-l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~-~l~~l~~L~~L~l~~~ 497 (663)
+|++++|.+..+|.. +..+++|++|++++|.+....+..+..+++|+.|+++++. ..++. .++.+++|+.|++++|
T Consensus 87 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N 165 (251)
T 3m19_A 87 TLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTN 165 (251)
T ss_dssp EEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred EEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCC
Confidence 999999988888754 7899999999999554443333345666777777666665 33222 3455555555555554
No 102
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.61 E-value=2.4e-15 Score=167.17 Aligned_cols=171 Identities=20% Similarity=0.175 Sum_probs=92.3
Q ss_pred cCCCcccEEEecCCcCcccCccCCCCCCcCeEeccCCCCccchhhhcccccccEeeccCCcccccchhhhcCcCCcEEEc
Q 037018 369 KKFKHLRVLNLGSAILYQYPPGLENLFHLKYLKLNIPSLNCLPSLLCTLLNLQTLEMPASYIDHSPEGIWMMQKLMHLNF 448 (663)
Q Consensus 369 ~~l~~Lr~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~l 448 (663)
..+++|+.|++++|.+..++ .++.+++|+.|+|++|.+..+|. ++.+++|+.|+|++|.+..+| .+..+++|++|++
T Consensus 40 ~~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~L 116 (605)
T 1m9s_A 40 NELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLSL 116 (605)
T ss_dssp HHHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEEEC
T ss_pred hcCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCCCh-hhccCCCCCEEEe
Confidence 34555666666666665554 35556666666666666665554 556666666666666555554 4556666666666
Q ss_pred cCCCCCCCCCCCcCCCCCCcEeeCcCCC-CCChhhcCCCCCccEEEeecCCCccccchhhhhcCCCCCCEEEEeecCccc
Q 037018 449 GSINLPAPPKNYSSSLKNLIFISSLNPS-SCTPDILGRLPNVQTLRISGDLSHYHSGVSKSLCELHKLECLQLVHEGRMW 527 (663)
Q Consensus 449 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~ 527 (663)
++| ....+ ..+..+++|+.|++++|. ..+ ..++.+++|+.|++++| ......+ +..+++|+.|+|++ +.+.
T Consensus 117 s~N-~l~~l-~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N--~l~~~~~--l~~l~~L~~L~Ls~-N~i~ 188 (605)
T 1m9s_A 117 EHN-GISDI-NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDN--QISDIVP--LAGLTKLQNLYLSK-NHIS 188 (605)
T ss_dssp TTS-CCCCC-GGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSS--CCCCCGG--GTTCTTCCEEECCS-SCCC
T ss_pred cCC-CCCCC-ccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCC--cCCCchh--hccCCCCCEEECcC-CCCC
Confidence 632 22222 235555555555555555 222 44555555566655555 2222212 45555555555554 4555
Q ss_pred cccccccccccCCCCceEEEEecccCCC
Q 037018 528 QLSRMVLSEYQFPPCLTQLSLSNTQLME 555 (663)
Q Consensus 528 ~lp~~~~~l~~~l~~L~~L~L~~~~l~~ 555 (663)
.+| .+.. +++|+.|+|++|.+..
T Consensus 189 ~l~----~l~~-l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 189 DLR----ALAG-LKNLDVLELFSQECLN 211 (605)
T ss_dssp BCG----GGTT-CTTCSEEECCSEEEEC
T ss_pred CCh----HHcc-CCCCCEEEccCCcCcC
Confidence 544 3444 5555555555555443
No 103
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.58 E-value=2e-14 Score=145.49 Aligned_cols=172 Identities=22% Similarity=0.234 Sum_probs=142.7
Q ss_pred CCcccEEEeecCccccccccchhHHhcCCCcccEEEecCCcCcccCccCCCCCCcCeEeccCCCCccchhhhcccccccE
Q 037018 343 DMYLQSFLNHTLESDRLALIDCENFCKKFKHLRVLNLGSAILYQYPPGLENLFHLKYLKLNIPSLNCLPSLLCTLLNLQT 422 (663)
Q Consensus 343 ~~~lr~L~l~~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~ 422 (663)
+++++.|.+.++... .++.+ ..+++|++|++++|.++.++. +..+++|++|++++|.++.+|. ++.+++|++
T Consensus 45 l~~L~~L~l~~~~i~-----~~~~~-~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~ 116 (291)
T 1h6t_A 45 LNSIDQIIANNSDIK-----SVQGI-QYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSS-LKDLKKLKS 116 (291)
T ss_dssp HHTCCEEECTTSCCC-----CCTTG-GGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCE
T ss_pred cCcccEEEccCCCcc-----cChhH-hcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCChh-hccCCCCCE
Confidence 678888888888664 34555 889999999999999987766 8899999999999999998774 889999999
Q ss_pred eeccCCcccccchhhhcCcCCcEEEccCCCCCCCCCCCcCCCCCCcEeeCcCCC-CCChhhcCCCCCccEEEeecCCCcc
Q 037018 423 LEMPASYIDHSPEGIWMMQKLMHLNFGSINLPAPPKNYSSSLKNLIFISSLNPS-SCTPDILGRLPNVQTLRISGDLSHY 501 (663)
Q Consensus 423 L~L~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~ 501 (663)
|++++|.+..++ .+..+++|++|+++ ++....+ ..++.+++|+.|++++|. ...+. +..+++|+.|++++|. .
T Consensus 117 L~L~~n~i~~~~-~l~~l~~L~~L~l~-~n~l~~~-~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~--i 190 (291)
T 1h6t_A 117 LSLEHNGISDIN-GLVHLPQLESLYLG-NNKITDI-TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNH--I 190 (291)
T ss_dssp EECTTSCCCCCG-GGGGCTTCCEEECC-SSCCCCC-GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSC--C
T ss_pred EECCCCcCCCCh-hhcCCCCCCEEEcc-CCcCCcc-hhhccCCCCCEEEccCCccccchh-hcCCCccCEEECCCCc--C
Confidence 999999888875 68899999999999 4444444 578899999999999998 55544 8999999999999983 3
Q ss_pred ccchhhhhcCCCCCCEEEEeecCccccccc
Q 037018 502 HSGVSKSLCELHKLECLQLVHEGRMWQLSR 531 (663)
Q Consensus 502 ~~~~~~~l~~l~~L~~L~l~~~~~l~~lp~ 531 (663)
..++ .+..+++|+.|++++ +.+...|.
T Consensus 191 -~~l~-~l~~l~~L~~L~l~~-n~i~~~~~ 217 (291)
T 1h6t_A 191 -SDLR-ALAGLKNLDVLELFS-QECLNKPI 217 (291)
T ss_dssp -CBCG-GGTTCTTCSEEEEEE-EEEECCCE
T ss_pred -CCCh-hhccCCCCCEEECcC-CcccCCcc
Confidence 3344 478899999999998 77766553
No 104
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.57 E-value=2.2e-14 Score=157.72 Aligned_cols=181 Identities=18% Similarity=0.182 Sum_probs=128.4
Q ss_pred CcccEEEecCCcCcccCccCCCCCCcCeEeccCCCCccchhhhcccccccEeeccCCcccccchhhhcCcCCcEEEccCC
Q 037018 372 KHLRVLNLGSAILYQYPPGLENLFHLKYLKLNIPSLNCLPSLLCTLLNLQTLEMPASYIDHSPEGIWMMQKLMHLNFGSI 451 (663)
Q Consensus 372 ~~Lr~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~l~~~ 451 (663)
.+|++|++++|.++.+|..+. ++|++|++++|.++.+| +.+++|++|++++|.+..+|. +.. +|++|++++|
T Consensus 59 ~~L~~L~Ls~n~L~~lp~~l~--~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N 130 (571)
T 3cvr_A 59 NQFSELQLNRLNLSSLPDNLP--PQITVLEITQNALISLP---ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNN 130 (571)
T ss_dssp TTCSEEECCSSCCSCCCSCCC--TTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSS
T ss_pred CCccEEEeCCCCCCccCHhHc--CCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCCC
Confidence 478888888888887777663 78888888888888888 457888888888888777877 544 8888888844
Q ss_pred CCCCCCCCCcCCCCCCcEeeCcCCC-CCChhhcCCCCCccEEEeecCCCccccchhhhhcCCCCCCEEEEeecCcccccc
Q 037018 452 NLPAPPKNYSSSLKNLIFISSLNPS-SCTPDILGRLPNVQTLRISGDLSHYHSGVSKSLCELHKLECLQLVHEGRMWQLS 530 (663)
Q Consensus 452 ~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~lp 530 (663)
. ...+|. .+++|+.|++++|. ..++. .+++|+.|++++|. . ..+|. +. ++|+.|++++ |.++.+|
T Consensus 131 ~-l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~--L-~~lp~-l~--~~L~~L~Ls~-N~L~~lp 196 (571)
T 3cvr_A 131 Q-LTMLPE---LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQ--L-TFLPE-LP--ESLEALDVST-NLLESLP 196 (571)
T ss_dssp C-CSCCCC---CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSC--C-SCCCC-CC--TTCCEEECCS-SCCSSCC
T ss_pred c-CCCCCC---cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCC--C-CCcch-hh--CCCCEEECcC-CCCCchh
Confidence 4 334665 57788888888877 44444 56788888888872 2 23555 44 7888888886 7777777
Q ss_pred ccccccccCCCCc-------eEEEEecccCCCCChhhhcCCCCCcEEEeecCCCCCcee
Q 037018 531 RMVLSEYQFPPCL-------TQLSLSNTQLMEDPMPALEKLPHLEVLKLKQNSYSERKL 582 (663)
Q Consensus 531 ~~~~~l~~~l~~L-------~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~ 582 (663)
. + ..+| +.|++++|.++. .+..+..+++|+.|+|++|.+++..+
T Consensus 197 ~----~---~~~L~~~~~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~L~~N~l~~~~p 247 (571)
T 3cvr_A 197 A----V---PVRNHHSEETEIFFRCRENRITH-IPENILSLDPTCTIILEDNPLSSRIR 247 (571)
T ss_dssp C----C---C--------CCEEEECCSSCCCC-CCGGGGGSCTTEEEECCSSSCCHHHH
T ss_pred h----H---HHhhhcccccceEEecCCCccee-cCHHHhcCCCCCEEEeeCCcCCCcCH
Confidence 3 1 2255 888888887753 45556668888888888777766443
No 105
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.56 E-value=2.4e-14 Score=159.18 Aligned_cols=191 Identities=18% Similarity=0.150 Sum_probs=152.4
Q ss_pred ccEEEecCCcCcccCccCCCCCCcCeEeccCCCCccchhhhcccccccEeeccCCcccccchhhhcCcCCcEEEccCCCC
Q 037018 374 LRVLNLGSAILYQYPPGLENLFHLKYLKLNIPSLNCLPSLLCTLLNLQTLEMPASYIDHSPEGIWMMQKLMHLNFGSINL 453 (663)
Q Consensus 374 Lr~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~l~~~~~ 453 (663)
+..+.+..+.+..++ .+..+.+|++|++++|.+..+| .++.+++|+.|+|++|.+..++. +..+++|++|+++ +|.
T Consensus 23 l~~l~l~~~~i~~~~-~~~~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls-~N~ 98 (605)
T 1m9s_A 23 TIKDNLKKKSVTDAV-TQNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLD-ENK 98 (605)
T ss_dssp HHHHHTTCSCTTSEE-CHHHHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECC-SSC
T ss_pred HHHHhccCCCccccc-chhcCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECc-CCC
Confidence 444455666555432 2457889999999999999887 68999999999999999988886 8999999999999 444
Q ss_pred CCCCCCCcCCCCCCcEeeCcCCCCCChhhcCCCCCccEEEeecCCCccccchhhhhcCCCCCCEEEEeecCccccccccc
Q 037018 454 PAPPKNYSSSLKNLIFISSLNPSSCTPDILGRLPNVQTLRISGDLSHYHSGVSKSLCELHKLECLQLVHEGRMWQLSRMV 533 (663)
Q Consensus 454 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~lp~~~ 533 (663)
...+| .+..+++|+.|++++|.-..+..+..+++|+.|++++|. ... + ..+..+++|+.|+|++ +.+..++
T Consensus 99 l~~l~-~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~--l~~-l-~~l~~l~~L~~L~Ls~-N~l~~~~--- 169 (605)
T 1m9s_A 99 IKDLS-SLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNK--ITD-I-TVLSRLTKLDTLSLED-NQISDIV--- 169 (605)
T ss_dssp CCCCT-TSTTCTTCCEEECTTSCCCCCGGGGGCTTCSEEECCSSC--CCC-C-GGGGSCTTCSEEECCS-SCCCCCG---
T ss_pred CCCCh-hhccCCCCCEEEecCCCCCCCccccCCCccCEEECCCCc--cCC-c-hhhcccCCCCEEECcC-CcCCCch---
Confidence 44444 688999999999999982223568889999999999983 332 2 5678899999999997 7787776
Q ss_pred cccccCCCCceEEEEecccCCCCChhhhcCCCCCcEEEeecCCCCCce
Q 037018 534 LSEYQFPPCLTQLSLSNTQLMEDPMPALEKLPHLEVLKLKQNSYSERK 581 (663)
Q Consensus 534 ~~l~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~ 581 (663)
.+.. +++|+.|+|++|.+.+. +.+..+++|+.|+|++|.+.+..
T Consensus 170 -~l~~-l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~p 213 (605)
T 1m9s_A 170 -PLAG-LTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNKP 213 (605)
T ss_dssp -GGTT-CTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECCC
T ss_pred -hhcc-CCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCCc
Confidence 3566 89999999999988653 57889999999999988876644
No 106
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.54 E-value=2.7e-14 Score=156.94 Aligned_cols=188 Identities=17% Similarity=0.179 Sum_probs=147.2
Q ss_pred CcccEEEeecCccccccccchhHHhcCCCcccEEEecCCcCcccCccCCCCCCcCeEeccCCCCccchhhhcccccccEe
Q 037018 344 MYLQSFLNHTLESDRLALIDCENFCKKFKHLRVLNLGSAILYQYPPGLENLFHLKYLKLNIPSLNCLPSLLCTLLNLQTL 423 (663)
Q Consensus 344 ~~lr~L~l~~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L 423 (663)
.+++.|.+.++.... ++.- -+++|++|++++|.++.+| +.+++|++|++++|.++.+|. +++ +|++|
T Consensus 59 ~~L~~L~Ls~n~L~~-----lp~~--l~~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L 125 (571)
T 3cvr_A 59 NQFSELQLNRLNLSS-----LPDN--LPPQITVLEITQNALISLP---ELPASLEYLDACDNRLSTLPE-LPA--SLKHL 125 (571)
T ss_dssp TTCSEEECCSSCCSC-----CCSC--CCTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC-CCT--TCCEE
T ss_pred CCccEEEeCCCCCCc-----cCHh--HcCCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCCcch-hhc--CCCEE
Confidence 367777777776542 3221 1478999999999998888 457899999999999999887 655 99999
Q ss_pred eccCCcccccchhhhcCcCCcEEEccCCCCCCCCCCCcCCCCCCcEeeCcCCC-CCChhhcCCCCCccEEEeecCCCccc
Q 037018 424 EMPASYIDHSPEGIWMMQKLMHLNFGSINLPAPPKNYSSSLKNLIFISSLNPS-SCTPDILGRLPNVQTLRISGDLSHYH 502 (663)
Q Consensus 424 ~L~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~ 502 (663)
++++|.+..+|. .+++|++|++++ |....+|. .+++|+.|++++|. ..++. +. ++|+.|++++|. .
T Consensus 126 ~Ls~N~l~~lp~---~l~~L~~L~Ls~-N~l~~lp~---~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~--L- 192 (571)
T 3cvr_A 126 DVDNNQLTMLPE---LPALLEYINADN-NQLTMLPE---LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNL--L- 192 (571)
T ss_dssp ECCSSCCSCCCC---CCTTCCEEECCS-SCCSCCCC---CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSC--C-
T ss_pred ECCCCcCCCCCC---cCccccEEeCCC-CccCcCCC---cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCC--C-
Confidence 999998888887 689999999994 44444665 57889999999998 55666 55 899999999983 3
Q ss_pred cchhhhhcCCCCC-------CEEEEeecCccccccccccccccCCCCceEEEEecccCCCCChhhhcCCC
Q 037018 503 SGVSKSLCELHKL-------ECLQLVHEGRMWQLSRMVLSEYQFPPCLTQLSLSNTQLMEDPMPALEKLP 565 (663)
Q Consensus 503 ~~~~~~l~~l~~L-------~~L~l~~~~~l~~lp~~~~~l~~~l~~L~~L~L~~~~l~~~~~~~l~~l~ 565 (663)
..+|. +.. +| +.|++++ |.++.+|. .+.. +++|+.|+|++|.+++..+..+..++
T Consensus 193 ~~lp~-~~~--~L~~~~~~L~~L~Ls~-N~l~~lp~---~l~~-l~~L~~L~L~~N~l~~~~p~~l~~l~ 254 (571)
T 3cvr_A 193 ESLPA-VPV--RNHHSEETEIFFRCRE-NRITHIPE---NILS-LDPTCTIILEDNPLSSRIRESLSQQT 254 (571)
T ss_dssp SSCCC-CC----------CCEEEECCS-SCCCCCCG---GGGG-SCTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred Cchhh-HHH--hhhcccccceEEecCC-CcceecCH---HHhc-CCCCCEEEeeCCcCCCcCHHHHHHhh
Confidence 35555 433 66 9999997 89999998 8999 99999999999999887777776643
No 107
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.54 E-value=2.3e-14 Score=136.26 Aligned_cols=153 Identities=16% Similarity=0.178 Sum_probs=83.4
Q ss_pred CCCCcCeEeccCCCCccchhhhcccccccEeeccCCcccccchhhhcCcCCcEEEccCCCCCCCCCCCcCCCCCCcEeeC
Q 037018 393 NLFHLKYLKLNIPSLNCLPSLLCTLLNLQTLEMPASYIDHSPEGIWMMQKLMHLNFGSINLPAPPKNYSSSLKNLIFISS 472 (663)
Q Consensus 393 ~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 472 (663)
.+++|++|++++|.+..+| .+..+++|++|++++|.+..++ .+..+++|++|++++|.+....+
T Consensus 42 ~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~-------------- 105 (197)
T 4ezg_A 42 QMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKI-------------- 105 (197)
T ss_dssp HHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGS--------------
T ss_pred hcCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccC--------------
Confidence 3445555555555555555 4555555555555555444333 34455555555555332222223
Q ss_pred cCCCCCChhhcCCCCCccEEEeecCCCccccchhhhhcCCCCCCEEEEeecCccccccccccccccCCCCceEEEEeccc
Q 037018 473 LNPSSCTPDILGRLPNVQTLRISGDLSHYHSGVSKSLCELHKLECLQLVHEGRMWQLSRMVLSEYQFPPCLTQLSLSNTQ 552 (663)
Q Consensus 473 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~lp~~~~~l~~~l~~L~~L~L~~~~ 552 (663)
..++.+++|+.|++++| ......+..+..+++|++|++++|..++.+| .+.. +++|+.|++++|.
T Consensus 106 --------~~l~~l~~L~~L~Ls~n--~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~----~l~~-l~~L~~L~l~~n~ 170 (197)
T 4ezg_A 106 --------PNLSGLTSLTLLDISHS--AHDDSILTKINTLPKVNSIDLSYNGAITDIM----PLKT-LPELKSLNIQFDG 170 (197)
T ss_dssp --------CCCTTCTTCCEEECCSS--BCBGGGHHHHTTCSSCCEEECCSCTBCCCCG----GGGG-CSSCCEEECTTBC
T ss_pred --------hhhcCCCCCCEEEecCC--ccCcHhHHHHhhCCCCCEEEccCCCCccccH----hhcC-CCCCCEEECCCCC
Confidence 33444555555555555 3444445556666666666666532355565 4555 6777777777777
Q ss_pred CCCCChhhhcCCCCCcEEEeecCCCC
Q 037018 553 LMEDPMPALEKLPHLEVLKLKQNSYS 578 (663)
Q Consensus 553 l~~~~~~~l~~l~~L~~L~L~~~~~~ 578 (663)
+.+.. .+..+++|+.|++++|.+.
T Consensus 171 i~~~~--~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 171 VHDYR--GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp CCCCT--TGGGCSSCCEEEECBC---
T ss_pred CcChH--HhccCCCCCEEEeeCcccC
Confidence 65422 6667777777777777654
No 108
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.53 E-value=5e-14 Score=133.87 Aligned_cols=129 Identities=21% Similarity=0.244 Sum_probs=98.0
Q ss_pred cCCCCCCcEeeCcCCCCCChhhcCCCCCccEEEeecCCCccccchhhhhcCCCCCCEEEEeecCcccc-ccccccccccC
Q 037018 461 SSSLKNLIFISSLNPSSCTPDILGRLPNVQTLRISGDLSHYHSGVSKSLCELHKLECLQLVHEGRMWQ-LSRMVLSEYQF 539 (663)
Q Consensus 461 l~~l~~L~~L~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~-lp~~~~~l~~~ 539 (663)
+..+++|++|++.+|....+..+..+++|+.|++++| ......+..+..+++|++|++++ +.+.. .|. .+..
T Consensus 62 l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n--~l~~~~~~~l~~l~~L~~L~Ls~-n~i~~~~~~---~l~~- 134 (197)
T 4ezg_A 62 IEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGK--DVTSDKIPNLSGLTSLTLLDISH-SAHDDSILT---KINT- 134 (197)
T ss_dssp GGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECT--TCBGGGSCCCTTCTTCCEEECCS-SBCBGGGHH---HHTT-
T ss_pred HhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECC--ccCcccChhhcCCCCCCEEEecC-CccCcHhHH---HHhh-
Confidence 4444444444444444222335778889999999998 46555677888999999999997 67764 565 7888
Q ss_pred CCCceEEEEeccc-CCCCChhhhcCCCCCcEEEeecCCCCCceeeecCCCCCCcccEEEccCCC
Q 037018 540 PPCLTQLSLSNTQ-LMEDPMPALEKLPHLEVLKLKQNSYSERKLACVGSGSFPQLKILHLKSML 602 (663)
Q Consensus 540 l~~L~~L~L~~~~-l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~ 602 (663)
+++|+.|++++|. +.. . +.+..+++|+.|++++|.+.+.. . +..+++|+.|++++++
T Consensus 135 l~~L~~L~L~~n~~i~~-~-~~l~~l~~L~~L~l~~n~i~~~~---~-l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 135 LPKVNSIDLSYNGAITD-I-MPLKTLPELKSLNIQFDGVHDYR---G-IEDFPKLNQLYAFSQT 192 (197)
T ss_dssp CSSCCEEECCSCTBCCC-C-GGGGGCSSCCEEECTTBCCCCCT---T-GGGCSSCCEEEECBC-
T ss_pred CCCCCEEEccCCCCccc-c-HhhcCCCCCCEEECCCCCCcChH---H-hccCCCCCEEEeeCcc
Confidence 9999999999998 543 3 37999999999999999987643 2 6789999999999964
No 109
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.52 E-value=1.6e-14 Score=143.85 Aligned_cols=121 Identities=19% Similarity=0.144 Sum_probs=79.6
Q ss_pred CCCcccEEEecCCcCcccCccCCCCCCcCeEeccCCCCccchhhhcccccccEeeccCCcccccchhhhcCcCCcEEEcc
Q 037018 370 KFKHLRVLNLGSAILYQYPPGLENLFHLKYLKLNIPSLNCLPSLLCTLLNLQTLEMPASYIDHSPEGIWMMQKLMHLNFG 449 (663)
Q Consensus 370 ~l~~Lr~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~l~ 449 (663)
.+.++..++++++.++.++ .+..+++|++|++++|.++.+| .++.+++|++|++++|.+..++. +..+++|++|+++
T Consensus 17 ~l~~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~ 93 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVN 93 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECC
T ss_pred HHHHHHHHHhcCCCccccc-chhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECC
Confidence 3455666677777777665 5667788888888888888877 67788888888888888877776 7788888888888
Q ss_pred CCCCCCCCCCCcCCCCCCcEeeCcCCC-CCChhhcCCCCCccEEEeecC
Q 037018 450 SINLPAPPKNYSSSLKNLIFISSLNPS-SCTPDILGRLPNVQTLRISGD 497 (663)
Q Consensus 450 ~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~ 497 (663)
++....+|... . ++|+.|++++|. ... ..++.+++|+.|++++|
T Consensus 94 -~N~l~~l~~~~-~-~~L~~L~L~~N~l~~~-~~l~~l~~L~~L~Ls~N 138 (263)
T 1xeu_A 94 -RNRLKNLNGIP-S-ACLSRLFLDNNELRDT-DSLIHLKNLEILSIRNN 138 (263)
T ss_dssp -SSCCSCCTTCC-C-SSCCEEECCSSCCSBS-GGGTTCTTCCEEECTTS
T ss_pred -CCccCCcCccc-c-CcccEEEccCCccCCC-hhhcCcccccEEECCCC
Confidence 43333344322 2 555555555554 222 23444555555555544
No 110
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.50 E-value=1.9e-14 Score=143.45 Aligned_cols=122 Identities=21% Similarity=0.230 Sum_probs=57.4
Q ss_pred cCCCcccEEEecCCcCcccCccCCCCCCcCeEeccCCCCccchhhhcccccccEeeccCCcccccchhhhcCcCCcEEEc
Q 037018 369 KKFKHLRVLNLGSAILYQYPPGLENLFHLKYLKLNIPSLNCLPSLLCTLLNLQTLEMPASYIDHSPEGIWMMQKLMHLNF 448 (663)
Q Consensus 369 ~~l~~Lr~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~l 448 (663)
..+++|++|++++|.++.++ .++.+++|++|++++|.++.+|. ++.+++|++|++++|.+..+|... . ++|++|++
T Consensus 38 ~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~l~~l~~~~-~-~~L~~L~L 113 (263)
T 1xeu_A 38 KELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNRLKNLNGIP-S-ACLSRLFL 113 (263)
T ss_dssp HHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSCCSCCTTCC-C-SSCCEEEC
T ss_pred hhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCCccCCcCccc-c-CcccEEEc
Confidence 44455555555555554444 34445555555555555554444 455555555555555444444321 1 45555555
Q ss_pred cCCCCCCCCCCCcCCCCCCcEeeCcCCC-CCChhhcCCCCCccEEEeecC
Q 037018 449 GSINLPAPPKNYSSSLKNLIFISSLNPS-SCTPDILGRLPNVQTLRISGD 497 (663)
Q Consensus 449 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~ 497 (663)
++ |....++ .+..+++|+.|++++|. ..+ ..++.+++|+.|++++|
T Consensus 114 ~~-N~l~~~~-~l~~l~~L~~L~Ls~N~i~~~-~~l~~l~~L~~L~L~~N 160 (263)
T 1xeu_A 114 DN-NELRDTD-SLIHLKNLEILSIRNNKLKSI-VMLGFLSKLEVLDLHGN 160 (263)
T ss_dssp CS-SCCSBSG-GGTTCTTCCEEECTTSCCCBC-GGGGGCTTCCEEECTTS
T ss_pred cC-CccCCCh-hhcCcccccEEECCCCcCCCC-hHHccCCCCCEEECCCC
Confidence 52 2222222 34455555555555544 222 23444445555555444
No 111
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.49 E-value=1.2e-13 Score=132.43 Aligned_cols=100 Identities=22% Similarity=0.278 Sum_probs=55.6
Q ss_pred cEEEecCCcCcccCccCCCCCCcCeEeccCCCCccchh-hhcccccccEeeccCCcccccchh-hhcCcCCcEEEccCCC
Q 037018 375 RVLNLGSAILYQYPPGLENLFHLKYLKLNIPSLNCLPS-LLCTLLNLQTLEMPASYIDHSPEG-IWMMQKLMHLNFGSIN 452 (663)
Q Consensus 375 r~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~l~~lp~~-l~~l~~L~~L~l~~~~ 452 (663)
+.++.+++.++.+|..+ .++|++|++++|.++.+|. .++.+++|++|++++|.+..+|.. +..+++|++|++++|.
T Consensus 10 ~~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 87 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ 87 (208)
T ss_dssp TEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc
Confidence 34556666666665443 3466777777776665553 345666777777766666665543 4566666666666333
Q ss_pred CCCCCCCCcCCCCCCcEeeCcCCC
Q 037018 453 LPAPPKNYSSSLKNLIFISSLNPS 476 (663)
Q Consensus 453 ~~~~~~~~l~~l~~L~~L~l~~~~ 476 (663)
+....+..+..+++|+.|+++++.
T Consensus 88 l~~~~~~~~~~l~~L~~L~L~~N~ 111 (208)
T 2o6s_A 88 LQSLPNGVFDKLTQLKELALNTNQ 111 (208)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCccCHhHhcCccCCCEEEcCCCc
Confidence 332222223444455555544443
No 112
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.49 E-value=2.1e-13 Score=130.73 Aligned_cols=181 Identities=18% Similarity=0.196 Sum_probs=95.4
Q ss_pred cCeEeccCCCCccchhhhcccccccEeeccCCcccccchh-hhcCcCCcEEEccCCCCCCCCCCCcCCCCCCcEeeCcCC
Q 037018 397 LKYLKLNIPSLNCLPSLLCTLLNLQTLEMPASYIDHSPEG-IWMMQKLMHLNFGSINLPAPPKNYSSSLKNLIFISSLNP 475 (663)
Q Consensus 397 L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~-l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 475 (663)
-+.++.+++.++.+|..+ ..+|++|++++|.+..++.. +..+++|++|++++|.+....+..+..
T Consensus 9 ~~~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~------------ 74 (208)
T 2o6s_A 9 GTTVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNK------------ 74 (208)
T ss_dssp TTEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTT------------
T ss_pred CCEEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCC------------
Confidence 356666777777666544 34677777777766666543 456677777777633322222222333
Q ss_pred CCCChhhcCCCCCccEEEeecCCCccccchhhhhcCCCCCCEEEEeecCccccccccccccccCCCCceEEEEecccCCC
Q 037018 476 SSCTPDILGRLPNVQTLRISGDLSHYHSGVSKSLCELHKLECLQLVHEGRMWQLSRMVLSEYQFPPCLTQLSLSNTQLME 555 (663)
Q Consensus 476 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~lp~~~~~l~~~l~~L~~L~L~~~~l~~ 555 (663)
+++|+.|++++| ......+..+..+++|++|++++ +.++.+|.. .+.. +++|+.|++++|.+..
T Consensus 75 ----------l~~L~~L~Ls~n--~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~--~~~~-l~~L~~L~l~~N~l~~ 138 (208)
T 2o6s_A 75 ----------LTSLTYLNLSTN--QLQSLPNGVFDKLTQLKELALNT-NQLQSLPDG--VFDK-LTQLKDLRLYQNQLKS 138 (208)
T ss_dssp ----------CTTCCEEECCSS--CCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTT--TTTT-CTTCCEEECCSSCCSC
T ss_pred ----------CCCcCEEECCCC--cCCccCHhHhcCccCCCEEEcCC-CcCcccCHh--Hhcc-CCcCCEEECCCCccce
Confidence 444444444444 12222222334555555555554 445544430 2344 5666666666666554
Q ss_pred CChhhhcCCCCCcEEEeecCCCCCceeeecCCCCCCcccEEEccCCCCccccccccccccc
Q 037018 556 DPMPALEKLPHLEVLKLKQNSYSERKLACVGSGSFPQLKILHLKSMLWLEEWTMGAGAMPK 616 (663)
Q Consensus 556 ~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~l~~ 616 (663)
.....+..+++|+.|++++|.+. +.+++|+.|.++.+..-..+|..++.++.
T Consensus 139 ~~~~~~~~l~~L~~L~l~~N~~~---------~~~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 139 VPDGVFDRLTSLQYIWLHDNPWD---------CTCPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp CCTTTTTTCTTCCEEECCSCCBC---------CCTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred eCHHHhccCCCccEEEecCCCee---------cCCCCHHHHHHHHHhCCceeeccCccccC
Confidence 44444566666666666655332 34555666666654444455555554443
No 113
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.47 E-value=1e-15 Score=169.12 Aligned_cols=215 Identities=19% Similarity=0.095 Sum_probs=121.0
Q ss_pred CCCCCcCeEeccCCCCccchhhhcccccccEeeccCC-cccccchhhhcCcCCcEEEccCCCCCCCCCCCcCCCCCCcEe
Q 037018 392 ENLFHLKYLKLNIPSLNCLPSLLCTLLNLQTLEMPAS-YIDHSPEGIWMMQKLMHLNFGSINLPAPPKNYSSSLKNLIFI 470 (663)
Q Consensus 392 ~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~-~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L 470 (663)
..+++|+.|+|++|.++.+|..++++++|+.|++++| .+..+|..+.. .+.....|..++.+++|+.|
T Consensus 346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~-----------~~~~~~~~~~l~~l~~L~~L 414 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRA-----------LDPLLYEKETLQYFSTLKAV 414 (567)
T ss_dssp STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-----------HCTGGGHHHHHHHHHHHHHH
T ss_pred ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHh-----------cccccCCHHHHHHHHhcccC
Confidence 5678889999999988889999999999999988766 22222211110 01112233333444444444
Q ss_pred e-CcCCCCCChhhcCCCCCccEEEeecCCCccccchhhhhcCCCCCCEEEEeecCccccccccccccccCCCCceEEEEe
Q 037018 471 S-SLNPSSCTPDILGRLPNVQTLRISGDLSHYHSGVSKSLCELHKLECLQLVHEGRMWQLSRMVLSEYQFPPCLTQLSLS 549 (663)
Q Consensus 471 ~-l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~lp~~~~~l~~~l~~L~~L~L~ 549 (663)
+ +..+ .+.+|+.+.+.++ ....++. ..|+.|++++ +.++.+| .+.. +++|+.|+++
T Consensus 415 ~~l~~n---------~~~~L~~l~l~~n---~i~~l~~-----~~L~~L~Ls~-n~l~~lp----~~~~-l~~L~~L~Ls 471 (567)
T 1dce_A 415 DPMRAA---------YLDDLRSKFLLEN---SVLKMEY-----ADVRVLHLAH-KDLTVLC----HLEQ-LLLVTHLDLS 471 (567)
T ss_dssp CGGGHH---------HHHHHHHHHHHHH---HHHHHHH-----TTCSEEECTT-SCCSSCC----CGGG-GTTCCEEECC
T ss_pred cchhhc---------ccchhhhhhhhcc---cccccCc-----cCceEEEecC-CCCCCCc----Cccc-cccCcEeecC
Confidence 3 1111 0112222222222 1111111 2466666665 5666666 3555 6677777777
Q ss_pred cccCCCCChhhhcCCCCCcEEEeecCCCCCceeeecCCCCCCcccEEEccCCCCcccc--ccccccccccceEEeecCCC
Q 037018 550 NTQLMEDPMPALEKLPHLEVLKLKQNSYSERKLACVGSGSFPQLKILHLKSMLWLEEW--TMGAGAMPKLESLIVNPCAY 627 (663)
Q Consensus 550 ~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l--~~~~~~l~~L~~L~l~~c~~ 627 (663)
+|.++ ..+..++.+++|+.|+|++|.+++. + . ++.+++|+.|+|++| .+..+ |..++.+++|+.|++++|+.
T Consensus 472 ~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~l-p--~-l~~l~~L~~L~Ls~N-~l~~~~~p~~l~~l~~L~~L~L~~N~l 545 (567)
T 1dce_A 472 HNRLR-ALPPALAALRCLEVLQASDNALENV-D--G-VANLPRLQELLLCNN-RLQQSAAIQPLVSCPRLVLLNLQGNSL 545 (567)
T ss_dssp SSCCC-CCCGGGGGCTTCCEEECCSSCCCCC-G--G-GTTCSSCCEEECCSS-CCCSSSTTGGGGGCTTCCEEECTTSGG
T ss_pred ccccc-ccchhhhcCCCCCEEECCCCCCCCC-c--c-cCCCCCCcEEECCCC-CCCCCCCcHHHhcCCCCCEEEecCCcC
Confidence 77665 4455666777777777777766652 2 2 566777777777764 45554 66677777777777777764
Q ss_pred CCCCcc---ccCCCCCCCEEEe
Q 037018 628 LRKLPE---ELWCIKSLCKLEL 646 (663)
Q Consensus 628 l~~l~~---~l~~l~sL~~L~l 646 (663)
....|. .+..+++|+.|++
T Consensus 546 ~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 546 CQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp GGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCccHHHHHHHHCcccCccCC
Confidence 332221 1223677777653
No 114
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.45 E-value=2.1e-15 Score=166.63 Aligned_cols=177 Identities=20% Similarity=0.183 Sum_probs=106.3
Q ss_pred cCCCcccEEEecCCcCcccCccCCCCCCcCeEeccCCC--------------CccchhhhcccccccEee-ccCCccccc
Q 037018 369 KKFKHLRVLNLGSAILYQYPPGLENLFHLKYLKLNIPS--------------LNCLPSLLCTLLNLQTLE-MPASYIDHS 433 (663)
Q Consensus 369 ~~l~~Lr~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~--------------i~~lp~~i~~L~~L~~L~-L~~~~l~~l 433 (663)
..+++|+.|+|++|.++.+|..++++++|+.|+++++. ....|..++.+.+|+.|+ ++.+.+..+
T Consensus 346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L 425 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDL 425 (567)
T ss_dssp STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchh
Confidence 67899999999999999999999999999999997653 224567778888888888 555544443
Q ss_pred ch------hhhc--CcCCcEEEccCCCCCCCCCCCcCCCCCCcEeeCcCCC-CCChhhcCCCCCccEEEeecCCCccccc
Q 037018 434 PE------GIWM--MQKLMHLNFGSINLPAPPKNYSSSLKNLIFISSLNPS-SCTPDILGRLPNVQTLRISGDLSHYHSG 504 (663)
Q Consensus 434 p~------~l~~--l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 504 (663)
+. .+.. ...|+.|+++ ++....+|. ++.+++|+.|++++|. ..+|.
T Consensus 426 ~~l~l~~n~i~~l~~~~L~~L~Ls-~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~----------------------- 480 (567)
T 1dce_A 426 RSKFLLENSVLKMEYADVRVLHLA-HKDLTVLCH-LEQLLLVTHLDLSHNRLRALPP----------------------- 480 (567)
T ss_dssp HHHHHHHHHHHHHHHTTCSEEECT-TSCCSSCCC-GGGGTTCCEEECCSSCCCCCCG-----------------------
T ss_pred hhhhhhcccccccCccCceEEEec-CCCCCCCcC-ccccccCcEeecCcccccccch-----------------------
Confidence 32 1111 1246677776 333333443 5555555555555554 44444
Q ss_pred hhhhhcCCCCCCEEEEeecCccccccccccccccCCCCceEEEEecccCCCCC-hhhhcCCCCCcEEEeecCCCCC
Q 037018 505 VSKSLCELHKLECLQLVHEGRMWQLSRMVLSEYQFPPCLTQLSLSNTQLMEDP-MPALEKLPHLEVLKLKQNSYSE 579 (663)
Q Consensus 505 ~~~~l~~l~~L~~L~l~~~~~l~~lp~~~~~l~~~l~~L~~L~L~~~~l~~~~-~~~l~~l~~L~~L~L~~~~~~~ 579 (663)
.+..+++|+.|++++ |.++.+| .+.. +++|+.|++++|.+++.. +..++.+++|+.|+|++|.+++
T Consensus 481 ---~~~~l~~L~~L~Ls~-N~l~~lp----~l~~-l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~ 547 (567)
T 1dce_A 481 ---ALAALRCLEVLQASD-NALENVD----GVAN-LPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 547 (567)
T ss_dssp ---GGGGCTTCCEEECCS-SCCCCCG----GGTT-CSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGG
T ss_pred ---hhhcCCCCCEEECCC-CCCCCCc----ccCC-CCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCC
Confidence 444445555555553 4444444 3444 555555555555554443 4455555555555555555544
No 115
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.43 E-value=3.6e-13 Score=140.81 Aligned_cols=170 Identities=21% Similarity=0.205 Sum_probs=105.1
Q ss_pred cEEEecCCcCcccCccCCCCCCcCeEeccCCCCccchhh-hc-ccccccEeeccCCcccccch-hhhcCcCCcEEEccCC
Q 037018 375 RVLNLGSAILYQYPPGLENLFHLKYLKLNIPSLNCLPSL-LC-TLLNLQTLEMPASYIDHSPE-GIWMMQKLMHLNFGSI 451 (663)
Q Consensus 375 r~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~-i~-~L~~L~~L~L~~~~l~~lp~-~l~~l~~L~~L~l~~~ 451 (663)
++++++++.++.+|..+. ..+++|+|++|.++.++.. +. .+++|++|++++|.+..++. .+..+++|++|++++|
T Consensus 21 ~~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp TEEECCSSCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence 678899988888887654 4688999999999987654 44 78899999999998887764 4888889999999855
Q ss_pred CCCCCCCCCcCCCCCCcEeeCcCCC--CCChhhcCCCCCccEEEeecCCCccccchhhhh----cCCCCCCEEEEeecCc
Q 037018 452 NLPAPPKNYSSSLKNLIFISSLNPS--SCTPDILGRLPNVQTLRISGDLSHYHSGVSKSL----CELHKLECLQLVHEGR 525 (663)
Q Consensus 452 ~~~~~~~~~l~~l~~L~~L~l~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l----~~l~~L~~L~l~~~~~ 525 (663)
.+....+..+..+++|+.|+++++. ...+..+..+++|+.|++++|. . ..++..+ ..+++|+.|++++ +.
T Consensus 99 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~--l-~~l~~~~~~~~~~l~~L~~L~L~~-N~ 174 (361)
T 2xot_A 99 HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQ--I-SRFPVELIKDGNKLPKLMLLDLSS-NK 174 (361)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC--C-CSCCGGGTC----CTTCCEEECCS-SC
T ss_pred cCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCc--C-CeeCHHHhcCcccCCcCCEEECCC-CC
Confidence 4443334446666666666666665 2223445555666666665551 1 1222221 3345555555554 44
Q ss_pred cccccccccccccCCCC--ceEEEEecccC
Q 037018 526 MWQLSRMVLSEYQFPPC--LTQLSLSNTQL 553 (663)
Q Consensus 526 l~~lp~~~~~l~~~l~~--L~~L~L~~~~l 553 (663)
++.+|.. .+.. ++. |+.|++++|.+
T Consensus 175 l~~l~~~--~~~~-l~~~~l~~l~l~~N~~ 201 (361)
T 2xot_A 175 LKKLPLT--DLQK-LPAWVKNGLYLHNNPL 201 (361)
T ss_dssp CCCCCHH--HHHH-SCHHHHTTEECCSSCE
T ss_pred CCccCHH--Hhhh-ccHhhcceEEecCCCc
Confidence 5544421 2333 333 24455555543
No 116
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.43 E-value=1.3e-12 Score=126.33 Aligned_cols=99 Identities=12% Similarity=0.197 Sum_probs=51.8
Q ss_pred cEEEecCCcCcccCccCCCCCCcCeEeccCCCCccchh-hhcccccccEeeccCCccccc-chhhhcCcCCcEEEccCCC
Q 037018 375 RVLNLGSAILYQYPPGLENLFHLKYLKLNIPSLNCLPS-LLCTLLNLQTLEMPASYIDHS-PEGIWMMQKLMHLNFGSIN 452 (663)
Q Consensus 375 r~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~l~~l-p~~l~~l~~L~~L~l~~~~ 452 (663)
+.++++++.++.+|..+. ++|+.|++++|.++.+|. .+..+++|+.|++++|.+..+ |..+..+++|++|++++|.
T Consensus 14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp TEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred CEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 455566666665555443 456666666666665543 455566666666666655544 4445566666666666332
Q ss_pred CCCCCCC-CcCCCCCCcEeeCcCCC
Q 037018 453 LPAPPKN-YSSSLKNLIFISSLNPS 476 (663)
Q Consensus 453 ~~~~~~~-~l~~l~~L~~L~l~~~~ 476 (663)
+. .+|. .+..+++|+.|+++++.
T Consensus 92 l~-~l~~~~f~~l~~L~~L~L~~N~ 115 (220)
T 2v9t_B 92 IT-ELPKSLFEGLFSLQLLLLNANK 115 (220)
T ss_dssp CC-CCCTTTTTTCTTCCEEECCSSC
T ss_pred CC-ccCHhHccCCCCCCEEECCCCC
Confidence 22 2332 23344444444444443
No 117
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.42 E-value=1.2e-12 Score=126.50 Aligned_cols=121 Identities=15% Similarity=0.139 Sum_probs=68.5
Q ss_pred cEEEecCCcCcccCccCCCCCCcCeEeccCCCCccch--hhhcccccccEeeccCCcccccch-hhhcCcCCcEEEccCC
Q 037018 375 RVLNLGSAILYQYPPGLENLFHLKYLKLNIPSLNCLP--SLLCTLLNLQTLEMPASYIDHSPE-GIWMMQKLMHLNFGSI 451 (663)
Q Consensus 375 r~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp--~~i~~L~~L~~L~L~~~~l~~lp~-~l~~l~~L~~L~l~~~ 451 (663)
+.++++++.++.+|..+. ..+++|++++|.++.++ ..++.+++|+.|++++|.+..++. .+..+++|++|++++|
T Consensus 14 ~~l~~s~n~l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp TEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEeEeCCCCcccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence 467777777777776553 34567777777777663 236677777777777776666654 4666777777777644
Q ss_pred CCCCCCCCCcCCCCCCcEeeCcCCC--CCChhhcCCCCCccEEEeecC
Q 037018 452 NLPAPPKNYSSSLKNLIFISSLNPS--SCTPDILGRLPNVQTLRISGD 497 (663)
Q Consensus 452 ~~~~~~~~~l~~l~~L~~L~l~~~~--~~~~~~l~~l~~L~~L~l~~~ 497 (663)
.+....+..+..+++|++|+++++. ...+..+..+++|+.|++++|
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N 139 (220)
T 2v70_A 92 RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDN 139 (220)
T ss_dssp CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTS
T ss_pred ccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCC
Confidence 3333333334455555555554444 112233344444444444443
No 118
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.40 E-value=2.1e-12 Score=125.69 Aligned_cols=149 Identities=19% Similarity=0.243 Sum_probs=72.7
Q ss_pred cEEEecCCcCcccCccCCCCCCcCeEeccCCCCccc-hhhhcccccccEeeccCCcccccchh-hhcCcCCcEEEccCCC
Q 037018 375 RVLNLGSAILYQYPPGLENLFHLKYLKLNIPSLNCL-PSLLCTLLNLQTLEMPASYIDHSPEG-IWMMQKLMHLNFGSIN 452 (663)
Q Consensus 375 r~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~l~~lp~~-l~~l~~L~~L~l~~~~ 452 (663)
+.++.+++.++.+|..+. ++|++|++++|.+..+ |..+..+++|++|++++|.+..+|.. +..+++|++|++++|.
T Consensus 22 ~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~ 99 (229)
T 3e6j_A 22 TTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ 99 (229)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCc
Confidence 345555555555554443 5566666666665544 34455556666666666655555433 3455555555555332
Q ss_pred CCCCCCCCcCCCCCCcEeeCcCCCCCChhhcCCCCCccEEEeecCCCccccchhhhhcCCCCCCEEEEeecCcccccccc
Q 037018 453 LPAPPKNYSSSLKNLIFISSLNPSSCTPDILGRLPNVQTLRISGDLSHYHSGVSKSLCELHKLECLQLVHEGRMWQLSRM 532 (663)
Q Consensus 453 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~lp~~ 532 (663)
+....+..+ ..+++|+.|++++| ....+|..+..+++|+.|++++ +.+..+|..
T Consensus 100 l~~l~~~~~----------------------~~l~~L~~L~Ls~N---~l~~lp~~~~~l~~L~~L~L~~-N~l~~~~~~ 153 (229)
T 3e6j_A 100 LTVLPSAVF----------------------DRLVHLKELFMCCN---KLTELPRGIERLTHLTHLALDQ-NQLKSIPHG 153 (229)
T ss_dssp CCCCCTTTT----------------------TTCTTCCEEECCSS---CCCSCCTTGGGCTTCSEEECCS-SCCCCCCTT
T ss_pred CCccChhHh----------------------CcchhhCeEeccCC---cccccCcccccCCCCCEEECCC-CcCCccCHH
Confidence 222222222 33344444444444 1123344444555555555554 455544431
Q ss_pred ccccccCCCCceEEEEecccCC
Q 037018 533 VLSEYQFPPCLTQLSLSNTQLM 554 (663)
Q Consensus 533 ~~~l~~~l~~L~~L~L~~~~l~ 554 (663)
.+.. +++|+.|++++|.+.
T Consensus 154 --~~~~-l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 154 --AFDR-LSSLTHAYLFGNPWD 172 (229)
T ss_dssp --TTTT-CTTCCEEECTTSCBC
T ss_pred --HHhC-CCCCCEEEeeCCCcc
Confidence 2334 555566666555544
No 119
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.40 E-value=2.3e-12 Score=125.47 Aligned_cols=153 Identities=20% Similarity=0.193 Sum_probs=104.2
Q ss_pred CcCeEeccCCCCccchhhhcccccccEeeccCCccccc-chhhhcCcCCcEEEccCCCCCCCCCCCcCCCCCCcEeeCcC
Q 037018 396 HLKYLKLNIPSLNCLPSLLCTLLNLQTLEMPASYIDHS-PEGIWMMQKLMHLNFGSINLPAPPKNYSSSLKNLIFISSLN 474 (663)
Q Consensus 396 ~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~l-p~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 474 (663)
..+.++.+++.+..+|..+. ++|++|++++|.+..+ |..+..+++|++|++++|.+ ..+|
T Consensus 20 s~~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l-~~i~---------------- 80 (229)
T 3e6j_A 20 SGTTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALP---------------- 80 (229)
T ss_dssp ETTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCC----------------
T ss_pred eCCEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCC-CCcC----------------
Confidence 34566666666666665443 5666666666655544 33455556666666653222 2222
Q ss_pred CCCCChhhcCCCCCccEEEeecCCCccccchhhhhcCCCCCCEEEEeecCccccccccccccccCCCCceEEEEecccCC
Q 037018 475 PSSCTPDILGRLPNVQTLRISGDLSHYHSGVSKSLCELHKLECLQLVHEGRMWQLSRMVLSEYQFPPCLTQLSLSNTQLM 554 (663)
Q Consensus 475 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~lp~~~~~l~~~l~~L~~L~L~~~~l~ 554 (663)
+..+..+++|+.|++++| ......+..+..+++|+.|++++ +.+..+|. .+.. +++|+.|++++|.+.
T Consensus 81 -----~~~~~~l~~L~~L~Ls~N--~l~~l~~~~~~~l~~L~~L~Ls~-N~l~~lp~---~~~~-l~~L~~L~L~~N~l~ 148 (229)
T 3e6j_A 81 -----VGVFDSLTQLTVLDLGTN--QLTVLPSAVFDRLVHLKELFMCC-NKLTELPR---GIER-LTHLTHLALDQNQLK 148 (229)
T ss_dssp -----TTTTTTCTTCCEEECCSS--CCCCCCTTTTTTCTTCCEEECCS-SCCCSCCT---TGGG-CTTCSEEECCSSCCC
T ss_pred -----hhhcccCCCcCEEECCCC--cCCccChhHhCcchhhCeEeccC-CcccccCc---cccc-CCCCCEEECCCCcCC
Confidence 123456677777777777 34333344567889999999996 88889988 7888 999999999999887
Q ss_pred CCChhhhcCCCCCcEEEeecCCCCC
Q 037018 555 EDPMPALEKLPHLEVLKLKQNSYSE 579 (663)
Q Consensus 555 ~~~~~~l~~l~~L~~L~L~~~~~~~ 579 (663)
......+..+++|+.|++++|.+..
T Consensus 149 ~~~~~~~~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 149 SIPHGAFDRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp CCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred ccCHHHHhCCCCCCEEEeeCCCccC
Confidence 7666778889999999999887764
No 120
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.40 E-value=1.5e-12 Score=134.17 Aligned_cols=287 Identities=12% Similarity=0.008 Sum_probs=184.7
Q ss_pred CCcccEEEeecCccccccccchhHHhcCCCcccEEEecCCcCcccCccCCCCCCcCeEeccCCCCccchhhhcc------
Q 037018 343 DMYLQSFLNHTLESDRLALIDCENFCKKFKHLRVLNLGSAILYQYPPGLENLFHLKYLKLNIPSLNCLPSLLCT------ 416 (663)
Q Consensus 343 ~~~lr~L~l~~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~------ 416 (663)
..+++.|.+.+.-. ..++..+...+++|++|+|++|.+......-+.++.++++.+..+.+. +..|..
T Consensus 24 ~~~l~~L~l~g~i~----~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~--~~aF~~~~~~~~ 97 (329)
T 3sb4_A 24 ANSITHLTLTGKLN----AEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVP--AYAFSNVVNGVT 97 (329)
T ss_dssp HHHCSEEEEEEEEC----HHHHHHHHHSCTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEEC--TTTTEEEETTEE
T ss_pred hCceeEEEEecccc----HHHHHHHHHhhccCeEEecCcceeEEecCccccccccccccccccccC--HHHhcccccccc
Confidence 56788888877533 224455523389999999999997621111223334566666655332 134556
Q ss_pred --cccccEeeccCCcccccchh-hhcCcCCcEEEccCCCCCCCCCCCcCCCCCCcEeeCcCCC------CCChhhcCCCC
Q 037018 417 --LLNLQTLEMPASYIDHSPEG-IWMMQKLMHLNFGSINLPAPPKNYSSSLKNLIFISSLNPS------SCTPDILGRLP 487 (663)
Q Consensus 417 --L~~L~~L~L~~~~l~~lp~~-l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~------~~~~~~l~~l~ 487 (663)
+.+|+.|++.+ .+..++.. |..|++|+.+++..|......+..+..+.++..+...... ......+..+.
T Consensus 98 ~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~ 176 (329)
T 3sb4_A 98 KGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGE 176 (329)
T ss_dssp EECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESC
T ss_pred cccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccc
Confidence 89999999988 77777654 8889999999998554444445567777777766655421 12223345566
Q ss_pred Ccc-EEEeecCCCccccchhhhhcCCCCCCEEEEeecCccccccccccccccCCCCceEEEEecccCCCCChhhhcCCCC
Q 037018 488 NVQ-TLRISGDLSHYHSGVSKSLCELHKLECLQLVHEGRMWQLSRMVLSEYQFPPCLTQLSLSNTQLMEDPMPALEKLPH 566 (663)
Q Consensus 488 ~L~-~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~lp~~~~~l~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~ 566 (663)
+|+ .+.+.... .........-....++..+.+.+.-.-..+.. .... +++|+.|+|.+|.++......|.+|++
T Consensus 177 ~L~~~i~~~~~~-~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~---l~~~-~~~L~~l~L~~n~i~~I~~~aF~~~~~ 251 (329)
T 3sb4_A 177 PLETTIQVGAMG-KLEDEIMKAGLQPRDINFLTIEGKLDNADFKL---IRDY-MPNLVSLDISKTNATTIPDFTFAQKKY 251 (329)
T ss_dssp CCEEEEEECTTC-CHHHHHHHTTCCGGGCSEEEEEECCCHHHHHH---HHHH-CTTCCEEECTTBCCCEECTTTTTTCTT
T ss_pred ccceeEEecCCC-cHHHHHhhcccCccccceEEEeeeecHHHHHH---HHHh-cCCCeEEECCCCCcceecHhhhhCCCC
Confidence 776 55555442 11111111112356778888875211111111 1123 789999999998887777778999999
Q ss_pred CcEEEeecCCCCCceeeecCCCCCCccc-EEEccCCCCccccc-cccccccccceEEeecCCCCCCCccccCCCCCCCEE
Q 037018 567 LEVLKLKQNSYSERKLACVGSGSFPQLK-ILHLKSMLWLEEWT-MGAGAMPKLESLIVNPCAYLRKLPEELWCIKSLCKL 644 (663)
Q Consensus 567 L~~L~L~~~~~~~~~~~~~~~~~~~~L~-~L~L~~~~~l~~l~-~~~~~l~~L~~L~l~~c~~l~~l~~~l~~l~sL~~L 644 (663)
|+.|.|..| +.. ..... +.++++|+ .|.+.+ .++.++ ..+.+|++|+.|++.++....--+..+.+|++|+.|
T Consensus 252 L~~l~l~~n-i~~-I~~~a-F~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~l 326 (329)
T 3sb4_A 252 LLKIKLPHN-LKT-IGQRV-FSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLI 326 (329)
T ss_dssp CCEEECCTT-CCE-ECTTT-TTTCTTCCEEEEECT--TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEE
T ss_pred CCEEECCcc-cce-ehHHH-hhCChhccEEEEEcc--cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhh
Confidence 999999866 332 22222 77888999 999987 566665 568899999999998876443333478899999998
Q ss_pred Ee
Q 037018 645 EL 646 (663)
Q Consensus 645 ~l 646 (663)
+.
