Query 037019
Match_columns 175
No_of_seqs 103 out of 1178
Neff 8.7
Searched_HMMs 46136
Date Fri Mar 29 07:46:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037019.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037019hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0656 ARA1 Aldo/keto reducta 100.0 1.9E-36 4.1E-41 237.4 17.0 148 1-154 121-268 (280)
2 KOG1577 Aldo/keto reductase fa 100.0 2.7E-34 5.9E-39 225.7 16.2 151 1-154 139-289 (300)
3 KOG1575 Voltage-gated shaker-l 100.0 3.3E-34 7.2E-39 228.8 15.6 159 1-160 145-335 (336)
4 PRK11172 dkgB 2,5-diketo-D-glu 100.0 1E-32 2.3E-37 217.8 18.0 146 1-153 109-255 (267)
5 PRK11565 dkgA 2,5-diketo-D-glu 100.0 2.5E-31 5.4E-36 210.8 17.7 148 1-153 118-265 (275)
6 PF00248 Aldo_ket_red: Aldo/ke 100.0 1.6E-30 3.4E-35 206.3 14.6 148 1-149 117-282 (283)
7 PRK09912 L-glyceraldehyde 3-ph 100.0 1.7E-30 3.6E-35 212.1 14.9 150 1-151 148-334 (346)
8 TIGR01293 Kv_beta voltage-depe 100.0 1.2E-30 2.7E-35 210.6 14.0 147 1-148 130-316 (317)
9 COG0667 Tas Predicted oxidored 100.0 6.6E-30 1.4E-34 205.9 16.7 149 1-151 136-310 (316)
10 PRK10625 tas putative aldo-ket 100.0 3.6E-30 7.9E-35 210.1 14.6 149 1-150 159-339 (346)
11 cd06660 Aldo_ket_red Aldo-keto 100.0 2E-29 4.3E-34 200.2 17.0 147 1-148 128-285 (285)
12 PRK10376 putative oxidoreducta 100.0 3.8E-29 8.1E-34 199.7 15.9 141 1-150 145-288 (290)
13 COG4989 Predicted oxidoreducta 100.0 2.9E-28 6.3E-33 185.7 12.1 151 1-151 137-294 (298)
14 PLN02587 L-galactose dehydroge 100.0 1.1E-27 2.3E-32 193.2 16.2 150 1-151 132-301 (314)
15 PRK14863 bifunctional regulato 100.0 3.5E-28 7.7E-33 194.2 12.9 145 2-149 123-281 (292)
16 COG1453 Predicted oxidoreducta 99.9 1.2E-23 2.7E-28 168.0 14.4 157 1-164 131-305 (391)
17 KOG1576 Predicted oxidoreducta 99.8 3.8E-19 8.3E-24 137.1 12.1 138 1-139 158-310 (342)
18 KOG3023 Glutamate-cysteine lig 98.6 6.7E-08 1.5E-12 74.0 6.1 72 1-72 157-229 (285)
19 PRK10558 alpha-dehydro-beta-de 95.7 0.22 4.8E-06 39.3 10.8 102 6-135 10-115 (256)
20 PRK10128 2-keto-3-deoxy-L-rham 95.2 0.51 1.1E-05 37.5 11.2 102 6-135 9-114 (267)
21 TIGR03239 GarL 2-dehydro-3-deo 95.0 0.49 1.1E-05 37.2 10.4 99 9-135 6-108 (249)
22 TIGR02311 HpaI 2,4-dihydroxyhe 93.4 1.8 3.8E-05 34.0 10.6 100 7-135 4-108 (249)
23 PRK12360 4-hydroxy-3-methylbut 86.3 7.6 0.00016 31.1 8.7 106 13-130 157-274 (281)
24 PRK01045 ispH 4-hydroxy-3-meth 85.0 9.8 0.00021 30.8 8.8 107 13-130 156-275 (298)
25 COG1140 NarY Nitrate reductase 84.6 0.6 1.3E-05 38.8 1.7 53 12-65 263-317 (513)
26 PF07021 MetW: Methionine bios 84.3 7 0.00015 29.5 7.2 71 4-74 93-170 (193)
27 TIGR02026 BchE magnesium-proto 82.8 31 0.00066 29.9 11.7 120 2-132 227-361 (497)
28 TIGR00216 ispH_lytB (E)-4-hydr 81.8 13 0.00028 29.8 8.3 114 5-130 146-273 (280)
29 PF02401 LYTB: LytB protein; 80.0 11 0.00023 30.3 7.3 107 13-130 155-274 (281)
30 COG0761 lytB 4-Hydroxy-3-methy 78.0 19 0.00041 29.0 7.9 108 14-132 159-279 (294)
31 COG1149 MinD superfamily P-loo 77.9 5.5 0.00012 31.8 4.9 50 23-74 201-250 (284)
32 PRK07094 biotin synthase; Prov 77.5 30 0.00066 27.8 9.4 119 2-133 75-204 (323)
33 PRK00087 4-hydroxy-3-methylbut 75.2 19 0.00042 32.3 8.2 106 12-129 153-270 (647)
34 TIGR01182 eda Entner-Doudoroff 69.3 27 0.00058 26.6 6.7 60 2-68 46-106 (204)
35 PRK06015 keto-hydroxyglutarate 67.5 29 0.00063 26.4 6.6 60 2-68 42-102 (201)
36 TIGR00289 conserved hypothetic 67.2 56 0.0012 25.2 9.0 113 24-150 46-168 (222)
37 KOG3085 Predicted hydrolase (H 64.1 16 0.00034 28.6 4.7 58 3-62 119-180 (237)
38 PF01081 Aldolase: KDPG and KH 63.5 27 0.00059 26.4 5.8 60 2-68 46-106 (196)
39 TIGR03822 AblA_like_2 lysine-2 63.1 78 0.0017 25.7 8.8 70 3-74 156-238 (321)
40 cd00308 enolase_like Enolase-s 60.8 54 0.0012 24.9 7.2 70 3-74 134-207 (229)
41 PF06506 PrpR_N: Propionate ca 60.6 16 0.00035 26.8 4.1 63 1-68 65-130 (176)
42 PF07287 DUF1446: Protein of u 60.0 49 0.0011 27.6 7.1 87 3-100 12-100 (362)
43 COG2089 SpsE Sialic acid synth 59.8 18 0.00038 29.7 4.3 66 53-133 93-169 (347)
44 PRK07535 methyltetrahydrofolat 59.4 87 0.0019 24.7 9.2 66 5-72 60-125 (261)
45 TIGR01378 thi_PPkinase thiamin 59.3 52 0.0011 24.8 6.8 73 35-133 34-110 (203)
46 cd04742 NPD_FabD 2-Nitropropan 57.7 66 0.0014 27.4 7.6 64 7-71 32-103 (418)
47 PRK07998 gatY putative fructos 57.6 99 0.0021 24.9 8.4 85 24-113 86-179 (283)
48 TIGR02329 propionate_PrpR prop 57.6 39 0.00084 29.6 6.4 68 1-71 85-153 (526)
49 cd03319 L-Ala-DL-Glu_epimerase 55.5 62 0.0013 26.0 7.0 68 3-72 217-288 (316)
50 cd00423 Pterin_binding Pterin 55.0 1E+02 0.0022 24.1 9.0 66 4-74 66-131 (258)
51 COG0159 TrpA Tryptophan syntha 54.6 1.1E+02 0.0024 24.4 12.4 84 53-147 137-242 (265)
52 PF00809 Pterin_bind: Pterin b 54.4 48 0.001 25.1 5.9 66 4-73 61-126 (210)
53 TIGR00190 thiC thiamine biosyn 54.0 75 0.0016 26.9 7.2 66 3-79 165-231 (423)
54 TIGR01428 HAD_type_II 2-haloal 53.0 88 0.0019 22.8 7.1 35 1-36 96-130 (198)
55 PRK06552 keto-hydroxyglutarate 52.6 70 0.0015 24.5 6.5 60 2-68 51-114 (213)
56 PF14871 GHL6: Hypothetical gl 52.5 15 0.00032 25.9 2.6 22 53-74 47-68 (132)
57 TIGR01928 menC_lowGC/arch o-su 52.5 52 0.0011 26.7 6.1 71 2-74 211-285 (324)
58 PRK08776 cystathionine gamma-s 52.1 1.2E+02 0.0027 25.4 8.5 70 4-74 114-186 (405)
59 cd01822 Lysophospholipase_L1_l 51.3 85 0.0018 22.2 7.4 60 13-72 37-110 (177)
60 PRK10528 multifunctional acyl- 51.0 97 0.0021 22.7 7.6 61 9-69 40-114 (191)
61 TIGR02109 PQQ_syn_pqqE coenzym 50.4 1.4E+02 0.003 24.4 8.8 19 56-74 138-156 (358)
62 cd03322 rpsA The starvation se 49.3 71 0.0015 26.3 6.5 69 2-72 202-274 (361)
63 PF12728 HTH_17: Helix-turn-he 49.2 47 0.001 18.6 4.1 31 4-34 16-49 (51)
64 PF03102 NeuB: NeuB family; I 48.7 64 0.0014 25.2 5.8 66 53-133 59-135 (241)
65 TIGR00290 MJ0570_dom MJ0570-re 48.4 1.3E+02 0.0027 23.3 9.4 112 24-150 46-169 (223)
66 PRK13352 thiamine biosynthesis 47.5 1.1E+02 0.0024 26.0 7.3 65 4-79 169-234 (431)
67 PRK15424 propionate catabolism 47.4 73 0.0016 28.1 6.5 68 1-71 95-163 (538)
68 COG4626 Phage terminase-like p 47.3 73 0.0016 28.1 6.4 68 2-69 415-482 (546)
69 cd03315 MLE_like Muconate lact 46.9 93 0.002 24.2 6.6 68 3-72 169-240 (265)
70 PRK13753 dihydropteroate synth 45.9 1.3E+02 0.0028 24.1 7.3 64 3-73 66-129 (279)
71 TIGR01662 HAD-SF-IIIA HAD-supe 45.4 94 0.002 21.0 7.1 37 1-38 29-73 (132)
72 COG1831 Predicted metal-depend 45.3 65 0.0014 25.8 5.3 63 2-64 109-185 (285)
73 TIGR03471 HpnJ hopanoid biosyn 44.2 2E+02 0.0044 24.5 10.9 117 2-133 232-362 (472)
74 TIGR03551 F420_cofH 7,8-dideme 44.1 1.2E+02 0.0027 24.7 7.1 121 2-133 75-217 (343)
75 COG2185 Sbm Methylmalonyl-CoA 43.0 94 0.002 22.4 5.4 72 17-99 19-92 (143)
76 COG0159 TrpA Tryptophan syntha 42.9 50 0.0011 26.3 4.4 52 38-99 95-148 (265)
77 PRK07945 hypothetical protein; 42.9 1.9E+02 0.0041 23.7 11.4 93 4-103 211-318 (335)
78 TIGR03471 HpnJ hopanoid biosyn 42.5 52 0.0011 28.2 4.9 21 53-73 326-346 (472)
79 PF13378 MR_MLE_C: Enolase C-t 42.2 45 0.00098 22.1 3.7 51 21-74 3-56 (111)
80 COG1358 RPL8A Ribosomal protei 41.9 1.1E+02 0.0025 21.0 5.8 65 2-72 15-79 (116)
81 PRK07114 keto-hydroxyglutarate 41.5 96 0.0021 24.0 5.7 59 1-68 52-117 (222)
82 cd00739 DHPS DHPS subgroup of 41.2 1.8E+02 0.0038 22.9 8.2 62 5-71 67-128 (257)
83 PLN02591 tryptophan synthase 41.1 1.8E+02 0.0038 22.9 13.2 72 52-134 120-213 (250)
84 TIGR03821 AblA_like_1 lysine-2 41.0 2E+02 0.0043 23.4 8.5 70 4-74 163-244 (321)
85 PRK14017 galactonate dehydrata 41.0 1.2E+02 0.0025 25.2 6.6 67 3-71 217-287 (382)
86 TIGR01502 B_methylAsp_ase meth 40.7 2.2E+02 0.0047 24.2 8.2 68 3-72 281-357 (408)
87 TIGR01212 radical SAM protein, 40.3 59 0.0013 26.1 4.6 59 3-73 126-186 (302)
88 cd04743 NPD_PKS 2-Nitropropane 40.0 2.1E+02 0.0045 23.5 9.5 60 11-70 25-89 (320)
89 COG0773 MurC UDP-N-acetylmuram 39.8 6.5 0.00014 33.7 -1.0 64 48-119 75-141 (459)
90 cd01573 modD_like ModD; Quinol 39.6 1.9E+02 0.0042 22.9 7.5 62 3-69 171-236 (272)
91 TIGR01210 conserved hypothetic 39.5 1.5E+02 0.0032 24.0 6.9 22 53-74 158-179 (313)
92 cd08606 GDPD_YPL110cp_fungi Gl 39.2 1.8E+02 0.0039 22.9 7.2 32 5-36 155-186 (286)
93 cd03327 MR_like_2 Mandelate ra 39.1 1.5E+02 0.0034 24.1 7.0 64 3-68 211-278 (341)
94 PRK08247 cystathionine gamma-s 39.0 2.2E+02 0.0047 23.4 8.5 59 15-74 116-177 (366)
95 PF11242 DUF2774: Protein of u 39.0 51 0.0011 20.1 3.0 22 90-111 16-37 (63)
96 CHL00200 trpA tryptophan synth 38.5 2E+02 0.0043 22.8 13.1 70 2-73 79-154 (263)
97 cd08568 GDPD_TmGDE_like Glycer 38.5 1.7E+02 0.0037 22.1 8.2 31 6-36 109-139 (226)
98 PRK13602 putative ribosomal pr 38.5 1.1E+02 0.0023 19.6 5.8 58 6-70 3-60 (82)
99 cd03323 D-glucarate_dehydratas 38.5 1.8E+02 0.0039 24.4 7.4 68 3-72 250-321 (395)
100 COG1168 MalY Bifunctional PLP- 38.3 91 0.002 26.2 5.4 49 24-72 146-200 (388)
101 TIGR02080 O_succ_thio_ly O-suc 37.6 2.4E+02 0.0051 23.4 7.9 70 4-74 105-177 (382)
102 TIGR01917 gly_red_sel_B glycin 37.4 2.6E+02 0.0055 24.0 7.9 70 3-72 289-373 (431)
103 TIGR01660 narH nitrate reducta 37.3 21 0.00044 30.8 1.6 50 13-63 264-315 (492)
104 PRK12331 oxaloacetate decarbox 37.3 2.2E+02 0.0048 24.5 7.8 69 2-70 62-143 (448)
105 COG1104 NifS Cysteine sulfinat 36.8 1.1E+02 0.0023 25.9 5.6 74 2-77 104-184 (386)
106 TIGR02534 mucon_cyclo muconate 36.7 1.5E+02 0.0032 24.4 6.6 68 3-72 227-298 (368)
107 cd02742 GH20_hexosaminidase Be 36.7 51 0.0011 26.5 3.7 19 53-71 75-93 (303)
108 COG1026 Predicted Zn-dependent 36.7 2.6E+02 0.0056 26.7 8.4 75 76-150 406-493 (978)
109 COG2159 Predicted metal-depend 36.6 2.2E+02 0.0048 22.8 9.1 66 5-74 88-168 (293)
110 PRK08574 cystathionine gamma-s 36.4 1.6E+02 0.0036 24.4 6.8 51 24-74 125-178 (385)
111 COG0108 RibB 3,4-dihydroxy-2-b 36.2 84 0.0018 24.0 4.5 39 31-69 149-191 (203)
112 cd08572 GDPD_GDE5_like Glycero 36.1 2E+02 0.0043 23.0 7.0 32 5-36 169-200 (293)
113 KOG1602 Cis-prenyltransferase 35.5 73 0.0016 25.3 4.2 22 53-74 70-91 (271)
114 COG0626 MetC Cystathionine bet 35.4 2.8E+02 0.006 23.5 8.4 76 2-78 115-193 (396)
115 TIGR01329 cysta_beta_ly_E cyst 35.3 2.6E+02 0.0056 23.1 8.3 59 15-74 111-172 (378)
116 PF01113 DapB_N: Dihydrodipico 35.2 1.1E+02 0.0025 20.8 4.9 36 2-37 80-115 (124)
117 PRK15072 bifunctional D-altron 35.1 1.6E+02 0.0036 24.6 6.7 68 3-72 246-317 (404)
118 cd08605 GDPD_GDE5_like_1_plant 34.7 2E+02 0.0043 22.6 6.8 29 8-36 163-191 (282)
119 COG3033 TnaA Tryptophanase [Am 34.2 1.1E+02 0.0023 26.0 5.1 50 22-71 168-227 (471)
120 TIGR01918 various_sel_PB selen 34.1 3E+02 0.0066 23.6 7.9 70 3-72 289-373 (431)
121 COG1151 6Fe-6S prismane cluste 33.9 57 0.0012 28.8 3.7 18 2-19 395-412 (576)
122 cd07995 TPK Thiamine pyrophosp 33.9 2E+02 0.0044 21.5 6.9 72 36-133 39-114 (208)
123 PF01120 Alpha_L_fucos: Alpha- 33.6 1E+02 0.0022 25.3 5.1 57 18-74 86-162 (346)
124 CHL00040 rbcL ribulose-1,5-bis 33.5 3E+02 0.0065 24.0 8.0 73 2-74 221-299 (475)
125 PRK06361 hypothetical protein; 33.4 2E+02 0.0044 21.4 7.5 46 53-104 151-196 (212)
126 PRK01018 50S ribosomal protein 33.3 1.4E+02 0.0031 19.7 6.6 62 2-70 4-65 (99)
127 PF00290 Trp_syntA: Tryptophan 33.1 2.5E+02 0.0053 22.3 10.2 71 2-74 74-151 (259)
128 KOG1185 Thiamine pyrophosphate 33.1 70 0.0015 27.9 4.0 108 20-129 199-318 (571)
129 PRK09449 dUMP phosphatase; Pro 32.8 2.1E+02 0.0045 21.3 7.0 34 1-36 99-132 (224)
130 cd03318 MLE Muconate Lactonizi 32.6 1.6E+02 0.0036 24.1 6.2 65 3-69 228-296 (365)
131 PF12689 Acid_PPase: Acid Phos 32.5 1.9E+02 0.0041 21.3 5.9 38 1-38 49-86 (169)
132 cd03314 MAL Methylaspartate am 32.3 1.9E+02 0.0042 24.1 6.5 68 3-72 245-321 (369)
133 cd04436 DEP_fRgd2 DEP (Disheve 32.1 18 0.0004 23.5 0.4 16 7-22 56-72 (84)
134 PRK05904 coproporphyrinogen II 32.1 2.6E+02 0.0057 23.0 7.3 52 23-74 70-124 (353)
135 TIGR02814 pfaD_fam PfaD family 32.0 1.8E+02 0.004 25.0 6.4 64 7-71 37-108 (444)
136 PRK10826 2-deoxyglucose-6-phos 31.9 2.2E+02 0.0047 21.2 7.4 34 2-36 97-130 (222)
137 COG1735 Php Predicted metal-de 31.9 82 0.0018 25.7 4.1 16 59-74 161-176 (316)
138 COG1751 Uncharacterized conser 31.4 2.1E+02 0.0046 21.0 6.6 65 10-74 23-94 (186)
139 cd03174 DRE_TIM_metallolyase D 31.4 2.4E+02 0.0052 21.6 9.9 66 2-70 53-135 (265)
140 PF05368 NmrA: NmrA-like famil 31.2 1.1E+02 0.0024 22.9 4.7 66 6-74 37-105 (233)
141 PRK14455 ribosomal RNA large s 31.1 2.5E+02 0.0054 23.3 7.0 73 2-74 248-337 (356)
142 COG4130 Predicted sugar epimer 30.8 2.6E+02 0.0057 21.9 7.5 73 23-98 49-135 (272)
143 PRK13347 coproporphyrinogen II 30.6 3.4E+02 0.0074 23.1 10.3 61 14-74 103-173 (453)
144 COG0289 DapB Dihydrodipicolina 30.6 1.3E+02 0.0029 24.0 5.0 46 2-47 82-127 (266)
145 cd03316 MR_like Mandelate race 30.4 2.2E+02 0.0047 23.2 6.5 66 3-70 229-298 (357)
146 PRK07379 coproporphyrinogen II 30.2 3.3E+02 0.0071 22.8 7.8 80 23-113 80-164 (400)
147 TIGR01422 phosphonatase phosph 30.1 2.5E+02 0.0054 21.4 6.9 34 1-35 103-136 (253)
148 TIGR01304 IMP_DH_rel_2 IMP deh 30.1 3.3E+02 0.0072 22.8 7.9 65 4-68 123-193 (369)
149 cd05126 Mth938 Mth938 domain. 30.1 1.9E+02 0.004 19.9 5.3 49 19-70 42-93 (117)
150 PRK09856 fructoselysine 3-epim 30.0 2E+02 0.0044 22.2 6.1 50 25-74 49-114 (275)
151 PRK09140 2-dehydro-3-deoxy-6-p 30.0 2.5E+02 0.0053 21.3 10.6 129 6-149 4-148 (206)
152 TIGR00221 nagA N-acetylglucosa 29.9 1.7E+02 0.0036 24.5 5.8 34 2-35 179-212 (380)
153 PF09012 FeoC: FeoC like trans 29.8 43 0.00094 20.4 1.8 20 4-23 33-52 (69)
154 PRK05301 pyrroloquinoline quin 29.8 3.2E+02 0.0069 22.5 8.6 16 57-72 148-163 (378)
155 PRK08248 O-acetylhomoserine am 29.4 3.5E+02 0.0077 22.9 8.5 59 15-74 129-190 (431)
156 cd03325 D-galactonate_dehydrat 29.2 2.6E+02 0.0057 22.8 6.8 66 3-70 216-285 (352)
157 COG2433 Uncharacterized conser 29.1 2.7E+02 0.0058 25.1 6.9 89 12-113 28-126 (652)
158 PRK13505 formate--tetrahydrofo 28.9 1.9E+02 0.004 25.8 6.0 47 28-74 364-412 (557)
159 TIGR01579 MiaB-like-C MiaB-lik 28.9 3.5E+02 0.0075 22.7 10.4 121 2-133 172-314 (414)
160 PF01053 Cys_Met_Meta_PP: Cys/ 28.7 2.3E+02 0.005 23.7 6.5 74 3-78 108-185 (386)
161 PRK02901 O-succinylbenzoate sy 28.6 2.7E+02 0.0058 22.8 6.7 69 4-74 174-243 (327)
162 PF01269 Fibrillarin: Fibrilla 28.5 38 0.00083 26.3 1.6 55 10-68 72-128 (229)
163 PF13518 HTH_28: Helix-turn-he 28.5 83 0.0018 17.4 2.8 22 89-111 14-35 (52)
164 cd00614 CGS_like CGS_like: Cys 28.3 3.3E+02 0.0072 22.3 7.9 54 23-78 113-169 (369)
165 COG3454 Metal-dependent hydrol 27.9 41 0.00089 27.8 1.8 67 2-69 144-229 (377)
166 COG0520 csdA Selenocysteine ly 27.5 2.6E+02 0.0056 23.6 6.6 68 6-74 128-203 (405)
167 PLN00191 enolase 27.4 3.5E+02 0.0075 23.4 7.4 67 2-70 324-395 (457)
168 PRK14338 (dimethylallyl)adenos 27.2 4E+02 0.0086 22.8 8.4 120 2-133 189-331 (459)
169 smart00633 Glyco_10 Glycosyl h 27.2 3E+02 0.0064 21.3 7.0 70 3-72 139-227 (254)
170 cd01994 Alpha_ANH_like_IV This 27.1 2.7E+02 0.0058 20.8 8.8 108 24-144 46-166 (194)
171 TIGR00238 KamA family protein. 27.0 3.5E+02 0.0076 22.1 8.7 22 53-74 240-261 (331)
172 TIGR02254 YjjG/YfnB HAD superf 26.7 2.6E+02 0.0057 20.5 7.1 33 2-36 102-134 (224)
173 TIGR01261 hisB_Nterm histidino 26.5 2.5E+02 0.0054 20.2 6.8 22 1-23 33-54 (161)
174 PRK15440 L-rhamnonate dehydrat 26.4 3E+02 0.0065 23.1 6.8 65 3-69 248-318 (394)
175 PF06080 DUF938: Protein of un 26.3 1.1E+02 0.0023 23.4 3.7 29 53-81 121-152 (204)
176 PRK10945 gene expression modul 25.9 75 0.0016 20.0 2.3 33 119-151 17-49 (72)
177 PF05221 AdoHcyase: S-adenosyl 25.5 1.8E+02 0.004 23.2 5.0 54 17-72 45-101 (268)
178 PRK09454 ugpQ cytoplasmic glyc 25.3 3.2E+02 0.0069 21.0 7.8 60 13-72 140-218 (249)
179 PF01408 GFO_IDH_MocA: Oxidore 25.2 2E+02 0.0044 18.8 9.8 86 5-99 15-114 (120)
180 TIGR03569 NeuB_NnaB N-acetylne 25.0 3E+02 0.0064 22.7 6.3 66 53-133 79-155 (329)
181 PRK07811 cystathionine gamma-s 25.0 4E+02 0.0087 22.1 7.5 51 23-74 134-187 (388)
182 PF00563 EAL: EAL domain; Int 25.0 1.6E+02 0.0036 21.7 4.7 60 3-70 137-210 (236)
183 PF13167 GTP-bdg_N: GTP-bindin 25.0 20 0.00044 23.8 -0.4 37 114-150 37-80 (95)
184 PRK08861 cystathionine gamma-s 24.9 4.1E+02 0.0089 22.2 8.3 64 12-77 115-181 (388)
185 PRK09490 metH B12-dependent me 24.9 4E+02 0.0088 26.3 7.9 57 18-74 434-491 (1229)
186 cd08561 GDPD_cytoplasmic_ScUgp 24.7 3.2E+02 0.007 20.9 8.1 67 6-72 125-221 (249)
187 PF15632 ATPgrasp_Ter: ATP-gra 24.6 1.1E+02 0.0025 25.1 3.9 58 2-68 11-71 (329)
188 PF00356 LacI: Bacterial regul 24.4 1.2E+02 0.0027 17.0 2.9 42 90-135 2-43 (46)
189 COG2861 Uncharacterized protei 24.3 3.6E+02 0.0078 21.3 7.2 17 58-74 168-184 (250)
190 TIGR01702 CO_DH_cata carbon-mo 24.1 2.1E+02 0.0046 25.8 5.6 23 3-25 419-445 (621)
191 COG1889 NOP1 Fibrillarin-like 24.0 88 0.0019 24.2 2.8 53 10-67 75-129 (231)
192 PHA02128 hypothetical protein 23.9 2.5E+02 0.0053 19.2 5.1 68 2-69 62-150 (151)
193 cd08583 PI-PLCc_GDPD_SF_unchar 23.9 3.3E+02 0.0071 20.7 7.4 22 14-35 133-154 (237)
194 PRK06806 fructose-bisphosphate 23.9 1.6E+02 0.0034 23.6 4.4 41 24-67 86-132 (281)
195 PRK14326 (dimethylallyl)adenos 23.9 4.9E+02 0.011 22.7 8.8 61 2-63 191-264 (502)
196 PRK13361 molybdenum cofactor b 23.9 3.9E+02 0.0085 21.6 7.7 11 54-64 174-184 (329)
197 PF01116 F_bP_aldolase: Fructo 23.9 1.5E+02 0.0031 23.9 4.3 42 24-68 85-132 (287)
198 PRK05414 urocanate hydratase; 23.7 1.2E+02 0.0026 26.6 3.9 46 1-46 221-267 (556)
199 PRK14469 ribosomal RNA large s 23.6 4.1E+02 0.0089 21.7 8.3 73 2-74 237-325 (343)
200 TIGR03677 rpl7ae 50S ribosomal 23.6 2.5E+02 0.0054 19.2 7.0 60 3-68 15-74 (117)
201 PF10281 Ish1: Putative stress 23.6 1.3E+02 0.0028 15.9 3.7 17 21-37 2-18 (38)
202 PRK13958 N-(5'-phosphoribosyl) 23.4 2.2E+02 0.0047 21.6 5.0 32 13-46 51-83 (207)
203 PRK00164 moaA molybdenum cofac 23.4 2.9E+02 0.0064 22.2 6.1 22 53-74 177-200 (331)
204 PLN02714 thiamin pyrophosphoki 23.2 3.5E+02 0.0076 20.8 6.4 57 53-133 67-133 (229)
205 TIGR00735 hisF imidazoleglycer 23.0 3.6E+02 0.0078 20.9 6.9 15 86-100 238-252 (254)
206 PRK14456 ribosomal RNA large s 23.0 4.5E+02 0.0097 21.9 7.7 21 54-74 333-353 (368)
207 PRK14463 ribosomal RNA large s 23.0 4.4E+02 0.0095 21.8 7.2 59 16-74 254-325 (349)
208 TIGR00381 cdhD CO dehydrogenas 23.0 2.6E+02 0.0057 23.6 5.6 51 22-74 200-251 (389)
209 cd01821 Rhamnogalacturan_acety 22.9 3E+02 0.0065 19.9 9.8 86 14-100 36-148 (198)
210 PF14177 YkyB: YkyB-like prote 22.8 81 0.0018 22.4 2.3 18 4-21 31-48 (140)
211 PRK00979 tetrahydromethanopter 22.6 4.3E+02 0.0093 21.6 7.8 45 18-65 99-148 (308)
212 cd08562 GDPD_EcUgpQ_like Glyce 22.5 3.3E+02 0.0072 20.3 6.6 64 7-72 123-208 (229)
213 COG2949 SanA Uncharacterized m 22.5 2.9E+02 0.0062 21.4 5.3 56 3-58 82-144 (235)
214 PRK11613 folP dihydropteroate 22.5 4.1E+02 0.0089 21.3 7.2 63 3-71 79-141 (282)
215 cd08607 GDPD_GDE5 Glycerophosp 22.4 3.9E+02 0.0084 21.0 7.6 30 6-35 166-195 (290)
216 PF01171 ATP_bind_3: PP-loop f 22.3 1.5E+02 0.0032 21.6 3.8 38 35-72 26-67 (182)
217 TIGR01686 FkbH FkbH-like domai 22.3 2.5E+02 0.0053 22.6 5.4 60 2-65 36-102 (320)
218 COG0135 TrpF Phosphoribosylant 22.3 3.6E+02 0.0078 20.6 7.3 65 4-73 41-108 (208)
219 PF01476 LysM: LysM domain; I 22.3 1E+02 0.0022 16.3 2.3 19 87-105 6-24 (44)
220 cd00378 SHMT Serine-glycine hy 22.2 2.9E+02 0.0062 22.6 5.9 50 23-72 148-198 (402)
221 PF01978 TrmB: Sugar-specific 22.1 1.1E+02 0.0023 18.3 2.6 19 2-20 39-57 (68)
222 PRK06552 keto-hydroxyglutarate 22.0 1.1E+02 0.0024 23.4 3.1 31 102-132 98-128 (213)
223 PRK12738 kbaY tagatose-bisphos 21.8 1.8E+02 0.0039 23.4 4.4 42 24-68 86-133 (286)
224 PF00578 AhpC-TSA: AhpC/TSA fa 21.8 2.4E+02 0.0052 18.4 5.0 29 12-40 57-85 (124)
225 PF07725 LRR_3: Leucine Rich R 21.7 43 0.00092 15.6 0.5 10 165-174 8-17 (20)
226 PF02268 TFIIA_gamma_N: Transc 21.7 77 0.0017 18.4 1.7 24 3-34 16-39 (49)
227 PF01729 QRPTase_C: Quinolinat 21.6 1.9E+02 0.0041 21.2 4.2 39 4-45 68-107 (169)
228 PRK14988 GMP/IMP nucleotidase; 21.6 3.6E+02 0.0078 20.3 7.1 35 1-36 97-131 (224)
229 PRK08942 D,D-heptose 1,7-bisph 21.6 3.2E+02 0.0069 19.7 6.9 23 1-24 33-55 (181)
230 PLN03244 alpha-amylase; Provis 21.5 81 0.0018 29.4 2.6 21 53-73 444-464 (872)
231 PRK00011 glyA serine hydroxyme 21.4 2.9E+02 0.0063 22.8 5.8 58 14-71 139-201 (416)
232 COG0352 ThiE Thiamine monophos 21.4 3.8E+02 0.0082 20.5 6.9 58 14-72 103-167 (211)
233 KOG2019 Metalloendoprotease HM 21.4 5.6E+02 0.012 23.9 7.6 52 98-150 469-530 (998)
234 cd08612 GDPD_GDE4 Glycerophosp 21.4 4.2E+02 0.0092 21.1 8.0 30 6-35 153-182 (300)
235 PF12816 Vps8: Golgi CORVET co 21.4 73 0.0016 24.0 2.0 57 3-64 5-67 (196)
236 cd00740 MeTr MeTr subgroup of 21.4 4E+02 0.0088 20.8 6.5 58 17-74 72-130 (252)
237 cd03317 NAAAR N-acylamino acid 21.4 4.5E+02 0.0098 21.3 7.1 66 3-70 217-286 (354)
238 COG0422 ThiC Thiamine biosynth 21.3 5.2E+02 0.011 22.0 8.0 66 3-79 166-232 (432)
239 PF13344 Hydrolase_6: Haloacid 21.3 2.5E+02 0.0054 18.4 4.8 37 1-38 18-57 (101)
240 PRK05660 HemN family oxidoredu 21.3 4.3E+02 0.0094 21.9 6.8 90 13-113 57-156 (378)
241 PF10668 Phage_terminase: Phag 21.2 1E+02 0.0022 18.6 2.2 18 88-105 23-40 (60)
242 PRK12737 gatY tagatose-bisphos 21.2 1.9E+02 0.004 23.3 4.4 42 24-68 86-133 (284)
243 PRK09058 coproporphyrinogen II 21.1 5.2E+02 0.011 22.0 10.3 62 13-74 113-184 (449)
244 PF02570 CbiC: Precorrin-8X me 21.1 2.6E+02 0.0056 21.3 4.9 76 55-132 53-138 (198)
245 PF13419 HAD_2: Haloacid dehal 21.1 2.8E+02 0.0062 18.9 7.4 35 1-36 81-115 (176)
246 PRK08045 cystathionine gamma-s 21.1 4.9E+02 0.011 21.6 8.4 70 4-74 106-178 (386)
247 PF07862 Nif11: Nitrogen fixat 20.8 1.1E+02 0.0024 17.1 2.3 23 120-142 26-48 (49)
248 TIGR01681 HAD-SF-IIIC HAD-supe 20.8 2E+02 0.0044 19.6 4.0 33 2-35 34-67 (128)
249 KOG0369 Pyruvate carboxylase [ 20.7 3.8E+02 0.0083 24.8 6.4 24 51-74 172-195 (1176)
250 cd01075 NAD_bind_Leu_Phe_Val_D 20.7 2.4E+02 0.0051 21.1 4.7 58 53-111 122-196 (200)
251 PRK09331 Sep-tRNA:Cys-tRNA syn 20.6 3.6E+02 0.0079 22.1 6.2 64 13-77 124-201 (387)
252 cd08556 GDPD Glycerophosphodie 20.6 3.2E+02 0.007 19.4 7.9 64 6-71 82-168 (189)
253 cd00950 DHDPS Dihydrodipicolin 20.5 3.4E+02 0.0074 21.2 5.8 59 14-72 70-135 (284)
254 PRK07315 fructose-bisphosphate 20.5 2E+02 0.0044 23.1 4.5 41 24-67 88-134 (293)
255 cd00947 TBP_aldolase_IIB Tagat 20.4 2.3E+02 0.005 22.6 4.7 42 24-68 81-128 (276)
256 PF14502 HTH_41: Helix-turn-he 20.4 1.9E+02 0.0041 16.7 3.4 31 87-117 6-38 (48)
257 COG2355 Zn-dependent dipeptida 20.4 3.8E+02 0.0082 22.0 6.0 29 118-146 270-299 (313)
258 PF05321 HHA: Haemolysin expre 20.3 58 0.0013 19.5 1.0 32 119-150 5-36 (57)
259 PLN02540 methylenetetrahydrofo 20.3 6.3E+02 0.014 22.6 7.9 65 3-68 115-202 (565)
260 PF00875 DNA_photolyase: DNA p 20.3 3.1E+02 0.0068 19.4 5.2 60 11-71 64-125 (165)
261 PF04567 RNA_pol_Rpb2_5: RNA p 20.1 89 0.0019 17.7 1.7 16 7-22 2-17 (48)
262 cd07153 Fur_like Ferric uptake 20.0 1.2E+02 0.0027 20.0 2.8 21 2-22 38-58 (116)
No 1
>COG0656 ARA1 Aldo/keto reductases, related to diketogulonate reductase [General function prediction only]
Probab=100.00 E-value=1.9e-36 Score=237.37 Aligned_cols=148 Identities=40% Similarity=0.691 Sum_probs=140.4
Q ss_pred CHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHhCCCCceEeccccCcccccHHHHHHHHhCCCeEEEecCCCCCCCCCC
Q 037019 1 GLWEAMEVCQRLGLTKFIGVSNFSSKKIEALLAFSTIPPSVNQVEMNPAWQQRQLREFCKSKSIIVNVFSPLGAVGSCWG 80 (175)
Q Consensus 1 e~~~~l~~l~~~GkIr~iGvS~~~~~~i~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~gi~vi~~~~l~~~G~l~~ 80 (175)
|+|++|++++++||||+||||||+++.++++++..++.|+++|++||++.++.+++++|+++||.+++|+||+. |-
T Consensus 121 etw~alE~l~~~G~ir~IGVSNF~~~~L~~l~~~~~~~p~~NQIe~hp~~~q~el~~~~~~~gI~v~AysPL~~-g~--- 196 (280)
T COG0656 121 ETWKALEELVDEGLIRAIGVSNFGVEHLEELLSLAKVKPAVNQIEYHPYLRQPELLPFCQRHGIAVEAYSPLAK-GG--- 196 (280)
T ss_pred HHHHHHHHHHhcCCccEEEeeCCCHHHHHHHHHhcCCCCceEEEEeccCCCcHHHHHHHHHcCCEEEEECCccc-cc---
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999996 32
Q ss_pred CccccChHHHHHHHHHhCCCHHHHHHHHHHhCCcEEEecCCCHHHHHHhhcccCcccCHHHHHHHhccCCCCCC
Q 037019 81 TNQVMNNEALKQIADAHGETVAQVCLRWIIEQGAIVIAKSFNKERLKENLDIFDWALTDHDYDRINQIPQHRMM 154 (175)
Q Consensus 81 ~~~~~~~~~l~~~a~~~g~~~~q~al~~~l~~~~~~i~G~~~~~~l~enl~a~~~~L~~~~~~~i~~~~~~~~~ 154 (175)
.++..+.+.++|++||.|++|++|+|+++++.++||.+++++|+++|++++++.||++||+.|+++......