T Consensus 327 y~ 328 (329)
T 3sb4_A 327 YK 328 (329)
T ss_dssp EC
T ss_pred cc
Confidence 64
No 121
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.39 E-value=7.4e-13 Score=138.44 Aligned_cols=153 Identities=19% Similarity=0.152 Sum_probs=110.8
Q ss_pred CcccEEEecCCcCcccCcc-CC-CCCCcCeEeccCCCCccch-hhhcccccccEeeccCCcccccch-hhhcCcCCcEEE
Q 037018 372 KHLRVLNLGSAILYQYPPG-LE-NLFHLKYLKLNIPSLNCLP-SLLCTLLNLQTLEMPASYIDHSPE-GIWMMQKLMHLN 447 (663)
Q Consensus 372 ~~Lr~L~L~~~~l~~lp~~-~~-~l~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~l~~lp~-~l~~l~~L~~L~ 447 (663)
+.+++|+|++|.++.++.. +. .+++|++|+|++|.|..++ ..+..+++|++|++++|.+..++. .+..+++|++|+
T Consensus 39 ~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 118 (361)
T 2xot_A 39 SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLL 118 (361)
T ss_dssp TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEE
Confidence 4578888888888866544 55 7888888888888888776 457888888888888888877765 377888888888
Q ss_pred ccCCCCCCCCCCCcCCCCCCcEeeCcCCC-CCChhhc----CCCCCccEEEeecCCCccccchhhhhcCCCC--CCEEEE
Q 037018 448 FGSINLPAPPKNYSSSLKNLIFISSLNPS-SCTPDIL----GRLPNVQTLRISGDLSHYHSGVSKSLCELHK--LECLQL 520 (663)
Q Consensus 448 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~l----~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~--L~~L~l 520 (663)
+++|.+....|..+..+++|+.|+++++. ..++..+ ..+++|+.|++++| .....-+..+..++. |+.|++
T Consensus 119 L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N--~l~~l~~~~~~~l~~~~l~~l~l 196 (361)
T 2xot_A 119 LYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSN--KLKKLPLTDLQKLPAWVKNGLYL 196 (361)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSS--CCCCCCHHHHHHSCHHHHTTEEC
T ss_pred CCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCC--CCCccCHHHhhhccHhhcceEEe
Confidence 88555555556778888888888888887 5555443 56888888888888 333333345556665 477888
Q ss_pred eecCccc
Q 037018 521 VHEGRMW 527 (663)
Q Consensus 521 ~~~~~l~ 527 (663)
++ |.+.
T Consensus 197 ~~-N~~~ 202 (361)
T 2xot_A 197 HN-NPLE 202 (361)
T ss_dssp CS-SCEE
T ss_pred cC-CCcc
Confidence 86 5554
No 122
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.36 E-value=2.4e-13 Score=154.84 Aligned_cols=111 Identities=20% Similarity=0.163 Sum_probs=80.6
Q ss_pred hHHhcCCCcccEEEecCCcCcccCccCCCCCCcCeEeccCCCCccchhhhcccccccEeeccCCcccccchhhhcCcCCc
Q 037018 365 ENFCKKFKHLRVLNLGSAILYQYPPGLENLFHLKYLKLNIPSLNCLPSLLCTLLNLQTLEMPASYIDHSPEGIWMMQKLM 444 (663)
Q Consensus 365 ~~~~~~l~~Lr~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~l~~l~~L~ 444 (663)
+..+..+++|++|+|++|.+..+|..+..+++|++|+|++|.++.+|..+++|++|++|+|++|.+..+|..++.+++|+
T Consensus 217 ~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~ 296 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLK 296 (727)
T ss_dssp -----CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCS
T ss_pred hhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCC
Confidence 34447777788888887777777777777777888888887777777777777788888888777777777777777888
Q ss_pred EEEccCCCCCCCCCCCcCCCCCCcEeeCcCCC
Q 037018 445 HLNFGSINLPAPPKNYSSSLKNLIFISSLNPS 476 (663)
Q Consensus 445 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 476 (663)
+|+++ +|....+|..++.+++|+.|++++|.
T Consensus 297 ~L~L~-~N~l~~lp~~~~~l~~L~~L~L~~N~ 327 (727)
T 4b8c_D 297 YFYFF-DNMVTTLPWEFGNLCNLQFLGVEGNP 327 (727)
T ss_dssp EEECC-SSCCCCCCSSTTSCTTCCCEECTTSC
T ss_pred EEECC-CCCCCccChhhhcCCCccEEeCCCCc
Confidence 88887 44445677777777777777777776
No 123
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.36 E-value=2.9e-12 Score=123.89 Aligned_cols=149 Identities=15% Similarity=0.181 Sum_probs=90.1
Q ss_pred cCeEeccCCCCccchhhhcccccccEeeccCCcccccch-hhhcCcCCcEEEccCCCCCCCCCCCcCCCCCCcEeeCcCC
Q 037018 397 LKYLKLNIPSLNCLPSLLCTLLNLQTLEMPASYIDHSPE-GIWMMQKLMHLNFGSINLPAPPKNYSSSLKNLIFISSLNP 475 (663)
Q Consensus 397 L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~-~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 475 (663)
-+.++++++.++.+|..+. .+|+.|++++|.+..+|. .+..+++|++|++++|.+....|..+..+++|+.|+++++
T Consensus 13 ~~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 13 NNIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TTEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CCEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 3678888888888887654 688888888888777765 4777888888888855445444566666666666666665
Q ss_pred C-CCChh-hcCCCCCccEEEeecCCCccccchhhhhcCCCCCCEEEEeecCccccccccccccccCCCCceEEEEecccC
Q 037018 476 S-SCTPD-ILGRLPNVQTLRISGDLSHYHSGVSKSLCELHKLECLQLVHEGRMWQLSRMVLSEYQFPPCLTQLSLSNTQL 553 (663)
Q Consensus 476 ~-~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~lp~~~~~l~~~l~~L~~L~L~~~~l 553 (663)
. ..++. .+..+++|+.|++++| .+..++.. .+.. +++|+.|+|++|.+
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N---------------------------~l~~~~~~--~~~~-l~~L~~L~L~~N~l 140 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNAN---------------------------KINCLRVD--AFQD-LHNLNLLSLYDNKL 140 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSS---------------------------CCCCCCTT--TTTT-CTTCCEEECCSSCC
T ss_pred cCCccCHhHccCCCCCCEEECCCC---------------------------CCCEeCHH--HcCC-CCCCCEEECCCCcC
Confidence 5 33322 2344555555555554 44433220 3334 55555555555555
Q ss_pred CCCChhhhcCCCCCcEEEeecCCC
Q 037018 554 MEDPMPALEKLPHLEVLKLKQNSY 577 (663)
Q Consensus 554 ~~~~~~~l~~l~~L~~L~L~~~~~ 577 (663)
.......+..+++|+.|+|++|.+
T Consensus 141 ~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 141 QTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp SCCCTTTTTTCTTCCEEECCSSCE
T ss_pred CEECHHHHhCCCCCCEEEeCCCCc
Confidence 444444455555566666655544
No 124
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.36 E-value=1.6e-12 Score=119.94 Aligned_cols=127 Identities=20% Similarity=0.120 Sum_probs=83.7
Q ss_pred cCCCcccEEEecCCcCc--ccCccCCCCCCcCeEeccCCCCccchhhhcccccccEeeccCCcccc-cchhhhcCcCCcE
Q 037018 369 KKFKHLRVLNLGSAILY--QYPPGLENLFHLKYLKLNIPSLNCLPSLLCTLLNLQTLEMPASYIDH-SPEGIWMMQKLMH 445 (663)
Q Consensus 369 ~~l~~Lr~L~L~~~~l~--~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~-lp~~l~~l~~L~~ 445 (663)
...++|++|++++|.++ .+|..+..+++|++|++++|.++.+ ..++.+++|++|++++|.+.. +|..+..+++|++
T Consensus 21 ~~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 99 (168)
T 2ell_A 21 RTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH 99 (168)
T ss_dssp SCTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred CCcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence 34577888888888877 7777777888888888888888777 677788888888888887666 6666667888888
Q ss_pred EEccCCCCCCCCC--CCcCCCCCCcEeeCcCCC-CCChh----hcCCCCCccEEEeecC
Q 037018 446 LNFGSINLPAPPK--NYSSSLKNLIFISSLNPS-SCTPD----ILGRLPNVQTLRISGD 497 (663)
Q Consensus 446 L~l~~~~~~~~~~--~~l~~l~~L~~L~l~~~~-~~~~~----~l~~l~~L~~L~l~~~ 497 (663)
|++++| ....+| ..+..+++|+.|++.+|. ...+. .+..+++|+.|++++|
T Consensus 100 L~Ls~N-~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n 157 (168)
T 2ell_A 100 LNLSGN-KLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDR 157 (168)
T ss_dssp EECBSS-SCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEET
T ss_pred EeccCC-ccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCC
Confidence 888833 333333 345555555555555554 22222 3444444444444444
No 125
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.34 E-value=4.7e-12 Score=122.38 Aligned_cols=108 Identities=18% Similarity=0.139 Sum_probs=47.9
Q ss_pred CCCceEEEEecccCCCCChhhhcCCCCCcEEEeecCCCCCceeeecCCCCCCcccEEEccCCCCcccc-ccccccccccc
Q 037018 540 PPCLTQLSLSNTQLMEDPMPALEKLPHLEVLKLKQNSYSERKLACVGSGSFPQLKILHLKSMLWLEEW-TMGAGAMPKLE 618 (663)
Q Consensus 540 l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l-~~~~~~l~~L~ 618 (663)
+++|+.|++++|.++......+.++++|+.|+|++|.+.+..... +..+++|+.|+|++|. +..+ |..+..+++|+
T Consensus 56 l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~--~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~ 132 (220)
T 2v70_A 56 LPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKM--FKGLESLKTLMLRSNR-ITCVGNDSFIGLSSVR 132 (220)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGG--GTTCSSCCEEECTTSC-CCCBCTTSSTTCTTCS
T ss_pred CCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhH--hcCCcCCCEEECCCCc-CCeECHhHcCCCccCC
Confidence 444444444444444333334444444444444444444332221 2344444555554432 2222 33444445555
Q ss_pred eEEeecCCCCCCCccccCCCCCCCEEEecCCC
Q 037018 619 SLIVNPCAYLRKLPEELWCIKSLCKLELHWPQ 650 (663)
Q Consensus 619 ~L~l~~c~~l~~l~~~l~~l~sL~~L~l~~c~ 650 (663)
.|++++|......|..+..+++|+.|+++++|
T Consensus 133 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 133 LLSLYDNQITTVAPGAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp EEECTTSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred EEECCCCcCCEECHHHhcCCCCCCEEEecCcC
Confidence 55555544333334444445555555554433
No 126
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.32 E-value=2e-12 Score=116.75 Aligned_cols=124 Identities=17% Similarity=0.134 Sum_probs=81.0
Q ss_pred cCCCcccEEEecCCcCc--ccCccCCCCCCcCeEeccCCCCccchhhhcccccccEeeccCCcccc-cchhhhcCcCCcE
Q 037018 369 KKFKHLRVLNLGSAILY--QYPPGLENLFHLKYLKLNIPSLNCLPSLLCTLLNLQTLEMPASYIDH-SPEGIWMMQKLMH 445 (663)
Q Consensus 369 ~~l~~Lr~L~L~~~~l~--~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~-lp~~l~~l~~L~~ 445 (663)
...++|+.|++++|.++ .+|..++.+++|++|++++|.++.+ ..++.+++|++|++++|.+.. +|..+..+++|++
T Consensus 14 ~~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 92 (149)
T 2je0_A 14 RTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH 92 (149)
T ss_dssp CCGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred CCCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence 34567888888888876 6777777888888888888877776 567778888888888887666 6666667888888
Q ss_pred EEccCCCCCCCCC--CCcCCCCCCcEeeCcCCC-CCCh----hhcCCCCCccEEEe
Q 037018 446 LNFGSINLPAPPK--NYSSSLKNLIFISSLNPS-SCTP----DILGRLPNVQTLRI 494 (663)
Q Consensus 446 L~l~~~~~~~~~~--~~l~~l~~L~~L~l~~~~-~~~~----~~l~~l~~L~~L~l 494 (663)
|++++|. ...++ ..++.+++|+.|++++|. ...+ ..++.+++|+.|++
T Consensus 93 L~ls~N~-i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 93 LNLSGNK-IKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp EECTTSC-CCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETT
T ss_pred EECCCCc-CCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccC
Confidence 8887433 33222 445555555555555554 2222 23444555555443
No 127
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.31 E-value=6.6e-13 Score=151.27 Aligned_cols=128 Identities=16% Similarity=0.070 Sum_probs=102.2
Q ss_pred ecCCcCcccCccCCCCCCcCeEeccCCCCccchhhhcccccccEeeccCCcccccchhhhcCcCCcEEEccCCCCCCCCC
Q 037018 379 LGSAILYQYPPGLENLFHLKYLKLNIPSLNCLPSLLCTLLNLQTLEMPASYIDHSPEGIWMMQKLMHLNFGSINLPAPPK 458 (663)
Q Consensus 379 L~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~ 458 (663)
+..+.+...+..+..+.+|+.|+|++|.+..+|..+.++++|++|+|++|.+..+|..++.+++|++|++++|.+. .+|
T Consensus 208 ~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~-~lp 286 (727)
T 4b8c_D 208 DIENRMVMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLT-SLP 286 (727)
T ss_dssp --------------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCS-SCC
T ss_pred ccccceecChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCC-ccC
Confidence 3344444456778899999999999999999999999999999999999999999999999999999999955544 889
Q ss_pred CCcCCCCCCcEeeCcCCC-CCChhhcCCCCCccEEEeecCCCccccchhhhh
Q 037018 459 NYSSSLKNLIFISSLNPS-SCTPDILGRLPNVQTLRISGDLSHYHSGVSKSL 509 (663)
Q Consensus 459 ~~l~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l 509 (663)
..++.+++|+.|++++|. ..+|..++.+++|+.|++++| ......+..+
T Consensus 287 ~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N--~l~~~~p~~~ 336 (727)
T 4b8c_D 287 AELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGN--PLEKQFLKIL 336 (727)
T ss_dssp SSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTS--CCCSHHHHHH
T ss_pred hhhcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCC--ccCCCChHHH
Confidence 999999999999999998 888888999999999999999 4554444443
No 128
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.31 E-value=4.6e-12 Score=116.82 Aligned_cols=135 Identities=14% Similarity=0.074 Sum_probs=102.4
Q ss_pred CCCCcCeEeccCCCCc--cchhhhcccccccEeeccCCcccccchhhhcCcCCcEEEccCCCCCCCCCCCcCCCCCCcEe
Q 037018 393 NLFHLKYLKLNIPSLN--CLPSLLCTLLNLQTLEMPASYIDHSPEGIWMMQKLMHLNFGSINLPAPPKNYSSSLKNLIFI 470 (663)
Q Consensus 393 ~l~~L~~L~L~~~~i~--~lp~~i~~L~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L 470 (663)
..++|+.|++++|.+. .+|..+..+++|++|++++|.+..+ ..+..+++|++|++++|.+...+|..+..+++|+.|
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 4478999999999988 8888888999999999999988777 668889999999999555555566666678888888
Q ss_pred eCcCCC-CCCh--hhcCCCCCccEEEeecCCCccccchh---hhhcCCCCCCEEEEeecCccccccc
Q 037018 471 SSLNPS-SCTP--DILGRLPNVQTLRISGDLSHYHSGVS---KSLCELHKLECLQLVHEGRMWQLSR 531 (663)
Q Consensus 471 ~l~~~~-~~~~--~~l~~l~~L~~L~l~~~~~~~~~~~~---~~l~~l~~L~~L~l~~~~~l~~lp~ 531 (663)
++++|. ..++ ..++.+++|+.|++++| ......+ ..+..+++|++|++++ +.+..+|.
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N--~l~~~~~~~~~~~~~l~~L~~L~l~~-n~~~~~~~ 164 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKLECLKSLDLFNC--EVTNLNDYRESVFKLLPQLTYLDGYD-REDQEAPD 164 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSCSCCCEEECCSS--GGGTSTTHHHHHHTTCSSCCEETTEE-TTSCBCCS
T ss_pred eccCCccCcchhHHHHhcCCCCCEEEeeCC--cCcchHHHHHHHHHhCccCcEecCCC-CChhhccc
Confidence 888887 4443 67778888888888887 2322222 3667778888888876 56666664
No 129
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.26 E-value=4.7e-12 Score=117.75 Aligned_cols=126 Identities=18% Similarity=0.173 Sum_probs=83.8
Q ss_pred cCCCcccEEEecCCcCcccCccCCCCC-CcCeEeccCCCCccchhhhcccccccEeeccCCcccccchhh-hcCcCCcEE
Q 037018 369 KKFKHLRVLNLGSAILYQYPPGLENLF-HLKYLKLNIPSLNCLPSLLCTLLNLQTLEMPASYIDHSPEGI-WMMQKLMHL 446 (663)
Q Consensus 369 ~~l~~Lr~L~L~~~~l~~lp~~~~~l~-~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~l-~~l~~L~~L 446 (663)
..+++|+.|++++|.++.+|. +..+. +|++|++++|.++.+ ..++.+++|++|++++|.+..+|..+ ..+++|++|
T Consensus 16 ~~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 93 (176)
T 1a9n_A 16 TNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL 93 (176)
T ss_dssp ECTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred CCcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEE
Confidence 567778888888888776654 33443 788888888887776 46777888888888888777776554 777888888
Q ss_pred EccCCCCCCCCCC--CcCCCCCCcEeeCcCCC-CCChh----hcCCCCCccEEEeecC
Q 037018 447 NFGSINLPAPPKN--YSSSLKNLIFISSLNPS-SCTPD----ILGRLPNVQTLRISGD 497 (663)
Q Consensus 447 ~l~~~~~~~~~~~--~l~~l~~L~~L~l~~~~-~~~~~----~l~~l~~L~~L~l~~~ 497 (663)
+++ +|....+|. .+..+++|+.|++.+|. ...+. .+..+++|+.|+++++
T Consensus 94 ~L~-~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n 150 (176)
T 1a9n_A 94 ILT-NNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKV 150 (176)
T ss_dssp ECC-SCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEEC
T ss_pred ECC-CCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcC
Confidence 887 443344554 45566666666666655 33333 2555666666666655
No 130
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.25 E-value=6.3e-12 Score=113.36 Aligned_cols=126 Identities=18% Similarity=0.188 Sum_probs=102.2
Q ss_pred CCcccEEEeecCccccccccchhHHhcCCCcccEEEecCCcCcccCccCCCCCCcCeEeccCCCCcc-chhhhccccccc
Q 037018 343 DMYLQSFLNHTLESDRLALIDCENFCKKFKHLRVLNLGSAILYQYPPGLENLFHLKYLKLNIPSLNC-LPSLLCTLLNLQ 421 (663)
Q Consensus 343 ~~~lr~L~l~~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~-lp~~i~~L~~L~ 421 (663)
.++++.|.+.++... ...++..+..+++|++|++++|.++.+ ..++.+++|++|++++|.+.. +|..++.+++|+
T Consensus 16 ~~~l~~L~l~~n~l~---~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~ 91 (149)
T 2je0_A 16 PSDVKELVLDNSRSN---EGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLT 91 (149)
T ss_dssp GGGCSEEECTTCBCB---TTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCC
T ss_pred CccCeEEEccCCcCC---hhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCC
Confidence 567888888888664 113444558899999999999998876 678899999999999999997 888888899999
Q ss_pred EeeccCCcccccc--hhhhcCcCCcEEEccCCCCCCCCCC----CcCCCCCCcEeeCc
Q 037018 422 TLEMPASYIDHSP--EGIWMMQKLMHLNFGSINLPAPPKN----YSSSLKNLIFISSL 473 (663)
Q Consensus 422 ~L~L~~~~l~~lp--~~l~~l~~L~~L~l~~~~~~~~~~~----~l~~l~~L~~L~l~ 473 (663)
+|++++|.+..+| ..+..+++|++|++++|.+ ...+. .+..+++|+.|+++
T Consensus 92 ~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l-~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 92 HLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEV-TNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp EEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGG-GGSTTHHHHHHHHCTTCCEETTB
T ss_pred EEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcc-cchHHHHHHHHHHCCCcccccCC
Confidence 9999999888865 6789999999999994443 44443 67888999998875
No 131
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.24 E-value=2.9e-11 Score=114.15 Aligned_cols=122 Identities=16% Similarity=0.203 Sum_probs=89.4
Q ss_pred cEEEecCCcCcccCccCCCCCCcCeEeccCCCCccchhh--hcccccccEeeccCCccccc-chhhhcCcCCcEEEccCC
Q 037018 375 RVLNLGSAILYQYPPGLENLFHLKYLKLNIPSLNCLPSL--LCTLLNLQTLEMPASYIDHS-PEGIWMMQKLMHLNFGSI 451 (663)
Q Consensus 375 r~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~--i~~L~~L~~L~L~~~~l~~l-p~~l~~l~~L~~L~l~~~ 451 (663)
++++++++.++.+|..+.. +|++|++++|.+..++.. ++.+++|++|++++|.+..+ |..+..+++|++|++++|
T Consensus 11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp TEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence 6788888888888876643 888888888888877653 77888888888888877666 556788888888888855
Q ss_pred CCCCCCCCCcCCCCCCcEeeCcCCC--CCChhhcCCCCCccEEEeecCC
Q 037018 452 NLPAPPKNYSSSLKNLIFISSLNPS--SCTPDILGRLPNVQTLRISGDL 498 (663)
Q Consensus 452 ~~~~~~~~~l~~l~~L~~L~l~~~~--~~~~~~l~~l~~L~~L~l~~~~ 498 (663)
.+....+..+..+++|+.|+++++. ...+..++.+++|+.|++++|.
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNP 137 (192)
T ss_dssp CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCC
T ss_pred cCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCC
Confidence 5555555557777777777777776 3335566677777777777763
No 132
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.23 E-value=6.7e-11 Score=111.64 Aligned_cols=122 Identities=20% Similarity=0.256 Sum_probs=95.0
Q ss_pred cEEEecCCcCcccCccCCCCCCcCeEeccCCCCccchhhhcccccccEeeccCCcccccch-hhhcCcCCcEEEccCCCC
Q 037018 375 RVLNLGSAILYQYPPGLENLFHLKYLKLNIPSLNCLPSLLCTLLNLQTLEMPASYIDHSPE-GIWMMQKLMHLNFGSINL 453 (663)
Q Consensus 375 r~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~-~l~~l~~L~~L~l~~~~~ 453 (663)
++++++++.++.+|..+. ++|++|++++|.++.+|..+..+++|++|++++|.+..++. .+..+++|++|++++|.+
T Consensus 13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l 90 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90 (193)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CEEEcCCCCCCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCcc
Confidence 578888888888887654 58899999999888888888888999999999988877764 478888999999985555
Q ss_pred CCCCCCCcCCCCCCcEeeCcCCC-CCChh-hcCCCCCccEEEeecCC
Q 037018 454 PAPPKNYSSSLKNLIFISSLNPS-SCTPD-ILGRLPNVQTLRISGDL 498 (663)
Q Consensus 454 ~~~~~~~l~~l~~L~~L~l~~~~-~~~~~-~l~~l~~L~~L~l~~~~ 498 (663)
....+..+..+++|+.|++.++. ..++. .+..+++|+.|++++|.
T Consensus 91 ~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 91 RCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp CBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred CEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCC
Confidence 55555567788888888888877 44443 46777788888887774
No 133
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.19 E-value=2.1e-11 Score=113.32 Aligned_cols=127 Identities=13% Similarity=0.092 Sum_probs=104.2
Q ss_pred CCcccEEEeecCccccccccchhHHhcCCCcccEEEecCCcCcccCccCCCCCCcCeEeccCCCCccchhhh-ccccccc
Q 037018 343 DMYLQSFLNHTLESDRLALIDCENFCKKFKHLRVLNLGSAILYQYPPGLENLFHLKYLKLNIPSLNCLPSLL-CTLLNLQ 421 (663)
Q Consensus 343 ~~~lr~L~l~~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i-~~L~~L~ 421 (663)
..+++.|.+.++... .++.+....++|++|++++|.++.+ ..++.+++|++|++++|.++.+|..+ +.+++|+
T Consensus 18 ~~~L~~L~l~~n~l~-----~i~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 91 (176)
T 1a9n_A 18 AVRDRELDLRGYKIP-----VIENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT 91 (176)
T ss_dssp TTSCEEEECTTSCCC-----SCCCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred cCCceEEEeeCCCCc-----hhHHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCC
Confidence 678888888888765 3344534445999999999999877 57889999999999999999888554 8899999
Q ss_pred EeeccCCcccccch--hhhcCcCCcEEEccCCCCCCCCCCC----cCCCCCCcEeeCcCCC
Q 037018 422 TLEMPASYIDHSPE--GIWMMQKLMHLNFGSINLPAPPKNY----SSSLKNLIFISSLNPS 476 (663)
Q Consensus 422 ~L~L~~~~l~~lp~--~l~~l~~L~~L~l~~~~~~~~~~~~----l~~l~~L~~L~l~~~~ 476 (663)
+|++++|.+..+|. .+..+++|++|+++ +|.....|.. +..+++|+.|++..+.
T Consensus 92 ~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~-~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 92 ELILTNNSLVELGDLDPLASLKSLTYLCIL-RNPVTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp EEECCSCCCCCGGGGGGGGGCTTCCEEECC-SSGGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred EEECCCCcCCcchhhHhhhcCCCCCEEEec-CCCCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 99999998888887 78899999999999 4444456664 7889999999998876
No 134
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.17 E-value=1.9e-09 Score=113.59 Aligned_cols=243 Identities=11% Similarity=0.135 Sum_probs=139.4
Q ss_pred cccEEEecCCcCcccCc-cCCCCCCcCeEeccCCCCccch-hhhcccccccEeeccCCcccccchhhhcCcCCcEEEccC
Q 037018 373 HLRVLNLGSAILYQYPP-GLENLFHLKYLKLNIPSLNCLP-SLLCTLLNLQTLEMPASYIDHSPEGIWMMQKLMHLNFGS 450 (663)
Q Consensus 373 ~Lr~L~L~~~~l~~lp~-~~~~l~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~l~~ 450 (663)
+|+.+.+..+ ++.++. .|.+ .+|+.+.+.. .++.++ ..+.++.+|+.+++.++.+..++.....+.+|+.+.+.
T Consensus 136 ~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp- 211 (401)
T 4fdw_A 136 QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLP- 211 (401)
T ss_dssp CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECC-
T ss_pred CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEEeC-
Confidence 4555555443 333332 2333 2455555543 344443 34445555555555555555554443334455555554
Q ss_pred CCCCCCCCCCcCCCCCCcEeeCcCCCCCChhhcCCCCCccEEEeecCCCccccchhhhhcCCCCCCEEEEeecCcccccc
Q 037018 451 INLPAPPKNYSSSLKNLIFISSLNPSSCTPDILGRLPNVQTLRISGDLSHYHSGVSKSLCELHKLECLQLVHEGRMWQLS 530 (663)
Q Consensus 451 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~lp 530 (663)
++.... -...+.++++|+.+.+..+ ....-...+.. .+|+.+.+. +.+..++
T Consensus 212 ~~l~~I----------------------~~~aF~~~~~L~~l~l~~~---l~~I~~~aF~~-~~L~~i~lp--~~i~~I~ 263 (401)
T 4fdw_A 212 VTLKEI----------------------GSQAFLKTSQLKTIEIPEN---VSTIGQEAFRE-SGITTVKLP--NGVTNIA 263 (401)
T ss_dssp TTCCEE----------------------CTTTTTTCTTCCCEECCTT---CCEECTTTTTT-CCCSEEEEE--TTCCEEC
T ss_pred Cchhee----------------------hhhHhhCCCCCCEEecCCC---ccCcccccccc-CCccEEEeC--CCccEEC
Confidence 222111 2234555666666666543 22222233444 678888884 5566665
Q ss_pred ccccccccCCCCceEEEEecccCC-----CCChhhhcCCCCCcEEEeecCCCCCceeeecCCCCCCcccEEEccCCCCcc
Q 037018 531 RMVLSEYQFPPCLTQLSLSNTQLM-----EDPMPALEKLPHLEVLKLKQNSYSERKLACVGSGSFPQLKILHLKSMLWLE 605 (663)
Q Consensus 531 ~~~~~l~~~l~~L~~L~L~~~~l~-----~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~ 605 (663)
.. .+.. +++|+.+++.++.+. ......|.+|++|+.+.|. +.+.... ... +.++.+|+.+.|.. ++.
T Consensus 264 ~~--aF~~-c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~-~~a-F~~c~~L~~l~lp~--~l~ 335 (401)
T 4fdw_A 264 SR--AFYY-CPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILG-QGL-LGGNRKVTQLTIPA--NVT 335 (401)
T ss_dssp TT--TTTT-CTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEEC-TTT-TTTCCSCCEEEECT--TCC
T ss_pred hh--HhhC-CCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEh-hhh-hcCCCCccEEEECc--ccc
Confidence 52 4555 888888888877643 2344578889999999998 4443222 122 67888999999975 366
Q ss_pred ccc-cccccccccceEEeecCCCCCCCccccCCCC-CCCEEEecCCCHHHHHhhcc
Q 037018 606 EWT-MGAGAMPKLESLIVNPCAYLRKLPEELWCIK-SLCKLELHWPQPELRKRLRA 659 (663)
Q Consensus 606 ~l~-~~~~~l~~L~~L~l~~c~~l~~l~~~l~~l~-sL~~L~l~~c~~~~~~~~~~ 659 (663)
.+. ..+.++ +|+.|.+.++......+..+.+++ +++.|.+-. ...+.++.
T Consensus 336 ~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~---~~~~~y~~ 387 (401)
T 4fdw_A 336 QINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPA---ESVEKYKN 387 (401)
T ss_dssp EECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECG---GGHHHHHH
T ss_pred EEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCH---HHHHHhhh
Confidence 554 457778 999999999865544444566664 788888844 44444443
No 135
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.14 E-value=1.1e-10 Score=110.05 Aligned_cols=99 Identities=10% Similarity=0.057 Sum_probs=66.2
Q ss_pred cCeEeccCCCCccchhhhcccccccEeeccCCcccccchh--hhcCcCCcEEEccCCCCCCCCCCCcCCCCCCcEeeCcC
Q 037018 397 LKYLKLNIPSLNCLPSLLCTLLNLQTLEMPASYIDHSPEG--IWMMQKLMHLNFGSINLPAPPKNYSSSLKNLIFISSLN 474 (663)
Q Consensus 397 L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~--l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 474 (663)
-++++++++.++.+|..+.. +|++|++++|.+..++.. +..+++|++|++++|.+....|..+..+++|++|++++
T Consensus 10 ~~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 10 GTTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TTEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CCEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 37888988888888876643 888899988888777653 78888888888885555555566666666666666666
Q ss_pred CC-CC-ChhhcCCCCCccEEEeecC
Q 037018 475 PS-SC-TPDILGRLPNVQTLRISGD 497 (663)
Q Consensus 475 ~~-~~-~~~~l~~l~~L~~L~l~~~ 497 (663)
+. .. .+..++.+++|+.|++++|
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N 112 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDN 112 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSS
T ss_pred CcCCccCHHHhcCCCCCCEEECCCC
Confidence 55 21 2222444444444444444
No 136
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.14 E-value=2.2e-10 Score=117.92 Aligned_cols=282 Identities=11% Similarity=-0.020 Sum_probs=178.2
Q ss_pred CceeEEEEEeccc-ccccccccCCCcccEEEeecCccccccccchhHHhcCCCcccEEEecCCcCcccCccCCC------
Q 037018 321 ANVKRCFILEDLI-DEFISLEHSDMYLQSFLNHTLESDRLALIDCENFCKKFKHLRVLNLGSAILYQYPPGLEN------ 393 (663)
Q Consensus 321 ~~~r~lsi~~~~~-~~~~~~~~~~~~lr~L~l~~~~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~l~~lp~~~~~------ 393 (663)
.++.++.+.+..- .++..+....++|+.|++.++........ . ..++.++.+.+..+.+. +..|.+
T Consensus 25 ~~l~~L~l~g~i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~--~---~~~~~~~~~~~~~~~I~--~~aF~~~~~~~~ 97 (329)
T 3sb4_A 25 NSITHLTLTGKLNAEDFRHLRDEFPSLKVLDISNAEIKMYSGK--A---GTYPNGKFYIYMANFVP--AYAFSNVVNGVT 97 (329)
T ss_dssp HHCSEEEEEEEECHHHHHHHHHSCTTCCEEEEEEEEECCEEES--S---SSSGGGCCEEECTTEEC--TTTTEEEETTEE
T ss_pred CceeEEEEeccccHHHHHHHHHhhccCeEEecCcceeEEecCc--c---ccccccccccccccccC--HHHhcccccccc
Confidence 3567777776431 11111111167899999998876410000 1 22333455555555332 123556
Q ss_pred --CCCcCeEeccCCCCccch-hhhcccccccEeeccCCcccccchh-hhcCcCCcEEEccCC----CCCCCCCCCcCCCC
Q 037018 394 --LFHLKYLKLNIPSLNCLP-SLLCTLLNLQTLEMPASYIDHSPEG-IWMMQKLMHLNFGSI----NLPAPPKNYSSSLK 465 (663)
Q Consensus 394 --l~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~l~~lp~~-l~~l~~L~~L~l~~~----~~~~~~~~~l~~l~ 465 (663)
+.+|+.|.|.. .++.++ ..|..|.+|+.|+++++.+..++.. |..+.++..+..... .....-...+..+.
T Consensus 98 ~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~ 176 (329)
T 3sb4_A 98 KGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGE 176 (329)
T ss_dssp EECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESC
T ss_pred cccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccc
Confidence 88999999988 788776 4577889999999998877666554 666777777766521 11111222344556
Q ss_pred CCc-EeeCcCCCCCChhh----cCCCCCccEEEeecCCCccccchhhhhcCCCCCCEEEEeecCccccccccccccccCC
Q 037018 466 NLI-FISSLNPSSCTPDI----LGRLPNVQTLRISGDLSHYHSGVSKSLCELHKLECLQLVHEGRMWQLSRMVLSEYQFP 540 (663)
Q Consensus 466 ~L~-~L~l~~~~~~~~~~----l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~lp~~~~~l~~~l 540 (663)
.|+ .+.+.... .++.. --...++..+.+.+. ............+++|+.|++++ +.++.+|.. .+.. +
T Consensus 177 ~L~~~i~~~~~~-~l~~~~~~~~~~~~~~~~l~~~~~--l~~~~~~~l~~~~~~L~~l~L~~-n~i~~I~~~--aF~~-~ 249 (329)
T 3sb4_A 177 PLETTIQVGAMG-KLEDEIMKAGLQPRDINFLTIEGK--LDNADFKLIRDYMPNLVSLDISK-TNATTIPDF--TFAQ-K 249 (329)
T ss_dssp CCEEEEEECTTC-CHHHHHHHTTCCGGGCSEEEEEEC--CCHHHHHHHHHHCTTCCEEECTT-BCCCEECTT--TTTT-C
T ss_pred ccceeEEecCCC-cHHHHHhhcccCccccceEEEeee--ecHHHHHHHHHhcCCCeEEECCC-CCcceecHh--hhhC-C
Confidence 665 34333222 22221 123567788888876 22222222223489999999996 778888872 4555 9
Q ss_pred CCceEEEEecccCCCCChhhhcCCCCCc-EEEeecCCCCCceeeecCCCCCCcccEEEccCCCCcccccc-ccccccccc
Q 037018 541 PCLTQLSLSNTQLMEDPMPALEKLPHLE-VLKLKQNSYSERKLACVGSGSFPQLKILHLKSMLWLEEWTM-GAGAMPKLE 618 (663)
Q Consensus 541 ~~L~~L~L~~~~l~~~~~~~l~~l~~L~-~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~-~~~~l~~L~ 618 (663)
++|+.|++.++ +......+|.+|++|+ .+.+.. .+..... .. +.++++|+.|++.. +.+..++. .+.++++|+
T Consensus 250 ~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~-~a-F~~c~~L~~l~l~~-n~i~~I~~~aF~~~~~L~ 324 (329)
T 3sb4_A 250 KYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEF-GA-FMGCDNLRYVLATG-DKITTLGDELFGNGVPSK 324 (329)
T ss_dssp TTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECT-TT-TTTCTTEEEEEECS-SCCCEECTTTTCTTCCCC
T ss_pred CCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEch-hh-hhCCccCCEEEeCC-CccCccchhhhcCCcchh
Confidence 99999999987 5666677899999999 999985 4433222 22 78899999999987 46776664 688999999
Q ss_pred eEEe
Q 037018 619 SLIV 622 (663)
Q Consensus 619 ~L~l 622 (663)
.|+.
T Consensus 325 ~ly~ 328 (329)
T 3sb4_A 325 LIYK 328 (329)
T ss_dssp EEEC
T ss_pred hhcc
Confidence 9864
No 137
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.12 E-value=2.4e-09 Score=112.89 Aligned_cols=217 Identities=11% Similarity=0.067 Sum_probs=133.9
Q ss_pred CCcccEEEeecCccccccccch-hHHhcCCCcccEEEecCCcCcccC-ccCCCCCCcCeEeccCCCCccchhhhcccccc
Q 037018 343 DMYLQSFLNHTLESDRLALIDC-ENFCKKFKHLRVLNLGSAILYQYP-PGLENLFHLKYLKLNIPSLNCLPSLLCTLLNL 420 (663)
Q Consensus 343 ~~~lr~L~l~~~~~~~~~~~~l-~~~~~~l~~Lr~L~L~~~~l~~lp-~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L 420 (663)
..+++.+.+..+ .. .+ ...|..+ +|+.+.+.+ .++.++ ..|.+|.+|+.+++..|.++.+|.....+.+|
T Consensus 134 ~~~L~~i~l~~~-i~-----~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L 205 (401)
T 4fdw_A 134 NSQIAKVVLNEG-LK-----SIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGI 205 (401)
T ss_dssp TCCCSEEECCTT-CC-----EECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCC
T ss_pred cCCccEEEeCCC-cc-----EECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEeeccc
Confidence 346788776554 21 33 2233665 699999986 666555 56899999999999999999998766667999
Q ss_pred cEeeccCCcccccch-hhhcCcCCcEEEccCCCCCCCCCCCcCCCCCCcEeeCcCCC-CCChhhcCCCCCccEEEeecCC
Q 037018 421 QTLEMPASYIDHSPE-GIWMMQKLMHLNFGSINLPAPPKNYSSSLKNLIFISSLNPS-SCTPDILGRLPNVQTLRISGDL 498 (663)
Q Consensus 421 ~~L~L~~~~l~~lp~-~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~ 498 (663)
+.+.+..+ +..++. .|..+++|+.+.+. ++....-...+.. .+|+.+.+...- ..-...+.+|++|+.+.+.++.
T Consensus 206 ~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~-~~l~~I~~~aF~~-~~L~~i~lp~~i~~I~~~aF~~c~~L~~l~l~~~~ 282 (401)
T 4fdw_A 206 EEVLLPVT-LKEIGSQAFLKTSQLKTIEIP-ENVSTIGQEAFRE-SGITTVKLPNGVTNIASRAFYYCPELAEVTTYGST 282 (401)
T ss_dssp SEEECCTT-CCEECTTTTTTCTTCCCEECC-TTCCEECTTTTTT-CCCSEEEEETTCCEECTTTTTTCTTCCEEEEESSC
T ss_pred CEEEeCCc-hheehhhHhhCCCCCCEEecC-CCccCcccccccc-CCccEEEeCCCccEEChhHhhCCCCCCEEEeCCcc
Confidence 99999855 666654 47889999999998 4443323333444 567777764433 2223456677777777776652
Q ss_pred Cc---cccchhhhhcCCCCCCEEEEeecCccccccccccccccCCCCceEEEEecccCCCCChhhhcCCCCCcEEEeecC
Q 037018 499 SH---YHSGVSKSLCELHKLECLQLVHEGRMWQLSRMVLSEYQFPPCLTQLSLSNTQLMEDPMPALEKLPHLEVLKLKQN 575 (663)
Q Consensus 499 ~~---~~~~~~~~l~~l~~L~~L~l~~~~~l~~lp~~~~~l~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~ 575 (663)
.. ....-...+..+++|+.+.+. +.+..++.. .+.. +++|+.+.|..+ +......+|.++ +|+.+.+.+|
T Consensus 283 ~~~~~~~~I~~~aF~~c~~L~~l~l~--~~i~~I~~~--aF~~-c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n 355 (401)
T 4fdw_A 283 FNDDPEAMIHPYCLEGCPKLARFEIP--ESIRILGQG--LLGG-NRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGT 355 (401)
T ss_dssp CCCCTTCEECTTTTTTCTTCCEECCC--TTCCEECTT--TTTT-CCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCS
T ss_pred ccCCcccEECHHHhhCCccCCeEEeC--CceEEEhhh--hhcC-CCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCC
Confidence 00 001223445566666666665 335555441 2333 566666666433 333334455555 6666666655
Q ss_pred CC
Q 037018 576 SY 577 (663)
Q Consensus 576 ~~ 577 (663)
..
T Consensus 356 ~~ 357 (401)
T 4fdw_A 356 TP 357 (401)
T ss_dssp SC
T ss_pred CC
Confidence 44
No 138
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.11 E-value=3.8e-10 Score=106.45 Aligned_cols=99 Identities=12% Similarity=0.195 Sum_probs=69.9
Q ss_pred cCeEeccCCCCccchhhhcccccccEeeccCCcccccchhhhcCcCCcEEEccCCCCCCCCCCCcCCCCCCcEeeCcCCC
Q 037018 397 LKYLKLNIPSLNCLPSLLCTLLNLQTLEMPASYIDHSPEGIWMMQKLMHLNFGSINLPAPPKNYSSSLKNLIFISSLNPS 476 (663)
Q Consensus 397 L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 476 (663)
-++++++++.++.+|..+. .+|++|++++|.+..+|..+..+++|++|++++|.+....+..+..+++|++|+++++.
T Consensus 12 ~~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 12 DTVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCEEEcCCCCCCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence 3688999999999987653 68999999999888898889999999999999555454444556666666666666665
Q ss_pred -C-CChhhcCCCCCccEEEeecC
Q 037018 477 -S-CTPDILGRLPNVQTLRISGD 497 (663)
Q Consensus 477 -~-~~~~~l~~l~~L~~L~l~~~ 497 (663)
. ..+..+..+++|+.|++++|
T Consensus 90 l~~i~~~~f~~l~~L~~L~L~~N 112 (193)
T 2wfh_A 90 LRCIPPRTFDGLKSLRLLSLHGN 112 (193)
T ss_dssp CCBCCTTTTTTCTTCCEEECCSS
T ss_pred cCEeCHHHhCCCCCCCEEECCCC
Confidence 2 22234455555555555554
No 139
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.11 E-value=9.6e-13 Score=125.05 Aligned_cols=105 Identities=21% Similarity=0.148 Sum_probs=45.5
Q ss_pred cCCCCCCcCeEeccCCCCccchhhhcccccccEeeccCCcccccchhhhcCcCCcEEEccCCCCCCCCCCCcCCCCCCcE
Q 037018 390 GLENLFHLKYLKLNIPSLNCLPSLLCTLLNLQTLEMPASYIDHSPEGIWMMQKLMHLNFGSINLPAPPKNYSSSLKNLIF 469 (663)
Q Consensus 390 ~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 469 (663)
.++.+++|++|++++|.++.+| .++.+++|++|++++|.+..+|..+..+++|++|++++| ....+| .+..+++|+.
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N-~l~~l~-~~~~l~~L~~ 119 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYN-QIASLS-GIEKLVNLRV 119 (198)
T ss_dssp HHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEE-ECCCHH-HHHHHHHSSE
T ss_pred HHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCC-cCCcCC-ccccCCCCCE
Confidence 3444444555555444444444 444444455555544444444444444444444444422 111222 2333333333
Q ss_pred eeCcCCC-CCCh--hhcCCCCCccEEEeecC
Q 037018 470 ISSLNPS-SCTP--DILGRLPNVQTLRISGD 497 (663)
Q Consensus 470 L~l~~~~-~~~~--~~l~~l~~L~~L~l~~~ 497 (663)
|++.++. ...+ ..+..+++|+.|++++|
T Consensus 120 L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N 150 (198)
T 1ds9_A 120 LYMSNNKITNWGEIDKLAALDKLEDLLLAGN 150 (198)
T ss_dssp EEESEEECCCHHHHHHHTTTTTCSEEEECSC
T ss_pred EECCCCcCCchhHHHHHhcCCCCCEEEecCC
Confidence 3333333 2211 23445555555555555
No 140
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.07 E-value=1.2e-09 Score=101.39 Aligned_cols=122 Identities=23% Similarity=0.307 Sum_probs=75.7
Q ss_pred ccEEEecCCcCcccCccCCCCCCcCeEeccCCCCccchh-hhcccccccEeeccCCcccccchh-hhcCcCCcEEEccCC
Q 037018 374 LRVLNLGSAILYQYPPGLENLFHLKYLKLNIPSLNCLPS-LLCTLLNLQTLEMPASYIDHSPEG-IWMMQKLMHLNFGSI 451 (663)
Q Consensus 374 Lr~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~l~~lp~~-l~~l~~L~~L~l~~~ 451 (663)
.+.++++++.++.+|..+. ++|++|++++|.++.+|. .++.+++|++|++++|.+..+|.. +..+++|++|++++|
T Consensus 9 ~~~l~~~~~~l~~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TTEEECCSSCCSSCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEecCCCCccCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 3566777777666664432 577777777777776654 346677777777777766666544 466777777777744
Q ss_pred CCCCCCCCCcCCCCCCcEeeCcCCC-CCChh-hcCCCCCccEEEeecC
Q 037018 452 NLPAPPKNYSSSLKNLIFISSLNPS-SCTPD-ILGRLPNVQTLRISGD 497 (663)
Q Consensus 452 ~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~-~l~~l~~L~~L~l~~~ 497 (663)
.+....+..+..+++|+.|++.++. ..++. .+..+++|+.|++++|
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 134 (177)
T 2o6r_A 87 KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134 (177)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred CccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCC
Confidence 4443333345666666666666665 33332 3455666666666666
No 141
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.06 E-value=4.2e-12 Score=120.57 Aligned_cols=128 Identities=17% Similarity=0.155 Sum_probs=103.2
Q ss_pred chhHHhcCCCcccEEEecCCcCcccCccCCCCCCcCeEeccCCCCccchhhhcccccccEeeccCCcccccchhhhcCcC
Q 037018 363 DCENFCKKFKHLRVLNLGSAILYQYPPGLENLFHLKYLKLNIPSLNCLPSLLCTLLNLQTLEMPASYIDHSPEGIWMMQK 442 (663)
Q Consensus 363 ~l~~~~~~l~~Lr~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~l~~l~~ 442 (663)
.++..+..+++|++|++++|.++.+| .+..+++|++|++++|.++.+|..++.+++|++|++++|.+..+| .+..+++
T Consensus 39 ~l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~ 116 (198)
T 1ds9_A 39 KMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEKLVN 116 (198)
T ss_dssp CCHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHHHHH
T ss_pred hhhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-ccccCCC
Confidence 34434489999999999999998888 888899999999999999999988888899999999999888887 6889999
Q ss_pred CcEEEccCCCCCCCCC--CCcCCCCCCcEeeCcCCC-CCC-hh----------hcCCCCCccEEE
Q 037018 443 LMHLNFGSINLPAPPK--NYSSSLKNLIFISSLNPS-SCT-PD----------ILGRLPNVQTLR 493 (663)
Q Consensus 443 L~~L~l~~~~~~~~~~--~~l~~l~~L~~L~l~~~~-~~~-~~----------~l~~l~~L~~L~ 493 (663)
|++|++++| ....++ ..+..+++|+.|++.+|. ... +. .+..+++|+.|+
T Consensus 117 L~~L~l~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 117 LRVLYMSNN-KITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp SSEEEESEE-ECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred CCEEECCCC-cCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 999999944 444433 367889999999999887 222 21 256667777665
No 142
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.03 E-value=1.5e-09 Score=100.77 Aligned_cols=106 Identities=24% Similarity=0.261 Sum_probs=49.7
Q ss_pred CCceEEEEecccCCCCChhhhcCCCCCcEEEeecCCCCCceeeecCCCCCCcccEEEccCCCCcccccc-ccccccccce
Q 037018 541 PCLTQLSLSNTQLMEDPMPALEKLPHLEVLKLKQNSYSERKLACVGSGSFPQLKILHLKSMLWLEEWTM-GAGAMPKLES 619 (663)
Q Consensus 541 ~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~-~~~~l~~L~~ 619 (663)
++|+.|++++|.+.......+..+++|+.|++++|.+.+..... +..+++|+.|++++| .+..++. .+..+++|+.
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~--~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~ 104 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGV--FDKLTKLTILYLHEN-KLQSLPNGVFDKLTQLKE 104 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTT--TTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCE
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhH--ccCCCccCEEECCCC-CccccCHHHhhCCcccCE
Confidence 44555555555544433334455555555555555444322211 344555555555553 3333332 2345555555
Q ss_pred EEeecCCCCCCCccc-cCCCCCCCEEEecCCC
Q 037018 620 LIVNPCAYLRKLPEE-LWCIKSLCKLELHWPQ 650 (663)
Q Consensus 620 L~l~~c~~l~~l~~~-l~~l~sL~~L~l~~c~ 650 (663)
|++++|... .+|.. +..+++|+.|++++++
T Consensus 105 L~l~~N~l~-~~~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 105 LALDTNQLK-SVPDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp EECCSSCCS-CCCTTTTTTCTTCCEEECCSSC
T ss_pred EECcCCcce-EeCHHHhcCCcccCEEEecCCC
Confidence 555555432 33332 3445555555555544
No 143
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.94 E-value=5e-09 Score=96.87 Aligned_cols=99 Identities=24% Similarity=0.300 Sum_probs=76.4
Q ss_pred cEEEecCCcCcccCccCCCCCCcCeEeccCCCCccc-hhhhcccccccEeeccCCcccccchh-hhcCcCCcEEEccCCC
Q 037018 375 RVLNLGSAILYQYPPGLENLFHLKYLKLNIPSLNCL-PSLLCTLLNLQTLEMPASYIDHSPEG-IWMMQKLMHLNFGSIN 452 (663)
Q Consensus 375 r~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~l~~lp~~-l~~l~~L~~L~l~~~~ 452 (663)
+.++++++.++.+|..+. ++|++|++++|.++.+ |..++.+++|++|++++|.+..+|.. +..+++|++|++++|.
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence 678888888888887664 7888999998888877 56788888899999988888888766 5788888888888444
Q ss_pred CCCCCCC-CcCCCCCCcEeeCcCCC
Q 037018 453 LPAPPKN-YSSSLKNLIFISSLNPS 476 (663)
Q Consensus 453 ~~~~~~~-~l~~l~~L~~L~l~~~~ 476 (663)
+. .+|. .+..+++|+.|++.++.
T Consensus 93 l~-~l~~~~~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 93 LK-SIPRGAFDNLKSLTHIYLYNNP 116 (174)
T ss_dssp CC-CCCTTTTTTCTTCSEEECCSSC
T ss_pred cc-eeCHHHhccccCCCEEEeCCCC
Confidence 33 4444 36777777777777766
No 144
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.94 E-value=4.1e-09 Score=97.08 Aligned_cols=101 Identities=22% Similarity=0.287 Sum_probs=74.7
Q ss_pred ccEEEecCCcCcccCccCCCCCCcCeEeccCCCCccc-hhhhcccccccEeeccCCcccccchh-hhcCcCCcEEEccCC
Q 037018 374 LRVLNLGSAILYQYPPGLENLFHLKYLKLNIPSLNCL-PSLLCTLLNLQTLEMPASYIDHSPEG-IWMMQKLMHLNFGSI 451 (663)
Q Consensus 374 Lr~L~L~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~l~~lp~~-l~~l~~L~~L~l~~~ 451 (663)
.++++++++.++.+|..+. ++|++|++++|.++.+ |..++.+++|++|++++|.+..+|.. +..+++|++|++++|
T Consensus 11 ~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 5678888888888887663 7888888888888877 56678888888888888888777765 577888888888844
Q ss_pred CCCCCCCCCcCCCCCCcEeeCcCCC
Q 037018 452 NLPAPPKNYSSSLKNLIFISSLNPS 476 (663)
Q Consensus 452 ~~~~~~~~~l~~l~~L~~L~l~~~~ 476 (663)
.+....+..+..+++|+.|++.++.
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCC
Confidence 4443333346666777777766665
No 145
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.78 E-value=1.6e-07 Score=98.98 Aligned_cols=278 Identities=15% Similarity=0.087 Sum_probs=131.8
Q ss_pred CCcccEEEeecCccccccccch-hHHhcCCCcccEEEecCCcCcccC-ccCCCCCCcCeEeccCCCCccc----------
Q 037018 343 DMYLQSFLNHTLESDRLALIDC-ENFCKKFKHLRVLNLGSAILYQYP-PGLENLFHLKYLKLNIPSLNCL---------- 410 (663)
Q Consensus 343 ~~~lr~L~l~~~~~~~~~~~~l-~~~~~~l~~Lr~L~L~~~~l~~lp-~~~~~l~~L~~L~L~~~~i~~l---------- 410 (663)
+.+|+.+.+-.. . ..+ ...|..|++|+.+++.++ ++.++ ..+..+..|+.+.+..+ +..+
T Consensus 70 c~~L~~i~lp~~-i-----~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~~ 141 (394)
T 4fs7_A 70 CRKVTEIKIPST-V-----REIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCDF 141 (394)
T ss_dssp CTTEEEEECCTT-C-----CEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCCC
T ss_pred CCCceEEEeCCC-c-----cCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeecccc
Confidence 566776666432 1 123 223377777777777543 44333 23555666665554332 1111
Q ss_pred -------------hhhhcccccccEeeccCCcccccch-hhhcCcCCcEEEccCCCCCCCCCCCcCCCCCCcEeeCcCCC
Q 037018 411 -------------PSLLCTLLNLQTLEMPASYIDHSPE-GIWMMQKLMHLNFGSINLPAPPKNYSSSLKNLIFISSLNPS 476 (663)
Q Consensus 411 -------------p~~i~~L~~L~~L~L~~~~l~~lp~-~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 476 (663)
...+.++.+|+.+.+..+ +..++. .+..+.+|+.+.+. .+........+..+..|+.+.+....
T Consensus 142 ~~~~~~~~~~~i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~-~~~~~I~~~~F~~~~~L~~i~~~~~~ 219 (394)
T 4fs7_A 142 KEITIPEGVTVIGDEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLP-RNLKIIRDYCFAECILLENMEFPNSL 219 (394)
T ss_dssp SEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCC-TTCCEECTTTTTTCTTCCBCCCCTTC
T ss_pred cccccCccccccchhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcC-CCceEeCchhhccccccceeecCCCc
Confidence 112334444555444433 112221 23444455554444 22222222233444444444433322
Q ss_pred CCChhhcCCCCCccEEEeecCCCccccchhhhhcCCCCCCEEEEeecCccccccccccccccCCCCceEEEEecccCCCC
Q 037018 477 SCTPDILGRLPNVQTLRISGDLSHYHSGVSKSLCELHKLECLQLVHEGRMWQLSRMVLSEYQFPPCLTQLSLSNTQLMED 556 (663)
Q Consensus 477 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~lp~~~~~l~~~l~~L~~L~L~~~~l~~~ 556 (663)
..+........+|+.+.+... ....-...+..+..|+.+.+.. + ...++.. .+.. ++.++.+......+
T Consensus 220 ~~i~~~~~~~~~l~~i~ip~~---~~~i~~~~f~~~~~l~~~~~~~-~-~~~i~~~--~F~~-~~~l~~~~~~~~~i--- 288 (394)
T 4fs7_A 220 YYLGDFALSKTGVKNIIIPDS---FTELGKSVFYGCTDLESISIQN-N-KLRIGGS--LFYN-CSGLKKVIYGSVIV--- 288 (394)
T ss_dssp CEECTTTTTTCCCCEEEECTT---CCEECSSTTTTCSSCCEEEECC-T-TCEECSC--TTTT-CTTCCEEEECSSEE---
T ss_pred eEeehhhcccCCCceEEECCC---ceecccccccccccceeEEcCC-C-cceeecc--cccc-ccccceeccCceee---
Confidence 111112223345555555432 1111223344556666666653 2 2222220 2333 55666665544332
Q ss_pred ChhhhcCCCCCcEEEeecCCCCCceeeecCCCCCCcccEEEccCCCCccccc-cccccccccceEEeecCCCCCCCc-cc
Q 037018 557 PMPALEKLPHLEVLKLKQNSYSERKLACVGSGSFPQLKILHLKSMLWLEEWT-MGAGAMPKLESLIVNPCAYLRKLP-EE 634 (663)
Q Consensus 557 ~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~-~~~~~l~~L~~L~l~~c~~l~~l~-~~ 634 (663)
....+..+.+|+.+.+..+ +.... .. ++.++.+|+.+.|.. .++.+. ..+.+|.+|+.+.+..+ ++.++ ..
T Consensus 289 ~~~~F~~~~~L~~i~l~~~-i~~I~-~~-aF~~c~~L~~i~lp~--~v~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~a 361 (394)
T 4fs7_A 289 PEKTFYGCSSLTEVKLLDS-VKFIG-EE-AFESCTSLVSIDLPY--LVEEIGKRSFRGCTSLSNINFPLS--LRKIGANA 361 (394)
T ss_dssp CTTTTTTCTTCCEEEECTT-CCEEC-TT-TTTTCTTCCEECCCT--TCCEECTTTTTTCTTCCEECCCTT--CCEECTTT
T ss_pred ccccccccccccccccccc-cceec-hh-hhcCCCCCCEEEeCC--cccEEhHHhccCCCCCCEEEECcc--ccEehHHH
Confidence 2234566777777777532 22111 11 155677777777764 355553 34667777888777644 44443 35
Q ss_pred cCCCCCCCEEEecC
Q 037018 635 LWCIKSLCKLELHW 648 (663)
Q Consensus 635 l~~l~sL~~L~l~~ 648 (663)
+.+|++|+.+++..
T Consensus 362 F~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 362 FQGCINLKKVELPK 375 (394)
T ss_dssp BTTCTTCCEEEEEG
T ss_pred hhCCCCCCEEEECC
Confidence 67778888887754
No 146
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.73 E-value=3.9e-08 Score=90.41 Aligned_cols=101 Identities=16% Similarity=0.161 Sum_probs=77.4
Q ss_pred CcCeEeccCCCCccchhhhcccccccEeeccCCccccc-chhhhcCcCCcEEEccCCCCCCCCCCCcCCCCCCcEeeCcC
Q 037018 396 HLKYLKLNIPSLNCLPSLLCTLLNLQTLEMPASYIDHS-PEGIWMMQKLMHLNFGSINLPAPPKNYSSSLKNLIFISSLN 474 (663)
Q Consensus 396 ~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~l-p~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 474 (663)
..+.++++++.++.+|..+. .+|++|++++|.+..+ |..+..+++|++|++++|.+....+..+..+++|+.|++++
T Consensus 10 ~~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 10 SGTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp ETTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 56889999999999987663 7899999999988887 45588899999999995544444444467888888888888
Q ss_pred CC-CCChh-hcCCCCCccEEEeecCC
Q 037018 475 PS-SCTPD-ILGRLPNVQTLRISGDL 498 (663)
Q Consensus 475 ~~-~~~~~-~l~~l~~L~~L~l~~~~ 498 (663)
+. ..++. .+..+++|+.|++++|.
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCC
Confidence 77 44443 47778888888888773
No 147
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.71 E-value=4.7e-08 Score=90.26 Aligned_cols=99 Identities=14% Similarity=0.117 Sum_probs=73.9
Q ss_pred cCeEeccCCCCccchhhhcccccccEeeccCCccccc-chhhhcCcCCcEEEccCCCCCCCCCC-CcCCCCCCcEeeCcC
Q 037018 397 LKYLKLNIPSLNCLPSLLCTLLNLQTLEMPASYIDHS-PEGIWMMQKLMHLNFGSINLPAPPKN-YSSSLKNLIFISSLN 474 (663)
Q Consensus 397 L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~l-p~~l~~l~~L~~L~l~~~~~~~~~~~-~l~~l~~L~~L~l~~ 474 (663)
-+.++++++.++.+|..+. .+|+.|++++|.+..+ |..+..+++|++|++++| ....+|. .+..+++|+.|++++
T Consensus 14 ~~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 14 QTLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SSEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCC-CCCccChhHhCCcchhhEEECCC
Confidence 4788999999998887664 7899999999988777 456888999999999844 4444444 357778888888877
Q ss_pred CC-CCChh-hcCCCCCccEEEeecCC
Q 037018 475 PS-SCTPD-ILGRLPNVQTLRISGDL 498 (663)
Q Consensus 475 ~~-~~~~~-~l~~l~~L~~L~l~~~~ 498 (663)
+. ..++. .++.+++|+.|++++|.
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNP 116 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSC
T ss_pred CccceeCHHHhccccCCCEEEeCCCC
Confidence 77 44443 36777777777777763
No 148
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.69 E-value=7.9e-09 Score=106.97 Aligned_cols=138 Identities=20% Similarity=0.242 Sum_probs=63.4
Q ss_pred hhhhhcCCCCCCEEEEeecCccccccccccccccCCCCceEEEEecccCCCCChhhhc--CCCCCcEEEeecC--CCCCc
Q 037018 505 VSKSLCELHKLECLQLVHEGRMWQLSRMVLSEYQFPPCLTQLSLSNTQLMEDPMPALE--KLPHLEVLKLKQN--SYSER 580 (663)
Q Consensus 505 ~~~~l~~l~~L~~L~l~~~~~l~~lp~~~~~l~~~l~~L~~L~L~~~~l~~~~~~~l~--~l~~L~~L~L~~~--~~~~~ 580 (663)
+...+..+++|+.|.++++..+ .++. + . .++|++|+|..|.+.......+. .+|+|+.|+|+.+ ...+.
T Consensus 164 L~~ll~~~P~L~~L~L~g~~~l-~l~~----~-~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~ 236 (362)
T 2ra8_A 164 LSPVLDAMPLLNNLKIKGTNNL-SIGK----K-P-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFD 236 (362)
T ss_dssp CHHHHHTCTTCCEEEEECCBTC-BCCS----C-B-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCC
T ss_pred HHHHHhcCCCCcEEEEeCCCCc-eecc----c-c-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccc
Confidence 3344455566666666543111 2331 1 2 45666666666555433333332 5666666666421 11111
Q ss_pred e------eeecCCCCCCcccEEEccCCCCcccccc---ccccccccceEEeecCCCCC----CCccccCCCCCCCEEEec
Q 037018 581 K------LACVGSGSFPQLKILHLKSMLWLEEWTM---GAGAMPKLESLIVNPCAYLR----KLPEELWCIKSLCKLELH 647 (663)
Q Consensus 581 ~------~~~~~~~~~~~L~~L~L~~~~~l~~l~~---~~~~l~~L~~L~l~~c~~l~----~l~~~l~~l~sL~~L~l~ 647 (663)
. .... ...||+|++|.|.+|......+. ....+|+|+.|+++.|.... .++.++.++++|+.|+++
T Consensus 237 ~~~~~l~~~l~-~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~ 315 (362)
T 2ra8_A 237 GDMNVFRPLFS-KDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMK 315 (362)
T ss_dssp SCGGGTGGGSC-TTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECC
T ss_pred hhHHHHHHHHh-cCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECC
Confidence 0 0111 13466666666665543321111 11245666666666554322 123333445666666666
Q ss_pred CCC
Q 037018 648 WPQ 650 (663)
Q Consensus 648 ~c~ 650 (663)
+|.
T Consensus 316 ~n~ 318 (362)
T 2ra8_A 316 YNY 318 (362)
T ss_dssp SBB
T ss_pred CCc
Confidence 654
No 149
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.67 E-value=2.4e-09 Score=111.69 Aligned_cols=62 Identities=23% Similarity=0.244 Sum_probs=35.3
Q ss_pred CCcccEEEecCCcCcc-----cCccCC-CCCCcCeEeccCCCCcc--chhhhcccccccEeeccCCcccc
Q 037018 371 FKHLRVLNLGSAILYQ-----YPPGLE-NLFHLKYLKLNIPSLNC--LPSLLCTLLNLQTLEMPASYIDH 432 (663)
Q Consensus 371 l~~Lr~L~L~~~~l~~-----lp~~~~-~l~~L~~L~L~~~~i~~--lp~~i~~L~~L~~L~L~~~~l~~ 432 (663)
+++|+.|++++|.++. +...+. ...+|++|+|++|.++. +......+.+|+.|++++|.++.
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~ 140 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGP 140 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCH
Confidence 4567778888777652 222222 23577777777777652 22222345566777777775543
No 150
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.65 E-value=3.4e-09 Score=110.59 Aligned_cols=110 Identities=17% Similarity=0.094 Sum_probs=74.6
Q ss_pred CCcccEEEeecCccccccccchhHHhc-CCCcccEEEecCCcCcc--cCccCCCCCCcCeEeccCCCCccc-----hhhh
Q 037018 343 DMYLQSFLNHTLESDRLALIDCENFCK-KFKHLRVLNLGSAILYQ--YPPGLENLFHLKYLKLNIPSLNCL-----PSLL 414 (663)
Q Consensus 343 ~~~lr~L~l~~~~~~~~~~~~l~~~~~-~l~~Lr~L~L~~~~l~~--lp~~~~~l~~L~~L~L~~~~i~~l-----p~~i 414 (663)
.++++.|.+.++.........+...+. ..++|++|+|++|.++. .......+++|++|+|++|.++.. ...+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 567888888888765322333323323 34799999999999862 222233456899999999988732 2223
Q ss_pred -cccccccEeeccCCcccc-----cchhhhcCcCCcEEEccCCC
Q 037018 415 -CTLLNLQTLEMPASYIDH-----SPEGIWMMQKLMHLNFGSIN 452 (663)
Q Consensus 415 -~~L~~L~~L~L~~~~l~~-----lp~~l~~l~~L~~L~l~~~~ 452 (663)
...++|++|++++|.++. ++..+..+++|++|++++|.
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~ 194 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTG 194 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSS
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCC
Confidence 246789999999997654 45556778888888888443
No 151
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.55 E-value=4.7e-06 Score=87.66 Aligned_cols=283 Identities=10% Similarity=0.057 Sum_probs=158.9
Q ss_pred cccEEEeecCccccccccch-hHHhcCCCcccEEEecCCc---CcccC-ccCCCCCCcCeEeccCCCCccch-hhhcccc
Q 037018 345 YLQSFLNHTLESDRLALIDC-ENFCKKFKHLRVLNLGSAI---LYQYP-PGLENLFHLKYLKLNIPSLNCLP-SLLCTLL 418 (663)
Q Consensus 345 ~lr~L~l~~~~~~~~~~~~l-~~~~~~l~~Lr~L~L~~~~---l~~lp-~~~~~l~~L~~L~L~~~~i~~lp-~~i~~L~ 418 (663)
.|+++.+-..-. .+ ..-|..|.+|+.+.+..+. ++.+. ..|..+.+|+.+.+..+ ++.++ ..+..+.
T Consensus 65 ~L~sI~iP~svt------~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~ 137 (394)
T 4gt6_A 65 VLTSVQIPDTVT------EIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCE 137 (394)
T ss_dssp CCCEEEECTTCC------EECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCT
T ss_pred cCEEEEECCCee------EEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhc
Confidence 477777644311 33 3334888899998887653 55554 34777888888777653 44454 4566788
Q ss_pred cccEeeccCCcccccc-hhhhcCcCCcEEEccCCCCCCCCCCCcCCCCCCcEeeCcCCC-CCChhhcCCCCCccEEEeec
Q 037018 419 NLQTLEMPASYIDHSP-EGIWMMQKLMHLNFGSINLPAPPKNYSSSLKNLIFISSLNPS-SCTPDILGRLPNVQTLRISG 496 (663)
Q Consensus 419 ~L~~L~L~~~~l~~lp-~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~ 496 (663)
+|+.+.+... +..++ ..+..+.+|+.+.+. +.....-...+. ..+|+.+.+.... ......+..+.++.......
T Consensus 138 ~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~-~~~~~I~~~aF~-~~~l~~i~ip~~~~~i~~~af~~c~~l~~~~~~~ 214 (394)
T 4gt6_A 138 ELDTVTIPEG-VTSVADGMFSYCYSLHTVTLP-DSVTAIEERAFT-GTALTQIHIPAKVTRIGTNAFSECFALSTITSDS 214 (394)
T ss_dssp TCCEEECCTT-CCEECTTTTTTCTTCCEEECC-TTCCEECTTTTT-TCCCSEEEECTTCCEECTTTTTTCTTCCEEEECC
T ss_pred ccccccccce-eeeecccceeccccccccccc-ceeeEecccccc-ccceeEEEECCcccccccchhhhccccceecccc
Confidence 8888888654 33333 346778888888887 443222222232 3567777765544 22334566677777666554
Q ss_pred CCCccccc-h----------hhhhcCCCCCCEEEEeecCccccccccccccccCCCCceEEEEecccCCCCChhhhcCCC
Q 037018 497 DLSHYHSG-V----------SKSLCELHKLECLQLVHEGRMWQLSRMVLSEYQFPPCLTQLSLSNTQLMEDPMPALEKLP 565 (663)
Q Consensus 497 ~~~~~~~~-~----------~~~l~~l~~L~~L~l~~~~~l~~lp~~~~~l~~~l~~L~~L~L~~~~l~~~~~~~l~~l~ 565 (663)
........ . .........+..+.+. +.+..+... .+.. +.+|+.+.+.... .......+.+++
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip--~~v~~i~~~--aF~~-c~~L~~i~lp~~~-~~I~~~aF~~c~ 288 (394)
T 4gt6_A 215 ESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIP--NGVARIETH--AFDS-CAYLASVKMPDSV-VSIGTGAFMNCP 288 (394)
T ss_dssp SSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECC--TTEEEECTT--TTTT-CSSCCEEECCTTC-CEECTTTTTTCT
T ss_pred cccccccceeecccccccccccccccccccceEEcC--CcceEcccc--eeee-cccccEEeccccc-ceecCccccccc
Confidence 32000000 0 0000111233333332 223333220 2334 6777777775543 223344667778
Q ss_pred CCcEEEeecCCCCCceeeecCCCCCCcccEEEccCCCCccccc-cccccccccceEEeecCCCCCCCc-cccCCCCCCCE
Q 037018 566 HLEVLKLKQNSYSERKLACVGSGSFPQLKILHLKSMLWLEEWT-MGAGAMPKLESLIVNPCAYLRKLP-EELWCIKSLCK 643 (663)
Q Consensus 566 ~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~-~~~~~l~~L~~L~l~~c~~l~~l~-~~l~~l~sL~~ 643 (663)
+|+.+.+. +.+.... ... +.++.+|+.+.|.. .++.+. ..+.+|.+|+.+.|-.+ ++.++ ..+.+|++|+.
T Consensus 289 ~L~~i~l~-~~i~~I~-~~a-F~~c~~L~~i~lp~--~v~~I~~~aF~~C~~L~~i~ip~s--v~~I~~~aF~~C~~L~~ 361 (394)
T 4gt6_A 289 ALQDIEFS-SRITELP-ESV-FAGCISLKSIDIPE--GITQILDDAFAGCEQLERIAIPSS--VTKIPESAFSNCTALNN 361 (394)
T ss_dssp TCCEEECC-TTCCEEC-TTT-TTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEEECTT--CCBCCGGGGTTCTTCCE
T ss_pred ccccccCC-CcccccC-cee-ecCCCCcCEEEeCC--cccEehHhHhhCCCCCCEEEECcc--cCEEhHhHhhCCCCCCE
Confidence 88888775 3332211 111 56777888888764 355543 35677788888887543 44444 35777888888
Q ss_pred EEecCCC
Q 037018 644 LELHWPQ 650 (663)
Q Consensus 644 L~l~~c~ 650 (663)
+++.+..
T Consensus 362 i~~~~~~ 368 (394)
T 4gt6_A 362 IEYSGSR 368 (394)
T ss_dssp EEESSCH
T ss_pred EEECCce
Confidence 8887654
No 152
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.53 E-value=2.5e-07 Score=95.65 Aligned_cols=81 Identities=15% Similarity=0.099 Sum_probs=40.4
Q ss_pred cCCCcccEEEecC-CcCcccC-ccCCCCCCcCeEeccCCCCccch-hhhcccccccEeeccCCcccccchhhhcCcCCcE
Q 037018 369 KKFKHLRVLNLGS-AILYQYP-PGLENLFHLKYLKLNIPSLNCLP-SLLCTLLNLQTLEMPASYIDHSPEGIWMMQKLMH 445 (663)
Q Consensus 369 ~~l~~Lr~L~L~~-~~l~~lp-~~~~~l~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~l~~lp~~l~~l~~L~~ 445 (663)
..+++|+.|+|++ |.++.+| ..|+.+++|++|+|++|.|+.+| ..|++|++|+.|+|++|.+..+|..+....+|+.
T Consensus 28 ~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~L~~ 107 (347)
T 2ifg_A 28 PGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQE 107 (347)
T ss_dssp CSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCCCCE
T ss_pred CCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCCceE
Confidence 5555555555553 5555443 33555555555555555555443 2345555555555555555555444333223555
Q ss_pred EEcc
Q 037018 446 LNFG 449 (663)
Q Consensus 446 L~l~ 449 (663)
|++.
T Consensus 108 l~l~ 111 (347)
T 2ifg_A 108 LVLS 111 (347)
T ss_dssp EECC
T ss_pred EEee
Confidence 5555
No 153
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.51 E-value=1.2e-06 Score=92.24 Aligned_cols=234 Identities=12% Similarity=0.045 Sum_probs=146.4
Q ss_pred ccCCCCCCcCeEeccCCCCccch-hhhcccccccEeeccCCcccccc-hhhhcCcCCcEEEccCCCCCCCCCCCcCCCCC
Q 037018 389 PGLENLFHLKYLKLNIPSLNCLP-SLLCTLLNLQTLEMPASYIDHSP-EGIWMMQKLMHLNFGSINLPAPPKNYSSSLKN 466 (663)
Q Consensus 389 ~~~~~l~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~l~~lp-~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~ 466 (663)
..|.++.+|+.+.+..+ +..++ ..+..+.+|+.+.+..+ +..++ ..+..+..|+.+.+. +... .+........+
T Consensus 156 ~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~-~~~~-~i~~~~~~~~~ 231 (394)
T 4fs7_A 156 EAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFP-NSLY-YLGDFALSKTG 231 (394)
T ss_dssp TTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCC-TTCC-EECTTTTTTCC
T ss_pred hhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecC-CCce-EeehhhcccCC
Confidence 35777888888888654 33343 45667788888888665 33333 246677778877776 3221 11222333456
Q ss_pred CcEeeCcCCC-CCChhhcCCCCCccEEEeecCCCccccchhhhhcCCCCCCEEEEeecCccccccccccccccCCCCceE
Q 037018 467 LIFISSLNPS-SCTPDILGRLPNVQTLRISGDLSHYHSGVSKSLCELHKLECLQLVHEGRMWQLSRMVLSEYQFPPCLTQ 545 (663)
Q Consensus 467 L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~lp~~~~~l~~~l~~L~~ 545 (663)
|+.+.+.... ......+..+.+|+.+.+..+ ........+..+..|+.+.... .. ++.. .+.. +.+|+.
T Consensus 232 l~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~---~~~i~~~~F~~~~~l~~~~~~~-~~---i~~~--~F~~-~~~L~~ 301 (394)
T 4fs7_A 232 VKNIIIPDSFTELGKSVFYGCTDLESISIQNN---KLRIGGSLFYNCSGLKKVIYGS-VI---VPEK--TFYG-CSSLTE 301 (394)
T ss_dssp CCEEEECTTCCEECSSTTTTCSSCCEEEECCT---TCEECSCTTTTCTTCCEEEECS-SE---ECTT--TTTT-CTTCCE
T ss_pred CceEEECCCceecccccccccccceeEEcCCC---cceeeccccccccccceeccCc-ee---eccc--cccc-cccccc
Confidence 7777665433 222235667788888888765 3333344566777888877753 32 3320 3344 788888
Q ss_pred EEEecccCCCCChhhhcCCCCCcEEEeecCCCCCceeeecCCCCCCcccEEEccCCCCccccc-cccccccccceEEeec
Q 037018 546 LSLSNTQLMEDPMPALEKLPHLEVLKLKQNSYSERKLACVGSGSFPQLKILHLKSMLWLEEWT-MGAGAMPKLESLIVNP 624 (663)
Q Consensus 546 L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~-~~~~~l~~L~~L~l~~ 624 (663)
+.+..+ +......+|.+|.+|+.+.|.. .+.... .. ++.++.+|+.+.|.. .+..+. ..+.+|++|+.+++..
T Consensus 302 i~l~~~-i~~I~~~aF~~c~~L~~i~lp~-~v~~I~-~~-aF~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 302 VKLLDS-VKFIGEEAFESCTSLVSIDLPY-LVEEIG-KR-SFRGCTSLSNINFPL--SLRKIGANAFQGCINLKKVELPK 375 (394)
T ss_dssp EEECTT-CCEECTTTTTTCTTCCEECCCT-TCCEEC-TT-TTTTCTTCCEECCCT--TCCEECTTTBTTCTTCCEEEEEG
T ss_pred cccccc-cceechhhhcCCCCCCEEEeCC-cccEEh-HH-hccCCCCCCEEEECc--cccEehHHHhhCCCCCCEEEECC
Confidence 888654 3334455788889999998863 332211 11 267788999998875 366554 4578899999999975
Q ss_pred CCCCCCCccccCCCCCCCEE
Q 037018 625 CAYLRKLPEELWCIKSLCKL 644 (663)
Q Consensus 625 c~~l~~l~~~l~~l~sL~~L 644 (663)
+ ++.+...+.+|++|+.+
T Consensus 376 ~--~~~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 376 R--LEQYRYDFEDTTKFKWI 393 (394)
T ss_dssp G--GGGGGGGBCTTCEEEEE
T ss_pred C--CEEhhheecCCCCCcEE
Confidence 4 34445678888888876
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.49 E-value=1.3e-07 Score=97.78 Aligned_cols=64 Identities=14% Similarity=0.182 Sum_probs=31.5
Q ss_pred CCCCCcEEEeecCCCCCceeeec-CCCCCCcccEEEccCCCCccc-----cccccccccccceEEeecCCC
Q 037018 563 KLPHLEVLKLKQNSYSERKLACV-GSGSFPQLKILHLKSMLWLEE-----WTMGAGAMPKLESLIVNPCAY 627 (663)
Q Consensus 563 ~l~~L~~L~L~~~~~~~~~~~~~-~~~~~~~L~~L~L~~~~~l~~-----l~~~~~~l~~L~~L~l~~c~~ 627 (663)
.+|+|+.|.|.+|.+.+...... ....+++|++|+|+.| .+.. ++..+.++++|+.|++++|..
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n-~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i 319 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAG-VLTDEGARLLLDHVDKIKHLKFINMKYNYL 319 (362)
T ss_dssp TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSS-CCBHHHHHHHHTTHHHHTTCSEEECCSBBC
T ss_pred CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCC-CCChHHHHHHHhhcccCCcceEEECCCCcC
Confidence 35566666665555443211110 0234566666666553 3332 233334566666666666653
No 155
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=98.44 E-value=3.2e-07 Score=97.24 Aligned_cols=110 Identities=20% Similarity=0.124 Sum_probs=73.8
Q ss_pred ccccchhhcHHHHHHHH-hc---C--CCCceEEEEEec----chhhHHHHHhcCCCccccCCCCccccCC-----ce-ee
Q 037018 19 CSSKTVKVKVKAVLVWL-FM---L--DSMWLQFLTAVA----YKTAFVADIYNNNVDLSAMNPKLRVPKR-----FI-NK 82 (663)
Q Consensus 19 ~~~~G~~~~~~~i~~~L-~~---~--~~~~~~vi~i~G----GKTtla~~v~~~~~~~~~~~~~~~~~~~-----F~-~~ 82 (663)
..++||+.+++++.++| .. . .....-+|||+| ||||||+++++ +.... |+ ..
T Consensus 22 ~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~------------~~~~~~~~~~~~~~~ 89 (412)
T 1w5s_A 22 PELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVK------------RVSEAAAKEGLTVKQ 89 (412)
T ss_dssp SSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHH------------HHHHHHHHTTCCEEE
T ss_pred CCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHH------------HHHHHHhccCCceeE
Confidence 57999999999999998 42 2 222445555588 99999999998 44332 22 24
Q ss_pred ccCCCcceEeCCCcchhHHHHHHHHHHHhCCCCCcchhhhhHhhHHHHHHHHhhc--CCcEEEEEeCCCC
Q 037018 83 AFPVAFPVDVNCACNAQLNHILDDIIKSVMPPSRVNVIISEDYKLKTIILRDYLT--NKKDFIVLDDVFD 150 (663)
Q Consensus 83 ~~~~~~~v~vs~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~~l~~~L~--~kr~LlVLDdv~~ 150 (663)
+| +......+ ...+.+.++.+++......+.. ...+ ...+.+.+. +++++|||||++.
T Consensus 90 ~~-----~~~~~~~~--~~~~~~~l~~~l~~~~~~~~~~--~~~~-~~~l~~~l~~~~~~~llvlDe~~~ 149 (412)
T 1w5s_A 90 AY-----VNAFNAPN--LYTILSLIVRQTGYPIQVRGAP--ALDI-LKALVDNLYVENHYLLVILDEFQS 149 (412)
T ss_dssp EE-----EEGGGCCS--HHHHHHHHHHHHTCCCCCTTCC--HHHH-HHHHHHHHHHHTCEEEEEEESTHH
T ss_pred EE-----EECCCCCC--HHHHHHHHHHHhCCCCCCCCCC--HHHH-HHHHHHHHHhcCCeEEEEEeCHHH
Confidence 55 55555566 8899999999987643211111 2333 444555554 6899999999987
No 156
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.42 E-value=1.6e-07 Score=85.56 Aligned_cols=89 Identities=10% Similarity=0.088 Sum_probs=65.5
Q ss_pred CCCceEEEEecccCCCCChhhhcCCCCCcEEEeecCC-CCCceeeecCCCC----CCcccEEEccCCCCcccc-cccccc
Q 037018 540 PPCLTQLSLSNTQLMEDPMPALEKLPHLEVLKLKQNS-YSERKLACVGSGS----FPQLKILHLKSMLWLEEW-TMGAGA 613 (663)
Q Consensus 540 l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~-~~~~~~~~~~~~~----~~~L~~L~L~~~~~l~~l-~~~~~~ 613 (663)
-..|+.|++++|.+++..+..+.++++|+.|+|++|. +++..+.. +.. +++|++|+|++|+.++.- -..+..
T Consensus 60 ~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~--L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~ 137 (176)
T 3e4g_A 60 KYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLER--LSQLENLQKSMLEMEIISCGNVTDKGIIALHH 137 (176)
T ss_dssp CCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHH--HHTCHHHHHHCCEEEEESCTTCCHHHHHHGGG
T ss_pred CceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHH--HHhcccccCCCCEEEcCCCCcCCHHHHHHHhc
Confidence 3578999999998888778888889999999999885 55544433 222 357888888888877732 223557
Q ss_pred ccccceEEeecCCCCCC
Q 037018 614 MPKLESLIVNPCAYLRK 630 (663)
Q Consensus 614 l~~L~~L~l~~c~~l~~ 630 (663)
+++|++|++++|+.++.
T Consensus 138 ~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 138 FRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp CTTCCEEEEESCTTCCC
T ss_pred CCCCCEEECCCCCCCCc
Confidence 88888888888887764
No 157
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.42 E-value=5.8e-06 Score=86.94 Aligned_cols=303 Identities=11% Similarity=0.059 Sum_probs=179.1
Q ss_pred ceeEEEEEecccccccccccC-CCcccEEEeecCccccccccch-hHHhcCCCcccEEEecCCcCcccC-ccCCCCCCcC
Q 037018 322 NVKRCFILEDLIDEFISLEHS-DMYLQSFLNHTLESDRLALIDC-ENFCKKFKHLRVLNLGSAILYQYP-PGLENLFHLK 398 (663)
Q Consensus 322 ~~r~lsi~~~~~~~~~~~~~~-~~~lr~L~l~~~~~~~~~~~~l-~~~~~~l~~Lr~L~L~~~~l~~lp-~~~~~l~~L~ 398 (663)
.++.+.+.... ..+...... +.+|+.+.+..+.... ...+ ...|..|.+|+.+.+..+ ++.++ ..+..+.+|+
T Consensus 65 ~L~sI~iP~sv-t~Ig~~AF~~C~~L~~i~~~~n~p~~--l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~ 140 (394)
T 4gt6_A 65 VLTSVQIPDTV-TEIGSNAFYNCTSLKRVTIQDNKPSC--VKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELD 140 (394)
T ss_dssp CCCEEEECTTC-CEECTTTTTTCTTCCEEEEGGGCCCC--CCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCC
T ss_pred cCEEEEECCCe-eEEhHHHhhCCccCceEeecCCCCCe--eeEechhhchhcccceeeccCCc-cceehhhhhhhhcccc
Confidence 35666665432 555433333 7899999887653221 1233 333488888888776654 44444 4577889999
Q ss_pred eEeccCCCCccch-hhhcccccccEeeccCCcccccchhhhcCcCCcEEEccCCCCCCCCCCCcCCCCCCcEeeCcCCC-
Q 037018 399 YLKLNIPSLNCLP-SLLCTLLNLQTLEMPASYIDHSPEGIWMMQKLMHLNFGSINLPAPPKNYSSSLKNLIFISSLNPS- 476 (663)
Q Consensus 399 ~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~- 476 (663)
.+.+..+ +..++ ..+..+.+|+.+.+..+ +..+........+|+.+.+. ..........+..+.++.........
T Consensus 141 ~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~~~l~~i~ip-~~~~~i~~~af~~c~~l~~~~~~~~~~ 217 (394)
T 4gt6_A 141 TVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTGTALTQIHIP-AKVTRIGTNAFSECFALSTITSDSESY 217 (394)
T ss_dssp EEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCCCSEEEEC-TTCCEECTTTTTTCTTCCEEEECCSSS
T ss_pred cccccce-eeeecccceecccccccccccce-eeEeccccccccceeEEEEC-Ccccccccchhhhccccceeccccccc
Confidence 9999754 44443 46678889999988765 44444443345678888887 44443444456666777666544332
Q ss_pred CCChh--------------hcCCCCCccEEEeecCCCccccchhhhhcCCCCCCEEEEeecCccccccccccccccCCCC
Q 037018 477 SCTPD--------------ILGRLPNVQTLRISGDLSHYHSGVSKSLCELHKLECLQLVHEGRMWQLSRMVLSEYQFPPC 542 (663)
Q Consensus 477 ~~~~~--------------~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~lp~~~~~l~~~l~~ 542 (663)
..... .......+..+.+-.. ....-...+..+.+|+.+.+. +.+..++.. .+.. +++
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~---v~~i~~~aF~~c~~L~~i~lp--~~~~~I~~~--aF~~-c~~ 289 (394)
T 4gt6_A 218 PAIDNVLYEKSANGDYALIRYPSQREDPAFKIPNG---VARIETHAFDSCAYLASVKMP--DSVVSIGTG--AFMN-CPA 289 (394)
T ss_dssp CBSSSCEEEECTTSCEEEEECCTTCCCSEEECCTT---EEEECTTTTTTCSSCCEEECC--TTCCEECTT--TTTT-CTT
T ss_pred ccccceeecccccccccccccccccccceEEcCCc---ceEcccceeeecccccEEecc--cccceecCc--cccc-ccc
Confidence 00000 0111223333333321 222223456778889999886 334444441 3445 888
Q ss_pred ceEEEEecccCCCCChhhhcCCCCCcEEEeecCCCCCceeeecCCCCCCcccEEEccCCCCccccc-cccccccccceEE
Q 037018 543 LTQLSLSNTQLMEDPMPALEKLPHLEVLKLKQNSYSERKLACVGSGSFPQLKILHLKSMLWLEEWT-MGAGAMPKLESLI 621 (663)
Q Consensus 543 L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~-~~~~~l~~L~~L~ 621 (663)
|+.+.+.. .+.......|.+|.+|+.+.|..+ ++... .. ++.+|.+|+.+.|.. .++.+. ..+.+|++|+.++
T Consensus 290 L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~-~~-aF~~C~~L~~i~ip~--sv~~I~~~aF~~C~~L~~i~ 363 (394)
T 4gt6_A 290 LQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQIL-DD-AFAGCEQLERIAIPS--SVTKIPESAFSNCTALNNIE 363 (394)
T ss_dssp CCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEEC-TT-TTTTCTTCCEEEECT--TCCBCCGGGGTTCTTCCEEE
T ss_pred cccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEeh-Hh-HhhCCCCCCEEEECc--ccCEEhHhHhhCCCCCCEEE
Confidence 99998864 334445567889999999999743 32211 11 267888999999975 356554 4578899999999
Q ss_pred eecCCCCCCCccccCCCCCCCEEEecC
Q 037018 622 VNPCAYLRKLPEELWCIKSLCKLELHW 648 (663)
Q Consensus 622 l~~c~~l~~l~~~l~~l~sL~~L~l~~ 648 (663)
+.++... ...+..+.+|+.|.+..
T Consensus 364 ~~~~~~~---~~~~~~~~~L~~i~i~~ 387 (394)
T 4gt6_A 364 YSGSRSQ---WNAISTDSGLQNLPVAP 387 (394)
T ss_dssp ESSCHHH---HHTCBCCCCC-------
T ss_pred ECCceee---hhhhhccCCCCEEEeCC
Confidence 9876432 13456678888888753
No 158
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.33 E-value=9.5e-07 Score=91.26 Aligned_cols=98 Identities=18% Similarity=0.074 Sum_probs=81.7
Q ss_pred EEEecCC-cCcccCccCCCCCCcCeEeccC-CCCccch-hhhcccccccEeeccCCcccccch-hhhcCcCCcEEEccCC
Q 037018 376 VLNLGSA-ILYQYPPGLENLFHLKYLKLNI-PSLNCLP-SLLCTLLNLQTLEMPASYIDHSPE-GIWMMQKLMHLNFGSI 451 (663)
Q Consensus 376 ~L~L~~~-~l~~lp~~~~~l~~L~~L~L~~-~~i~~lp-~~i~~L~~L~~L~L~~~~l~~lp~-~l~~l~~L~~L~l~~~ 451 (663)
.++++++ .++.+|. +..+.+|++|+|++ |.+..+| ..++.|.+|+.|+|++|.+..++. .|..+++|++|+|++|
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 4688888 8999999 99999999999996 9999887 578999999999999998888765 5799999999999955
Q ss_pred CCCCCCCCC-cCCCCCCcEeeCcCCC
Q 037018 452 NLPAPPKNY-SSSLKNLIFISSLNPS 476 (663)
Q Consensus 452 ~~~~~~~~~-l~~l~~L~~L~l~~~~ 476 (663)
.+ ..+|.. +..++ |+.|++.++.
T Consensus 91 ~l-~~~~~~~~~~~~-L~~l~l~~N~ 114 (347)
T 2ifg_A 91 AL-ESLSWKTVQGLS-LQELVLSGNP 114 (347)
T ss_dssp CC-SCCCSTTTCSCC-CCEEECCSSC
T ss_pred cc-ceeCHHHcccCC-ceEEEeeCCC
Confidence 44 455554 44444 9999998887
No 159
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.29 E-value=3.3e-05 Score=80.66 Aligned_cols=257 Identities=9% Similarity=0.039 Sum_probs=121.3
Q ss_pred CCcccEEEeecCccccccccch-hHHhcCCCcccEEEecCCcCcccC-ccCCCCCCcCeEeccCCCCccchhhhcccccc
Q 037018 343 DMYLQSFLNHTLESDRLALIDC-ENFCKKFKHLRVLNLGSAILYQYP-PGLENLFHLKYLKLNIPSLNCLPSLLCTLLNL 420 (663)
Q Consensus 343 ~~~lr~L~l~~~~~~~~~~~~l-~~~~~~l~~Lr~L~L~~~~l~~lp-~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L 420 (663)
..+++++.+-..- ..+ ...|..|.+|+.+++..+ ++.++ ..|.++ .|+.+.+.. .++.++.......+|
T Consensus 45 ~~~i~~v~ip~~v------t~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~-~l~~I~~~aF~~~~L 115 (379)
T 4h09_A 45 RDRISEVRVNSGI------TSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGME-RVKKFGDYVFQGTDL 115 (379)
T ss_dssp GGGCSEEEECTTE------EEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECT-TCCEECTTTTTTCCC
T ss_pred ccCCEEEEeCCCc------cChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCc-eeeEeccceeccCCc
Confidence 4567777664431 133 333378888888888643 55444 235554 566666543 344444333333467
Q ss_pred cEeeccCCcccccchhhhcCcCCcEEEccCCCCCCCCCCCcCCCCCCcEeeCcCCC------------------------
Q 037018 421 QTLEMPASYIDHSPEGIWMMQKLMHLNFGSINLPAPPKNYSSSLKNLIFISSLNPS------------------------ 476 (663)
Q Consensus 421 ~~L~L~~~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~------------------------ 476 (663)
+.+.+..+ +..+........+|+.+.+. ......-...+..+.+++.+......
T Consensus 116 ~~i~lp~~-~~~i~~~~F~~~~l~~~~~~-~~v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (379)
T 4h09_A 116 DDFEFPGA-TTEIGNYIFYNSSVKRIVIP-KSVTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAA 193 (379)
T ss_dssp SEEECCTT-CCEECTTTTTTCCCCEEEEC-TTCCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTT
T ss_pred ccccCCCc-cccccccccccceeeeeecc-ceeeccccchhcccccccccccccccceeecccceecccccceecccccc
Confidence 77777554 22222222222245544444 22222222223334444443332211
Q ss_pred -------------CCChhhcCCCCCccEEEeecCCCccccchhhhhcCCCCCCEEEEeecCccccccccccccccCCCCc
Q 037018 477 -------------SCTPDILGRLPNVQTLRISGDLSHYHSGVSKSLCELHKLECLQLVHEGRMWQLSRMVLSEYQFPPCL 543 (663)
Q Consensus 477 -------------~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~lp~~~~~l~~~l~~L 543 (663)
......+..+.+|+.+.+... ........+..+.+|+.+.+. ..++.++.. .+.. +.+|
T Consensus 194 ~~~~~~~~~~~~~~i~~~~f~~~~~l~~i~~~~~---~~~i~~~~f~~~~~L~~i~lp--~~v~~I~~~--aF~~-~~~l 265 (379)
T 4h09_A 194 KTGTEFTIPSTVKTVTAYGFSYGKNLKKITITSG---VTTLGDGAFYGMKALDEIAIP--KNVTSIGSF--LLQN-CTAL 265 (379)
T ss_dssp CCCSEEECCTTCCEECTTTTTTCSSCSEEECCTT---CCEECTTTTTTCSSCCEEEEC--TTCCEECTT--TTTT-CTTC
T ss_pred ccccccccccceeEEeecccccccccceeeeccc---eeEEccccccCCccceEEEcC--CCccEeCcc--ccce-eehh
Confidence 111122333444555544432 222222334455666666664 234444431 2333 6666
Q ss_pred eEEEEecccCCCCChhhhcCCCCCcEEEeecCCCCCceeeecCCCCCCcccEEEccCCCCccccc-cccccccccceEEe
Q 037018 544 TQLSLSNTQLMEDPMPALEKLPHLEVLKLKQNSYSERKLACVGSGSFPQLKILHLKSMLWLEEWT-MGAGAMPKLESLIV 622 (663)
Q Consensus 544 ~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~-~~~~~l~~L~~L~l 622 (663)
+.+.+..+ +.......+.+|++|+.+.+.++.+....... +.++.+|+.+.|.. .++.+. ..+.+|++|+.+.+
T Consensus 266 ~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~a--F~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~i 340 (379)
T 4h09_A 266 KTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRV--FMDCVKLSSVTLPT--ALKTIQVYAFKNCKALSTISY 340 (379)
T ss_dssp CEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTT--TTTCTTCCEEECCT--TCCEECTTTTTTCTTCCCCCC
T ss_pred cccccccc-ceeccccccccccccccccccccccceehhhh--hcCCCCCCEEEcCc--cccEEHHHHhhCCCCCCEEEE
Confidence 66666433 22233345666677777777644443211111 45666677777653 344443 24556666666666
Q ss_pred e
Q 037018 623 N 623 (663)
Q Consensus 623 ~ 623 (663)
.
T Consensus 341 p 341 (379)
T 4h09_A 341 P 341 (379)
T ss_dssp C
T ss_pred C
Confidence 4
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.13 E-value=8.9e-07 Score=80.58 Aligned_cols=84 Identities=8% Similarity=0.047 Sum_probs=66.7
Q ss_pred CCCcEEEeecCCCCCceeeecCCCCCCcccEEEccCCCCccccc-ccccc----ccccceEEeecCCCCCC-CccccCCC
Q 037018 565 PHLEVLKLKQNSYSERKLACVGSGSFPQLKILHLKSMLWLEEWT-MGAGA----MPKLESLIVNPCAYLRK-LPEELWCI 638 (663)
Q Consensus 565 ~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~-~~~~~----l~~L~~L~l~~c~~l~~-l~~~l~~l 638 (663)
.+|+.|++++|.+++..+.. +.++++|++|+|++|..++... ..+.. +++|++|+|++|+.++. --..+.++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~--L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~ 138 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDH--MEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHF 138 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGG--GTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGC
T ss_pred ceEeEEeCcCCCccHHHHHH--hcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcC
Confidence 47999999999988776655 5789999999999998887432 12222 46899999999997763 12346779
Q ss_pred CCCCEEEecCCC
Q 037018 639 KSLCKLELHWPQ 650 (663)
Q Consensus 639 ~sL~~L~l~~c~ 650 (663)
++|++|+|++||
T Consensus 139 ~~L~~L~L~~c~ 150 (176)
T 3e4g_A 139 RNLKYLFLSDLP 150 (176)
T ss_dssp TTCCEEEEESCT
T ss_pred CCCCEEECCCCC
Confidence 999999999998
No 161
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.06 E-value=1.9e-05 Score=82.79 Aligned_cols=138 Identities=14% Similarity=0.140 Sum_probs=88.3
Q ss_pred ccccchhhcHHHHHHHHhcC---CCCceEEEEEec----chhhHHHHHhcCCCccccCCCCccccCCc-eeeccCCCcce
Q 037018 19 CSSKTVKVKVKAVLVWLFML---DSMWLQFLTAVA----YKTAFVADIYNNNVDLSAMNPKLRVPKRF-INKAFPVAFPV 90 (663)
Q Consensus 19 ~~~~G~~~~~~~i~~~L~~~---~~~~~~vi~i~G----GKTtla~~v~~~~~~~~~~~~~~~~~~~F-~~~~~~~~~~v 90 (663)
..++||+.+++++..++... .....+.+.|+| ||||+|+++.+ ...... ...++ +
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~------------~~~~~~~~~~~~-----i 79 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWE------------LYKDKTTARFVY-----I 79 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHH------------HHTTSCCCEEEE-----E
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHH------------HHhhhcCeeEEE-----E
Confidence 46999999999999998762 221333677777 99999999998 433332 12344 5
Q ss_pred EeCCCcchhHHHHHHHHHHHhCCCCCcchhhhhHhhHHHHHHHHhh--cCCcEEEEEeCCCC-ChhhHHHHHhhCCCCC-
Q 037018 91 DVNCACNAQLNHILDDIIKSVMPPSRVNVIISEDYKLKTIILRDYL--TNKKDFIVLDDVFD-DREIWNDLEKFLPDNQ- 166 (663)
Q Consensus 91 ~vs~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~~l~~~L--~~kr~LlVLDdv~~-~~~~~~~l~~~~~~~~- 166 (663)
..+...+ ...+.+.++.+++......+.. ...+ ...+.+.+ .+++.+|||||+.. +......+...+....
T Consensus 80 ~~~~~~~--~~~~~~~l~~~l~~~~~~~~~~--~~~~-~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~ 154 (389)
T 1fnn_A 80 NGFIYRN--FTAIIGEIARSLNIPFPRRGLS--RDEF-LALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADK 154 (389)
T ss_dssp ETTTCCS--HHHHHHHHHHHTTCCCCSSCCC--HHHH-HHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHH
T ss_pred eCccCCC--HHHHHHHHHHHhCccCCCCCCC--HHHH-HHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCC
Confidence 5455566 7888899998886542211111 2233 33344444 35788999999987 5666777766654322
Q ss_pred ---CCceEEEEEeCC
Q 037018 167 ---NGSRVLILVTDP 178 (663)
Q Consensus 167 ---~gskIiiT~r~~ 178 (663)
.+..||+++++.
T Consensus 155 ~~~~~~~iI~~~~~~ 169 (389)
T 1fnn_A 155 LGAFRIALVIVGHND 169 (389)
T ss_dssp HSSCCEEEEEEESST
T ss_pred CCcCCEEEEEEECCc
Confidence 366677776644
No 162
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.00 E-value=2.9e-06 Score=78.94 Aligned_cols=84 Identities=17% Similarity=0.172 Sum_probs=59.2
Q ss_pred hHHhcCCCcccEEEecCC-cCc-----ccCccCCCCCCcCeEeccCCCCc-----cchhhhcccccccEeeccCCcccc-
Q 037018 365 ENFCKKFKHLRVLNLGSA-ILY-----QYPPGLENLFHLKYLKLNIPSLN-----CLPSLLCTLLNLQTLEMPASYIDH- 432 (663)
Q Consensus 365 ~~~~~~l~~Lr~L~L~~~-~l~-----~lp~~~~~l~~L~~L~L~~~~i~-----~lp~~i~~L~~L~~L~L~~~~l~~- 432 (663)
...+...+.|+.|+|++| .+. .+...+...++|++|+|++|.+. .+...+...++|++|+|++|.++.
T Consensus 29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~ 108 (185)
T 1io0_A 29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGS 108 (185)
T ss_dssp HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHH
T ss_pred HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHH
Confidence 444578888888888888 775 24455666778888888888876 345556666788888888886654
Q ss_pred ----cchhhhcCcCCcEEEc
Q 037018 433 ----SPEGIWMMQKLMHLNF 448 (663)
Q Consensus 433 ----lp~~l~~l~~L~~L~l 448 (663)
+...+...++|++|++
T Consensus 109 g~~~l~~~L~~n~~L~~L~L 128 (185)
T 1io0_A 109 GILALVEALQSNTSLIELRI 128 (185)
T ss_dssp HHHHHHHGGGGCSSCCEEEC
T ss_pred HHHHHHHHHHhCCCceEEEe
Confidence 3444566667777777
No 163
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=97.95 E-value=1.1e-05 Score=84.32 Aligned_cols=137 Identities=12% Similarity=-0.026 Sum_probs=83.0
Q ss_pred ccccchhhcHHHHHHHHhcC--CCCceEEEEEec----chhhHHHHHhcCCCccccCCCCccccCCc------eeeccCC
Q 037018 19 CSSKTVKVKVKAVLVWLFML--DSMWLQFLTAVA----YKTAFVADIYNNNVDLSAMNPKLRVPKRF------INKAFPV 86 (663)
Q Consensus 19 ~~~~G~~~~~~~i~~~L~~~--~~~~~~vi~i~G----GKTtla~~v~~~~~~~~~~~~~~~~~~~F------~~~~~~~ 86 (663)
..++||+.+++++..++... .. ..+.+.|+| ||||+|+++++ .....+ ...+|
T Consensus 19 ~~~~gr~~~~~~l~~~l~~~~~~~-~~~~vll~G~~G~GKT~l~~~~~~------------~~~~~~~~~~~~~~~~~-- 83 (387)
T 2v1u_A 19 DVLPHREAELRRLAEVLAPALRGE-KPSNALLYGLTGTGKTAVARLVLR------------RLEARASSLGVLVKPIY-- 83 (387)
T ss_dssp SCCTTCHHHHHHHHHTTGGGTSSC-CCCCEEECBCTTSSHHHHHHHHHH------------HHHHHHHHHTCCEEEEE--
T ss_pred CCCCCHHHHHHHHHHHHHHHHcCC-CCCcEEEECCCCCCHHHHHHHHHH------------HHHHHHhccCCCeEEEE--
Confidence 57999999999999998542 22 234556666 99999999998 443221 22345
Q ss_pred CcceEeCCCcchhHHHHHHHHHHHhCCCCCcchhhhhHhhHHHHHHHHhh--cCCcEEEEEeCCCC-Chh--hHHHHHhh
Q 037018 87 AFPVDVNCACNAQLNHILDDIIKSVMPPSRVNVIISEDYKLKTIILRDYL--TNKKDFIVLDDVFD-DRE--IWNDLEKF 161 (663)
Q Consensus 87 ~~~v~vs~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~~l~~~L--~~kr~LlVLDdv~~-~~~--~~~~l~~~ 161 (663)
+......+ ...+...++.+++......+.. ...+ ...+.+.+ .+++.+|||||+.. ... ..+.+...
T Consensus 84 ---i~~~~~~~--~~~~~~~l~~~l~~~~~~~~~~--~~~~-~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l 155 (387)
T 2v1u_A 84 ---VNARHRET--PYRVASAIAEAVGVRVPFTGLS--VGEV-YERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRI 155 (387)
T ss_dssp ---EETTTSCS--HHHHHHHHHHHHSCCCCSSCCC--HHHH-HHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHH
T ss_pred ---EECCcCCC--HHHHHHHHHHHhCCCCCCCCCC--HHHH-HHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhH
Confidence 55555556 8889999999997643211111 2333 45555555 45689999999987 111 23333332
Q ss_pred CC---CC--CCCceEEEEEeCC
Q 037018 162 LP---DN--QNGSRVLILVTDP 178 (663)
Q Consensus 162 ~~---~~--~~gskIiiT~r~~ 178 (663)
+. .. ..+..+|.|++..
T Consensus 156 ~~~~~~~~~~~~~~~I~~t~~~ 177 (387)
T 2v1u_A 156 TRINQELGDRVWVSLVGITNSL 177 (387)
T ss_dssp HHGGGCC-----CEEEEECSCS
T ss_pred hhchhhcCCCceEEEEEEECCC
Confidence 22 11 3355677776544
No 164
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.95 E-value=0.00049 Score=71.59 Aligned_cols=136 Identities=13% Similarity=0.018 Sum_probs=93.5
Q ss_pred CcCCCCCCcEeeCcCCC-CCChhhcCCCCCccEEEeecCCCccccchhhhhcCCCCCCEEEEeecCcccccccccccccc
Q 037018 460 YSSSLKNLIFISSLNPS-SCTPDILGRLPNVQTLRISGDLSHYHSGVSKSLCELHKLECLQLVHEGRMWQLSRMVLSEYQ 538 (663)
Q Consensus 460 ~l~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~lp~~~~~l~~ 538 (663)
.+..+.+|+.+.+...- ......+..+.+|+.+.+..+ ....-...+..+.+|+.+.+. +.+..++.. .+..
T Consensus 212 ~f~~~~~l~~i~~~~~~~~i~~~~f~~~~~L~~i~lp~~---v~~I~~~aF~~~~~l~~i~l~--~~i~~i~~~--aF~~ 284 (379)
T 4h09_A 212 GFSYGKNLKKITITSGVTTLGDGAFYGMKALDEIAIPKN---VTSIGSFLLQNCTALKTLNFY--AKVKTVPYL--LCSG 284 (379)
T ss_dssp TTTTCSSCSEEECCTTCCEECTTTTTTCSSCCEEEECTT---CCEECTTTTTTCTTCCEEEEC--CCCSEECTT--TTTT
T ss_pred ccccccccceeeeccceeEEccccccCCccceEEEcCCC---ccEeCccccceeehhcccccc--ccceecccc--cccc
Confidence 34556777777765543 223345678899999998764 333334567788999999996 457667651 3445
Q ss_pred CCCCceEEEEecccCCCCChhhhcCCCCCcEEEeecCCCCCceeeecCCCCCCcccEEEccCCCCccccc
Q 037018 539 FPPCLTQLSLSNTQLMEDPMPALEKLPHLEVLKLKQNSYSERKLACVGSGSFPQLKILHLKSMLWLEEWT 608 (663)
Q Consensus 539 ~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~ 608 (663)
+++|+.+.+.++.++......|.+|.+|+.+.|.. .+.... . .++.++.+|+.+.+.. .++.+.
T Consensus 285 -c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~-~l~~I~-~-~aF~~C~~L~~i~ip~--~v~~I~ 348 (379)
T 4h09_A 285 -CSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPT-ALKTIQ-V-YAFKNCKALSTISYPK--SITLIE 348 (379)
T ss_dssp -CTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCT-TCCEEC-T-TTTTTCTTCCCCCCCT--TCCEEC
T ss_pred -ccccccccccccccceehhhhhcCCCCCCEEEcCc-cccEEH-H-HHhhCCCCCCEEEECC--ccCEEc
Confidence 89999999998877666667899999999999973 333211 1 1267888999988864 355443
No 165
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.91 E-value=1.4e-05 Score=83.67 Aligned_cols=136 Identities=13% Similarity=0.036 Sum_probs=83.7
Q ss_pred ccccchhhcHHHHHHHHhc--CCCCceEEEEEec----chhhHHHHHhcCCCccccCCCCccccCC--------ceeecc
Q 037018 19 CSSKTVKVKVKAVLVWLFM--LDSMWLQFLTAVA----YKTAFVADIYNNNVDLSAMNPKLRVPKR--------FINKAF 84 (663)
Q Consensus 19 ~~~~G~~~~~~~i~~~L~~--~~~~~~~vi~i~G----GKTtla~~v~~~~~~~~~~~~~~~~~~~--------F~~~~~ 84 (663)
..++||+.+++++.+++.. ... ..+.+-|+| ||||+|+++++ +.... ....+|
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~~~-~~~~vll~G~~G~GKT~la~~l~~------------~~~~~~~~~~~~~~~~~~~ 86 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVKNE-VKFSNLFLGLTGTGKTFVSKYIFN------------EIEEVKKEDEEYKDVKQAY 86 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHTTC-CCCEEEEEECTTSSHHHHHHHHHH------------HHHHHHHHSSSSTTCEEEE
T ss_pred CCCCChHHHHHHHHHHHHHHHcCC-CCCcEEEECCCCCCHHHHHHHHHH------------HHHHHhhhhcCCCCceEEE
Confidence 5799999999999988865 121 234556666 99999999998 44222 123345
Q ss_pred CCCcceEeCCCc-chhHHHHHHHHHHHhCCCCCcchhhhh-HhhHHHHHHHHhhcCCcEEEEEeCCCC-Chhh-HHH-HH
Q 037018 85 PVAFPVDVNCAC-NAQLNHILDDIIKSVMPPSRVNVIISE-DYKLKTIILRDYLTNKKDFIVLDDVFD-DREI-WND-LE 159 (663)
Q Consensus 85 ~~~~~v~vs~~~-~~~~~~l~~~i~~~l~~~~~~~~~~~~-~~~l~~~~l~~~L~~kr~LlVLDdv~~-~~~~-~~~-l~ 159 (663)
+..+... + ...+...++.++....... ... ...+ ...+.+.+..++.+|||||++. .... .+. +.
T Consensus 87 -----i~~~~~~~~--~~~~~~~l~~~l~~~~~~~--~~~~~~~~-~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~ 156 (384)
T 2qby_B 87 -----VNCREVGGT--PQAVLSSLAGKLTGFSVPK--HGINLGEY-IDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLY 156 (384)
T ss_dssp -----EEHHHHCSC--HHHHHHHHHHHHHCSCCCS--SSSCTHHH-HHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHH
T ss_pred -----EECccCCCC--HHHHHHHHHHHhcCCCCCC--CCCCHHHH-HHHHHHHhccCCCEEEEECHHHhccCCCCceeHH
Confidence 4444444 6 7788888888883321100 011 2444 5667777877777999999987 1111 222 22
Q ss_pred hhCCCCCCCceEEEEEeCC
Q 037018 160 KFLPDNQNGSRVLILVTDP 178 (663)
Q Consensus 160 ~~~~~~~~gskIiiT~r~~ 178 (663)
..+... .+.+||+|++..
T Consensus 157 ~l~~~~-~~~~iI~~t~~~ 174 (384)
T 2qby_B 157 QLLRSD-ANISVIMISNDI 174 (384)
T ss_dssp HHHTSS-SCEEEEEECSST
T ss_pred HHhcCC-cceEEEEEECCC
Confidence 222222 678888887754
No 166
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.90 E-value=1e-05 Score=75.21 Aligned_cols=109 Identities=13% Similarity=0.077 Sum_probs=82.7
Q ss_pred CCcccEEEeecC-ccccccccchhHHhcCCCcccEEEecCCcCc-----ccCccCCCCCCcCeEeccCCCCc-----cch
Q 037018 343 DMYLQSFLNHTL-ESDRLALIDCENFCKKFKHLRVLNLGSAILY-----QYPPGLENLFHLKYLKLNIPSLN-----CLP 411 (663)
Q Consensus 343 ~~~lr~L~l~~~-~~~~~~~~~l~~~~~~l~~Lr~L~L~~~~l~-----~lp~~~~~l~~L~~L~L~~~~i~-----~lp 411 (663)
.+.++.|.+.++ .........+...+...++|++|+|++|.+. .+...+...+.|++|+|++|.|. .+.