T Consensus 197 --~l~~~~~l~~Ia~k~g~t~AQv~L~W~i~~gv~~Ipks~~~~ri~eN~~~~~f~Ls~ed~~~i~~l~~~~~~ 268 (280)
T COG0656 197 --KLLDNPVLAEIAKKYGKTPAQVALRWHIQRGVIVIPKSTTPERIRENLAAFDFELSEEDMAAIDALDRGYGR 268 (280)
T ss_pred --ccccChHHHHHHHHhCCCHHHHHHHHHHhCCcEEecCCCCHHHHHHHHhhhcCCCCHHHHHHHHhhccccCc
Confidence 166788999999999999999999999999999999999999999999999999999999999999987643
No 2
>KOG1577 consensus Aldo/keto reductase family proteins [General function prediction only]
Probab=100.00 E-value=2.7e-34 Score=225.65 Aligned_cols=151 Identities=44% Similarity=0.761 Sum_probs=142.7
Q ss_pred CHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHhCCCCceEeccccCcccccHHHHHHHHhCCCeEEEecCCCCCCCCCC
Q 037019 1 GLWEAMEVCQRLGLTKFIGVSNFSSKKIEALLAFSTIPPSVNQVEMNPAWQQRQLREFCKSKSIIVNVFSPLGAVGSCWG 80 (175)
Q Consensus 1 e~~~~l~~l~~~GkIr~iGvS~~~~~~i~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~gi~vi~~~~l~~~G~l~~ 80 (175)
++|++||++++.|++|+||||||+..++++++..+.++|+++|+++|+..++.++++||+++||.+.||+||++++. +
T Consensus 139 ~tW~amE~~~~~Gl~rsIGVSNF~~~~le~ll~~~ki~P~vnQvE~HP~~~Q~~L~~fCk~~~I~v~AYSpLg~~~~--~ 216 (300)
T KOG1577|consen 139 ETWKAMEKLVDEGLVRSIGVSNFNIKQLEELLNLAKIKPAVNQVECHPYLQQKKLVEFCKSKGIVVTAYSPLGSPGR--G 216 (300)
T ss_pred HHHHHHHHHHHcCCceEeeeecCCHHHHHHHHhcCCCCCccceeeccCCcChHHHHHHHhhCCcEEEEecCCCCCCC--c
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999998443 1
Q ss_pred CccccChHHHHHHHHHhCCCHHHHHHHHHHhCCcEEEecCCCHHHHHHhhcccCcccCHHHHHHHhccCCCCCC
Q 037019 81 TNQVMNNEALKQIADAHGETVAQVCLRWIIEQGAIVIAKSFNKERLKENLDIFDWALTDHDYDRINQIPQHRMM 154 (175)
Q Consensus 81 ~~~~~~~~~l~~~a~~~g~~~~q~al~~~l~~~~~~i~G~~~~~~l~enl~a~~~~L~~~~~~~i~~~~~~~~~ 154 (175)
.+++.++.+.++|++||.|++|++|||+++++.++||.++|+++|+||++.+++.|+++|++.|+......+.
T Consensus 217 -~~ll~~~~l~~iA~K~~kt~aQIlLrw~~q~g~~vipKS~~~~Ri~eN~~vfdf~Lt~ed~~~i~~~~~~~r~ 289 (300)
T KOG1577|consen 217 -SDLLEDPVLKEIAKKYNKTPAQILLRWALQRGVSVIPKSSNPERIKENFKVFDFELTEEDMKKLDSLNSNERY 289 (300)
T ss_pred -cccccCHHHHHHHHHhCCCHHHHHHHHHHhCCcEEEeccCCHHHHHHHHhhccccCCHHHHHHHhhcccccee
Confidence 1678899999999999999999999999999999999999999999999999999999999999988887764
No 3
>KOG1575 consensus Voltage-gated shaker-like K+ channel, subunit beta/KCNAB [Energy production and conversion]
Probab=100.00 E-value=3.3e-34 Score=228.83 Aligned_cols=159 Identities=28% Similarity=0.390 Sum_probs=144.8
Q ss_pred CHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHhCCCCceEeccccCccccc---HHHHHHHHhCCCeEEEecCCCCCCC
Q 037019 1 GLWEAMEVCQRLGLTKFIGVSNFSSKKIEALLAFSTIPPSVNQVEMNPAWQQ---RQLREFCKSKSIIVNVFSPLGAVGS 77 (175)
Q Consensus 1 e~~~~l~~l~~~GkIr~iGvS~~~~~~i~~~~~~~~~~~~~~q~~~~~~~~~---~~~~~~~~~~gi~vi~~~~l~~~G~ 77 (175)
|++++|.+++++|||||||+|+++.++|.++...++++++++|++||++.++ .+++++|++.||++++|+||++ |+
T Consensus 145 e~m~aL~~lve~Gki~yiGlSe~sa~~I~~a~~~~~~p~~s~Q~eysl~~Rd~ee~~i~~~c~~~Gi~li~ysPL~~-G~ 223 (336)
T KOG1575|consen 145 ETMRALTDLVEQGKIRYWGLSEWSAEEIREAHAVAPIPIVAVQVEYSLLSRDKEERGIIPLCRELGIGLIAWSPLGR-GL 223 (336)
T ss_pred HHHHHHHHHHhcCceEEEEeccCCHHHHHHHHHhcCCCceEeeeechhhhcchhhhhHHHHHHHcCcceEEeccccc-ce
Confidence 5799999999999999999999999999999999988899999999999997 5699999999999999999999 99
Q ss_pred CCCCccc---------------------------cChHHHHHHHHHhCCCHHHHHHHHHHhCC--cEEEecCCCHHHHHH
Q 037019 78 CWGTNQV---------------------------MNNEALKQIADAHGETVAQVCLRWIIEQG--AIVIAKSFNKERLKE 128 (175)
Q Consensus 78 l~~~~~~---------------------------~~~~~l~~~a~~~g~~~~q~al~~~l~~~--~~~i~G~~~~~~l~e 128 (175)
|++.... ...+.+.++|+++|+|++|+||+|+++++ ++||||+++++||+|
T Consensus 224 Ltgk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iA~k~g~T~~qlALawv~~~~~v~~pIpG~s~ve~l~e 303 (336)
T KOG1575|consen 224 LTGKYKLGEDSRNGDKRFQFLGLSPQTEEGDKQKPILEALSKIAEKHGCTVPQLALAWVLSNGKVSSPIPGASKIEQLKE 303 (336)
T ss_pred eccCcccccccccccccccccccccccchhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhCCCEEecCCCCcHHHHHH
Confidence 9864210 01245889999999999999999999999 999999999999999
Q ss_pred hhcccCcccCHHHHHHHhccCCCCCCCCcccc
Q 037019 129 NLDIFDWALTDHDYDRINQIPQHRMMPRDEYI 160 (175)
Q Consensus 129 nl~a~~~~L~~~~~~~i~~~~~~~~~~~~~~~ 160 (175)
|+.|+.+.|+++++..|++..+.....++++.
T Consensus 304 ni~Al~~~Lt~e~~~~l~~~~~~~~~~~~~~~ 335 (336)
T KOG1575|consen 304 NIGALSVKLTPEEIKELEEIIDKILGFGPRSI 335 (336)
T ss_pred HHhhhhccCCHHHHHHHHHhhccccCcCCCCC
Confidence 99999999999999999999998887776653
No 4
>PRK11172 dkgB 2,5-diketo-D-gluconate reductase B; Provisional
Probab=100.00 E-value=1e-32 Score=217.83 Aligned_cols=146 Identities=29% Similarity=0.426 Sum_probs=134.2
Q ss_pred CHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHhCCC-CceEeccccCcccccHHHHHHHHhCCCeEEEecCCCCCCCCC
Q 037019 1 GLWEAMEVCQRLGLTKFIGVSNFSSKKIEALLAFSTI-PPSVNQVEMNPAWQQRQLREFCKSKSIIVNVFSPLGAVGSCW 79 (175)
Q Consensus 1 e~~~~l~~l~~~GkIr~iGvS~~~~~~i~~~~~~~~~-~~~~~q~~~~~~~~~~~~~~~~~~~gi~vi~~~~l~~~G~l~ 79 (175)
++|++|++++++||||+||+|||+++.+.++++..+. +++++|++||++.++.+++++|+++||++++|+||++ |.+.
T Consensus 109 ~~~~~l~~l~~~Gkir~iGvSn~~~~~l~~~~~~~~~~~~~~~Q~~~~~~~~~~~ll~~~~~~gi~v~a~spl~~-G~~~ 187 (267)
T PRK11172 109 EFMQALLEAKKQGLTREIGISNFTIALMKQAIAAVGAENIATNQIELSPYLQNRKVVAFAKEHGIHVTSYMTLAY-GKVL 187 (267)
T ss_pred HHHHHHHHHHHCCCCCEEEEccCCHHHHHHHHHhcCCCCCeEEeeecCCCCCcHHHHHHHHHCCCEEEEECCCCC-Cccc
Confidence 4689999999999999999999999999999886653 6899999999999989999999999999999999998 7542
Q ss_pred CCccccChHHHHHHHHHhCCCHHHHHHHHHHhCCcEEEecCCCHHHHHHhhcccCcccCHHHHHHHhccCCCCC
Q 037019 80 GTNQVMNNEALKQIADAHGETVAQVCLRWIIEQGAIVIAKSFNKERLKENLDIFDWALTDHDYDRINQIPQHRM 153 (175)
Q Consensus 80 ~~~~~~~~~~l~~~a~~~g~~~~q~al~~~l~~~~~~i~G~~~~~~l~enl~a~~~~L~~~~~~~i~~~~~~~~ 153 (175)
..+.+.++|+++|+|++|+||+|+++++.++|+|+++++|+++|+++++++|++++++.|+++..+.+
T Consensus 188 ------~~~~l~~~a~~~~~s~aqval~w~l~~~~~~i~g~~~~~~l~~n~~~~~~~L~~~~~~~i~~~~~~~~ 255 (267)
T PRK11172 188 ------KDPVIARIAAKHNATPAQVILAWAMQLGYSVIPSSTKRENLASNLLAQDLQLDAEDMAAIAALDRNGR 255 (267)
T ss_pred ------CCHHHHHHHHHhCCCHHHHHHHHHHhCCCEeecCCCCHHHHHHHHhhcCCCcCHHHHHHHhhhccCCc
Confidence 34679999999999999999999999998899999999999999999999999999999999987543
No 5
>PRK11565 dkgA 2,5-diketo-D-gluconate reductase A; Provisional
Probab=99.98 E-value=2.5e-31 Score=210.79 Aligned_cols=148 Identities=34% Similarity=0.637 Sum_probs=136.1
Q ss_pred CHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHhCCCCceEeccccCcccccHHHHHHHHhCCCeEEEecCCCCCCCCCC
Q 037019 1 GLWEAMEVCQRLGLTKFIGVSNFSSKKIEALLAFSTIPPSVNQVEMNPAWQQRQLREFCKSKSIIVNVFSPLGAVGSCWG 80 (175)
Q Consensus 1 e~~~~l~~l~~~GkIr~iGvS~~~~~~i~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~gi~vi~~~~l~~~G~l~~ 80 (175)
++|++|++++++||||+||+|||+++++++++...++++.++|++||++.++.+++++|+++||++++|+||++ |.
T Consensus 118 ~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~v~~~~~Q~~~~~~~~~~~~~~~~~~~~i~~~a~spl~~-G~--- 193 (275)
T PRK11565 118 EAWKGMIELQKEGLIKSIGVCNFQIHHLQRLIDETGVTPVINQIELHPLMQQRQLHAWNATHKIQTESWSPLAQ-GG--- 193 (275)
T ss_pred HHHHHHHHHHHcCCeeEEeeccCCHHHHHHHHHhCCCCceeeeeecCCccchHHHHHHHHHCCCEEEEEccCCC-CC---
Confidence 47899999999999999999999999999998888888999999999999888999999999999999999987 52
Q ss_pred CccccChHHHHHHHHHhCCCHHHHHHHHHHhCCcEEEecCCCHHHHHHhhcccCcccCHHHHHHHhccCCCCC
Q 037019 81 TNQVMNNEALKQIADAHGETVAQVCLRWIIEQGAIVIAKSFNKERLKENLDIFDWALTDHDYDRINQIPQHRM 153 (175)
Q Consensus 81 ~~~~~~~~~l~~~a~~~g~~~~q~al~~~l~~~~~~i~G~~~~~~l~enl~a~~~~L~~~~~~~i~~~~~~~~ 153 (175)
......+.+.++|+++|+|++|+||+|+++++.++|+|+++++|+++|++++++.|++++++.|+++....+
T Consensus 194 -~~~~~~~~l~~ia~~~g~s~aq~aL~w~l~~~~~~I~g~~~~~~i~~n~~a~~~~Ls~~~~~~i~~~~~~~~ 265 (275)
T PRK11565 194 -KGVFDQKVIRDLADKYGKTPAQIVIRWHLDSGLVVIPKSVTPSRIAENFDVFDFRLDKDELGEIAKLDQGKR 265 (275)
T ss_pred -cccccCHHHHHHHHHhCCCHHHHHHHHHHcCCCEeeCCCCCHHHHHHHHhccCCCcCHHHHHHHHhhcccCC
Confidence 123346889999999999999999999999998899999999999999999999999999999999987654
No 6
>PF00248 Aldo_ket_red: Aldo/keto reductase family; InterPro: IPR023210 The aldo-keto reductase family includes a number of related monomeric NADPH-dependent oxidoreductases, such as aldehyde reductase, aldose reductase, prostaglandin F synthase, xylose reductase, rho crystallin, and many others []. All possess a similar structure, with a beta-alpha-beta fold characteristic of nucleotide binding proteins []. The fold comprises a parallel beta-8/alpha-8-barrel, which contains a novel NADP-binding motif. The binding site is located in a large, deep, elliptical pocket in the C-terminal end of the beta sheet, the substrate being bound in an extended conformation. The hydrophobic nature of the pocket favours aromatic and apolar substrates over highly polar ones []. Binding of the NADPH coenzyme causes a massive conformational change, reorienting a loop, effectively locking the coenzyme in place. This binding is more similar to FAD- than to NAD(P)-binding oxidoreductases []. Some proteins of this entry contain a K+ ion channel beta chain regulatory domain; these are reported to have oxidoreductase activity []. This entry represents the NADP-dependent oxidoreductase domain found in these proteins.; PDB: 1C9W_A 4F40_B 1VBJ_A 1XGD_A 1X97_A 2ACS_A 1EF3_A 2ACU_A 1PWM_A 2NVD_A ....
Probab=99.97 E-value=1.6e-30 Score=206.31 Aligned_cols=148 Identities=38% Similarity=0.629 Sum_probs=126.7
Q ss_pred CHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHhCCCCceEeccccCcccc--cHHHHHHHHhCCCeEEEecCCCCCCCC
Q 037019 1 GLWEAMEVCQRLGLTKFIGVSNFSSKKIEALLAFSTIPPSVNQVEMNPAWQ--QRQLREFCKSKSIIVNVFSPLGAVGSC 78 (175)
Q Consensus 1 e~~~~l~~l~~~GkIr~iGvS~~~~~~i~~~~~~~~~~~~~~q~~~~~~~~--~~~~~~~~~~~gi~vi~~~~l~~~G~l 78 (175)
++|++|++++++||||+||||||+++.++++.....++|+++|++||++.+ ..+++++|+++||++++++|+++ |+|
T Consensus 117 ~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~~~l~~-G~l 195 (283)
T PF00248_consen 117 EVWEALEELKKEGKIRHIGVSNFSPEQLEAALKIGSIPPDVVQINYNLLNRREEEGLLEFCREHGIGVIAYSPLAG-GLL 195 (283)
T ss_dssp HHHHHHHHHHHTTSEEEEEEES--HHHHHHHHTCTSS-ESEEEEE-BTTBHBGGHHHHHHHHHTT-EEEEESTTGG-GCG
T ss_pred hhhhhhhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-Ccc
Confidence 479999999999999999999999999999977777899999999999943 48899999999999999999999 998
Q ss_pred CCCcc--------------ccChHHHHHHHHHhCCCHHHHHHHHHHhCC--cEEEecCCCHHHHHHhhcccCcccCHHHH
Q 037019 79 WGTNQ--------------VMNNEALKQIADAHGETVAQVCLRWIIEQG--AIVIAKSFNKERLKENLDIFDWALTDHDY 142 (175)
Q Consensus 79 ~~~~~--------------~~~~~~l~~~a~~~g~~~~q~al~~~l~~~--~~~i~G~~~~~~l~enl~a~~~~L~~~~~ 142 (175)
.+... ....+.+.++++++|++++|+|++|+++++ .++|+|+++++|+++|+++++.+|+++++
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~g~s~~q~al~~~l~~~~~~~~i~g~~~~~~l~en~~a~~~~L~~~~~ 275 (283)
T PF00248_consen 196 TGKYKSPPPPPSRASLRDAQELADALRELAEEHGVSPAQLALRWVLSHPGVASVIVGASSPEHLEENLAALDFPLTEEEL 275 (283)
T ss_dssp GTTTTTTTTSTTTSGSSTHGGGHHHHHHHHHHHTSSHHHHHHHHHHTSHTTEEEEEB-SSHHHHHHHHGGSSSG--HHHH
T ss_pred ccccccCCCcccccccchhhhhhhhhhhhhhhcccccchhhhhhhhhccccccccCCCCCHHHHHHHHHHhCCCCCHHHH
Confidence 64321 145588999999999999999999999876 99999999999999999999999999999
Q ss_pred HHHhccC
Q 037019 143 DRINQIP 149 (175)
Q Consensus 143 ~~i~~~~ 149 (175)
+.|+++.
T Consensus 276 ~~i~~~~ 282 (283)
T PF00248_consen 276 AEIDQIL 282 (283)
T ss_dssp HHHHTTH
T ss_pred HHHHhhh
Confidence 9999864
No 7
>PRK09912 L-glyceraldehyde 3-phosphate reductase; Provisional
Probab=99.97 E-value=1.7e-30 Score=212.08 Aligned_cols=150 Identities=19% Similarity=0.346 Sum_probs=130.7
Q ss_pred CHHHHHHHHHHcCCccEEEecCCCHHHHHHHHH---hCCCCceEeccccCccccc---HHHHHHHHhCCCeEEEecCCCC
Q 037019 1 GLWEAMEVCQRLGLTKFIGVSNFSSKKIEALLA---FSTIPPSVNQVEMNPAWQQ---RQLREFCKSKSIIVNVFSPLGA 74 (175)
Q Consensus 1 e~~~~l~~l~~~GkIr~iGvS~~~~~~i~~~~~---~~~~~~~~~q~~~~~~~~~---~~~~~~~~~~gi~vi~~~~l~~ 74 (175)
|+|++|++|+++||||+||+|||++++++++.+ ..++++.++|++||++++. .+++++|+++||++++|+||++
T Consensus 148 e~~~al~~l~~~GkIr~iGvSn~~~~~~~~~~~~~~~~~~~~~~~Q~~ynll~~~~~~~~ll~~~~~~gI~via~spl~~ 227 (346)
T PRK09912 148 ETASALAHAVQSGKALYVGISSYSPERTQKMVELLREWKIPLLIHQPSYNLLNRWVDKSGLLDTLQNNGVGCIAFTPLAQ 227 (346)
T ss_pred HHHHHHHHHHHcCCeeEEEecCCCHHHHHHHHHHHHhcCCCcEEeeccCCceecccchhhHHHHHHHcCceEEEehhhcC
Confidence 478999999999999999999999999886654 3456789999999999984 4699999999999999999999
Q ss_pred CCCCCCCcc--------c--------------c------ChHHHHHHHHHhCCCHHHHHHHHHHhCC--cEEEecCCCHH
Q 037019 75 VGSCWGTNQ--------V--------------M------NNEALKQIADAHGETVAQVCLRWIIEQG--AIVIAKSFNKE 124 (175)
Q Consensus 75 ~G~l~~~~~--------~--------------~------~~~~l~~~a~~~g~~~~q~al~~~l~~~--~~~i~G~~~~~ 124 (175)
|+|++... . . ..+.+.++|+++|++++|+||+|+++++ .++|+|+++++
T Consensus 228 -G~Lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~g~t~aq~AL~w~l~~~~v~~~i~G~~~~~ 306 (346)
T PRK09912 228 -GLLTGKYLNGIPQDSRMHREGNKVRGLTPKMLTEANLNSLRLLNEMAQQRGQSMAQMALSWLLKDERVTSVLIGASRAE 306 (346)
T ss_pred -ccccCCCCCCCCCCccccccccchhhhchhhccHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeEEEeCCCCHH
Confidence 99976310 0 0 0256788999999999999999999998 78899999999
Q ss_pred HHHHhhccc-CcccCHHHHHHHhccCCC
Q 037019 125 RLKENLDIF-DWALTDHDYDRINQIPQH 151 (175)
Q Consensus 125 ~l~enl~a~-~~~L~~~~~~~i~~~~~~ 151 (175)
||++|++++ .++|++++++.|+++.+.
T Consensus 307 ql~en~~a~~~~~L~~e~~~~l~~~~~~ 334 (346)
T PRK09912 307 QLEENVQALNNLTFSTEELAQIDQHIAD 334 (346)
T ss_pred HHHHHHhhhcCCCCCHHHHHHHHHhhCc
Confidence 999999998 579999999999998654
No 8
>TIGR01293 Kv_beta voltage-dependent potassium channel beta subunit, animal. Plant beta subunits and their closely related bacterial homologs (in Deinococcus radiudurans, Xylella fastidiosa, etc.) appear more closely related to each other than to animal forms. However, the bacterial species lack convincing counterparts the Kv alpha subunit and the Kv beta homolog may serve as an enzyme. Cutoffs are set for this model such that yeast and plant forms and bacterial close homologs score between trusted and noise cutoffs.
Probab=99.97 E-value=1.2e-30 Score=210.60 Aligned_cols=147 Identities=25% Similarity=0.358 Sum_probs=127.8
Q ss_pred CHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHhCC----CCceEeccccCccccc---HHHHHHHHhCCCeEEEecCCC
Q 037019 1 GLWEAMEVCQRLGLTKFIGVSNFSSKKIEALLAFST----IPPSVNQVEMNPAWQQ---RQLREFCKSKSIIVNVFSPLG 73 (175)
Q Consensus 1 e~~~~l~~l~~~GkIr~iGvS~~~~~~i~~~~~~~~----~~~~~~q~~~~~~~~~---~~~~~~~~~~gi~vi~~~~l~ 73 (175)
|+|++|++++++||||+||+|||+.+++.++...+. ++++++|++||+++++ .+++++|+++||++++|+||+
T Consensus 130 e~~~aL~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~~~~~~~~~~Q~~~~l~~r~~~e~~l~~~~~~~gi~v~a~spl~ 209 (317)
T TIGR01293 130 ETVRAMTYVINQGMAMYWGTSRWSSMEIMEAYSVARQFNLIPPICEQAEYHMFQREKVEVQLPELYHKIGVGAMTWSPLA 209 (317)
T ss_pred HHHHHHHHHHHcCCeeEEEecCCCHHHHHHHHHHHHHcCCCCcceeccccChHhcchhHHHHHHHHHHcCCeEEEecccc
Confidence 478999999999999999999999999887754322 5789999999999885 369999999999999999999
Q ss_pred CCCCCCCCcc--c---------------------------cChHHHHHHHHHhCCCHHHHHHHHHHhCC--cEEEecCCC
Q 037019 74 AVGSCWGTNQ--V---------------------------MNNEALKQIADAHGETVAQVCLRWIIEQG--AIVIAKSFN 122 (175)
Q Consensus 74 ~~G~l~~~~~--~---------------------------~~~~~l~~~a~~~g~~~~q~al~~~l~~~--~~~i~G~~~ 122 (175)
+ |+|++... . ...+.+.++|+++|++++|+|++|+++++ +++|+|+++
T Consensus 210 ~-G~Ltg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~aqlal~w~l~~~~v~~~i~G~~~ 288 (317)
T TIGR01293 210 C-GLVSGKYDSGIPPYSRATLKGYQWLKDKILSEEGRRQQARLKDLQAIAERLGCTLPQLAIAWCLRNEGVSSVLLGASS 288 (317)
T ss_pred c-cccCCCCCCCCCCcccccccccchhhhhhcchhhHHHHHHHHHHHHHHHHHCcCHHHHHHHHHhcCCCCeEEEeCCCC
Confidence 9 99975310 0 00146888999999999999999999997 679999999
Q ss_pred HHHHHHhhcccCc--ccCHHHHHHHhcc
Q 037019 123 KERLKENLDIFDW--ALTDHDYDRINQI 148 (175)
Q Consensus 123 ~~~l~enl~a~~~--~L~~~~~~~i~~~ 148 (175)
++|+++|+++++. +|++++++.|+++
T Consensus 289 ~~ql~en~~a~~~~~~Ls~e~~~~l~~~ 316 (317)
T TIGR01293 289 AEQLMENLGSLQVLPKLSSSIIHEIDSI 316 (317)
T ss_pred HHHHHHHHHHhhccCCCCHHHHHHHHhh
Confidence 9999999999987 9999999999864
No 9
>COG0667 Tas Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) [Energy production and conversion]
Probab=99.97 E-value=6.6e-30 Score=205.95 Aligned_cols=149 Identities=30% Similarity=0.444 Sum_probs=133.7
Q ss_pred CHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHhCCCCceEeccccCccccc--HHHHHHHHhCCCeEEEecCCCCCCCC
Q 037019 1 GLWEAMEVCQRLGLTKFIGVSNFSSKKIEALLAFSTIPPSVNQVEMNPAWQQ--RQLREFCKSKSIIVNVFSPLGAVGSC 78 (175)
Q Consensus 1 e~~~~l~~l~~~GkIr~iGvS~~~~~~i~~~~~~~~~~~~~~q~~~~~~~~~--~~~~~~~~~~gi~vi~~~~l~~~G~l 78 (175)
|++.+|.+|+++||||+||+||++.+++.++++.+ .+++++|.+||+++++ .+++++|+++||++++|+||++ |+|
T Consensus 136 e~~~aL~~l~~~G~ir~iG~S~~~~~~i~~a~~~~-~~~~~~Q~~ynl~~R~~e~~l~~~~~~~gi~~~~~spla~-G~L 213 (316)
T COG0667 136 ETLEALDELVREGKIRYIGVSNYSAEQIAEALAVA-APIDSLQPEYNLLERDAEKELLPLCREEGIGLLAYSPLAS-GLL 213 (316)
T ss_pred HHHHHHHHHHHcCCeeEEEecCCCHHHHHHHHHhc-CCceeecccCccccccchhHHHHHHHHcCCeEEEecCccc-ccc
Confidence 46899999999999999999999999999999886 5789999999999975 4599999999999999999999 999
Q ss_pred CCCccc----------c------------ChHHHHHHHHHhCCCHHHHHHHHHHhCC--cEEEecCCCHHHHHHhhcccC
Q 037019 79 WGTNQV----------M------------NNEALKQIADAHGETVAQVCLRWIIEQG--AIVIAKSFNKERLKENLDIFD 134 (175)
Q Consensus 79 ~~~~~~----------~------------~~~~l~~~a~~~g~~~~q~al~~~l~~~--~~~i~G~~~~~~l~enl~a~~ 134 (175)
++...- . ....+.++|+++|++++|+||+|+++++ +++|+|+++++||++|+++++
T Consensus 214 tgk~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~~a~~~g~t~aq~ALawvl~~~~v~~~I~Ga~~~~qL~en~~A~~ 293 (316)
T COG0667 214 TGKYLPGPEGSRASELPRFQRELTERGLAILRALEELAKELGATPAQVALAWVLAQPGVTSPIVGASKAEQLEENLAALD 293 (316)
T ss_pred CCCcCCCcchhhccccccchhhhhHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCceEeecCCCHHHHHHHHHHhc
Confidence 875221 0 0145888999999999999999999998 899999999999999999999
Q ss_pred cccCHHHHHHHhccCCC
Q 037019 135 WALTDHDYDRINQIPQH 151 (175)
Q Consensus 135 ~~L~~~~~~~i~~~~~~ 151 (175)
..|++++++.|+.....