T Consensus 35 ~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~ 114 (185)
T 1io0_A 35 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALV 114 (185)
T ss_dssp CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHH
T ss_pred CCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHH
Confidence 678999999888 6543222234333488899999999999986 23445566789999999999988 366
Q ss_pred hhhcccccccEeec--cCCcccc-----cchhhhcCcCCcEEEccCC
Q 037018 412 SLLCTLLNLQTLEM--PASYIDH-----SPEGIWMMQKLMHLNFGSI 451 (663)
Q Consensus 412 ~~i~~L~~L~~L~L--~~~~l~~-----lp~~l~~l~~L~~L~l~~~ 451 (663)
..+...++|++|++ ++|.++. +...+...++|++|++++|
T Consensus 115 ~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n 161 (185)
T 1io0_A 115 EALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT 161 (185)
T ss_dssp HGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred HHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCC
Confidence 77888889999999 7787654 4455677889999999844
No 167
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=97.88 E-value=1.5e-05 Score=82.02 Aligned_cols=130 Identities=8% Similarity=0.010 Sum_probs=76.7
Q ss_pred ccccccchhhcHHHHHHHHhcCCCCceEEEEEec----chhhHHHHHhcCCCccccCCCCccccCCceeeccCCCcceEe
Q 037018 17 TSCSSKTVKVKVKAVLVWLFMLDSMWLQFLTAVA----YKTAFVADIYNNNVDLSAMNPKLRVPKRFINKAFPVAFPVDV 92 (663)
Q Consensus 17 ~~~~~~G~~~~~~~i~~~L~~~~~~~~~vi~i~G----GKTtla~~v~~~~~~~~~~~~~~~~~~~F~~~~~~~~~~v~v 92 (663)
....++||+.+.+++.+++... +++.|+| |||||++++.+ +.. .+| +.+
T Consensus 10 ~~~~~~gR~~el~~L~~~l~~~-----~~v~i~G~~G~GKT~Ll~~~~~------------~~~-----~~~-----~~~ 62 (350)
T 2qen_A 10 RREDIFDREEESRKLEESLENY-----PLTLLLGIRRVGKSSLLRAFLN------------ERP-----GIL-----IDC 62 (350)
T ss_dssp SGGGSCSCHHHHHHHHHHHHHC-----SEEEEECCTTSSHHHHHHHHHH------------HSS-----EEE-----EEH
T ss_pred ChHhcCChHHHHHHHHHHHhcC-----CeEEEECCCcCCHHHHHHHHHH------------HcC-----cEE-----EEe
Confidence 3346999999999999998753 4566666 99999999998 431 445 544
Q ss_pred CCCc------chhHHHHHHHHHHHhCCC--------------CCcchhhhh-HhhHHHHHHHHhhcC-CcEEEEEeCCCC
Q 037018 93 NCAC------NAQLNHILDDIIKSVMPP--------------SRVNVIISE-DYKLKTIILRDYLTN-KKDFIVLDDVFD 150 (663)
Q Consensus 93 s~~~------~~~~~~l~~~i~~~l~~~--------------~~~~~~~~~-~~~l~~~~l~~~L~~-kr~LlVLDdv~~ 150 (663)
.... + ...+.+.+.+.+... ......+.. ..++ ...+.+.... ++++||+||+..
T Consensus 63 ~~~~~~~~~~~--~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~vlvlDe~~~ 139 (350)
T 2qen_A 63 RELYAERGHIT--REELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREV-FRELNDLGEELGEFIVAFDEAQY 139 (350)
T ss_dssp HHHHHTTTCBC--HHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHH-HHHHHHHHHHHSCEEEEEETGGG
T ss_pred ecccccccCCC--HHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHH-HHHHHHHHhccCCEEEEEeCHHH
Confidence 3221 3 556666666655420 000000111 3344 4555554443 389999999987
Q ss_pred -Ch-------hhHHHHHhhCCCCCCCceEEEEEeC
Q 037018 151 -DR-------EIWNDLEKFLPDNQNGSRVLILVTD 177 (663)
Q Consensus 151 -~~-------~~~~~l~~~~~~~~~gskIiiT~r~ 177 (663)
+. ..+..+...... .++.++|+|++.
T Consensus 140 ~~~~~~~~~~~~~~~L~~~~~~-~~~~~~il~g~~ 173 (350)
T 2qen_A 140 LRFYGSRGGKELLALFAYAYDS-LPNLKIILTGSE 173 (350)
T ss_dssp GGGBTTTTTHHHHHHHHHHHHH-CTTEEEEEEESS
T ss_pred HhccCccchhhHHHHHHHHHHh-cCCeEEEEECCc
Confidence 21 223333332222 247888888653
No 168
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.83 E-value=1.1e-05 Score=84.20 Aligned_cols=137 Identities=15% Similarity=0.158 Sum_probs=79.9
Q ss_pred ccccchhhcHHHHHHHHhcC--CCCceEEEEEec----chhhHHHHHhcCCCccccCCCCccccCCce---eeccCCCcc
Q 037018 19 CSSKTVKVKVKAVLVWLFML--DSMWLQFLTAVA----YKTAFVADIYNNNVDLSAMNPKLRVPKRFI---NKAFPVAFP 89 (663)
Q Consensus 19 ~~~~G~~~~~~~i~~~L~~~--~~~~~~vi~i~G----GKTtla~~v~~~~~~~~~~~~~~~~~~~F~---~~~~~~~~~ 89 (663)
..++||+.+++++.+++... .. ..+.+.|+| ||||||+++++ .....|. ..+|
T Consensus 20 ~~~~gr~~e~~~l~~~l~~~~~~~-~~~~vli~G~~G~GKTtl~~~l~~------------~~~~~~~~~~~~~~----- 81 (386)
T 2qby_A 20 DELPHREDQIRKIASILAPLYREE-KPNNIFIYGLTGTGKTAVVKFVLS------------KLHKKFLGKFKHVY----- 81 (386)
T ss_dssp SCCTTCHHHHHHHHHSSGGGGGTC-CCCCEEEEECTTSSHHHHHHHHHH------------HHHHHTCSSCEEEE-----
T ss_pred CCCCChHHHHHHHHHHHHHHHcCC-CCCeEEEECCCCCCHHHHHHHHHH------------HHHHHhcCCceEEE-----
Confidence 57999999999999998742 11 234455555 99999999999 4443332 2344
Q ss_pred eEeCCCcchhHHHHHHHHHHHhCCCCCcchhhhhHhhHHHHHHHHhhc--CCcEEEEEeCCCC-C----hhhHHHHHhhC
Q 037018 90 VDVNCACNAQLNHILDDIIKSVMPPSRVNVIISEDYKLKTIILRDYLT--NKKDFIVLDDVFD-D----REIWNDLEKFL 162 (663)
Q Consensus 90 v~vs~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~~l~~~L~--~kr~LlVLDdv~~-~----~~~~~~l~~~~ 162 (663)
+......+ ...+...++.+++......+.. ..+. ...+.+.+. +++.+|||||++. . ...+..+...+
T Consensus 82 i~~~~~~~--~~~~~~~i~~~l~~~~~~~~~~--~~~~-~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~ 156 (386)
T 2qby_A 82 INTRQIDT--PYRVLADLLESLDVKVPFTGLS--IAEL-YRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRIN 156 (386)
T ss_dssp EEHHHHCS--HHHHHHHHTTTTSCCCCSSSCC--HHHH-HHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHH
T ss_pred EECCCCCC--HHHHHHHHHHHhCCCCCCCCCC--HHHH-HHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhch
Confidence 44444445 6777888887775532211111 2233 344444443 4589999999976 1 23444444433
Q ss_pred CC-CCCCceEEEEEeCC
Q 037018 163 PD-NQNGSRVLILVTDP 178 (663)
Q Consensus 163 ~~-~~~gskIiiT~r~~ 178 (663)
.. ...+..+|+|++..
T Consensus 157 ~~~~~~~~~~I~~~~~~ 173 (386)
T 2qby_A 157 SEVNKSKISFIGITNDV 173 (386)
T ss_dssp HSCCC--EEEEEEESCG
T ss_pred hhcCCCeEEEEEEECCC
Confidence 22 22344556666543
No 169
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=97.80 E-value=3.1e-05 Score=73.83 Aligned_cols=121 Identities=10% Similarity=0.020 Sum_probs=72.1
Q ss_pred ccccchhhcHHHHHHHHhcCCCCceEEEEEec----chhhHHHHHhcCCCccccCCCCccccCCceeeccCCCcceEeCC
Q 037018 19 CSSKTVKVKVKAVLVWLFMLDSMWLQFLTAVA----YKTAFVADIYNNNVDLSAMNPKLRVPKRFINKAFPVAFPVDVNC 94 (663)
Q Consensus 19 ~~~~G~~~~~~~i~~~L~~~~~~~~~vi~i~G----GKTtla~~v~~~~~~~~~~~~~~~~~~~F~~~~~~~~~~v~vs~ 94 (663)
..++|++..++++.+++....... +-|+| ||||+|+.+++ ++........+ +.+..
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~~~~~---~ll~G~~G~GKT~l~~~l~~------------~~~~~~~~~~~-----~~~~~ 76 (226)
T 2chg_A 17 DEVVGQDEVIQRLKGYVERKNIPH---LLFSGPPGTGKTATAIALAR------------DLFGENWRDNF-----IEMNA 76 (226)
T ss_dssp GGCCSCHHHHHHHHHHHHTTCCCC---EEEECSTTSSHHHHHHHHHH------------HHHGGGGGGGE-----EEEET
T ss_pred HHHcCcHHHHHHHHHHHhCCCCCe---EEEECCCCCCHHHHHHHHHH------------HHhccccccce-----EEecc
Confidence 468999999999999998764323 55666 99999999998 44333222334 44432
Q ss_pred CcchhHHHHHHHHHHHhCCCCCcchhhhhHhhHHHHHHHHhhcCCcEEEEEeCCCC-ChhhHHHHHhhCCCCCCCceEEE
Q 037018 95 ACNAQLNHILDDIIKSVMPPSRVNVIISEDYKLKTIILRDYLTNKKDFIVLDDVFD-DREIWNDLEKFLPDNQNGSRVLI 173 (663)
Q Consensus 95 ~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~~l~~~L~~kr~LlVLDdv~~-~~~~~~~l~~~~~~~~~gskIii 173 (663)
....+...+.+.+....... ..-.+++.+||+||+.. ....++.+...+.....+.++|+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~ 137 (226)
T 2chg_A 77 SDERGIDVVRHKIKEFARTA-------------------PIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFIL 137 (226)
T ss_dssp TCTTCHHHHHHHHHHHHTSC-------------------CSTTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEE
T ss_pred ccccChHHHHHHHHHHhccc-------------------CCCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEE
Confidence 21100222111111000000 01135788999999987 45666777766655556788888
Q ss_pred EEeCC
Q 037018 174 LVTDP 178 (663)
Q Consensus 174 T~r~~ 178 (663)
|+...
T Consensus 138 ~~~~~ 142 (226)
T 2chg_A 138 SCNYV 142 (226)
T ss_dssp EESCG
T ss_pred EeCCh
Confidence 87644
No 170
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=97.72 E-value=4.2e-05 Score=78.88 Aligned_cols=37 Identities=8% Similarity=-0.075 Sum_probs=30.7
Q ss_pred cccccchhhcHHHHHHHHhcCCCCceEEEEEec----chhhHHHHHhc
Q 037018 18 SCSSKTVKVKVKAVLVWLFMLDSMWLQFLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 18 ~~~~~G~~~~~~~i~~~L~~~~~~~~~vi~i~G----GKTtla~~v~~ 61 (663)
...++||+.+.+++.+ +.. +++.|+| |||||++++.+
T Consensus 12 ~~~~~gR~~el~~L~~-l~~------~~v~i~G~~G~GKT~L~~~~~~ 52 (357)
T 2fna_A 12 RKDFFDREKEIEKLKG-LRA------PITLVLGLRRTGKSSIIKIGIN 52 (357)
T ss_dssp GGGSCCCHHHHHHHHH-TCS------SEEEEEESTTSSHHHHHHHHHH
T ss_pred HHHhcChHHHHHHHHH-hcC------CcEEEECCCCCCHHHHHHHHHH
Confidence 3469999999999999 654 3566666 99999999998
No 171
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=97.68 E-value=2.3e-05 Score=75.86 Aligned_cols=133 Identities=15% Similarity=0.041 Sum_probs=74.6
Q ss_pred cccccchhhcHHHHHHHHhcCCCCceEEEEEec----chhhHHHHHhcCCCccccCCCCccccCCceeeccCCCcceEeC
Q 037018 18 SCSSKTVKVKVKAVLVWLFMLDSMWLQFLTAVA----YKTAFVADIYNNNVDLSAMNPKLRVPKRFINKAFPVAFPVDVN 93 (663)
Q Consensus 18 ~~~~~G~~~~~~~i~~~L~~~~~~~~~vi~i~G----GKTtla~~v~~~~~~~~~~~~~~~~~~~F~~~~~~~~~~v~vs 93 (663)
...++|++..++.+..++..... ..++-|+| ||||+|+++++ +....+....+ ...
T Consensus 22 ~~~~~g~~~~~~~l~~~l~~~~~--~~~~ll~G~~G~GKT~l~~~~~~------------~~~~~~~~~~~------~~~ 81 (250)
T 1njg_A 22 FADVVGQEHVLTALANGLSLGRI--HHAYLFSGTRGVGKTSIARLLAK------------GLNCETGITAT------PCG 81 (250)
T ss_dssp GGGCCSCHHHHHHHHHHHHHTCC--CSEEEEECSTTSCHHHHHHHHHH------------HHHCTTCSCSS------CCS
T ss_pred HHHHhCcHHHHHHHHHHHHcCCC--CeEEEEECCCCCCHHHHHHHHHH------------HhcCCCCCCCC------CCc
Confidence 34699999999999999987543 23566777 99999999998 33332211111 000
Q ss_pred CCcchhHHHHHHHHHHHhCCCC-Ccchhhhh-HhhHHHHHHHHhh-----cCCcEEEEEeCCCC-ChhhHHHHHhhCCCC
Q 037018 94 CACNAQLNHILDDIIKSVMPPS-RVNVIISE-DYKLKTIILRDYL-----TNKKDFIVLDDVFD-DREIWNDLEKFLPDN 165 (663)
Q Consensus 94 ~~~~~~~~~l~~~i~~~l~~~~-~~~~~~~~-~~~l~~~~l~~~L-----~~kr~LlVLDdv~~-~~~~~~~l~~~~~~~ 165 (663)
...+ ... +........ ........ .+.+ ..+.+.+ .+++.+||+||++. +...++.+...+...
T Consensus 82 ~~~~--~~~----~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~ 153 (250)
T 1njg_A 82 VCDN--CRE----IEQGRFVDLIEIDAASRTKVEDT--RDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEP 153 (250)
T ss_dssp CSHH--HHH----HHTTCCSSEEEEETTCGGGHHHH--HHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSC
T ss_pred ccHH--HHH----HhccCCcceEEecCcccccHHHH--HHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcC
Confidence 0111 111 111100000 00000000 1222 2222332 35789999999976 577788888777665
Q ss_pred CCCceEEEEEeCC
Q 037018 166 QNGSRVLILVTDP 178 (663)
Q Consensus 166 ~~gskIiiT~r~~ 178 (663)
..+.+||+|++..
T Consensus 154 ~~~~~~i~~t~~~ 166 (250)
T 1njg_A 154 PEHVKFLLATTDP 166 (250)
T ss_dssp CTTEEEEEEESCG
T ss_pred CCceEEEEEeCCh
Confidence 6678888887644
No 172
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.55 E-value=5.6e-05 Score=74.05 Aligned_cols=81 Identities=21% Similarity=0.144 Sum_probs=60.6
Q ss_pred hcCCCcccEEEecCCcCcc---cCccCCCCCCcCeEeccCCCCccchhhhcccc--cccEeeccCCcccc-cc-------
Q 037018 368 CKKFKHLRVLNLGSAILYQ---YPPGLENLFHLKYLKLNIPSLNCLPSLLCTLL--NLQTLEMPASYIDH-SP------- 434 (663)
Q Consensus 368 ~~~l~~Lr~L~L~~~~l~~---lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~--~L~~L~L~~~~l~~-lp------- 434 (663)
..++++|+.|+|++|.+.. +|..+..+++|++|+|++|.|..+. .+..+. +|++|++++|.+.. +|
T Consensus 166 ~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 166 EENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER-ELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG-GGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred HhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCch-hhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 3678899999999999874 3455668899999999999888763 445555 89999999986643 33
Q ss_pred hhhhcCcCCcEEEcc
Q 037018 435 EGIWMMQKLMHLNFG 449 (663)
Q Consensus 435 ~~l~~l~~L~~L~l~ 449 (663)
..+..+++|+.|+-.
T Consensus 245 ~il~~~P~L~~LDg~ 259 (267)
T 3rw6_A 245 AIRERFPKLLRLDGH 259 (267)
T ss_dssp HHHHHCTTCCEESSC
T ss_pred HHHHHCcccCeECCc
Confidence 236778888888754
No 173
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.36 E-value=0.00014 Score=73.77 Aligned_cols=118 Identities=11% Similarity=0.046 Sum_probs=70.0
Q ss_pred cccccchhhcHHHHHHHHhcCCCCceEEEEEec----chhhHHHHHhcCCCccccCCCCccccCCceeeccCCCcceEeC
Q 037018 18 SCSSKTVKVKVKAVLVWLFMLDSMWLQFLTAVA----YKTAFVADIYNNNVDLSAMNPKLRVPKRFINKAFPVAFPVDVN 93 (663)
Q Consensus 18 ~~~~~G~~~~~~~i~~~L~~~~~~~~~vi~i~G----GKTtla~~v~~~~~~~~~~~~~~~~~~~F~~~~~~~~~~v~vs 93 (663)
...++|++..++.+.+++.....+. +-++| ||||+|+.+.+ .+........+ +.+.
T Consensus 20 ~~~~~g~~~~~~~l~~~l~~~~~~~---~ll~G~~G~GKt~la~~l~~------------~l~~~~~~~~~-----~~~~ 79 (323)
T 1sxj_B 20 LSDIVGNKETIDRLQQIAKDGNMPH---MIISGMPGIGKTTSVHCLAH------------ELLGRSYADGV-----LELN 79 (323)
T ss_dssp GGGCCSCTHHHHHHHHHHHSCCCCC---EEEECSTTSSHHHHHHHHHH------------HHHGGGHHHHE-----EEEC
T ss_pred HHHHHCCHHHHHHHHHHHHcCCCCe---EEEECcCCCCHHHHHHHHHH------------HhcCCcccCCE-----EEec
Confidence 3469999999999999998764322 56666 99999999998 43222211223 3333
Q ss_pred CCcchhHHHHHHHHHHHhCCCCCcchhhhhHhhHHHHHHH---Hhh-cCCcEEEEEeCCCC-ChhhHHHHHhhCCCCCCC
Q 037018 94 CACNAQLNHILDDIIKSVMPPSRVNVIISEDYKLKTIILR---DYL-TNKKDFIVLDDVFD-DREIWNDLEKFLPDNQNG 168 (663)
Q Consensus 94 ~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~~l~---~~L-~~kr~LlVLDdv~~-~~~~~~~l~~~~~~~~~g 168 (663)
.....+...+ .+. ...+. ..+ .+++.+||+||++. ....++.+...+.....+
T Consensus 80 ~~~~~~~~~i---------------------~~~-~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~ 137 (323)
T 1sxj_B 80 ASDDRGIDVV---------------------RNQ-IKHFAQKKLHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNS 137 (323)
T ss_dssp TTSCCSHHHH---------------------HTH-HHHHHHBCCCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTT
T ss_pred CccccChHHH---------------------HHH-HHHHHhccccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCC
Confidence 2211001111 111 11111 112 45688999999987 455666666655544557
Q ss_pred ceEEEEEeC
Q 037018 169 SRVLILVTD 177 (663)
Q Consensus 169 skIiiT~r~ 177 (663)
.++|+|+..
T Consensus 138 ~~~il~~~~ 146 (323)
T 1sxj_B 138 TRFAFACNQ 146 (323)
T ss_dssp EEEEEEESC
T ss_pred ceEEEEeCC
Confidence 788888754
No 174
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.27 E-value=0.00015 Score=70.91 Aligned_cols=38 Identities=29% Similarity=0.474 Sum_probs=17.2
Q ss_pred CCCCCCEEEEeecCcccccc---ccccccccCCCCceEEEEecccC
Q 037018 511 ELHKLECLQLVHEGRMWQLS---RMVLSEYQFPPCLTQLSLSNTQL 553 (663)
Q Consensus 511 ~l~~L~~L~l~~~~~l~~lp---~~~~~l~~~l~~L~~L~L~~~~l 553 (663)
++++|+.|+|++ |.+..++ . .+.. +++|+.|+|++|.+
T Consensus 168 ~l~~L~~L~Ls~-N~l~~l~~l~~---~~~~-l~~L~~L~Ls~N~i 208 (267)
T 3rw6_A 168 NIPELLSLNLSN-NRLYRLDDMSS---IVQK-APNLKILNLSGNEL 208 (267)
T ss_dssp HCTTCCEEECTT-SCCCCCGGGTT---HHHH-STTCCEEECTTSCC
T ss_pred hCCCCCEEECCC-CCCCCCccchh---HHhh-CCCCCEEECCCCcc
Confidence 445555555554 4444332 2 2223 44444444444444
No 175
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=97.18 E-value=0.00045 Score=69.35 Aligned_cols=131 Identities=11% Similarity=0.087 Sum_probs=73.9
Q ss_pred cccchhhcHHHHHHHHhc----CCCCceEEEEEec-chhhHHHHHhcCCCccccCCCCccccCCc-----eeeccCCCcc
Q 037018 20 SSKTVKVKVKAVLVWLFM----LDSMWLQFLTAVA-YKTAFVADIYNNNVDLSAMNPKLRVPKRF-----INKAFPVAFP 89 (663)
Q Consensus 20 ~~~G~~~~~~~i~~~L~~----~~~~~~~vi~i~G-GKTtla~~v~~~~~~~~~~~~~~~~~~~F-----~~~~~~~~~~ 89 (663)
.+.||+++.+++...|.. .....+-+.|-.| |||++|++|.+. ..... ....+
T Consensus 21 ~L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~------------L~~~~~~~~~~~~~~----- 83 (318)
T 3te6_A 21 LLKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDE------------LITSSARKELPIFDY----- 83 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHH------------HHHTTTTTSSCCEEE-----
T ss_pred ccCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHH------------HHHHhhhccCCceEE-----
Confidence 488999999999977754 2222344444455 999999999993 32111 11223
Q ss_pred eEeC--CCcchhHHHHHHHHHHHhCCCCCcchhhhhHhhHHHHHHHHhh---cCCcEEEEEeCCCCChhhHHHHHhhCCC
Q 037018 90 VDVN--CACNAQLNHILDDIIKSVMPPSRVNVIISEDYKLKTIILRDYL---TNKKDFIVLDDVFDDREIWNDLEKFLPD 164 (663)
Q Consensus 90 v~vs--~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~~l~~~L---~~kr~LlVLDdv~~~~~~~~~l~~~~~~ 164 (663)
|.+. .-.+ ...+...|++++.+.....+ .. ...+ ..+.+.+ .++++++|||++.. ..+.+.+...+.+
T Consensus 84 v~INc~~~~t--~~~~~~~I~~~L~g~~~~~~-~~-~~~L--~~~f~~~~~~~~~~~ii~lDE~d~-l~~q~~L~~l~~~ 156 (318)
T 3te6_A 84 IHIDALELAG--MDALYEKIWFAISKENLCGD-IS-LEAL--NFYITNVPKAKKRKTLILIQNPEN-LLSEKILQYFEKW 156 (318)
T ss_dssp EEEETTCCC----HHHHHHHHHHHSCCC--CC-CC-HHHH--HHHHHHSCGGGSCEEEEEEECCSS-SCCTHHHHHHHHH
T ss_pred EEEeccccCC--HHHHHHHHHHHhcCCCCCch-HH-HHHH--HHHHHHhhhccCCceEEEEecHHH-hhcchHHHHHHhc
Confidence 4444 3345 77899999999976432110 11 2333 3333333 46789999999987 3233444443321
Q ss_pred C-CCCceEEEE
Q 037018 165 N-QNGSRVLIL 174 (663)
Q Consensus 165 ~-~~gskIiiT 174 (663)
. ..+|+++|.
T Consensus 157 ~~~~~s~~~vI 167 (318)
T 3te6_A 157 ISSKNSKLSII 167 (318)
T ss_dssp HHCSSCCEEEE
T ss_pred ccccCCcEEEE
Confidence 1 234555444
No 176
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=96.99 E-value=0.00064 Score=69.02 Aligned_cols=119 Identities=13% Similarity=0.063 Sum_probs=70.6
Q ss_pred ccccchhhcHHHHHHHHhcCCCCceEEEEEec----chhhHHHHHhcCCCccccCCCCccccCCceeeccCCCcceEeCC
Q 037018 19 CSSKTVKVKVKAVLVWLFMLDSMWLQFLTAVA----YKTAFVADIYNNNVDLSAMNPKLRVPKRFINKAFPVAFPVDVNC 94 (663)
Q Consensus 19 ~~~~G~~~~~~~i~~~L~~~~~~~~~vi~i~G----GKTtla~~v~~~~~~~~~~~~~~~~~~~F~~~~~~~~~~v~vs~ 94 (663)
..++|++..++.+.+++....... +-++| ||||+|+++++ .+........+ +.+..
T Consensus 25 ~~~~g~~~~~~~l~~~l~~~~~~~---~ll~G~~G~GKT~la~~l~~------------~l~~~~~~~~~-----~~~~~ 84 (327)
T 1iqp_A 25 DDIVGQEHIVKRLKHYVKTGSMPH---LLFAGPPGVGKTTAALALAR------------ELFGENWRHNF-----LELNA 84 (327)
T ss_dssp TTCCSCHHHHHHHHHHHHHTCCCE---EEEESCTTSSHHHHHHHHHH------------HHHGGGHHHHE-----EEEET
T ss_pred HHhhCCHHHHHHHHHHHHcCCCCe---EEEECcCCCCHHHHHHHHHH------------HhcCCcccCce-----EEeec
Confidence 469999999999999998764322 56666 99999999998 43222211223 33332
Q ss_pred CcchhHHHHHHHHHHHhCCCCCcchhhhhHhhHHHHHHH-Hhhc-CCcEEEEEeCCCC-ChhhHHHHHhhCCCCCCCceE
Q 037018 95 ACNAQLNHILDDIIKSVMPPSRVNVIISEDYKLKTIILR-DYLT-NKKDFIVLDDVFD-DREIWNDLEKFLPDNQNGSRV 171 (663)
Q Consensus 95 ~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~~l~-~~L~-~kr~LlVLDdv~~-~~~~~~~l~~~~~~~~~gskI 171 (663)
....+...+. +.+ ..... ..+. +++.++|+||++. ....++.+...+.....+.++
T Consensus 85 ~~~~~~~~~~--------------------~~~-~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~ 143 (327)
T 1iqp_A 85 SDERGINVIR--------------------EKV-KEFARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRF 143 (327)
T ss_dssp TCHHHHHTTH--------------------HHH-HHHHHSCCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEE
T ss_pred cccCchHHHH--------------------HHH-HHHHhhCCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeE
Confidence 2110010000 011 11111 1122 6788999999987 456777777766555567888
Q ss_pred EEEEeCC
Q 037018 172 LILVTDP 178 (663)
Q Consensus 172 iiT~r~~ 178 (663)
|+|+...
T Consensus 144 i~~~~~~ 150 (327)
T 1iqp_A 144 ILSCNYS 150 (327)
T ss_dssp EEEESCG
T ss_pred EEEeCCc
Confidence 8887543
No 177
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.67 E-value=0.00069 Score=62.53 Aligned_cols=43 Identities=12% Similarity=-0.036 Sum_probs=33.0
Q ss_pred ccccchhhcHHHHHHHHhcCCCCceEEEEEec-chhhHHHHHhc
Q 037018 19 CSSKTVKVKVKAVLVWLFMLDSMWLQFLTAVA-YKTAFVADIYN 61 (663)
Q Consensus 19 ~~~~G~~~~~~~i~~~L~~~~~~~~~vi~i~G-GKTtla~~v~~ 61 (663)
..++|++..++++.+.+.......+-+.|-.| ||||+|+++.+
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~ 65 (195)
T 1jbk_A 22 DPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQ 65 (195)
T ss_dssp CCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHH
T ss_pred cccccchHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999875432344444444 99999999988
No 178
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.37 E-value=0.0045 Score=56.71 Aligned_cols=38 Identities=16% Similarity=0.054 Sum_probs=25.5
Q ss_pred hhhcHHHHHHHHhcCCCCceEEEEEec----chhhHHHHHhc
Q 037018 24 VKVKVKAVLVWLFMLDSMWLQFLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 24 ~~~~~~~i~~~L~~~~~~~~~vi~i~G----GKTtla~~v~~ 61 (663)
.+..++.+.+++..-....-..++++| ||||||+++++
T Consensus 19 ~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~ 60 (180)
T 3ec2_A 19 QNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLK 60 (180)
T ss_dssp HHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHH
Confidence 444455555555443322346788888 99999999998
No 179
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.17 E-value=0.0025 Score=58.41 Aligned_cols=43 Identities=14% Similarity=-0.039 Sum_probs=32.6
Q ss_pred ccccchhhcHHHHHHHHhcCCCCceEEEEEec-chhhHHHHHhc
Q 037018 19 CSSKTVKVKVKAVLVWLFMLDSMWLQFLTAVA-YKTAFVADIYN 61 (663)
Q Consensus 19 ~~~~G~~~~~~~i~~~L~~~~~~~~~vi~i~G-GKTtla~~v~~ 61 (663)
..++|++.+++++.+.+.......+-+.|-.| ||||+|+++.+
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~ 65 (187)
T 2p65_A 22 DPVIGRDTEIRRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAI 65 (187)
T ss_dssp CCCCSCHHHHHHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHH
T ss_pred chhhcchHHHHHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999875432333333334 99999999988
No 180
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=96.14 E-value=0.0079 Score=60.54 Aligned_cols=118 Identities=9% Similarity=-0.028 Sum_probs=68.7
Q ss_pred cccccchhhcHHHHHHHHhcCCCCceEEEEEec----chhhHHHHHhcCCCccccCCCCccccCCceeeccCCCcceEeC
Q 037018 18 SCSSKTVKVKVKAVLVWLFMLDSMWLQFLTAVA----YKTAFVADIYNNNVDLSAMNPKLRVPKRFINKAFPVAFPVDVN 93 (663)
Q Consensus 18 ~~~~~G~~~~~~~i~~~L~~~~~~~~~vi~i~G----GKTtla~~v~~~~~~~~~~~~~~~~~~~F~~~~~~~~~~v~vs 93 (663)
-..++|++..++.+.+++.....+. +-++| ||||+|+.+.+ .+...-....+ +.+.
T Consensus 16 ~~~~~g~~~~~~~l~~~l~~~~~~~---~ll~G~~G~GKt~la~~l~~------------~l~~~~~~~~~-----~~~~ 75 (319)
T 2chq_A 16 LDEVVGQDEVIQRLKGYVERKNIPH---LLFSGPPGTGKTATAIALAR------------DLFGENWRDNF-----IEMN 75 (319)
T ss_dssp GGGSCSCHHHHHHHHTTTTTTCCCC---EEEESSSSSSHHHHHHHHHH------------HHHTTCHHHHC-----EEEE
T ss_pred HHHHhCCHHHHHHHHHHHhCCCCCe---EEEECcCCcCHHHHHHHHHH------------HhcCCcccCCe-----EEEe
Confidence 3469999999999999887654322 56666 99999999998 43211111122 3332
Q ss_pred CCcchhHHHHHHHHHHHhCCCCCcchhhhhHhhHHHHHHHHh--h-cCCcEEEEEeCCCC-ChhhHHHHHhhCCCCCCCc
Q 037018 94 CACNAQLNHILDDIIKSVMPPSRVNVIISEDYKLKTIILRDY--L-TNKKDFIVLDDVFD-DREIWNDLEKFLPDNQNGS 169 (663)
Q Consensus 94 ~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~~l~~~--L-~~kr~LlVLDdv~~-~~~~~~~l~~~~~~~~~gs 169 (663)
.... ... +. .... .....+. + .+++-++|+||+.. ....++.+...+.....+.
T Consensus 76 ~~~~--------------~~~------~~-~~~~-~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~ 133 (319)
T 2chq_A 76 ASDE--------------RGI------DV-VRHK-IKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSC 133 (319)
T ss_dssp TTST--------------TCT------TT-SSHH-HHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSE
T ss_pred Cccc--------------cCh------HH-HHHH-HHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCC
Confidence 2111 000 00 0111 1111111 2 25688999999986 4566777777776655677
Q ss_pred eEEEEEeC
Q 037018 170 RVLILVTD 177 (663)
Q Consensus 170 kIiiT~r~ 177 (663)
++|+|+..
T Consensus 134 ~~i~~~~~ 141 (319)
T 2chq_A 134 RFILSCNY 141 (319)
T ss_dssp EEEEEESC
T ss_pred eEEEEeCC
Confidence 78877653
No 181
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.01 E-value=0.004 Score=58.24 Aligned_cols=35 Identities=17% Similarity=0.051 Sum_probs=22.7
Q ss_pred cHHHHHHHHhcCCCC-ceEEEEEec----chhhHHHHHhc
Q 037018 27 KVKAVLVWLFMLDSM-WLQFLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 27 ~~~~i~~~L~~~~~~-~~~vi~i~G----GKTtla~~v~~ 61 (663)
.++.+..++...... ..+.+-|+| ||||||+++++
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~ 76 (202)
T 2w58_A 37 AIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIAN 76 (202)
T ss_dssp HHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHH
Confidence 445555666544321 114566777 99999999999
No 182
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=95.91 E-value=0.012 Score=58.22 Aligned_cols=44 Identities=5% Similarity=-0.144 Sum_probs=31.6
Q ss_pred cccccchhhcHHHHHHHHhcC----------CCCceEEEEEec----chhhHHHHHhc
Q 037018 18 SCSSKTVKVKVKAVLVWLFML----------DSMWLQFLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 18 ~~~~~G~~~~~~~i~~~L~~~----------~~~~~~vi~i~G----GKTtla~~v~~ 61 (663)
-..++|.+..++++.+.+... .....+-+-|+| ||||+|+++.+
T Consensus 16 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~ 73 (285)
T 3h4m_A 16 YEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVAT 73 (285)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHH
Confidence 346999999999999887431 000223355666 99999999999
No 183
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=95.91 E-value=0.015 Score=61.53 Aligned_cols=99 Identities=18% Similarity=0.219 Sum_probs=56.5
Q ss_pred EEEEEec----chhhHHHHHhcCCCccccCCCCccccCCceeeccCCCcceEeCCCcchhHHHHHHHHHHHhCCCCCcch
Q 037018 44 QFLTAVA----YKTAFVADIYNNNVDLSAMNPKLRVPKRFINKAFPVAFPVDVNCACNAQLNHILDDIIKSVMPPSRVNV 119 (663)
Q Consensus 44 ~vi~i~G----GKTtla~~v~~~~~~~~~~~~~~~~~~~F~~~~~~~~~~v~vs~~~~~~~~~l~~~i~~~l~~~~~~~~ 119 (663)
..+.|+| ||||||+++.+ .+..+|...-+ +.++ ...+..++...+....
T Consensus 131 ~~lll~Gp~G~GKTtLa~aia~------------~l~~~~~~~~v-----~~v~------~~~~~~~~~~~~~~~~---- 183 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLLQSIGN------------YVVQNEPDLRV-----MYIT------SEKFLNDLVDSMKEGK---- 183 (440)
T ss_dssp CCEEEECSSSSSHHHHHHHHHH------------HHHHHCCSSCE-----EEEE------HHHHHHHHHHHHHTTC----
T ss_pred CeEEEECCCCCCHHHHHHHHHH------------HHHHhCCCCeE-----EEee------HHHHHHHHHHHHHccc----
Confidence 3455555 99999999999 55444433223 3332 4445555555543321
Q ss_pred hhhhHhhHHHHHHHHhhcCCcEEEEEeCCCC--C-hhhHHHHHhhCCC-CCCCceEEEEEeCC
Q 037018 120 IISEDYKLKTIILRDYLTNKKDFIVLDDVFD--D-REIWNDLEKFLPD-NQNGSRVLILVTDP 178 (663)
Q Consensus 120 ~~~~~~~l~~~~l~~~L~~kr~LlVLDdv~~--~-~~~~~~l~~~~~~-~~~gskIiiT~r~~ 178 (663)
...+.+.+..+.-+|++||+.. + ....+.+...+.. ...|..||+|+...
T Consensus 184 ---------~~~~~~~~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~ 237 (440)
T 2z4s_A 184 ---------LNEFREKYRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDRE 237 (440)
T ss_dssp ---------HHHHHHHHTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSC
T ss_pred ---------HHHHHHHhcCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 2233344444677899999976 1 1344555544431 23577899887654
No 184
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.84 E-value=0.016 Score=59.25 Aligned_cols=39 Identities=8% Similarity=-0.162 Sum_probs=30.0
Q ss_pred cccchhhcHHHHHHHH-hcCCCCceEEEEEec----chhhHHHHHhc
Q 037018 20 SSKTVKVKVKAVLVWL-FMLDSMWLQFLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 20 ~~~G~~~~~~~i~~~L-~~~~~~~~~vi~i~G----GKTtla~~v~~ 61 (663)
.++|.+..++.+.+++ .....+. +.|+| ||||+|+.+.+
T Consensus 15 ~~vg~~~~~~~l~~~~~~~~~~~~---~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 15 ALSHNEELTNFLKSLSDQPRDLPH---LLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp GCCSCHHHHHHHHTTTTCTTCCCC---EEEECSTTSSHHHHHHTHHH
T ss_pred HhcCCHHHHHHHHHHHhhCCCCCe---EEEECCCCCCHHHHHHHHHH
Confidence 5899999999888888 4433212 66777 99999999877
No 185
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=95.73 E-value=0.019 Score=50.23 Aligned_cols=44 Identities=2% Similarity=-0.179 Sum_probs=30.4
Q ss_pred cccchhhcHHHHHHHHhc--CCCCceEEEEEec-chhhHHHHHhcCC
Q 037018 20 SSKTVKVKVKAVLVWLFM--LDSMWLQFLTAVA-YKTAFVADIYNNN 63 (663)
Q Consensus 20 ~~~G~~~~~~~i~~~L~~--~~~~~~~vi~i~G-GKTtla~~v~~~~ 63 (663)
.++|.+..++++.+.+.. .....+-+.|=.| |||++|+++.+..
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~ 51 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNG 51 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTT
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhC
Confidence 578999988888888754 2222566666666 9999999999933
No 186
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=95.42 E-value=0.012 Score=58.91 Aligned_cols=42 Identities=10% Similarity=-0.002 Sum_probs=28.7
Q ss_pred cccchhhcHHHHHHHHhc---------------CCCCceEEEEEec-chhhHHHHHhc
Q 037018 20 SSKTVKVKVKAVLVWLFM---------------LDSMWLQFLTAVA-YKTAFVADIYN 61 (663)
Q Consensus 20 ~~~G~~~~~~~i~~~L~~---------------~~~~~~~vi~i~G-GKTtla~~v~~ 61 (663)
.++|.+..++.+.+++.. .....+-+.|=.| |||++|+++.+
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~ 89 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAG 89 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHH
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 589999999888877642 1111234444444 99999998887
No 187
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.38 E-value=0.0047 Score=63.32 Aligned_cols=43 Identities=12% Similarity=-0.025 Sum_probs=32.7
Q ss_pred ccccchhhcHHHHHHHHhcCCCCceEEEEEec-chhhHHHHHhc
Q 037018 19 CSSKTVKVKVKAVLVWLFMLDSMWLQFLTAVA-YKTAFVADIYN 61 (663)
Q Consensus 19 ~~~~G~~~~~~~i~~~L~~~~~~~~~vi~i~G-GKTtla~~v~~ 61 (663)
..++|.+..++.+..++.......+-+.|-.| ||||+|+.+.+
T Consensus 37 ~~i~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~ 80 (353)
T 1sxj_D 37 DEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTK 80 (353)
T ss_dssp TTCCSCCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHH
T ss_pred HHhhCCHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999998876432333333333 99999999998
No 188
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=95.37 E-value=0.013 Score=59.32 Aligned_cols=41 Identities=5% Similarity=-0.149 Sum_probs=32.4
Q ss_pred ccccchhhcHHHHHHHHhcCCCCceEEEEEec----chhhHHHHHhc
Q 037018 19 CSSKTVKVKVKAVLVWLFMLDSMWLQFLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 19 ~~~~G~~~~~~~i~~~L~~~~~~~~~vi~i~G----GKTtla~~v~~ 61 (663)
..++|.+..++.+.+++.....+ .++-+.| ||||+|+++.+
T Consensus 26 ~~ivg~~~~~~~l~~~l~~~~~~--~~~L~~G~~G~GKT~la~~la~ 70 (324)
T 3u61_B 26 DECILPAFDKETFKSITSKGKIP--HIILHSPSPGTGKTTVAKALCH 70 (324)
T ss_dssp TTSCCCHHHHHHHHHHHHTTCCC--SEEEECSSTTSSHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHcCCCC--eEEEeeCcCCCCHHHHHHHHHH
Confidence 46999999999999999866542 3344444 99999999998
No 189
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=95.25 E-value=0.019 Score=53.05 Aligned_cols=111 Identities=12% Similarity=0.097 Sum_probs=63.2
Q ss_pred hHHhcCCCcccEEEecCC-cCc-----ccCccCCCCCCcCeEeccCCCCc-----cchhhhcccccccEeeccCCcccc-
Q 037018 365 ENFCKKFKHLRVLNLGSA-ILY-----QYPPGLENLFHLKYLKLNIPSLN-----CLPSLLCTLLNLQTLEMPASYIDH- 432 (663)
Q Consensus 365 ~~~~~~l~~Lr~L~L~~~-~l~-----~lp~~~~~l~~L~~L~L~~~~i~-----~lp~~i~~L~~L~~L~L~~~~l~~- 432 (663)
..++.+-+.|+.|+|+++ .+. .+-..+..-..|+.|+|++|.|. .+.+.+..-+.|++|+|++|.++.
T Consensus 34 ~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~ 113 (197)
T 1pgv_A 34 NRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPE 113 (197)
T ss_dssp HHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHH
T ss_pred HHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHH
Confidence 444466667777777764 554 23344555567777777777766 445555566677777777776543
Q ss_pred ----cchhhhcCcCCcEEEccCCCCC-C-------CCCCCcCCCCCCcEeeCcCCC
Q 037018 433 ----SPEGIWMMQKLMHLNFGSINLP-A-------PPKNYSSSLKNLIFISSLNPS 476 (663)
Q Consensus 433 ----lp~~l~~l~~L~~L~l~~~~~~-~-------~~~~~l~~l~~L~~L~l~~~~ 476 (663)
+-..+..-+.|++|+++ ++.. . .+...+..-+.|+.|++..+.
T Consensus 114 Ga~ala~aL~~N~tL~~L~L~-n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 114 LLARLLRSTLVTQSIVEFKAD-NQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HHHHHHHHTTTTCCCSEEECC-CCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred HHHHHHHHHhhCCceeEEECC-CCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 22334555667777776 3221 1 111223334566777665543
No 190
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=94.84 E-value=0.059 Score=55.39 Aligned_cols=40 Identities=10% Similarity=-0.143 Sum_probs=32.3
Q ss_pred cccchhhcHHHHHHHHhcCCCCceEEEEEec----chhhHHHHHhc
Q 037018 20 SSKTVKVKVKAVLVWLFMLDSMWLQFLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 20 ~~~G~~~~~~~i~~~L~~~~~~~~~vi~i~G----GKTtla~~v~~ 61 (663)
.++|++..++.+.+.+..... ...+-|+| ||||+|+.+.+
T Consensus 17 ~~vg~~~~~~~L~~~l~~~~~--~~~~ll~G~~G~GKT~la~~la~ 60 (373)
T 1jr3_A 17 DVVGQEHVLTALANGLSLGRI--HHAYLFSGTRGVGKTSIARLLAK 60 (373)
T ss_dssp TSCSCHHHHHHHHHHHHHTCC--CSEEEEESCTTSSHHHHHHHHHH
T ss_pred hccCcHHHHHHHHHHHHhCCC--CeEEEEECCCCCCHHHHHHHHHH
Confidence 599999999999999976543 23455666 99999999988
No 191
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=94.81 E-value=0.035 Score=51.17 Aligned_cols=59 Identities=20% Similarity=0.162 Sum_probs=28.5
Q ss_pred CCCCcCeEeccCC-CCc-----cchhhhcccccccEeeccCCcccc-----cchhhhcCcCCcEEEccCC
Q 037018 393 NLFHLKYLKLNIP-SLN-----CLPSLLCTLLNLQTLEMPASYIDH-----SPEGIWMMQKLMHLNFGSI 451 (663)
Q Consensus 393 ~l~~L~~L~L~~~-~i~-----~lp~~i~~L~~L~~L~L~~~~l~~-----lp~~l~~l~~L~~L~l~~~ 451 (663)
+-+.|+.|+|+++ .|. .+-+.+..-..|+.|+|++|.++. +...+..-+.|++|+++.|
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N 108 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESN 108 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSS
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCC
Confidence 3445555555553 443 233444444555555555554432 2233444455555555533
No 192
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=94.76 E-value=0.036 Score=48.55 Aligned_cols=44 Identities=7% Similarity=-0.161 Sum_probs=29.6
Q ss_pred cccchhhcHHHHHHHHhcCCC--CceEEEEEec-chhhHHHHHhcCC
Q 037018 20 SSKTVKVKVKAVLVWLFMLDS--MWLQFLTAVA-YKTAFVADIYNNN 63 (663)
Q Consensus 20 ~~~G~~~~~~~i~~~L~~~~~--~~~~vi~i~G-GKTtla~~v~~~~ 63 (663)
.++|....++++.+.+..-.. ..+-+.|=.| |||++|+++++..
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhC
Confidence 578999999999988854222 1333333333 9999999999843
No 193
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=94.73 E-value=0.082 Score=51.25 Aligned_cols=43 Identities=7% Similarity=-0.126 Sum_probs=29.4
Q ss_pred ccccchhhcHHHHHHHHhc---CCC------CceEEEEEec----chhhHHHHHhc
Q 037018 19 CSSKTVKVKVKAVLVWLFM---LDS------MWLQFLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 19 ~~~~G~~~~~~~i~~~L~~---~~~------~~~~vi~i~G----GKTtla~~v~~ 61 (663)
..++|.+..++++.+++.. ... ...+-|-++| ||||+|+++.+
T Consensus 6 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 6 KDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 3689999888888776532 110 1223355777 99999999999
No 194
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=94.52 E-value=0.068 Score=53.74 Aligned_cols=43 Identities=14% Similarity=-0.052 Sum_probs=31.1
Q ss_pred ccccchhhcHHHHHHHHhc-----CCCCceEEEEEec-chhhHHHHHhc
Q 037018 19 CSSKTVKVKVKAVLVWLFM-----LDSMWLQFLTAVA-YKTAFVADIYN 61 (663)
Q Consensus 19 ~~~~G~~~~~~~i~~~L~~-----~~~~~~~vi~i~G-GKTtla~~v~~ 61 (663)
..++|++..++++..++.. .....+-+.|=.| ||||+|+++.+
T Consensus 12 ~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~ 60 (324)
T 1hqc_A 12 DEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAH 60 (324)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHH
T ss_pred HHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999888863 1111344444444 99999999998
No 195
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=94.33 E-value=0.19 Score=49.03 Aligned_cols=43 Identities=23% Similarity=-0.062 Sum_probs=29.7
Q ss_pred ccccchhhcHHHHHH-------HHhcCCCCceEEEEEec----chhhHHHHHhc
Q 037018 19 CSSKTVKVKVKAVLV-------WLFMLDSMWLQFLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 19 ~~~~G~~~~~~~i~~-------~L~~~~~~~~~vi~i~G----GKTtla~~v~~ 61 (663)
..++|....++++.. .+.........-+-|+| ||||+|+++.+
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~ 86 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAE 86 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHH
Confidence 358888887777776 33322222455666777 99999999999
No 196
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=94.19 E-value=0.065 Score=54.02 Aligned_cols=34 Identities=24% Similarity=0.015 Sum_probs=20.7
Q ss_pred HHHHHHHHhcCCC--CceEEEEEec-chhhHHHHHhc
Q 037018 28 VKAVLVWLFMLDS--MWLQFLTAVA-YKTAFVADIYN 61 (663)
Q Consensus 28 ~~~i~~~L~~~~~--~~~~vi~i~G-GKTtla~~v~~ 61 (663)
...+..++..... ..+-+.|-.| ||||||+.+.+
T Consensus 23 ~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~ 59 (324)
T 1l8q_A 23 YEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGN 59 (324)
T ss_dssp HHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHH
T ss_pred HHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHH
Confidence 4445555444321 2344444444 99999999999
No 197
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=93.93 E-value=0.083 Score=45.21 Aligned_cols=53 Identities=26% Similarity=0.308 Sum_probs=37.2
Q ss_pred cEEEecCCcCc--ccCccCCCCCCcCeEeccCCCCccchh-hhcccccccEeeccCCc
Q 037018 375 RVLNLGSAILY--QYPPGLENLFHLKYLKLNIPSLNCLPS-LLCTLLNLQTLEMPASY 429 (663)
Q Consensus 375 r~L~L~~~~l~--~lp~~~~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~ 429 (663)
.+++.+++.++ .+|..+. .+|++|+|++|.|+.+|. .+..+++|+.|+|.+|.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 35677777776 7775442 367888888888887764 45667788888887773
No 198
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=93.70 E-value=0.14 Score=54.08 Aligned_cols=40 Identities=13% Similarity=-0.082 Sum_probs=30.7
Q ss_pred ccccchhhcH---HHHHHHHhcCCCCceEEEEEec----chhhHHHHHhc
Q 037018 19 CSSKTVKVKV---KAVLVWLFMLDSMWLQFLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 19 ~~~~G~~~~~---~~i~~~L~~~~~~~~~vi~i~G----GKTtla~~v~~ 61 (663)
..++|.+..+ +.+...+.... ...+-++| ||||+|+.+.+
T Consensus 26 ~~ivGq~~~~~~~~~L~~~i~~~~---~~~vLL~GppGtGKTtlAr~ia~ 72 (447)
T 3pvs_A 26 AQYIGQQHLLAAGKPLPRAIEAGH---LHSMILWGPPGTGKTTLAEVIAR 72 (447)
T ss_dssp TTCCSCHHHHSTTSHHHHHHHHTC---CCEEEEECSTTSSHHHHHHHHHH
T ss_pred HHhCCcHHHHhchHHHHHHHHcCC---CcEEEEECCCCCcHHHHHHHHHH
Confidence 3588988777 66777776653 35566777 99999999999
No 199
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.70 E-value=0.071 Score=57.64 Aligned_cols=43 Identities=16% Similarity=-0.028 Sum_probs=33.5
Q ss_pred ccccchhhcHHHHHHHHhcCC--------------CCceEEEEEec----chhhHHHHHhc
Q 037018 19 CSSKTVKVKVKAVLVWLFMLD--------------SMWLQFLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 19 ~~~~G~~~~~~~i~~~L~~~~--------------~~~~~vi~i~G----GKTtla~~v~~ 61 (663)
..++|++..++++.++|.... ....+.+-|+| ||||+|+++.+
T Consensus 39 ~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~ 99 (516)
T 1sxj_A 39 QQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQ 99 (516)
T ss_dssp GGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 469999999999999997511 01235666777 99999999999
No 200
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=93.10 E-value=0.39 Score=50.60 Aligned_cols=43 Identities=5% Similarity=-0.096 Sum_probs=30.8
Q ss_pred ccccchhhcHHHHHHHHhc---------CCCCceEEEEEec----chhhHHHHHhc
Q 037018 19 CSSKTVKVKVKAVLVWLFM---------LDSMWLQFLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 19 ~~~~G~~~~~~~i~~~L~~---------~~~~~~~vi~i~G----GKTtla~~v~~ 61 (663)
..++|.+..++.+.+.+.. ......+-|-++| |||++|+++.+
T Consensus 134 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~ 189 (444)
T 2zan_A 134 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVAT 189 (444)
T ss_dssp GGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999887731 0001224455666 99999999999
No 201
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=93.05 E-value=0.27 Score=50.17 Aligned_cols=43 Identities=5% Similarity=-0.062 Sum_probs=30.0
Q ss_pred ccccchhhcHHHHHHHHhc------------CCCCceEEEEEec-chhhHHHHHhc
Q 037018 19 CSSKTVKVKVKAVLVWLFM------------LDSMWLQFLTAVA-YKTAFVADIYN 61 (663)
Q Consensus 19 ~~~~G~~~~~~~i~~~L~~------------~~~~~~~vi~i~G-GKTtla~~v~~ 61 (663)
..++|.+..++.+.+.+.. .....+-+.|=.| |||++|+++.+
T Consensus 51 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~ 106 (355)
T 2qp9_X 51 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVAT 106 (355)
T ss_dssp GGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHH
Confidence 4689999999999987731 1111233333344 99999999999
No 202
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.91 E-value=0.1 Score=52.94 Aligned_cols=41 Identities=10% Similarity=-0.130 Sum_probs=31.7
Q ss_pred cccccchhhcHHHHHHHHhcCCCCceEEEEEec----chhhHHHHHhc
Q 037018 18 SCSSKTVKVKVKAVLVWLFMLDSMWLQFLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 18 ~~~~~G~~~~~~~i~~~L~~~~~~~~~vi~i~G----GKTtla~~v~~ 61 (663)
-..++|.+..++.+...+..+.-+. +.++| ||||+|+.+.+
T Consensus 24 ~~~~~g~~~~~~~L~~~i~~g~~~~---~ll~Gp~G~GKTtla~~la~ 68 (340)
T 1sxj_C 24 LDEVYGQNEVITTVRKFVDEGKLPH---LLFYGPPGTGKTSTIVALAR 68 (340)
T ss_dssp GGGCCSCHHHHHHHHHHHHTTCCCC---EEEECSSSSSHHHHHHHHHH
T ss_pred HHHhcCcHHHHHHHHHHHhcCCCce---EEEECCCCCCHHHHHHHHHH
Confidence 3468898888888888887654322 56666 99999999998
No 203
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=92.56 E-value=0.14 Score=49.54 Aligned_cols=46 Identities=13% Similarity=-0.056 Sum_probs=29.7
Q ss_pred CccccccchhhcHHHHHHHHhc---CC------CCceEEEEEec----chhhHHHHHhc
Q 037018 16 STSCSSKTVKVKVKAVLVWLFM---LD------SMWLQFLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 16 ~~~~~~~G~~~~~~~i~~~L~~---~~------~~~~~vi~i~G----GKTtla~~v~~ 61 (663)
..-..++|.+..++++.+.+.. .. ....+-+.|+| ||||+|+++.+
T Consensus 9 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~ 67 (257)
T 1lv7_A 9 TTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAG 67 (257)
T ss_dssp CCGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHH
Confidence 3445799998888877765431 10 00112255666 99999999998
No 204
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=92.53 E-value=0.23 Score=49.37 Aligned_cols=43 Identities=9% Similarity=-0.155 Sum_probs=31.2
Q ss_pred ccccchhhcHHHHHHHHhcC----------CCCceEEEEEec----chhhHHHHHhc
Q 037018 19 CSSKTVKVKVKAVLVWLFML----------DSMWLQFLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 19 ~~~~G~~~~~~~i~~~L~~~----------~~~~~~vi~i~G----GKTtla~~v~~ 61 (663)
..++|.+..++++.+++... .....+.|-++| ||||+|+++.+
T Consensus 15 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~ 71 (301)
T 3cf0_A 15 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIAN 71 (301)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHH
Confidence 36899999999988877531 011234456666 99999999999
No 205
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=92.29 E-value=0.15 Score=50.85 Aligned_cols=42 Identities=10% Similarity=-0.072 Sum_probs=32.4
Q ss_pred cccchhhcHHHHHHHHhcCC------CCceEEEEEec----chhhHHHHHhc
Q 037018 20 SSKTVKVKVKAVLVWLFMLD------SMWLQFLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 20 ~~~G~~~~~~~i~~~L~~~~------~~~~~vi~i~G----GKTtla~~v~~ 61 (663)
.++|.+..++.+...+.... ......+.++| ||||+|+.+.+
T Consensus 18 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~ 69 (311)
T 4fcw_A 18 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAA 69 (311)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHH
Confidence 57899999888888876531 11245778888 99999999998
No 206
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=92.24 E-value=0.86 Score=46.43 Aligned_cols=43 Identities=12% Similarity=-0.129 Sum_probs=28.8
Q ss_pred ccccchhhcHHHH---HHHHhcCCCCceEEEEEec----chhhHHHHHhcC
Q 037018 19 CSSKTVKVKVKAV---LVWLFMLDSMWLQFLTAVA----YKTAFVADIYNN 62 (663)
Q Consensus 19 ~~~~G~~~~~~~i---~~~L~~~~~~~~~vi~i~G----GKTtla~~v~~~ 62 (663)
..++|.+..++.+ ...+..... .-+.+-++| ||||+|+++.+.
T Consensus 44 ~~ivG~~~~~~~l~~l~~~~~~~~~-~~~~vLl~GppGtGKT~la~~la~~ 93 (368)
T 3uk6_A 44 QGMVGQLAARRAAGVVLEMIREGKI-AGRAVLIAGQPGTGKTAIAMGMAQA 93 (368)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTCC-TTCEEEEEESTTSSHHHHHHHHHHH
T ss_pred hhccChHHHHHHHHHHHHHHHcCCC-CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3699999887764 444444433 223444555 999999999983
No 207
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=92.22 E-value=0.46 Score=47.64 Aligned_cols=43 Identities=5% Similarity=-0.137 Sum_probs=31.3
Q ss_pred ccccchhhcHHHHHHHHhc---------CCCCceEEEEEec----chhhHHHHHhc
Q 037018 19 CSSKTVKVKVKAVLVWLFM---------LDSMWLQFLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 19 ~~~~G~~~~~~~i~~~L~~---------~~~~~~~vi~i~G----GKTtla~~v~~ 61 (663)
..++|.+..++++.+.+.. ......+-|-++| |||++|+++.+
T Consensus 18 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~ 73 (322)
T 3eie_A 18 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVAT 73 (322)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHH
T ss_pred HHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHH
Confidence 4689999999999988721 1111233456666 99999999999
No 208
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=92.01 E-value=0.17 Score=43.21 Aligned_cols=54 Identities=24% Similarity=0.281 Sum_probs=38.1
Q ss_pred EEEEeecCccc--cccccccccccCCCCceEEEEecccCCCCChhhhcCCCCCcEEEeecCCC
Q 037018 517 CLQLVHEGRMW--QLSRMVLSEYQFPPCLTQLSLSNTQLMEDPMPALEKLPHLEVLKLKQNSY 577 (663)
Q Consensus 517 ~L~l~~~~~l~--~lp~~~~~l~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~ 577 (663)
.++-++ ..++ .+|. .+ .++|+.|+|++|.++......|..+++|+.|+|.+|.+
T Consensus 12 ~v~Cs~-~~L~~~~vP~---~l---p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGR-RGLTWASLPT---AF---PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCS-SCCCTTTSCS---CC---CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCC-CCCccccCCC---CC---CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 445454 5666 7775 21 45788888888888776677778888888888887755
No 209
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=91.83 E-value=0.76 Score=46.03 Aligned_cols=43 Identities=5% Similarity=-0.096 Sum_probs=31.0
Q ss_pred ccccchhhcHHHHHHHHhc---------CCCCceEEEEEec----chhhHHHHHhc
Q 037018 19 CSSKTVKVKVKAVLVWLFM---------LDSMWLQFLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 19 ~~~~G~~~~~~~i~~~L~~---------~~~~~~~vi~i~G----GKTtla~~v~~ 61 (663)
..++|.+..++.+.+.+.. ......+-|-++| |||++|+++.+
T Consensus 12 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~ 67 (322)
T 1xwi_A 12 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVAT 67 (322)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHH
Confidence 4689999999988887731 1111234566777 99999999998
No 210
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=91.77 E-value=0.61 Score=48.15 Aligned_cols=43 Identities=9% Similarity=-0.048 Sum_probs=31.0
Q ss_pred ccccchhhcHHHHHHHHhcC----C-----CCceEEEEEec----chhhHHHHHhc
Q 037018 19 CSSKTVKVKVKAVLVWLFML----D-----SMWLQFLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 19 ~~~~G~~~~~~~i~~~L~~~----~-----~~~~~vi~i~G----GKTtla~~v~~ 61 (663)
..++|.+..++.+.+++... . ....+-|-|+| |||++|++|.+
T Consensus 115 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~ 170 (389)
T 3vfd_A 115 DDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAA 170 (389)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999888320 0 00123455666 99999999998
No 211
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=91.54 E-value=0.4 Score=48.89 Aligned_cols=42 Identities=12% Similarity=-0.104 Sum_probs=31.3
Q ss_pred ccccchhhcHHHHHHHHhc----------CCCCceEEEEEec----chhhHHHHHhc
Q 037018 19 CSSKTVKVKVKAVLVWLFM----------LDSMWLQFLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 19 ~~~~G~~~~~~~i~~~L~~----------~~~~~~~vi~i~G----GKTtla~~v~~ 61 (663)
..++|.+..++++.+.+.. ... ..+-|-++| ||||+|+++.+
T Consensus 84 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~-~~~~vLl~GppGtGKT~la~aia~ 139 (357)
T 3d8b_A 84 EDIAGVEFAKATIKEIVVWPMLRPDIFTGLRG-PPKGILLFGPPGTGKTLIGKCIAS 139 (357)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGS-CCSEEEEESSTTSSHHHHHHHHHH
T ss_pred HHhCChHHHHHHHHHHHHHHhhChHhHhhccC-CCceEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999988742 011 234456666 99999999998
No 212
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=91.53 E-value=0.1 Score=52.08 Aligned_cols=43 Identities=7% Similarity=-0.079 Sum_probs=31.0
Q ss_pred cccchhhcHHHHHHHHhcCC--CCceEEEEEec-chhhHHHHHhcC
Q 037018 20 SSKTVKVKVKAVLVWLFMLD--SMWLQFLTAVA-YKTAFVADIYNN 62 (663)
Q Consensus 20 ~~~G~~~~~~~i~~~L~~~~--~~~~~vi~i~G-GKTtla~~v~~~ 62 (663)
.++|....+.++.+.+..-. ...+-+.|=.| |||++|+++.+.
T Consensus 3 ~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~ 48 (304)
T 1ojl_A 3 HMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHAC 48 (304)
T ss_dssp CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHH
T ss_pred CcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHh
Confidence 58899999999988876522 22344444444 999999999983
No 213
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=90.70 E-value=0.63 Score=52.84 Aligned_cols=42 Identities=10% Similarity=-0.085 Sum_probs=33.9
Q ss_pred cccchhhcHHHHHHHHhcCCCCceEEEEEec-chhhHHHHHhc
Q 037018 20 SSKTVKVKVKAVLVWLFMLDSMWLQFLTAVA-YKTAFVADIYN 61 (663)
Q Consensus 20 ~~~G~~~~~~~i~~~L~~~~~~~~~vi~i~G-GKTtla~~v~~ 61 (663)
.++|++.+++++.+.|.......+-++|=.| ||||+|+.+.+
T Consensus 187 ~~iGr~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~ 229 (758)
T 1r6b_X 187 PLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAW 229 (758)
T ss_dssp CCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHH
T ss_pred CccCCHHHHHHHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHH
Confidence 5899999999999999876543455555555 99999999988
No 214
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=89.91 E-value=0.44 Score=43.67 Aligned_cols=51 Identities=16% Similarity=0.055 Sum_probs=32.3
Q ss_pred HHHHHHhhcCCcE-EEEEeCCCC----ChhhHHHHHhhCCCCCCCceEEEEEeCCC
Q 037018 129 TIILRDYLTNKKD-FIVLDDVFD----DREIWNDLEKFLPDNQNGSRVLILVTDPF 179 (663)
Q Consensus 129 ~~~l~~~L~~kr~-LlVLDdv~~----~~~~~~~l~~~~~~~~~gskIiiT~r~~~ 179 (663)
-...++.+...+| |||||++.. .....+.+...+...-..--||||.|...
T Consensus 109 l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap 164 (196)
T 1g5t_A 109 WQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCH 164 (196)
T ss_dssp HHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCC
T ss_pred HHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCc
Confidence 4667777766666 999999843 12233444444443445678999988763
No 215
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=89.60 E-value=0.3 Score=45.24 Aligned_cols=38 Identities=8% Similarity=0.068 Sum_probs=29.4
Q ss_pred hhhcHHHHHHHHhcCCCCceEEEEEec----chhhHHHHHhc
Q 037018 24 VKVKVKAVLVWLFMLDSMWLQFLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 24 ~~~~~~~i~~~L~~~~~~~~~vi~i~G----GKTtla~~v~~ 61 (663)
++..++++.+.+.......-.+|+|.| ||||+++.+..
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 3 LRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp HHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 556778888887764433567888888 99999999886
No 216
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=88.85 E-value=0.18 Score=53.69 Aligned_cols=42 Identities=12% Similarity=-0.027 Sum_probs=33.8
Q ss_pred cccchhhcHHHHHHHHhcCCCCceEEEEEec-chhhHHHHHhc
Q 037018 20 SSKTVKVKVKAVLVWLFMLDSMWLQFLTAVA-YKTAFVADIYN 61 (663)
Q Consensus 20 ~~~G~~~~~~~i~~~L~~~~~~~~~vi~i~G-GKTtla~~v~~ 61 (663)
.++|++.+++.+...|.......+-++|-.| ||||+|+.+.+
T Consensus 181 ~iiGr~~~i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~ 223 (468)
T 3pxg_A 181 PVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQ 223 (468)
T ss_dssp CCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHH
T ss_pred CccCcHHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999875443455555555 99999999988
No 217
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=88.15 E-value=0.24 Score=46.92 Aligned_cols=40 Identities=10% Similarity=-0.144 Sum_probs=25.5
Q ss_pred ccccch---hhcHHHHHHHHhcCCCCceEEEEEec----chhhHHHHHhc
Q 037018 19 CSSKTV---KVKVKAVLVWLFMLDSMWLQFLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 19 ~~~~G~---~~~~~~i~~~L~~~~~~~~~vi~i~G----GKTtla~~v~~ 61 (663)
..++|. +..++.+..+...... +.+-|+| ||||+|+++.+
T Consensus 28 ~~~~~~~~~~~~~~~l~~~~~~~~~---~~~ll~G~~G~GKT~la~~l~~ 74 (242)
T 3bos_A 28 TSYYPAAGNDELIGALKSAASGDGV---QAIYLWGPVKSGRTHLIHAACA 74 (242)
T ss_dssp TTSCC--CCHHHHHHHHHHHHTCSC---SEEEEECSTTSSHHHHHHHHHH
T ss_pred hhccCCCCCHHHHHHHHHHHhCCCC---CeEEEECCCCCCHHHHHHHHHH
Confidence 356763 3455556666554332 3455666 99999999998
No 218
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=86.83 E-value=2.1 Score=43.02 Aligned_cols=41 Identities=15% Similarity=0.157 Sum_probs=29.3
Q ss_pred CCcEEEEEeCCCC-ChhhHHHHHhhCCCCCCCceEEEEEeCC
Q 037018 138 NKKDFIVLDDVFD-DREIWNDLEKFLPDNQNGSRVLILVTDP 178 (663)
Q Consensus 138 ~kr~LlVLDdv~~-~~~~~~~l~~~~~~~~~gskIiiT~r~~ 178 (663)
+++-++|+|++.. .....+.+...+..-..+..+|++|..+
T Consensus 107 ~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~ 148 (334)
T 1a5t_A 107 GGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREP 148 (334)
T ss_dssp SSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCG
T ss_pred CCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCCh
Confidence 5677889999987 4566777877776555567777776544
No 219
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=85.62 E-value=1.4 Score=46.55 Aligned_cols=46 Identities=9% Similarity=-0.092 Sum_probs=30.1
Q ss_pred CccccccchhhcHHHHHHHHhc--C-------CCCceEEEEEec----chhhHHHHHhc
Q 037018 16 STSCSSKTVKVKVKAVLVWLFM--L-------DSMWLQFLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 16 ~~~~~~~G~~~~~~~i~~~L~~--~-------~~~~~~vi~i~G----GKTtla~~v~~ 61 (663)
..-..++|.++.++++.+.+.. . +....+-|-++| ||||||++|.+
T Consensus 13 ~~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~ 71 (476)
T 2ce7_A 13 VTFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAG 71 (476)
T ss_dssp CCGGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHH
T ss_pred CCHHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHH
Confidence 3444699999888888776532 1 000011245666 99999999999
No 220
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=85.35 E-value=0.63 Score=43.19 Aligned_cols=34 Identities=15% Similarity=0.010 Sum_probs=24.3
Q ss_pred cHHHHHHHHhcCCCCceEEEEEec----chhhHHHHHhc
Q 037018 27 KVKAVLVWLFMLDSMWLQFLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 27 ~~~~i~~~L~~~~~~~~~vi~i~G----GKTtla~~v~~ 61 (663)
-+++|.+.+..... +-.+|+|+| |||||++.+..
T Consensus 7 ~~~~~~~~~~~~~~-~g~~v~I~G~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 7 LCQGVLERLDPRQP-GRQLVALSGAPGSGKSTLSNPLAA 44 (208)
T ss_dssp HHHHHHHHSCTTCC-SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred HHHHHHHHHHhcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence 44555555554322 467889988 99999999988
No 221
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=84.41 E-value=2 Score=45.03 Aligned_cols=101 Identities=14% Similarity=0.150 Sum_probs=54.0
Q ss_pred HHHHHhc-CCCCceEEEEEec-chhhHHHHHhcCCCccccCCCCccc-cCCceeeccCCCcceEeCCCcchhHHHHHHHH
Q 037018 31 VLVWLFM-LDSMWLQFLTAVA-YKTAFVADIYNNNVDLSAMNPKLRV-PKRFINKAFPVAFPVDVNCACNAQLNHILDDI 107 (663)
Q Consensus 31 i~~~L~~-~~~~~~~vi~i~G-GKTtla~~v~~~~~~~~~~~~~~~~-~~~F~~~~~~~~~~v~vs~~~~~~~~~l~~~i 107 (663)
++..|.- ...++..++|=.| |||||++.+.+ .+ +.+-+.+++ +-+.+... ...++.+++
T Consensus 143 ~ID~l~pigkGQr~~Ifgg~G~GKT~L~~~i~~------------~~~~~~~~v~V~-----~~iGER~r-Ev~e~~~~~ 204 (482)
T 2ck3_D 143 VVDLLAPYAKGGKIGLFGGAGVGKTVLIMELIN------------NVAKAHGGYSVF-----AGVGERTR-EGNDLYHEM 204 (482)
T ss_dssp HHHHHSCEETTCEEEEEECTTSSHHHHHHHHHH------------HTTTTCSSEEEE-----EEESCCHH-HHHHHHHHH
T ss_pred EEecccccccCCeeeeecCCCCChHHHHHHHHH------------hhHhhCCCEEEE-----EECCCcch-HHHHHHHHh
Confidence 4444443 2233544444444 99999999887 33 233456677 77776654 155677777
Q ss_pred HHHhCCC--------------CCcchhhhh-HhhHHHHHHHHhh---cCCcEEEEEeCCCC
Q 037018 108 IKSVMPP--------------SRVNVIISE-DYKLKTIILRDYL---TNKKDFIVLDDVFD 150 (663)
Q Consensus 108 ~~~l~~~--------------~~~~~~~~~-~~~l~~~~l~~~L---~~kr~LlVLDdv~~ 150 (663)
...=..+ .+.+...-. .... ...+-+++ ++|.+||++||+..
T Consensus 205 ~~~~~l~~~~~~~rtvvV~~t~d~p~~~r~~~~~~-a~tiAEyfrd~~G~dVLll~DsitR 264 (482)
T 2ck3_D 205 IESGVINLKDATSKVALVYGQMNEPPGARARVALT-GLTVAEYFRDQEGQDVLLFIDNIFR 264 (482)
T ss_dssp HHHTSSCSSSSCCCEEEEEECTTSCHHHHHHHHHH-HHHHHHHHHHTTCSCEEEEEECTHH
T ss_pred hhccccccccCCceEEEEEECCCCCHHHHHHHHHH-HHHHHHHHHHhcCCcEEEEeccHHH
Confidence 6542111 011101111 1122 22233333 57999999999865
No 222
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=84.27 E-value=0.52 Score=54.22 Aligned_cols=42 Identities=14% Similarity=0.058 Sum_probs=35.4
Q ss_pred cccchhhcHHHHHHHHhcCCCCceEEEEEec-chhhHHHHHhc
Q 037018 20 SSKTVKVKVKAVLVWLFMLDSMWLQFLTAVA-YKTAFVADIYN 61 (663)
Q Consensus 20 ~~~G~~~~~~~i~~~L~~~~~~~~~vi~i~G-GKTtla~~v~~ 61 (663)
.++|++.+++++++.|.......+-++|=.| ||||+|+.+.+
T Consensus 171 ~viGr~~~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~ 213 (854)
T 1qvr_A 171 PVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQ 213 (854)
T ss_dssp CCCSCHHHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHH
Confidence 4899999999999999876544566677777 99999999988
No 223
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=83.94 E-value=0.53 Score=46.46 Aligned_cols=44 Identities=11% Similarity=-0.084 Sum_probs=31.7
Q ss_pred cccccchhhcHHHHHHHHhcC---------CCCceEEEEEec----chhhHHHHHhc
Q 037018 18 SCSSKTVKVKVKAVLVWLFML---------DSMWLQFLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 18 ~~~~~G~~~~~~~i~~~L~~~---------~~~~~~vi~i~G----GKTtla~~v~~ 61 (663)
-..++|.+..++.+.+++... -....+.+-++| ||||+|+++.+
T Consensus 20 ~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~ 76 (297)
T 3b9p_A 20 WTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVAT 76 (297)
T ss_dssp GGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHH
T ss_pred HHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHH
Confidence 346999999999999887431 001224456667 99999999999
No 224
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=83.81 E-value=0.43 Score=46.26 Aligned_cols=43 Identities=7% Similarity=-0.069 Sum_probs=29.6
Q ss_pred ccccchhhcHHHHHHHHhc-----------CC-CCceEEEEEec-chhhHHHHHhc
Q 037018 19 CSSKTVKVKVKAVLVWLFM-----------LD-SMWLQFLTAVA-YKTAFVADIYN 61 (663)
Q Consensus 19 ~~~~G~~~~~~~i~~~L~~-----------~~-~~~~~vi~i~G-GKTtla~~v~~ 61 (663)
..++|.+..++++.+.+.. .. ...+-+.|=.| ||||+|+++.+
T Consensus 11 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~ 66 (268)
T 2r62_A 11 KDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAG 66 (268)
T ss_dssp TTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHH
T ss_pred HHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHH
Confidence 4699999998888887652 11 11233333344 99999999999
No 225
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=83.72 E-value=0.61 Score=46.41 Aligned_cols=35 Identities=17% Similarity=0.043 Sum_probs=21.8
Q ss_pred cHHHHHHHHhcCCCCceEEEEEec----chhhHHHHHhc
Q 037018 27 KVKAVLVWLFMLDSMWLQFLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 27 ~~~~i~~~L~~~~~~~~~vi~i~G----GKTtla~~v~~ 61 (663)
..+.+.+++...+...-..+-++| |||+||+++++
T Consensus 136 ~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~ 174 (308)
T 2qgz_A 136 AFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAH 174 (308)
T ss_dssp HHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHH
Confidence 344555666543211123455666 99999999999
No 226
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=83.62 E-value=4.7 Score=38.10 Aligned_cols=48 Identities=10% Similarity=0.146 Sum_probs=28.8
Q ss_pred HHHHhhcCCcEEEEEeCCCC--ChhhHHHHHhhCC---CCCCCceEEEEEeCC
Q 037018 131 ILRDYLTNKKDFIVLDDVFD--DREIWNDLEKFLP---DNQNGSRVLILVTDP 178 (663)
Q Consensus 131 ~l~~~L~~kr~LlVLDdv~~--~~~~~~~l~~~~~---~~~~gskIiiT~r~~ 178 (663)
.+-+.|-.+.=+++||+.-. |......+...+. ....|.-||++|-+.
T Consensus 137 ~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~ 189 (237)
T 2cbz_A 137 SLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSM 189 (237)
T ss_dssp HHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCS
T ss_pred HHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhcCCCEEEEEecCh
Confidence 34455555666779999887 6666666666552 222365666665543
No 227
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=83.52 E-value=0.92 Score=48.30 Aligned_cols=42 Identities=7% Similarity=-0.118 Sum_probs=30.7
Q ss_pred ccccchhhcHHHHHHHHhcC-----------CCCceEEEEEec----chhhHHHHHhc
Q 037018 19 CSSKTVKVKVKAVLVWLFML-----------DSMWLQFLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 19 ~~~~G~~~~~~~i~~~L~~~-----------~~~~~~vi~i~G----GKTtla~~v~~ 61 (663)
..++|.+..++++.+++... .. ..+-|-|+| |||++|+++.+
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~-~~~~vLL~GppGtGKT~lAraia~ 260 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVK-PPRGILLYGPPGTGKTLIARAVAN 260 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCC-CCCEEEEECSTTSSHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCC-CCCcEEEECcCCCCHHHHHHHHHH
Confidence 35899999999998887532 11 122355666 99999999988
No 228
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=83.49 E-value=6.6 Score=36.86 Aligned_cols=46 Identities=13% Similarity=0.148 Sum_probs=28.3
Q ss_pred HHHHhhcCCcEEEEEeCCCC--ChhhHHHHHhh-CCCCCCCceEEEEEe
Q 037018 131 ILRDYLTNKKDFIVLDDVFD--DREIWNDLEKF-LPDNQNGSRVLILVT 176 (663)
Q Consensus 131 ~l~~~L~~kr~LlVLDdv~~--~~~~~~~l~~~-~~~~~~gskIiiT~r 176 (663)
.+-+.+-.+.=+++||+.-. |...-+.+... +.....|.-||++|.
T Consensus 140 ~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH 188 (229)
T 2pze_A 140 SLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTS 188 (229)
T ss_dssp HHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCTTTSEEEEECC
T ss_pred HHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhhCCCEEEEEcC
Confidence 34455656666889999887 66666666664 333223555555544
No 229
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=83.32 E-value=0.49 Score=53.73 Aligned_cols=42 Identities=12% Similarity=-0.027 Sum_probs=33.7
Q ss_pred cccchhhcHHHHHHHHhcCCCCceEEEEEec-chhhHHHHHhc
Q 037018 20 SSKTVKVKVKAVLVWLFMLDSMWLQFLTAVA-YKTAFVADIYN 61 (663)
Q Consensus 20 ~~~G~~~~~~~i~~~L~~~~~~~~~vi~i~G-GKTtla~~v~~ 61 (663)
.++|++.+++++...|.......+-++|-.| ||||+|+.+.+
T Consensus 181 ~iiG~~~~i~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~ 223 (758)
T 3pxi_A 181 PVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQ 223 (758)
T ss_dssp CCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHH
T ss_pred CccCchHHHHHHHHHHhCCCCCCeEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999875543454445555 99999999988
No 230
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=82.74 E-value=1 Score=44.26 Aligned_cols=20 Identities=25% Similarity=0.182 Sum_probs=18.1
Q ss_pred ceEEEEEec----chhhHHHHHhc
Q 037018 42 WLQFLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 42 ~~~vi~i~G----GKTtla~~v~~ 61 (663)
+..+|||+| ||||||+.+..
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~ 53 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYN 53 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 578999999 99999999887
No 231
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=82.56 E-value=0.67 Score=46.68 Aligned_cols=44 Identities=14% Similarity=-0.013 Sum_probs=33.1
Q ss_pred ccccccchhhcHHHHHHHHhcC---CCCceEEEEEec----chhhHHHHHhc
Q 037018 17 TSCSSKTVKVKVKAVLVWLFML---DSMWLQFLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 17 ~~~~~~G~~~~~~~i~~~L~~~---~~~~~~vi~i~G----GKTtla~~v~~ 61 (663)
.-..++|.+..++++..++... .. ....|-|+| ||||+|+++.+
T Consensus 27 ~~~~iiG~~~~~~~l~~~l~~~~~~~~-~~~~vll~G~~GtGKT~la~~ia~ 77 (338)
T 3pfi_A 27 NFDGYIGQESIKKNLNVFIAAAKKRNE-CLDHILFSGPAGLGKTTLANIISY 77 (338)
T ss_dssp SGGGCCSCHHHHHHHHHHHHHHHHTTS-CCCCEEEECSTTSSHHHHHHHHHH
T ss_pred CHHHhCChHHHHHHHHHHHHHHHhcCC-CCCeEEEECcCCCCHHHHHHHHHH
Confidence 3347999999999999988752 11 233455666 99999999988
No 232
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=82.41 E-value=0.74 Score=46.41 Aligned_cols=42 Identities=14% Similarity=-0.085 Sum_probs=30.2
Q ss_pred ccccchhhcHHHHHHHHhcC---CCCceEEEEEec----chhhHHHHHhc
Q 037018 19 CSSKTVKVKVKAVLVWLFML---DSMWLQFLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 19 ~~~~G~~~~~~~i~~~L~~~---~~~~~~vi~i~G----GKTtla~~v~~ 61 (663)
..++|.+..++.+...+... +. ....+.++| ||||||+.+.+
T Consensus 25 ~~~~g~~~~~~~l~~~i~~~~~~~~-~~~~~ll~Gp~G~GKTTLa~~ia~ 73 (334)
T 1in4_A 25 DEFIGQENVKKKLSLALEAAKMRGE-VLDHVLLAGPPGLGKTTLAHIIAS 73 (334)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHHTC-CCCCEEEESSTTSSHHHHHHHHHH
T ss_pred HHccCcHHHHHHHHHHHHHHHhcCC-CCCeEEEECCCCCcHHHHHHHHHH
Confidence 46788887777776666432 11 335577777 99999999999
No 233
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=82.38 E-value=0.78 Score=45.55 Aligned_cols=20 Identities=15% Similarity=0.047 Sum_probs=16.3
Q ss_pred ceEEEEEec----chhhHHHHHhc
Q 037018 42 WLQFLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 42 ~~~vi~i~G----GKTtla~~v~~ 61 (663)
+-+++-|+| ||||||.++..
T Consensus 122 ~gsviLI~GpPGsGKTtLAlqlA~ 145 (331)
T 2vhj_A 122 ASGMVIVTGKGNSGKTPLVHALGE 145 (331)
T ss_dssp ESEEEEEECSCSSSHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 345667888 99999999987
No 234
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=81.89 E-value=3 Score=43.88 Aligned_cols=101 Identities=12% Similarity=0.107 Sum_probs=56.0
Q ss_pred HHHHHhcC-CCCceEEEEEec-chhhHHHHHhcCCCccccCCCCccc-cCCceeeccCCCcceEeCCCcchhHHHHHHHH
Q 037018 31 VLVWLFML-DSMWLQFLTAVA-YKTAFVADIYNNNVDLSAMNPKLRV-PKRFINKAFPVAFPVDVNCACNAQLNHILDDI 107 (663)
Q Consensus 31 i~~~L~~~-~~~~~~vi~i~G-GKTtla~~v~~~~~~~~~~~~~~~~-~~~F~~~~~~~~~~v~vs~~~~~~~~~l~~~i 107 (663)
++..|.-- ..++..++|=.| |||+|++.+.+ .+ +.+-+.+++ +-+.+... ...++.+++
T Consensus 155 vID~l~pigkGqr~gIfgg~GvGKT~L~~~l~~------------~~a~~~~~v~V~-----~~iGER~r-Ev~e~~~~~ 216 (498)
T 1fx0_B 155 VVNLLAPYRRGGKIGLFGGAGVGKTVLIMELIN------------NIAKAHGGVSVF-----GGVGERTR-EGNDLYMEM 216 (498)
T ss_dssp THHHHSCCCTTCCEEEEECSSSSHHHHHHHHHH------------HTTTTCSSCEEE-----EEESCCSH-HHHHHHHHH
T ss_pred EeeeecccccCCeEEeecCCCCCchHHHHHHHH------------HHHhhCCCEEEE-----EEcccCcH-HHHHHHHhh
Confidence 34444432 234555555555 99999999888 33 234567778 77776654 155677777
Q ss_pred HHHhCCC---------------CCcchhhhh-HhhHHHHHHHHhh---cCCcEEEEEeCCCC
Q 037018 108 IKSVMPP---------------SRVNVIISE-DYKLKTIILRDYL---TNKKDFIVLDDVFD 150 (663)
Q Consensus 108 ~~~l~~~---------------~~~~~~~~~-~~~l~~~~l~~~L---~~kr~LlVLDdv~~ 150 (663)
...=..+ .+.+...-. .... ...+-+++ ++|.+|+++||+..
T Consensus 217 ~~~~~l~~~~l~~~rtvvV~~t~d~p~~~R~~~~~~-altiAEyfrd~~G~dVLl~~DsitR 277 (498)
T 1fx0_B 217 KESGVINEQNIAESKVALVYGQMNEPPGARMRVGLT-ALTMAEYFRDVNEQDVLLFIDNIFR 277 (498)
T ss_dssp HHTTSSCSSTTCCCCEEEEEECTTSCHHHHTTHHHH-HHHTHHHHTTTSCCEEEEEEECSHH
T ss_pred hcccccccccccccceEEEEeCCCCCHHHHHHHHHH-HHHHHHHHHHhcCCcEEEEeccHHH
Confidence 6531111 011101111 2222 23334444 46899999999865
No 235
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=81.77 E-value=0.75 Score=46.18 Aligned_cols=41 Identities=12% Similarity=-0.012 Sum_probs=33.8
Q ss_pred ccccchhhcHHHHHHHHhcCCCCceEEEEEec-chhhHHHHHhc
Q 037018 19 CSSKTVKVKVKAVLVWLFMLDSMWLQFLTAVA-YKTAFVADIYN 61 (663)
Q Consensus 19 ~~~~G~~~~~~~i~~~L~~~~~~~~~vi~i~G-GKTtla~~v~~ 61 (663)
..++|.+..++.+...+.... .+-+.|-.| |||++|+.+.+
T Consensus 27 ~~i~g~~~~~~~l~~~l~~~~--~vll~G~pGtGKT~la~~la~ 68 (331)
T 2r44_A 27 KVVVGQKYMINRLLIGICTGG--HILLEGVPGLAKTLSVNTLAK 68 (331)
T ss_dssp TTCCSCHHHHHHHHHHHHHTC--CEEEESCCCHHHHHHHHHHHH
T ss_pred cceeCcHHHHHHHHHHHHcCC--eEEEECCCCCcHHHHHHHHHH
Confidence 368999999999988887754 466666667 99999999998
No 236
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=81.23 E-value=2.5 Score=44.27 Aligned_cols=87 Identities=10% Similarity=0.146 Sum_probs=45.3
Q ss_pred EEEEec----chhhHHHHHhcCCCccccCCCCccccCCc-eeeccCCCcceEeCCCcchhHHHHHHHHHHHh--------
Q 037018 45 FLTAVA----YKTAFVADIYNNNVDLSAMNPKLRVPKRF-INKAFPVAFPVDVNCACNAQLNHILDDIIKSV-------- 111 (663)
Q Consensus 45 vi~i~G----GKTtla~~v~~~~~~~~~~~~~~~~~~~F-~~~~~~~~~~v~vs~~~~~~~~~l~~~i~~~l-------- 111 (663)
.++|+| ||||||+.+.+ .+..++ +.+++ +-+.+... ...++.+++...-
T Consensus 153 ~~~i~G~sGvGKTtL~~~l~~------------~~~~~~~~i~V~-----~~iGertt-ev~el~~~l~~~~~l~~tvvv 214 (473)
T 1sky_E 153 KIGLFGGAGVGKTVLIQELIH------------NIAQEHGGISVF-----AGVGERTR-EGNDLYHEMKDSGVISKTAMV 214 (473)
T ss_dssp EEEEECCSSSCHHHHHHHHHH------------HHHHHTCCCEEE-----EEESSCHH-HHHHHHHHHHHTSGGGGEEEE
T ss_pred EEEEECCCCCCccHHHHHHHh------------hhhhccCcEEEE-----eeeccCch-HHHHHHHHhhhcCCcceeEEE
Confidence 366667 99999999988 333322 34456 66665543 1445555554320
Q ss_pred -CCCCCcchhhhhHhhHHHHHHHHh---hcCCcEEEEEeCCCC
Q 037018 112 -MPPSRVNVIISEDYKLKTIILRDY---LTNKKDFIVLDDVFD 150 (663)
Q Consensus 112 -~~~~~~~~~~~~~~~l~~~~l~~~---L~~kr~LlVLDdv~~ 150 (663)
....+.+......... ...+.++ .++|.+|+++||+..
T Consensus 215 ~~~~~d~pg~r~~~~~~-~ltiAEyFrd~~G~~VLl~~D~itR 256 (473)
T 1sky_E 215 FGQMNEPPGARMRVALT-GLTMAEYFRDEQGQDGLLFIDNIFR 256 (473)
T ss_dssp EECTTSCHHHHHHHHHH-HHHHHHHHHHHSCCEEEEEEECTHH
T ss_pred EEcCCCCHHHHHHHHHH-HHHHHHHHHHhcCCcEEEEeccHHH
Confidence 0111112111111111 1122232 368999999999965
No 237
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=81.04 E-value=0.74 Score=45.52 Aligned_cols=43 Identities=12% Similarity=-0.023 Sum_probs=31.1
Q ss_pred ccccchhhcHHHHHHHHhc--------------CCCCceEEEEEec-chhhHHHHHhc
Q 037018 19 CSSKTVKVKVKAVLVWLFM--------------LDSMWLQFLTAVA-YKTAFVADIYN 61 (663)
Q Consensus 19 ~~~~G~~~~~~~i~~~L~~--------------~~~~~~~vi~i~G-GKTtla~~v~~ 61 (663)
..++|.+..++.+...+.. .....+-+.|=.| |||++|+++.+
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~ 72 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAK 72 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999888764 1111344444444 99999999998
No 238
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=80.75 E-value=2 Score=44.61 Aligned_cols=91 Identities=9% Similarity=0.171 Sum_probs=50.1
Q ss_pred CceEEEEEec-chhhHHHHHhcCCCccccCCCCccccCCce----eeccCCCcceEeCCCcchhHHHHHHHHHHHh-CC-
Q 037018 41 MWLQFLTAVA-YKTAFVADIYNNNVDLSAMNPKLRVPKRFI----NKAFPVAFPVDVNCACNAQLNHILDDIIKSV-MP- 113 (663)
Q Consensus 41 ~~~~vi~i~G-GKTtla~~v~~~~~~~~~~~~~~~~~~~F~----~~~~~~~~~v~vs~~~~~~~~~l~~~i~~~l-~~- 113 (663)
++..++|=.| |||||+..|.+.. . .+-+ .+++ +-+.+... ...++.+++...= ..
T Consensus 152 Qr~~Ifgg~G~GKt~L~~~Ia~~~----------~--~~~d~~~~~~V~-----~~iGeR~~-Ev~e~~~~~~~~g~~~r 213 (465)
T 3vr4_D 152 QKLPVFSGSGLPHKELAAQIARQA----------T--VLDSSDDFAVVF-----AAIGITFE-EAEFFMEDFRQTGAIDR 213 (465)
T ss_dssp CBCCEEECTTSCHHHHHHHHHHHC----------B--CSSCSSCEEEEE-----EEEEECHH-HHHHHHHHHHHHTGGGG
T ss_pred CEEEEeCCCCcChHHHHHHHHHHH----------H--hccCCCceEEEE-----EEecCCcH-HHHHHHHHHhhcCCccc
Confidence 4666666555 9999999999954 3 2223 5556 66665443 1556666655431 00
Q ss_pred -------CCCcchhhhhHhhHHHHHHHHhhc---CCcEEEEEeCCCC
Q 037018 114 -------PSRVNVIISEDYKLKTIILRDYLT---NKKDFIVLDDVFD 150 (663)
Q Consensus 114 -------~~~~~~~~~~~~~l~~~~l~~~L~---~kr~LlVLDdv~~ 150 (663)
.+............ ...+-++++ +|.+|+++||+-.
T Consensus 214 tvvV~atsd~p~~~r~~a~~~-a~tiAEyfrd~~G~~VLl~~DslTr 259 (465)
T 3vr4_D 214 SVMFMNLANDPAIERIATPRM-ALTAAEYLAYEKGMHVLVIMTDMTN 259 (465)
T ss_dssp EEEEEEETTSCHHHHHHHHHH-HHHHHHHHHHTTCCEEEEEEECHHH
T ss_pred eEEEEECCCCCHHHHHHHHHH-HHHHHHHHHHhcCCeEEEEEcChHH
Confidence 11111111112222 233445543 7999999999865
No 239
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=80.66 E-value=2.4 Score=48.74 Aligned_cols=42 Identities=10% Similarity=-0.075 Sum_probs=31.7
Q ss_pred cccchhhcHHHHHHHHhcC------CCCceEEEEEec----chhhHHHHHhc
Q 037018 20 SSKTVKVKVKAVLVWLFML------DSMWLQFLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 20 ~~~G~~~~~~~i~~~L~~~------~~~~~~vi~i~G----GKTtla~~v~~ 61 (663)
.++|.+..++.+...+... +......+-|+| |||++|+++.+
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~ 610 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAA 610 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHH
Confidence 4789999888888777542 111345677888 99999999988
No 240
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=79.72 E-value=4.6 Score=42.57 Aligned_cols=102 Identities=14% Similarity=0.106 Sum_probs=53.4
Q ss_pred CCCCceEEEEEec-chhhHH-HHHhcCCCccccCCCCccccCCce-eeccCCCcceEeCCCcchhHHHHHHHHHHHhC--
Q 037018 38 LDSMWLQFLTAVA-YKTAFV-ADIYNNNVDLSAMNPKLRVPKRFI-NKAFPVAFPVDVNCACNAQLNHILDDIIKSVM-- 112 (663)
Q Consensus 38 ~~~~~~~vi~i~G-GKTtla-~~v~~~~~~~~~~~~~~~~~~~F~-~~~~~~~~~v~vs~~~~~~~~~l~~~i~~~l~-- 112 (663)
...++..++|=.| |||||| ..|.| ... -+ .+++ +-+.+... .+.++.+++...=.
T Consensus 173 grGQR~~I~g~~g~GKT~Lal~~I~~------------~~~--~dv~~V~-----~~IGeR~~-Ev~e~~~~~~~~g~m~ 232 (515)
T 2r9v_A 173 GRGQRELIIGDRQTGKTAIAIDTIIN------------QKG--QGVYCIY-----VAIGQKKS-AIARIIDKLRQYGAME 232 (515)
T ss_dssp ETTCBEEEEEETTSSHHHHHHHHHHT------------TTT--TTEEEEE-----EEESCCHH-HHHHHHHHHHHTTGGG
T ss_pred ccCCEEEEEcCCCCCccHHHHHHHHH------------hhc--CCcEEEE-----EEcCCCcH-HHHHHHHHHHhCCCcc
Confidence 3334666666666 999994 68888 332 34 3456 66666554 15566666654211
Q ss_pred ------C-CCCcchhhhhHhhHHHHHHHHhh--cCCcEEEEEeCCCCChhhHHHHHh
Q 037018 113 ------P-PSRVNVIISEDYKLKTIILRDYL--TNKKDFIVLDDVFDDREIWNDLEK 160 (663)
Q Consensus 113 ------~-~~~~~~~~~~~~~l~~~~l~~~L--~~kr~LlVLDdv~~~~~~~~~l~~ 160 (663)
. .+............ ...+-+++ ++|.+|+++||+..-.+.+.++..
T Consensus 233 rtvvV~atad~p~~~r~~a~~~-a~tiAEyfrd~G~dVLli~DslTr~A~A~REisl 288 (515)
T 2r9v_A 233 YTTVVVASASDPASLQYIAPYA-GCAMGEYFAYSGRDALVVYDDLSKHAVAYRQLSL 288 (515)
T ss_dssp GEEEEEECTTSCHHHHHHHHHH-HHHHHHHHHTTTCEEEEEEETHHHHHHHHHHHHH
T ss_pred eeEEEEECCCCCHHHHHHHHHH-HHHHHHHHHHcCCcEEEEeccHHHHHHHHHHHhh
Confidence 0 11111111111111 12222333 579999999998753444454443
No 241
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=79.18 E-value=2.6 Score=43.86 Aligned_cols=93 Identities=13% Similarity=0.203 Sum_probs=50.7
Q ss_pred CCceEEEEEec-chhhHHHHHhcCCCccccCCCCcccc--------CCce-eeccCCCcceEeCCCcchhHHHHHHHHHH
Q 037018 40 SMWLQFLTAVA-YKTAFVADIYNNNVDLSAMNPKLRVP--------KRFI-NKAFPVAFPVDVNCACNAQLNHILDDIIK 109 (663)
Q Consensus 40 ~~~~~vi~i~G-GKTtla~~v~~~~~~~~~~~~~~~~~--------~~F~-~~~~~~~~~v~vs~~~~~~~~~l~~~i~~ 109 (663)
.++..++|=.| |||||+..|.+.. +.. ++=+ .+++ +-+.+... ...++.+++..
T Consensus 147 GQr~~Ifgg~G~GKt~L~~~Ia~~~----------~a~~~~~~~~~d~~~~~~V~-----~~iGeR~~-Ev~e~~~~l~~ 210 (464)
T 3gqb_B 147 GQKLPIFSGSGLPANEIAAQIARQA----------TVRPDLSGEGEKEEPFAVVF-----AAMGITQR-ELSYFIQEFER 210 (464)
T ss_dssp TCBCCEEEETTSCHHHHHHHHHHHC----------BCCHHHHCCCSTTCCEEEEE-----EEEEECHH-HHHHHHHHHHH
T ss_pred CCEEEEecCCCCCchHHHHHHHHHH----------HhcccccccccCCCceEEEE-----EEecCchH-HHHHHHHHhhh
Confidence 35677777666 9999999999855 331 1111 4555 55655443 15556666544
Q ss_pred Hh--C-------CCCCcchhhhh-HhhHHHHHHHHhhc---CCcEEEEEeCCCC
Q 037018 110 SV--M-------PPSRVNVIISE-DYKLKTIILRDYLT---NKKDFIVLDDVFD 150 (663)
Q Consensus 110 ~l--~-------~~~~~~~~~~~-~~~l~~~~l~~~L~---~kr~LlVLDdv~~ 150 (663)
.= . ..+... .... .... ...+-++++ +|.+|+++||+-.
T Consensus 211 ~g~~~rtvvv~~t~d~p~-~~r~~~~~~-a~tiAEyfrd~~G~~VLl~~DdlTr 262 (464)
T 3gqb_B 211 TGALSRSVLFLNKADDPT-IERILTPRM-ALTVAEYLAFEHDYHVLVILTDMTN 262 (464)
T ss_dssp TSGGGGEEEEEEETTSCT-HHHHHHHHH-HHHHHHHHHHTTCCEEEEEEETHHH
T ss_pred cccccceEEEEECCCCCH-HHHHHHHHH-HHHHHHHHHHhcCCeEEEEEcChHH
Confidence 21 0 011111 1111 2222 333445543 7999999999865
No 242
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=78.79 E-value=2.1 Score=44.57 Aligned_cols=44 Identities=5% Similarity=-0.112 Sum_probs=30.2
Q ss_pred cccccchhhcHHHHHHHHhc---C-------CCCceEEEEEec----chhhHHHHHhc
Q 037018 18 SCSSKTVKVKVKAVLVWLFM---L-------DSMWLQFLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 18 ~~~~~G~~~~~~~i~~~L~~---~-------~~~~~~vi~i~G----GKTtla~~v~~ 61 (663)
-..+.|.++.+++|.+.+.. . +....+-|=++| |||++|++|.+
T Consensus 180 ~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~ 237 (434)
T 4b4t_M 180 YSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAA 237 (434)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHH
T ss_pred hHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHH
Confidence 34688999999998876531 1 111233444566 99999999999
No 243
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=78.76 E-value=0.92 Score=43.55 Aligned_cols=20 Identities=15% Similarity=0.044 Sum_probs=17.9
Q ss_pred ceEEEEEec----chhhHHHHHhc
Q 037018 42 WLQFLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 42 ~~~vi~i~G----GKTtla~~v~~ 61 (663)
...+|+|.| ||||+|+.+..
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 567899999 99999999987
No 244
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=78.74 E-value=1 Score=48.02 Aligned_cols=41 Identities=7% Similarity=-0.059 Sum_probs=34.2
Q ss_pred ccccchhhcHHHHHHHHhcCCCCceEEEEEec-chhhHHHHHhc
Q 037018 19 CSSKTVKVKVKAVLVWLFMLDSMWLQFLTAVA-YKTAFVADIYN 61 (663)
Q Consensus 19 ~~~~G~~~~~~~i~~~L~~~~~~~~~vi~i~G-GKTtla~~v~~ 61 (663)
..++|.+..++.+...+.... .+-+.|-.| |||+||+++.+
T Consensus 22 ~~ivGq~~~i~~l~~al~~~~--~VLL~GpPGtGKT~LAraLa~ 63 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALSGE--SVFLLGPPGIAKSLIARRLKF 63 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHHTC--EEEEECCSSSSHHHHHHHGGG
T ss_pred hhhHHHHHHHHHHHHHHhcCC--eeEeecCchHHHHHHHHHHHH
Confidence 468999999998888887665 567777777 99999999999
No 245
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=78.73 E-value=1 Score=45.49 Aligned_cols=45 Identities=9% Similarity=-0.186 Sum_probs=29.2
Q ss_pred cccccchhhcHHHHHHHHhcCCCCceEEEEEec-chhhHHHHHhcC
Q 037018 18 SCSSKTVKVKVKAVLVWLFMLDSMWLQFLTAVA-YKTAFVADIYNN 62 (663)
Q Consensus 18 ~~~~~G~~~~~~~i~~~L~~~~~~~~~vi~i~G-GKTtla~~v~~~ 62 (663)
-..++|.+..++.+...+.......+-+.|=.| |||++|+++.+.
T Consensus 23 f~~i~G~~~~~~~l~~~~~~~~~~~vLl~G~~GtGKT~la~~la~~ 68 (350)
T 1g8p_A 23 FSAIVGQEDMKLALLLTAVDPGIGGVLVFGDRGTGKSTAVRALAAL 68 (350)
T ss_dssp GGGSCSCHHHHHHHHHHHHCGGGCCEEEECCGGGCTTHHHHHHHHH
T ss_pred chhccChHHHHHHHHHHhhCCCCceEEEECCCCccHHHHHHHHHHh
Confidence 346899988666554444432222455555555 999999999983
No 246
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=78.62 E-value=9 Score=36.80 Aligned_cols=46 Identities=11% Similarity=0.303 Sum_probs=26.0
Q ss_pred HHHHHhhcCCcEEEEEeCCCC--ChhhHHHHHhhCCCCCCCceEEEEEeC
Q 037018 130 IILRDYLTNKKDFIVLDDVFD--DREIWNDLEKFLPDNQNGSRVLILVTD 177 (663)
Q Consensus 130 ~~l~~~L~~kr~LlVLDdv~~--~~~~~~~l~~~~~~~~~gskIiiT~r~ 177 (663)
-.+-+.|-.+.=+++||.--. |...-+.+...+..... -||++|.+
T Consensus 137 v~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~--tviivtHd 184 (263)
T 2pjz_A 137 VRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGK--EGILVTHE 184 (263)
T ss_dssp HHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSCS--EEEEEESC
T ss_pred HHHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhcC--cEEEEEcC
Confidence 345556666677889999887 55544444444332222 45555443
No 247
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=77.75 E-value=0.72 Score=46.93 Aligned_cols=23 Identities=22% Similarity=0.301 Sum_probs=15.5
Q ss_pred cCCcEEEEEeCCCCChhhHHHHH
Q 037018 137 TNKKDFIVLDDVFDDREIWNDLE 159 (663)
Q Consensus 137 ~~kr~LlVLDdv~~~~~~~~~l~ 159 (663)
++|.+||++||+..-.....++.
T Consensus 259 ~G~dVLil~DslTR~A~A~revs 281 (422)
T 3ice_A 259 HKKDVIILLDSITRLARAYNTVV 281 (422)
T ss_dssp TSCEEEEEEECHHHHHHHHHHHS
T ss_pred cCCCEEEEEeCchHHHHHHHHHH
Confidence 58999999999865233333333
No 248
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=77.72 E-value=2.1 Score=42.09 Aligned_cols=19 Identities=11% Similarity=-0.043 Sum_probs=15.6
Q ss_pred eEEEEEec----chhhHHHHHhc
Q 037018 43 LQFLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 43 ~~vi~i~G----GKTtla~~v~~ 61 (663)
.+.+-++| |||+||++|.+
T Consensus 36 p~~lLl~GppGtGKT~la~aiA~ 58 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCELVFR 58 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 34566667 99999999999
No 249
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=77.34 E-value=4.5 Score=40.20 Aligned_cols=89 Identities=10% Similarity=0.076 Sum_probs=49.7
Q ss_pred ceEEEEEec----chhhHHHHHhcCCCccccCCCCccccC---------Cc-----eeeccCCCcceEeCCCcchhHHHH
Q 037018 42 WLQFLTAVA----YKTAFVADIYNNNVDLSAMNPKLRVPK---------RF-----INKAFPVAFPVDVNCACNAQLNHI 103 (663)
Q Consensus 42 ~~~vi~i~G----GKTtla~~v~~~~~~~~~~~~~~~~~~---------~F-----~~~~~~~~~~v~vs~~~~~~~~~l 103 (663)
.-+++-|+| ||||||..+..+. .... .. ...+| +.....++ ..++
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~~----------~l~~~~~~~~~~~~~gg~~~~~v~y-----i~~e~~~~--~~~l 159 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVNL----------QNPEFLFYDEEAVSKGEVAQPKAVY-----IDTEGTFR--PERI 159 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHT----------TCGGGEECCTTTSCTTTTSSEEEEE-----EESSSCCC--HHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH----------hccccccccccccccCCCCCceEEE-----EECCCCCC--HHHH
Confidence 346788888 9999999987632 1111 11 46778 88777777 6665
Q ss_pred HHHHHHHhCCCCC----------cchhhhhHhhHHHHHHHHhhcC--CcEEEEEeCCCC
Q 037018 104 LDDIIKSVMPPSR----------VNVIISEDYKLKTIILRDYLTN--KKDFIVLDDVFD 150 (663)
Q Consensus 104 ~~~i~~~l~~~~~----------~~~~~~~~~~l~~~~l~~~L~~--kr~LlVLDdv~~ 150 (663)
.+. ++.++.+.. ....+. ..++ ...+.+.++. +--+||+|.+-.
T Consensus 160 ~~~-~~~~g~~~~~~~~~l~~~~~~~~~~-~~~~-l~~l~~~~~~~~~~~lvVIDsl~~ 215 (322)
T 2i1q_A 160 MQM-AEHAGIDGQTVLDNTFVARAYNSDM-QMLF-AEKIEDLIQEGNNIKLVVIDSLTS 215 (322)
T ss_dssp HHH-HHHHTCCHHHHHHTEEEEECSSHHH-HHHH-HHTHHHHHHTTCEEEEEEEECSSH
T ss_pred HHH-HHHcCCCHHHHhcCEEEEeCCCHHH-HHHH-HHHHHHHHhhccCccEEEEECcHH
Confidence 543 444443210 000111 1223 3445555543 445889998764
No 250
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=77.26 E-value=7.9 Score=38.13 Aligned_cols=114 Identities=10% Similarity=0.049 Sum_probs=61.4
Q ss_pred chhhcHHHHHHHHhcCCCCceEEEEEec----chhhHHHHHhcCCCccccCCCCcccc-CCceeeccCCCcceEeCC-Cc
Q 037018 23 TVKVKVKAVLVWLFMLDSMWLQFLTAVA----YKTAFVADIYNNNVDLSAMNPKLRVP-KRFINKAFPVAFPVDVNC-AC 96 (663)
Q Consensus 23 G~~~~~~~i~~~L~~~~~~~~~vi~i~G----GKTtla~~v~~~~~~~~~~~~~~~~~-~~F~~~~~~~~~~v~vs~-~~ 96 (663)
|-++.++.+.+.+..+. ...+=++| ||||+|+.+.+... ... .+.+. .. +..+. ..
T Consensus 1 g~~~~~~~L~~~i~~~~---~~~~Lf~Gp~G~GKtt~a~~la~~~~---------~~~~~~~d~-~~-----l~~~~~~~ 62 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSE---GISILINGEDLSYPREVSLELPEYVE---------KFPPKASDV-LE-----IDPEGENI 62 (305)
T ss_dssp ---CHHHHHHHHHHTCS---SEEEEEECSSSSHHHHHHHHHHHHHH---------TSCCCTTTE-EE-----ECCSSSCB
T ss_pred ChHHHHHHHHHHHHCCC---CcEEEEECCCCCCHHHHHHHHHHhCc---------hhhccCCCE-EE-----EcCCcCCC
Confidence 44556677777776654 35666778 99999999977210 011 12221 22 21111 12
Q ss_pred chhHHHHHHHHHHHhCCCCCcchhhhhHhhHHHHHHHHhhcCCcEEEEEeCCCC-ChhhHHHHHhhCCCCCCCceEEEEE
Q 037018 97 NAQLNHILDDIIKSVMPPSRVNVIISEDYKLKTIILRDYLTNKKDFIVLDDVFD-DREIWNDLEKFLPDNQNGSRVLILV 175 (663)
Q Consensus 97 ~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~~l~~~L~~kr~LlVLDdv~~-~~~~~~~l~~~~~~~~~gskIiiT~ 175 (663)
. +..+ ++++..+... -..+++=++|+|++.. .....+.+...+-.-.+.+.+|++|
T Consensus 63 ~--id~i-r~li~~~~~~--------------------p~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t 119 (305)
T 2gno_A 63 G--IDDI-RTIKDFLNYS--------------------PELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNT 119 (305)
T ss_dssp C--HHHH-HHHHHHHTSC--------------------CSSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEE
T ss_pred C--HHHH-HHHHHHHhhc--------------------cccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEE
Confidence 2 2222 2233322211 0124556788999987 5667788887666555677777776
Q ss_pred eC
Q 037018 176 TD 177 (663)
Q Consensus 176 r~ 177 (663)
..
T Consensus 120 ~~ 121 (305)
T 2gno_A 120 RR 121 (305)
T ss_dssp SC
T ss_pred CC
Confidence 43
No 251
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=77.16 E-value=2.8 Score=44.24 Aligned_cols=32 Identities=19% Similarity=0.299 Sum_probs=23.4
Q ss_pred EEEEEeCCCC-ChhhHHHHHhhCCCCCCCceEEEEE
Q 037018 141 DFIVLDDVFD-DREIWNDLEKFLPDNQNGSRVLILV 175 (663)
Q Consensus 141 ~LlVLDdv~~-~~~~~~~l~~~~~~~~~gskIiiT~ 175 (663)
-+||+|++.. +...+..+...++ .+.+|++.-
T Consensus 130 ~~iiiDE~~~~~~~~~~~l~~~~~---~~~~~~~vG 162 (459)
T 3upu_A 130 RVLICDEVSMYDRKLFKILLSTIP---PWCTIIGIG 162 (459)
T ss_dssp SEEEESCGGGCCHHHHHHHHHHSC---TTCEEEEEE
T ss_pred CEEEEECchhCCHHHHHHHHHhcc---CCCEEEEEC
Confidence 4788999876 5777888887775 466777663
No 252
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=76.86 E-value=11 Score=36.81 Aligned_cols=46 Identities=13% Similarity=0.124 Sum_probs=27.9
Q ss_pred HHHHhhcCCcEEEEEeCCCC--ChhhHHHHHhhC-CCCCCCceEEEEEe
Q 037018 131 ILRDYLTNKKDFIVLDDVFD--DREIWNDLEKFL-PDNQNGSRVLILVT 176 (663)
Q Consensus 131 ~l~~~L~~kr~LlVLDdv~~--~~~~~~~l~~~~-~~~~~gskIiiT~r 176 (663)
.+-+.|-.+.=+++||+.-. |...-..+...+ .....|.-||++|.
T Consensus 169 ~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~~~~tviivtH 217 (290)
T 2bbs_A 169 SLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTS 217 (290)
T ss_dssp HHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCTTTSEEEEECC
T ss_pred HHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhhCCCEEEEEec
Confidence 34455556666889999887 666666666542 22233555665544
No 253
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=76.83 E-value=2.4 Score=44.28 Aligned_cols=92 Identities=13% Similarity=0.207 Sum_probs=50.7
Q ss_pred CceEEEEEec-chhhHHHHHhcCCCccccCCCCccccCC--ceeeccCCCcceEeCCCcchhHHHHHHHHHHHhCC----
Q 037018 41 MWLQFLTAVA-YKTAFVADIYNNNVDLSAMNPKLRVPKR--FINKAFPVAFPVDVNCACNAQLNHILDDIIKSVMP---- 113 (663)
Q Consensus 41 ~~~~vi~i~G-GKTtla~~v~~~~~~~~~~~~~~~~~~~--F~~~~~~~~~~v~vs~~~~~~~~~l~~~i~~~l~~---- 113 (663)
++..++|=.| |||||+..|.++. .+.+. =+.+++ +-+.+... ...++.+++...=..
T Consensus 153 Qr~~Ifgg~G~GKt~Ll~~Ia~~~----------~~n~~~~~~~~V~-----~~iGER~~-Ev~e~~~~~~~~g~m~rtv 216 (469)
T 2c61_A 153 QKLPIFSASGLPHNEIALQIARQA----------SVPGSESAFAVVF-----AAMGITNE-EAQYFMSDFEKTGALERAV 216 (469)
T ss_dssp CBCCEEECTTSCHHHHHHHHHHHC----------BCTTCSSCEEEEE-----EEEEECHH-HHHHHHHHHHHHSGGGGEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH----------hhccCCCCcEEEE-----EEccCCcH-HHHHHHHHHHhccCccceE
Confidence 4666666555 9999999999865 33211 135566 66665543 155666666653110
Q ss_pred -----CCCcchhhhh-HhhHHHHHHHHhhc---CCcEEEEEeCCCC
Q 037018 114 -----PSRVNVIISE-DYKLKTIILRDYLT---NKKDFIVLDDVFD 150 (663)
Q Consensus 114 -----~~~~~~~~~~-~~~l~~~~l~~~L~---~kr~LlVLDdv~~ 150 (663)
.+... ..-. .... ...+-++++ +|.+|+++||+..