T Consensus 294 ~~L~~~~~~~l~~~~~~ 310 (316)
T COG0667 294 IKLSEEELAALDEISAE 310 (316)
T ss_pred CCCCHHHHHHHHHHhhh
Confidence 99999999999977653
No 10
>PRK10625 tas putative aldo-keto reductase; Provisional
Probab=99.97 E-value=3.6e-30 Score=210.12 Aligned_cols=149 Identities=23% Similarity=0.254 Sum_probs=129.9
Q ss_pred CHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHh---CC-CCceEeccccCccccc--HHHHHHHHhCCCeEEEecCCCC
Q 037019 1 GLWEAMEVCQRLGLTKFIGVSNFSSKKIEALLAF---ST-IPPSVNQVEMNPAWQQ--RQLREFCKSKSIIVNVFSPLGA 74 (175)
Q Consensus 1 e~~~~l~~l~~~GkIr~iGvS~~~~~~i~~~~~~---~~-~~~~~~q~~~~~~~~~--~~~~~~~~~~gi~vi~~~~l~~ 74 (175)
|+|++|++|+++||||+||+|||+.+.+.+++.. .. ..+.++|++||++++. .+++++|+++||++++|+||++
T Consensus 159 e~~~aL~~l~~~GkIr~iGvSn~~~~~l~~~~~~~~~~~~~~~~~~q~~y~l~~r~~~~~ll~~~~~~gi~via~spL~~ 238 (346)
T PRK10625 159 ETLDALAEQQRAGKIRYIGVSNETAFGVMRYLHLAEKHDLPRIVTIQNPYSLLNRSFEVGLAEVSQYEGVELLAYSCLAF 238 (346)
T ss_pred HHHHHHHHHHHCCCeEEEEecCCCHHHHHHHHHHHHHcCCCCcEEecCCCCcccccchhHHHHHHHHcCCeEEEeccccC
Confidence 4699999999999999999999999998876542 22 3578999999999876 5799999999999999999999
Q ss_pred CCCCCCCc-----------ccc-------------ChHHHHHHHHHhCCCHHHHHHHHHHhCC--cEEEecCCCHHHHHH
Q 037019 75 VGSCWGTN-----------QVM-------------NNEALKQIADAHGETVAQVCLRWIIEQG--AIVIAKSFNKERLKE 128 (175)
Q Consensus 75 ~G~l~~~~-----------~~~-------------~~~~l~~~a~~~g~~~~q~al~~~l~~~--~~~i~G~~~~~~l~e 128 (175)
|+|++.. ... ..+.+.++|+++|++++|+||+|+++++ +++|+|+++++||++
T Consensus 239 -G~Ltg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~g~t~aqval~w~l~~~~v~~~I~G~~~~~~l~e 317 (346)
T PRK10625 239 -GTLTGKYLNGAKPAGARNTLFSRFTRYSGEQTQKAVAAYVDIAKRHGLDPAQMALAFVRRQPFVASTLLGATTMEQLKT 317 (346)
T ss_pred -eeccCCCCCCCCCCCcccccccccccccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeeEEeCCCCHHHHHH
Confidence 9997531 001 1257889999999999999999999999 568999999999999
Q ss_pred hhcccCcccCHHHHHHHhccCC
Q 037019 129 NLDIFDWALTDHDYDRINQIPQ 150 (175)
Q Consensus 129 nl~a~~~~L~~~~~~~i~~~~~ 150 (175)
|+++.+++|++++++.|+++.+
T Consensus 318 n~~a~~~~L~~~~~~~l~~~~~ 339 (346)
T PRK10625 318 NIESLHLTLSEEVLAEIEAVHQ 339 (346)
T ss_pred HHhhccCCCCHHHHHHHHHHHh
Confidence 9999999999999999999864
No 11
>cd06660 Aldo_ket_red Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. AKRs are present in all phyla and are of importance to both health and industrial applications. Members have very distinct functions and include the prokaryotic 2,5-diketo-D-gluconic acid reductases and beta-keto ester reductases, the eukaryotic aldose reductases, aldehyde reductases, hydroxysteroid dehydrogenases, steroid 5beta-reductases, potassium channel beta-subunits and aflatoxin aldehyde reductases, among others.
Probab=99.97 E-value=2e-29 Score=200.22 Aligned_cols=147 Identities=40% Similarity=0.576 Sum_probs=133.5
Q ss_pred CHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHhCCCCceEeccccCcccccH--HHHHHHHhCCCeEEEecCCCCCCCC
Q 037019 1 GLWEAMEVCQRLGLTKFIGVSNFSSKKIEALLAFSTIPPSVNQVEMNPAWQQR--QLREFCKSKSIIVNVFSPLGAVGSC 78 (175)
Q Consensus 1 e~~~~l~~l~~~GkIr~iGvS~~~~~~i~~~~~~~~~~~~~~q~~~~~~~~~~--~~~~~~~~~gi~vi~~~~l~~~G~l 78 (175)
++|++|+++|++||||+||+|||+++.+.++++.+..+|+++|++||++++.. +++++|+++||++++|+||++ |.+
T Consensus 128 ~~~~~l~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~~~~~l~~-g~l 206 (285)
T cd06660 128 ETLRALEELVKEGKIRAIGVSNFSAEQLEEALAAAGVPPAVNQVEYNLLDRQAEEELLPYCREHGIGVIAYSPLAG-GLL 206 (285)
T ss_pred HHHHHHHHHHHcCCccEEEeeCCCHHHHHHHHHhhCCCceEEecccCcccCchHHHHHHHHHHcCcEEEEeccccC-cee
Confidence 57999999999999999999999999999999887779999999999999985 499999999999999999999 988
Q ss_pred CCCcccc-------ChHHHHHHHHHhCCCHHHHHHHHHHhCC--cEEEecCCCHHHHHHhhcccCcccCHHHHHHHhcc
Q 037019 79 WGTNQVM-------NNEALKQIADAHGETVAQVCLRWIIEQG--AIVIAKSFNKERLKENLDIFDWALTDHDYDRINQI 148 (175)
Q Consensus 79 ~~~~~~~-------~~~~l~~~a~~~g~~~~q~al~~~l~~~--~~~i~G~~~~~~l~enl~a~~~~L~~~~~~~i~~~ 148 (175)
.+..... ....+..++++++.+++|+|++|+++++ .++|+|+++++|+++|+++...+|++++++.|+++
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~q~al~~~l~~p~~~~~i~g~~~~~~l~~n~~~~~~~L~~~~~~~l~~~ 285 (285)
T cd06660 207 TGKYLPGAPPPEGDLLEALKEIAEKHGVTPAQVALRWLLQQPGVTSVIPGASSPERLEENLAALDFELSDEDLAALDAL 285 (285)
T ss_pred cCCCCCCCCCChhhHHHHHHHHHHHhCCCHHHHHHHHHhcCCCCeEEEeCCCCHHHHHHHHhhccCCCCHHHHHHHhhC
Confidence 6543221 1367889999999999999999999997 89999999999999999999999999999999863
No 12
>PRK10376 putative oxidoreductase; Provisional
Probab=99.96 E-value=3.8e-29 Score=199.69 Aligned_cols=141 Identities=23% Similarity=0.344 Sum_probs=127.0
Q ss_pred CHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHhCCCCceEeccccCccccc-HHHHHHHHhCCCeEEEecCCCCCCCCC
Q 037019 1 GLWEAMEVCQRLGLTKFIGVSNFSSKKIEALLAFSTIPPSVNQVEMNPAWQQ-RQLREFCKSKSIIVNVFSPLGAVGSCW 79 (175)
Q Consensus 1 e~~~~l~~l~~~GkIr~iGvS~~~~~~i~~~~~~~~~~~~~~q~~~~~~~~~-~~~~~~~~~~gi~vi~~~~l~~~G~l~ 79 (175)
|+|++|++|+++||||+||+|||+++.+.++.+.. +++++|++||++++. .+++++|+++||++++|+||++ +.
T Consensus 145 ~~~~~l~~l~~~Gkir~iGvSn~~~~~l~~~~~~~--~~~~~q~~~~~~~~~~~~~~~~~~~~gi~v~a~~pL~g-~~-- 219 (290)
T PRK10376 145 EPLTVLAELQRQGLVRHIGLSNVTPTQVAEARKIA--EIVCVQNHYNLAHRADDALIDALARDGIAYVPFFPLGG-FT-- 219 (290)
T ss_pred HHHHHHHHHHHCCceeEEEecCCCHHHHHHHHhhC--CeEEEecccCCCcCChHHHHHHHHHcCCEEEEeecCCC-CC--
Confidence 47899999999999999999999999999988775 579999999999886 6799999999999999999976 31
Q ss_pred CCccccChHHHHHHHHHhCCCHHHHHHHHHHhCC--cEEEecCCCHHHHHHhhcccCcccCHHHHHHHhccCC
Q 037019 80 GTNQVMNNEALKQIADAHGETVAQVCLRWIIEQG--AIVIAKSFNKERLKENLDIFDWALTDHDYDRINQIPQ 150 (175)
Q Consensus 80 ~~~~~~~~~~l~~~a~~~g~~~~q~al~~~l~~~--~~~i~G~~~~~~l~enl~a~~~~L~~~~~~~i~~~~~ 150 (175)
....+.+.++|+++|++++|+|++|+++++ +++|+|+++++|+++|++++++.|++++++.|+++..
T Consensus 220 ----~~~~~~l~~ia~~~~~t~aq~al~w~l~~~~~~~~i~G~~~~~~l~en~~a~~~~L~~e~~~~l~~~~~ 288 (290)
T PRK10376 220 ----PLQSSTLSDVAASLGATPMQVALAWLLQRSPNILLIPGTSSVAHLRENLAAAELVLSEEVLAELDGIAR 288 (290)
T ss_pred ----hhhhHHHHHHHHHhCCCHHHHHHHHHHhCCCCeeEeeCCCCHHHHHHHHhhccCCCCHHHHHHHHHHHh
Confidence 123578999999999999999999999884 7789999999999999999999999999999998754
No 13
>COG4989 Predicted oxidoreductase [General function prediction only]
Probab=99.96 E-value=2.9e-28 Score=185.66 Aligned_cols=151 Identities=23% Similarity=0.378 Sum_probs=137.3
Q ss_pred CHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHhCCCCceEeccccCccccc---HHHHHHHHhCCCeEEEecCCCCCCC
Q 037019 1 GLWEAMEVCQRLGLTKFIGVSNFSSKKIEALLAFSTIPPSVNQVEMNPAWQQ---RQLREFCKSKSIIVNVFSPLGAVGS 77 (175)
Q Consensus 1 e~~~~l~~l~~~GkIr~iGvS~~~~~~i~~~~~~~~~~~~~~q~~~~~~~~~---~~~~~~~~~~gi~vi~~~~l~~~G~ 77 (175)
|+-+++..|.+.||||++|||||+|.+++.+.+..+.++++||+++|+.... .+.+++|+.+.|.+++||||+++|+
T Consensus 137 eVAeAf~~L~~sGKVr~fGVSNf~p~Q~~LL~s~l~~~LvtNQlelS~~~~~~~~DGtLd~~q~~~v~pmaWSpl~gG~~ 216 (298)
T COG4989 137 EVAEAFTHLHKSGKVRHFGVSNFNPAQFELLQSRLPFTLVTNQLELSPLHTPMLLDGTLDYCQQLRVRPMAWSPLGGGGL 216 (298)
T ss_pred HHHHHHHHHHhcCCeeeeecCCCCHHHHHHHHHhccchhhhcceeeccccccccccchHHHHHHcCCCcccccccCCCcc
Confidence 4678999999999999999999999999999999888899999999999886 6799999999999999999999667
Q ss_pred CCCCcccc-ChHHHHHHHHHhC-CCHHHHHHHHHHhCC--cEEEecCCCHHHHHHhhcccCcccCHHHHHHHhccCCC
Q 037019 78 CWGTNQVM-NNEALKQIADAHG-ETVAQVCLRWIIEQG--AIVIAKSFNKERLKENLDIFDWALTDHDYDRINQIPQH 151 (175)
Q Consensus 78 l~~~~~~~-~~~~l~~~a~~~g-~~~~q~al~~~l~~~--~~~i~G~~~~~~l~enl~a~~~~L~~~~~~~i~~~~~~ 151 (175)
|.+...+. -+..+..+|.++| .+..+++++|++.+| ..+|+|+.++++|++.++|.++.||.++|-+|-++..+
T Consensus 217 F~g~~~~q~l~~~l~~ia~e~ga~s~~~VaiAWllR~Pa~~~PiiGt~~~eRi~~a~~Al~~~LtRqqWf~Iy~Aa~G 294 (298)
T COG4989 217 FLGDDKFQRLRKVLDRIAEEYGAVSITAVAIAWLLRHPAKPQPIIGTGNLERIRAAIKALSLTLTRQQWFEIYTAAIG 294 (298)
T ss_pred ccCCcchHHHHHHHHHHHHHhCcccHHHHHHHHHHhCcCcccceecCCCHHHHHHHHHHhhccccHHHHHHHHHHhcc
Confidence 77643332 3588899999999 799999999999999 88999999999999999999999999999999887643
No 14
>PLN02587 L-galactose dehydrogenase
Probab=99.96 E-value=1.1e-27 Score=193.21 Aligned_cols=150 Identities=14% Similarity=0.174 Sum_probs=126.8
Q ss_pred CHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHhCC---CCceEeccccCccccc-HHHHHHHHhCCCeEEEecCCCCCC
Q 037019 1 GLWEAMEVCQRLGLTKFIGVSNFSSKKIEALLAFST---IPPSVNQVEMNPAWQQ-RQLREFCKSKSIIVNVFSPLGAVG 76 (175)
Q Consensus 1 e~~~~l~~l~~~GkIr~iGvS~~~~~~i~~~~~~~~---~~~~~~q~~~~~~~~~-~~~~~~~~~~gi~vi~~~~l~~~G 76 (175)
|+|++|++++++||||+||+|||+++++..+..... +.+.++|+.||+.++. .+++++|+++||++++|+||++ |
T Consensus 132 ~~~~~l~~l~~~Gkir~iGvSn~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~~~~~gi~v~a~spl~~-G 210 (314)
T PLN02587 132 ETIPALQKLKESGKVRFIGITGLPLAIFTYVLDRVPPGTVDVILSYCHYSLNDSSLEDLLPYLKSKGVGVISASPLAM-G 210 (314)
T ss_pred HHHHHHHHHHHCCCeEEEEecCCCHHHHHHHHHhhhcCCCCeEEeccccCcchhhHHHHHHHHHHcCceEEEechhhc-c
Confidence 468999999999999999999999998887765432 3455678999987764 5899999999999999999999 9
Q ss_pred CCCCCcccc----------ChHHHHHHHHHhCCCHHHHHHHHHHhCC--cEEEecCCCHHHHHHhhcccCc----ccCHH
Q 037019 77 SCWGTNQVM----------NNEALKQIADAHGETVAQVCLRWIIEQG--AIVIAKSFNKERLKENLDIFDW----ALTDH 140 (175)
Q Consensus 77 ~l~~~~~~~----------~~~~l~~~a~~~g~~~~q~al~~~l~~~--~~~i~G~~~~~~l~enl~a~~~----~L~~~ 140 (175)
+|++..... ..+.+.++|+++|+|++|+||+|+++++ +++|+|+++++||++|+++++. +|+++
T Consensus 211 ~L~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~s~aq~al~~~l~~~~v~~~i~G~~~~~~l~~nl~a~~~~~~~~l~~~ 290 (314)
T PLN02587 211 LLTENGPPEWHPAPPELKSACAAAATHCKEKGKNISKLALQYSLSNKDISTTLVGMNSVQQVEENVAAATELETSGIDEE 290 (314)
T ss_pred ccCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeeEEecCCCHHHHHHHHHHHhhcccCCCCHH
Confidence 998642100 1245678999999999999999999999 6789999999999999999763 79999
Q ss_pred HHHHHhccCCC
Q 037019 141 DYDRINQIPQH 151 (175)
Q Consensus 141 ~~~~i~~~~~~ 151 (175)
+++.|+++...
T Consensus 291 ~~~~l~~~~~~ 301 (314)
T PLN02587 291 LLSEVEAILAP 301 (314)
T ss_pred HHHHHHHhhcc
Confidence 99999988763
No 15
>PRK14863 bifunctional regulator KidO; Provisional
Probab=99.96 E-value=3.5e-28 Score=194.21 Aligned_cols=145 Identities=16% Similarity=0.133 Sum_probs=124.5
Q ss_pred HHHHHHHHHHcCCccEEEecCCCHHHHHHHHHhCCCCceEeccccCccccc---HHHHHHHHhCCCeEEEecCCCCCCCC
Q 037019 2 LWEAMEVCQRLGLTKFIGVSNFSSKKIEALLAFSTIPPSVNQVEMNPAWQQ---RQLREFCKSKSIIVNVFSPLGAVGSC 78 (175)
Q Consensus 2 ~~~~l~~l~~~GkIr~iGvS~~~~~~i~~~~~~~~~~~~~~q~~~~~~~~~---~~~~~~~~~~gi~vi~~~~l~~~G~l 78 (175)
+|++|++++++||||+||+|||+++++..+... .+|+++|++||+++++ .+++++|+++||++++|+||++ |+|
T Consensus 123 ~~~~l~~l~~~Gkir~iGvSn~~~~~~~~~~~~--~~~~~~Q~~~n~l~~~~~~~~~l~~~~~~gi~v~a~spl~~-G~L 199 (292)
T PRK14863 123 LWERLQALKDQGLFAKIGVSAHASDDPVGVARR--FKPDILQAPASLLDQRLLADGSLQRIAGMGVEVHLRSIFLN-GLL 199 (292)
T ss_pred HHHHHHHHHHcCCcceEeeeccCHHHHHHHHhc--CCCCEEEecCCcccccccccchHHHHHhCCCEEEEechhhC-ccc
Confidence 689999999999999999999999999887654 4789999999999986 3599999999999999999999 998
Q ss_pred CCCccc---------cChHHHHHHHHHhCCCHHHHHHHHHHhCC--cEEEecCCCHHHHHHhhcccCcccCHHHHHHHhc
Q 037019 79 WGTNQV---------MNNEALKQIADAHGETVAQVCLRWIIEQG--AIVIAKSFNKERLKENLDIFDWALTDHDYDRINQ 147 (175)
Q Consensus 79 ~~~~~~---------~~~~~l~~~a~~~g~~~~q~al~~~l~~~--~~~i~G~~~~~~l~enl~a~~~~L~~~~~~~i~~ 147 (175)
.+.... .....+.+++++.+++++|+||+|+++++ +++|+|+++++|+++|+++.+.++++..++.|..
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~aqlalaw~l~~p~v~~~I~G~~~~~ql~~n~~a~~~~~~~~~~~~l~~ 279 (292)
T PRK14863 200 FLPPDRVPAQLKGASGRLSRVRRMIAEGRSDPLQAALGFALSRPEGSAVLVGVNSAAELSAVVAAASSPPPDLDWDDMAI 279 (292)
T ss_pred cCCcccCccchhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCeEEEecCCHHHHHHHHHHHhcCCCccchhhccC
Confidence 753210 11245667788889999999999999998 7889999999999999999998888887777665
Q ss_pred cC
Q 037019 148 IP 149 (175)
Q Consensus 148 ~~ 149 (175)
-.
T Consensus 280 ~~ 281 (292)
T PRK14863 280 DD 281 (292)
T ss_pred Ch
Confidence 44
No 16
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=99.91 E-value=1.2e-23 Score=168.00 Aligned_cols=157 Identities=20% Similarity=0.283 Sum_probs=130.7
Q ss_pred CHHHHHHHHHHcCCccEEEecCC-CHHHHHHHHHhCCCCceEeccccCccccc----HHHHHHHHhCCCeEEEecCCCCC
Q 037019 1 GLWEAMEVCQRLGLTKFIGVSNF-SSKKIEALLAFSTIPPSVNQVEMNPAWQQ----RQLREFCKSKSIIVNVFSPLGAV 75 (175)
Q Consensus 1 e~~~~l~~l~~~GkIr~iGvS~~-~~~~i~~~~~~~~~~~~~~q~~~~~~~~~----~~~~~~~~~~gi~vi~~~~l~~~ 75 (175)
++++.++++|++||||++|+|.| +++.+.++++.. +++++|++||.+++. .+.+++|.++|++|+.++|+.+
T Consensus 131 g~~df~~kak~eGkIr~~GFSfHgs~e~~~~iv~a~--~~dfvqlq~ny~d~~n~~~~~~l~~A~~~~~gI~IMeP~~g- 207 (391)
T COG1453 131 GVFDFLEKAKAEGKIRNAGFSFHGSTEVFKEIVDAY--PWDFVQLQYNYIDQKNQAGTEGLKYAASKGLGIFIMEPLDG- 207 (391)
T ss_pred ChHHHHHHHHhcCcEEEeeecCCCCHHHHHHHHhcC--CcceEEeeeeeeccchhcccHHHHHHHhCCCcEEEEeeCCC-
Confidence 46899999999999999999999 567778888877 489999999999986 3799999999999999999999
Q ss_pred CCCCCCccccChHHHHHHHHHhC--CCHHHHHHHHHHhCC--cEEEecCCCHHHHHHhhcccCc---ccCHHHHHHHhcc
Q 037019 76 GSCWGTNQVMNNEALKQIADAHG--ETVAQVCLRWIIEQG--AIVIAKSFNKERLKENLDIFDW---ALTDHDYDRINQI 148 (175)
Q Consensus 76 G~l~~~~~~~~~~~l~~~a~~~g--~~~~q~al~~~l~~~--~~~i~G~~~~~~l~enl~a~~~---~L~~~~~~~i~~~ 148 (175)
|-|... ..+++.+++++++ .||+.+|+||+++|+ .++++|+++++|++||++.++. +||++|...|.++
T Consensus 208 G~l~~~----vP~~~~~l~~~~~~~~sP~~wa~R~~~shp~V~~vlsGm~~~~~l~enLk~~~~~~p~lte~e~~il~~v 283 (391)
T COG1453 208 GGLLYN----VPEKLEELCRPASPKRSPAEWALRYLLSHPEVTTVLSGMNTPEQLEENLKIASELEPSLTEEELQILEKV 283 (391)
T ss_pred CCcccC----CCHHHHHHHHhcCCCCCcHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHHHhhcCCccCHHHHHHHHHH
Confidence 543221 2478899999886 589999999999999 8899999999999999998754 4999999988887
Q ss_pred CCCCC------CCCccccCCCC
Q 037019 149 PQHRM------MPRDEYITPHG 164 (175)
Q Consensus 149 ~~~~~------~~~~~~~~~~~ 164 (175)
.+..+ -.+.+|+-|||
T Consensus 284 ~~~~~~~~~v~Ct~C~yC~PCP 305 (391)
T COG1453 284 EEIYRESLKVPCTGCRYCLPCP 305 (391)
T ss_pred HHHHHHHhcCCCccccccCcCC
Confidence 65322 33555666653
No 17
>KOG1576 consensus Predicted oxidoreductase [Energy production and conversion]
Probab=99.81 E-value=3.8e-19 Score=137.09 Aligned_cols=138 Identities=15% Similarity=0.113 Sum_probs=114.5
Q ss_pred CHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHhCCCCceEec--cccCccccc-HHHHHHHHhCCCeEEEecCCCCCCC
Q 037019 1 GLWEAMEVCQRLGLTKFIGVSNFSSKKIEALLAFSTIPPSVNQ--VEMNPAWQQ-RQLREFCKSKSIIVNVFSPLGAVGS 77 (175)
Q Consensus 1 e~~~~l~~l~~~GkIr~iGvS~~~~~~i~~~~~~~~~~~~~~q--~~~~~~~~~-~~~~~~~~~~gi~vi~~~~l~~~G~ 77 (175)
|++.+|+++|++||||+||||+++.+.+.++++......+++- ++|++.+.. -..+++.++.|++|+.-++++. |+
T Consensus 158 Etlp~Le~lk~~Gk~RfiGitgypldvl~~~ae~~~G~~dvvlsY~ry~l~d~tLl~~~~~~~sk~vgVi~Asalsm-gL 236 (342)
T KOG1576|consen 158 ETLPALEELKQEGKIRFIGITGYPLDVLTECAERGKGRLDVVLSYCRYTLNDNTLLRYLKRLKSKGVGVINASALSM-GL 236 (342)
T ss_pred HHHHHHHHHHhcCceeEeeecccchHHHHHHHhcCCCceeeehhhhhhccccHHHHHHHHHHHhcCceEEehhhHHH-HH
Confidence 6789999999999999999999999999999987765566666 555544433 4577778899999999999999 99
Q ss_pred CCCCcccc---ChH-------HHHHHHHHhCCCHHHHHHHHHHhCC--cEEEecCCCHHHHHHhhcccCcccCH
Q 037019 78 CWGTNQVM---NNE-------ALKQIADAHGETVAQVCLRWIIEQG--AIVIAKSFNKERLKENLDIFDWALTD 139 (175)
Q Consensus 78 l~~~~~~~---~~~-------~l~~~a~~~g~~~~q~al~~~l~~~--~~~i~G~~~~~~l~enl~a~~~~L~~ 139 (175)
|+..++.. .++ ...++|++.|++...+|+.|+++.+ +++++|+++.++++.|+++-...|+.
T Consensus 237 Lt~~gp~~wHPaS~Elk~~a~~aa~~Cq~rnv~l~kLA~~Yam~~~~~~~~lvGm~s~~~l~~nLdan~~~ls~ 310 (342)
T KOG1576|consen 237 LTNQGPPPWHPASDELKEAAKAAAEYCQSRNVELGKLAMYYAMSLPGVSTVLVGMSSRQLLRINLDANFDRLSS 310 (342)
T ss_pred hhcCCCCCCCCCCHHHHHHHHHHHHHHHHcCccHHHHHHHHHHccCCcceEEecCchHHHHHHHHHhhhccccc
Confidence 98766533 233 4455677889999999999999988 99999999999999999986666765
No 18
>KOG3023 consensus Glutamate-cysteine ligase regulatory subunit [Amino acid transport and metabolism]
Probab=98.64 E-value=6.7e-08 Score=73.99 Aligned_cols=72 Identities=25% Similarity=0.408 Sum_probs=66.8
Q ss_pred CHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHhCCCCceEeccccCccccc-HHHHHHHHhCCCeEEEecCC
Q 037019 1 GLWEAMEVCQRLGLTKFIGVSNFSSKKIEALLAFSTIPPSVNQVEMNPAWQQ-RQLREFCKSKSIIVNVFSPL 72 (175)
Q Consensus 1 e~~~~l~~l~~~GkIr~iGvS~~~~~~i~~~~~~~~~~~~~~q~~~~~~~~~-~~~~~~~~~~gi~vi~~~~l 72 (175)
+.|+.||+++.+|||..||+|.|+..+++++++.+.++|..+|+.+.-++.= +++..+|.+|+|.+...+--
T Consensus 157 plwk~LE~lv~~~kI~~lGvSDfda~qLe~Li~saqVvP~snqVnL~~cCvvPpdLqafa~~hdiQLltHsDP 229 (285)
T KOG3023|consen 157 PLWKLLEELVGEGKIGTLGVSDFDANQLERLISSAQVVPESNQVNLGQCCVVPPDLQAFADRHDIQLLTHSDP 229 (285)
T ss_pred HHHHHHHHHhccCceeeeeecccCHHHHHHHHhhhccccccceeeccccccCCHHHHHHhhhcceeeeecCCc
Confidence 3699999999999999999999999999999999999999999999988774 89999999999999887644
No 19
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=95.72 E-value=0.22 Score=39.26 Aligned_cols=102 Identities=12% Similarity=0.042 Sum_probs=73.2
Q ss_pred HHHHHHcCCccEEEecCCCHHHHHHHHHhCCCCceEeccccCccccc--HHHHHHHHhCCCeEEEecCCCCCCCCCCCcc
Q 037019 6 MEVCQRLGLTKFIGVSNFSSKKIEALLAFSTIPPSVNQVEMNPAWQQ--RQLREFCKSKSIIVNVFSPLGAVGSCWGTNQ 83 (175)
Q Consensus 6 l~~l~~~GkIr~iGvS~~~~~~i~~~~~~~~~~~~~~q~~~~~~~~~--~~~~~~~~~~gi~vi~~~~l~~~G~l~~~~~ 83 (175)
|.+-.++|+...-.....+...+-+++...+.++.++-.+..+++.+ ..++..|+.+|+.++++.|-..
T Consensus 10 lk~~l~~g~~~~g~~~~~~sp~~~e~~a~~G~D~v~iD~EHg~~~~~~~~~~i~a~~~~g~~~lVRvp~~~--------- 80 (256)
T PRK10558 10 FKAALAAKQVQIGCWSALANPITTEVLGLAGFDWLVLDGEHAPNDVSTFIPQLMALKGSASAPVVRVPTNE--------- 80 (256)
T ss_pred HHHHHHcCCceEEEEEcCCCcHHHHHHHhcCCCEEEEccccCCCCHHHHHHHHHHHhhcCCCcEEECCCCC---------
Confidence 44444558753323344444455566667778899999999999887 6799999999999999988765
Q ss_pred ccChHHHHHHHHHhCCCHHHHHHHHHHhCC--cEEEecCCCHHHHHHhhcccCc
Q 037019 84 VMNNEALKQIADAHGETVAQVCLRWIIEQG--AIVIAKSFNKERLKENLDIFDW 135 (175)
Q Consensus 84 ~~~~~~l~~~a~~~g~~~~q~al~~~l~~~--~~~i~G~~~~~~l~enl~a~~~ 135 (175)
...++.+|..+ .+++|-..+.++.++.++++.+
T Consensus 81 -------------------~~~i~r~LD~Ga~giivP~v~tae~a~~~v~a~ky 115 (256)
T PRK10558 81 -------------------PVIIKRLLDIGFYNFLIPFVETAEEARRAVASTRY 115 (256)
T ss_pred -------------------HHHHHHHhCCCCCeeeecCcCCHHHHHHHHHHcCC
Confidence 23456666666 6777888888888887777665
No 20
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=95.17 E-value=0.51 Score=37.49 Aligned_cols=102 Identities=11% Similarity=0.024 Sum_probs=73.5
Q ss_pred HHHHHHcCCccEEEecCCCHHHHHHHHHhCCCCceEeccccCccccc--HHHHHHHHhCCCeEEEecCCCCCCCCCCCcc
Q 037019 6 MEVCQRLGLTKFIGVSNFSSKKIEALLAFSTIPPSVNQVEMNPAWQQ--RQLREFCKSKSIIVNVFSPLGAVGSCWGTNQ 83 (175)
Q Consensus 6 l~~l~~~GkIr~iGvS~~~~~~i~~~~~~~~~~~~~~q~~~~~~~~~--~~~~~~~~~~gi~vi~~~~l~~~G~l~~~~~ 83 (175)
|.+..++|+...-.........+.+++...+.++.++-.+.++++.+ ..++..++..|+.++++.|-..
T Consensus 9 lk~~L~~G~~~~G~~~~~~sp~~~E~~a~~GfD~v~iD~EHg~~~~~~l~~~i~a~~~~g~~~lVRvp~~~--------- 79 (267)
T PRK10128 9 FKEGLRKGEVQIGLWLSSTTSYMAEIAATSGYDWLLIDGEHAPNTIQDLYHQLQAIAPYASQPVIRPVEGS--------- 79 (267)
T ss_pred HHHHHHcCCceEEEEecCCCcHHHHHHHHcCCCEEEEccccCCCCHHHHHHHHHHHHhcCCCeEEECCCCC---------
Confidence 34444557764333344444455555566778899999999999887 5689999999999999888544
Q ss_pred ccChHHHHHHHHHhCCCHHHHHHHHHHhCC--cEEEecCCCHHHHHHhhcccCc
Q 037019 84 VMNNEALKQIADAHGETVAQVCLRWIIEQG--AIVIAKSFNKERLKENLDIFDW 135 (175)
Q Consensus 84 ~~~~~~l~~~a~~~g~~~~q~al~~~l~~~--~~~i~G~~~~~~l~enl~a~~~ 135 (175)
...++.+|..+ .+++|-..+.++.++.+++..+
T Consensus 80 -------------------~~~i~r~LD~GA~GIivP~V~saeeA~~~V~a~rY 114 (267)
T PRK10128 80 -------------------KPLIKQVLDIGAQTLLIPMVDTAEQARQVVSATRY 114 (267)
T ss_pred -------------------HHHHHHHhCCCCCeeEecCcCCHHHHHHHHHhcCC
Confidence 24556777777 6778888888888888888776
No 21
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=94.96 E-value=0.49 Score=37.19 Aligned_cols=99 Identities=12% Similarity=0.001 Sum_probs=69.1
Q ss_pred HHHcCCccEEEecCCCHHHHHHHHHhCCCCceEeccccCccccc--HHHHHHHHhCCCeEEEecCCCCCCCCCCCccccC
Q 037019 9 CQRLGLTKFIGVSNFSSKKIEALLAFSTIPPSVNQVEMNPAWQQ--RQLREFCKSKSIIVNVFSPLGAVGSCWGTNQVMN 86 (175)
Q Consensus 9 l~~~GkIr~iGvS~~~~~~i~~~~~~~~~~~~~~q~~~~~~~~~--~~~~~~~~~~gi~vi~~~~l~~~G~l~~~~~~~~ 86 (175)
-.++|+...-..++.....+-+++...+.++.++-.+..+++.+ ..++..++..|+.++.+.|-..