T Consensus 217 vV~~tsd~p~-~~r~~~~~~-a~tiAEyfrdd~G~dVLl~~DsltR 260 (469)
T 2c61_A 217 VFLNLADDPA-VERIVTPRM-ALTAAEYLAYEHGMHVLVILTDITN 260 (469)
T ss_dssp EEEEETTSCH-HHHHHHHHH-HHHHHHHHHHHHCCEEEEEEECHHH
T ss_pred EEEECCCCCH-HHHHHHHHH-HHHHHHHHHHhcCCeEEEEEeCHHH
Confidence 11111 1111 2222 333445554 6999999999643
No 254
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=75.17 E-value=6.5 Score=42.36 Aligned_cols=41 Identities=15% Similarity=0.086 Sum_probs=29.4
Q ss_pred cccchhhcHHHHHHHHhc----CCCCceEEEEEec----chhhHHHHHhc
Q 037018 20 SSKTVKVKVKAVLVWLFM----LDSMWLQFLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 20 ~~~G~~~~~~~i~~~L~~----~~~~~~~vi~i~G----GKTtla~~v~~ 61 (663)
.++|.+.-.+.+.+.+.. ... +-.++.++| ||||||+.+.+
T Consensus 82 di~G~~~vk~~i~~~~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~ 130 (543)
T 3m6a_A 82 EHHGLEKVKERILEYLAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAK 130 (543)
T ss_dssp HCSSCHHHHHHHHHHHHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHH
Confidence 478888877777655432 111 345778888 99999999998
No 255
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=75.10 E-value=6 Score=37.10 Aligned_cols=20 Identities=10% Similarity=-0.066 Sum_probs=16.4
Q ss_pred eEEEEEec----chhhHHHHHhcC
Q 037018 43 LQFLTAVA----YKTAFVADIYNN 62 (663)
Q Consensus 43 ~~vi~i~G----GKTtla~~v~~~ 62 (663)
=.+++|+| ||||||+.+...
T Consensus 24 G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHH
Confidence 35777887 999999998873
No 256
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=75.05 E-value=3.4 Score=41.78 Aligned_cols=98 Identities=15% Similarity=0.029 Sum_probs=51.7
Q ss_pred HHHHHHHHhcCCCCceEEEEEec----chhhHHHHHhcCCCccccCCCCccccCCceeeccCCCcceEeCCCcchhHHHH
Q 037018 28 VKAVLVWLFMLDSMWLQFLTAVA----YKTAFVADIYNNNVDLSAMNPKLRVPKRFINKAFPVAFPVDVNCACNAQLNHI 103 (663)
Q Consensus 28 ~~~i~~~L~~~~~~~~~vi~i~G----GKTtla~~v~~~~~~~~~~~~~~~~~~~F~~~~~~~~~~v~vs~~~~~~~~~l 103 (663)
...+=..|....-+.-+++.|.| ||||||.++.... ...=..++| +.....++ ..
T Consensus 46 ~~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~------------~~~gg~Vly-----Id~E~s~~--~~-- 104 (356)
T 3hr8_A 46 SLAIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEA------------QKMGGVAAF-----IDAEHALD--PV-- 104 (356)
T ss_dssp CHHHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHH------------HHTTCCEEE-----EESSCCCC--HH--
T ss_pred CHHHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHH------------HhcCCeEEE-----Eecccccc--hH--
Confidence 44455555413323457888888 9999999998833 222234567 76666666 43
Q ss_pred HHHHHHHhCCCCCcch-hhhh-HhhHHHHHHHHhhc-CCcEEEEEeCCCC
Q 037018 104 LDDIIKSVMPPSRVNV-IISE-DYKLKTIILRDYLT-NKKDFIVLDDVFD 150 (663)
Q Consensus 104 ~~~i~~~l~~~~~~~~-~~~~-~~~l~~~~l~~~L~-~kr~LlVLDdv~~ 150 (663)
.+++++....... .... .++. ...+...++ .+.-++|+|.+-.
T Consensus 105 ---ra~rlgv~~~~l~i~~~~~~e~~-l~~~~~l~~~~~~dlvVIDSi~~ 150 (356)
T 3hr8_A 105 ---YAKNLGVDLKSLLISQPDHGEQA-LEIVDELVRSGVVDLIVVDSVAA 150 (356)
T ss_dssp ---HHHHHTCCGGGCEEECCSSHHHH-HHHHHHHHHTSCCSEEEEECTTT
T ss_pred ---HHHHcCCchhhhhhhhccCHHHH-HHHHHHHhhhcCCCeEEehHhhh
Confidence 3444543211000 0001 2333 333444333 4455889998765
No 257
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=75.05 E-value=1.3 Score=40.92 Aligned_cols=19 Identities=11% Similarity=0.076 Sum_probs=14.8
Q ss_pred eEEEEEec-chhhHHHHHhc
Q 037018 43 LQFLTAVA-YKTAFVADIYN 61 (663)
Q Consensus 43 ~~vi~i~G-GKTtla~~v~~ 61 (663)
+-+.|..| ||||+|+.+..
T Consensus 3 I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 3 IAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 34556666 99999999987
No 258
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=74.43 E-value=2.7 Score=41.89 Aligned_cols=21 Identities=5% Similarity=-0.164 Sum_probs=18.2
Q ss_pred CceEEEEEec----chhhHHHHHhc
Q 037018 41 MWLQFLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 41 ~~~~vi~i~G----GKTtla~~v~~ 61 (663)
....+|||.| ||||+|+.+..
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3567999999 99999999876
No 259
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=74.12 E-value=1.8 Score=41.38 Aligned_cols=42 Identities=10% Similarity=-0.041 Sum_probs=27.8
Q ss_pred ccccchhhcHHHHHHHHhcCC----------CCceEEEEEec----chhhHHHHHhc
Q 037018 19 CSSKTVKVKVKAVLVWLFMLD----------SMWLQFLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 19 ~~~~G~~~~~~~i~~~L~~~~----------~~~~~vi~i~G----GKTtla~~v~~ 61 (663)
..++|.+..++++.++...-. ..... +.|+| ||||||+++.+
T Consensus 16 ~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g-~ll~G~~G~GKTtl~~~i~~ 71 (254)
T 1ixz_A 16 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKG-VLLVGPPGVGKTHLARAVAG 71 (254)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSE-EEEECCTTSSHHHHHHHHHH
T ss_pred HHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCe-EEEECCCCCCHHHHHHHHHH
Confidence 368898877777765543210 00112 66777 99999999999
No 260
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=74.11 E-value=3.8 Score=41.39 Aligned_cols=100 Identities=16% Similarity=-0.015 Sum_probs=51.8
Q ss_pred hhcHHHHHHHHhcCCCCceEEEEEec----chhhHHHHHhcCCCccccCCCCccccCCceeeccCCCcceEeCCCcchhH
Q 037018 25 KVKVKAVLVWLFMLDSMWLQFLTAVA----YKTAFVADIYNNNVDLSAMNPKLRVPKRFINKAFPVAFPVDVNCACNAQL 100 (663)
Q Consensus 25 ~~~~~~i~~~L~~~~~~~~~vi~i~G----GKTtla~~v~~~~~~~~~~~~~~~~~~~F~~~~~~~~~~v~vs~~~~~~~ 100 (663)
..-...+-..|....-++-+++.|+| ||||||.++... +...=...+| +.....++ .
T Consensus 43 ~TG~~~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~------------~~~~g~~vly-----i~~E~~~~--~ 103 (349)
T 2zr9_A 43 PTGSISLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVAN------------AQAAGGIAAF-----IDAEHALD--P 103 (349)
T ss_dssp CCSCHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHH------------HHHTTCCEEE-----EESSCCCC--H
T ss_pred ccCCHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHH------------HHhCCCeEEE-----EECCCCcC--H
Confidence 33344444555412222346778888 999999998873 2222235667 77776666 4
Q ss_pred HHHHHHHHHHhCCCCCcc---hhhhhHhhHHHHHHHHhhcC-CcEEEEEeCCCC
Q 037018 101 NHILDDIIKSVMPPSRVN---VIISEDYKLKTIILRDYLTN-KKDFIVLDDVFD 150 (663)
Q Consensus 101 ~~l~~~i~~~l~~~~~~~---~~~~~~~~l~~~~l~~~L~~-kr~LlVLDdv~~ 150 (663)
. .++.++...... ...+ .++. ...++...+. +-=+||+|.+-.
T Consensus 104 ~-----~a~~lG~~~~~l~i~~~~~-~e~~-l~~~~~l~~~~~~~lIVIDsl~~ 150 (349)
T 2zr9_A 104 E-----YAKKLGVDTDSLLVSQPDT-GEQA-LEIADMLVRSGALDIIVIDSVAA 150 (349)
T ss_dssp H-----HHHHTTCCGGGCEEECCSS-HHHH-HHHHHHHHTTTCCSEEEEECGGG
T ss_pred H-----HHHHcCCCHHHeEEecCCC-HHHH-HHHHHHHHhcCCCCEEEEcChHh
Confidence 2 234444321100 0001 2333 3334433433 455899999865
No 261
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=72.49 E-value=1.7 Score=40.16 Aligned_cols=20 Identities=10% Similarity=-0.031 Sum_probs=17.3
Q ss_pred ceEEEEEec----chhhHHHHHhc
Q 037018 42 WLQFLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 42 ~~~vi~i~G----GKTtla~~v~~ 61 (663)
+-.+|||.| |||||++.+..
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 346888888 99999999988
No 262
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=72.47 E-value=1.9 Score=38.00 Aligned_cols=19 Identities=11% Similarity=0.046 Sum_probs=16.8
Q ss_pred eEEEEEec----chhhHHHHHhc
Q 037018 43 LQFLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 43 ~~vi~i~G----GKTtla~~v~~ 61 (663)
=.++++.| |||||++.+..
T Consensus 33 Ge~v~L~G~nGaGKTTLlr~l~g 55 (158)
T 1htw_A 33 AIMVYLNGDLGAGKTTLTRGMLQ 55 (158)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46888888 99999999988
No 263
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=72.26 E-value=1.8 Score=39.09 Aligned_cols=19 Identities=16% Similarity=0.111 Sum_probs=15.4
Q ss_pred EEEEEec----chhhHHHHHhcC
Q 037018 44 QFLTAVA----YKTAFVADIYNN 62 (663)
Q Consensus 44 ~vi~i~G----GKTtla~~v~~~ 62 (663)
.+|+|.| ||||+++.+...
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 4566666 999999999883
No 264
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=72.26 E-value=14 Score=36.99 Aligned_cols=53 Identities=15% Similarity=0.142 Sum_probs=33.9
Q ss_pred ceEEEEEec----chhhHHHHHhcCCCccccCCCCccccC----CceeeccCCCcceEeCCCcchhHHHHHHHHHHHhC
Q 037018 42 WLQFLTAVA----YKTAFVADIYNNNVDLSAMNPKLRVPK----RFINKAFPVAFPVDVNCACNAQLNHILDDIIKSVM 112 (663)
Q Consensus 42 ~~~vi~i~G----GKTtla~~v~~~~~~~~~~~~~~~~~~----~F~~~~~~~~~~v~vs~~~~~~~~~l~~~i~~~l~ 112 (663)
.-.++.|+| ||||||..+..+. .... .=...+| +.....++ ..++.+ ++..++
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~~----------~~~~~~gg~~~~vly-----i~~E~~~~--~~~l~~-~~~~~g 181 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVTA----------QLPGAGGYPGGKIIF-----IDTENTFR--PDRLRD-IADRFN 181 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHT----------TSCBTTTBCCCEEEE-----EESSSCCC--HHHHHH-HHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH----------hcccccCCCCCeEEE-----EECCCCCC--HHHHHH-HHHHcC
Confidence 457888888 9999999988743 1111 2235678 77777777 665543 334443
No 265
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=72.25 E-value=3.1 Score=47.05 Aligned_cols=43 Identities=12% Similarity=-0.098 Sum_probs=32.0
Q ss_pred ccccchhhcHHHHHHHHhcCC------CCceEEEEEec----chhhHHHHHhc
Q 037018 19 CSSKTVKVKVKAVLVWLFMLD------SMWLQFLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 19 ~~~~G~~~~~~~i~~~L~~~~------~~~~~vi~i~G----GKTtla~~v~~ 61 (663)
..++|.+..++.+...+.... ......+-++| |||++|+++.+
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~ 543 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAE 543 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHH
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHH
Confidence 358899998888888876422 12334577777 99999999988
No 266
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=72.09 E-value=7.1 Score=38.83 Aligned_cols=88 Identities=14% Similarity=0.114 Sum_probs=48.3
Q ss_pred eEEEEEec----chhhHHHHHhcCCCccccCCCCccccC----CceeeccCCCcceEeCCCcchhHHHHHHHHHHHhCCC
Q 037018 43 LQFLTAVA----YKTAFVADIYNNNVDLSAMNPKLRVPK----RFINKAFPVAFPVDVNCACNAQLNHILDDIIKSVMPP 114 (663)
Q Consensus 43 ~~vi~i~G----GKTtla~~v~~~~~~~~~~~~~~~~~~----~F~~~~~~~~~~v~vs~~~~~~~~~l~~~i~~~l~~~ 114 (663)
-.++.|+| ||||||..+..+. .... .=...+| +.....++ ..++.+ +++.++.+
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~~----------~~~~~~gg~~~~vly-----i~~e~~~~--~~~l~~-~~~~~g~~ 168 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVNV----------QLPPEKGGLSGKAVY-----IDTEGTFR--WERIEN-MAKALGLD 168 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHT----------TSCGGGTCCSCEEEE-----EESSSCCC--HHHHHH-HHHHTTCC
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHH----------hcccccCCCCCeEEE-----EECCCCCC--HHHHHH-HHHHhCCC
Confidence 35677777 9999999988733 1111 0235678 87777776 666553 34444432
Q ss_pred CC----------cchhhhhHhhHHHHHHHHhhc--CCcEEEEEeCCCC
Q 037018 115 SR----------VNVIISEDYKLKTIILRDYLT--NKKDFIVLDDVFD 150 (663)
Q Consensus 115 ~~----------~~~~~~~~~~l~~~~l~~~L~--~kr~LlVLDdv~~ 150 (663)
.. ....+. ..++ ...+.+.++ .+--+||+|.+-.
T Consensus 169 ~~~~~~~l~~~~~~~~~~-~~~~-l~~l~~~~~~~~~~~lvVIDsl~~ 214 (324)
T 2z43_A 169 IDNVMNNIYYIRAINTDH-QIAI-VDDLQELVSKDPSIKLIVVDSVTS 214 (324)
T ss_dssp HHHHHHTEEEEECCSHHH-HHHH-HHHHHHHHHHCTTEEEEEETTTTH
T ss_pred HHHHhccEEEEeCCCHHH-HHHH-HHHHHHHHHhccCCCEEEEeCcHH
Confidence 10 000111 1223 344445553 3456889998765
No 267
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=71.99 E-value=4.7 Score=41.34 Aligned_cols=43 Identities=7% Similarity=-0.001 Sum_probs=29.3
Q ss_pred ccccchhhcHHHHHHHHhc------------CC-CCceEEEEEec-chhhHHHHHhc
Q 037018 19 CSSKTVKVKVKAVLVWLFM------------LD-SMWLQFLTAVA-YKTAFVADIYN 61 (663)
Q Consensus 19 ~~~~G~~~~~~~i~~~L~~------------~~-~~~~~vi~i~G-GKTtla~~v~~ 61 (663)
..+.|.++.++++.+.+.- -. ..++-..|-.| |||.||++|.+
T Consensus 148 ~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~ 204 (405)
T 4b4t_J 148 DMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAH 204 (405)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHH
Confidence 4677999888888876632 11 11344444444 99999999999
No 268
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=71.91 E-value=6.6 Score=41.30 Aligned_cols=106 Identities=10% Similarity=0.076 Sum_probs=55.5
Q ss_pred HHHHHhc-CCCCceEEEEEec-chhhH-HHHHhcCCCccccCCCCccccCCce-eeccCCCcceEeCCCcchhHHHHHHH
Q 037018 31 VLVWLFM-LDSMWLQFLTAVA-YKTAF-VADIYNNNVDLSAMNPKLRVPKRFI-NKAFPVAFPVDVNCACNAQLNHILDD 106 (663)
Q Consensus 31 i~~~L~~-~~~~~~~vi~i~G-GKTtl-a~~v~~~~~~~~~~~~~~~~~~~F~-~~~~~~~~~v~vs~~~~~~~~~l~~~ 106 (663)
++..|.- ...++..++|=.| |||+| +..|.| ... -+ .+++ +-+.+... ...++.++
T Consensus 152 aID~l~PigrGQR~~Ifg~~g~GKT~Lal~~I~~------------~~~--~dv~~V~-----~~iGeR~~-Ev~~~~~~ 211 (502)
T 2qe7_A 152 AIDSMIPIGRGQRELIIGDRQTGKTTIAIDTIIN------------QKG--QDVICIY-----VAIGQKQS-TVAGVVET 211 (502)
T ss_dssp HHHHSSCCBTTCBCEEEECSSSCHHHHHHHHHHG------------GGS--CSEEEEE-----EEESCCHH-HHHHHHHH
T ss_pred ecccccccccCCEEEEECCCCCCchHHHHHHHHH------------hhc--CCcEEEE-----EECCCcch-HHHHHHHH
Confidence 3344433 3334666666666 99999 568888 332 34 3456 66676554 15566666
Q ss_pred HHHHhCC---------CCCcchhhhh----HhhHHHHHHHHhhcCCcEEEEEeCCCCChhhHHHHH
Q 037018 107 IIKSVMP---------PSRVNVIISE----DYKLKTIILRDYLTNKKDFIVLDDVFDDREIWNDLE 159 (663)
Q Consensus 107 i~~~l~~---------~~~~~~~~~~----~~~l~~~~l~~~L~~kr~LlVLDdv~~~~~~~~~l~ 159 (663)
+...=.. .+........ .-.. ++.+++ ++|.+|+++||+..-.+.+.++.
T Consensus 212 ~~~~g~m~~tvvV~atad~p~~~r~~a~~~a~ti-AEyfrd--~G~dVLl~~Dsltr~A~A~REis 274 (502)
T 2qe7_A 212 LRQHDALDYTIVVTASASEPAPLLYLAPYAGCAM-GEYFMY--KGKHALVVYDDLSKQAAAYRELS 274 (502)
T ss_dssp HHHTTCSTTEEEEEECTTSCHHHHHHHHHHHHHH-HHHHHT--TTCEEEEEEECHHHHHHHHHHHH
T ss_pred HhhCCCcceeEEEEECCCCCHHHHHHHHHHHHHH-HHHHHH--cCCcEEEEEecHHHHHHHHHHHH
Confidence 6552111 1111111111 1122 333333 58999999999865344444444
No 269
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=71.66 E-value=1 Score=42.33 Aligned_cols=49 Identities=24% Similarity=0.199 Sum_probs=29.6
Q ss_pred hhHHHHHHHHhhcCCcE-EEEEeCCCC-ChhhHHHHHhhCCCCCCCceEEEEEeC
Q 037018 125 YKLKTIILRDYLTNKKD-FIVLDDVFD-DREIWNDLEKFLPDNQNGSRVLILVTD 177 (663)
Q Consensus 125 ~~l~~~~l~~~L~~kr~-LlVLDdv~~-~~~~~~~l~~~~~~~~~gskIiiT~r~ 177 (663)
.++ ...+.+.+.+.++ +||+|.+-. ..+..+.+.. +.+ .|-.||+|-++
T Consensus 75 ~~i-~~~i~~~~~~~~~dvViIDEaQ~l~~~~ve~l~~-L~~--~gi~Vil~Gl~ 125 (223)
T 2b8t_A 75 PEI-LNYIMSNSFNDETKVIGIDEVQFFDDRICEVANI-LAE--NGFVVIISGLD 125 (223)
T ss_dssp HHH-HHHHHSTTSCTTCCEEEECSGGGSCTHHHHHHHH-HHH--TTCEEEEECCS
T ss_pred HHH-HHHHHHHhhCCCCCEEEEecCccCcHHHHHHHHH-HHh--CCCeEEEEecc
Confidence 345 5556665655555 999999875 3445454543 222 27788888663
No 270
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=71.30 E-value=1.7 Score=37.91 Aligned_cols=20 Identities=15% Similarity=0.152 Sum_probs=16.2
Q ss_pred EEEEEec----chhhHHHHHhcCC
Q 037018 44 QFLTAVA----YKTAFVADIYNNN 63 (663)
Q Consensus 44 ~vi~i~G----GKTtla~~v~~~~ 63 (663)
..++|+| |||||++.+++..
T Consensus 37 ~~~~l~G~~G~GKTtL~~~i~~~~ 60 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLLQAWVAQA 60 (149)
T ss_dssp SEEEEESSSTTTTCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 4566777 9999999999933
No 271
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=71.03 E-value=1.6 Score=42.14 Aligned_cols=44 Identities=9% Similarity=-0.133 Sum_probs=28.6
Q ss_pred cccchhhcHHHHHHHHhcC--CCCceEEEEEec-chhhHHHHHhcCC
Q 037018 20 SSKTVKVKVKAVLVWLFML--DSMWLQFLTAVA-YKTAFVADIYNNN 63 (663)
Q Consensus 20 ~~~G~~~~~~~i~~~L~~~--~~~~~~vi~i~G-GKTtla~~v~~~~ 63 (663)
.++|.+..+.++.+.+..- ....+-+.|=.| |||++|+.+.+..
T Consensus 7 ~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~ 53 (265)
T 2bjv_A 7 NLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLS 53 (265)
T ss_dssp ---CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTS
T ss_pred cceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhc
Confidence 4789999888888776542 112344444444 9999999999844
No 272
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=70.80 E-value=2.2 Score=39.29 Aligned_cols=21 Identities=10% Similarity=0.055 Sum_probs=17.8
Q ss_pred ceEEEEEec----chhhHHHHHhcC
Q 037018 42 WLQFLTAVA----YKTAFVADIYNN 62 (663)
Q Consensus 42 ~~~vi~i~G----GKTtla~~v~~~ 62 (663)
...+|+|.| ||||+|+.+...
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 457888888 999999999883
No 273
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=70.74 E-value=2.1 Score=42.52 Aligned_cols=20 Identities=5% Similarity=-0.124 Sum_probs=18.0
Q ss_pred ceEEEEEec----chhhHHHHHhc
Q 037018 42 WLQFLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 42 ~~~vi~i~G----GKTtla~~v~~ 61 (663)
+-.+|||+| |||||++.+..
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCchHHHHHHHHHh
Confidence 567999999 99999999987
No 274
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=70.54 E-value=2.1 Score=38.18 Aligned_cols=20 Identities=5% Similarity=-0.205 Sum_probs=15.0
Q ss_pred HHHHhhcCCcEEEEEeCCCC
Q 037018 131 ILRDYLTNKKDFIVLDDVFD 150 (663)
Q Consensus 131 ~l~~~L~~kr~LlVLDdv~~ 150 (663)
.+-+.+..+.-+++||.-..
T Consensus 93 ~iAral~~~p~~lllDEPt~ 112 (171)
T 4gp7_A 93 EMAKDYHCFPVAVVFNLPEK 112 (171)
T ss_dssp HHHHHTTCEEEEEEECCCHH
T ss_pred HHHHHcCCcEEEEEEeCCHH
Confidence 45566777888999998765
No 275
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=70.48 E-value=1.9 Score=38.05 Aligned_cols=32 Identities=22% Similarity=0.368 Sum_probs=19.1
Q ss_pred HHHHhh-cCCcEEEEEeCCCCChhhHHHHHhhCC
Q 037018 131 ILRDYL-TNKKDFIVLDDVFDDREIWNDLEKFLP 163 (663)
Q Consensus 131 ~l~~~L-~~kr~LlVLDdv~~~~~~~~~l~~~~~ 163 (663)
.+.+.+ ....-.+|+|++.. ..+++.+.....
T Consensus 68 ~~~~~l~~~~~~~vi~dg~~~-~~~~~~l~~~~~ 100 (179)
T 3lw7_A 68 LCVEELGTSNHDLVVFDGVRS-LAEVEEFKRLLG 100 (179)
T ss_dssp HHHHHHCSCCCSCEEEECCCC-HHHHHHHHHHHC
T ss_pred HHHHHHHhcCCCeEEEeCCCC-HHHHHHHHHHhC
Confidence 344445 13344578899966 666666665443
No 276
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=70.48 E-value=7.9 Score=35.56 Aligned_cols=19 Identities=11% Similarity=-0.158 Sum_probs=15.9
Q ss_pred eEEEEEec----chhhHHHHHhc
Q 037018 43 LQFLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 43 ~~vi~i~G----GKTtla~~v~~ 61 (663)
-.++.|+| ||||||..+..
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 35778888 99999999876
No 277
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=70.47 E-value=3.9 Score=41.11 Aligned_cols=40 Identities=13% Similarity=0.072 Sum_probs=27.6
Q ss_pred cchhhcHHHHHHHHhcC-CCCceEEEEEec----chhhHHHHHhc
Q 037018 22 KTVKVKVKAVLVWLFML-DSMWLQFLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 22 ~G~~~~~~~i~~~L~~~-~~~~~~vi~i~G----GKTtla~~v~~ 61 (663)
++.+..++++.+.+... .......|.++| ||||+++.+..
T Consensus 2 ~~~~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 2 VDTHKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp CCHHHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHH
Confidence 56677778888777532 111345566666 99999999888
No 278
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=70.25 E-value=5.6 Score=44.92 Aligned_cols=42 Identities=10% Similarity=-0.066 Sum_probs=30.7
Q ss_pred cccchhhcHHHHHHHHhcC------CCCceEEEEEec----chhhHHHHHhc
Q 037018 20 SSKTVKVKVKAVLVWLFML------DSMWLQFLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 20 ~~~G~~~~~~~i~~~L~~~------~~~~~~vi~i~G----GKTtla~~v~~ 61 (663)
.++|.+..++.+...+... .......+-++| |||++|+.+.+
T Consensus 459 ~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~ 510 (758)
T 1r6b_X 459 LVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSK 510 (758)
T ss_dssp TSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHH
Confidence 5789988888888777531 111344566777 99999999998
No 279
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=70.00 E-value=3.9 Score=41.38 Aligned_cols=57 Identities=12% Similarity=0.022 Sum_probs=34.1
Q ss_pred hhhcHHHHHHHHhcCCCCceEEEEEec----chhhHHHHHhcCCCccccCCCCccccCCceeeccCCCcceEeCCCcc
Q 037018 24 VKVKVKAVLVWLFMLDSMWLQFLTAVA----YKTAFVADIYNNNVDLSAMNPKLRVPKRFINKAFPVAFPVDVNCACN 97 (663)
Q Consensus 24 ~~~~~~~i~~~L~~~~~~~~~vi~i~G----GKTtla~~v~~~~~~~~~~~~~~~~~~~F~~~~~~~~~~v~vs~~~~ 97 (663)
...-...+-.+|....-+.-+++-|.| ||||||.++... +...=..++| +.....++
T Consensus 44 i~TG~~~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~------------~~~~g~~vly-----id~E~s~~ 104 (356)
T 1u94_A 44 ISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAA------------AQREGKTCAF-----IDAEHALD 104 (356)
T ss_dssp ECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHH------------HHHTTCCEEE-----EESSCCCC
T ss_pred ccCCCHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHH------------HHHCCCeEEE-----EeCCCCcc
Confidence 333344554555312222345778888 999999998873 3222235677 77777766
No 280
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=69.90 E-value=4.6 Score=42.57 Aligned_cols=96 Identities=10% Similarity=0.114 Sum_probs=50.2
Q ss_pred CceEEEEEec-chhhH-HHHHhcCCCccccCCCCccccCCce-eeccCCCcceEeCCCcchhHHHHHHHHHHHhC-----
Q 037018 41 MWLQFLTAVA-YKTAF-VADIYNNNVDLSAMNPKLRVPKRFI-NKAFPVAFPVDVNCACNAQLNHILDDIIKSVM----- 112 (663)
Q Consensus 41 ~~~~vi~i~G-GKTtl-a~~v~~~~~~~~~~~~~~~~~~~F~-~~~~~~~~~v~vs~~~~~~~~~l~~~i~~~l~----- 112 (663)
++..++|=.| |||+| +..|.|.. . -+ .+++ +-+.+... ...++.+++...=.
T Consensus 164 QR~~Ifg~~g~GKT~Lal~~I~~~~------------~--~dv~~V~-----~~iGeR~~-Ev~~~~~~~~~~g~m~rtv 223 (507)
T 1fx0_A 164 QRELIIGDRQTGKTAVATDTILNQQ------------G--QNVICVY-----VAIGQKAS-SVAQVVTNFQERGAMEYTI 223 (507)
T ss_dssp CBCBEEESSSSSHHHHHHHHHHTCC------------T--TTCEEEE-----EEESCCHH-HHHHHHHHTGGGTGGGSEE
T ss_pred CEEEEecCCCCCccHHHHHHHHHhh------------c--CCcEEEE-----EEcCCCch-HHHHHHHHHHhcCccccce
Confidence 3555555555 99999 56888833 2 34 3456 66666554 14445555543210
Q ss_pred ---C-CCCcchhhhh----HhhHHHHHHHHhhcCCcEEEEEeCCCCChhhHHHHH
Q 037018 113 ---P-PSRVNVIISE----DYKLKTIILRDYLTNKKDFIVLDDVFDDREIWNDLE 159 (663)
Q Consensus 113 ---~-~~~~~~~~~~----~~~l~~~~l~~~L~~kr~LlVLDdv~~~~~~~~~l~ 159 (663)
. .+........ .-.. ++.+++ ++|.+|+++||+..-.+.+.++.
T Consensus 224 vV~atad~p~~~r~~a~~~a~ti-AEyfrd--~G~dVLli~Dsltr~A~A~REis 275 (507)
T 1fx0_A 224 VVAETADSPATLQYLAPYTGAAL-AEYFMY--RERHTLIIYDDLSKQAQAYRQMS 275 (507)
T ss_dssp EEEECTTSCGGGTTHHHHHHHHH-HHHHHH--TTCEEEEEEECHHHHHHHHHHHH
T ss_pred EEEECCCCCHHHHHHHHHHHHHH-HHHHHH--cCCcEEEEEecHHHHHHHHHHHH
Confidence 0 1111111111 2222 333444 58999999999875344444443
No 281
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=69.58 E-value=5.7 Score=40.32 Aligned_cols=100 Identities=14% Similarity=-0.002 Sum_probs=52.3
Q ss_pred hhcHHHHHHHHhcCCCCceEEEEEec----chhhHHHHHhcCCCccccCCCCccccCCceeeccCCCcceEeCCCcchhH
Q 037018 25 KVKVKAVLVWLFMLDSMWLQFLTAVA----YKTAFVADIYNNNVDLSAMNPKLRVPKRFINKAFPVAFPVDVNCACNAQL 100 (663)
Q Consensus 25 ~~~~~~i~~~L~~~~~~~~~vi~i~G----GKTtla~~v~~~~~~~~~~~~~~~~~~~F~~~~~~~~~~v~vs~~~~~~~ 100 (663)
..-...+-.+|....-+.-+++-|.| ||||||.++.. .+...=..++| +.....++ .
T Consensus 56 ~TG~~~LD~~Lg~GGl~~G~li~I~G~pGsGKTtlal~la~------------~~~~~g~~vly-----i~~E~s~~--~ 116 (366)
T 1xp8_A 56 STGSLSLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVA------------QAQKAGGTCAF-----IDAEHALD--P 116 (366)
T ss_dssp CCSCHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHH------------HHHHTTCCEEE-----EESSCCCC--H
T ss_pred cCCCHHHHHHhCCCCccCCcEEEEEcCCCCChHHHHHHHHH------------HHHHCCCeEEE-----EECCCChh--H
Confidence 33344554555312222335677777 99999999877 33222236778 77777766 3
Q ss_pred HHHHHHHHHHhCCCCCc---chhhhhHhhHHHHHHHHhhcC-CcEEEEEeCCCC
Q 037018 101 NHILDDIIKSVMPPSRV---NVIISEDYKLKTIILRDYLTN-KKDFIVLDDVFD 150 (663)
Q Consensus 101 ~~l~~~i~~~l~~~~~~---~~~~~~~~~l~~~~l~~~L~~-kr~LlVLDdv~~ 150 (663)
. .++.++.+... .+..+ .+++ ...+.+..+. +--+||+|.+-.
T Consensus 117 ~-----~a~~~g~d~~~l~i~~~~~-~e~~-l~~l~~l~~~~~~~lVVIDsl~~ 163 (366)
T 1xp8_A 117 V-----YARALGVNTDELLVSQPDN-GEQA-LEIMELLVRSGAIDVVVVDSVAA 163 (366)
T ss_dssp H-----HHHHTTCCGGGCEEECCSS-HHHH-HHHHHHHHTTTCCSEEEEECTTT
T ss_pred H-----HHHHcCCCHHHceeecCCc-HHHH-HHHHHHHHhcCCCCEEEEeChHH
Confidence 3 23444432110 00011 2333 3444444443 344899999865
No 282
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=69.56 E-value=2.2 Score=40.61 Aligned_cols=20 Identities=10% Similarity=0.059 Sum_probs=17.4
Q ss_pred ceEEEEEec----chhhHHHHHhc
Q 037018 42 WLQFLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 42 ~~~vi~i~G----GKTtla~~v~~ 61 (663)
+-.+|||.| ||||+++.+..
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 347899999 99999999877
No 283
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=69.25 E-value=11 Score=42.42 Aligned_cols=45 Identities=7% Similarity=-0.099 Sum_probs=31.2
Q ss_pred ccccchhhcHHHHHHHHhc---CC-------CCceEEEEEec----chhhHHHHHhcCC
Q 037018 19 CSSKTVKVKVKAVLVWLFM---LD-------SMWLQFLTAVA----YKTAFVADIYNNN 63 (663)
Q Consensus 19 ~~~~G~~~~~~~i~~~L~~---~~-------~~~~~vi~i~G----GKTtla~~v~~~~ 63 (663)
..+.|.++.+++|.+++.- .+ ....+-|=++| |||+||++|.+..
T Consensus 204 ~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~el 262 (806)
T 3cf2_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET 262 (806)
T ss_dssp GGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTT
T ss_pred hhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 4678999999888887632 11 11234455666 9999999999933
No 284
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=69.03 E-value=7.4 Score=35.78 Aligned_cols=18 Identities=28% Similarity=0.527 Sum_probs=14.8
Q ss_pred EEEEEec----chhhHHHHHhc
Q 037018 44 QFLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 44 ~vi~i~G----GKTtla~~v~~ 61 (663)
..|.|-| ||||+++.+.+
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~ 24 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYH 24 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHHH
Confidence 3566666 99999999998
No 285
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=69.00 E-value=3.7 Score=39.83 Aligned_cols=43 Identities=9% Similarity=0.012 Sum_probs=28.4
Q ss_pred ccccchhhcHHHHHHHHhc----------CC-CCceEEEEEec----chhhHHHHHhcC
Q 037018 19 CSSKTVKVKVKAVLVWLFM----------LD-SMWLQFLTAVA----YKTAFVADIYNN 62 (663)
Q Consensus 19 ~~~~G~~~~~~~i~~~L~~----------~~-~~~~~vi~i~G----GKTtla~~v~~~ 62 (663)
..+.|.++.++++.+.+.. -+ ...-. +.++| ||||||+++.+.
T Consensus 10 ~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~G-vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 10 ADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAG-VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp --CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSE-EEEESSTTSCHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCe-EEEECCCCCcHHHHHHHHHHH
Confidence 3578888888888765421 01 11122 77788 999999999993
No 286
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=68.92 E-value=10 Score=38.56 Aligned_cols=32 Identities=13% Similarity=0.080 Sum_probs=20.5
Q ss_pred HHHHHHhcCC-CCceEEEEEec-chhhHHHHHhc
Q 037018 30 AVLVWLFMLD-SMWLQFLTAVA-YKTAFVADIYN 61 (663)
Q Consensus 30 ~i~~~L~~~~-~~~~~vi~i~G-GKTtla~~v~~ 61 (663)
+++..|.--. .++..++|=.| |||||++.|.+
T Consensus 164 raID~l~PigrGQR~lIfg~~g~GKT~Ll~~Ia~ 197 (427)
T 3l0o_A 164 RLIDLFAPIGKGQRGMIVAPPKAGKTTILKEIAN 197 (427)
T ss_dssp HHHHHHSCCBTTCEEEEEECTTCCHHHHHHHHHH
T ss_pred hhhhhcccccCCceEEEecCCCCChhHHHHHHHH
Confidence 5556665433 23444444444 99999999988
No 287
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=68.86 E-value=1.7 Score=38.84 Aligned_cols=19 Identities=21% Similarity=0.252 Sum_probs=15.7
Q ss_pred EEEEEec----chhhHHHHHhcC
Q 037018 44 QFLTAVA----YKTAFVADIYNN 62 (663)
Q Consensus 44 ~vi~i~G----GKTtla~~v~~~ 62 (663)
.+++|+| |||||++.+..-
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 4677777 999999999883
No 288
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=68.60 E-value=11 Score=37.19 Aligned_cols=35 Identities=14% Similarity=-0.043 Sum_probs=23.7
Q ss_pred cHHHHHHHHhcCC-----CCceEEEEEec----chhhHHHHHhc
Q 037018 27 KVKAVLVWLFMLD-----SMWLQFLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 27 ~~~~i~~~L~~~~-----~~~~~vi~i~G----GKTtla~~v~~ 61 (663)
-.+++.+.|.... ...-.+|+|+| ||||++..+..
T Consensus 83 ~~~~l~~~l~~~~~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~ 126 (306)
T 1vma_A 83 LKEIILEILNFDTKLNVPPEPPFVIMVVGVNGTGKTTSCGKLAK 126 (306)
T ss_dssp HHHHHHHHTCSCCCCCCCSSSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCcccCCCCeEEEEEcCCCChHHHHHHHHHH
Confidence 3445555554321 12457899998 99999999887
No 289
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=68.60 E-value=3.1 Score=47.29 Aligned_cols=44 Identities=7% Similarity=-0.114 Sum_probs=32.8
Q ss_pred cccccchhhcHHHHHHHHhc---C-------CCCceEEEEEec----chhhHHHHHhc
Q 037018 18 SCSSKTVKVKVKAVLVWLFM---L-------DSMWLQFLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 18 ~~~~~G~~~~~~~i~~~L~~---~-------~~~~~~vi~i~G----GKTtla~~v~~ 61 (663)
-..++|.+..++++.+++.. . ....-..|.++| ||||||+++.+
T Consensus 203 ~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~ 260 (806)
T 1ypw_A 203 YDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 260 (806)
T ss_dssp GGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHH
T ss_pred HHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHH
Confidence 35689999999999988853 0 011234577777 99999999998
No 290
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=68.57 E-value=2 Score=38.30 Aligned_cols=20 Identities=15% Similarity=0.111 Sum_probs=16.9
Q ss_pred ceEEEEEec----chhhHHHHHhc
Q 037018 42 WLQFLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 42 ~~~vi~i~G----GKTtla~~v~~ 61 (663)
...+++|+| ||||++.++..
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 356788888 99999999988
No 291
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=68.42 E-value=8.6 Score=40.50 Aligned_cols=110 Identities=13% Similarity=0.133 Sum_probs=56.3
Q ss_pred HHHHHhc-CCCCceEEEEEec-chhhH-HHHHhcCCCccccCCCCccc----cCCce-eeccCCCcceEeCCCcchhHHH
Q 037018 31 VLVWLFM-LDSMWLQFLTAVA-YKTAF-VADIYNNNVDLSAMNPKLRV----PKRFI-NKAFPVAFPVDVNCACNAQLNH 102 (663)
Q Consensus 31 i~~~L~~-~~~~~~~vi~i~G-GKTtl-a~~v~~~~~~~~~~~~~~~~----~~~F~-~~~~~~~~~v~vs~~~~~~~~~ 102 (663)
++..|.- ...++..++|=.| |||+| +..|.|.. .. .++-+ .+++ +-+.+... ...+
T Consensus 152 aID~l~PigrGQR~~I~g~~g~GKT~Lal~~I~~q~----------~~~~~~~~~~d~~~V~-----~~IGeR~~-Ev~~ 215 (510)
T 2ck3_A 152 AVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQK----------RFNDGTDEKKKLYCIY-----VAIGQKRS-TVAQ 215 (510)
T ss_dssp HHHHHSCCBTTCBCEEEESTTSSHHHHHHHHHHHTH----------HHHTSCCTTTCCEEEE-----EEESCCHH-HHHH
T ss_pred eeccccccccCCEEEEecCCCCCchHHHHHHHHHHH----------hhccccccCCCeEEEE-----EECCCCcH-HHHH
Confidence 3444433 3334656665555 99999 56788833 21 02344 3566 77776654 1555
Q ss_pred HHHHHHHHhCC---------CCCcchhhhhHh----hHHHHHHHHhhcCCcEEEEEeCCCCChhhHHHHH
Q 037018 103 ILDDIIKSVMP---------PSRVNVIISEDY----KLKTIILRDYLTNKKDFIVLDDVFDDREIWNDLE 159 (663)
Q Consensus 103 l~~~i~~~l~~---------~~~~~~~~~~~~----~l~~~~l~~~L~~kr~LlVLDdv~~~~~~~~~l~ 159 (663)
+.+++...=.. .+.......... .. ++.+++ ++|.+||++||+..-.+.+.++.
T Consensus 216 ~~~~~~~~g~m~~tvvV~atad~p~~~r~~a~~~a~ti-AEyfrd--~G~dVLli~Dsltr~A~A~REis 282 (510)
T 2ck3_A 216 LVKRLTDADAMKYTIVVSATASDAAPLQYLAPYSGCSM-GEYFRD--NGKHALIIYDDLSKQAVAYRQMS 282 (510)
T ss_dssp HHHHHHHTTCGGGEEEEEECTTSCHHHHHHHHHHHHHH-HHHHHT--TTCEEEEEEETHHHHHHHHHHHH
T ss_pred HHHHHHhcCCcccceEEEECCCCCHHHHHHHHHHHHHH-HHHHHH--cCCcEEEEEcCHHHHHHHHHHHH
Confidence 66666542110 111111111111 22 233333 57999999999875344444444
No 292
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=68.39 E-value=19 Score=37.82 Aligned_cols=109 Identities=14% Similarity=0.134 Sum_probs=56.1
Q ss_pred HHHHHHHHhcCCCCceEEEEEec-chhhHH-HHHhcCCCccccCCCCccccCCce-eeccCCCcceEeCCCcchhHHHHH
Q 037018 28 VKAVLVWLFMLDSMWLQFLTAVA-YKTAFV-ADIYNNNVDLSAMNPKLRVPKRFI-NKAFPVAFPVDVNCACNAQLNHIL 104 (663)
Q Consensus 28 ~~~i~~~L~~~~~~~~~vi~i~G-GKTtla-~~v~~~~~~~~~~~~~~~~~~~F~-~~~~~~~~~v~vs~~~~~~~~~l~ 104 (663)
++.|=.++--...++..++|=.| |||+|| ..|.|.. .-+ .+++ +-+.+... ...++.
T Consensus 150 ikaID~l~PigrGQR~~Ifg~~g~GKT~l~l~~I~n~~--------------~~dv~~V~-----~~IGeR~~-ev~e~~ 209 (513)
T 3oaa_A 150 YKAVDSMIPIGRGQRELIIGDRQTGKTALAIDAIINQR--------------DSGIKCIY-----VAIGQKAS-TISNVV 209 (513)
T ss_dssp CHHHHHHSCCBTTCBCEEEESSSSSHHHHHHHHHHTTS--------------SSSCEEEE-----EEESCCHH-HHHHHH
T ss_pred eeeeccccccccCCEEEeecCCCCCcchHHHHHHHhhc--------------cCCceEEE-----EEecCChH-HHHHHH
Confidence 33333333333334666666556 999995 6788722 223 3467 77776654 155566
Q ss_pred HHHHHHhCC---------CCCcchhhhh----HhhHHHHHHHHhhcCCcEEEEEeCCCCChhhHHHHH
Q 037018 105 DDIIKSVMP---------PSRVNVIISE----DYKLKTIILRDYLTNKKDFIVLDDVFDDREIWNDLE 159 (663)
Q Consensus 105 ~~i~~~l~~---------~~~~~~~~~~----~~~l~~~~l~~~L~~kr~LlVLDdv~~~~~~~~~l~ 159 (663)
+++...=.. .+........ .-.. ++.+++ ++|.+||++||+..-.+...++.
T Consensus 210 ~~l~~~g~m~~tvvV~atad~p~~~r~~a~~~a~ti-AEyfrd--~G~dVLli~Dsltr~A~A~REis 274 (513)
T 3oaa_A 210 RKLEEHGALANTIVVVATASESAALQYLAPYAGCAM-GEYFRD--RGEDALIIYDDLSKQAVAYRQIS 274 (513)
T ss_dssp HHHHHHSCSTTEEEEEECTTSCHHHHHHHHHHHHHH-HHHHHH--TTCEEEEEEETHHHHHHHHHHHH
T ss_pred HHHhhcCcccceEEEEECCCCChHHHHHHHHHHHHH-HHHHHh--cCCCEEEEecChHHHHHHHHHHH
Confidence 665443111 1111111111 1122 333443 58999999999875233344433
No 293
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=68.37 E-value=2 Score=38.67 Aligned_cols=18 Identities=6% Similarity=0.071 Sum_probs=15.8
Q ss_pred EEEEEec----chhhHHHHHhc
Q 037018 44 QFLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 44 ~vi~i~G----GKTtla~~v~~ 61 (663)
++++|+| |||||++.+..
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~ 27 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLIT 27 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4778888 99999999987
No 294
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=68.25 E-value=2.3 Score=38.89 Aligned_cols=18 Identities=22% Similarity=0.270 Sum_probs=15.6
Q ss_pred EEEEEec----chhhHHHHHhc
Q 037018 44 QFLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 44 ~vi~i~G----GKTtla~~v~~ 61 (663)
.+++|.| |||||++.+..
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~ 29 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVK 29 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECcCCCCHHHHHHHHHh
Confidence 4677887 99999999987
No 295
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=68.17 E-value=2.7 Score=40.87 Aligned_cols=43 Identities=9% Similarity=-0.053 Sum_probs=29.1
Q ss_pred cccccchhhcHHHHHHHHhcCCC----------CceEEEEEec----chhhHHHHHhc
Q 037018 18 SCSSKTVKVKVKAVLVWLFMLDS----------MWLQFLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 18 ~~~~~G~~~~~~~i~~~L~~~~~----------~~~~vi~i~G----GKTtla~~v~~ 61 (663)
-..++|.+..++++.++...-.. .... +.|+| ||||||+++.+
T Consensus 39 ~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~g-vll~Gp~GtGKTtl~~~i~~ 95 (278)
T 1iy2_A 39 FKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKG-VLLVGPPGVGKTHLARAVAG 95 (278)
T ss_dssp GGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCE-EEEECCTTSSHHHHHHHHHH
T ss_pred HHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCe-EEEECCCcChHHHHHHHHHH
Confidence 34688998887777765532100 0112 67777 99999999999
No 296
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=68.15 E-value=8.2 Score=40.01 Aligned_cols=44 Identities=9% Similarity=-0.081 Sum_probs=30.5
Q ss_pred cccccchhhcHHHHHHHHhc---C-------CCCceEEEEEec----chhhHHHHHhc
Q 037018 18 SCSSKTVKVKVKAVLVWLFM---L-------DSMWLQFLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 18 ~~~~~G~~~~~~~i~~~L~~---~-------~~~~~~vi~i~G----GKTtla~~v~~ 61 (663)
-..+.|.++.+++|.+.+.. . +....+-|=++| |||++|++|.+
T Consensus 171 ~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~ 228 (428)
T 4b4t_K 171 YADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVAN 228 (428)
T ss_dssp GGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 34688999999988876632 1 111233345566 99999999999
No 297
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=67.89 E-value=2.6 Score=38.50 Aligned_cols=20 Identities=10% Similarity=-0.011 Sum_probs=17.5
Q ss_pred ceEEEEEec----chhhHHHHHhc
Q 037018 42 WLQFLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 42 ~~~vi~i~G----GKTtla~~v~~ 61 (663)
+..+|+|.| ||||+|+.+..
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 457888888 99999999988
No 298
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=67.69 E-value=2.6 Score=38.08 Aligned_cols=18 Identities=6% Similarity=0.026 Sum_probs=15.2
Q ss_pred EEEEEec----chhhHHHHHhc
Q 037018 44 QFLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 44 ~vi~i~G----GKTtla~~v~~ 61 (663)
.+++|.| ||||+++.+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 4677777 99999999976
No 299
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=67.55 E-value=2.5 Score=38.68 Aligned_cols=19 Identities=5% Similarity=-0.017 Sum_probs=16.1
Q ss_pred eEEEEEec----chhhHHHHHhc
Q 037018 43 LQFLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 43 ~~vi~i~G----GKTtla~~v~~ 61 (663)
-.+|+|.| ||||+|+.+..
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~ 47 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQ 47 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 36777777 99999999988
No 300
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=67.53 E-value=3 Score=42.57 Aligned_cols=43 Identities=12% Similarity=0.027 Sum_probs=29.1
Q ss_pred ccccchhhcHHHHHHHHh----c--------------------------CCCCceEEEEEec-chhhHHHHHhc
Q 037018 19 CSSKTVKVKVKAVLVWLF----M--------------------------LDSMWLQFLTAVA-YKTAFVADIYN 61 (663)
Q Consensus 19 ~~~~G~~~~~~~i~~~L~----~--------------------------~~~~~~~vi~i~G-GKTtla~~v~~ 61 (663)
..++|.+..++.+...+. . .....+-++|=.| ||||+|+++.+
T Consensus 21 ~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~ 94 (376)
T 1um8_A 21 NYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAK 94 (376)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred hHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHH
Confidence 357899998888887772 0 0111344444444 99999999998
No 301
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=67.45 E-value=4.2 Score=40.21 Aligned_cols=20 Identities=5% Similarity=-0.067 Sum_probs=17.5
Q ss_pred ceEEEEEec----chhhHHHHHhc
Q 037018 42 WLQFLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 42 ~~~vi~i~G----GKTtla~~v~~ 61 (663)
+-.+|||.| |||||++.+..
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 457899998 99999999987
No 302
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=67.28 E-value=3.2 Score=36.90 Aligned_cols=19 Identities=11% Similarity=0.184 Sum_probs=16.2
Q ss_pred eEEEEEec----chhhHHHHHhc
Q 037018 43 LQFLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 43 ~~vi~i~G----GKTtla~~v~~ 61 (663)
-.+|+|.| ||||+|+.+..
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 46788888 99999999987
No 303
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=67.26 E-value=2.4 Score=38.12 Aligned_cols=38 Identities=11% Similarity=0.372 Sum_probs=22.4
Q ss_pred hcCCcEEEEEeCCC--C--ChhhHHHHHhhCCCCCCCceEEEEE
Q 037018 136 LTNKKDFIVLDDVF--D--DREIWNDLEKFLPDNQNGSRVLILV 175 (663)
Q Consensus 136 L~~kr~LlVLDdv~--~--~~~~~~~l~~~~~~~~~gskIiiT~ 175 (663)
+..+.=+++||++. + |....+.+...+.. .+..||+++
T Consensus 96 l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~--~~~~~i~~~ 137 (178)
T 1ye8_A 96 KKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD--PNVNVVATI 137 (178)
T ss_dssp HHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC--TTSEEEEEC
T ss_pred cccCCCEEEEeCCCCcccCCHHHHHHHHHHHhc--CCCeEEEEE
Confidence 56667788999953 3 34445555555544 244466665
No 304
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=66.84 E-value=0.92 Score=46.07 Aligned_cols=47 Identities=19% Similarity=0.154 Sum_probs=34.6
Q ss_pred HHHHHHhhcCCcEEEEEeCCCCChhhHHHHHhhCCCCCCCceEEEEEeCCC
Q 037018 129 TIILRDYLTNKKDFIVLDDVFDDREIWNDLEKFLPDNQNGSRVLILVTDPF 179 (663)
Q Consensus 129 ~~~l~~~L~~kr~LlVLDdv~~~~~~~~~l~~~~~~~~~gskIiiT~r~~~ 179 (663)
...+...|....=+|++|++.+ .+.++.+.... ..|--|++|+-+..
T Consensus 186 ~~~La~aL~~~PdvillDEp~d-~e~~~~~~~~~---~~G~~vl~t~H~~~ 232 (356)
T 3jvv_A 186 SEALRSALREDPDIILVGEMRD-LETIRLALTAA---ETGHLVFGTLHTTS 232 (356)
T ss_dssp HHHHHHHTTSCCSEEEESCCCS-HHHHHHHHHHH---HTTCEEEEEESCSS
T ss_pred HHHHHHHhhhCcCEEecCCCCC-HHHHHHHHHHH---hcCCEEEEEEccCh
Confidence 4567888888899999999998 88777766543 23656777766554
No 305
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=66.66 E-value=2 Score=38.94 Aligned_cols=18 Identities=6% Similarity=0.224 Sum_probs=15.3
Q ss_pred EEEEEec----chhhHHHHHhc
Q 037018 44 QFLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 44 ~vi~i~G----GKTtla~~v~~ 61 (663)
++++|.| |||||++.+..
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~ 23 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 3577777 99999999987
No 306
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=66.55 E-value=3.5 Score=41.88 Aligned_cols=42 Identities=10% Similarity=-0.057 Sum_probs=29.6
Q ss_pred cccchhhcHHHHHHHHh------------cCCCCceEEEEEec----chhhHHHHHhc
Q 037018 20 SSKTVKVKVKAVLVWLF------------MLDSMWLQFLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 20 ~~~G~~~~~~~i~~~L~------------~~~~~~~~vi~i~G----GKTtla~~v~~ 61 (663)
.++|.+..++.+...+. .........|-++| |||++|+++.+
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~ 73 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLAR 73 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHH
Confidence 47999999999988883 11000123355566 99999999998
No 307
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=66.21 E-value=9.6 Score=34.74 Aligned_cols=16 Identities=13% Similarity=0.013 Sum_probs=13.4
Q ss_pred EEEec----chhhHHHHHhc
Q 037018 46 LTAVA----YKTAFVADIYN 61 (663)
Q Consensus 46 i~i~G----GKTtla~~v~~ 61 (663)
|.|-| ||||.++.+.+
T Consensus 3 I~~EG~DGsGKsTq~~~L~~ 22 (197)
T 3hjn_A 3 ITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 45556 99999999998
No 308
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=66.11 E-value=2.5 Score=38.68 Aligned_cols=17 Identities=6% Similarity=-0.072 Sum_probs=14.3
Q ss_pred EEEEec----chhhHHHHHhc
Q 037018 45 FLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 45 vi~i~G----GKTtla~~v~~ 61 (663)
+|+|.| ||||+++.+..
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 467776 99999999977
No 309
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=65.92 E-value=2.2 Score=37.83 Aligned_cols=17 Identities=12% Similarity=0.018 Sum_probs=14.3
Q ss_pred EEEEec----chhhHHHHHhc
Q 037018 45 FLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 45 vi~i~G----GKTtla~~v~~ 61 (663)
+|+|.| ||||+++.+..
T Consensus 6 ~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 6 NIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 466666 99999999988
No 310
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=65.69 E-value=2.7 Score=37.07 Aligned_cols=17 Identities=12% Similarity=0.331 Sum_probs=14.2
Q ss_pred EEEEec----chhhHHHHHhc
Q 037018 45 FLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 45 vi~i~G----GKTtla~~v~~ 61 (663)
+|.|.| ||||+|+.+..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 466666 99999999987
No 311
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=65.58 E-value=2.6 Score=39.27 Aligned_cols=18 Identities=11% Similarity=0.062 Sum_probs=15.6
Q ss_pred EEEEEec----chhhHHHHHhc
Q 037018 44 QFLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 44 ~vi~i~G----GKTtla~~v~~ 61 (663)
.+|+|.| ||||+|+.+..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4688888 99999999987
No 312
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=65.28 E-value=0.67 Score=42.17 Aligned_cols=42 Identities=17% Similarity=0.291 Sum_probs=25.4
Q ss_pred HhhcCCcEEEEEeCCCC-ChhhHHHHHhhCCCCCCCceEEEEEeCC
Q 037018 134 DYLTNKKDFIVLDDVFD-DREIWNDLEKFLPDNQNGSRVLILVTDP 178 (663)
Q Consensus 134 ~~L~~kr~LlVLDdv~~-~~~~~~~l~~~~~~~~~gskIiiT~r~~ 178 (663)
+.+.++.-+|++|.+-. +.+..+.+....+. |-.|++|.++.