T Consensus 6 ~l~~g~~~~G~~~~~~sp~~~e~~a~~G~D~v~iD~EHg~~~~~~~~~~~~a~~~~g~~~~VRvp~~~------------ 73 (249)
T TIGR03239 6 DLLARETLIGCWSALGNPITTEVLGLAGFDWLLLDGEHAPNDVLTFIPQLMALKGSASAPVVRPPWNE------------ 73 (249)
T ss_pred HHHcCCceEEEEEcCCCcHHHHHHHhcCCCEEEEecccCCCCHHHHHHHHHHHhhcCCCcEEECCCCC------------
Confidence 33457653322344444455555566778999999999999887 6799999999999999887755
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHhCC--cEEEecCCCHHHHHHhhcccCc
Q 037019 87 NEALKQIADAHGETVAQVCLRWIIEQG--AIVIAKSFNKERLKENLDIFDW 135 (175)
Q Consensus 87 ~~~l~~~a~~~g~~~~q~al~~~l~~~--~~~i~G~~~~~~l~enl~a~~~ 135 (175)
...++.+|..+ .+++|-..+.++.++.++++.+
T Consensus 74 ----------------~~~i~r~LD~Ga~gIivP~v~taeea~~~v~a~ky 108 (249)
T TIGR03239 74 ----------------PVIIKRLLDIGFYNFLIPFVESAEEAERAVAATRY 108 (249)
T ss_pred ----------------HHHHHHHhcCCCCEEEecCcCCHHHHHHHHHHcCC
Confidence 23445566666 6677777777777777766655
No 22
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=93.35 E-value=1.8 Score=34.00 Aligned_cols=100 Identities=10% Similarity=0.038 Sum_probs=69.2
Q ss_pred HHHHHcCCccE-EEecCCCHHHHHHHHHhCCCCceEeccccCccccc--HHHHHHHHhCCCeEEEecCCCCCCCCCCCcc
Q 037019 7 EVCQRLGLTKF-IGVSNFSSKKIEALLAFSTIPPSVNQVEMNPAWQQ--RQLREFCKSKSIIVNVFSPLGAVGSCWGTNQ 83 (175)
Q Consensus 7 ~~l~~~GkIr~-iGvS~~~~~~i~~~~~~~~~~~~~~q~~~~~~~~~--~~~~~~~~~~gi~vi~~~~l~~~G~l~~~~~ 83 (175)
.+..++|+... +.++..++..++.+ ...+.++.++-++.++++.+ ..++..++.+|+.++.+.|-..
T Consensus 4 k~~l~~g~~~~g~~~~~~~p~~~e~~-~~~g~D~v~iDlEH~~~~~~~~~~~~~a~~~~g~~~~VRv~~~~--------- 73 (249)
T TIGR02311 4 KQALKEGQPQIGLWLGLADPYAAEIC-AGAGFDWLLIDGEHAPNDVRTILSQLQALAPYPSSPVVRPAIGD--------- 73 (249)
T ss_pred HHHHHCCCceEEEEEeCCCcHHHHHH-HhcCCCEEEEeccCCCCCHHHHHHHHHHHHhcCCCcEEECCCCC---------
Confidence 34445577532 33444455555554 45667889999999987665 4577888888888888876544
Q ss_pred ccChHHHHHHHHHhCCCHHHHHHHHHHhCC--cEEEecCCCHHHHHHhhcccCc
Q 037019 84 VMNNEALKQIADAHGETVAQVCLRWIIEQG--AIVIAKSFNKERLKENLDIFDW 135 (175)
Q Consensus 84 ~~~~~~l~~~a~~~g~~~~q~al~~~l~~~--~~~i~G~~~~~~l~enl~a~~~ 135 (175)
...++.+|..+ .+++|-..+++++++.++++.+
T Consensus 74 -------------------~~~i~~~Ld~Ga~gIivP~v~s~e~a~~~v~~~~y 108 (249)
T TIGR02311 74 -------------------PVLIKQLLDIGAQTLLVPMIETAEQAEAAVAATRY 108 (249)
T ss_pred -------------------HHHHHHHhCCCCCEEEecCcCCHHHHHHHHHHcCC
Confidence 12567777777 7788888888888888888764
No 23
>PRK12360 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=86.28 E-value=7.6 Score=31.14 Aligned_cols=106 Identities=12% Similarity=0.154 Sum_probs=71.2
Q ss_pred CCccEEEecCCCHHHHHHHHHhCCCCceEeccccCcccc-----cHHHHHHHHhCCCeEEEecCCCCCCCCCCCccccCh
Q 037019 13 GLTKFIGVSNFSSKKIEALLAFSTIPPSVNQVEMNPAWQ-----QRQLREFCKSKSIIVNVFSPLGAVGSCWGTNQVMNN 87 (175)
Q Consensus 13 GkIr~iGvS~~~~~~i~~~~~~~~~~~~~~q~~~~~~~~-----~~~~~~~~~~~gi~vi~~~~l~~~G~l~~~~~~~~~ 87 (175)
.++-.+-=++.+.+.+.++.+...-++.-+.+ +|-.+. +..+.+++++.++-++..+.-++ .-
T Consensus 157 ~kv~~vsQTT~~~~~~~~iv~~l~~~~~~~~v-~~TIC~aT~~RQ~a~~~La~~vD~miVVGg~~Ss-----------NT 224 (281)
T PRK12360 157 DKACVVAQTTIIPELWEDILNVIKLKSKELVF-FNTICSATKKRQESAKELSKEVDVMIVIGGKHSS-----------NT 224 (281)
T ss_pred cCEEEEECCCCcHHHHHHHHHHHHHhCccccc-CCCcchhhhhHHHHHHHHHHhCCEEEEecCCCCc-----------cH
Confidence 45555555668888877776544322222222 343332 35689999999988887544443 35
Q ss_pred HHHHHHHHHhCC------CHHHHHHHHHHhCC-cEEEecCCCHHHHHHhh
Q 037019 88 EALKQIADAHGE------TVAQVCLRWIIEQG-AIVIAKSFNKERLKENL 130 (175)
Q Consensus 88 ~~l~~~a~~~g~------~~~q~al~~~l~~~-~~~i~G~~~~~~l~enl 130 (175)
.+|.++|++.+. ++.++-..|..... .-+..|+|+|+.+-+.+
T Consensus 225 ~rL~eia~~~~~~t~~Ie~~~el~~~~~~~~~~VGitaGASTP~~li~eV 274 (281)
T PRK12360 225 QKLVKICEKNCPNTFHIETADELDLEMLKDYKIIGITAGASTPDWIIEEV 274 (281)
T ss_pred HHHHHHHHHHCCCEEEECChHHCCHHHhCCCCEEEEEccCCCCHHHHHHH
Confidence 789999998873 67788888998776 77889999999775543
No 24
>PRK01045 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed
Probab=84.99 E-value=9.8 Score=30.78 Aligned_cols=107 Identities=15% Similarity=0.179 Sum_probs=71.9
Q ss_pred CCccEEEecCCCHHHHHHHHHhCCCCceEecc-ccCcccc-----cHHHHHHHHhCCCeEEEecCCCCCCCCCCCccccC
Q 037019 13 GLTKFIGVSNFSSKKIEALLAFSTIPPSVNQV-EMNPAWQ-----QRQLREFCKSKSIIVNVFSPLGAVGSCWGTNQVMN 86 (175)
Q Consensus 13 GkIr~iGvS~~~~~~i~~~~~~~~~~~~~~q~-~~~~~~~-----~~~~~~~~~~~gi~vi~~~~l~~~G~l~~~~~~~~ 86 (175)
.++-.+-=++.+.+.+.++.+...-++.-+.+ .+|-.+. +..+.+++++.++-++..+.-++ .
T Consensus 156 ~~v~vvsQTT~~~~~~~~i~~~l~~~~~~~~v~~~nTIC~aT~~RQ~a~~~La~~vD~miVVGg~~Ss-----------N 224 (298)
T PRK01045 156 DKLALVTQTTLSVDDTAEIIAALKERFPEIQGPPKDDICYATQNRQEAVKELAPQADLVIVVGSKNSS-----------N 224 (298)
T ss_pred CcEEEEEcCCCcHHHHHHHHHHHHHhCcCcccCCCCCcchhhHHHHHHHHHHHhhCCEEEEECCCCCc-----------c
Confidence 55666666778888887776544322211111 2332222 35699999999988887544443 3
Q ss_pred hHHHHHHHHHhC------CCHHHHHHHHHHhCC-cEEEecCCCHHHHHHhh
Q 037019 87 NEALKQIADAHG------ETVAQVCLRWIIEQG-AIVIAKSFNKERLKENL 130 (175)
Q Consensus 87 ~~~l~~~a~~~g------~~~~q~al~~~l~~~-~~~i~G~~~~~~l~enl 130 (175)
-.+|.++|++.+ .+..++-..|..... .-+..|+|+|+.+-+.+
T Consensus 225 T~kL~~i~~~~~~~t~~Ie~~~el~~~~l~~~~~VGitaGASTP~~li~eV 275 (298)
T PRK01045 225 SNRLREVAEEAGAPAYLIDDASEIDPEWFKGVKTVGVTAGASAPEWLVQEV 275 (298)
T ss_pred HHHHHHHHHHHCCCEEEECChHHCcHHHhcCCCEEEEEecCCCCHHHHHHH
Confidence 478999999887 367888889997666 77889999998765443
No 25
>COG1140 NarY Nitrate reductase beta subunit [Energy production and conversion]
Probab=84.55 E-value=0.6 Score=38.78 Aligned_cols=53 Identities=11% Similarity=0.237 Sum_probs=34.6
Q ss_pred cCCccEEEecCCCHHHHHHHHHhCCCCceEeccccCcc-cc-cHHHHHHHHhCCCe
Q 037019 12 LGLTKFIGVSNFSSKKIEALLAFSTIPPSVNQVEMNPA-WQ-QRQLREFCKSKSII 65 (175)
Q Consensus 12 ~GkIr~iGvS~~~~~~i~~~~~~~~~~~~~~q~~~~~~-~~-~~~~~~~~~~~gi~ 65 (175)
-|+|||+||--|+.+++.++..... .-++.+.+..+| ++ ++.+++.+++.||+
T Consensus 263 VGriRYlGVlLYDaDrv~eaAs~~~-e~dly~~Q~~ifLDP~DP~Vi~~A~k~Gip 317 (513)
T COG1140 263 VGRIRYLGVLLYDADRVEEAASTEN-EKDLYERQLDVFLDPHDPAVIEQARKDGIP 317 (513)
T ss_pred hcceeeeeeeeecHHHHHHhhcCcc-HHHHHHHHHhhhcCCCCHHHHHHHHHcCCc
Confidence 3999999999999999998876543 223333343433 22 35566666666553
No 26
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=84.32 E-value=7 Score=29.54 Aligned_cols=71 Identities=15% Similarity=0.213 Sum_probs=60.3
Q ss_pred HHHHHHHHcCCccEEEecCCCHHHHHHHHHhCCCCceEeccccCccccc-------HHHHHHHHhCCCeEEEecCCCC
Q 037019 4 EAMEVCQRLGLTKFIGVSNFSSKKIEALLAFSTIPPSVNQVEMNPAWQQ-------RQLREFCKSKSIIVNVFSPLGA 74 (175)
Q Consensus 4 ~~l~~l~~~GkIr~iGvS~~~~~~i~~~~~~~~~~~~~~q~~~~~~~~~-------~~~~~~~~~~gi~vi~~~~l~~ 74 (175)
+.|+++.+=|+=-=+++.||.-+..+.-+-..+-.|..-.++|+-.+.. .+..++|++.|+.+.-..++.+
T Consensus 93 ~vL~EmlRVgr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WYdTPNih~~Ti~DFe~lc~~~~i~I~~~~~~~~ 170 (193)
T PF07021_consen 93 EVLEEMLRVGRRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWYDTPNIHLCTIKDFEDLCRELGIRIEERVFLDG 170 (193)
T ss_pred HHHHHHHHhcCeEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcccCCCCcccccHHHHHHHHHHCCCEEEEEEEEcC
Confidence 5678888889988899999999998877765666788888898866653 7899999999999999999987
No 27
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=82.80 E-value=31 Score=29.87 Aligned_cols=120 Identities=11% Similarity=0.150 Sum_probs=69.0
Q ss_pred HHHHHHHHHHcCCccEEEecC----CCHHHHHHHHH----hCCCCce-EeccccCcccccHHHHHHHHhCCCeEEEecCC
Q 037019 2 LWEAMEVCQRLGLTKFIGVSN----FSSKKIEALLA----FSTIPPS-VNQVEMNPAWQQRQLREFCKSKSIIVNVFSPL 72 (175)
Q Consensus 2 ~~~~l~~l~~~GkIr~iGvS~----~~~~~i~~~~~----~~~~~~~-~~q~~~~~~~~~~~~~~~~~~~gi~vi~~~~l 72 (175)
+++.++.++++..++.+-++. .+...+.++++ ....++. ..+...+....+.++++..++.|+.-+..+.=
T Consensus 227 Vv~Ei~~l~~~~gv~~~~~~Dd~f~~~~~~~~~l~~~l~~~~~l~i~w~~~~r~~~i~~d~ell~~l~~aG~~~v~iGiE 306 (497)
T TIGR02026 227 FVDEIEWLVRTHGVGFFILADEEPTINRKKFQEFCEEIIARNPISVTWGINTRVTDIVRDADILHLYRRAGLVHISLGTE 306 (497)
T ss_pred HHHHHHHHHHHcCCCEEEEEecccccCHHHHHHHHHHHHhcCCCCeEEEEecccccccCCHHHHHHHHHhCCcEEEEccc
Confidence 467788888766688887663 34455544433 2112221 13344444444678999999999876665444
Q ss_pred CCCCCCCCCccccChHHHHHHHHHhCCCHHHHHHHHHHhCC----cEEEec--CCCHHHHHHhhcc
Q 037019 73 GAVGSCWGTNQVMNNEALKQIADAHGETVAQVCLRWIIEQG----AIVIAK--SFNKERLKENLDI 132 (175)
Q Consensus 73 ~~~G~l~~~~~~~~~~~l~~~a~~~g~~~~q~al~~~l~~~----~~~i~G--~~~~~~l~enl~a 132 (175)
+. ..+.++.+-+.+......-+++.+.+++ ...|+| ..+.+++++.++-
T Consensus 307 S~-----------~~~~L~~~~K~~t~~~~~~ai~~l~~~Gi~~~~~~I~G~P~et~e~~~~t~~~ 361 (497)
T TIGR02026 307 AA-----------AQATLDHFRKGTTTSTNKEAIRLLRQHNILSEAQFITGFENETDETFEETYRQ 361 (497)
T ss_pred cC-----------CHHHHHHhcCCCCHHHHHHHHHHHHHCCCcEEEEEEEECCCCCHHHHHHHHHH
Confidence 33 2344444443333333445666777776 445666 3567777777654
No 28
>TIGR00216 ispH_lytB (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming). Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response.
Probab=81.83 E-value=13 Score=29.79 Aligned_cols=114 Identities=16% Similarity=0.215 Sum_probs=74.7
Q ss_pred HHHHHHHcCCccEEEecCCCHHHHHHHHHhCCCCc--eEeccccCccc-----ccHHHHHHHHhCCCeEEEecCCCCCCC
Q 037019 5 AMEVCQRLGLTKFIGVSNFSSKKIEALLAFSTIPP--SVNQVEMNPAW-----QQRQLREFCKSKSIIVNVFSPLGAVGS 77 (175)
Q Consensus 5 ~l~~l~~~GkIr~iGvS~~~~~~i~~~~~~~~~~~--~~~q~~~~~~~-----~~~~~~~~~~~~gi~vi~~~~l~~~G~ 77 (175)
-++.+....++-.+-=++.+.+.+.++.+...-++ .-.. .+|-.+ ++..+.+++.+-++-++..+.-++
T Consensus 146 d~~~l~~~~~v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~-~~nTIC~AT~~RQ~a~~~la~~vD~miVVGg~nSs--- 221 (280)
T TIGR00216 146 DLENFKVEDLLGVVSQTTLSQEDTKEIVAELKARVPQKEVP-VFNTICYATQNRQDAVKELAPEVDLMIVIGGKNSS--- 221 (280)
T ss_pred HHHhCCCCCcEEEEEcCCCcHHHHHHHHHHHHHhCCCcCCC-CCCCcccccHHHHHHHHHHHhhCCEEEEECCCCCc---
Confidence 34444444556666666788888777665433222 1111 123222 236699999998888887444433
Q ss_pred CCCCccccChHHHHHHHHHhC------CCHHHHHHHHHHhCC-cEEEecCCCHHHHHHhh
Q 037019 78 CWGTNQVMNNEALKQIADAHG------ETVAQVCLRWIIEQG-AIVIAKSFNKERLKENL 130 (175)
Q Consensus 78 l~~~~~~~~~~~l~~~a~~~g------~~~~q~al~~~l~~~-~~~i~G~~~~~~l~enl 130 (175)
.-.+|.++|++.| .+..++-..|.-... .-+..|+|+|+.+-+.+
T Consensus 222 --------NT~rL~ei~~~~~~~t~~Ie~~~el~~~~l~~~~~VGiTAGASTP~~li~eV 273 (280)
T TIGR00216 222 --------NTTRLYEIAEEHGPPSYLIETAEELPEEWLKGVKVVGITAGASTPDWIIEEV 273 (280)
T ss_pred --------hHHHHHHHHHHhCCCEEEECChHHCCHHHhCCCCEEEEEecCCCCHHHHHHH
Confidence 4578999999987 367888888988766 77889999999775543
No 29
>PF02401 LYTB: LytB protein; InterPro: IPR003451 Terpenes are among the largest groups of natural products and include compounds such as vitamins, cholesterol and carotenoids. The biosynthesis of all terpenoids begins with one or both of the two C5 precursors of the pathway: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). In animals, fungi, and certain bacteria, the synthesis of IPP and DMAPP occurs via the well-known mevalonate pathway, however, a second, nonmevalonate terpenoid pathway has been identified in many eubacteria, algae and the chloroplasts of higher plants []. LytB(IspH) catalyses the conversion of 1-hydroy-2-methyl-2-(E)-butenyl 4-diphosphate into IPP and DMAPP in this second pathway The enzyme appears to be responsible for a branch-step in the nonmevalonate pathway, in that IPP and DMAPP are produced in parallel from a single precursor although the exact mechanism of this is not currently fully understood []. Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response [].; GO: 0019288 isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, 0055114 oxidation-reduction process; PDB: 3DNF_B 3SZL_B 3KE8_B 3KEF_B 3SZU_A 3KEL_A 3F7T_B 3KE9_B 3KEM_B 3T0G_A ....
Probab=80.04 E-value=11 Score=30.28 Aligned_cols=107 Identities=18% Similarity=0.226 Sum_probs=66.8
Q ss_pred CCccEEEecCCCHHHHHHHHHhCCC-CceEeccccCcccc-----cHHHHHHHHhCCCeEEEecCCCCCCCCCCCccccC
Q 037019 13 GLTKFIGVSNFSSKKIEALLAFSTI-PPSVNQVEMNPAWQ-----QRQLREFCKSKSIIVNVFSPLGAVGSCWGTNQVMN 86 (175)
Q Consensus 13 GkIr~iGvS~~~~~~i~~~~~~~~~-~~~~~q~~~~~~~~-----~~~~~~~~~~~gi~vi~~~~l~~~G~l~~~~~~~~ 86 (175)
.++-.+.=++++.+.+.++.+...- .+...-..+|-.+. +..+.+++++-++-++..+.-++ .
T Consensus 155 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~nTIC~aT~~RQ~a~~~La~~vD~miVIGg~~Ss-----------N 223 (281)
T PF02401_consen 155 KKVAVVSQTTQSVEKFEEIVEALKKRFPELEGPVFNTICYATQNRQEAARELAKEVDAMIVIGGKNSS-----------N 223 (281)
T ss_dssp TCEEEEE-TTS-HHHHHHHHHHHHHHSTCEE-SCC-S--CHHHHHHHHHHHHHCCSSEEEEES-TT-H-----------H
T ss_pred CeEEEEEeecccHHHHHHHHHHHHHhCccccCCCCCCCCHhHHHHHHHHHHHHhhCCEEEEecCCCCc-----------c
Confidence 4777888888998888777654321 12222233443333 35688999998877777444433 3
Q ss_pred hHHHHHHHHHhCC------CHHHHHHHHHHhCC-cEEEecCCCHHHHHHhh
Q 037019 87 NEALKQIADAHGE------TVAQVCLRWIIEQG-AIVIAKSFNKERLKENL 130 (175)
Q Consensus 87 ~~~l~~~a~~~g~------~~~q~al~~~l~~~-~~~i~G~~~~~~l~enl 130 (175)
-.+|.++|++++. ++.++-..|.-... .-+..|+|+|+.+-+.+
T Consensus 224 T~kL~eia~~~~~~t~~Ie~~~el~~~~l~~~~~VGItaGASTP~~ii~eV 274 (281)
T PF02401_consen 224 TRKLAEIAKEHGKPTYHIETADELDPEWLKGVKKVGITAGASTPDWIIEEV 274 (281)
T ss_dssp HHHHHHHHHHCTTCEEEESSGGG--HHHHTT-SEEEEEE-TTS-HHHHHHH
T ss_pred HHHHHHHHHHhCCCEEEeCCccccCHhHhCCCCEEEEEccCCCCHHHHHHH
Confidence 5789999999873 67888889988887 88889999999876654
No 30
>COG0761 lytB 4-Hydroxy-3-methylbut-2-enyl diphosphate reductase IspH [Lipid metabolism]
Probab=77.98 E-value=19 Score=29.00 Aligned_cols=108 Identities=17% Similarity=0.170 Sum_probs=73.2
Q ss_pred CccEEEecCCCHHHHHHHHHhCCCCceEeccccC--cc----cccHHHHHHHHhCCCeEEEecCCCCCCCCCCCccccCh
Q 037019 14 LTKFIGVSNFSSKKIEALLAFSTIPPSVNQVEMN--PA----WQQRQLREFCKSKSIIVNVFSPLGAVGSCWGTNQVMNN 87 (175)
Q Consensus 14 kIr~iGvS~~~~~~i~~~~~~~~~~~~~~q~~~~--~~----~~~~~~~~~~~~~gi~vi~~~~l~~~G~l~~~~~~~~~ 87 (175)
++-++-=++-+.+...++.+...-.+..+|.+.+ +| .++..+.+.+.+-++-++..++-++ ..
T Consensus 159 ~l~~~tQTTls~ddt~~Iv~~l~~r~p~~~~~~~~~ICyAT~nRQ~Avk~la~~~Dl~iVVG~~nSS-----------Ns 227 (294)
T COG0761 159 KLAFVTQTTLSVDDTAEIVAALKERFPKIEVPPFNDICYATQNRQDAVKELAPEVDLVIVVGSKNSS-----------NS 227 (294)
T ss_pred cEEEEeeeecCHHHHHHHHHHHHHhCccccCCcccccchhhhhHHHHHHHHhhcCCEEEEECCCCCc-----------cH
Confidence 4444444446666666655444333333344322 22 2335688999999998888777665 56
Q ss_pred HHHHHHHHHhCC------CHHHHHHHHHHhCC-cEEEecCCCHHHHHHhhcc
Q 037019 88 EALKQIADAHGE------TVAQVCLRWIIEQG-AIVIAKSFNKERLKENLDI 132 (175)
Q Consensus 88 ~~l~~~a~~~g~------~~~q~al~~~l~~~-~~~i~G~~~~~~l~enl~a 132 (175)
.+|.++|++.|. ++.++=..|..... .-+-.|+|.|+-|-+++-.
T Consensus 228 ~rL~eiA~~~g~~aylId~~~ei~~~w~~~~~~VGvTAGAStPd~lV~~Vi~ 279 (294)
T COG0761 228 NRLAEIAKRHGKPAYLIDDAEEIDPEWLKGVKTVGVTAGASTPDWLVQEVIA 279 (294)
T ss_pred HHHHHHHHHhCCCeEEeCChHhCCHHHhcCccEEEEecCCCCCHHHHHHHHH
Confidence 889999999985 56788888888866 7778899999988776543
No 31
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=77.88 E-value=5.5 Score=31.81 Aligned_cols=50 Identities=18% Similarity=0.244 Sum_probs=43.1
Q ss_pred CCHHHHHHHHHhCCCCceEeccccCcccccHHHHHHHHhCCCeEEEecCCCC
Q 037019 23 FSSKKIEALLAFSTIPPSVNQVEMNPAWQQRQLREFCKSKSIIVNVFSPLGA 74 (175)
Q Consensus 23 ~~~~~i~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~gi~vi~~~~l~~ 74 (175)
|+..++.++.+..+++..++-+.||+.+. ++.++|.+.|+.++..-|+..
T Consensus 201 hD~kr~~el~~~f~ip~~iViNr~~~g~s--~ie~~~~e~gi~il~~IPyd~ 250 (284)
T COG1149 201 HDLKRALELVEHFGIPTGIVINRYNLGDS--EIEEYCEEEGIPILGEIPYDK 250 (284)
T ss_pred hHHHHHHHHHHHhCCceEEEEecCCCCch--HHHHHHHHcCCCeeEECCcch
Confidence 56667778888889999999999976655 999999999999999999876
No 32
>PRK07094 biotin synthase; Provisional
Probab=77.49 E-value=30 Score=27.84 Aligned_cols=119 Identities=13% Similarity=0.131 Sum_probs=63.6
Q ss_pred HHHHHHHHHHcCCccEEEecC-----CCHHHHHHHHHhCCCCceEeccccCcccccHHHHHHHHhCCCeEEEecCCCCCC
Q 037019 2 LWEAMEVCQRLGLTKFIGVSN-----FSSKKIEALLAFSTIPPSVNQVEMNPAWQQRQLREFCKSKSIIVNVFSPLGAVG 76 (175)
Q Consensus 2 ~~~~l~~l~~~GkIr~iGvS~-----~~~~~i~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~gi~vi~~~~l~~~G 76 (175)
+.+..+.+++.| ++.+.+++ ++.+.+.++++...-.+. +.+.++......+.++..++.|+..+..+.=+.
T Consensus 75 i~~~~~~~~~~g-~~~i~l~gG~~~~~~~~~l~~l~~~i~~~~~-l~i~~~~g~~~~e~l~~Lk~aG~~~v~~glEs~-- 150 (323)
T PRK07094 75 ILECAKKAYELG-YRTIVLQSGEDPYYTDEKIADIIKEIKKELD-VAITLSLGERSYEEYKAWKEAGADRYLLRHETA-- 150 (323)
T ss_pred HHHHHHHHHHCC-CCEEEEecCCCCCCCHHHHHHHHHHHHccCC-ceEEEecCCCCHHHHHHHHHcCCCEEEeccccC--
Confidence 445556666665 67776652 345666666543321111 122344444557788888998887766333222
Q ss_pred CCCCCccccChHHHHHHHHHhCCCHHHHHHHHHHhCC----cEEEec--CCCHHHHHHhhccc
Q 037019 77 SCWGTNQVMNNEALKQIADAHGETVAQVCLRWIIEQG----AIVIAK--SFNKERLKENLDIF 133 (175)
Q Consensus 77 ~l~~~~~~~~~~~l~~~a~~~g~~~~q~al~~~l~~~----~~~i~G--~~~~~~l~enl~a~ 133 (175)
..+.+..+.+.+...-.--+++++...+ ...++| .-+.+++.+.+..+
T Consensus 151 ---------~~~~~~~i~~~~s~~~~~~~i~~l~~~Gi~v~~~~iiGlpget~ed~~~~l~~l 204 (323)
T PRK07094 151 ---------DKELYAKLHPGMSFENRIACLKDLKELGYEVGSGFMVGLPGQTLEDLADDILFL 204 (323)
T ss_pred ---------CHHHHHHhCCCCCHHHHHHHHHHHHHcCCeecceEEEECCCCCHHHHHHHHHHH
Confidence 1233334433222222223566666665 556777 45777777766554
No 33
>PRK00087 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein; Reviewed
Probab=75.19 E-value=19 Score=32.29 Aligned_cols=106 Identities=14% Similarity=0.118 Sum_probs=70.5
Q ss_pred cCCccEEEecCCCHHHHHHHHHhCCCCceEeccccCccc-----ccHHHHHHHHhCCCeEEEecCCCCCCCCCCCccccC
Q 037019 12 LGLTKFIGVSNFSSKKIEALLAFSTIPPSVNQVEMNPAW-----QQRQLREFCKSKSIIVNVFSPLGAVGSCWGTNQVMN 86 (175)
Q Consensus 12 ~GkIr~iGvS~~~~~~i~~~~~~~~~~~~~~q~~~~~~~-----~~~~~~~~~~~~gi~vi~~~~l~~~G~l~~~~~~~~ 86 (175)
..++-.+-=++.+.+.+..+.+...-++.-+.+ +|-.+ ++..+.+++.+.++-++..+.-++ .
T Consensus 153 ~~~~~~~~QTT~~~~~~~~~~~~l~~~~~~~~~-~~tiC~at~~Rq~a~~~la~~~d~~~vvGg~~Ss-----------N 220 (647)
T PRK00087 153 DKKICVVSQTTEKQENFEKVLKELKKKGKEVKV-FNTICNATEVRQEAAEKLAKKVDVMIVVGGKNSS-----------N 220 (647)
T ss_pred CCCEEEEEcCCCcHHHHHHHHHHHHHhCCCccc-CCCcchhhhhHHHHHHHHHhhCCEEEEECCCCCc-----------c
Confidence 345566666677888777666543322211222 33332 235699999999988888555443 4
Q ss_pred hHHHHHHHHHhC------CCHHHHHHHHHHhCC-cEEEecCCCHHHHHHh
Q 037019 87 NEALKQIADAHG------ETVAQVCLRWIIEQG-AIVIAKSFNKERLKEN 129 (175)
Q Consensus 87 ~~~l~~~a~~~g------~~~~q~al~~~l~~~-~~~i~G~~~~~~l~en 129 (175)
-.+|.++|++.| .++.++--.|..... .-+..|+|+|+.+-+.
T Consensus 221 t~~L~~i~~~~~~~~~~ie~~~el~~~~~~~~~~vgitagaStP~~~i~~ 270 (647)
T PRK00087 221 TTKLYEICKSNCTNTIHIENAGELPEEWFKGVKIIGVTAGASTPDWIIEE 270 (647)
T ss_pred HHHHHHHHHHHCCCEEEECChHHCCHHHhCCCCEEEEEeccCCCHHHHHH
Confidence 578999999887 367888888987766 7788999999866443
No 34
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=69.28 E-value=27 Score=26.63 Aligned_cols=60 Identities=10% Similarity=0.190 Sum_probs=41.4
Q ss_pred HHHHHHHHHHcCCccEEEecC-CCHHHHHHHHHhCCCCceEeccccCcccccHHHHHHHHhCCCeEEE
Q 037019 2 LWEAMEVCQRLGLTKFIGVSN-FSSKKIEALLAFSTIPPSVNQVEMNPAWQQRQLREFCKSKSIIVNV 68 (175)
Q Consensus 2 ~~~~l~~l~~~GkIr~iGvS~-~~~~~i~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~gi~vi~ 68 (175)
+++.+++++++..=-.+|..+ .++++++.+.+.. -+|. .++. .+++++++|+++||.+++
T Consensus 46 a~~~i~~l~~~~~~~~vGAGTVl~~~~a~~a~~aG-A~Fi-----vsP~-~~~~v~~~~~~~~i~~iP 106 (204)
T TIGR01182 46 ALDAIRLLRKEVPDALIGAGTVLNPEQLRQAVDAG-AQFI-----VSPG-LTPELAKHAQDHGIPIIP 106 (204)
T ss_pred HHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcC-CCEE-----ECCC-CCHHHHHHHHHcCCcEEC
Confidence 466777777764446688877 5788888887643 2333 2332 257999999999998887
No 35
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=67.51 E-value=29 Score=26.39 Aligned_cols=60 Identities=12% Similarity=0.122 Sum_probs=39.9
Q ss_pred HHHHHHHHHHcCCccEEEecC-CCHHHHHHHHHhCCCCceEeccccCcccccHHHHHHHHhCCCeEEE
Q 037019 2 LWEAMEVCQRLGLTKFIGVSN-FSSKKIEALLAFSTIPPSVNQVEMNPAWQQRQLREFCKSKSIIVNV 68 (175)
Q Consensus 2 ~~~~l~~l~~~GkIr~iGvS~-~~~~~i~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~gi~vi~ 68 (175)
.++.+++++++..=-.||..+ .++++++++.+..- +|.+ ++ ..+++++++|+++||.++.
T Consensus 42 a~~~I~~l~~~~~~~~vGAGTVl~~e~a~~ai~aGA-~Fiv-----SP-~~~~~vi~~a~~~~i~~iP 102 (201)
T PRK06015 42 ALDAIRAVAAEVEEAIVGAGTILNAKQFEDAAKAGS-RFIV-----SP-GTTQELLAAANDSDVPLLP 102 (201)
T ss_pred HHHHHHHHHHHCCCCEEeeEeCcCHHHHHHHHHcCC-CEEE-----CC-CCCHHHHHHHHHcCCCEeC
Confidence 456677777664435678777 57777777776432 2222 22 2458899999999998887
No 36
>TIGR00289 conserved hypothetical protein TIGR00289. Homologous proteins related to MJ0570 of Methanococcus jannaschii include both the apparent orthologs found by this model above the trusted cutoff, the much longer protein YLR143W from Saccharomyces cerevisiae, and second homologous proteins from Archaeoglobus fulgidus and Pyrococcus horikoshii that appear to represent a second orthologous group.
Probab=67.21 E-value=56 Score=25.22 Aligned_cols=113 Identities=8% Similarity=0.097 Sum_probs=68.6
Q ss_pred CHHHHHHHHHhCCCCceEeccccCcccccHHHHHHHHhCCCeEEEecCCCCCCCCCCCccccChHHHHHHHHHhC-----
Q 037019 24 SSKKIEALLAFSTIPPSVNQVEMNPAWQQRQLREFCKSKSIIVNVFSPLGAVGSCWGTNQVMNNEALKQIADAHG----- 98 (175)
Q Consensus 24 ~~~~i~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~gi~vi~~~~l~~~G~l~~~~~~~~~~~l~~~a~~~g----- 98 (175)
+...+....+..++++..++.....-..-.++++..++.||.-++.+.+.. . -...++..+|++.|
T Consensus 46 ~~~~~~~qA~algiPl~~~~~~~~~e~~~~~l~~~l~~~gv~~vv~GdI~s-------~--~qr~~~e~vc~~~gl~~~~ 116 (222)
T TIGR00289 46 NLHLTDLVAEAVGIPLIKLYTSGEEEKEVEDLAGQLGELDVEALCIGAIES-------N--YQKSRIDKVCRELGLKSIA 116 (222)
T ss_pred CHHHHHHHHHHcCCCeEEEEcCCchhHHHHHHHHHHHHcCCCEEEECcccc-------H--HHHHHHHHHHHHcCCEEec
Confidence 445566666777776655554332101115677888888988888877765 1 13567778888876
Q ss_pred ----CCHHHHHHHHHHhCC-cEEEecCCCHHHHHHhhcccCcccCHHHHHHHhccCC
Q 037019 99 ----ETVAQVCLRWIIEQG-AIVIAKSFNKERLKENLDIFDWALTDHDYDRINQIPQ 150 (175)
Q Consensus 99 ----~~~~q~al~~~l~~~-~~~i~G~~~~~~l~enl~a~~~~L~~~~~~~i~~~~~ 150 (175)
.+..++ +.++ ..+ ..+|+.+.+. .|.+. .++-.++++.++.|.++.+
T Consensus 117 PLW~~d~~~l-~e~i-~~Gf~aiIv~v~~~-gL~~~--~LGr~id~~~~~~L~~l~~ 168 (222)
T TIGR00289 117 PLWHADPEKL-MYEV-AEKFEVIIVSVSAM-GLDES--WLGRRIDKECIDDLKRLNE 168 (222)
T ss_pred cccCCCHHHH-HHHH-HcCCeEEEEEEccC-CCChH--HcCCccCHHHHHHHHHHHh
Confidence 455555 4654 677 5555555433 33322 3455888888888877544
No 37
>KOG3085 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=64.13 E-value=16 Score=28.59 Aligned_cols=58 Identities=12% Similarity=0.161 Sum_probs=40.8
Q ss_pred HHHHHHHHHcCCccEEEecCCCHHHHHHHHHhCC----CCceEeccccCcccccHHHHHHHHhC
Q 037019 3 WEAMEVCQRLGLTKFIGVSNFSSKKIEALLAFST----IPPSVNQVEMNPAWQQRQLREFCKSK 62 (175)
Q Consensus 3 ~~~l~~l~~~GkIr~iGvS~~~~~~i~~~~~~~~----~~~~~~q~~~~~~~~~~~~~~~~~~~ 62 (175)
.+.+++++++| ..+|+-++..++++.++...+ .++.+..++-..-.+++.++.+|-++
T Consensus 119 ~~~lq~lR~~g--~~l~iisN~d~r~~~~l~~~~l~~~fD~vv~S~e~g~~KPDp~If~~al~~ 180 (237)
T KOG3085|consen 119 QELLQKLRKKG--TILGIISNFDDRLRLLLLPLGLSAYFDFVVESCEVGLEKPDPRIFQLALER 180 (237)
T ss_pred HHHHHHHHhCC--eEEEEecCCcHHHHHHhhccCHHHhhhhhhhhhhhccCCCChHHHHHHHHH
Confidence 47899999999 566755544566666655444 45666777777777888888888765
No 38
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=63.49 E-value=27 Score=26.41 Aligned_cols=60 Identities=18% Similarity=0.197 Sum_probs=36.3
Q ss_pred HHHHHHHHHHcCCccEEEecC-CCHHHHHHHHHhCCCCceEeccccCcccccHHHHHHHHhCCCeEEE
Q 037019 2 LWEAMEVCQRLGLTKFIGVSN-FSSKKIEALLAFSTIPPSVNQVEMNPAWQQRQLREFCKSKSIIVNV 68 (175)
Q Consensus 2 ~~~~l~~l~~~GkIr~iGvS~-~~~~~i~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~gi~vi~ 68 (175)
++++++.++++-.=-.+|..+ .+.++++++++..- .|.+ ++ ..+++++++|+++|+.++.
T Consensus 46 a~~~I~~l~~~~p~~~vGAGTV~~~e~a~~a~~aGA-~Fiv-----SP-~~~~~v~~~~~~~~i~~iP 106 (196)
T PF01081_consen 46 ALEAIEALRKEFPDLLVGAGTVLTAEQAEAAIAAGA-QFIV-----SP-GFDPEVIEYAREYGIPYIP 106 (196)
T ss_dssp HHHHHHHHHHHHTTSEEEEES--SHHHHHHHHHHT--SEEE-----ES-S--HHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHHHCCCCeeEEEeccCHHHHHHHHHcCC-CEEE-----CC-CCCHHHHHHHHHcCCcccC
Confidence 355566565543335577777 57777777766432 2222 22 2357899999999999988
No 39
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=63.06 E-value=78 Score=25.71 Aligned_cols=70 Identities=16% Similarity=0.001 Sum_probs=42.2
Q ss_pred HHHHHHHHHcCCccEEEecC---------CCHHHHHHHHHhCCCCceEeccccCccc---c-cHHHHHHHHhCCCeEEEe
Q 037019 3 WEAMEVCQRLGLTKFIGVSN---------FSSKKIEALLAFSTIPPSVNQVEMNPAW---Q-QRQLREFCKSKSIIVNVF 69 (175)
Q Consensus 3 ~~~l~~l~~~GkIr~iGvS~---------~~~~~i~~~~~~~~~~~~~~q~~~~~~~---~-~~~~~~~~~~~gi~vi~~ 69 (175)
.+.++.+++-|.|+.+.+.+ .+.+.+..+.+. +. ...+.++.+-.. . ....++.+++.||.+...
T Consensus 156 ~~ll~~l~~i~~v~~iri~Tr~~v~~p~rit~ell~~L~~~-g~-~v~i~l~~~h~~el~~~~~~ai~~L~~~Gi~v~~q 233 (321)
T TIGR03822 156 GDIMARLAAIDHVKIVRFHTRVPVADPARVTPALIAALKTS-GK-TVYVALHANHARELTAEARAACARLIDAGIPMVSQ 233 (321)
T ss_pred HHHHHHHHhCCCccEEEEeCCCcccChhhcCHHHHHHHHHc-CC-cEEEEecCCChhhcCHHHHHHHHHHHHcCCEEEEE
Confidence 45677788888777555543 344445544443 32 234444443211 1 145778888899999888
Q ss_pred cCCCC
Q 037019 70 SPLGA 74 (175)
Q Consensus 70 ~~l~~ 74 (175)
+++..
T Consensus 234 ~vLl~ 238 (321)
T TIGR03822 234 SVLLR 238 (321)
T ss_pred eeEeC
Confidence 88877
No 40
>cd00308 enolase_like Enolase-superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. Enolase superfamily contains different enzymes, like enolases, glutarate-, fucanate- and galactonate dehydratases, o-succinylbenzoate synthase, N-acylamino acid racemase, L-alanine-DL-glutamate epimerase, mandelate racemase, muconate lactonizing enzyme and 3-methylaspartase.
Probab=60.81 E-value=54 Score=24.93 Aligned_cols=70 Identities=14% Similarity=0.067 Sum_probs=48.5
Q ss_pred HHHHHHHHHcCCcc-EEEecCCCHHHHHHHHHhCCCCceEeccccCcccc---cHHHHHHHHhCCCeEEEecCCCC
Q 037019 3 WEAMEVCQRLGLTK-FIGVSNFSSKKIEALLAFSTIPPSVNQVEMNPAWQ---QRQLREFCKSKSIIVNVFSPLGA 74 (175)
Q Consensus 3 ~~~l~~l~~~GkIr-~iGvS~~~~~~i~~~~~~~~~~~~~~q~~~~~~~~---~~~~~~~~~~~gi~vi~~~~l~~ 74 (175)
++.+.++++...+. ..+=|-++...+..+++.. ..+++|+..+.+-. ...+..+|+++|+.++.......
T Consensus 134 ~~~~~~L~~~~~~pIa~dEs~~~~~~~~~~~~~~--~~d~~~~k~~~~GGi~~~~~i~~~a~~~gi~~~~~~~~~s 207 (229)
T cd00308 134 LEGYAALRRRTGIPIAADESVTTVDDALEALELG--AVDILQIKPTRVGGLTESRRAADLAEAFGIRVMVHGTLES 207 (229)
T ss_pred HHHHHHHHhhCCCCEEeCCCCCCHHHHHHHHHcC--CCCEEecCccccCCHHHHHHHHHHHHHcCCEEeecCCCCC
Confidence 56778888887666 3344556777777666544 35777776665432 26788999999999998766543
No 41
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=60.60 E-value=16 Score=26.80 Aligned_cols=63 Identities=17% Similarity=0.244 Sum_probs=38.5
Q ss_pred CHHHHHHHHHHcC-CccEEEecCC--CHHHHHHHHHhCCCCceEeccccCcccccHHHHHHHHhCCCeEEE
Q 037019 1 GLWEAMEVCQRLG-LTKFIGVSNF--SSKKIEALLAFSTIPPSVNQVEMNPAWQQRQLREFCKSKSIIVNV 68 (175)
Q Consensus 1 e~~~~l~~l~~~G-kIr~iGvS~~--~~~~i~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~gi~vi~ 68 (175)
|++++|.++++.| +|-.+|..+. ....+..++. ..+.+..|+--+.-...+..+++.|+.++.
T Consensus 65 Dil~al~~a~~~~~~Iavv~~~~~~~~~~~~~~ll~-----~~i~~~~~~~~~e~~~~i~~~~~~G~~viV 130 (176)
T PF06506_consen 65 DILRALAKAKKYGPKIAVVGYPNIIPGLESIEELLG-----VDIKIYPYDSEEEIEAAIKQAKAEGVDVIV 130 (176)
T ss_dssp HHHHHHHHCCCCTSEEEEEEESS-SCCHHHHHHHHT------EEEEEEESSHHHHHHHHHHHHHTT--EEE
T ss_pred HHHHHHHHHHhcCCcEEEEecccccHHHHHHHHHhC-----CceEEEEECCHHHHHHHHHHHHHcCCcEEE
Confidence 3566777777654 6777777774 3556666652 355666664322226788888899999988
No 42
>PF07287 DUF1446: Protein of unknown function (DUF1446); InterPro: IPR010839 This family consists of several bacterial and plant proteins of around 400 residues in length. The function of this family is unknown.
Probab=60.04 E-value=49 Score=27.58 Aligned_cols=87 Identities=17% Similarity=0.125 Sum_probs=49.3
Q ss_pred HHHHHHHHHcCCccEEEecCCCHHHHHHHHHhCCCCceEeccccCcccc-c-HHHHHHHHhCCCeEEEecCCCCCCCCCC
Q 037019 3 WEAMEVCQRLGLTKFIGVSNFSSKKIEALLAFSTIPPSVNQVEMNPAWQ-Q-RQLREFCKSKSIIVNVFSPLGAVGSCWG 80 (175)
Q Consensus 3 ~~~l~~l~~~GkIr~iGvS~~~~~~i~~~~~~~~~~~~~~q~~~~~~~~-~-~~~~~~~~~~gi~vi~~~~l~~~G~l~~ 80 (175)
..++.++.+.|.+.+|=.-.-+.-.+..........+. --|..... + ..+++.|+++||.+|..+.=.
T Consensus 12 ~~a~~~l~~~g~~d~l~~d~LaE~tma~~~~~~~~~p~---~gY~~~~~~~L~~~L~~~~~~gIkvI~NaGg~------- 81 (362)
T PF07287_consen 12 PDAAVRLARGGDVDYLVGDYLAERTMAILARAKRKDPT---KGYAPDFVRDLRPLLPAAAEKGIKVITNAGGL------- 81 (362)
T ss_pred HHHHHHHHhcCCCCEEEEecHHHHHHHHHHHHHhhCCC---CCchHHHHHHHHHHHHHHHhCCCCEEEeCCCC-------
Confidence 56777888888888886544433222222211111111 11322222 2 679999999999999974222
Q ss_pred CccccChHHHHHHHHHhCCC
Q 037019 81 TNQVMNNEALKQIADAHGET 100 (175)
Q Consensus 81 ~~~~~~~~~l~~~a~~~g~~ 100 (175)
.+.-..+.+++++++.|.+
T Consensus 82 -np~~~a~~v~eia~e~Gl~ 100 (362)
T PF07287_consen 82 -NPAGCADIVREIARELGLS 100 (362)
T ss_pred -CHHHHHHHHHHHHHhcCCC
Confidence 2222456777777777754
No 43
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=59.82 E-value=18 Score=29.74 Aligned_cols=66 Identities=20% Similarity=0.366 Sum_probs=42.8
Q ss_pred HHHHHHHHhCCCeEEEecCCCCCCCCCCCccccChHHHHHHHHHhCCCH---------HHHHHHHHHhCC--cEEEecCC
Q 037019 53 RQLREFCKSKSIIVNVFSPLGAVGSCWGTNQVMNNEALKQIADAHGETV---------AQVCLRWIIEQG--AIVIAKSF 121 (175)
Q Consensus 53 ~~~~~~~~~~gi~vi~~~~l~~~G~l~~~~~~~~~~~l~~~a~~~g~~~---------~q~al~~~l~~~--~~~i~G~~ 121 (175)
..+.++|++.||.++. +|+.. . -.++...++++. .--.|.|+.+.+ ...-.|+.
T Consensus 93 ~~Lke~a~~~Gi~~~S-SPfd~-~-------------svd~l~~~~~~ayKIaS~E~~~~plik~iA~~~kPiIlSTGma 157 (347)
T COG2089 93 AQLKEYARKRGIIFFS-SPFDL-T-------------AVDLLESLNPPAYKIASGEINDLPLIKYIAKKGKPIILSTGMA 157 (347)
T ss_pred HHHHHHHHHcCeEEEe-cCCCH-H-------------HHHHHHhcCCCeEEecCccccChHHHHHHHhcCCCEEEEcccc
Confidence 5799999999998877 67754 1 112222222111 123567777765 66677888
Q ss_pred CHHHHHHhhccc
Q 037019 122 NKERLKENLDIF 133 (175)
Q Consensus 122 ~~~~l~enl~a~ 133 (175)
+.+.+++.++.+
T Consensus 158 ~~~ei~~av~~~ 169 (347)
T COG2089 158 TIEEIEEAVAIL 169 (347)
T ss_pred cHHHHHHHHHHH
Confidence 988888888665
No 44
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=59.39 E-value=87 Score=24.73 Aligned_cols=66 Identities=18% Similarity=0.108 Sum_probs=45.0
Q ss_pred HHHHHHHcCCccEEEecCCCHHHHHHHHHhCCCCceEeccccCcccccHHHHHHHHhCCCeEEEecCC
Q 037019 5 AMEVCQRLGLTKFIGVSNFSSKKIEALLAFSTIPPSVNQVEMNPAWQQRQLREFCKSKSIIVNVFSPL 72 (175)
Q Consensus 5 ~l~~l~~~GkIr~iGvS~~~~~~i~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~gi~vi~~~~l 72 (175)
.++.+++.-.+ -|.|-+++++.++++++.+...+.+|-+.... .+...+++.++++|+.++....-
T Consensus 60 ~v~~l~~~~~~-plsIDT~~~~v~eaaL~~~~G~~iINsIs~~~-~~~~~~~~l~~~~g~~vv~m~~~ 125 (261)
T PRK07535 60 LVETVQEVVDV-PLCIDSPNPAAIEAGLKVAKGPPLINSVSAEG-EKLEVVLPLVKKYNAPVVALTMD 125 (261)
T ss_pred HHHHHHHhCCC-CEEEeCCCHHHHHHHHHhCCCCCEEEeCCCCC-ccCHHHHHHHHHhCCCEEEEecC
Confidence 44445443222 37889999999999998754455555554421 23468999999999999986543
No 45
>TIGR01378 thi_PPkinase thiamine pyrophosphokinase. This model has been revised. Originally, it described strictly eukaryotic thiamine pyrophosphokinase. However, it is now expanded to include also homologous enzymes, apparently functionally equivalent, from species that rely on thiamine pyrophosphokinase rather than thiamine-monophosphate kinase (TIGR01379) to produce the active TPP cofactor. This includes the thiamine pyrophosphokinase from Bacillus subtilis, previously designated YloS.
Probab=59.29 E-value=52 Score=24.81 Aligned_cols=73 Identities=19% Similarity=0.356 Sum_probs=49.1
Q ss_pred CCCCceEeccccCcccccHHHHHHHHhCCCeEEEecCCCCCCCCCCCccccChHHHHHHHHHhCCCHHHHHHHHHHhCC-
Q 037019 35 STIPPSVNQVEMNPAWQQRQLREFCKSKSIIVNVFSPLGAVGSCWGTNQVMNNEALKQIADAHGETVAQVCLRWIIEQG- 113 (175)
Q Consensus 35 ~~~~~~~~q~~~~~~~~~~~~~~~~~~~gi~vi~~~~l~~~G~l~~~~~~~~~~~l~~~a~~~g~~~~q~al~~~l~~~- 113 (175)
.++.|+++--.+-- -.++.+++.+++++.++.+.+-- ..|-.++|++|++.++
T Consensus 34 ~gi~Pd~iiGDfDS--i~~~~~~~~~~~~~~~~~~~~eK------------------------D~TD~e~Al~~~~~~~~ 87 (203)
T TIGR01378 34 LGLTPDLIVGDFDS--IDEEELDFYKKAGVKIIVFPPEK------------------------DTTDLELALKYALERGA 87 (203)
T ss_pred CCCCCCEEEeCccc--CCHHHHHHHHHcCCceEEcCCCC------------------------CCCHHHHHHHHHHHCCC
Confidence 34455555444421 13567777778887777654432 3678899999999887
Q ss_pred -cEEEecCC--CHHHHHHhhccc
Q 037019 114 -AIVIAKSF--NKERLKENLDIF 133 (175)
Q Consensus 114 -~~~i~G~~--~~~~l~enl~a~ 133 (175)
.+.+.|+. ..+|.-.|+..+
T Consensus 88 ~~i~i~Ga~GgR~DH~lani~~L 110 (203)
T TIGR01378 88 DEITILGATGGRLDHTLANLNLL 110 (203)
T ss_pred CEEEEEcCCCCcHHHHHHHHHHH
Confidence 57777765 688888888764
No 46
>cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD. NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=57.71 E-value=66 Score=27.41 Aligned_cols=64 Identities=17% Similarity=0.228 Sum_probs=45.7
Q ss_pred HHHHHcCCccEEEecCCCHHHHHHHHHhC------CCCceEeccccCcccc--cHHHHHHHHhCCCeEEEecC
Q 037019 7 EVCQRLGLTKFIGVSNFSSKKIEALLAFS------TIPPSVNQVEMNPAWQ--QRQLREFCKSKSIIVNVFSP 71 (175)
Q Consensus 7 ~~l~~~GkIr~iGvS~~~~~~i~~~~~~~------~~~~~~~q~~~~~~~~--~~~~~~~~~~~gi~vi~~~~ 71 (175)
..+-+.|-...+|..+.+++++++.++.. +.+|-+|-+ .++-+. +..+++.+.++||.++..+.
T Consensus 32 aAvs~AGgLG~lgag~l~~e~l~~~I~~ir~~lt~~~PfGVNL~-~~~~~~~~e~~~v~l~le~gV~~ve~sa 103 (418)
T cd04742 32 VAMGKAGMLGFFGAGGLPLDEVEQAIERIQAALGNGEPYGVNLI-HSPDEPELEEGLVDLFLRHGVRVVEASA 103 (418)
T ss_pred HHHHhCCCeeeecCCCCCHHHHHHHHHHHHHhccCCCCeEEeee-cCCCCchhHHHHHHHHHHcCCCEEEecc
Confidence 44557899999999999999998765433 335666664 233222 35789999999998877654
No 47
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=57.64 E-value=99 Score=24.86 Aligned_cols=85 Identities=9% Similarity=0.058 Sum_probs=49.0
Q ss_pred CHHHHHHHHHhCCCCceEeccccCccccc------HHHHHHHHhCCCeE-EEecCCCCCC--CCCCCccccChHHHHHHH
Q 037019 24 SSKKIEALLAFSTIPPSVNQVEMNPAWQQ------RQLREFCKSKSIIV-NVFSPLGAVG--SCWGTNQVMNNEALKQIA 94 (175)
Q Consensus 24 ~~~~i~~~~~~~~~~~~~~q~~~~~~~~~------~~~~~~~~~~gi~v-i~~~~l~~~G--~l~~~~~~~~~~~l~~~a 94 (175)
+.+.+.++++. .|..+++.-|-+..+ .++.++|+..|+.| .-.+.+++.. -......+...+...++.
T Consensus 86 ~~e~i~~Ai~~---GftSVM~DgS~l~~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg~ed~~~~~~~~~T~pe~a~~Fv 162 (283)
T PRK07998 86 TFEDVKQAVRA---GFTSVMIDGAALPFEENIAFTKEAVDFAKSYGVPVEAELGAILGKEDDHVSEADCKTEPEKVKDFV 162 (283)
T ss_pred CHHHHHHHHHc---CCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeccCCCccccccccccccCCHHHHHHHH
Confidence 55666666654 467777776655442 68999999999987 3444443300 000011133456667777
Q ss_pred HHhCCCHHHHHHHHHHhCC
Q 037019 95 DAHGETVAQVCLRWIIEQG 113 (175)
Q Consensus 95 ~~~g~~~~q~al~~~l~~~ 113 (175)
++.|+. .+|+++--.|+
T Consensus 163 ~~TgvD--~LAvaiGt~HG 179 (283)
T PRK07998 163 ERTGCD--MLAVSIGNVHG 179 (283)
T ss_pred HHhCcC--eeehhcccccc
Confidence 777755 44555544444
No 48
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=57.55 E-value=39 Score=29.64 Aligned_cols=68 Identities=10% Similarity=0.026 Sum_probs=44.9
Q ss_pred CHHHHHHHHHHc-CCccEEEecCCCHHHHHHHHHhCCCCceEeccccCcccccHHHHHHHHhCCCeEEEecC
Q 037019 1 GLWEAMEVCQRL-GLTKFIGVSNFSSKKIEALLAFSTIPPSVNQVEMNPAWQQRQLREFCKSKSIIVNVFSP 71 (175)
Q Consensus 1 e~~~~l~~l~~~-GkIr~iGvS~~~~~~i~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~gi~vi~~~~ 71 (175)
|++.+|..+++- ++|--+|+.+.. ..+..+.+..+ ..+.+..|+--......+..+++.|+.++....
T Consensus 85 Dil~al~~a~~~~~~ia~vg~~~~~-~~~~~~~~ll~--~~i~~~~~~~~~e~~~~~~~l~~~G~~~viG~~ 153 (526)
T TIGR02329 85 DVMQALARARRIASSIGVVTHQDTP-PALRRFQAAFN--LDIVQRSYVTEEDARSCVNDLRARGIGAVVGAG 153 (526)
T ss_pred hHHHHHHHHHhcCCcEEEEecCccc-HHHHHHHHHhC--CceEEEEecCHHHHHHHHHHHHHCCCCEEECCh
Confidence 456777777764 788888888864 34445544443 345555555434446788899999999988443
No 49
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=55.48 E-value=62 Score=25.98 Aligned_cols=68 Identities=9% Similarity=0.015 Sum_probs=44.6
Q ss_pred HHHHHHHHHcCCcc-EEEecCCCHHHHHHHHHhCCCCceEeccccCcccc---cHHHHHHHHhCCCeEEEecCC
Q 037019 3 WEAMEVCQRLGLTK-FIGVSNFSSKKIEALLAFSTIPPSVNQVEMNPAWQ---QRQLREFCKSKSIIVNVFSPL 72 (175)
Q Consensus 3 ~~~l~~l~~~GkIr-~iGvS~~~~~~i~~~~~~~~~~~~~~q~~~~~~~~---~~~~~~~~~~~gi~vi~~~~l 72 (175)
++.+.++++...|. ..|=+-+++..+..+++.. ..+++|+....+-. ...+..+|+++|+.++..+-+
T Consensus 217 ~~~~~~L~~~~~ipIa~~E~~~~~~~~~~~~~~~--~~d~v~~~~~~~GGi~~~~~~~~~a~~~gi~~~~~~~~ 288 (316)
T cd03319 217 DDGLAYLRDKSPLPIMADESCFSAADAARLAGGG--AYDGINIKLMKTGGLTEALRIADLARAAGLKVMVGCMV 288 (316)
T ss_pred HHHHHHHHhcCCCCEEEeCCCCCHHHHHHHHhcC--CCCEEEEeccccCCHHHHHHHHHHHHHcCCCEEEECch
Confidence 56677777776666 2334446778887777654 34666666554322 267888888888888886544
No 50
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=54.99 E-value=1e+02 Score=24.13 Aligned_cols=66 Identities=15% Similarity=0.134 Sum_probs=45.5
Q ss_pred HHHHHHHHcCCccEEEecCCCHHHHHHHHHhCCCCceEeccccCcccccHHHHHHHHhCCCeEEEecCCCC
Q 037019 4 EAMEVCQRLGLTKFIGVSNFSSKKIEALLAFSTIPPSVNQVEMNPAWQQRQLREFCKSKSIIVNVFSPLGA 74 (175)
Q Consensus 4 ~~l~~l~~~GkIr~iGvS~~~~~~i~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~gi~vi~~~~l~~ 74 (175)
.+++.+++.-++. +.|-+++++.++++++.. ...+|-+ +....+.++++.++++|..++.+..-+.
T Consensus 66 ~~v~~l~~~~~~p-iSIDT~~~~v~~aaL~~g--~~iINdi--s~~~~~~~~~~l~~~~~~~vV~m~~~~~ 131 (258)
T cd00423 66 PVLRALAGEPDVP-ISVDTFNAEVAEAALKAG--ADIINDV--SGGRGDPEMAPLAAEYGAPVVLMHMDGT 131 (258)
T ss_pred HHHHHHHhcCCCe-EEEeCCcHHHHHHHHHhC--CCEEEeC--CCCCCChHHHHHHHHcCCCEEEECcCCC
Confidence 3455565553333 899999999999999875 3334433 3333237899999999999999875543
No 51
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=54.62 E-value=1.1e+02 Score=24.41 Aligned_cols=84 Identities=15% Similarity=0.083 Sum_probs=51.3
Q ss_pred HHHHHHHHhCCCeEEEecCCCCCCCCCCCccccChHHHHHHHHHh----------CC----C----HHHHHHHHHHhC--
Q 037019 53 RQLREFCKSKSIIVNVFSPLGAVGSCWGTNQVMNNEALKQIADAH----------GE----T----VAQVCLRWIIEQ-- 112 (175)
Q Consensus 53 ~~~~~~~~~~gi~vi~~~~l~~~G~l~~~~~~~~~~~l~~~a~~~----------g~----~----~~q~al~~~l~~-- 112 (175)
.++.++|+++||.+|...+..- ..++++.+++.- |+ + ...-.++.+.++
T Consensus 137 ~~~~~~~~~~gi~~I~lvaPtt-----------~~~rl~~i~~~a~GFiY~vs~~GvTG~~~~~~~~~~~~v~~vr~~~~ 205 (265)
T COG0159 137 DELLKAAEKHGIDPIFLVAPTT-----------PDERLKKIAEAASGFIYYVSRMGVTGARNPVSADVKELVKRVRKYTD 205 (265)
T ss_pred HHHHHHHHHcCCcEEEEeCCCC-----------CHHHHHHHHHhCCCcEEEEecccccCCCcccchhHHHHHHHHHHhcC
Confidence 5688999999998888776654 345555554432 11 1 123345555544
Q ss_pred -CcEEEecCCCHHHHHHhhcccCc-ccCHHHHHHHhc
Q 037019 113 -GAIVIAKSFNKERLKENLDIFDW-ALTDHDYDRINQ 147 (175)
Q Consensus 113 -~~~~i~G~~~~~~l~enl~a~~~-~L~~~~~~~i~~ 147 (175)
|..+=+|.++++|+++..++.+- -.-..-++.|.+
T Consensus 206 ~Pv~vGFGIs~~e~~~~v~~~ADGVIVGSAiV~~i~~ 242 (265)
T COG0159 206 VPVLVGFGISSPEQAAQVAEAADGVIVGSAIVKIIEE 242 (265)
T ss_pred CCeEEecCcCCHHHHHHHHHhCCeEEEcHHHHHHHHh
Confidence 37777899999999999888543 223334444433
No 52
>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder. It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B ....
Probab=54.39 E-value=48 Score=25.12 Aligned_cols=66 Identities=9% Similarity=0.067 Sum_probs=44.7
Q ss_pred HHHHHHHHcCCccEEEecCCCHHHHHHHHHhCCCCceEeccccCcccccHHHHHHHHhCCCeEEEecCCC
Q 037019 4 EAMEVCQRLGLTKFIGVSNFSSKKIEALLAFSTIPPSVNQVEMNPAWQQRQLREFCKSKSIIVNVFSPLG 73 (175)
Q Consensus 4 ~~l~~l~~~GkIr~iGvS~~~~~~i~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~gi~vi~~~~l~ 73 (175)
..++.+++..-=--+.|-++.++.++++++. +.++.-+...+.. .+++++.++++|..++++-.-+
T Consensus 61 ~~l~~i~~~~~~~plSIDT~~~~v~~~aL~~-g~~~ind~~~~~~---~~~~~~l~a~~~~~vV~m~~~~ 126 (210)
T PF00809_consen 61 PVLQAIREENPDVPLSIDTFNPEVAEAALKA-GADIINDISGFED---DPEMLPLAAEYGAPVVLMHSDG 126 (210)
T ss_dssp HHHHHHHHHHTTSEEEEEESSHHHHHHHHHH-TSSEEEETTTTSS---STTHHHHHHHHTSEEEEESESS
T ss_pred HHHHHHhccCCCeEEEEECCCHHHHHHHHHc-CcceEEecccccc---cchhhhhhhcCCCEEEEEeccc
Confidence 3444444411122577788999999999987 5554444433322 6789999999999999987773
No 53
>TIGR00190 thiC thiamine biosynthesis protein ThiC. The thiC ortholog is designated thiA in Bacillus subtilis.
Probab=54.05 E-value=75 Score=26.94 Aligned_cols=66 Identities=18% Similarity=0.272 Sum_probs=40.1
Q ss_pred HHHHHHHHHcCCccEEEecCCCHHHHHHHHHhCCCCceEeccccCccccc-HHHHHHHHhCCCeEEEecCCCCCCCCC
Q 037019 3 WEAMEVCQRLGLTKFIGVSNFSSKKIEALLAFSTIPPSVNQVEMNPAWQQ-RQLREFCKSKSIIVNVFSPLGAVGSCW 79 (175)
Q Consensus 3 ~~~l~~l~~~GkIr~iGvS~~~~~~i~~~~~~~~~~~~~~q~~~~~~~~~-~~~~~~~~~~gi~vi~~~~l~~~G~l~ 79 (175)
.+.++.++++| |..||-+-.-..+..++...+ .=|+++.. ..+++.|++++|.+.-.-.|.. |-+.
T Consensus 165 ~~~~~~~~~~~--R~~giVSRGGs~~~~WM~~~~--------~ENPlye~fD~lLeI~~~yDVtlSLGDglRP-G~i~ 231 (423)
T TIGR00190 165 LEYVERLKRSG--RITGIVSRGGAILAAWMLHHH--------KENPLYKNFDYILEIAKEYDVTLSLGDGLRP-GCIA 231 (423)
T ss_pred HHHHHHHHhCC--CccCeecCcHHHHHHHHHHcC--------CcCchHHHHHHHHHHHHHhCeeeeccCCcCC-Cccc
Confidence 45666666666 445555544444444332221 22566655 7799999999988877777766 6553
No 54
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=53.00 E-value=88 Score=22.85 Aligned_cols=35 Identities=14% Similarity=0.162 Sum_probs=26.0
Q ss_pred CHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHhCC
Q 037019 1 GLWEAMEVCQRLGLTKFIGVSNFSSKKIEALLAFST 36 (175)
Q Consensus 1 e~~~~l~~l~~~GkIr~iGvS~~~~~~i~~~~~~~~ 36 (175)
++.+.|+.|+++| ++-.-+||.+...+...++..+
T Consensus 96 ~~~~~L~~L~~~g-~~~~i~Sn~~~~~~~~~l~~~g 130 (198)
T TIGR01428 96 DVPAGLRALKERG-YRLAILSNGSPAMLKSLVKHAG 130 (198)
T ss_pred CHHHHHHHHHHCC-CeEEEEeCCCHHHHHHHHHHCC
Confidence 4567888999887 5566688888887777776654
No 55
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=52.56 E-value=70 Score=24.46 Aligned_cols=60 Identities=15% Similarity=0.108 Sum_probs=41.4
Q ss_pred HHHHHHHHHHcCC---ccEEEecC-CCHHHHHHHHHhCCCCceEeccccCcccccHHHHHHHHhCCCeEEE
Q 037019 2 LWEAMEVCQRLGL---TKFIGVSN-FSSKKIEALLAFSTIPPSVNQVEMNPAWQQRQLREFCKSKSIIVNV 68 (175)
Q Consensus 2 ~~~~l~~l~~~Gk---Ir~iGvS~-~~~~~i~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~gi~vi~ 68 (175)
+++++++++++-. =-.+|..+ .++++++.+.+..- .|.+ ++ ..+++++++|+++|+.++.