T Consensus 71 ~~~~~~~dvviIDE~Q~~~~~~~~~l~~l~~~---~~~Vi~~Gl~~ 113 (184)
T 2orw_A 71 KYIEEDTRGVFIDEVQFFNPSLFEVVKDLLDR---GIDVFCAGLDL 113 (184)
T ss_dssp GGCCTTEEEEEECCGGGSCTTHHHHHHHHHHT---TCEEEEEEESB
T ss_pred HHhcCCCCEEEEECcccCCHHHHHHHHHHHHC---CCCEEEEeecc
Confidence 33444566999999877 23444444333322 77899996643
No 313
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=64.82 E-value=3.1 Score=36.99 Aligned_cols=17 Identities=6% Similarity=0.272 Sum_probs=14.0
Q ss_pred EEEEec----chhhHHHHHhc
Q 037018 45 FLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 45 vi~i~G----GKTtla~~v~~ 61 (663)
+|.|.| ||||+|+.+..
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHh
Confidence 456666 99999999987
No 314
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=64.59 E-value=2.4 Score=38.86 Aligned_cols=18 Identities=11% Similarity=0.043 Sum_probs=14.9
Q ss_pred EEEEEec----chhhHHHHHhc
Q 037018 44 QFLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 44 ~vi~i~G----GKTtla~~v~~ 61 (663)
.+|+|.| ||||+|+.+..
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3566666 99999999988
No 315
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=64.51 E-value=3.4 Score=37.92 Aligned_cols=18 Identities=11% Similarity=-0.003 Sum_probs=15.7
Q ss_pred EEEEEec----chhhHHHHHhc
Q 037018 44 QFLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 44 ~vi~i~G----GKTtla~~v~~ 61 (663)
.+|||.| ||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4688888 99999999966
No 316
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=64.31 E-value=23 Score=38.60 Aligned_cols=48 Identities=17% Similarity=0.216 Sum_probs=26.9
Q ss_pred HHHHHHhhcCCcEEEEEeCCCC--ChhhHHHHHhhCCCC--CCCceEEEEEe
Q 037018 129 TIILRDYLTNKKDFIVLDDVFD--DREIWNDLEKFLPDN--QNGSRVLILVT 176 (663)
Q Consensus 129 ~~~l~~~L~~kr~LlVLDdv~~--~~~~~~~l~~~~~~~--~~gskIiiT~r 176 (663)
.-.|-+.|-.+.=+++||.--+ |...-..+...+... ..|.-||++|-
T Consensus 479 Rv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsH 530 (607)
T 3bk7_A 479 RVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEH 530 (607)
T ss_dssp HHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECS
T ss_pred HHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeC
Confidence 3345566777777889999877 555444444433321 12444555544
No 317
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=64.01 E-value=2.7 Score=38.42 Aligned_cols=18 Identities=11% Similarity=0.209 Sum_probs=15.3
Q ss_pred EEEEEec----chhhHHHHHhc
Q 037018 44 QFLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 44 ~vi~i~G----GKTtla~~v~~ 61 (663)
.+|+|.| ||||+++.+..
T Consensus 30 ~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 30 RHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5677777 99999999987
No 318
>1w78_A FOLC bifunctional protein; DHFS, dihydrofolate synthase, synthase, ATP-binding, folate biosynthesis, ligase, multifunctional enzyme; HET: KCX PD8 ADP; 1.82A {Escherichia coli} PDB: 1w7k_A*
Probab=63.80 E-value=5.3 Score=41.52 Aligned_cols=33 Identities=18% Similarity=0.023 Sum_probs=24.9
Q ss_pred HHHHHHHHhcCCCCceEEEEEec--chhhHHHHHhc
Q 037018 28 VKAVLVWLFMLDSMWLQFLTAVA--YKTAFVADIYN 61 (663)
Q Consensus 28 ~~~i~~~L~~~~~~~~~vi~i~G--GKTtla~~v~~ 61 (663)
+.++.+.|..... +.++|+|.| ||||.+..+..
T Consensus 35 ~~~~l~~lg~p~~-~~~vI~VTGTnGKtTT~~~l~~ 69 (422)
T 1w78_A 35 VSLVAARLGVLKP-APFVFTVAGTNGKGTTCRTLES 69 (422)
T ss_dssp HHHHHHHHTCSSC-SSEEEEEECSSCHHHHHHHHHH
T ss_pred HHHHHHHcCCccc-CCcEEEEeCCcChHHHHHHHHH
Confidence 4555566655444 689999999 99999888776
No 319
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=63.76 E-value=3.1 Score=38.28 Aligned_cols=19 Identities=11% Similarity=0.006 Sum_probs=16.3
Q ss_pred eEEEEEec----chhhHHHHHhc
Q 037018 43 LQFLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 43 ~~vi~i~G----GKTtla~~v~~ 61 (663)
=.+++|+| |||||++.+..
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~g 42 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRE 42 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 35788888 99999999987
No 320
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=63.65 E-value=2.8 Score=37.00 Aligned_cols=20 Identities=15% Similarity=0.222 Sum_probs=15.8
Q ss_pred ceEEEEEec----chhhHHHHHhc
Q 037018 42 WLQFLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 42 ~~~vi~i~G----GKTtla~~v~~ 61 (663)
..++|+|.| ||||+|+.+..
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHH
T ss_pred ccceEEEECCCCCCHHHHHHHHHH
Confidence 456777777 99999999988
No 321
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=63.48 E-value=2.8 Score=38.28 Aligned_cols=18 Identities=11% Similarity=-0.097 Sum_probs=14.6
Q ss_pred EEEEEec----chhhHHHHHhc
Q 037018 44 QFLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 44 ~vi~i~G----GKTtla~~v~~ 61 (663)
.+|.|.| ||||+|+.+..
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 3566666 99999999988
No 322
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=63.23 E-value=3.1 Score=37.86 Aligned_cols=17 Identities=24% Similarity=0.309 Sum_probs=13.1
Q ss_pred EEEEec-chhhHHHHHhc
Q 037018 45 FLTAVA-YKTAFVADIYN 61 (663)
Q Consensus 45 vi~i~G-GKTtla~~v~~ 61 (663)
++|..| ||||+|+.+.+
T Consensus 5 i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 5 IFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EECCTTSCHHHHHHHHHH
T ss_pred EECCCccCHHHHHHHHHH
Confidence 344444 99999999988
No 323
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=63.15 E-value=3.2 Score=37.99 Aligned_cols=19 Identities=11% Similarity=0.174 Sum_probs=15.7
Q ss_pred EEEEEec----chhhHHHHHhcC
Q 037018 44 QFLTAVA----YKTAFVADIYNN 62 (663)
Q Consensus 44 ~vi~i~G----GKTtla~~v~~~ 62 (663)
.+|+|.| ||||+++.+...
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 4677777 999999999873
No 324
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=62.96 E-value=11 Score=38.68 Aligned_cols=18 Identities=6% Similarity=-0.051 Sum_probs=14.5
Q ss_pred eEEEEEec----chhhHHHHHh
Q 037018 43 LQFLTAVA----YKTAFVADIY 60 (663)
Q Consensus 43 ~~vi~i~G----GKTtla~~v~ 60 (663)
-.++.|+| |||||+..+.
T Consensus 178 Gei~~I~G~sGsGKTTLl~~la 199 (400)
T 3lda_A 178 GSITELFGEFRTGKSQLCHTLA 199 (400)
T ss_dssp TSEEEEEESTTSSHHHHHHHHH
T ss_pred CcEEEEEcCCCCChHHHHHHHH
Confidence 35777777 9999999765
No 325
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=62.93 E-value=3.4 Score=36.77 Aligned_cols=17 Identities=12% Similarity=0.047 Sum_probs=13.1
Q ss_pred EEEEec-chhhHHHHHhc
Q 037018 45 FLTAVA-YKTAFVADIYN 61 (663)
Q Consensus 45 vi~i~G-GKTtla~~v~~ 61 (663)
++|..| ||||+|+.+.+
T Consensus 8 l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 8 LNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp EECCTTSSHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 334444 99999999998
No 326
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=62.73 E-value=3.9 Score=37.87 Aligned_cols=38 Identities=11% Similarity=-0.160 Sum_probs=27.2
Q ss_pred ccchhhcHHHHHHHHhcCCCCceEEEEEec----chhhHHHHHhc
Q 037018 21 SKTVKVKVKAVLVWLFMLDSMWLQFLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 21 ~~G~~~~~~~i~~~L~~~~~~~~~vi~i~G----GKTtla~~v~~ 61 (663)
+-+.++..+++...+... +..+|.|+| |||||+.++..
T Consensus 11 l~~~~~~~~~~~~~~~~~---~~~~i~i~G~~g~GKTTl~~~l~~ 52 (221)
T 2wsm_A 11 LAENKRLAEKNREALRES---GTVAVNIMGAIGSGKTLLIERTIE 52 (221)
T ss_dssp CHHHHHHHHHHHHHHHHH---TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred HhhcHHHHHHHHHhhccc---CceEEEEEcCCCCCHHHHHHHHHH
Confidence 445556666666665433 467788888 99999999887
No 327
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=62.44 E-value=6.5 Score=37.48 Aligned_cols=38 Identities=16% Similarity=-0.195 Sum_probs=24.5
Q ss_pred hhhcHHHHHHHHhcCC--CCceEEEEEec----chhhHHHHHhc
Q 037018 24 VKVKVKAVLVWLFMLD--SMWLQFLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 24 ~~~~~~~i~~~L~~~~--~~~~~vi~i~G----GKTtla~~v~~ 61 (663)
++...+++...+.... .+.-.+|.+.| ||||+|+.+..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 11 FKHALARNLRSLTRGKKSSKQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp HHHHHHHHHHHHHTTCCCCSSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCCcccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3444455554444332 23456777887 99999999988
No 328
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=62.41 E-value=3.6 Score=37.08 Aligned_cols=18 Identities=17% Similarity=0.049 Sum_probs=15.1
Q ss_pred EEEEEec----chhhHHHHHhc
Q 037018 44 QFLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 44 ~vi~i~G----GKTtla~~v~~ 61 (663)
.+|+|.| ||||+|+.+.+
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4677777 99999999987
No 329
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=62.05 E-value=4.2 Score=37.45 Aligned_cols=21 Identities=5% Similarity=0.064 Sum_probs=17.2
Q ss_pred eEEEEEec----chhhHHHHHhcCC
Q 037018 43 LQFLTAVA----YKTAFVADIYNNN 63 (663)
Q Consensus 43 ~~vi~i~G----GKTtla~~v~~~~ 63 (663)
-.+|+|+| ||||+++.+....
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 35788888 9999999999843
No 330
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=62.02 E-value=3.9 Score=37.34 Aligned_cols=20 Identities=5% Similarity=0.027 Sum_probs=17.1
Q ss_pred ceEEEEEec----chhhHHHHHhc
Q 037018 42 WLQFLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 42 ~~~vi~i~G----GKTtla~~v~~ 61 (663)
...+|+|.| ||||+|+.+.+
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 456788888 99999999987
No 331
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=61.57 E-value=3.7 Score=37.42 Aligned_cols=20 Identities=10% Similarity=0.016 Sum_probs=17.6
Q ss_pred ceEEEEEec----chhhHHHHHhc
Q 037018 42 WLQFLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 42 ~~~vi~i~G----GKTtla~~v~~ 61 (663)
.-.+|||.| ||||+|+.+..
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHH
Confidence 457899999 99999999887
No 332
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=61.26 E-value=4.1 Score=42.44 Aligned_cols=43 Identities=12% Similarity=-0.054 Sum_probs=30.4
Q ss_pred ccccchhhcHHHHHHHHhcC--------------CCCceEEEEEec-chhhHHHHHhc
Q 037018 19 CSSKTVKVKVKAVLVWLFML--------------DSMWLQFLTAVA-YKTAFVADIYN 61 (663)
Q Consensus 19 ~~~~G~~~~~~~i~~~L~~~--------------~~~~~~vi~i~G-GKTtla~~v~~ 61 (663)
..++|.++.++.+...+... ....+-++|-.| ||||+|+++..
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~ 72 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAK 72 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHH
Confidence 46899999888887776221 112455555555 99999999998
No 333
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=61.05 E-value=3.4 Score=39.26 Aligned_cols=21 Identities=14% Similarity=0.110 Sum_probs=18.0
Q ss_pred ceEEEEEec----chhhHHHHHhcCC
Q 037018 42 WLQFLTAVA----YKTAFVADIYNNN 63 (663)
Q Consensus 42 ~~~vi~i~G----GKTtla~~v~~~~ 63 (663)
+ .+++|+| |||||++.+..-.
T Consensus 24 ~-e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 24 R-DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp S-SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred C-EEEEEECCCCCCHHHHHHHHhCCC
Confidence 5 7888888 9999999998743
No 334
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=60.84 E-value=3.9 Score=36.74 Aligned_cols=18 Identities=11% Similarity=0.034 Sum_probs=13.9
Q ss_pred EEEEEec-chhhHHHHHhc
Q 037018 44 QFLTAVA-YKTAFVADIYN 61 (663)
Q Consensus 44 ~vi~i~G-GKTtla~~v~~ 61 (663)
-+.|+.| ||||+|+.+.+
T Consensus 5 ~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 5 IVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEECTTSCHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHH
Confidence 3444555 99999999988
No 335
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=60.63 E-value=3.9 Score=37.85 Aligned_cols=19 Identities=11% Similarity=-0.029 Sum_probs=15.2
Q ss_pred EEEEEec----chhhHHHHHhcC
Q 037018 44 QFLTAVA----YKTAFVADIYNN 62 (663)
Q Consensus 44 ~vi~i~G----GKTtla~~v~~~ 62 (663)
.+++|+| |||||++.+..-
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 4567777 999999999863
No 336
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=60.59 E-value=4 Score=39.06 Aligned_cols=18 Identities=17% Similarity=0.030 Sum_probs=15.0
Q ss_pred EEEEEec----chhhHHHHHhc
Q 037018 44 QFLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 44 ~vi~i~G----GKTtla~~v~~ 61 (663)
.+|.|.| ||||+|+.+..
T Consensus 2 ~li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHh
Confidence 3567777 99999999987
No 337
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=60.16 E-value=4 Score=38.74 Aligned_cols=18 Identities=11% Similarity=-0.066 Sum_probs=14.9
Q ss_pred EEEEEec----chhhHHHHHhc
Q 037018 44 QFLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 44 ~vi~i~G----GKTtla~~v~~ 61 (663)
.+|+|.| ||||+++.+.+
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La~ 49 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIAQ 49 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4666777 99999999995
No 338
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=60.15 E-value=4 Score=38.27 Aligned_cols=48 Identities=10% Similarity=0.234 Sum_probs=26.7
Q ss_pred HHHHHhhcCCcEEEEEeCCCC--ChhhHHHHHhhCCCC-CCCceEEEEEeC
Q 037018 130 IILRDYLTNKKDFIVLDDVFD--DREIWNDLEKFLPDN-QNGSRVLILVTD 177 (663)
Q Consensus 130 ~~l~~~L~~kr~LlVLDdv~~--~~~~~~~l~~~~~~~-~~gskIiiT~r~ 177 (663)
-.+-+.|-.+.=+++||+--. |...-+.+...+... ..|.-||++|.+
T Consensus 149 v~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd 199 (224)
T 2pcj_A 149 VAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHE 199 (224)
T ss_dssp HHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSC
T ss_pred HHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCC
Confidence 345566666777889999876 544444444433311 125556665543
No 339
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=60.00 E-value=4.3 Score=37.76 Aligned_cols=20 Identities=10% Similarity=-0.061 Sum_probs=17.1
Q ss_pred ceEEEEEec----chhhHHHHHhc
Q 037018 42 WLQFLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 42 ~~~vi~i~G----GKTtla~~v~~ 61 (663)
+=.+++|+| |||||++.+..
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g 47 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAV 47 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 347888888 99999999976
No 340
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=59.75 E-value=3.3 Score=37.64 Aligned_cols=18 Identities=11% Similarity=0.037 Sum_probs=14.2
Q ss_pred EEEEec----chhhHHHHHhcC
Q 037018 45 FLTAVA----YKTAFVADIYNN 62 (663)
Q Consensus 45 vi~i~G----GKTtla~~v~~~ 62 (663)
+++|+| |||||++.+...
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 355666 999999998873
No 341
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=59.60 E-value=7.5 Score=38.23 Aligned_cols=21 Identities=14% Similarity=0.063 Sum_probs=17.7
Q ss_pred ceEEEEEec----chhhHHHHHhcC
Q 037018 42 WLQFLTAVA----YKTAFVADIYNN 62 (663)
Q Consensus 42 ~~~vi~i~G----GKTtla~~v~~~ 62 (663)
+-.+++++| ||||+++.+..-
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~ 123 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHR 123 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 357899999 999999998773
No 342
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=59.51 E-value=4 Score=36.74 Aligned_cols=17 Identities=18% Similarity=0.258 Sum_probs=14.1
Q ss_pred EEEEec----chhhHHHHHhc
Q 037018 45 FLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 45 vi~i~G----GKTtla~~v~~ 61 (663)
+|+|.| ||||+|+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 456666 99999999988
No 343
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=59.44 E-value=8.8 Score=39.69 Aligned_cols=37 Identities=5% Similarity=-0.135 Sum_probs=23.9
Q ss_pred cchhhcHHHHHHHHhcCCCCceEEEEEec----chhhHHHHHhc
Q 037018 22 KTVKVKVKAVLVWLFMLDSMWLQFLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 22 ~G~~~~~~~i~~~L~~~~~~~~~vi~i~G----GKTtla~~v~~ 61 (663)
+|+......+..-+... +-.+++|+| ||||+++.+..
T Consensus 149 Lg~~~~~~~~L~~l~~~---~ggii~I~GpnGSGKTTlL~allg 189 (418)
T 1p9r_A 149 LGMTAHNHDNFRRLIKR---PHGIILVTGPTGSGKSTTLYAGLQ 189 (418)
T ss_dssp SCCCHHHHHHHHHHHTS---SSEEEEEECSTTSCHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHh---cCCeEEEECCCCCCHHHHHHHHHh
Confidence 45544434444434332 346788888 99999999988
No 344
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=59.20 E-value=3.8 Score=38.45 Aligned_cols=20 Identities=10% Similarity=-0.049 Sum_probs=17.0
Q ss_pred ceEEEEEec----chhhHHHHHhc
Q 037018 42 WLQFLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 42 ~~~vi~i~G----GKTtla~~v~~ 61 (663)
+-.+|+|.| ||||+++.+..
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~ 42 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEK 42 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHh
Confidence 346788888 99999999988
No 345
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=59.12 E-value=3.3 Score=40.61 Aligned_cols=20 Identities=0% Similarity=-0.080 Sum_probs=16.2
Q ss_pred ceEEEEEec----chhhHHHHHhc
Q 037018 42 WLQFLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 42 ~~~vi~i~G----GKTtla~~v~~ 61 (663)
+..+|||.| ||||+|+.+.+
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 346899999 99999999877
No 346
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=58.96 E-value=4.6 Score=38.32 Aligned_cols=20 Identities=5% Similarity=-0.026 Sum_probs=17.1
Q ss_pred EEEEEec----chhhHHHHHhcCC
Q 037018 44 QFLTAVA----YKTAFVADIYNNN 63 (663)
Q Consensus 44 ~vi~i~G----GKTtla~~v~~~~ 63 (663)
.+++|+| |||||++.+..-.
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 29 SIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 6788888 9999999998754
No 347
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=58.75 E-value=3.2 Score=37.95 Aligned_cols=18 Identities=6% Similarity=0.217 Sum_probs=14.7
Q ss_pred EEEEEec----chhhHHHHHhc
Q 037018 44 QFLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 44 ~vi~i~G----GKTtla~~v~~ 61 (663)
++++|+| |||||++.+..
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 3566776 99999999987
No 348
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=58.74 E-value=4.4 Score=38.29 Aligned_cols=20 Identities=15% Similarity=0.190 Sum_probs=16.5
Q ss_pred EEEEEec----chhhHHHHHhcCC
Q 037018 44 QFLTAVA----YKTAFVADIYNNN 63 (663)
Q Consensus 44 ~vi~i~G----GKTtla~~v~~~~ 63 (663)
.+++|+| |||||++.+..-.
T Consensus 32 e~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 32 EFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Confidence 5678888 9999999998743
No 349
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=58.67 E-value=4.3 Score=38.78 Aligned_cols=19 Identities=11% Similarity=0.058 Sum_probs=16.3
Q ss_pred eEEEEEec----chhhHHHHHhc
Q 037018 43 LQFLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 43 ~~vi~i~G----GKTtla~~v~~ 61 (663)
-.+|+|.| ||||+++.+.+
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~ 49 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAE 49 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35788888 99999999986
No 350
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=58.58 E-value=12 Score=39.01 Aligned_cols=43 Identities=9% Similarity=-0.118 Sum_probs=29.3
Q ss_pred ccccchhhcHHHHHHHHhc---C-------CCCceEEEEEec----chhhHHHHHhc
Q 037018 19 CSSKTVKVKVKAVLVWLFM---L-------DSMWLQFLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 19 ~~~~G~~~~~~~i~~~L~~---~-------~~~~~~vi~i~G----GKTtla~~v~~ 61 (663)
..+.|.++.+++|.+.+.- . +....+-|=++| |||+||++|.+
T Consensus 209 ~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~ 265 (467)
T 4b4t_H 209 SDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVAN 265 (467)
T ss_dssp SSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHh
Confidence 3678999999888876521 0 111223344566 99999999999
No 351
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=58.52 E-value=3.9 Score=36.57 Aligned_cols=19 Identities=21% Similarity=0.296 Sum_probs=16.5
Q ss_pred eEEEEEec----chhhHHHHHhc
Q 037018 43 LQFLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 43 ~~vi~i~G----GKTtla~~v~~ 61 (663)
..+++|+| |||||++++..
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~ 28 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIP 28 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHH
Confidence 56788888 99999999987
No 352
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=58.48 E-value=4.6 Score=36.29 Aligned_cols=18 Identities=17% Similarity=0.126 Sum_probs=15.4
Q ss_pred EEEEEec----chhhHHHHHhc
Q 037018 44 QFLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 44 ~vi~i~G----GKTtla~~v~~ 61 (663)
.+|+|.| ||||+|+.+.+
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5677777 99999999987
No 353
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=58.40 E-value=4.8 Score=39.17 Aligned_cols=20 Identities=20% Similarity=0.112 Sum_probs=16.9
Q ss_pred ceEEEEEec----chhhHHHHHhc
Q 037018 42 WLQFLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 42 ~~~vi~i~G----GKTtla~~v~~ 61 (663)
...+|+|.| ||||+|+.+..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 457888888 99999999874
No 354
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=58.31 E-value=3.8 Score=38.17 Aligned_cols=18 Identities=17% Similarity=0.163 Sum_probs=15.1
Q ss_pred EEEEEec----chhhHHHHHhc
Q 037018 44 QFLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 44 ~vi~i~G----GKTtla~~v~~ 61 (663)
.+++|+| |||||++.+..
T Consensus 24 ~~~~lvGpsGsGKSTLl~~L~g 45 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTLIKKLLN 45 (218)
T ss_dssp CCEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4577777 99999999987
No 355
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=58.28 E-value=7.7 Score=39.18 Aligned_cols=31 Identities=10% Similarity=-0.016 Sum_probs=21.7
Q ss_pred HHHHHHhcCCCCceEEEEEec----chhhHHHHHhc
Q 037018 30 AVLVWLFMLDSMWLQFLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 30 ~i~~~L~~~~~~~~~vi~i~G----GKTtla~~v~~ 61 (663)
++...+..... +..+|+|+| ||||++.++..
T Consensus 67 ~~~~~~~~~~~-~~~~I~i~G~~G~GKSTl~~~L~~ 101 (355)
T 3p32_A 67 QLLLRLLPDSG-NAHRVGITGVPGVGKSTAIEALGM 101 (355)
T ss_dssp HHHHHHGGGCC-CSEEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHhHhhcC-CceEEEEECCCCCCHHHHHHHHHH
Confidence 34444433222 578899999 99999999875
No 356
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=58.24 E-value=34 Score=31.75 Aligned_cols=49 Identities=10% Similarity=0.163 Sum_probs=27.4
Q ss_pred hhHHHHHHHHhhcCCcEEEEEeCCCCC---h----hhHHHHHhhCCCCCCCceEEEEEeCCC
Q 037018 125 YKLKTIILRDYLTNKKDFIVLDDVFDD---R----EIWNDLEKFLPDNQNGSRVLILVTDPF 179 (663)
Q Consensus 125 ~~l~~~~l~~~L~~kr~LlVLDdv~~~---~----~~~~~l~~~~~~~~~gskIiiT~r~~~ 179 (663)
+.+ ...+++.+.+-+ +||+|.+... . ..+..+.... ++-++++.+++-.
T Consensus 164 g~l-~~~l~~~l~~~~-~lVlDEah~~~~~~~~~~~~l~~i~~~~----~~~~~il~SAT~~ 219 (235)
T 3llm_A 164 GVL-LRKLEAGIRGIS-HVIVDEIHERDINTDFLLVVLRDVVQAY----PEVRIVLMSATID 219 (235)
T ss_dssp HHH-HHHHHHCCTTCC-EEEECCTTSCCHHHHHHHHHHHHHHHHC----TTSEEEEEECSSC
T ss_pred HHH-HHHHHhhhcCCc-EEEEECCccCCcchHHHHHHHHHHHhhC----CCCeEEEEecCCC
Confidence 444 455555454444 6799999761 1 2334444433 3567888877644
No 357
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=58.17 E-value=4.4 Score=36.37 Aligned_cols=17 Identities=6% Similarity=-0.097 Sum_probs=13.9
Q ss_pred EEEEec----chhhHHHHHhc
Q 037018 45 FLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 45 vi~i~G----GKTtla~~v~~ 61 (663)
+|.|.| ||||+|+.+.+
T Consensus 5 ~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 5 VVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 455555 99999999988
No 358
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=58.15 E-value=4.5 Score=38.32 Aligned_cols=20 Identities=25% Similarity=0.170 Sum_probs=16.8
Q ss_pred EEEEEec----chhhHHHHHhcCC
Q 037018 44 QFLTAVA----YKTAFVADIYNNN 63 (663)
Q Consensus 44 ~vi~i~G----GKTtla~~v~~~~ 63 (663)
.+++|+| |||||.+.+..-.
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 4688888 9999999998854
No 359
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=58.10 E-value=4.3 Score=36.75 Aligned_cols=18 Identities=6% Similarity=0.097 Sum_probs=14.4
Q ss_pred EEEEEec----chhhHHHHHhc
Q 037018 44 QFLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 44 ~vi~i~G----GKTtla~~v~~ 61 (663)
.+|+|.| ||||+|+.+..
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3455655 99999999988
No 360
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=58.09 E-value=3.8 Score=38.43 Aligned_cols=18 Identities=17% Similarity=0.163 Sum_probs=12.3
Q ss_pred EEEEEec----chhhHHHHHh-c
Q 037018 44 QFLTAVA----YKTAFVADIY-N 61 (663)
Q Consensus 44 ~vi~i~G----GKTtla~~v~-~ 61 (663)
.+++|+| ||||+++.+. .
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~ 50 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEK 50 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC-
T ss_pred CEEEEECCCCCCHHHHHHHHHhc
Confidence 5788888 9999999999 6
No 361
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=57.79 E-value=22 Score=36.75 Aligned_cols=20 Identities=15% Similarity=0.014 Sum_probs=17.5
Q ss_pred ceEEEEEec----chhhHHHHHhc
Q 037018 42 WLQFLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 42 ~~~vi~i~G----GKTtla~~v~~ 61 (663)
+..||.++| ||||++.++..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~ 119 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAY 119 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 468999999 99999999875
No 362
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=57.72 E-value=30 Score=36.89 Aligned_cols=44 Identities=9% Similarity=0.047 Sum_probs=27.9
Q ss_pred EEEEEec----chhhHHHHHhcCCCccccCCCCccccCCceeeccCCCcceEeCCCcchhHHHHHHHH
Q 037018 44 QFLTAVA----YKTAFVADIYNNNVDLSAMNPKLRVPKRFINKAFPVAFPVDVNCACNAQLNHILDDI 107 (663)
Q Consensus 44 ~vi~i~G----GKTtla~~v~~~~~~~~~~~~~~~~~~~F~~~~~~~~~~v~vs~~~~~~~~~l~~~i 107 (663)
+-++|+| |||+|++.+.+.. +-+.+++ +-+.+..++ ..++.+++
T Consensus 228 qr~~I~g~~g~GKT~L~~~ia~~~--------------~~~~~V~-----~~iGER~~E-v~e~~~~~ 275 (588)
T 3mfy_A 228 GTAAIPGPAGSGKTVTQHQLAKWS--------------DAQVVIY-----IGCGERGNE-MTDVLEEF 275 (588)
T ss_dssp CEEEECSCCSHHHHHHHHHHHHHS--------------SCSEEEE-----EECCSSSSH-HHHHHHHT
T ss_pred CeEEeecCCCCCHHHHHHHHHhcc--------------CCCEEEE-----EEecccHHH-HHHHHHHH
Confidence 3456666 9999999998833 2246777 777766551 34444443
No 363
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=57.69 E-value=4.6 Score=38.86 Aligned_cols=20 Identities=15% Similarity=0.198 Sum_probs=16.6
Q ss_pred EEEEEec----chhhHHHHHhcCC
Q 037018 44 QFLTAVA----YKTAFVADIYNNN 63 (663)
Q Consensus 44 ~vi~i~G----GKTtla~~v~~~~ 63 (663)
.+++|+| |||||++.+..-.
T Consensus 33 e~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 33 DVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 5677888 9999999998743
No 364
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=57.51 E-value=4.7 Score=39.14 Aligned_cols=48 Identities=19% Similarity=0.299 Sum_probs=27.7
Q ss_pred HHHHHhhcCCcEEEEEeCCCC--ChhhHHHHHhhCCCC--CCCceEEEEEeC
Q 037018 130 IILRDYLTNKKDFIVLDDVFD--DREIWNDLEKFLPDN--QNGSRVLILVTD 177 (663)
Q Consensus 130 ~~l~~~L~~kr~LlVLDdv~~--~~~~~~~l~~~~~~~--~~gskIiiT~r~ 177 (663)
-.+-+.|-.+.=+|+||.--. |...-..+...+..- ..|.-||++|-+
T Consensus 152 v~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd 203 (275)
T 3gfo_A 152 VAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHD 203 (275)
T ss_dssp HHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESC
T ss_pred HHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecC
Confidence 445566777778889999877 544444444433321 125555555543
No 365
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=57.49 E-value=3.9 Score=36.65 Aligned_cols=17 Identities=12% Similarity=0.065 Sum_probs=13.9
Q ss_pred EEEEec----chhhHHHHHhc
Q 037018 45 FLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 45 vi~i~G----GKTtla~~v~~ 61 (663)
.|.+.| ||||+|+.+..
T Consensus 7 ~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 7 NIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 455666 99999999987
No 366
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=57.35 E-value=4.7 Score=38.65 Aligned_cols=20 Identities=10% Similarity=0.016 Sum_probs=16.7
Q ss_pred EEEEEec----chhhHHHHHhcCC
Q 037018 44 QFLTAVA----YKTAFVADIYNNN 63 (663)
Q Consensus 44 ~vi~i~G----GKTtla~~v~~~~ 63 (663)
.+++|+| |||||++.+..-.
T Consensus 34 e~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 5788888 9999999998743
No 367
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=57.31 E-value=4.6 Score=36.88 Aligned_cols=17 Identities=12% Similarity=0.077 Sum_probs=15.5
Q ss_pred EEEEec----chhhHHHHHhc
Q 037018 45 FLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 45 vi~i~G----GKTtla~~v~~ 61 (663)
+|+|.| ||||+|+.+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 788888 99999999987
No 368
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=57.30 E-value=5.9 Score=42.08 Aligned_cols=45 Identities=9% Similarity=-0.094 Sum_probs=30.1
Q ss_pred ccccccchhhcHHHHHHHHhc--CC--------CCceEEEEEec----chhhHHHHHhcC
Q 037018 17 TSCSSKTVKVKVKAVLVWLFM--LD--------SMWLQFLTAVA----YKTAFVADIYNN 62 (663)
Q Consensus 17 ~~~~~~G~~~~~~~i~~~L~~--~~--------~~~~~vi~i~G----GKTtla~~v~~~ 62 (663)
.-..++|.++.++++.++... .. ..... |.|+| ||||||++|.+.
T Consensus 29 ~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~G-vLL~GppGtGKTtLaraIa~~ 87 (499)
T 2dhr_A 29 TFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKG-VLLVGPPGVGKTHLARAVAGE 87 (499)
T ss_dssp CTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSE-EEEECSSSSSHHHHHHHHHHH
T ss_pred CHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCce-EEEECCCCCCHHHHHHHHHHH
Confidence 334689998888877766532 10 00112 66777 999999999993
No 369
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=57.18 E-value=7.6 Score=35.93 Aligned_cols=33 Identities=12% Similarity=-0.009 Sum_probs=22.4
Q ss_pred cHHHHHHHHhcCCCCceEEEEEec----chhhHHHHHhcC
Q 037018 27 KVKAVLVWLFMLDSMWLQFLTAVA----YKTAFVADIYNN 62 (663)
Q Consensus 27 ~~~~i~~~L~~~~~~~~~vi~i~G----GKTtla~~v~~~ 62 (663)
..+++...+... +..+|.|+| |||||+.++...
T Consensus 25 ~a~~~r~~~~~~---~~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 25 LADKNRKLLNKH---GVVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp HHHHHHHHHHHT---TCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC---CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 344444444332 467788888 999999998873
No 370
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=57.16 E-value=4.8 Score=38.39 Aligned_cols=19 Identities=5% Similarity=0.010 Sum_probs=16.4
Q ss_pred EEEEEec----chhhHHHHHhcC
Q 037018 44 QFLTAVA----YKTAFVADIYNN 62 (663)
Q Consensus 44 ~vi~i~G----GKTtla~~v~~~ 62 (663)
.+++|+| |||||++.+..-
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 4678888 999999999984
No 371
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=57.09 E-value=9.1 Score=38.67 Aligned_cols=21 Identities=14% Similarity=0.063 Sum_probs=17.8
Q ss_pred ceEEEEEec----chhhHHHHHhcC
Q 037018 42 WLQFLTAVA----YKTAFVADIYNN 62 (663)
Q Consensus 42 ~~~vi~i~G----GKTtla~~v~~~ 62 (663)
+-.+++|+| ||||+++.+..-
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~ 180 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHR 180 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhh
Confidence 457899999 999999998873
No 372
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=57.01 E-value=4.1 Score=37.88 Aligned_cols=50 Identities=20% Similarity=0.226 Sum_probs=28.1
Q ss_pred HHHHHhhcCCcEEEEEeCCCC--ChhhHHHHHhhCCCC-CCCceEEEEEeCCC
Q 037018 130 IILRDYLTNKKDFIVLDDVFD--DREIWNDLEKFLPDN-QNGSRVLILVTDPF 179 (663)
Q Consensus 130 ~~l~~~L~~kr~LlVLDdv~~--~~~~~~~l~~~~~~~-~~gskIiiT~r~~~ 179 (663)
-.+-+.+-.+.=+++||+.-. |....+.+...+... ..|.-||++|.+..
T Consensus 142 v~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~ 194 (214)
T 1sgw_A 142 VQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREEL 194 (214)
T ss_dssp HHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCC
T ss_pred HHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 345566666777889999877 544444444333211 12555666665543
No 373
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=56.93 E-value=4.8 Score=38.81 Aligned_cols=20 Identities=5% Similarity=0.100 Sum_probs=16.3
Q ss_pred EEEEEec----chhhHHHHHhcCC
Q 037018 44 QFLTAVA----YKTAFVADIYNNN 63 (663)
Q Consensus 44 ~vi~i~G----GKTtla~~v~~~~ 63 (663)
.+++|+| |||||++.+..-.
T Consensus 38 e~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 38 EMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp CEEEEECCTTSCHHHHHHHHTSSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Confidence 4677777 9999999998743
No 374
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=56.91 E-value=4.7 Score=36.40 Aligned_cols=17 Identities=18% Similarity=0.149 Sum_probs=14.3
Q ss_pred EEEEec----chhhHHHHHhc
Q 037018 45 FLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 45 vi~i~G----GKTtla~~v~~ 61 (663)
+|+|.| ||||+|+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 466666 99999999988
No 375
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=56.85 E-value=5.2 Score=35.91 Aligned_cols=19 Identities=11% Similarity=-0.034 Sum_probs=15.4
Q ss_pred eEEEEEec----chhhHHHHHhc
Q 037018 43 LQFLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 43 ~~vi~i~G----GKTtla~~v~~ 61 (663)
-.+|.+.| ||||+|+.+..
T Consensus 13 ~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 35666666 99999999988
No 376
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=56.78 E-value=4.9 Score=38.79 Aligned_cols=47 Identities=9% Similarity=0.092 Sum_probs=27.4
Q ss_pred HHHHhhcCCcEEEEEeCCCC--ChhhHHHHHhhCCC-CCCCceEEEEEeC
Q 037018 131 ILRDYLTNKKDFIVLDDVFD--DREIWNDLEKFLPD-NQNGSRVLILVTD 177 (663)
Q Consensus 131 ~l~~~L~~kr~LlVLDdv~~--~~~~~~~l~~~~~~-~~~gskIiiT~r~ 177 (663)
.+-+.|-.+.=+++||.--. |...-+.+...+.. ...|.-||++|-+
T Consensus 174 ~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd 223 (267)
T 2zu0_C 174 DILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHY 223 (267)
T ss_dssp HHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSS
T ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeC
Confidence 34455555666889999887 65554444443332 1236666666554
No 377
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=56.76 E-value=4.4 Score=36.62 Aligned_cols=18 Identities=17% Similarity=0.123 Sum_probs=14.4
Q ss_pred EEEEEec----chhhHHHHHhc
Q 037018 44 QFLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 44 ~vi~i~G----GKTtla~~v~~ 61 (663)
.+|+|.| ||||+|+.+.+
T Consensus 10 ~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3555666 99999999987
No 378
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=56.73 E-value=4.9 Score=38.69 Aligned_cols=47 Identities=11% Similarity=0.309 Sum_probs=26.5
Q ss_pred HHHHhhcCCcEEEEEeCCCC--ChhhHHHHHhhCCC-CCCCceEEEEEeC
Q 037018 131 ILRDYLTNKKDFIVLDDVFD--DREIWNDLEKFLPD-NQNGSRVLILVTD 177 (663)
Q Consensus 131 ~l~~~L~~kr~LlVLDdv~~--~~~~~~~l~~~~~~-~~~gskIiiT~r~ 177 (663)
.+-+.|-.+.=+++||+--. |...-..+...+.. ...|.-||++|-+
T Consensus 169 ~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd 218 (263)
T 2olj_A 169 AIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHE 218 (263)
T ss_dssp HHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSC
T ss_pred HHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCC
Confidence 45566666777889999877 54444444433321 1125556666543
No 379
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=56.70 E-value=5 Score=40.14 Aligned_cols=19 Identities=16% Similarity=0.219 Sum_probs=16.7
Q ss_pred EEEEEec----chhhHHHHHhcC
Q 037018 44 QFLTAVA----YKTAFVADIYNN 62 (663)
Q Consensus 44 ~vi~i~G----GKTtla~~v~~~ 62 (663)
.+|+|.| ||||||+.+...
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~ 30 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKK 30 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHHH
Confidence 5889999 999999999883
No 380
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=56.69 E-value=5.3 Score=36.94 Aligned_cols=18 Identities=6% Similarity=0.056 Sum_probs=15.6
Q ss_pred EEEEEec----chhhHHHHHhc
Q 037018 44 QFLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 44 ~vi~i~G----GKTtla~~v~~ 61 (663)
.+|+|.| ||||+++.+..
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5788888 99999999866
No 381
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=56.66 E-value=4.9 Score=38.25 Aligned_cols=20 Identities=15% Similarity=0.062 Sum_probs=16.6
Q ss_pred EEEEEec----chhhHHHHHhcCC
Q 037018 44 QFLTAVA----YKTAFVADIYNNN 63 (663)
Q Consensus 44 ~vi~i~G----GKTtla~~v~~~~ 63 (663)
.+++|+| |||||++.+..-.
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 4677888 9999999998843
No 382
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=56.53 E-value=5 Score=35.22 Aligned_cols=16 Identities=6% Similarity=-0.004 Sum_probs=13.2
Q ss_pred EEEec----chhhHHHHHhc
Q 037018 46 LTAVA----YKTAFVADIYN 61 (663)
Q Consensus 46 i~i~G----GKTtla~~v~~ 61 (663)
|+|.| ||||+|+.+.+
T Consensus 3 I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 3 IYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEESCTTSCHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 45555 99999999988
No 383
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=56.53 E-value=5 Score=38.47 Aligned_cols=48 Identities=19% Similarity=0.304 Sum_probs=27.1
Q ss_pred HHHHHhhcCCcEEEEEeCCCC--ChhhHHHHHhhCCC-CCCCceEEEEEeC
Q 037018 130 IILRDYLTNKKDFIVLDDVFD--DREIWNDLEKFLPD-NQNGSRVLILVTD 177 (663)
Q Consensus 130 ~~l~~~L~~kr~LlVLDdv~~--~~~~~~~l~~~~~~-~~~gskIiiT~r~ 177 (663)
-.+-+.|-.+.=+++||.--. |...-..+...+.. ...|.-||++|-+
T Consensus 155 v~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd 205 (256)
T 1vpl_A 155 LLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHN 205 (256)
T ss_dssp HHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECC
T ss_pred HHHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCC
Confidence 345566667777889999887 54444444433321 1235556666543
No 384
>3nrs_A Dihydrofolate:folylpolyglutamate synthetase; structural genomics, center for structural genomics of infec diseases, csgid; HET: TLA MES; 1.80A {Yersinia pestis} PDB: 3n2a_A* 3pyz_A* 3qcz_A*
Probab=56.44 E-value=7.7 Score=40.48 Aligned_cols=40 Identities=10% Similarity=-0.033 Sum_probs=24.5
Q ss_pred cchhhcHHHHHHHHhcC--CCCceEEEEEec--chhhHHHHHhc
Q 037018 22 KTVKVKVKAVLVWLFML--DSMWLQFLTAVA--YKTAFVADIYN 61 (663)
Q Consensus 22 ~G~~~~~~~i~~~L~~~--~~~~~~vi~i~G--GKTtla~~v~~ 61 (663)
.|++-..+++..+|..- +....++|+|.| ||||.+..+..
T Consensus 29 ~~~~~gL~r~~~ll~~lg~p~~~~~vI~VtGTNGKgSt~~~l~~ 72 (437)
T 3nrs_A 29 QPIELGLERVKQVAERLDLLKPAPKIFTVAGTNGKGTTCCTLEA 72 (437)
T ss_dssp -----CCHHHHHHHHHTTCSCSSSEEEEEECSSSHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHcCCccccCCEEEEECCcChHHHHHHHHH
Confidence 45554455555555432 233789999999 99998877665
No 385
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=56.38 E-value=3.7 Score=38.00 Aligned_cols=19 Identities=21% Similarity=0.050 Sum_probs=14.5
Q ss_pred eEEEEEec-chhhHHHHHhc
Q 037018 43 LQFLTAVA-YKTAFVADIYN 61 (663)
Q Consensus 43 ~~vi~i~G-GKTtla~~v~~ 61 (663)
+-+.|..| ||||+|+.+.+
T Consensus 3 I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 3 IILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 34455555 99999999987
No 386
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=56.28 E-value=5.4 Score=35.52 Aligned_cols=18 Identities=11% Similarity=-0.101 Sum_probs=15.0
Q ss_pred EEEEEec----chhhHHHHHhc
Q 037018 44 QFLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 44 ~vi~i~G----GKTtla~~v~~ 61 (663)
.+|++.| ||||+++.+..
T Consensus 6 ~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 6 CTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4566777 99999999987
No 387
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=56.24 E-value=5.1 Score=37.82 Aligned_cols=19 Identities=21% Similarity=0.086 Sum_probs=15.6
Q ss_pred eEEEEEec----chhhHHHHHhc
Q 037018 43 LQFLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 43 ~~vi~i~G----GKTtla~~v~~ 61 (663)
=.+++|.| |||||++.+..
T Consensus 30 G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHH
Confidence 36778888 99999998883
No 388
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=56.18 E-value=8.2 Score=40.68 Aligned_cols=20 Identities=15% Similarity=0.026 Sum_probs=17.1
Q ss_pred ceEEEEEec----chhhHHHHHhc
Q 037018 42 WLQFLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 42 ~~~vi~i~G----GKTtla~~v~~ 61 (663)
.-.||+|+| ||||+++.+..
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAg 315 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLAR 315 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHH
Confidence 456888888 99999999876
No 389
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=55.79 E-value=8.5 Score=38.37 Aligned_cols=21 Identities=24% Similarity=0.055 Sum_probs=17.8
Q ss_pred ceEEEEEec----chhhHHHHHhcC
Q 037018 42 WLQFLTAVA----YKTAFVADIYNN 62 (663)
Q Consensus 42 ~~~vi~i~G----GKTtla~~v~~~ 62 (663)
+-.+++|+| ||||+++.+...
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~ 152 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANW 152 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 457899999 999999998873
No 390
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=55.76 E-value=3.7 Score=38.22 Aligned_cols=19 Identities=21% Similarity=-0.066 Sum_probs=14.8
Q ss_pred eEEEEEec-chhhHHHHHhc
Q 037018 43 LQFLTAVA-YKTAFVADIYN 61 (663)
Q Consensus 43 ~~vi~i~G-GKTtla~~v~~ 61 (663)
+-++|..| ||||+|+.+.+
T Consensus 8 I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 8 VMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 44555555 99999999988
No 391
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=55.62 E-value=5.2 Score=38.70 Aligned_cols=47 Identities=19% Similarity=0.311 Sum_probs=27.1
Q ss_pred HHHHHhhcCCcEEEEEeCCCC--ChhhHHHHHhhCCCC--CCCceEEEEEe
Q 037018 130 IILRDYLTNKKDFIVLDDVFD--DREIWNDLEKFLPDN--QNGSRVLILVT 176 (663)
Q Consensus 130 ~~l~~~L~~kr~LlVLDdv~~--~~~~~~~l~~~~~~~--~~gskIiiT~r 176 (663)
-.+-+.|-.+.=+++||+.-. |...-..+...+... ..|.-||++|-
T Consensus 165 v~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtH 215 (271)
T 2ixe_A 165 VALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQ 215 (271)
T ss_dssp HHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECS
T ss_pred HHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeC
Confidence 345566666777889999887 655544444443321 22555555543
No 392
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=55.40 E-value=5.6 Score=36.39 Aligned_cols=18 Identities=6% Similarity=-0.016 Sum_probs=15.0
Q ss_pred EEEEEec----chhhHHHHHhc
Q 037018 44 QFLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 44 ~vi~i~G----GKTtla~~v~~ 61 (663)
.+|.|.| ||||+|+.+.+
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 4566666 99999999988
No 393
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=55.39 E-value=5.3 Score=38.37 Aligned_cols=20 Identities=15% Similarity=0.069 Sum_probs=16.7
Q ss_pred EEEEEec----chhhHHHHHhcCC
Q 037018 44 QFLTAVA----YKTAFVADIYNNN 63 (663)
Q Consensus 44 ~vi~i~G----GKTtla~~v~~~~ 63 (663)
.+++|+| |||||++.+..-.
T Consensus 47 e~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 47 TTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhccC
Confidence 4678888 9999999998843
No 394
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=55.31 E-value=5.8 Score=39.41 Aligned_cols=21 Identities=19% Similarity=0.145 Sum_probs=18.3
Q ss_pred ceEEEEEec----chhhHHHHHhcC
Q 037018 42 WLQFLTAVA----YKTAFVADIYNN 62 (663)
Q Consensus 42 ~~~vi~i~G----GKTtla~~v~~~ 62 (663)
++.+++|.| |||||.+.+...
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHS
T ss_pred cccEEEEEecCCCCHHHHHHHHHhh
Confidence 578888988 999999999963
No 395
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=55.24 E-value=5.3 Score=38.50 Aligned_cols=49 Identities=22% Similarity=0.397 Sum_probs=28.7
Q ss_pred HHHHHhhcCCcEEEEEeCCCC--ChhhHHHHHhhCCCC-CCCceEEEEEeCC
Q 037018 130 IILRDYLTNKKDFIVLDDVFD--DREIWNDLEKFLPDN-QNGSRVLILVTDP 178 (663)
Q Consensus 130 ~~l~~~L~~kr~LlVLDdv~~--~~~~~~~l~~~~~~~-~~gskIiiT~r~~ 178 (663)
-.+-+.|-.+.=+++||..-. |...-..+...+... ..|.-||++|.+.
T Consensus 147 v~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~ 198 (266)
T 2yz2_A 147 VAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDI 198 (266)
T ss_dssp HHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCC
T ss_pred HHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 345566667777889999887 555444444433321 1255566665543
No 396
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=55.23 E-value=17 Score=37.70 Aligned_cols=43 Identities=5% Similarity=-0.141 Sum_probs=29.7
Q ss_pred ccccchhhcHHHHHHHHhc---C-------CCCceEEEEEec----chhhHHHHHhc
Q 037018 19 CSSKTVKVKVKAVLVWLFM---L-------DSMWLQFLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 19 ~~~~G~~~~~~~i~~~L~~---~-------~~~~~~vi~i~G----GKTtla~~v~~ 61 (663)
..+.|.++.+++|.+.+.- . +....+-|=++| |||+||++|.+
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~ 237 (437)
T 4b4t_L 181 DGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAA 237 (437)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHH
T ss_pred hHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHH
Confidence 4678999988888876632 1 111223444556 99999999999
No 397
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=55.21 E-value=11 Score=36.78 Aligned_cols=20 Identities=15% Similarity=0.042 Sum_probs=16.1
Q ss_pred ceEEEEEec----chhhHHHHHhc
Q 037018 42 WLQFLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 42 ~~~vi~i~G----GKTtla~~v~~ 61 (663)
.-.+|-|.| ||||+|+.+..
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345666777 99999999987
No 398
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=55.17 E-value=5.8 Score=35.48 Aligned_cols=18 Identities=11% Similarity=0.001 Sum_probs=14.7
Q ss_pred EEEEEec----chhhHHHHHhc
Q 037018 44 QFLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 44 ~vi~i~G----GKTtla~~v~~ 61 (663)
.+|++.| ||||+|+.+.+
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3566666 99999999987
No 399
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=55.14 E-value=26 Score=36.32 Aligned_cols=20 Identities=30% Similarity=0.142 Sum_probs=17.2
Q ss_pred ceEEEEEec----chhhHHHHHhc
Q 037018 42 WLQFLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 42 ~~~vi~i~G----GKTtla~~v~~ 61 (663)
+..||.++| ||||++.++..
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~ 122 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLAR 122 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHH
Confidence 368999999 99999998875
No 400
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=55.08 E-value=4.4 Score=35.96 Aligned_cols=16 Identities=6% Similarity=0.169 Sum_probs=13.2
Q ss_pred EEEec----chhhHHHHHhc
Q 037018 46 LTAVA----YKTAFVADIYN 61 (663)
Q Consensus 46 i~i~G----GKTtla~~v~~ 61 (663)
|.|.| ||||+|+.+..
T Consensus 7 i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 7 IVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp EEEECCTTSCHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 55555 99999999988
No 401
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=55.07 E-value=5.7 Score=35.73 Aligned_cols=18 Identities=11% Similarity=0.159 Sum_probs=14.2
Q ss_pred EEEEEec----chhhHHHHHhc
Q 037018 44 QFLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 44 ~vi~i~G----GKTtla~~v~~ 61 (663)
.+|.|.| ||||+|+.+..
T Consensus 6 ~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3455555 99999999987
No 402
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=55.01 E-value=5.4 Score=38.78 Aligned_cols=20 Identities=10% Similarity=-0.046 Sum_probs=16.5
Q ss_pred EEEEEec----chhhHHHHHhcCC
Q 037018 44 QFLTAVA----YKTAFVADIYNNN 63 (663)
Q Consensus 44 ~vi~i~G----GKTtla~~v~~~~ 63 (663)
.+++|+| |||||++.+..-.
T Consensus 48 e~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 48 DKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 4677777 9999999998854
No 403
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=54.83 E-value=5.2 Score=36.65 Aligned_cols=18 Identities=11% Similarity=0.067 Sum_probs=14.6
Q ss_pred EEEEEec----chhhHHHHHhc
Q 037018 44 QFLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 44 ~vi~i~G----GKTtla~~v~~ 61 (663)
.+|+|.| ||||+|+.+.+
T Consensus 11 ~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 11 KFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 3566666 99999999987
No 404
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=54.81 E-value=4.2 Score=37.70 Aligned_cols=19 Identities=21% Similarity=0.023 Sum_probs=14.5
Q ss_pred eEEEEEec-chhhHHHHHhc
Q 037018 43 LQFLTAVA-YKTAFVADIYN 61 (663)
Q Consensus 43 ~~vi~i~G-GKTtla~~v~~ 61 (663)
+-++|..| ||||+|+.+..
T Consensus 8 I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 8 LILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp EEEEECTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 44455555 99999999987
No 405
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=54.45 E-value=4.2 Score=36.39 Aligned_cols=16 Identities=13% Similarity=0.023 Sum_probs=13.5
Q ss_pred EEEec----chhhHHHHHhc
Q 037018 46 LTAVA----YKTAFVADIYN 61 (663)
Q Consensus 46 i~i~G----GKTtla~~v~~ 61 (663)
|+|.| ||||+|+.+..
T Consensus 5 I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 5 AVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 55666 99999999987
No 406
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=54.31 E-value=5.5 Score=36.25 Aligned_cols=17 Identities=6% Similarity=-0.062 Sum_probs=14.3
Q ss_pred EEEEec----chhhHHHHHhc
Q 037018 45 FLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 45 vi~i~G----GKTtla~~v~~ 61 (663)
+|.|.| ||||+|+.+..
T Consensus 22 ~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 22 RVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 566666 99999999987
No 407
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=54.29 E-value=14 Score=38.23 Aligned_cols=43 Identities=7% Similarity=-0.072 Sum_probs=29.2
Q ss_pred ccccchhhcHHHHHHHHhc---CC-------CCceEEEEEec----chhhHHHHHhc
Q 037018 19 CSSKTVKVKVKAVLVWLFM---LD-------SMWLQFLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 19 ~~~~G~~~~~~~i~~~L~~---~~-------~~~~~vi~i~G----GKTtla~~v~~ 61 (663)
..+-|.++.+++|.+.+.. .+ ....+=|=++| |||.||++|.+
T Consensus 182 ~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~ 238 (437)
T 4b4t_I 182 SDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVAN 238 (437)
T ss_dssp GGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHH
T ss_pred eecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHH
Confidence 4577898888888876632 11 11223344555 99999999999
No 408
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=54.02 E-value=5.8 Score=37.81 Aligned_cols=20 Identities=20% Similarity=0.257 Sum_probs=16.4
Q ss_pred EEEEEec----chhhHHHHHhcCC
Q 037018 44 QFLTAVA----YKTAFVADIYNNN 63 (663)
Q Consensus 44 ~vi~i~G----GKTtla~~v~~~~ 63 (663)
.+++|+| |||||++.+..-.
T Consensus 27 e~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 4677777 9999999998843
No 409
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=53.88 E-value=61 Score=30.16 Aligned_cols=28 Identities=18% Similarity=0.342 Sum_probs=19.4
Q ss_pred hcCCcEEEEEeCCCC-ChhhHHHHHhhCC
Q 037018 136 LTNKKDFIVLDDVFD-DREIWNDLEKFLP 163 (663)
Q Consensus 136 L~~kr~LlVLDdv~~-~~~~~~~l~~~~~ 163 (663)
+.++--+||+|++.. ....+..+...++
T Consensus 189 ~~~~~~llIiDEaH~l~~~~~~~i~~~~~ 217 (237)
T 2fz4_A 189 LGNRFMLLIFDEVHHLPAESYVQIAQMSI 217 (237)
T ss_dssp HTTTCSEEEEECSSCCCTTTHHHHHHTCC
T ss_pred hcccCCEEEEECCccCCChHHHHHHHhcc
Confidence 334455899999987 4556777777664
No 410
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=53.72 E-value=5.4 Score=37.17 Aligned_cols=21 Identities=10% Similarity=0.156 Sum_probs=17.1
Q ss_pred eEEEEEec----chhhHHHHHhcCC
Q 037018 43 LQFLTAVA----YKTAFVADIYNNN 63 (663)
Q Consensus 43 ~~vi~i~G----GKTtla~~v~~~~ 63 (663)
-.+++|+| |||||++.+....
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHhccC
Confidence 35778888 9999999998843
No 411
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=53.63 E-value=5.3 Score=36.55 Aligned_cols=21 Identities=5% Similarity=0.034 Sum_probs=17.2
Q ss_pred ceEEEEEec----chhhHHHHHhcC
Q 037018 42 WLQFLTAVA----YKTAFVADIYNN 62 (663)
Q Consensus 42 ~~~vi~i~G----GKTtla~~v~~~ 62 (663)
+-++|+|+| |||||++.+...