T Consensus 51 a~~~i~~l~~~~~~~p~~~vGaGTV~~~~~~~~a~~aGA-~Fiv-----sP-~~~~~v~~~~~~~~i~~iP 114 (213)
T PRK06552 51 ASEVIKELVELYKDDPEVLIGAGTVLDAVTARLAILAGA-QFIV-----SP-SFNRETAKICNLYQIPYLP 114 (213)
T ss_pred HHHHHHHHHHHcCCCCCeEEeeeeCCCHHHHHHHHHcCC-CEEE-----CC-CCCHHHHHHHHHcCCCEEC
Confidence 4677788876531 14688887 68888888876542 3332 22 3458899999999998887
No 56
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=52.52 E-value=15 Score=25.90 Aligned_cols=22 Identities=18% Similarity=0.280 Sum_probs=20.1
Q ss_pred HHHHHHHHhCCCeEEEecCCCC
Q 037019 53 RQLREFCKSKSIIVNVFSPLGA 74 (175)
Q Consensus 53 ~~~~~~~~~~gi~vi~~~~l~~ 74 (175)
.++++.|+++||.+++|..+.-
T Consensus 47 ge~v~a~h~~Girv~ay~~~~~ 68 (132)
T PF14871_consen 47 GEQVEACHERGIRVPAYFDFSW 68 (132)
T ss_pred HHHHHHHHHCCCEEEEEEeeec
Confidence 7899999999999999998854
No 57
>TIGR01928 menC_lowGC/arch o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are low GC gram positive bacteria and archaea. Also included in the seed and in the model are enzymes with the com-name of N-acylamino acid racemase (or the more general term, racemase / racemase family), which refers to the enzyme's industrial application as racemases, and not to its biological function as o-succinylbenzoic acid synthetase.
Probab=52.48 E-value=52 Score=26.67 Aligned_cols=71 Identities=13% Similarity=0.066 Sum_probs=51.6
Q ss_pred HHHHHHHHHHcCCcc-EEEecCCCHHHHHHHHHhCCCCceEeccccCccc---ccHHHHHHHHhCCCeEEEecCCCC
Q 037019 2 LWEAMEVCQRLGLTK-FIGVSNFSSKKIEALLAFSTIPPSVNQVEMNPAW---QQRQLREFCKSKSIIVNVFSPLGA 74 (175)
Q Consensus 2 ~~~~l~~l~~~GkIr-~iGvS~~~~~~i~~~~~~~~~~~~~~q~~~~~~~---~~~~~~~~~~~~gi~vi~~~~l~~ 74 (175)
.++.+.+++++..+. ..|=|-+++..+..+++.. -.+++|+....+- ....+...|+.+|+.++..+.+..
T Consensus 211 ~~~~~~~l~~~~~~pia~dEs~~~~~~~~~~~~~~--~~dvi~~d~~~~GGit~~~~~~~~A~~~gi~~~~~~~~es 285 (324)
T TIGR01928 211 DLSMLDELAKGTITPICLDESITSLDDARNLIELG--NVKVINIKPGRLGGLTEVQKAIETCREHGAKVWIGGMLET 285 (324)
T ss_pred HHHHHHHHHhhcCCCEeeCCCcCCHHHHHHHHHcC--CCCEEEeCcchhcCHHHHHHHHHHHHHcCCeEEEcceEcc
Confidence 467788888876555 6667778999998888755 3577777766543 236899999999999998654533
No 58
>PRK08776 cystathionine gamma-synthase; Provisional
Probab=52.08 E-value=1.2e+02 Score=25.36 Aligned_cols=70 Identities=13% Similarity=0.091 Sum_probs=47.1
Q ss_pred HHHHHHHHcCCccEEEecCCCHHHHHHHHHhCCCCceEeccccCcccc--c-HHHHHHHHhCCCeEEEecCCCC
Q 037019 4 EAMEVCQRLGLTKFIGVSNFSSKKIEALLAFSTIPPSVNQVEMNPAWQ--Q-RQLREFCKSKSIIVNVFSPLGA 74 (175)
Q Consensus 4 ~~l~~l~~~GkIr~iGvS~~~~~~i~~~~~~~~~~~~~~q~~~~~~~~--~-~~~~~~~~~~gi~vi~~~~l~~ 74 (175)
..++.+.+.+.++.+-+...+++.+++.++. +.+..++..+-|+.-. + ..+.+.|+++|+.++.=...+.
T Consensus 114 ~~~~~~~~~~g~~v~~v~~~d~~~l~~~i~~-~tklV~l~~P~NPtG~v~dl~~I~~la~~~gi~vIvD~a~a~ 186 (405)
T PRK08776 114 RLFNALAKKGHFALITADLTDPRSLADALAQ-SPKLVLIETPSNPLLRITDLRFVIEAAHKVGALTVVDNTFLS 186 (405)
T ss_pred HHHHHHHHhcCcEEEEECCCCHHHHHHhcCc-CCeEEEEECCCCCCCccCCHHHHHHHHHHcCCEEEEECCCcc
Confidence 3455555555677777766678888777642 3455566656665433 2 6799999999999988777665
No 59
>cd01822 Lysophospholipase_L1_like Lysophospholipase L1-like subgroup of SGNH-hydrolases. The best characterized member in this family is TesA, an E. coli periplasmic protein with thioesterase, esterase, arylesterase, protease and lysophospholipase activity.
Probab=51.34 E-value=85 Score=22.17 Aligned_cols=60 Identities=20% Similarity=0.061 Sum_probs=35.8
Q ss_pred CCccEEEecCCCHHHHH----HHHHhCCCCceEeccccCcccc----c------HHHHHHHHhCCCeEEEecCC
Q 037019 13 GLTKFIGVSNFSSKKIE----ALLAFSTIPPSVNQVEMNPAWQ----Q------RQLREFCKSKSIIVNVFSPL 72 (175)
Q Consensus 13 GkIr~iGvS~~~~~~i~----~~~~~~~~~~~~~q~~~~~~~~----~------~~~~~~~~~~gi~vi~~~~l 72 (175)
-.+...|+++.+...+. ..+...+.+..++++--|-... + ..+++.+++++..++..++.
T Consensus 37 ~~v~n~g~~G~~~~~~~~~l~~~~~~~~pd~v~i~~G~ND~~~~~~~~~~~~~l~~li~~~~~~~~~vil~~~~ 110 (177)
T cd01822 37 VTVINAGVSGDTTAGGLARLPALLAQHKPDLVILELGGNDGLRGIPPDQTRANLRQMIETAQARGAPVLLVGMQ 110 (177)
T ss_pred eEEEecCcCCcccHHHHHHHHHHHHhcCCCEEEEeccCcccccCCCHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 35677899987665433 3333333345555555553222 1 46888888888887776543
No 60
>PRK10528 multifunctional acyl-CoA thioesterase I and protease I and lysophospholipase L1; Provisional
Probab=50.98 E-value=97 Score=22.74 Aligned_cols=61 Identities=16% Similarity=-0.013 Sum_probs=38.6
Q ss_pred HHHcCCccEEEecCCCHHHHH----HHHHhCCCCceEeccccCccccc----------HHHHHHHHhCCCeEEEe
Q 037019 9 CQRLGLTKFIGVSNFSSKKIE----ALLAFSTIPPSVNQVEMNPAWQQ----------RQLREFCKSKSIIVNVF 69 (175)
Q Consensus 9 l~~~GkIr~iGvS~~~~~~i~----~~~~~~~~~~~~~q~~~~~~~~~----------~~~~~~~~~~gi~vi~~ 69 (175)
+.+...|...|+++.+...+. ..+.....+..++++--|-.... ..+++.++++|..++..
T Consensus 40 l~~~~~v~N~Gi~G~tt~~~~~rl~~~l~~~~pd~Vii~~GtND~~~~~~~~~~~~~l~~li~~~~~~~~~~ill 114 (191)
T PRK10528 40 WQSKTSVVNASISGDTSQQGLARLPALLKQHQPRWVLVELGGNDGLRGFPPQQTEQTLRQIIQDVKAANAQPLLM 114 (191)
T ss_pred HhhCCCEEecCcCcccHHHHHHHHHHHHHhcCCCEEEEEeccCcCccCCCHHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 445577999999998876543 22222233456666666643221 46888888888766654
No 61
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=50.35 E-value=1.4e+02 Score=24.36 Aligned_cols=19 Identities=5% Similarity=-0.011 Sum_probs=9.3
Q ss_pred HHHHHhCCCeEEEecCCCC
Q 037019 56 REFCKSKSIIVNVFSPLGA 74 (175)
Q Consensus 56 ~~~~~~~gi~vi~~~~l~~ 74 (175)
+..+++.|+.+.....+..
T Consensus 138 i~~l~~~g~~v~v~~vv~~ 156 (358)
T TIGR02109 138 ARAVKAAGLPLTLNFVIHR 156 (358)
T ss_pred HHHHHhCCCceEEEEEecc
Confidence 3445555655554444433
No 62
>cd03322 rpsA The starvation sensing protein RpsA from E.coli and its homologs are lactonizing enzymes whose putative targets are homoserine lactone (HSL)-derivative. They are part of the mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subfamily share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and catalytic residues, a partially conserved Lys-X-Lys motif and a conserved histidine-aspartate dyad.
Probab=49.28 E-value=71 Score=26.31 Aligned_cols=69 Identities=13% Similarity=0.046 Sum_probs=52.2
Q ss_pred HHHHHHHHHHcCCcc-EEEecCCCHHHHHHHHHhCCCCceEeccccCccc---ccHHHHHHHHhCCCeEEEecCC
Q 037019 2 LWEAMEVCQRLGLTK-FIGVSNFSSKKIEALLAFSTIPPSVNQVEMNPAW---QQRQLREFCKSKSIIVNVFSPL 72 (175)
Q Consensus 2 ~~~~l~~l~~~GkIr-~iGvS~~~~~~i~~~~~~~~~~~~~~q~~~~~~~---~~~~~~~~~~~~gi~vi~~~~l 72 (175)
-++.+.+|++...+. ..|=|-+++..+..+++.. .++++|+....+- ....+.++|+++|+.++.....
T Consensus 202 d~~~~~~L~~~~~~pia~gE~~~~~~~~~~~i~~~--a~di~~~d~~~~GGit~~~~ia~~A~~~gi~~~~h~~~ 274 (361)
T cd03322 202 NQEAFRLIRQHTATPLAVGEVFNSIWDWQNLIQER--LIDYIRTTVSHAGGITPARKIADLASLYGVRTGWHGPT 274 (361)
T ss_pred cHHHHHHHHhcCCCCEEeccCCcCHHHHHHHHHhC--CCCEEecCccccCCHHHHHHHHHHHHHcCCeeeccCCC
Confidence 357788888887776 6677778999999888764 3678888766533 3368999999999999876544
No 63
>PF12728 HTH_17: Helix-turn-helix domain
Probab=49.22 E-value=47 Score=18.62 Aligned_cols=31 Identities=10% Similarity=0.090 Sum_probs=22.4
Q ss_pred HHHHHHHHcCCccEEEecC---CCHHHHHHHHHh
Q 037019 4 EAMEVCQRLGLTKFIGVSN---FSSKKIEALLAF 34 (175)
Q Consensus 4 ~~l~~l~~~GkIr~iGvS~---~~~~~i~~~~~~ 34 (175)
.++.++.++|.|+.+++.. ++.+.+.+.++.
T Consensus 16 ~tv~~~~~~g~i~~~~~g~~~~~~~~~l~~~~~~ 49 (51)
T PF12728_consen 16 STVYRWIRQGKIPPFKIGRKWRIPKSDLDRWLER 49 (51)
T ss_pred HHHHHHHHcCCCCeEEeCCEEEEeHHHHHHHHHh
Confidence 4567788888888888655 577777776653
No 64
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=48.74 E-value=64 Score=25.23 Aligned_cols=66 Identities=20% Similarity=0.384 Sum_probs=39.7
Q ss_pred HHHHHHHHhCCCeEEEecCCCCCCCCCCCccccChHHHHHHHHHhCC---------CHHHHHHHHHHhCC--cEEEecCC
Q 037019 53 RQLREFCKSKSIIVNVFSPLGAVGSCWGTNQVMNNEALKQIADAHGE---------TVAQVCLRWIIEQG--AIVIAKSF 121 (175)
Q Consensus 53 ~~~~~~~~~~gi~vi~~~~l~~~G~l~~~~~~~~~~~l~~~a~~~g~---------~~~q~al~~~l~~~--~~~i~G~~ 121 (175)
.++.++|+++||.+++ +|+.- +.+ ++..++++ -..--.|+++.+.+ .+.-.|++
T Consensus 59 ~~L~~~~~~~gi~f~s-tpfd~-------------~s~-d~l~~~~~~~~KIaS~dl~n~~lL~~~A~tgkPvIlSTG~s 123 (241)
T PF03102_consen 59 KELFEYCKELGIDFFS-TPFDE-------------ESV-DFLEELGVPAYKIASGDLTNLPLLEYIAKTGKPVILSTGMS 123 (241)
T ss_dssp HHHHHHHHHTT-EEEE-EE-SH-------------HHH-HHHHHHT-SEEEE-GGGTT-HHHHHHHHTT-S-EEEE-TT-
T ss_pred HHHHHHHHHcCCEEEE-CCCCH-------------HHH-HHHHHcCCCEEEeccccccCHHHHHHHHHhCCcEEEECCCC
Confidence 6799999999999987 45532 111 22233331 11233677777766 77777999
Q ss_pred CHHHHHHhhccc
Q 037019 122 NKERLKENLDIF 133 (175)
Q Consensus 122 ~~~~l~enl~a~ 133 (175)
+.++|++.++.+
T Consensus 124 tl~EI~~Av~~~ 135 (241)
T PF03102_consen 124 TLEEIERAVEVL 135 (241)
T ss_dssp -HHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 999999999887
No 65
>TIGR00290 MJ0570_dom MJ0570-related uncharacterized domain. Proteins with this uncharacterized domain include two apparent ortholog families in the Archaea, one of which is universal among the first four completed archaeal genomes, and YLR143W, a much longer protein from Saccharomyces cerevisiae. The domain comprises the full length of the archaeal proteins and the first third of the yeast protein.
Probab=48.42 E-value=1.3e+02 Score=23.32 Aligned_cols=112 Identities=10% Similarity=0.146 Sum_probs=65.7
Q ss_pred CHHHHHHHHHhCCCCceEeccccCccccc--HHHHHHHHhCCCeEEEecCCCCCCCCCCCccccChHHHHHHHHHhC---
Q 037019 24 SSKKIEALLAFSTIPPSVNQVEMNPAWQQ--RQLREFCKSKSIIVNVFSPLGAVGSCWGTNQVMNNEALKQIADAHG--- 98 (175)
Q Consensus 24 ~~~~i~~~~~~~~~~~~~~q~~~~~~~~~--~~~~~~~~~~gi~vi~~~~l~~~G~l~~~~~~~~~~~l~~~a~~~g--- 98 (175)
+.+.++...+..++++..+. +..-..+ .++.+..++.|+..++.+.+.. .. ....+..+|.+.|
T Consensus 46 ~~~~~~~qA~algipl~~~~--~~~~~e~~~e~l~~~l~~~gv~~vv~GdI~s-------~~--qr~~~e~v~~~lgl~~ 114 (223)
T TIGR00290 46 NAHLTDLQAESIGIPLIKLY--TEGTEEDEVEELKGILHTLDVEAVVFGAIYS-------EY--QKTRIERVCRELGLKS 114 (223)
T ss_pred CHHHHHHHHHHcCCCeEEee--cCCCccHHHHHHHHHHHHcCCCEEEECCccc-------HH--HHHHHHHHHHhcCCEE
Confidence 45556666666666543322 2211122 5688888888988888777765 11 3466778888876
Q ss_pred ------CCHHHHHHHHHHhCC-cEEEecCCCHHHHHHhhcccCcccCHHHHHHHhccCC
Q 037019 99 ------ETVAQVCLRWIIEQG-AIVIAKSFNKERLKENLDIFDWALTDHDYDRINQIPQ 150 (175)
Q Consensus 99 ------~~~~q~al~~~l~~~-~~~i~G~~~~~~l~enl~a~~~~L~~~~~~~i~~~~~ 150 (175)
.+..+++-.++ ..+ -.+|+++... .|.+ ..++..++++.++.|.++.+
T Consensus 115 ~~PLW~~~~~~ll~e~i-~~G~~aiIv~v~a~-gL~~--~~LGr~i~~e~i~~L~~~~~ 169 (223)
T TIGR00290 115 FAPLWHRDPEKLMEEFV-EEKFEARIIAVAAE-GLDE--SWLGRRIDRKMIDELKKLNE 169 (223)
T ss_pred eccccCCCHHHHHHHHH-HcCCeEEEEEEecC-CCCh--HHcCCcccHHHHHHHHHHHh
Confidence 34455444444 666 4445444432 3332 33455888888888877643
No 66
>PRK13352 thiamine biosynthesis protein ThiC; Provisional
Probab=47.52 E-value=1.1e+02 Score=26.05 Aligned_cols=65 Identities=18% Similarity=0.312 Sum_probs=39.3
Q ss_pred HHHHHHHHcCCccEEEecCCCHHHHHHHHHhCCCCceEeccccCccccc-HHHHHHHHhCCCeEEEecCCCCCCCCC
Q 037019 4 EAMEVCQRLGLTKFIGVSNFSSKKIEALLAFSTIPPSVNQVEMNPAWQQ-RQLREFCKSKSIIVNVFSPLGAVGSCW 79 (175)
Q Consensus 4 ~~l~~l~~~GkIr~iGvS~~~~~~i~~~~~~~~~~~~~~q~~~~~~~~~-~~~~~~~~~~gi~vi~~~~l~~~G~l~ 79 (175)
+.++.++++| |..||-+-.-..+..++...+ .=|++... ..+++.|++++|.+.-.-.|.. |-+.
T Consensus 169 ~~~~~~~~~~--R~~giVSRGGs~~~~WM~~n~--------~ENPlye~fD~lLeI~~~yDVtlSLGDglRP-G~i~ 234 (431)
T PRK13352 169 ETLERLKKSG--RIMGIVSRGGSFLAAWMLHNN--------KENPLYEHFDYLLEILKEYDVTLSLGDGLRP-GCIA 234 (431)
T ss_pred HHHHHHHhcC--CccCeecCCHHHHHHHHHHcC--------CcCchHHHHHHHHHHHHHhCeeeeccCCcCC-Cccc
Confidence 4556666655 344544444444433332221 23666666 7899999999999887777766 6553
No 67
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=47.35 E-value=73 Score=28.06 Aligned_cols=68 Identities=12% Similarity=0.008 Sum_probs=45.7
Q ss_pred CHHHHHHHHHHc-CCccEEEecCCCHHHHHHHHHhCCCCceEeccccCcccccHHHHHHHHhCCCeEEEecC
Q 037019 1 GLWEAMEVCQRL-GLTKFIGVSNFSSKKIEALLAFSTIPPSVNQVEMNPAWQQRQLREFCKSKSIIVNVFSP 71 (175)
Q Consensus 1 e~~~~l~~l~~~-GkIr~iGvS~~~~~~i~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~gi~vi~~~~ 71 (175)
|++++|..+++- ++|--+|+.+.. ..+..+.+..+ ..+.+..|+--+.....+..+++.|+.++....
T Consensus 95 Dil~al~~a~~~~~~iavv~~~~~~-~~~~~~~~~l~--~~i~~~~~~~~~e~~~~v~~lk~~G~~~vvG~~ 163 (538)
T PRK15424 95 DVMQALARARKLTSSIGVVTYQETI-PALVAFQKTFN--LRIEQRSYVTEEDARGQINELKANGIEAVVGAG 163 (538)
T ss_pred HHHHHHHHHHhcCCcEEEEecCccc-HHHHHHHHHhC--CceEEEEecCHHHHHHHHHHHHHCCCCEEEcCc
Confidence 456777777754 788888888864 33445554443 355666665444447789999999999998543
No 68
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=47.34 E-value=73 Score=28.11 Aligned_cols=68 Identities=13% Similarity=-0.022 Sum_probs=45.3
Q ss_pred HHHHHHHHHHcCCccEEEecCCCHHHHHHHHHhCCCCceEeccccCcccccHHHHHHHHhCCCeEEEe
Q 037019 2 LWEAMEVCQRLGLTKFIGVSNFSSKKIEALLAFSTIPPSVNQVEMNPAWQQRQLREFCKSKSIIVNVF 69 (175)
Q Consensus 2 ~~~~l~~l~~~GkIr~iGvS~~~~~~i~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~gi~vi~~ 69 (175)
+.+-+-+.+++.+|+.+|+-.+....+...++..+++++.+--.|.-+...-.-++..-..|..+...
T Consensus 415 I~ew~~~~~~~~~i~~v~~D~~g~~~~~~~l~~~g~~lv~i~Q~~~~l~~~~k~~e~~~~~g~i~~~d 482 (546)
T COG4626 415 IVEWFMEIREKFLIKLVGFDPSGAGEFRDALAEAGIKVVGIPQGFKKLSGAIKTIERKLAEGVLVHGD 482 (546)
T ss_pred HHHHHHHHHHhCCccEEeecccchHHHHHHHHhCCCceeeccchhhhhCchhHHHHHHHhcCcEEECC
Confidence 45667778899999999999999999999998888776555555543333333333333444444333
No 69
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=46.94 E-value=93 Score=24.22 Aligned_cols=68 Identities=15% Similarity=0.080 Sum_probs=35.8
Q ss_pred HHHHHHHHHcCCcc-EEEecCCCHHHHHHHHHhCCCCceEeccccCcccc---cHHHHHHHHhCCCeEEEecCC
Q 037019 3 WEAMEVCQRLGLTK-FIGVSNFSSKKIEALLAFSTIPPSVNQVEMNPAWQ---QRQLREFCKSKSIIVNVFSPL 72 (175)
Q Consensus 3 ~~~l~~l~~~GkIr-~iGvS~~~~~~i~~~~~~~~~~~~~~q~~~~~~~~---~~~~~~~~~~~gi~vi~~~~l 72 (175)
++.+.++++.-.|. ..|=+-+++..+.++++.. .++++|+..+..-. ...+..+|+++|+.++..+.+
T Consensus 169 ~~~~~~l~~~~~ipia~dE~~~~~~~~~~~i~~~--~~d~v~~k~~~~GGi~~~~~~~~~A~~~gi~~~~~~~~ 240 (265)
T cd03315 169 LEGRAALARATDTPIMADESAFTPHDAFRELALG--AADAVNIKTAKTGGLTKAQRVLAVAEALGLPVMVGSMI 240 (265)
T ss_pred HHHHHHHHhhCCCCEEECCCCCCHHHHHHHHHhC--CCCEEEEecccccCHHHHHHHHHHHHHcCCcEEecCcc
Confidence 44555666554444 2333335666666655443 24555555443322 245666777777777665443
No 70
>PRK13753 dihydropteroate synthase; Provisional
Probab=45.88 E-value=1.3e+02 Score=24.12 Aligned_cols=64 Identities=8% Similarity=0.013 Sum_probs=46.5
Q ss_pred HHHHHHHHHcCCccEEEecCCCHHHHHHHHHhCCCCceEeccccCcccccHHHHHHHHhCCCeEEEecCCC
Q 037019 3 WEAMEVCQRLGLTKFIGVSNFSSKKIEALLAFSTIPPSVNQVEMNPAWQQRQLREFCKSKSIIVNVFSPLG 73 (175)
Q Consensus 3 ~~~l~~l~~~GkIr~iGvS~~~~~~i~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~gi~vi~~~~l~ 73 (175)
...++.+++.+. -|.|-++.++.++++++.. .. .++-+ +-+ .++.+.+.+.+.+++++.+-..+
T Consensus 66 ~pvI~~l~~~~~--~ISIDT~~~~va~~al~aG-ad-iINDV--sg~-~d~~~~~vva~~~~~vVlmH~~~ 129 (279)
T PRK13753 66 APLLDALSDQMH--RVSIDSFQPETQRYALKRG-VG-YLNDI--QGF-PDPALYPDIAEADCRLVVMHSAQ 129 (279)
T ss_pred HHHHHHHHhCCC--cEEEECCCHHHHHHHHHcC-CC-EEEeC--CCC-CchHHHHHHHHcCCCEEEEecCC
Confidence 356677777653 4899999999999999753 22 23333 333 36889999999999999988765
No 71
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=45.44 E-value=94 Score=21.02 Aligned_cols=37 Identities=24% Similarity=0.252 Sum_probs=25.4
Q ss_pred CHHHHHHHHHHcCCccEEEecCCC--------HHHHHHHHHhCCCC
Q 037019 1 GLWEAMEVCQRLGLTKFIGVSNFS--------SKKIEALLAFSTIP 38 (175)
Q Consensus 1 e~~~~l~~l~~~GkIr~iGvS~~~--------~~~i~~~~~~~~~~ 38 (175)
++.+.|+.|+++| ++-+=+||.+ .+.+.+.++..+..
T Consensus 29 ~v~~~l~~L~~~g-~~l~i~Sn~~~~~~~~~~~~~~~~~l~~~~l~ 73 (132)
T TIGR01662 29 EVPDALAELKEAG-YKVVIVTNQSGIGRGKFSSGRVARRLEELGVP 73 (132)
T ss_pred CHHHHHHHHHHCC-CEEEEEECCccccccHHHHHHHHHHHHHCCCC
Confidence 4677889998886 5555577766 56677777666543
No 72
>COG1831 Predicted metal-dependent hydrolase (urease superfamily) [General function prediction only]
Probab=45.27 E-value=65 Score=25.77 Aligned_cols=63 Identities=16% Similarity=0.106 Sum_probs=36.3
Q ss_pred HHHHHHHHHHcCCccEEEecCC-----CHHH-------HHHHHHhCCCCceEeccccCcccc-c-HHHHHHHHhCCC
Q 037019 2 LWEAMEVCQRLGLTKFIGVSNF-----SSKK-------IEALLAFSTIPPSVNQVEMNPAWQ-Q-RQLREFCKSKSI 64 (175)
Q Consensus 2 ~~~~l~~l~~~GkIr~iGvS~~-----~~~~-------i~~~~~~~~~~~~~~q~~~~~~~~-~-~~~~~~~~~~gi 64 (175)
.++..++++++|++-.||=+++ +.+. +..+++.+.--=+.+|++---.+. + .++-+++++.|+
T Consensus 109 ~lelA~k~v~eg~avaiGEvGrPHypVs~~v~~~~n~vl~~a~elA~dvdc~vqLHtes~~~~~~~~i~~~ak~~G~ 185 (285)
T COG1831 109 ALELAAKLVEEGKAVAIGEVGRPHYPVSEEVWEASNEVLEYAMELAKDVDCAVQLHTESLDEETYEEIAEMAKEAGI 185 (285)
T ss_pred HHHHHHHHHhccceeeeeccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCcEEEecCCCChHHHHHHHHHHHHhCC
Confidence 4677889999999999987774 2222 233334443111234443322232 2 567778888776
No 73
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=44.23 E-value=2e+02 Score=24.54 Aligned_cols=117 Identities=13% Similarity=0.082 Sum_probs=66.4
Q ss_pred HHHHHHHHHHcC-CccEEEecC--C--CHHHHHHHHHh---CCCCceEeccccCcccccHHHHHHHHhCCCeEEEecCCC
Q 037019 2 LWEAMEVCQRLG-LTKFIGVSN--F--SSKKIEALLAF---STIPPSVNQVEMNPAWQQRQLREFCKSKSIIVNVFSPLG 73 (175)
Q Consensus 2 ~~~~l~~l~~~G-kIr~iGvS~--~--~~~~i~~~~~~---~~~~~~~~q~~~~~~~~~~~~~~~~~~~gi~vi~~~~l~ 73 (175)
+++.++.+++.. .++.|-+.. | +...+.++++. .++.+.+ +.. .+.+.++++..++.|+..+..+.=+
T Consensus 232 V~~Ei~~~~~~~~~~~~i~f~Dd~f~~~~~~~~~l~~~l~~~~i~~~~-~~~---~~~~~e~l~~l~~aG~~~v~iGiES 307 (472)
T TIGR03471 232 VIEEVKYALENFPEVREFFFDDDTFTDDKPRAEEIARKLGPLGVTWSC-NAR---ANVDYETLKVMKENGLRLLLVGYES 307 (472)
T ss_pred HHHHHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHhhcCceEEE-Eec---CCCCHHHHHHHHHcCCCEEEEcCCC
Confidence 456677777763 567665543 3 34444444332 2222211 111 1235789999999998776654444
Q ss_pred CCCCCCCCccccChHHHHHHHHHhCCCHHHHHHHHHHhCC----cEEEecC--CCHHHHHHhhccc
Q 037019 74 AVGSCWGTNQVMNNEALKQIADAHGETVAQVCLRWIIEQG----AIVIAKS--FNKERLKENLDIF 133 (175)
Q Consensus 74 ~~G~l~~~~~~~~~~~l~~~a~~~g~~~~q~al~~~l~~~----~~~i~G~--~~~~~l~enl~a~ 133 (175)
+ ..+.++.+-+.+......-+++.+...+ ...|+|. .+.+.+++.++.+
T Consensus 308 ~-----------s~~~L~~~~K~~~~~~~~~~i~~~~~~Gi~v~~~~IiGlPget~e~~~~ti~~~ 362 (472)
T TIGR03471 308 G-----------DQQILKNIKKGLTVEIARRFTRDCHKLGIKVHGTFILGLPGETRETIRKTIDFA 362 (472)
T ss_pred C-----------CHHHHHHhcCCCCHHHHHHHHHHHHHCCCeEEEEEEEeCCCCCHHHHHHHHHHH
Confidence 3 2344555533332233445667777776 4557774 6888888887654
No 74
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=44.09 E-value=1.2e+02 Score=24.69 Aligned_cols=121 Identities=12% Similarity=0.084 Sum_probs=58.5
Q ss_pred HHHHHHHHHHcCCccEEEecC-----CCHHHHHHHHHhCCC---CceEe-ccc--c-----CcccccHHHHHHHHhCCCe
Q 037019 2 LWEAMEVCQRLGLTKFIGVSN-----FSSKKIEALLAFSTI---PPSVN-QVE--M-----NPAWQQRQLREFCKSKSII 65 (175)
Q Consensus 2 ~~~~l~~l~~~GkIr~iGvS~-----~~~~~i~~~~~~~~~---~~~~~-q~~--~-----~~~~~~~~~~~~~~~~gi~ 65 (175)
+.+.+..+++.| ++.|.+.+ ...+.+.++++..+- .+.+. ... . +.-....+.+...++.|+.
T Consensus 75 I~e~~~~~~~~G-~~~i~l~gG~~p~~~~~~~~~i~~~Ik~~~~~i~~~~~t~~ei~~~~~~~g~~~~e~l~~LkeAGl~ 153 (343)
T TIGR03551 75 IAERAAEAWKAG-ATEVCIQGGIHPDLDGDFYLDILRAVKEEVPGMHIHAFSPMEVYYGARNSGLSVEEALKRLKEAGLD 153 (343)
T ss_pred HHHHHHHHHHCC-CCEEEEEeCCCCCCCHHHHHHHHHHHHHHCCCceEEecCHHHHHHHHHHcCCCHHHHHHHHHHhCcc
Confidence 456677777776 77777762 244444444432221 11111 000 0 1112236788888888877
Q ss_pred EEEecCCCCCCCCCCCccccChHHHHHHHHHh-CCCHHHHHHHHHHhCC----cEEEec-CCCHHHHHHhhccc
Q 037019 66 VNVFSPLGAVGSCWGTNQVMNNEALKQIADAH-GETVAQVCLRWIIEQG----AIVIAK-SFNKERLKENLDIF 133 (175)
Q Consensus 66 vi~~~~l~~~G~l~~~~~~~~~~~l~~~a~~~-g~~~~q~al~~~l~~~----~~~i~G-~~~~~~l~enl~a~ 133 (175)
-+. .. | ......+....++... .....--+++++...+ +..++| .-+.+++.+.+..+
T Consensus 154 ~i~----~~-~-----~E~~~~~v~~~i~~~~~~~~~~~~~i~~a~~~Gi~v~s~~i~G~~Et~ed~~~~l~~l 217 (343)
T TIGR03551 154 SMP----GT-A-----AEILDDEVRKVICPDKLSTAEWIEIIKTAHKLGIPTTATIMYGHVETPEHWVDHLLIL 217 (343)
T ss_pred ccc----Cc-c-----hhhcCHHHHHhcCCCCCCHHHHHHHHHHHHHcCCcccceEEEecCCCHHHHHHHHHHH
Confidence 553 11 1 1222233333343221 1111234566666665 566777 34566666666553
No 75
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=42.99 E-value=94 Score=22.35 Aligned_cols=72 Identities=17% Similarity=0.088 Sum_probs=46.8
Q ss_pred EEEecCCC--HHHHHHHHHhCCCCceEeccccCcccccHHHHHHHHhCCCeEEEecCCCCCCCCCCCccccChHHHHHHH
Q 037019 17 FIGVSNFS--SKKIEALLAFSTIPPSVNQVEMNPAWQQRQLREFCKSKSIIVNVFSPLGAVGSCWGTNQVMNNEALKQIA 94 (175)
Q Consensus 17 ~iGvS~~~--~~~i~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~gi~vi~~~~l~~~G~l~~~~~~~~~~~l~~~a 94 (175)
-+|...|+ ...+..++...+ |+++-... +....+....+.++++.++.-|++.+ +.+ ..-+.+.+.+
T Consensus 19 k~GlDgHd~gakvia~~l~d~G--feVi~~g~--~~tp~e~v~aA~~~dv~vIgvSsl~g-~h~------~l~~~lve~l 87 (143)
T COG2185 19 KLGLDGHDRGAKVIARALADAG--FEVINLGL--FQTPEEAVRAAVEEDVDVIGVSSLDG-GHL------TLVPGLVEAL 87 (143)
T ss_pred ccCccccccchHHHHHHHHhCC--ceEEecCC--cCCHHHHHHHHHhcCCCEEEEEeccc-hHH------HHHHHHHHHH
Confidence 35777775 445666766664 44443322 23336789999999999999999988 432 3345666666
Q ss_pred HHhCC
Q 037019 95 DAHGE 99 (175)
Q Consensus 95 ~~~g~ 99 (175)
++.|.
T Consensus 88 re~G~ 92 (143)
T COG2185 88 REAGV 92 (143)
T ss_pred HHhCC
Confidence 66663
No 76
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=42.93 E-value=50 Score=26.31 Aligned_cols=52 Identities=19% Similarity=0.190 Sum_probs=36.5
Q ss_pred CceEeccccCccccc--HHHHHHHHhCCCeEEEecCCCCCCCCCCCccccChHHHHHHHHHhCC
Q 037019 38 PPSVNQVEMNPAWQQ--RQLREFCKSKSIIVNVFSPLGAVGSCWGTNQVMNNEALKQIADAHGE 99 (175)
Q Consensus 38 ~~~~~q~~~~~~~~~--~~~~~~~~~~gi~vi~~~~l~~~G~l~~~~~~~~~~~l~~~a~~~g~ 99 (175)
-|.+.+.-||+..+. ...++.|++.||. |++...=+......+.+.++++|+
T Consensus 95 ~Pivlm~Y~Npi~~~Gie~F~~~~~~~Gvd----------GlivpDLP~ee~~~~~~~~~~~gi 148 (265)
T COG0159 95 VPIVLMTYYNPIFNYGIEKFLRRAKEAGVD----------GLLVPDLPPEESDELLKAAEKHGI 148 (265)
T ss_pred CCEEEEEeccHHHHhhHHHHHHHHHHcCCC----------EEEeCCCChHHHHHHHHHHHHcCC
Confidence 378889999986654 5689999998864 333333334455678888888874
No 77
>PRK07945 hypothetical protein; Provisional
Probab=42.89 E-value=1.9e+02 Score=23.72 Aligned_cols=93 Identities=11% Similarity=0.015 Sum_probs=47.4
Q ss_pred HHHHHHHHcCCccEEEecC---------------CCHHHHHHHHHhCCCCceEeccccCcccccHHHHHHHHhCCCeEEE
Q 037019 4 EAMEVCQRLGLTKFIGVSN---------------FSSKKIEALLAFSTIPPSVNQVEMNPAWQQRQLREFCKSKSIIVNV 68 (175)
Q Consensus 4 ~~l~~l~~~GkIr~iGvS~---------------~~~~~i~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~gi~vi~ 68 (175)
+.|.++.+.|++.-+|=-. +..+.+-+++...++.+.+|--... ..+...+++.|++.|+.++.
T Consensus 211 ~~l~~ai~~~~~dvlgH~D~~~~~~~~~~~~~~~~~~~~i~~a~~e~g~~lEINt~~~r-~~P~~~il~~a~e~G~~vti 289 (335)
T PRK07945 211 RRMLAAVANPHTDVLGHCTGRLVTGNRGTRPESKFDAEAVFAACREHGTAVEINSRPER-RDPPTRLLRLALDAGCLFSI 289 (335)
T ss_pred HHHHHHhcCCCCeEEecCchhhhccccCCCChhhcCHHHHHHHHHHhCCEEEEeCCCCC-CCChHHHHHHHHHcCCeEEe
Confidence 4556666677777777211 2223444444445555555543332 13446788888888886533
Q ss_pred ecCCCCCCCCCCCccccChHHHHHHHHHhCCCHHH
Q 037019 69 FSPLGAVGSCWGTNQVMNNEALKQIADAHGETVAQ 103 (175)
Q Consensus 69 ~~~l~~~G~l~~~~~~~~~~~l~~~a~~~g~~~~q 103 (175)
++=+. ....+-......+++++.|.++..
T Consensus 290 -gSDAH-----~p~~v~~~~~~~~~a~~~g~~~~~ 318 (335)
T PRK07945 290 -DTDAH-----APGQLDWLGYGCERAEEAGVPADR 318 (335)
T ss_pred -cCCCC-----ChhhcchHHHHHHHHHHcCCCHHH
Confidence 33333 111222223345556666665554
No 78
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=42.53 E-value=52 Score=28.16 Aligned_cols=21 Identities=29% Similarity=0.328 Sum_probs=16.3
Q ss_pred HHHHHHHHhCCCeEEEecCCC
Q 037019 53 RQLREFCKSKSIIVNVFSPLG 73 (175)
Q Consensus 53 ~~~~~~~~~~gi~vi~~~~l~ 73 (175)
.+.+..|+++||.+.+.--++
T Consensus 326 ~~~i~~~~~~Gi~v~~~~IiG 346 (472)
T TIGR03471 326 RRFTRDCHKLGIKVHGTFILG 346 (472)
T ss_pred HHHHHHHHHCCCeEEEEEEEe
Confidence 467888999999887766554
No 79
>PF13378 MR_MLE_C: Enolase C-terminal domain-like; PDB: 3FCP_B 3P0W_D 3VFC_A 3VDG_A 3FJ4_B 3CT2_B 3DGB_A 3V3W_A 3V4B_A 3NO1_E ....
Probab=42.17 E-value=45 Score=22.10 Aligned_cols=51 Identities=16% Similarity=0.164 Sum_probs=37.1
Q ss_pred cCCCHHHHHHHHHhCCCCceEeccccCccc---ccHHHHHHHHhCCCeEEEecCCCC
Q 037019 21 SNFSSKKIEALLAFSTIPPSVNQVEMNPAW---QQRQLREFCKSKSIIVNVFSPLGA 74 (175)
Q Consensus 21 S~~~~~~i~~~~~~~~~~~~~~q~~~~~~~---~~~~~~~~~~~~gi~vi~~~~l~~ 74 (175)
|.++...+.++++.. ..+++|+....+- ....+.++|+++|+.++..+. .+
T Consensus 3 ~~~~~~~~~~li~~~--a~d~~~~~~~~~GGit~~~~i~~~A~~~gi~~~~h~~-~~ 56 (111)
T PF13378_consen 3 SLFSLHDFRRLIEAG--AVDIVQIDPTRCGGITEALRIAALAEAHGIPVMPHSM-ES 56 (111)
T ss_dssp TSSSHHHHHHHHHTT--SCSEEEEBHHHHTSHHHHHHHHHHHHHTT-EEEEBSS-SS
T ss_pred CCCCHHHHHHHHHcC--CCCEEEeCchhcCCHHHHHHHHHHHHHhCCCEEecCC-CC
Confidence 457888888888855 3477777655442 237899999999999999886 44
No 80
>COG1358 RPL8A Ribosomal protein HS6-type (S12/L30/L7a) [Translation, ribosomal structure and biogenesis]
Probab=41.90 E-value=1.1e+02 Score=21.00 Aligned_cols=65 Identities=12% Similarity=0.157 Sum_probs=45.8
Q ss_pred HHHHHHHHHHcCCccEEEecCCCHHHHHHHHHhCCCCceEeccccCcccccHHHHHHHHhCCCeEEEecCC
Q 037019 2 LWEAMEVCQRLGLTKFIGVSNFSSKKIEALLAFSTIPPSVNQVEMNPAWQQRQLREFCKSKSIIVNVFSPL 72 (175)
Q Consensus 2 ~~~~l~~l~~~GkIr~iGvS~~~~~~i~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~gi~vi~~~~l 72 (175)
+++.+....+.|+|+ ....+..+.++....++.++--..++..--.-+...|++++|+++-..+-
T Consensus 15 ~l~~l~~a~~~~ki~------~G~~e~~Kai~~g~a~LVviA~Dv~P~~~~~~l~~lc~~~~vpyv~V~sk 79 (116)
T COG1358 15 ALSLLGKASRAGKLK------KGTNEVTKAIERGKAKLVVIAEDVSPEELVKHLPALCEEKNVPYVYVGSK 79 (116)
T ss_pred HHHHHHHHHhcCCch------hhHHHHHHHHHcCCCcEEEEecCCCHHHHHHHHHHHHHhcCCCEEEeCCH
Confidence 345666677777654 24666777777766777777777666555577999999999998875443
No 81
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=41.52 E-value=96 Score=23.96 Aligned_cols=59 Identities=7% Similarity=0.114 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHcCCcc----EEEecC-CCHHHHHHHHHhCCCCceEeccccCccccc--HHHHHHHHhCCCeEEE
Q 037019 1 GLWEAMEVCQRLGLTK----FIGVSN-FSSKKIEALLAFSTIPPSVNQVEMNPAWQQ--RQLREFCKSKSIIVNV 68 (175)
Q Consensus 1 e~~~~l~~l~~~GkIr----~iGvS~-~~~~~i~~~~~~~~~~~~~~q~~~~~~~~~--~~~~~~~~~~gi~vi~ 68 (175)
.+.+.+++++++-+-+ .+|+.+ .++++++.+++..-- -+..+. ++++++|+++|+.++.
T Consensus 52 ~a~~~i~~l~~~~~~~~p~~~vGaGTVl~~e~a~~a~~aGA~---------FiVsP~~~~~v~~~~~~~~i~~iP 117 (222)
T PRK07114 52 FAHEVFAELVKYAAKELPGMILGVGSIVDAATAALYIQLGAN---------FIVTPLFNPDIAKVCNRRKVPYSP 117 (222)
T ss_pred cHHHHHHHHHHHHHhhCCCeEEeeEeCcCHHHHHHHHHcCCC---------EEECCCCCHHHHHHHHHcCCCEeC
No 82
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=41.23 E-value=1.8e+02 Score=22.92 Aligned_cols=62 Identities=15% Similarity=0.096 Sum_probs=43.7
Q ss_pred HHHHHHHcCCccEEEecCCCHHHHHHHHHhCCCCceEeccccCcccccHHHHHHHHhCCCeEEEecC
Q 037019 5 AMEVCQRLGLTKFIGVSNFSSKKIEALLAFSTIPPSVNQVEMNPAWQQRQLREFCKSKSIIVNVFSP 71 (175)
Q Consensus 5 ~l~~l~~~GkIr~iGvS~~~~~~i~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~gi~vi~~~~ 71 (175)
.+..+++.-.+. +.|-+++++.++++++.. ...+|-+ +....+..+++.++++|+.++.+..
T Consensus 67 ~v~~i~~~~~~p-lSIDT~~~~v~e~al~~G--~~iINdi--sg~~~~~~~~~l~~~~~~~vV~m~~ 128 (257)
T cd00739 67 VLEALRGELDVL-ISVDTFRAEVARAALEAG--ADIINDV--SGGSDDPAMLEVAAEYGAPLVLMHM 128 (257)
T ss_pred HHHHHHhcCCCc-EEEeCCCHHHHHHHHHhC--CCEEEeC--CCCCCChHHHHHHHHcCCCEEEECC
Confidence 455566553444 889999999999999864 2334434 3333337899999999999999654
No 83
>PLN02591 tryptophan synthase
Probab=41.13 E-value=1.8e+02 Score=22.91 Aligned_cols=72 Identities=21% Similarity=0.140 Sum_probs=40.9
Q ss_pred cHHHHHHHHhCCCeEEEecCCCCCCCCCCCccccChHHHHHHHHHh----------CC-------CH-HHHHHHHHHhCC
Q 037019 52 QRQLREFCKSKSIIVNVFSPLGAVGSCWGTNQVMNNEALKQIADAH----------GE-------TV-AQVCLRWIIEQG 113 (175)
Q Consensus 52 ~~~~~~~~~~~gi~vi~~~~l~~~G~l~~~~~~~~~~~l~~~a~~~----------g~-------~~-~q~al~~~l~~~ 113 (175)
..++.+.|+++|+..|...+-.. ..++++.+++.- |+ .. .+-.++-+.++.
T Consensus 120 ~~~~~~~~~~~gl~~I~lv~Ptt-----------~~~ri~~ia~~~~gFIY~Vs~~GvTG~~~~~~~~~~~~i~~vk~~~ 188 (250)
T PLN02591 120 TEALRAEAAKNGIELVLLTTPTT-----------PTERMKAIAEASEGFVYLVSSTGVTGARASVSGRVESLLQELKEVT 188 (250)
T ss_pred HHHHHHHHHHcCCeEEEEeCCCC-----------CHHHHHHHHHhCCCcEEEeeCCCCcCCCcCCchhHHHHHHHHHhcC
Confidence 36788899999988888774433 123344443321 10 01 122233344332
Q ss_pred ---cEEEecCCCHHHHHHhhcc-cC
Q 037019 114 ---AIVIAKSFNKERLKENLDI-FD 134 (175)
Q Consensus 114 ---~~~i~G~~~~~~l~enl~a-~~ 134 (175)
..+=+|.++++|+++.++. .+
T Consensus 189 ~~Pv~vGFGI~~~e~v~~~~~~GAD 213 (250)
T PLN02591 189 DKPVAVGFGISKPEHAKQIAGWGAD 213 (250)
T ss_pred CCceEEeCCCCCHHHHHHHHhcCCC
Confidence 5556688888888887776 44
No 84
>TIGR03821 AblA_like_1 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in E. coli, Buchnera, Yersinia, etc.
Probab=41.03 E-value=2e+02 Score=23.44 Aligned_cols=70 Identities=19% Similarity=0.104 Sum_probs=41.7
Q ss_pred HHHHHHHHcCCccEEEecC----CCHHHHH----HHHHhCCCCceEeccccCccc---c-cHHHHHHHHhCCCeEEEecC
Q 037019 4 EAMEVCQRLGLTKFIGVSN----FSSKKIE----ALLAFSTIPPSVNQVEMNPAW---Q-QRQLREFCKSKSIIVNVFSP 71 (175)
Q Consensus 4 ~~l~~l~~~GkIr~iGvS~----~~~~~i~----~~~~~~~~~~~~~q~~~~~~~---~-~~~~~~~~~~~gi~vi~~~~ 71 (175)
+.++.+..-..++.+|+.+ ..+..+. +.++..+. ..+.++.+|-.. . ..+.++.+++.|+.+...++
T Consensus 163 ~ll~~l~~i~~~~~iri~tr~~~~~p~rit~el~~~L~~~~~-~~~~~~h~dh~~Ei~d~~~~ai~~L~~~Gi~v~~qtv 241 (321)
T TIGR03821 163 WLLNLLEQIPHLKRLRIHTRLPVVIPDRITSGLCDLLANSRL-QTVLVVHINHANEIDAEVADALAKLRNAGITLLNQSV 241 (321)
T ss_pred HHHHHHHhCCCCcEEEEecCcceeeHHHhhHHHHHHHHhcCC-cEEEEeeCCChHhCcHHHHHHHHHHHHcCCEEEecce
Confidence 4556666667888888764 3333332 22333332 223344555221 1 15688888999999999999
Q ss_pred CCC
Q 037019 72 LGA 74 (175)
Q Consensus 72 l~~ 74 (175)
+..
T Consensus 242 llk 244 (321)
T TIGR03821 242 LLR 244 (321)
T ss_pred eeC
Confidence 987
No 85
>PRK14017 galactonate dehydratase; Provisional
Probab=41.00 E-value=1.2e+02 Score=25.23 Aligned_cols=67 Identities=15% Similarity=0.137 Sum_probs=50.8
Q ss_pred HHHHHHHHHcCCcc-EEEecCCCHHHHHHHHHhCCCCceEeccccCccc---ccHHHHHHHHhCCCeEEEecC
Q 037019 3 WEAMEVCQRLGLTK-FIGVSNFSSKKIEALLAFSTIPPSVNQVEMNPAW---QQRQLREFCKSKSIIVNVFSP 71 (175)
Q Consensus 3 ~~~l~~l~~~GkIr-~iGvS~~~~~~i~~~~~~~~~~~~~~q~~~~~~~---~~~~~~~~~~~~gi~vi~~~~ 71 (175)
++.+.+|+++..+. ..|=|-++...+..+++.. -++++|...+.+- ....+.++|+++||.++....
T Consensus 217 ~~~~~~L~~~~~~pIa~dEs~~~~~~~~~li~~~--a~d~v~~d~~~~GGit~~~~ia~~A~~~gi~~~~h~~ 287 (382)
T PRK14017 217 AEALPEIAAQTSIPIATGERLFSRWDFKRVLEAG--GVDIIQPDLSHAGGITECRKIAAMAEAYDVALAPHCP 287 (382)
T ss_pred HHHHHHHHhcCCCCEEeCCccCCHHHHHHHHHcC--CCCeEecCccccCCHHHHHHHHHHHHHcCCeEeecCC
Confidence 56788888887666 5566678999999888765 3577888766543 237899999999999888654
No 86
>TIGR01502 B_methylAsp_ase methylaspartate ammonia-lyase. This model describes methylaspartate ammonia-lyase, also called beta-methylaspartase (EC 4.3.1.2). It follows methylaspartate mutase (composed of S and E subunits) in one of several possible pathways of glutamate fermentation.
Probab=40.74 E-value=2.2e+02 Score=24.19 Aligned_cols=68 Identities=10% Similarity=-0.008 Sum_probs=48.9
Q ss_pred HHHHHHHHHc------CCccEEEecCCCHHHHHHHHHhCCCCceEeccccCcccc---cHHHHHHHHhCCCeEEEecCC
Q 037019 3 WEAMEVCQRL------GLTKFIGVSNFSSKKIEALLAFSTIPPSVNQVEMNPAWQ---QRQLREFCKSKSIIVNVFSPL 72 (175)
Q Consensus 3 ~~~l~~l~~~------GkIr~iGvS~~~~~~i~~~~~~~~~~~~~~q~~~~~~~~---~~~~~~~~~~~gi~vi~~~~l 72 (175)
++.|.+|+++ +.=-..+=|-++++.+.++++.. -.+++|+..+-+-. ...+.++|+.+||.++.....
T Consensus 281 ~e~la~Lr~~~~~~~~~vPI~aDEs~~t~~d~~~~i~~~--a~d~v~iK~~k~GGIt~a~kia~lA~~~Gi~~~~g~~~ 357 (408)
T TIGR01502 281 IEAMADLRAELDGRGVDAEIVADEWCNTVEDVKFFTDAK--AGHMVQIKTPDVGGVNNIARAIMYCKANGMGAYVGGTC 357 (408)
T ss_pred HHHHHHHHHHhhcCCCCceEEecCCCCCHHHHHHHHHhC--CCCEEEeCccccCCHHHHHHHHHHHHHcCCEEEEeCCC
Confidence 6677777766 33444556667899998888764 35777777765432 378999999999999987655
No 87
>TIGR01212 radical SAM protein, TIGR01212 family. This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain.
Probab=40.32 E-value=59 Score=26.15 Aligned_cols=59 Identities=12% Similarity=0.053 Sum_probs=33.8
Q ss_pred HHHHHHHHHcCC-c-cEEEecCCCHHHHHHHHHhCCCCceEeccccCcccccHHHHHHHHhCCCeEEEecCCC
Q 037019 3 WEAMEVCQRLGL-T-KFIGVSNFSSKKIEALLAFSTIPPSVNQVEMNPAWQQRQLREFCKSKSIIVNVFSPLG 73 (175)
Q Consensus 3 ~~~l~~l~~~Gk-I-r~iGvS~~~~~~i~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~gi~vi~~~~l~ 73 (175)
++.|.++++.|. + -++|+-+.+.+.+..+.+... ...-.+.+..++++|+.+.+..-++
T Consensus 126 l~~L~~l~~~G~~~~i~lGlQS~~d~~L~~i~Rg~t------------~~~~~~ai~~l~~~gi~v~~~lI~G 186 (302)
T TIGR01212 126 LDLLAEYVERGYEVWVELGLQTAHDKTLKKINRGHD------------FACYVDAVKRARKRGIKVCSHVILG 186 (302)
T ss_pred HHHHHHhhhCCceEEEEEccCcCCHHHHHHHcCcCh------------HHHHHHHHHHHHHcCCEEEEeEEEC
Confidence 455555666666 4 456776666666655433210 0111457777788888877655554
No 88
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=40.02 E-value=2.1e+02 Score=23.48 Aligned_cols=60 Identities=13% Similarity=0.119 Sum_probs=42.3
Q ss_pred HcCCccEEEecCCCHHHHHHHHHhC-----CCCceEeccccCcccccHHHHHHHHhCCCeEEEec
Q 037019 11 RLGLTKFIGVSNFSSKKIEALLAFS-----TIPPSVNQVEMNPAWQQRQLREFCKSKSIIVNVFS 70 (175)
Q Consensus 11 ~~GkIr~iGvS~~~~~~i~~~~~~~-----~~~~~~~q~~~~~~~~~~~~~~~~~~~gi~vi~~~ 70 (175)
+.|=+..||....+++++++.++.. +.+|-++-+.+.......+.++.+.+.++.++..+
T Consensus 25 ~AGgLG~la~~~~~~e~l~~~i~~~~~l~tdkPfGVnl~~~~~~~~~~~~l~vi~e~~v~~V~~~ 89 (320)
T cd04743 25 EGGGLPFIALALMRGEQVKALLEETAELLGDKPWGVGILGFVDTELRAAQLAVVRAIKPTFALIA 89 (320)
T ss_pred hCCccccCCCCCCCHHHHHHHHHHHHHhccCCCeEEEEeccCCCcchHHHHHHHHhcCCcEEEEc
Confidence 5577788898889999887665322 34666666544322223679999999999998865
No 89
>COG0773 MurC UDP-N-acetylmuramate-alanine ligase [Cell envelope biogenesis, outer membrane]
Probab=39.78 E-value=6.5 Score=33.70 Aligned_cols=64 Identities=16% Similarity=0.156 Sum_probs=44.2
Q ss_pred cccccHHHHHHHHhCCCeEEEecCCCCCCCCCCCccccChHHHHHHHHHhCCCHHHHHHHHHHhCC---cEEEec
Q 037019 48 PAWQQRQLREFCKSKSIIVNVFSPLGAVGSCWGTNQVMNNEALKQIADAHGETVAQVCLRWIIEQG---AIVIAK 119 (175)
Q Consensus 48 ~~~~~~~~~~~~~~~gi~vi~~~~l~~~G~l~~~~~~~~~~~l~~~a~~~g~~~~q~al~~~l~~~---~~~i~G 119 (175)
.+..++.-+.+++++||+++.+.-+.+ -++ +...--.++-.||.|.+.-.++|++... .+.++|
T Consensus 75 Ai~~~NpEi~~A~e~~ipi~~r~e~La-elm-------~~~~~iaVaGTHGKTTTTsmla~vl~~~gldPtf~iG 141 (459)
T COG0773 75 AIKEDNPEIVAALERGIPVISRAEMLA-ELM-------RFRTSIAVAGTHGKTTTTSMLAWVLEAAGLDPTFLIG 141 (459)
T ss_pred ccCCCCHHHHHHHHcCCCeEcHHHHHH-HHH-------hCCeeEEEeCCCCchhHHHHHHHHHHhCCCCCEEEEC
Confidence 334557788999999999998766554 111 1122223455679999999999999975 666666
No 90
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=39.62 E-value=1.9e+02 Score=22.94 Aligned_cols=62 Identities=15% Similarity=0.013 Sum_probs=37.6
Q ss_pred HHHHHHHHHcCCccEEEecCCCHHHHHHHHHhCCCCceEeccccCccccc--HHHHHHHHhC--CCeEEEe
Q 037019 3 WEAMEVCQRLGLTKFIGVSNFSSKKIEALLAFSTIPPSVNQVEMNPAWQQ--RQLREFCKSK--SIIVNVF 69 (175)
Q Consensus 3 ~~~l~~l~~~GkIr~iGvS~~~~~~i~~~~~~~~~~~~~~q~~~~~~~~~--~~~~~~~~~~--gi~vi~~ 69 (175)
-++++++++...=+.||++.++.+++.++.+. ..+.+++. .++.. .++.+.+++. .+.+++-
T Consensus 171 ~~av~~~R~~~~~~~IgVev~t~eea~~A~~~---gaD~I~ld--~~~p~~l~~~~~~~~~~~~~i~i~As 236 (272)
T cd01573 171 LKALARLRATAPEKKIVVEVDSLEEALAAAEA---GADILQLD--KFSPEELAELVPKLRSLAPPVLLAAA 236 (272)
T ss_pred HHHHHHHHHhCCCCeEEEEcCCHHHHHHHHHc---CCCEEEEC--CCCHHHHHHHHHHHhccCCCceEEEE
Confidence 35666777653334699999999998888753 34566654 22222 4555555543 4555553
No 91
>TIGR01210 conserved hypothetical protein TIGR01210. This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes.
Probab=39.46 E-value=1.5e+02 Score=23.99 Aligned_cols=22 Identities=9% Similarity=0.084 Sum_probs=17.4
Q ss_pred HHHHHHHHhCCCeEEEecCCCC
Q 037019 53 RQLREFCKSKSIIVNVFSPLGA 74 (175)
Q Consensus 53 ~~~~~~~~~~gi~vi~~~~l~~ 74 (175)
...+..++++|+.+.++--++.
T Consensus 158 ~~ai~~~~~~Gi~v~~~~i~G~ 179 (313)
T TIGR01210 158 IRAAELARKYGAGVKAYLLFKP 179 (313)
T ss_pred HHHHHHHHHcCCcEEEEEEecC
Confidence 4678888899999888777754
No 92
>cd08606 GDPD_YPL110cp_fungi Glycerophosphodiester phosphodiesterase domain of Saccharomyces cerevisiae YPL110cp and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Saccharomyces cerevisiae YPL110cp and other uncharacterized fungal homologs. The product of S. cerevisiae ORF YPL110c (GDE1), YPL110cp (Gde1p), displays homology to bacterial and mammalian glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46), which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. S. cerevisiae YPL110cp has been characterized as a cytoplasmic glycerophosphocholine (GPC)-specific phosphodiesterase that selectively hydrolyzes GPC, not glycerophosphoinositol (GPI), to generate choline and glycerolphosphate. YPL110cp has multi-domain architecture, including not only C-terminal GDPD, but also an SPX N-terminal domain along with several ankyrin repeats, which imp
Probab=39.21 E-value=1.8e+02 Score=22.89 Aligned_cols=32 Identities=19% Similarity=0.091 Sum_probs=24.2
Q ss_pred HHHHHHHcCCccEEEecCCCHHHHHHHHHhCC
Q 037019 5 AMEVCQRLGLTKFIGVSNFSSKKIEALLAFST 36 (175)
Q Consensus 5 ~l~~l~~~GkIr~iGvS~~~~~~i~~~~~~~~ 36 (175)
.++.+++.|.-+.+=+|+|+++.+..+.....
T Consensus 155 v~~~i~~~~~~~~vi~sSF~~~~l~~~~~~~p 186 (286)
T cd08606 155 VLEKVFDYGAGRNIIFSSFTPDICILLSLKQP 186 (286)
T ss_pred HHHHHHhcCCCCceEEEcCCHHHHHHHHhhCc
Confidence 35556666877889999999999887766543
No 93
>cd03327 MR_like_2 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 2. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=39.09 E-value=1.5e+02 Score=24.08 Aligned_cols=64 Identities=11% Similarity=0.066 Sum_probs=40.0
Q ss_pred HHHHHHHHHcCCcc-EEEecCCCHHHHHHHHHhCCCCceEeccccCccc---ccHHHHHHHHhCCCeEEE
Q 037019 3 WEAMEVCQRLGLTK-FIGVSNFSSKKIEALLAFSTIPPSVNQVEMNPAW---QQRQLREFCKSKSIIVNV 68 (175)
Q Consensus 3 ~~~l~~l~~~GkIr-~iGvS~~~~~~i~~~~~~~~~~~~~~q~~~~~~~---~~~~~~~~~~~~gi~vi~ 68 (175)
++.+.+++++..|. ..|=|-++...+..+++.. ..+++|....-+- ....+.++|+++|+.++.
T Consensus 211 ~~~~~~l~~~~~~pIa~gE~~~~~~~~~~~i~~~--a~d~i~~d~~~~GGit~~~~i~~~A~~~g~~~~~ 278 (341)
T cd03327 211 IEGYAELKKATGIPISTGEHEYTVYGFKRLLEGR--AVDILQPDVNWVGGITELKKIAALAEAYGVPVVP 278 (341)
T ss_pred HHHHHHHHhcCCCCeEeccCccCHHHHHHHHHcC--CCCEEecCccccCCHHHHHHHHHHHHHcCCeecc
Confidence 45667777776655 5555556777777776643 3566666555432 225677777777777654
No 94
>PRK08247 cystathionine gamma-synthase; Reviewed
Probab=39.04 E-value=2.2e+02 Score=23.37 Aligned_cols=59 Identities=19% Similarity=0.232 Sum_probs=40.2
Q ss_pred ccEEEecCCCHHHHHHHHHhCCCCceEeccccCccccc---HHHHHHHHhCCCeEEEecCCCC
Q 037019 15 TKFIGVSNFSSKKIEALLAFSTIPPSVNQVEMNPAWQQ---RQLREFCKSKSIIVNVFSPLGA 74 (175)
Q Consensus 15 Ir~iGvS~~~~~~i~~~~~~~~~~~~~~q~~~~~~~~~---~~~~~~~~~~gi~vi~~~~l~~ 74 (175)
++..-+...+++.+++.+.. +.+..++..+-|+.... ..+.+.|+++|+.++.=...+.
T Consensus 116 ~~v~~vd~~d~~~l~~~i~~-~tklv~le~P~NP~~~~~dl~~I~~la~~~g~~lIvD~t~~~ 177 (366)
T PRK08247 116 VRFVYVNTASLKAIEQAITP-NTKAIFIETPTNPLMQETDIAAIAKIAKKHGLLLIVDNTFYT 177 (366)
T ss_pred ceEEEECCCCHHHHHHhccc-CceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCCcc
Confidence 44445555577777776643 34566666677775432 6799999999999988777654
No 95
>PF11242 DUF2774: Protein of unknown function (DUF2774); InterPro: IPR021404 This entry is represented by Bacteriophage T4, Gp24.3; it is a family of uncharacterised viral proteins.
Probab=38.99 E-value=51 Score=20.08 Aligned_cols=22 Identities=27% Similarity=0.354 Sum_probs=19.2
Q ss_pred HHHHHHHhCCCHHHHHHHHHHh
Q 037019 90 LKQIADAHGETVAQVCLRWIIE 111 (175)
Q Consensus 90 l~~~a~~~g~~~~q~al~~~l~ 111 (175)
..+||+++|.++...+..|+.-
T Consensus 16 FveIAr~~~i~a~e~a~~w~~V 37 (63)
T PF11242_consen 16 FVEIARKIGITAKEVAKAWAEV 37 (63)
T ss_pred HHHHHHHhCCCHHHHHHHHHHH
Confidence 5689999999999999999754
No 96
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=38.54 E-value=2e+02 Score=22.78 Aligned_cols=70 Identities=7% Similarity=-0.007 Sum_probs=35.1
Q ss_pred HHHHHHHHHHcCCccEEEecCCCH------HHHHHHHHhCCCCceEeccccCcccccHHHHHHHHhCCCeEEEecCCC
Q 037019 2 LWEAMEVCQRLGLTKFIGVSNFSS------KKIEALLAFSTIPPSVNQVEMNPAWQQRQLREFCKSKSIIVNVFSPLG 73 (175)
Q Consensus 2 ~~~~l~~l~~~GkIr~iGvS~~~~------~~i~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~gi~vi~~~~l~ 73 (175)
+++.+.+++++-.+.-+=++-+++ +.+.+-+..++ .+-+-++--++....++++.|+++|+.++...+..
T Consensus 79 ~~~~~~~~r~~~~~p~vlm~Y~N~i~~~G~e~F~~~~~~aG--vdgviipDLP~ee~~~~~~~~~~~gi~~I~lv~Pt 154 (263)
T CHL00200 79 ILSILSEVNGEIKAPIVIFTYYNPVLHYGINKFIKKISQAG--VKGLIIPDLPYEESDYLISVCNLYNIELILLIAPT 154 (263)
T ss_pred HHHHHHHHhcCCCCCEEEEecccHHHHhCHHHHHHHHHHcC--CeEEEecCCCHHHHHHHHHHHHHcCCCEEEEECCC
Confidence 355555555443344343444332 33333333332 23333333333334678888888888777665554
No 97
>cd08568 GDPD_TmGDE_like Glycerophosphodiester phosphodiesterase domain of Thermotoga maritime and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Thermotoga maritime glycerophosphodiester phosphodiesterase (TmGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. TmGDE exists as a monomer that might be the biologically relevant form.
Probab=38.54 E-value=1.7e+02 Score=22.07 Aligned_cols=31 Identities=13% Similarity=0.301 Sum_probs=22.6
Q ss_pred HHHHHHcCCccEEEecCCCHHHHHHHHHhCC
Q 037019 6 MEVCQRLGLTKFIGVSNFSSKKIEALLAFST 36 (175)
Q Consensus 6 l~~l~~~GkIr~iGvS~~~~~~i~~~~~~~~ 36 (175)
++.+++.|....+=+++|+.+.+..+.+..+
T Consensus 109 ~~~l~~~~~~~~v~i~SF~~~~l~~~~~~~p 139 (226)
T cd08568 109 LEIVEKFNALDRVIFSSFNHDALRELRKLDP 139 (226)
T ss_pred HHHHHHcCCCCcEEEEECCHHHHHHHHHhCC
Confidence 4445556777788899999988888876543
No 98
>PRK13602 putative ribosomal protein L7Ae-like; Provisional
Probab=38.52 E-value=1.1e+02 Score=19.59 Aligned_cols=58 Identities=12% Similarity=0.152 Sum_probs=39.2
Q ss_pred HHHHHHcCCccEEEecCCCHHHHHHHHHhCCCCceEeccccCcccccHHHHHHHHhCCCeEEEec
Q 037019 6 MEVCQRLGLTKFIGVSNFSSKKIEALLAFSTIPPSVNQVEMNPAWQQRQLREFCKSKSIIVNVFS 70 (175)
Q Consensus 6 l~~l~~~GkIr~iGvS~~~~~~i~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~gi~vi~~~ 70 (175)
++++++.||+. ....+..+.++....+..++--+.+. .....+..+|+.++|.++-+.