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhh
Confidence 346778888 999999999873
No 412
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=53.59 E-value=5.6 Score=36.49 Aligned_cols=18 Identities=6% Similarity=0.043 Sum_probs=14.6
Q ss_pred EEEEEec----chhhHHHHHhc
Q 037018 44 QFLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 44 ~vi~i~G----GKTtla~~v~~ 61 (663)
.+|+|.| ||||+|+.+.+
T Consensus 10 ~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 10 ALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3566666 99999999988
No 413
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=53.53 E-value=4.6 Score=36.02 Aligned_cols=18 Identities=11% Similarity=0.045 Sum_probs=14.1
Q ss_pred EEEEEec----chhhHHHHHhc
Q 037018 44 QFLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 44 ~vi~i~G----GKTtla~~v~~ 61 (663)
.+|.|.| ||||+|+.+.+
T Consensus 12 ~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEeCCCCCHHHHHHHHHH
Confidence 3455555 99999999987
No 414
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=53.50 E-value=6 Score=37.83 Aligned_cols=48 Identities=17% Similarity=0.237 Sum_probs=27.2
Q ss_pred HHHHHhhcCCcEEEEEeCCCC--ChhhHHHHHhhCCC--CCCCceEEEEEeC
Q 037018 130 IILRDYLTNKKDFIVLDDVFD--DREIWNDLEKFLPD--NQNGSRVLILVTD 177 (663)
Q Consensus 130 ~~l~~~L~~kr~LlVLDdv~~--~~~~~~~l~~~~~~--~~~gskIiiT~r~ 177 (663)
-.+-+.|-.+.=+++||.--. |...-+.+...+.. ...|.-||++|.+
T Consensus 137 v~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd 188 (253)
T 2nq2_C 137 ILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQ 188 (253)
T ss_dssp HHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESC
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 345566666777889999887 55444444443331 1225556666543
No 415
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=53.46 E-value=5.4 Score=37.51 Aligned_cols=20 Identities=10% Similarity=-0.150 Sum_probs=17.1
Q ss_pred ceEEEEEec----chhhHHHHHhc
Q 037018 42 WLQFLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 42 ~~~vi~i~G----GKTtla~~v~~ 61 (663)
...+|+|.| ||||+++.+..
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 556788888 99999999987
No 416
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=53.33 E-value=5.2 Score=36.22 Aligned_cols=17 Identities=6% Similarity=0.208 Sum_probs=14.1
Q ss_pred EEEEec----chhhHHHHHhc
Q 037018 45 FLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 45 vi~i~G----GKTtla~~v~~ 61 (663)
.|.|+| |||||++++..
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~ 23 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 355666 99999999987
No 417
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=53.14 E-value=5.5 Score=41.12 Aligned_cols=21 Identities=10% Similarity=0.113 Sum_probs=17.7
Q ss_pred ceEEEEEec----chhhHHHHHhcC
Q 037018 42 WLQFLTAVA----YKTAFVADIYNN 62 (663)
Q Consensus 42 ~~~vi~i~G----GKTtla~~v~~~ 62 (663)
...+++|+| |||||.+.+..-
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~Gl 92 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRGI 92 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCC
Confidence 345888888 999999999983
No 418
>1o5z_A Folylpolyglutamate synthase/dihydrofolate synthas; TM0166, structural genomics, JC protein structure initiative; 2.10A {Thermotoga maritima} SCOP: c.59.1.2 c.72.2.2
Probab=52.91 E-value=7.2 Score=40.75 Aligned_cols=20 Identities=10% Similarity=-0.080 Sum_probs=17.9
Q ss_pred ceEEEEEec--chhhHHHHHhc
Q 037018 42 WLQFLTAVA--YKTAFVADIYN 61 (663)
Q Consensus 42 ~~~vi~i~G--GKTtla~~v~~ 61 (663)
+.++|+|.| ||||.+..+..
T Consensus 51 ~~~vI~VTGTnGKtTT~~~l~~ 72 (442)
T 1o5z_A 51 EYKTIHIGGTNGKGSVANMVSN 72 (442)
T ss_dssp SSEEEEEECSSSHHHHHHHHHH
T ss_pred cCCEEEEECCcCHHHHHHHHHH
Confidence 679999999 99999988776
No 419
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=52.56 E-value=5.5 Score=35.47 Aligned_cols=18 Identities=11% Similarity=-0.051 Sum_probs=12.4
Q ss_pred EEEEEec----chhhHHHHHhc
Q 037018 44 QFLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 44 ~vi~i~G----GKTtla~~v~~ 61 (663)
.+|.|.| ||||+|+.+.+
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CEEEEECCC----CHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3556666 99999999987
No 420
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=52.47 E-value=6.7 Score=36.11 Aligned_cols=18 Identities=6% Similarity=0.045 Sum_probs=14.9
Q ss_pred EEEEEec----chhhHHHHHhc
Q 037018 44 QFLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 44 ~vi~i~G----GKTtla~~v~~ 61 (663)
.+|.|.| ||||+|+.+..
T Consensus 26 ~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 26 LTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4566666 99999999987
No 421
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=52.47 E-value=6.3 Score=35.38 Aligned_cols=18 Identities=17% Similarity=-0.012 Sum_probs=15.2
Q ss_pred EEEEEec----chhhHHHHHhc
Q 037018 44 QFLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 44 ~vi~i~G----GKTtla~~v~~ 61 (663)
.+|+|.| ||||+|+.+.+
T Consensus 11 ~~I~l~G~~GsGKSTv~~~La~ 32 (184)
T 1y63_A 11 INILITGTPGTGKTSMAEMIAA 32 (184)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4577777 99999999988
No 422
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=52.40 E-value=5.2 Score=35.25 Aligned_cols=17 Identities=12% Similarity=-0.046 Sum_probs=13.6
Q ss_pred EEEEec----chhhHHHHHhc
Q 037018 45 FLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 45 vi~i~G----GKTtla~~v~~ 61 (663)
+|.|.| ||||+|+.+.+
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 355555 99999999988
No 423
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=52.17 E-value=9.2 Score=41.79 Aligned_cols=40 Identities=5% Similarity=-0.158 Sum_probs=30.8
Q ss_pred ccccchhhcHHHHHHHHhcCCCCceEEEEEec----chhhHHHHHhcCC
Q 037018 19 CSSKTVKVKVKAVLVWLFMLDSMWLQFLTAVA----YKTAFVADIYNNN 63 (663)
Q Consensus 19 ~~~~G~~~~~~~i~~~L~~~~~~~~~vi~i~G----GKTtla~~v~~~~ 63 (663)
..++|.+.-++.+...+.... .+.|+| ||||||+.+.+..
T Consensus 41 ~~i~G~~~~l~~l~~~i~~g~-----~vll~Gp~GtGKTtlar~ia~~l 84 (604)
T 3k1j_A 41 DQVIGQEHAVEVIKTAANQKR-----HVLLIGEPGTGKSMLGQAMAELL 84 (604)
T ss_dssp HHCCSCHHHHHHHHHHHHTTC-----CEEEECCTTSSHHHHHHHHHHTS
T ss_pred ceEECchhhHhhccccccCCC-----EEEEEeCCCCCHHHHHHHHhccC
Confidence 468898888888887777653 355566 9999999999843
No 424
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=52.14 E-value=6.6 Score=34.98 Aligned_cols=17 Identities=24% Similarity=0.155 Sum_probs=15.1
Q ss_pred EEEEec----chhhHHHHHhc
Q 037018 45 FLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 45 vi~i~G----GKTtla~~v~~ 61 (663)
+.+|+| |||||+++|+-
T Consensus 28 ~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 778888 99999999976
No 425
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=52.13 E-value=5.9 Score=39.05 Aligned_cols=20 Identities=20% Similarity=0.185 Sum_probs=16.6
Q ss_pred EEEEEec----chhhHHHHHhcCC
Q 037018 44 QFLTAVA----YKTAFVADIYNNN 63 (663)
Q Consensus 44 ~vi~i~G----GKTtla~~v~~~~ 63 (663)
.+++|+| |||||++.+..-.
T Consensus 81 e~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 81 QTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp CEEEEESSSCHHHHHHHHHHTTSS
T ss_pred CEEEEECCCCchHHHHHHHHHcCC
Confidence 5678888 9999999998744
No 426
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=51.87 E-value=9.6 Score=39.97 Aligned_cols=43 Identities=14% Similarity=-0.102 Sum_probs=28.0
Q ss_pred ccccchhhcHHHHHHHH---hcCCC--CceEEEEEec-chhhHHHHHhc
Q 037018 19 CSSKTVKVKVKAVLVWL---FMLDS--MWLQFLTAVA-YKTAFVADIYN 61 (663)
Q Consensus 19 ~~~~G~~~~~~~i~~~L---~~~~~--~~~~vi~i~G-GKTtla~~v~~ 61 (663)
..++|.+..++.+..++ ..... ..+-+.|-.| |||++|+++.+
T Consensus 37 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~ 85 (456)
T 2c9o_A 37 SGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQ 85 (456)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHH
Confidence 46899998877655444 33322 1233333334 99999999999
No 427
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=51.46 E-value=6.9 Score=37.56 Aligned_cols=19 Identities=11% Similarity=0.265 Sum_probs=16.6
Q ss_pred eEEEEEec----chhhHHHHHhc
Q 037018 43 LQFLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 43 ~~vi~i~G----GKTtla~~v~~ 61 (663)
-.+++|+| ||||+++.+..
T Consensus 25 g~~v~i~Gp~GsGKSTll~~l~g 47 (261)
T 2eyu_A 25 MGLILVTGPTGSGKSTTIASMID 47 (261)
T ss_dssp SEEEEEECSTTCSHHHHHHHHHH
T ss_pred CCEEEEECCCCccHHHHHHHHHH
Confidence 46788888 99999999887
No 428
>1jbw_A Folylpolyglutamate synthase; FPGS folate AMPPCP ternary complex, ligase; HET: KCX ACQ TMF; 1.85A {Lactobacillus casei} SCOP: c.59.1.2 c.72.2.2 PDB: 1fgs_A* 1jbv_A* 2gca_A 2gc5_A* 2gc6_A* 2gcb_A
Probab=51.27 E-value=6.7 Score=40.80 Aligned_cols=37 Identities=14% Similarity=0.113 Sum_probs=24.9
Q ss_pred hhcHHHHHHHHhcCC--CCceEEEEEec--chhhHHHHHhc
Q 037018 25 KVKVKAVLVWLFMLD--SMWLQFLTAVA--YKTAFVADIYN 61 (663)
Q Consensus 25 ~~~~~~i~~~L~~~~--~~~~~vi~i~G--GKTtla~~v~~ 61 (663)
+-.++++..+|..-. ..+.++|+|.| ||||.+..+..
T Consensus 19 ~~~l~~~~~~l~~lg~p~~~~~vI~VtGTnGKtTT~~~l~~ 59 (428)
T 1jbw_A 19 TGDHRRILTLLHALGNPQQQGRYIHVTGTNGKGSAANAIAH 59 (428)
T ss_dssp CSSCHHHHHHHHHTTCGGGSSCEEEEECSSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHcCCchhcCcEEEEECCCChHHHHHHHHH
Confidence 333445555544322 23678999999 99999988776
No 429
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=51.07 E-value=10 Score=38.59 Aligned_cols=19 Identities=16% Similarity=0.163 Sum_probs=16.4
Q ss_pred eEEEEEec----chhhHHHHHhc
Q 037018 43 LQFLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 43 ~~vi~i~G----GKTtla~~v~~ 61 (663)
-.+++|+| |||||++.+..
T Consensus 169 ~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 169 KRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 45778888 99999999998
No 430
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=50.49 E-value=8.1 Score=34.75 Aligned_cols=22 Identities=14% Similarity=0.237 Sum_probs=17.9
Q ss_pred ceEEEEEec----chhhHHHHHhcCC
Q 037018 42 WLQFLTAVA----YKTAFVADIYNNN 63 (663)
Q Consensus 42 ~~~vi~i~G----GKTtla~~v~~~~ 63 (663)
..-.|+|+| |||||++.+....
T Consensus 28 ~~~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 28 YLFKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCC
Confidence 356678888 9999999998854
No 431
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=50.48 E-value=32 Score=31.66 Aligned_cols=18 Identities=17% Similarity=0.034 Sum_probs=15.3
Q ss_pred EEEEEec----chhhHHHHHhc
Q 037018 44 QFLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 44 ~vi~i~G----GKTtla~~v~~ 61 (663)
.+|.|-| ||||+++.+.+
T Consensus 7 ~~i~~eG~~gsGKsT~~~~l~~ 28 (213)
T 4edh_A 7 LFVTLEGPEGAGKSTNRDYLAE 28 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 5677777 99999999988
No 432
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=50.42 E-value=5.1 Score=36.65 Aligned_cols=18 Identities=11% Similarity=0.159 Sum_probs=14.5
Q ss_pred EEEEEec----chhhHHHHHhc
Q 037018 44 QFLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 44 ~vi~i~G----GKTtla~~v~~ 61 (663)
.+|.|+| ||||+++.+..
T Consensus 13 ~~i~l~G~sGsGKsTl~~~L~~ 34 (204)
T 2qor_A 13 PPLVVCGPSGVGKGTLIKKVLS 34 (204)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4556666 99999999987
No 433
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=50.38 E-value=7 Score=35.51 Aligned_cols=17 Identities=18% Similarity=0.139 Sum_probs=14.2
Q ss_pred EEEEec----chhhHHHHHhc
Q 037018 45 FLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 45 vi~i~G----GKTtla~~v~~ 61 (663)
+|+|.| ||||+|+.+.+
T Consensus 6 ~I~l~G~~GsGKsT~~~~L~~ 26 (204)
T 2v54_A 6 LIVFEGLDKSGKTTQCMNIME 26 (204)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 466666 99999999988
No 434
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=50.05 E-value=9.8 Score=33.86 Aligned_cols=31 Identities=19% Similarity=0.137 Sum_probs=19.9
Q ss_pred HHHHHHHhcCCCCceEEEEEec----chhhHHHHHhcCC
Q 037018 29 KAVLVWLFMLDSMWLQFLTAVA----YKTAFVADIYNNN 63 (663)
Q Consensus 29 ~~i~~~L~~~~~~~~~vi~i~G----GKTtla~~v~~~~ 63 (663)
.++.+ +.... ..-|.++| |||||+.++.+..
T Consensus 6 ~~~~~-~~~~~---~~~i~v~G~~~~GKssl~~~l~~~~ 40 (187)
T 1zj6_A 6 TRIWR-LFNHQ---EHKVIIVGLDNAGKTTILYQFSMNE 40 (187)
T ss_dssp HHHHH-HHTTS---CEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred HHHHH-hcCCC---ccEEEEECCCCCCHHHHHHHHhcCC
Confidence 34555 44432 24455666 9999999999754
No 435
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=50.02 E-value=11 Score=35.69 Aligned_cols=19 Identities=5% Similarity=-0.193 Sum_probs=15.7
Q ss_pred eEEEEEec----chhhHHHHHhc
Q 037018 43 LQFLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 43 ~~vi~i~G----GKTtla~~v~~ 61 (663)
..+|+|.| ||||+|+.+.+
T Consensus 29 ~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45677777 99999999987
No 436
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=50.01 E-value=6.9 Score=38.51 Aligned_cols=19 Identities=11% Similarity=0.163 Sum_probs=15.7
Q ss_pred eEEEEEec----chhhHHHHHhc
Q 037018 43 LQFLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 43 ~~vi~i~G----GKTtla~~v~~ 61 (663)
=.+++|+| |||||++.+..
T Consensus 126 Ge~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 126 KNCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhh
Confidence 35677777 99999999876
No 437
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=49.72 E-value=7.4 Score=38.34 Aligned_cols=19 Identities=21% Similarity=0.123 Sum_probs=16.4
Q ss_pred eEEEEEec----chhhHHHHHhc
Q 037018 43 LQFLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 43 ~~vi~i~G----GKTtla~~v~~ 61 (663)
-.+|+|+| ||||+++.+..
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHH
Confidence 46888888 99999999875
No 438
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=49.30 E-value=7.8 Score=34.67 Aligned_cols=21 Identities=10% Similarity=0.083 Sum_probs=16.7
Q ss_pred eEEEEEec----chhhHHHHHhcCC
Q 037018 43 LQFLTAVA----YKTAFVADIYNNN 63 (663)
Q Consensus 43 ~~vi~i~G----GKTtla~~v~~~~ 63 (663)
...|.|+| |||||+..+.+..
T Consensus 48 ~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 48 QPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44567777 9999999998854
No 439
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=48.52 E-value=8.9 Score=33.85 Aligned_cols=21 Identities=14% Similarity=0.061 Sum_probs=14.6
Q ss_pred eEEEEEec-chhhHHHHHhcCC
Q 037018 43 LQFLTAVA-YKTAFVADIYNNN 63 (663)
Q Consensus 43 ~~vi~i~G-GKTtla~~v~~~~ 63 (663)
+-++|-.| |||||+..+.+..
T Consensus 21 i~v~G~~~~GKssli~~l~~~~ 42 (183)
T 1moz_A 21 ILILGLDGAGKTTILYRLQIGE 42 (183)
T ss_dssp EEEEEETTSSHHHHHHHTCCSE
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 44444444 9999999998644
No 440
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=48.48 E-value=16 Score=36.18 Aligned_cols=20 Identities=30% Similarity=0.277 Sum_probs=17.5
Q ss_pred ceEEEEEec----chhhHHHHHhc
Q 037018 42 WLQFLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 42 ~~~vi~i~G----GKTtla~~v~~ 61 (663)
+-++|+|+| ||||++..+..
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~ 127 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMAN 127 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 567899998 99999999876
No 441
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=48.43 E-value=9.9 Score=33.63 Aligned_cols=21 Identities=14% Similarity=0.044 Sum_probs=15.3
Q ss_pred eEEEEEec-chhhHHHHHhcCC
Q 037018 43 LQFLTAVA-YKTAFVADIYNNN 63 (663)
Q Consensus 43 ~~vi~i~G-GKTtla~~v~~~~ 63 (663)
+-++|-.| |||||...+.+..
T Consensus 24 i~v~G~~~~GKSsli~~l~~~~ 45 (181)
T 2h17_A 24 VIIVGLDNAGKTTILYQFSMNE 45 (181)
T ss_dssp EEEEEETTSSHHHHHHHHHTTS
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 44444444 9999999998854
No 442
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=48.31 E-value=9.6 Score=32.66 Aligned_cols=19 Identities=11% Similarity=0.170 Sum_probs=15.2
Q ss_pred EEEEec----chhhHHHHHhcCC
Q 037018 45 FLTAVA----YKTAFVADIYNNN 63 (663)
Q Consensus 45 vi~i~G----GKTtla~~v~~~~ 63 (663)
-|.++| |||||+..+.+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 456666 9999999998854
No 443
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=48.13 E-value=7.9 Score=35.62 Aligned_cols=16 Identities=13% Similarity=0.106 Sum_probs=13.0
Q ss_pred EEEec----chhhHHHHHhc
Q 037018 46 LTAVA----YKTAFVADIYN 61 (663)
Q Consensus 46 i~i~G----GKTtla~~v~~ 61 (663)
|+|.| ||||+|+.+..
T Consensus 3 I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 3 IVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 45555 99999999977
No 444
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=47.88 E-value=7.7 Score=37.44 Aligned_cols=19 Identities=16% Similarity=0.349 Sum_probs=15.1
Q ss_pred EEEEec----chhhHHHHHhcCC
Q 037018 45 FLTAVA----YKTAFVADIYNNN 63 (663)
Q Consensus 45 vi~i~G----GKTtla~~v~~~~ 63 (663)
.++|+| |||||++.++.-.
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 366777 9999999999743
No 445
>2vos_A Folylpolyglutamate synthase protein FOLC; ligase, peptidoglycan synthesis, cell division; HET: ADP; 2.0A {Mycobacterium tuberculosis} PDB: 2vor_A*
Probab=47.85 E-value=8.1 Score=40.94 Aligned_cols=20 Identities=10% Similarity=-0.074 Sum_probs=17.6
Q ss_pred ceEEEEEec--chhhHHHHHhc
Q 037018 42 WLQFLTAVA--YKTAFVADIYN 61 (663)
Q Consensus 42 ~~~vi~i~G--GKTtla~~v~~ 61 (663)
..++|+|.| ||||.+..+..
T Consensus 63 ~~~vI~VtGTNGKtST~~~l~~ 84 (487)
T 2vos_A 63 SYPSIHIAGTNGKTSVARMVDA 84 (487)
T ss_dssp SSCEEEEECSSSHHHHHHHHHH
T ss_pred cCeEEEEeCCCCcHHHHHHHHH
Confidence 678999999 99998887766
No 446
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=47.70 E-value=8.7 Score=36.73 Aligned_cols=18 Identities=11% Similarity=0.242 Sum_probs=14.6
Q ss_pred EEEEEec----chhhHHHHHhc
Q 037018 44 QFLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 44 ~vi~i~G----GKTtla~~v~~ 61 (663)
.+|.|.| ||||+|+.+..
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHH
Confidence 4566666 99999999988
No 447
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=47.57 E-value=8.7 Score=36.15 Aligned_cols=19 Identities=21% Similarity=0.197 Sum_probs=14.9
Q ss_pred EEEEEec----chhhHHHHHhcC
Q 037018 44 QFLTAVA----YKTAFVADIYNN 62 (663)
Q Consensus 44 ~vi~i~G----GKTtla~~v~~~ 62 (663)
..|.|.| ||||+++.+.+.
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 3455666 999999999983
No 448
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=47.14 E-value=11 Score=32.68 Aligned_cols=20 Identities=10% Similarity=0.135 Sum_probs=16.6
Q ss_pred EEEEEec----chhhHHHHHhcCC
Q 037018 44 QFLTAVA----YKTAFVADIYNNN 63 (663)
Q Consensus 44 ~vi~i~G----GKTtla~~v~~~~ 63 (663)
..|+++| |||||.+.+.+..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCCS
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 4578888 9999999998754
No 449
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=46.81 E-value=8.3 Score=35.89 Aligned_cols=17 Identities=12% Similarity=-0.035 Sum_probs=13.6
Q ss_pred EEEEec----chhhHHHHHhc
Q 037018 45 FLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 45 vi~i~G----GKTtla~~v~~ 61 (663)
+|.|.| ||||+|+.+.+
T Consensus 9 ~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 9 RAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 455555 99999999987
No 450
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=46.66 E-value=6.7 Score=35.77 Aligned_cols=38 Identities=13% Similarity=-0.019 Sum_probs=15.2
Q ss_pred chhhcHHHHHHHHhcCCCCceEEEEEec----chhhHHHHHhcCC
Q 037018 23 TVKVKVKAVLVWLFMLDSMWLQFLTAVA----YKTAFVADIYNNN 63 (663)
Q Consensus 23 G~~~~~~~i~~~L~~~~~~~~~vi~i~G----GKTtla~~v~~~~ 63 (663)
|.....+.+.++..... .--|.++| |||||+..+.++.
T Consensus 13 ~~~~~~~~m~~~~~~~~---~~ki~vvG~~~~GKSsLi~~l~~~~ 54 (204)
T 4gzl_A 13 GLVPRGSHMENLYFQGQ---AIKCVVVGDGAVGKTCLLISYTTNA 54 (204)
T ss_dssp --------------------CEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred CcccchhHHHhHhhcCC---eEEEEEECcCCCCHHHHHHHHHhCC
Confidence 33444444444444333 23355666 9999999988754
No 451
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=46.62 E-value=9 Score=35.47 Aligned_cols=18 Identities=22% Similarity=0.246 Sum_probs=15.6
Q ss_pred EEEEEec----chhhHHHHHhc
Q 037018 44 QFLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 44 ~vi~i~G----GKTtla~~v~~ 61 (663)
.+++|.| |||||++.+..
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~ 45 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIA 45 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 5777888 99999999986
No 452
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=46.23 E-value=8.8 Score=35.31 Aligned_cols=16 Identities=19% Similarity=0.028 Sum_probs=13.1
Q ss_pred EEEec----chhhHHHHHhc
Q 037018 46 LTAVA----YKTAFVADIYN 61 (663)
Q Consensus 46 i~i~G----GKTtla~~v~~ 61 (663)
|+|.| ||||+|+.+..
T Consensus 3 I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 3 LVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 45555 99999999977
No 453
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=46.12 E-value=8.8 Score=35.47 Aligned_cols=17 Identities=6% Similarity=0.055 Sum_probs=13.6
Q ss_pred EEEEec----chhhHHHHHhc
Q 037018 45 FLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 45 vi~i~G----GKTtla~~v~~ 61 (663)
.|.+.| ||||+|+.+.+
T Consensus 6 ~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 6 RMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 455555 99999999988
No 454
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=46.06 E-value=14 Score=32.69 Aligned_cols=22 Identities=9% Similarity=0.039 Sum_probs=17.5
Q ss_pred ceEEEEEec----chhhHHHHHhcCC
Q 037018 42 WLQFLTAVA----YKTAFVADIYNNN 63 (663)
Q Consensus 42 ~~~vi~i~G----GKTtla~~v~~~~ 63 (663)
+...|+++| |||||+..+.+..
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~~ 31 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGEN 31 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 345678888 9999999998843
No 455
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=45.96 E-value=15 Score=39.19 Aligned_cols=55 Identities=13% Similarity=0.077 Sum_probs=31.9
Q ss_pred HHHHHHhcCCCCceEEEEEec----chhhHHHHHhcCCCccccCCCCccccCCceeeccCCCcceEeCCCcchhHHHHHH
Q 037018 30 AVLVWLFMLDSMWLQFLTAVA----YKTAFVADIYNNNVDLSAMNPKLRVPKRFINKAFPVAFPVDVNCACNAQLNHILD 105 (663)
Q Consensus 30 ~i~~~L~~~~~~~~~vi~i~G----GKTtla~~v~~~~~~~~~~~~~~~~~~~F~~~~~~~~~~v~vs~~~~~~~~~l~~ 105 (663)
+++..|.--.. =+-++|+| |||+|++.+.+.. . -+.+++ +-+.+..+ ...++.+
T Consensus 221 rvID~l~Pigr--Gqr~~Ifgg~g~GKT~L~~~ia~~~----------~----~~v~V~-----~~iGER~~-Ev~e~~~ 278 (600)
T 3vr4_A 221 RVIDTFFPVTK--GGAAAVPGPFGAGKTVVQHQIAKWS----------D----VDLVVY-----VGCGERGN-EMTDVVN 278 (600)
T ss_dssp HHHHHHSCCBT--TCEEEEECCTTSCHHHHHHHHHHHS----------S----CSEEEE-----EEEEECHH-HHHHHHH
T ss_pred hhhhccCCccC--CCEEeeecCCCccHHHHHHHHHhcc----------C----CCEEEE-----EEecccHH-HHHHHHH
Confidence 34555544321 23456665 9999999998843 2 256777 76666543 1344444
Q ss_pred H
Q 037018 106 D 106 (663)
Q Consensus 106 ~ 106 (663)
+
T Consensus 279 ~ 279 (600)
T 3vr4_A 279 E 279 (600)
T ss_dssp H
T ss_pred H
Confidence 4
No 456
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=45.91 E-value=12 Score=37.79 Aligned_cols=36 Identities=19% Similarity=0.295 Sum_probs=21.4
Q ss_pred HHHHHhhcCCcEEEEEeCCCCChhhHHHHHhhCCCCCC
Q 037018 130 IILRDYLTNKKDFIVLDDVFDDREIWNDLEKFLPDNQN 167 (663)
Q Consensus 130 ~~l~~~L~~kr~LlVLDdv~~~~~~~~~l~~~~~~~~~ 167 (663)
.-++..++...-.+++|.+.. .+.++.+ ..++.+..
T Consensus 243 ~~i~~~l~~~pd~~l~~e~r~-~~~~~~l-~~l~~g~~ 278 (361)
T 2gza_A 243 TLLRSCLRMKPTRILLAELRG-GEAYDFI-NVAASGHG 278 (361)
T ss_dssp HHHHHHTTSCCSEEEESCCCS-THHHHHH-HHHHTTCC
T ss_pred HHHHHHHhcCCCEEEEcCchH-HHHHHHH-HHHhcCCC
Confidence 334555655555677888877 6666644 44554443
No 457
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=45.80 E-value=11 Score=34.10 Aligned_cols=21 Identities=14% Similarity=0.183 Sum_probs=17.4
Q ss_pred eEEEEEec----chhhHHHHHhcCC
Q 037018 43 LQFLTAVA----YKTAFVADIYNNN 63 (663)
Q Consensus 43 ~~vi~i~G----GKTtla~~v~~~~ 63 (663)
...|+|+| |||||++.+....
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCC
Confidence 45678888 9999999998854
No 458
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=45.22 E-value=10 Score=37.49 Aligned_cols=20 Identities=5% Similarity=0.011 Sum_probs=16.9
Q ss_pred ceEEEEEec----chhhHHHHHhc
Q 037018 42 WLQFLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 42 ~~~vi~i~G----GKTtla~~v~~ 61 (663)
..+||+|.| ||||.|-.+.-
T Consensus 47 ~aKVIAIaGKGGVGKTTtavNLA~ 70 (314)
T 3fwy_A 47 GAKVFAVYGKGGIGKSTTSSNLSA 70 (314)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCccCHHHHHHHHHH
Confidence 579999999 99998877654
No 459
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=45.01 E-value=29 Score=34.19 Aligned_cols=83 Identities=12% Similarity=0.088 Sum_probs=45.9
Q ss_pred EEEEEec----chhhHHHHHhcCCCccccCCCCccccCC--ceeeccCCCcceEeCCCcchhHHHHHHHHHHHhCCCCCc
Q 037018 44 QFLTAVA----YKTAFVADIYNNNVDLSAMNPKLRVPKR--FINKAFPVAFPVDVNCACNAQLNHILDDIIKSVMPPSRV 117 (663)
Q Consensus 44 ~vi~i~G----GKTtla~~v~~~~~~~~~~~~~~~~~~~--F~~~~~~~~~~v~vs~~~~~~~~~l~~~i~~~l~~~~~~ 117 (663)
.++-|+| ||||||-++.. ..... =..++| ++....++ .. -+++++.+.+.
T Consensus 29 GiteI~G~pGsGKTtL~Lq~~~------------~~~~~g~g~~vly-----Id~E~s~~--~~-----ra~~lGvd~d~ 84 (333)
T 3io5_A 29 GLLILAGPSKSFKSNFGLTMVS------------SYMRQYPDAVCLF-----YDSEFGIT--PA-----YLRSMGVDPER 84 (333)
T ss_dssp EEEEEEESSSSSHHHHHHHHHH------------HHHHHCTTCEEEE-----EESSCCCC--HH-----HHHHTTCCGGG
T ss_pred CeEEEECCCCCCHHHHHHHHHH------------HHHhcCCCceEEE-----Eeccchhh--HH-----HHHHhCCCHHH
Confidence 3678888 99999988877 33332 235678 87777777 43 25666654221
Q ss_pred c---hhhhhHhh-HH-HHHHHHhhcCCcEEEEEeCCCC
Q 037018 118 N---VIISEDYK-LK-TIILRDYLTNKKDFIVLDDVFD 150 (663)
Q Consensus 118 ~---~~~~~~~~-l~-~~~l~~~L~~kr~LlVLDdv~~ 150 (663)
- ...+..+. +. ...+...-+++.-+||+|-|-.
T Consensus 85 llv~~~~~~E~~~l~i~~~l~~i~~~~~~lvVIDSI~a 122 (333)
T 3io5_A 85 VIHTPVQSLEQLRIDMVNQLDAIERGEKVVVFIDSLGN 122 (333)
T ss_dssp EEEEECSBHHHHHHHHHHHHHTCCTTCCEEEEEECSTT
T ss_pred eEEEcCCCHHHHHHHHHHHHHHhhccCceEEEEecccc
Confidence 0 00111111 10 1111111234677999999876
No 460
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=44.96 E-value=9.8 Score=35.76 Aligned_cols=18 Identities=6% Similarity=0.001 Sum_probs=15.4
Q ss_pred EEEEEec----chhhHHHHHhc
Q 037018 44 QFLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 44 ~vi~i~G----GKTtla~~v~~ 61 (663)
.+|+|.| ||||+|+.+..
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4677777 99999999987
No 461
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=44.67 E-value=19 Score=34.28 Aligned_cols=33 Identities=12% Similarity=-0.023 Sum_probs=21.3
Q ss_pred HHHHHHhcCCCCceEEEEEec----chhhHHHHHhcCC
Q 037018 30 AVLVWLFMLDSMWLQFLTAVA----YKTAFVADIYNNN 63 (663)
Q Consensus 30 ~i~~~L~~~~~~~~~vi~i~G----GKTtla~~v~~~~ 63 (663)
++.+.+..... +-..|+++| |||||+.++....
T Consensus 24 ~~~~~~~~~~~-~~~~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 24 EFFGKLKQKDM-NSMTVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp HHHHHHHHTTC-CEEEEEEEECTTSSHHHHHHHHHTSC
T ss_pred HHHHHHhhccC-CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 33444444333 344566777 9999999999855
No 462
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=44.62 E-value=9 Score=38.78 Aligned_cols=21 Identities=10% Similarity=0.056 Sum_probs=17.3
Q ss_pred eEEEEEec----chhhHHHHHhcCC
Q 037018 43 LQFLTAVA----YKTAFVADIYNNN 63 (663)
Q Consensus 43 ~~vi~i~G----GKTtla~~v~~~~ 63 (663)
-..++|+| |||||++.+..-.
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~ 194 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVF 194 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHh
Confidence 56788888 9999999988743
No 463
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=44.00 E-value=10 Score=38.34 Aligned_cols=47 Identities=15% Similarity=0.304 Sum_probs=27.4
Q ss_pred HHHHHhhcCCcEEEEEeCCCC--ChhhHHHHHhhCCC--CCCCceEEEEEe
Q 037018 130 IILRDYLTNKKDFIVLDDVFD--DREIWNDLEKFLPD--NQNGSRVLILVT 176 (663)
Q Consensus 130 ~~l~~~L~~kr~LlVLDdv~~--~~~~~~~l~~~~~~--~~~gskIiiT~r 176 (663)
-.|-+.|-.+.=+|+||.--+ |...-..+...+.. ...|.-||++|-
T Consensus 172 VaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTH 222 (366)
T 3tui_C 172 VAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITH 222 (366)
T ss_dssp HHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEES
T ss_pred HHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEec
Confidence 345567777777889999877 55544444444332 122545555443
No 464
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=43.99 E-value=6.8 Score=36.75 Aligned_cols=20 Identities=25% Similarity=0.014 Sum_probs=16.2
Q ss_pred ceEEEEEec-chhhHHHHHhc
Q 037018 42 WLQFLTAVA-YKTAFVADIYN 61 (663)
Q Consensus 42 ~~~vi~i~G-GKTtla~~v~~ 61 (663)
++.++|..| ||||+|+.+.+
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~ 30 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKE 30 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred ceeeECCCCCCHHHHHHHHHH
Confidence 566666666 99999999987
No 465
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=43.92 E-value=12 Score=36.78 Aligned_cols=22 Identities=14% Similarity=0.381 Sum_probs=19.3
Q ss_pred ceEEEEEec----chhhHHHHHhcCC
Q 037018 42 WLQFLTAVA----YKTAFVADIYNNN 63 (663)
Q Consensus 42 ~~~vi~i~G----GKTtla~~v~~~~ 63 (663)
+..+|+|+| |||||..++....
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~ 32 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQK 32 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCS
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCC
Confidence 567899999 9999999998865
No 466
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=43.78 E-value=10 Score=33.74 Aligned_cols=17 Identities=24% Similarity=0.339 Sum_probs=14.3
Q ss_pred EEEec----chhhHHHHHhcC
Q 037018 46 LTAVA----YKTAFVADIYNN 62 (663)
Q Consensus 46 i~i~G----GKTtla~~v~~~ 62 (663)
|+|+| |||||++.+.+.
T Consensus 5 v~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 5 LMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEESCTTSSHHHHHHHHTCC
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 56677 999999999884
No 467
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=43.77 E-value=11 Score=32.86 Aligned_cols=20 Identities=10% Similarity=0.014 Sum_probs=15.7
Q ss_pred EEEEEec----chhhHHHHHhcCC
Q 037018 44 QFLTAVA----YKTAFVADIYNNN 63 (663)
Q Consensus 44 ~vi~i~G----GKTtla~~v~~~~ 63 (663)
--|.|+| |||||+..+.+..
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEEECCCCccHHHHHHHHhcCC
Confidence 4467777 9999999998865
No 468
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=43.70 E-value=8.7 Score=36.76 Aligned_cols=20 Identities=15% Similarity=0.177 Sum_probs=16.5
Q ss_pred ceEEEEEec----chhhHHHHHhc
Q 037018 42 WLQFLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 42 ~~~vi~i~G----GKTtla~~v~~ 61 (663)
+...|.|.| ||||+|+.+.+
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~ 46 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQ 46 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 346777777 99999999888
No 469
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=43.42 E-value=11 Score=37.68 Aligned_cols=21 Identities=14% Similarity=0.145 Sum_probs=17.7
Q ss_pred eEEEEEec----chhhHHHHHhcCC
Q 037018 43 LQFLTAVA----YKTAFVADIYNNN 63 (663)
Q Consensus 43 ~~vi~i~G----GKTtla~~v~~~~ 63 (663)
-.+|.|+| ||||||..+....
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CceEEEECCCCCCHHHHHHHHHHHC
Confidence 35888998 9999999999843
No 470
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=49.21 E-value=5 Score=36.50 Aligned_cols=39 Identities=13% Similarity=-0.020 Sum_probs=22.2
Q ss_pred hhcHHHHHHHHhcCCCCceEEEEEec-chhhHHHHHhcCC
Q 037018 25 KVKVKAVLVWLFMLDSMWLQFLTAVA-YKTAFVADIYNNN 63 (663)
Q Consensus 25 ~~~~~~i~~~L~~~~~~~~~vi~i~G-GKTtla~~v~~~~ 63 (663)
......+.+.+.....-++-++|-.| |||||+..+.++.
T Consensus 15 ~~~~~~m~~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~ 54 (204)
T 3th5_A 15 VPRGSHMENLYFQGQAIKCVVVGDGAVGKTCLLISYTTNA 54 (204)
Confidence 33344444444443322444455555 9999998887644
No 471
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=43.08 E-value=11 Score=32.49 Aligned_cols=20 Identities=15% Similarity=0.162 Sum_probs=15.9
Q ss_pred EEEEEec----chhhHHHHHhcCC
Q 037018 44 QFLTAVA----YKTAFVADIYNNN 63 (663)
Q Consensus 44 ~vi~i~G----GKTtla~~v~~~~ 63 (663)
.-|.++| |||||+..+.+..
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCc
Confidence 3466777 9999999998754
No 472
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=43.03 E-value=17 Score=33.38 Aligned_cols=34 Identities=15% Similarity=-0.024 Sum_probs=23.5
Q ss_pred hcHHHHHHHHhcCCCCceEEEEEec----chhhHHHHHhc
Q 037018 26 VKVKAVLVWLFMLDSMWLQFLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 26 ~~~~~i~~~L~~~~~~~~~vi~i~G----GKTtla~~v~~ 61 (663)
.-+..+..++...+ +-.-+-|+| ||||+|.++.+
T Consensus 43 ~f~~~l~~~~~~iP--kkn~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 43 TFLGALKSFLKGTP--KKNCLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp HHHHHHHHHHHTCT--TCSEEEEESCGGGCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCC--cccEEEEECCCCCCHHHHHHHHHH
Confidence 33566666666533 223477777 99999999998
No 473
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=43.01 E-value=20 Score=37.35 Aligned_cols=35 Identities=9% Similarity=-0.051 Sum_probs=25.4
Q ss_pred cHHHHHHHHhcC--CCCceEEEEEec----chhhHHHHHhc
Q 037018 27 KVKAVLVWLFML--DSMWLQFLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 27 ~~~~i~~~L~~~--~~~~~~vi~i~G----GKTtla~~v~~ 61 (663)
..+.+...|... ...++.||+|+| ||+||...++.
T Consensus 49 ~~eal~~iL~~~~~~~~~v~vVsV~G~~~~GKStLLN~llg 89 (447)
T 3q5d_A 49 DETALNRILLSEAVRDKEVVAVSVAGAFRKGKSFLMDFMLR 89 (447)
T ss_dssp CHHHHHHHHCCTTTTTSBEEEEEEEESTTSSHHHHHHHHHH
T ss_pred CHHHHHHHHhccccCCCceEEEEEECCCCCcHHHHHHHHhh
Confidence 344444566541 123899999999 99999999985
No 474
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=42.95 E-value=12 Score=36.99 Aligned_cols=20 Identities=15% Similarity=0.054 Sum_probs=17.1
Q ss_pred eEEEEEec----chhhHHHHHhcC
Q 037018 43 LQFLTAVA----YKTAFVADIYNN 62 (663)
Q Consensus 43 ~~vi~i~G----GKTtla~~v~~~ 62 (663)
-.+|.|+| ||||||..+...
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHh
Confidence 35788999 999999999883
No 475
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=42.83 E-value=12 Score=32.38 Aligned_cols=18 Identities=11% Similarity=0.194 Sum_probs=14.8
Q ss_pred EEEec----chhhHHHHHhcCC
Q 037018 46 LTAVA----YKTAFVADIYNNN 63 (663)
Q Consensus 46 i~i~G----GKTtla~~v~~~~ 63 (663)
|.++| |||||+.++.+..
T Consensus 6 i~v~G~~~~GKssli~~l~~~~ 27 (172)
T 2erx_A 6 VAVFGAGGVGKSSLVLRFVKGT 27 (172)
T ss_dssp EEEECCTTSSHHHHHHHHHTCC
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 56667 9999999998754
No 476
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=42.75 E-value=11 Score=32.43 Aligned_cols=19 Identities=16% Similarity=0.132 Sum_probs=15.4
Q ss_pred EEEEec----chhhHHHHHhcCC
Q 037018 45 FLTAVA----YKTAFVADIYNNN 63 (663)
Q Consensus 45 vi~i~G----GKTtla~~v~~~~ 63 (663)
-|.++| |||||+..+.+..
T Consensus 5 ki~v~G~~~~GKssli~~l~~~~ 27 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQGI 27 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 366777 9999999998754
No 477
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=42.63 E-value=18 Score=41.54 Aligned_cols=17 Identities=12% Similarity=0.214 Sum_probs=15.4
Q ss_pred eEEEEEec----chhhHHHHH
Q 037018 43 LQFLTAVA----YKTAFVADI 59 (663)
Q Consensus 43 ~~vi~i~G----GKTtla~~v 59 (663)
-++++|.| ||||+.+.|
T Consensus 662 g~i~~ItGpNGsGKSTlLr~i 682 (934)
T 3thx_A 662 QMFHIITGPNMGGKSTYIRQT 682 (934)
T ss_dssp BCEEEEECCTTSSHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHH
Confidence 47899999 999999998
No 478
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=42.50 E-value=11 Score=32.43 Aligned_cols=20 Identities=10% Similarity=0.082 Sum_probs=16.0
Q ss_pred EEEEEec----chhhHHHHHhcCC
Q 037018 44 QFLTAVA----YKTAFVADIYNNN 63 (663)
Q Consensus 44 ~vi~i~G----GKTtla~~v~~~~ 63 (663)
--|.++| |||||+..+.+..
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEEECcCCCCHHHHHHHHHcCC
Confidence 3466777 9999999998754
No 479
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=42.48 E-value=16 Score=32.28 Aligned_cols=21 Identities=10% Similarity=0.102 Sum_probs=16.6
Q ss_pred eEEEEEec----chhhHHHHHhcCC
Q 037018 43 LQFLTAVA----YKTAFVADIYNNN 63 (663)
Q Consensus 43 ~~vi~i~G----GKTtla~~v~~~~ 63 (663)
...|.++| |||||+..+.+..
T Consensus 16 ~~ki~ivG~~~vGKSsL~~~l~~~~ 40 (181)
T 1fzq_A 16 EVRILLLGLDNAGKTTLLKQLASED 40 (181)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCCSC
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCC
Confidence 45567777 9999999998854
No 480
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=42.19 E-value=19 Score=35.90 Aligned_cols=20 Identities=5% Similarity=-0.100 Sum_probs=17.2
Q ss_pred ceEEEEEec----chhhHHHHHhc
Q 037018 42 WLQFLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 42 ~~~vi~i~G----GKTtla~~v~~ 61 (663)
+-.+++|+| |||||.+.+..
T Consensus 54 ~g~~v~i~G~~GaGKSTLl~~l~g 77 (337)
T 2qm8_A 54 RAIRVGITGVPGVGKSTTIDALGS 77 (337)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 467888888 99999999974
No 481
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=42.16 E-value=7.9 Score=35.25 Aligned_cols=21 Identities=10% Similarity=-0.034 Sum_probs=15.9
Q ss_pred eEEEEEec----chhhHHHHHhcCC
Q 037018 43 LQFLTAVA----YKTAFVADIYNNN 63 (663)
Q Consensus 43 ~~vi~i~G----GKTtla~~v~~~~ 63 (663)
-..|+|+| |||||.+.+....
T Consensus 26 ~~~v~lvG~~g~GKSTLl~~l~g~~ 50 (210)
T 1pui_A 26 GIEVAFAGRSNAGKSSALNTLTNQK 50 (210)
T ss_dssp SEEEEEEECTTSSHHHHHTTTCCC-
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 35577777 9999999998743
No 482
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=42.14 E-value=13 Score=32.59 Aligned_cols=21 Identities=19% Similarity=0.221 Sum_probs=16.7
Q ss_pred eEEEEEec----chhhHHHHHhcCC
Q 037018 43 LQFLTAVA----YKTAFVADIYNNN 63 (663)
Q Consensus 43 ~~vi~i~G----GKTtla~~v~~~~ 63 (663)
...|.++| |||||+..+.+..
T Consensus 8 ~~~i~v~G~~~~GKssl~~~l~~~~ 32 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLLDAIRHSK 32 (178)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHTTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCc
Confidence 44567777 9999999998755
No 483
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=42.03 E-value=11 Score=38.00 Aligned_cols=20 Identities=25% Similarity=0.217 Sum_probs=15.9
Q ss_pred EEEEEec----chhhHHHHHhcCC
Q 037018 44 QFLTAVA----YKTAFVADIYNNN 63 (663)
Q Consensus 44 ~vi~i~G----GKTtla~~v~~~~ 63 (663)
.++||+| |||||++.+.+..
T Consensus 72 q~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 72 QRIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 4566666 9999999999944
No 484
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=42.01 E-value=11 Score=36.67 Aligned_cols=20 Identities=15% Similarity=0.122 Sum_probs=15.9
Q ss_pred EEEEEec----chhhHHHHHhcCC
Q 037018 44 QFLTAVA----YKTAFVADIYNNN 63 (663)
Q Consensus 44 ~vi~i~G----GKTtla~~v~~~~ 63 (663)
.+++|.| |||||++.+....
T Consensus 36 ~~~~i~G~~G~GKTTl~~~ia~~~ 59 (296)
T 1cr0_A 36 EVIMVTSGSGMGKSTFVRQQALQW 59 (296)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHH
Confidence 4677777 9999999988843
No 485
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=41.92 E-value=11 Score=32.19 Aligned_cols=18 Identities=28% Similarity=0.390 Sum_probs=14.3
Q ss_pred EEEec----chhhHHHHHhcCC
Q 037018 46 LTAVA----YKTAFVADIYNNN 63 (663)
Q Consensus 46 i~i~G----GKTtla~~v~~~~ 63 (663)
|.++| |||||+..+.+..
T Consensus 6 i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 6 LVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHHhCc
Confidence 45555 9999999998754
No 486
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=41.78 E-value=12 Score=37.08 Aligned_cols=18 Identities=11% Similarity=0.082 Sum_probs=15.5
Q ss_pred EEEEEec----chhhHHHHHhc
Q 037018 44 QFLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 44 ~vi~i~G----GKTtla~~v~~ 61 (663)
.+|.|+| ||||+|+.+..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4677777 99999999988
No 487
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=41.59 E-value=18 Score=45.02 Aligned_cols=95 Identities=14% Similarity=-0.016 Sum_probs=51.1
Q ss_pred HHHHHHHhcCCCCceEEEEEec----chhhHHHHHhcCCCccccCCCCccccCCceeeccCCCcceEeCCCcchhHHHHH
Q 037018 29 KAVLVWLFMLDSMWLQFLTAVA----YKTAFVADIYNNNVDLSAMNPKLRVPKRFINKAFPVAFPVDVNCACNAQLNHIL 104 (663)
Q Consensus 29 ~~i~~~L~~~~~~~~~vi~i~G----GKTtla~~v~~~~~~~~~~~~~~~~~~~F~~~~~~~~~~v~vs~~~~~~~~~l~ 104 (663)
.++-.+|....-++-++|-|+| ||||||.++.. +...+=...+| +.+...++ ...
T Consensus 1413 ~~LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~------------ea~~~G~~v~F-----i~~e~~~~--~l~-- 1471 (2050)
T 3cmu_A 1413 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIA------------AAQREGKTCAF-----IDAEHALD--PIY-- 1471 (2050)
T ss_dssp HHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHH------------HHHTTTCCEEE-----ECTTSCCC--HHH--
T ss_pred HHHHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHH------------HHHHcCCcEEE-----EEcccccC--HHH--
Confidence 3444555412212345566666 99999999988 33333345667 77777776 444
Q ss_pred HHHHHHhCCCCCcch---hhhhHhhHHHHHHHHhhc-CCcEEEEEeCCC
Q 037018 105 DDIIKSVMPPSRVNV---IISEDYKLKTIILRDYLT-NKKDFIVLDDVF 149 (663)
Q Consensus 105 ~~i~~~l~~~~~~~~---~~~~~~~l~~~~l~~~L~-~kr~LlVLDdv~ 149 (663)
++.++.+-+... .+. ..++ ...+++..+ .+--+||+|.+.
T Consensus 1472 ---a~~~G~dl~~l~v~~~~~-~E~~-l~~~~~lvr~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A 1472 ---ARKLGVDIDNLLCSQPDT-GEQA-LEICDALARSGAVDVIVVDSVA 1515 (2050)
T ss_dssp ---HHHTTCCTTTCEEECCSS-HHHH-HHHHHHHHHHTCCSEEEESCGG
T ss_pred ---HHHcCCCchhceeecCCh-HHHH-HHHHHHHHhcCCCCEEEEcChh
Confidence 445542211100 111 2233 444555544 355699999995
No 488
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=41.45 E-value=6.9 Score=42.69 Aligned_cols=45 Identities=13% Similarity=-0.065 Sum_probs=30.0
Q ss_pred ccccchhhcHHHHHHHHhcCCC-----------CceEEEEEec-chhhHHHHHhcCC
Q 037018 19 CSSKTVKVKVKAVLVWLFMLDS-----------MWLQFLTAVA-YKTAFVADIYNNN 63 (663)
Q Consensus 19 ~~~~G~~~~~~~i~~~L~~~~~-----------~~~~vi~i~G-GKTtla~~v~~~~ 63 (663)
+.++|.+.-++.+.-.|..... ..+-++|=.| |||+||+++.+..
T Consensus 295 ~~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~ 351 (595)
T 3f9v_A 295 PSIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVA 351 (595)
T ss_dssp STTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTC
T ss_pred chhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhC
Confidence 4688988766666555544421 0355555566 9999999998843
No 489
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=41.36 E-value=12 Score=36.20 Aligned_cols=18 Identities=11% Similarity=0.034 Sum_probs=15.2
Q ss_pred EEEEEec----chhhHHHHHhc
Q 037018 44 QFLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 44 ~vi~i~G----GKTtla~~v~~ 61 (663)
.++.|+| ||||||..+..
T Consensus 31 ~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 31 TVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp SEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 5677777 99999999886
No 490
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=41.26 E-value=9.6 Score=36.27 Aligned_cols=17 Identities=18% Similarity=-0.070 Sum_probs=13.8
Q ss_pred EEEEec----chhhHHHHHhc
Q 037018 45 FLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 45 vi~i~G----GKTtla~~v~~ 61 (663)
+|+|+| ||||+++.+..
T Consensus 50 ~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 50 SMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp CEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 455555 99999999988
No 491
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=41.18 E-value=12 Score=32.12 Aligned_cols=19 Identities=11% Similarity=0.148 Sum_probs=15.0
Q ss_pred EEEEec----chhhHHHHHhcCC
Q 037018 45 FLTAVA----YKTAFVADIYNNN 63 (663)
Q Consensus 45 vi~i~G----GKTtla~~v~~~~ 63 (663)
-|.++| |||||+.++.+..
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 366667 9999999988754
No 492
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=41.12 E-value=12 Score=32.94 Aligned_cols=19 Identities=5% Similarity=0.099 Sum_probs=15.3
Q ss_pred EEEEec----chhhHHHHHhcCC
Q 037018 45 FLTAVA----YKTAFVADIYNNN 63 (663)
Q Consensus 45 vi~i~G----GKTtla~~v~~~~ 63 (663)
.|+|+| |||||.+.+....
T Consensus 6 ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 6 KVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 466667 9999999998754
No 493
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=41.09 E-value=12 Score=32.32 Aligned_cols=20 Identities=20% Similarity=0.135 Sum_probs=15.9
Q ss_pred EEEEEec----chhhHHHHHhcCC
Q 037018 44 QFLTAVA----YKTAFVADIYNNN 63 (663)
Q Consensus 44 ~vi~i~G----GKTtla~~v~~~~ 63 (663)
--|.++| |||||+..+.+..
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCENK 30 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 4466777 9999999998754
No 494
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=41.04 E-value=12 Score=36.65 Aligned_cols=19 Identities=16% Similarity=0.209 Sum_probs=16.0
Q ss_pred eEEEEEec----chhhHHHHHhc
Q 037018 43 LQFLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 43 ~~vi~i~G----GKTtla~~v~~ 61 (663)
-.+|+++| ||||++..+..
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~ 127 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAA 127 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45777887 99999999886
No 495
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=40.93 E-value=12 Score=32.30 Aligned_cols=20 Identities=5% Similarity=0.034 Sum_probs=16.0
Q ss_pred EEEEEec----chhhHHHHHhcCC
Q 037018 44 QFLTAVA----YKTAFVADIYNNN 63 (663)
Q Consensus 44 ~vi~i~G----GKTtla~~v~~~~ 63 (663)
--|.++| |||||+..+.+..
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 3466777 9999999998865
No 496
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=40.89 E-value=21 Score=35.69 Aligned_cols=20 Identities=15% Similarity=-0.024 Sum_probs=17.3
Q ss_pred ceEEEEEec----chhhHHHHHhc
Q 037018 42 WLQFLTAVA----YKTAFVADIYN 61 (663)
Q Consensus 42 ~~~vi~i~G----GKTtla~~v~~ 61 (663)
+..+|+|+| ||||++..+..
T Consensus 55 ~~~~i~i~G~~g~GKSTl~~~l~~ 78 (341)
T 2p67_A 55 NTLRLGVTGTPGAGKSTFLEAFGM 78 (341)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 568888888 99999999865
No 497
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=40.85 E-value=12 Score=32.24 Aligned_cols=18 Identities=22% Similarity=0.309 Sum_probs=14.8
Q ss_pred EEEec----chhhHHHHHhcCC
Q 037018 46 LTAVA----YKTAFVADIYNNN 63 (663)
Q Consensus 46 i~i~G----GKTtla~~v~~~~ 63 (663)
|.++| |||||+.++.+..
T Consensus 6 i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 6 LVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 56667 9999999998755
No 498
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=40.74 E-value=12 Score=32.24 Aligned_cols=18 Identities=11% Similarity=-0.025 Sum_probs=13.5
Q ss_pred EEEec----chhhHHHHHhcCC
Q 037018 46 LTAVA----YKTAFVADIYNNN 63 (663)
Q Consensus 46 i~i~G----GKTtla~~v~~~~ 63 (663)
|.++| |||||++.+.+..
T Consensus 5 i~~vG~~~~GKSsli~~l~~~~ 26 (166)
T 3q72_A 5 VLLLGAPGVGKSALARIFGGVE 26 (166)
T ss_dssp EEEEESTTSSHHHHHHHHCCC-
T ss_pred EEEECCCCCCHHHHHHHHcCcc
Confidence 45555 9999999998744
No 499
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=40.68 E-value=15 Score=39.08 Aligned_cols=16 Identities=25% Similarity=0.108 Sum_probs=13.4
Q ss_pred EEEec----chhhHHHHHhc
Q 037018 46 LTAVA----YKTAFVADIYN 61 (663)
Q Consensus 46 i~i~G----GKTtla~~v~~ 61 (663)
++|+| ||||+++.+..
T Consensus 263 i~I~GptGSGKTTlL~aL~~ 282 (511)
T 2oap_1 263 AIVVGETASGKTTTLNAIMM 282 (511)
T ss_dssp EEEEESTTSSHHHHHHHHGG
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 55555 99999999988
No 500
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=40.63 E-value=12 Score=34.70 Aligned_cols=17 Identities=6% Similarity=-0.150 Sum_probs=13.3
Q ss_pred EEEEec-chhhHHHHHhc
Q 037018 45 FLTAVA-YKTAFVADIYN 61 (663)
Q Consensus 45 vi~i~G-GKTtla~~v~~ 61 (663)
++|..| ||||+|+.+..
T Consensus 5 l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 5 IFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EECCTTSCHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 444445 99999999987
Done!