T Consensus 3 ~~~~~ragkl~------~G~~~v~kai~~gkaklViiA~D~~~-~~~~~i~~~c~~~~Vp~~~~~ 60 (82)
T PRK13602 3 YEKVSQAKSIV------IGTKQTVKALKRGSVKEVVVAEDADP-RLTEKVEALANEKGVPVSKVD 60 (82)
T ss_pred hHHHHhcCCEE------EcHHHHHHHHHcCCeeEEEEECCCCH-HHHHHHHHHHHHcCCCEEEEC
Confidence 56777777642 23566666776666666666665554 234679999999999998765
No 99
>cd03323 D-glucarate_dehydratase D-Glucarate dehydratase (GlucD) catalyzes the dehydration of both D-glucarate and L-idarate to form 5-keto-4-deoxy-D-glucarate (5-KDG) , the initial reaction of the catabolic pathway for (D)-glucarate. GlucD belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=38.47 E-value=1.8e+02 Score=24.40 Aligned_cols=68 Identities=7% Similarity=0.010 Sum_probs=48.7
Q ss_pred HHHHHHHHHcCCcc-EEEecCCCHHHHHHHHHhCCCCceEeccccCccc---ccHHHHHHHHhCCCeEEEecCC
Q 037019 3 WEAMEVCQRLGLTK-FIGVSNFSSKKIEALLAFSTIPPSVNQVEMNPAW---QQRQLREFCKSKSIIVNVFSPL 72 (175)
Q Consensus 3 ~~~l~~l~~~GkIr-~iGvS~~~~~~i~~~~~~~~~~~~~~q~~~~~~~---~~~~~~~~~~~~gi~vi~~~~l 72 (175)
++.|.+|+++..+. ..|=|-++...+..+++.. -.+++|......- ....+.++|+++|+.++..+..
T Consensus 250 ~~~~~~L~~~~~~PIa~dEs~~~~~~~~~~i~~~--avdil~~d~~~~GGit~~~kia~~A~~~gi~~~~h~~~ 321 (395)
T cd03323 250 REGMAEFRRATGLPLATNMIVTDFRQLGHAIQLN--AVDIPLADHHFWGGMRGSVRVAQVCETWGLGWGMHSNN 321 (395)
T ss_pred HHHHHHHHHhcCCCEEcCCcccCHHHHHHHHHcC--CCcEEeeccccccCHHHHHHHHHHHHHcCCeEEEecCc
Confidence 46677888876665 6666667888888887754 3577777665432 2368999999999999886654
No 100
>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]
Probab=38.31 E-value=91 Score=26.23 Aligned_cols=49 Identities=14% Similarity=0.104 Sum_probs=31.4
Q ss_pred CHHHHHHHHHhCCCCceEeccccCccccc------HHHHHHHHhCCCeEEEecCC
Q 037019 24 SSKKIEALLAFSTIPPSVNQVEMNPAWQQ------RQLREFCKSKSIIVNVFSPL 72 (175)
Q Consensus 24 ~~~~i~~~~~~~~~~~~~~q~~~~~~~~~------~~~~~~~~~~gi~vi~~~~l 72 (175)
+-+.+++.+....++.-+.=.+-|+.-+- ..+.+.|.+|||.||+-.--
T Consensus 146 D~~~LE~~~~~~~vkl~iLCnPHNP~Grvwt~eeL~~i~elc~kh~v~VISDEIH 200 (388)
T COG1168 146 DFDALEKAFVDERVKLFILCNPHNPTGRVWTKEELRKIAELCLRHGVRVISDEIH 200 (388)
T ss_pred cHHHHHHHHhcCCccEEEEeCCCCCCCccccHHHHHHHHHHHHHcCCEEEeeccc
Confidence 56677777665554433333455555441 56899999999999975443
No 101
>TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase. This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine.
Probab=37.63 E-value=2.4e+02 Score=23.45 Aligned_cols=70 Identities=14% Similarity=0.126 Sum_probs=43.8
Q ss_pred HHHHHHHHcCCccEEEecCCCHHHHHHHHHhCCCCceEeccccCccccc---HHHHHHHHhCCCeEEEecCCCC
Q 037019 4 EAMEVCQRLGLTKFIGVSNFSSKKIEALLAFSTIPPSVNQVEMNPAWQQ---RQLREFCKSKSIIVNVFSPLGA 74 (175)
Q Consensus 4 ~~l~~l~~~GkIr~iGvS~~~~~~i~~~~~~~~~~~~~~q~~~~~~~~~---~~~~~~~~~~gi~vi~~~~l~~ 74 (175)
..+..+...+.++-.-+...+++.+++.++. +.+..++..+-|+.-.- ..+.+.|+++|+.++.=...+.
T Consensus 105 ~~~~~~~~~~~~~v~~~d~~d~~~l~~ai~~-~tklV~l~~p~NPtG~~~dl~~I~~la~~~g~~vvvD~a~~~ 177 (382)
T TIGR02080 105 RLLNALAKKGCFRVLFVDQGDEQALRAALAQ-KPKLVLIETPSNPLLRVVDIAKICHLAKAVGAVVVVDNTFLS 177 (382)
T ss_pred HHHHHHHhhcCeEEEEECCCCHHHHHHhcCc-CceEEEEECCCCCCCEecCHHHHHHHHHHcCCEEEEECCCcc
Confidence 3444555555555555555677777776643 24555555566654332 6799999999988887666654
No 102
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=37.40 E-value=2.6e+02 Score=24.02 Aligned_cols=70 Identities=6% Similarity=-0.027 Sum_probs=35.5
Q ss_pred HHHHHHHHHcCCccE-----EEecCCCHHH---------HHHHHHhCCCCceEeccccCccccc-HHHHHHHHhCCCeEE
Q 037019 3 WEAMEVCQRLGLTKF-----IGVSNFSSKK---------IEALLAFSTIPPSVNQVEMNPAWQQ-RQLREFCKSKSIIVN 67 (175)
Q Consensus 3 ~~~l~~l~~~GkIr~-----iGvS~~~~~~---------i~~~~~~~~~~~~~~q~~~~~~~~~-~~~~~~~~~~gi~vi 67 (175)
+++|.+|.++|+|.. +|..+..... |-+-+...+++-++.=-..-.++|. .-+.....+.||.++
T Consensus 289 lD~LreLe~EG~IG~l~~~fy~t~G~gt~~~~a~~~g~eIa~~Lk~dgVDAvILtstCgtCtrcga~m~keiE~~GIPvV 368 (431)
T TIGR01917 289 VDVLRDLEKEGKIGELFKYFYSTTGNGTAVANSKQFAKEFSKELLAAGVDAVILTSTUGTCTRCGATMVKEIERAGIPVV 368 (431)
T ss_pred HHHHHHHHHcCCcccccCeeEEccCCCccHHHHHHHHHHHHHHHHHcCCCEEEEcCCCCcchhHHHHHHHHHHHcCCCEE
Confidence 578999999999964 4544432111 1122222223222221133344444 345666666777776
Q ss_pred EecCC
Q 037019 68 VFSPL 72 (175)
Q Consensus 68 ~~~~l 72 (175)
-+..+
T Consensus 369 ~i~~~ 373 (431)
T TIGR01917 369 HICTV 373 (431)
T ss_pred EEeec
Confidence 65444
No 103
>TIGR01660 narH nitrate reductase, beta subunit. The Nitrate reductase enzyme complex allows bacteria to use nitrate as an electron acceptor during anaerobic growth. The enzyme complex consists of a tetramer that has an alpha, beta and 2 gamma subunits. The alpha and beta subunits have catalytic activity and the gamma subunits attach the enzyme to the membrane and is a b-type cytochrome that receives electrons from the quinone pool and transfers them to the beta subunit. This model is specific for the beta subunit for nitrate reductase I (narH) and nitrate reductase II (narY) for gram positive and gram negative bacteria.A few thermophiles and archaea also match the model.The seed members used in this model are all experimentally characterized and include the following: NarH and NarY, both E.Coli, sequences from B. Subtilis, Pseudomonas fluorescens, Paracoccus denitrificans, and Halomonas halodenitrificans. This model also matches PFAM pfam00037 for 4Fe-4S binding domain.
Probab=37.35 E-value=21 Score=30.82 Aligned_cols=50 Identities=14% Similarity=0.250 Sum_probs=30.5
Q ss_pred CCccEEEecCCCHHHHHHHHHhCCCCceEeccccCcccc--cHHHHHHHHhCC
Q 037019 13 GLTKFIGVSNFSSKKIEALLAFSTIPPSVNQVEMNPAWQ--QRQLREFCKSKS 63 (175)
Q Consensus 13 GkIr~iGvS~~~~~~i~~~~~~~~~~~~~~q~~~~~~~~--~~~~~~~~~~~g 63 (175)
|++|++|+..++.+.+.++...... -+.++.+..+|-. ++++++.+++.|
T Consensus 264 ~~Ar~fG~ll~d~d~i~eaa~~~~~-~~~y~~~~~~~ldp~dp~v~~~A~~~g 315 (492)
T TIGR01660 264 GRIRYLGVLLYDADKIEEAASTENE-KDLYHRQLDVFLDPNDPEVIAQAKKDG 315 (492)
T ss_pred hhhhhhhhhccCcHHHHHHHhcccc-hhHHHHhhceecCCCCHHHHHHHHHcC
Confidence 6789999999999999888765541 2344444443322 344444444444
No 104
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=37.28 E-value=2.2e+02 Score=24.46 Aligned_cols=69 Identities=14% Similarity=0.128 Sum_probs=37.8
Q ss_pred HHHHHHHHHHc-CCccE---------EEecCCCHHHHHHHHHhC-CCCceEeccccCccccc--HHHHHHHHhCCCeEEE
Q 037019 2 LWEAMEVCQRL-GLTKF---------IGVSNFSSKKIEALLAFS-TIPPSVNQVEMNPAWQQ--RQLREFCKSKSIIVNV 68 (175)
Q Consensus 2 ~~~~l~~l~~~-GkIr~---------iGvS~~~~~~i~~~~~~~-~~~~~~~q~~~~~~~~~--~~~~~~~~~~gi~vi~ 68 (175)
.|+.++.+++. ..++. .|.++++.+.+++.++.+ ...++++.+-.++.+.+ ...+++++++|..+.+
T Consensus 62 p~e~l~~l~~~~~~~~l~~l~r~~N~~G~~~~pddvv~~~v~~A~~~Gvd~irif~~lnd~~n~~~~v~~ak~~G~~v~~ 141 (448)
T PRK12331 62 PWERLRKIRKAVKKTKLQMLLRGQNLLGYRNYADDVVESFVQKSVENGIDIIRIFDALNDVRNLETAVKATKKAGGHAQV 141 (448)
T ss_pred HHHHHHHHHHhCCCCEEEEEeccccccccccCchhhHHHHHHHHHHCCCCEEEEEEecCcHHHHHHHHHHHHHcCCeEEE
Confidence 47788888776 33443 466666555554443221 11234444433333332 5688889999876654
Q ss_pred ec
Q 037019 69 FS 70 (175)
Q Consensus 69 ~~ 70 (175)
..
T Consensus 142 ~i 143 (448)
T PRK12331 142 AI 143 (448)
T ss_pred EE
Confidence 33
No 105
>COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]
Probab=36.83 E-value=1.1e+02 Score=25.91 Aligned_cols=74 Identities=18% Similarity=0.217 Sum_probs=49.7
Q ss_pred HHHHHHHHHHcC-CccEEEecCC---CHHHHHHHHHhCCCCceEecc---ccCcccccHHHHHHHHhCCCeEEEecCCCC
Q 037019 2 LWEAMEVCQRLG-LTKFIGVSNF---SSKKIEALLAFSTIPPSVNQV---EMNPAWQQRQLREFCKSKSIIVNVFSPLGA 74 (175)
Q Consensus 2 ~~~~l~~l~~~G-kIr~iGvS~~---~~~~i~~~~~~~~~~~~~~q~---~~~~~~~~~~~~~~~~~~gi~vi~~~~l~~ 74 (175)
+++.+..|.++| .|.|+.+... ++++++++++... .++.++. +.-...+=.++-+.|+++|+.+..-.+-+-
T Consensus 104 Vl~~~~~Le~~g~~Vtyl~V~~~G~v~~e~L~~al~~~T-~LVSim~aNnE~G~IQpI~ei~~i~k~~~i~fHvDAvQa~ 182 (386)
T COG1104 104 VLNTCRYLERQGFEVTYLPVDSNGLVDLEQLEEALRPDT-ILVSIMHANNETGTIQPIAEIGEICKERGILFHVDAVQAV 182 (386)
T ss_pred HHHHHHHHHhcCCeEEEeCCCCCCeEcHHHHHHhcCCCc-eEEEEEecccCeeecccHHHHHHHHHHcCCeEEEehhhhc
Confidence 467888887778 8999999874 7888888876332 2222222 222222337899999999987777666555
Q ss_pred CCC
Q 037019 75 VGS 77 (175)
Q Consensus 75 ~G~ 77 (175)
|-
T Consensus 183 -Gk 184 (386)
T COG1104 183 -GK 184 (386)
T ss_pred -Cc
Confidence 54
No 106
>TIGR02534 mucon_cyclo muconate and chloromuconate cycloisomerases. This model encompasses muconate cycloisomerase (EC 5.5.1.1) and chloromuconate cycloisomerase (EC 5.5.1.7), enzymes that often overlap in specificity. It excludes more distantly related proteins such as mandelate racemase (5.1.2.2).
Probab=36.70 E-value=1.5e+02 Score=24.44 Aligned_cols=68 Identities=13% Similarity=0.020 Sum_probs=42.9
Q ss_pred HHHHHHHHHcCCcc-EEEecCCCHHHHHHHHHhCCCCceEeccccCcccc---cHHHHHHHHhCCCeEEEecCC
Q 037019 3 WEAMEVCQRLGLTK-FIGVSNFSSKKIEALLAFSTIPPSVNQVEMNPAWQ---QRQLREFCKSKSIIVNVFSPL 72 (175)
Q Consensus 3 ~~~l~~l~~~GkIr-~iGvS~~~~~~i~~~~~~~~~~~~~~q~~~~~~~~---~~~~~~~~~~~gi~vi~~~~l 72 (175)
++.+.++++...|. ..|=|-++...+..+++... .+++|+....+-. ...+...|+.+|+.++..+..
T Consensus 227 ~~~~~~l~~~~~~pia~dE~~~~~~~~~~~~~~~~--~d~~~~d~~~~GGi~~~~~i~~lA~~~gi~~~~~~~~ 298 (368)
T TIGR02534 227 REALARLTRRFNVPIMADESVTGPADALAIAKASA--ADVFALKTTKSGGLLESKKIAAIAEAAGIALYGGTML 298 (368)
T ss_pred HHHHHHHHHhCCCCEEeCcccCCHHHHHHHHHhCC--CCEEEEcccccCCHHHHHHHHHHHHHcCCceeeecch
Confidence 45667777765555 56666677777777776542 4566665554322 256778888888887665333
No 107
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=36.70 E-value=51 Score=26.49 Aligned_cols=19 Identities=16% Similarity=0.190 Sum_probs=15.8
Q ss_pred HHHHHHHHhCCCeEEEecC
Q 037019 53 RQLREFCKSKSIIVNVFSP 71 (175)
Q Consensus 53 ~~~~~~~~~~gi~vi~~~~ 71 (175)
.++++||+++||.||+---
T Consensus 75 ~elv~yA~~rgI~viPEiD 93 (303)
T cd02742 75 KDIIEYAAARGIEVIPEID 93 (303)
T ss_pred HHHHHHHHHcCCEEEEecc
Confidence 6799999999999997443
No 108
>COG1026 Predicted Zn-dependent peptidases, insulinase-like [General function prediction only]
Probab=36.66 E-value=2.6e+02 Score=26.70 Aligned_cols=75 Identities=17% Similarity=0.247 Sum_probs=45.7
Q ss_pred CCCCCCcc---ccChHHHHHHHHHhCCC--HHHHHHHHHHhCC----cEEEecCCCHHHHHH----hhcccCcccCHHHH
Q 037019 76 GSCWGTNQ---VMNNEALKQIADAHGET--VAQVCLRWIIEQG----AIVIAKSFNKERLKE----NLDIFDWALTDHDY 142 (175)
Q Consensus 76 G~l~~~~~---~~~~~~l~~~a~~~g~~--~~q~al~~~l~~~----~~~i~G~~~~~~l~e----nl~a~~~~L~~~~~ 142 (175)
|++.|..+ +.-.+.++.+-++.... -..+--+|.+.++ .+++|...-.+++++ -+......|++++.
T Consensus 406 gw~~G~dp~~~Lr~~~~~~~Lr~~le~~~~fe~LI~ky~l~N~h~~~v~~~Ps~~~~~~~ekee~e~L~~~~~~l~de~~ 485 (978)
T COG1026 406 GWLNGGDPEDSLRFLDYLQNLREKLEKGPYFEKLIRKYFLDNPHYVTVIVLPSPELEEKLEKEERELLQKRSSELTDEDL 485 (978)
T ss_pred ccccCCChhhhhhhHHHHHHHHHhhhcChHHHHHHHHHhhcCCccEEEEEecChHHHHHHHHHHHHHHHHHHhhcCHHHH
Confidence 44544433 33345556665555445 4677778999998 444455444454444 44444559999999
Q ss_pred HHHhccCC
Q 037019 143 DRINQIPQ 150 (175)
Q Consensus 143 ~~i~~~~~ 150 (175)
++|.+-..
T Consensus 486 ~ki~~~~~ 493 (978)
T COG1026 486 EKIIKDSK 493 (978)
T ss_pred HHHHHHHH
Confidence 98877654
No 109
>COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=36.55 E-value=2.2e+02 Score=22.78 Aligned_cols=66 Identities=14% Similarity=0.191 Sum_probs=42.3
Q ss_pred HHHHHHHcCCccEEEecCCCHHH-------HHHHHHhCCCCceEeccccCccccc--------HHHHHHHHhCCCeEEEe
Q 037019 5 AMEVCQRLGLTKFIGVSNFSSKK-------IEALLAFSTIPPSVNQVEMNPAWQQ--------RQLREFCKSKSIIVNVF 69 (175)
Q Consensus 5 ~l~~l~~~GkIr~iGvS~~~~~~-------i~~~~~~~~~~~~~~q~~~~~~~~~--------~~~~~~~~~~gi~vi~~ 69 (175)
.+.+..++=-=|++|+.+.++.. +++.... .-++++..++..+. ..++++|.++|+.++..
T Consensus 88 ~~a~~~~~~pdrf~~~~~v~p~~~~~a~~E~er~v~~----~gf~g~~l~p~~~~~~~~~~~~~pi~~~a~~~gvpv~ih 163 (293)
T COG2159 88 DLAALAAEYPDRFVGFARVDPRDPEAAAEELERRVRE----LGFVGVKLHPVAQGFYPDDPRLYPIYEAAEELGVPVVIH 163 (293)
T ss_pred HHHHHHhhCCcceeeeeeeCCCchHHHHHHHHHHHHh----cCceEEEecccccCCCCCChHHHHHHHHHHHcCCCEEEE
Confidence 45555555566889988876553 3333333 23444444433331 46999999999999998
Q ss_pred cCCCC
Q 037019 70 SPLGA 74 (175)
Q Consensus 70 ~~l~~ 74 (175)
.....
T Consensus 164 tG~~~ 168 (293)
T COG2159 164 TGAGP 168 (293)
T ss_pred eCCCC
Confidence 77755
No 110
>PRK08574 cystathionine gamma-synthase; Provisional
Probab=36.42 E-value=1.6e+02 Score=24.42 Aligned_cols=51 Identities=14% Similarity=0.124 Sum_probs=35.3
Q ss_pred CHHHHHHHHHhCCCCceEeccccCcccc--c-HHHHHHHHhCCCeEEEecCCCC
Q 037019 24 SSKKIEALLAFSTIPPSVNQVEMNPAWQ--Q-RQLREFCKSKSIIVNVFSPLGA 74 (175)
Q Consensus 24 ~~~~i~~~~~~~~~~~~~~q~~~~~~~~--~-~~~~~~~~~~gi~vi~~~~l~~ 74 (175)
+++.+++.+...+.+..++....|+.-. + ..+.+.|+++|+.++.=...+.
T Consensus 125 d~~~l~~~i~~~~tklV~ie~p~NPtG~v~dl~~I~~la~~~gi~livD~t~a~ 178 (385)
T PRK08574 125 STEDIIEAIKEGRTKLVFIETMTNPTLKVIDVPEVAKAAKELGAILVVDNTFAT 178 (385)
T ss_pred CHHHHHHhcCccCceEEEEECCCCCCCEecCHHHHHHHHHHcCCEEEEECCCCc
Confidence 5677777665434456666666776432 2 6799999999999988777654
No 111
>COG0108 RibB 3,4-dihydroxy-2-butanone 4-phosphate synthase [Coenzyme metabolism]
Probab=36.23 E-value=84 Score=23.98 Aligned_cols=39 Identities=21% Similarity=0.216 Sum_probs=24.3
Q ss_pred HHHhCCCCceEeccccCcccc----cHHHHHHHHhCCCeEEEe
Q 037019 31 LLAFSTIPPSVNQVEMNPAWQ----QRQLREFCKSKSIIVNVF 69 (175)
Q Consensus 31 ~~~~~~~~~~~~q~~~~~~~~----~~~~~~~~~~~gi~vi~~ 69 (175)
+.+.++.+|+.+-++.---+. .+++.+|+++||+.++..
T Consensus 149 LarlAGl~Pa~VicEi~~~dG~mar~~~~~~fa~~h~l~~iti 191 (203)
T COG0108 149 LARLAGLKPAGVICEIMNDDGTMARLPELEEFAKEHGLPVITI 191 (203)
T ss_pred HHHHcCCCCcEEEEEEeCCCccccChHHHHHHHHHcCCcEEEH
Confidence 345666677666665432222 267888888888877764
No 112
>cd08572 GDPD_GDE5_like Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE5-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian glycerophosphodiester phosphodiesterase GDE5-like proteins. GDE5 is widely expressed in mammalian tissues, with highest expression in spinal chord. Although its biological function remains unclear, mammalian GDE5 shows higher sequence homology to fungal and plant glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46) than to other bacterial and mammalian GP-GDEs. It may also hydrolyze glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=36.14 E-value=2e+02 Score=22.99 Aligned_cols=32 Identities=16% Similarity=-0.015 Sum_probs=23.4
Q ss_pred HHHHHHHcCCccEEEecCCCHHHHHHHHHhCC
Q 037019 5 AMEVCQRLGLTKFIGVSNFSSKKIEALLAFST 36 (175)
Q Consensus 5 ~l~~l~~~GkIr~iGvS~~~~~~i~~~~~~~~ 36 (175)
.++.+++.|..+.+=+++|+++.+..+....+
T Consensus 169 vl~~i~~~~~~~~vv~~SF~~~~l~~l~~~~p 200 (293)
T cd08572 169 ILAVVFEHAGGRRIIFSSFDPDICIMLRLKQN 200 (293)
T ss_pred HHHHHHHhCCCCcEEEECCCHHHHHHHHhhCc
Confidence 34555566878888899999998887765544
No 113
>KOG1602 consensus Cis-prenyltransferase [Lipid transport and metabolism]
Probab=35.52 E-value=73 Score=25.32 Aligned_cols=22 Identities=18% Similarity=0.317 Sum_probs=19.4
Q ss_pred HHHHHHHHhCCCeEEEecCCCC
Q 037019 53 RQLREFCKSKSIIVNVFSPLGA 74 (175)
Q Consensus 53 ~~~~~~~~~~gi~vi~~~~l~~ 74 (175)
.+++++|.+.||..+..-.++-
T Consensus 70 ~~ile~C~~lGI~~vT~fAFSi 91 (271)
T KOG1602|consen 70 KEILELCKELGIKEVTVFAFSI 91 (271)
T ss_pred HHHHHHHHHcCCcEEEEEEEeh
Confidence 5799999999999998888876
No 114
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=35.44 E-value=2.8e+02 Score=23.53 Aligned_cols=76 Identities=12% Similarity=0.027 Sum_probs=57.9
Q ss_pred HHHHHHHHHHcCCccEEEecCCCHHHHHHHHHhCCCCceEeccccCccccc---HHHHHHHHhCCCeEEEecCCCCCCCC
Q 037019 2 LWEAMEVCQRLGLTKFIGVSNFSSKKIEALLAFSTIPPSVNQVEMNPAWQQ---RQLREFCKSKSIIVNVFSPLGAVGSC 78 (175)
Q Consensus 2 ~~~~l~~l~~~GkIr~iGvS~~~~~~i~~~~~~~~~~~~~~q~~~~~~~~~---~~~~~~~~~~gi~vi~~~~l~~~G~l 78 (175)
++..++++.++.-|....+-.-+...+.+.+.....+..++..+=|+...- +.+.+.++++|+.++.-..++. +++
T Consensus 115 t~~~~~~~l~~~gi~~~~~d~~~~~~~~~~~~~~~tk~v~lEtPsNP~l~v~DI~~i~~~A~~~g~~vvVDNTfat-P~~ 193 (396)
T COG0626 115 TYRLFEKILQKFGVEVTFVDPGDDEALEAAIKEPNTKLVFLETPSNPLLEVPDIPAIARLAKAYGALVVVDNTFAT-PVL 193 (396)
T ss_pred HHHHHHHHHHhcCeEEEEECCCChHHHHHHhcccCceEEEEeCCCCcccccccHHHHHHHHHhcCCEEEEECCccc-ccc
Confidence 456677777777777777777777666655543346788889999987763 7799999999999999888888 766
No 115
>TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=35.25 E-value=2.6e+02 Score=23.13 Aligned_cols=59 Identities=17% Similarity=0.232 Sum_probs=39.5
Q ss_pred ccEEEecCCCHHHHHHHHHhCCCCceEeccccCcccc--c-HHHHHHHHhCCCeEEEecCCCC
Q 037019 15 TKFIGVSNFSSKKIEALLAFSTIPPSVNQVEMNPAWQ--Q-RQLREFCKSKSIIVNVFSPLGA 74 (175)
Q Consensus 15 Ir~iGvS~~~~~~i~~~~~~~~~~~~~~q~~~~~~~~--~-~~~~~~~~~~gi~vi~~~~l~~ 74 (175)
++..-+...+++.+++.++ .+.+..++....|+.-. + ..+.+.|+++|+.++.=...+.
T Consensus 111 ~~v~~vd~~d~~~le~~i~-~~tklv~le~psnptg~v~dl~~I~~la~~~g~~vivD~a~~~ 172 (378)
T TIGR01329 111 VVVVHVDTTDLDKVKAALG-PKTKLVLLESPTNPLQKIVDIRKISEMAHAQNALVVVDNTMMS 172 (378)
T ss_pred cEEEEeCCCCHHHHHHhcC-cCceEEEEECCCCCCCeeecHHHHHHHHHHcCCEEEEECCCcc
Confidence 3444444456777777764 33456666667776543 2 6799999999999998776654
No 116
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=35.20 E-value=1.1e+02 Score=20.84 Aligned_cols=36 Identities=22% Similarity=0.498 Sum_probs=28.0
Q ss_pred HHHHHHHHHHcCCccEEEecCCCHHHHHHHHHhCCC
Q 037019 2 LWEAMEVCQRLGLTKFIGVSNFSSKKIEALLAFSTI 37 (175)
Q Consensus 2 ~~~~l~~l~~~GkIr~iGvS~~~~~~i~~~~~~~~~ 37 (175)
+.+.++.+.+.|+--=+|.++|+.+++.++.+.+..
T Consensus 80 ~~~~~~~~~~~g~~~ViGTTG~~~~~~~~l~~~a~~ 115 (124)
T PF01113_consen 80 VYDNLEYALKHGVPLVIGTTGFSDEQIDELEELAKK 115 (124)
T ss_dssp HHHHHHHHHHHT-EEEEE-SSSHHHHHHHHHHHTTT
T ss_pred hHHHHHHHHhCCCCEEEECCCCCHHHHHHHHHHhcc
Confidence 346778888999999999999999999888876653
No 117
>PRK15072 bifunctional D-altronate/D-mannonate dehydratase; Provisional
Probab=35.12 E-value=1.6e+02 Score=24.64 Aligned_cols=68 Identities=15% Similarity=0.092 Sum_probs=51.5
Q ss_pred HHHHHHHHHcCCcc-EEEecCCCHHHHHHHHHhCCCCceEeccccCccc---ccHHHHHHHHhCCCeEEEecCC
Q 037019 3 WEAMEVCQRLGLTK-FIGVSNFSSKKIEALLAFSTIPPSVNQVEMNPAW---QQRQLREFCKSKSIIVNVFSPL 72 (175)
Q Consensus 3 ~~~l~~l~~~GkIr-~iGvS~~~~~~i~~~~~~~~~~~~~~q~~~~~~~---~~~~~~~~~~~~gi~vi~~~~l 72 (175)
++.+.+|++...|. ..|=|-+++..+..+++.. -.+++|....-+- ....+.++|+.+|+.++.+...
T Consensus 246 ~~~~~~L~~~~~iPIa~dEs~~~~~~~~~li~~~--a~dii~~d~~~~GGit~~~kia~lA~~~gi~~~~h~~~ 317 (404)
T PRK15072 246 QEAFRLIRQHTTTPLAVGEVFNSIWDCKQLIEEQ--LIDYIRTTVTHAGGITHLRRIADFAALYQVRTGSHGPT 317 (404)
T ss_pred HHHHHHHHhcCCCCEEeCcCccCHHHHHHHHHcC--CCCEEecCccccCcHHHHHHHHHHHHHcCCceeeccCc
Confidence 57788888886666 6667778999999998764 3577887666432 2368999999999999986554
No 118
>cd08605 GDPD_GDE5_like_1_plant Glycerophosphodiester phosphodiesterase domain of uncharacterized plant glycerophosphodiester phosphodiesterase-like proteins similar to mammalian GDE5. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized plant glycerophosphodiester phosphodiesterase (GP-PDE)-like proteins. Members in this family show very high sequence homology to mammalian glycerophosphodiester phosphodiesterase GDE5 and are distantly related to plant GP-PDEs.
Probab=34.68 E-value=2e+02 Score=22.58 Aligned_cols=29 Identities=24% Similarity=0.327 Sum_probs=21.3
Q ss_pred HHHHcCCccEEEecCCCHHHHHHHHHhCC
Q 037019 8 VCQRLGLTKFIGVSNFSSKKIEALLAFST 36 (175)
Q Consensus 8 ~l~~~GkIr~iGvS~~~~~~i~~~~~~~~ 36 (175)
.+++.|.-+.+=+|+|+++.+..+.....
T Consensus 163 ~i~~~~~~~~viisSF~~~~l~~l~~~~p 191 (282)
T cd08605 163 VCKQHAPGRRIMFSSFDPDAAVLLRALQS 191 (282)
T ss_pred HHHhcCCCCeEEEEeCCHHHHHHHHhcCc
Confidence 34455777778899999999988766443
No 119
>COG3033 TnaA Tryptophanase [Amino acid transport and metabolism]
Probab=34.21 E-value=1.1e+02 Score=25.95 Aligned_cols=50 Identities=28% Similarity=0.279 Sum_probs=35.7
Q ss_pred CCCHHHHHHHHHhCC---CCceEeccccCccccc-------HHHHHHHHhCCCeEEEecC
Q 037019 22 NFSSKKIEALLAFST---IPPSVNQVEMNPAWQQ-------RQLREFCKSKSIIVNVFSP 71 (175)
Q Consensus 22 ~~~~~~i~~~~~~~~---~~~~~~q~~~~~~~~~-------~~~~~~~~~~gi~vi~~~~ 71 (175)
|++.+.++++++..+ ++..+.-+--|....+ +.+.+.|+++||.++--+.
T Consensus 168 d~D~~kLe~lidevG~~nvp~I~~tiT~NsagGQpVSm~n~r~v~~ia~ky~ipvv~Da~ 227 (471)
T COG3033 168 NFDLEKLERLIDEVGADNVPYIVLTITNNSAGGQPVSMANMKAVYEIAKKYDIPVVMDAA 227 (471)
T ss_pred ccCHHHHHHHHHHhCcccCcEEEEEEeccccCCCcchHHhHHHHHHHHHHcCCcEEeehh
Confidence 577888888887665 5566666666655443 5789999999999886443
No 120
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=34.15 E-value=3e+02 Score=23.60 Aligned_cols=70 Identities=7% Similarity=0.014 Sum_probs=36.4
Q ss_pred HHHHHHHHHcCCcc-----EEEecCCCHHH---------HHHHHHhCCCCceEeccccCccccc-HHHHHHHHhCCCeEE
Q 037019 3 WEAMEVCQRLGLTK-----FIGVSNFSSKK---------IEALLAFSTIPPSVNQVEMNPAWQQ-RQLREFCKSKSIIVN 67 (175)
Q Consensus 3 ~~~l~~l~~~GkIr-----~iGvS~~~~~~---------i~~~~~~~~~~~~~~q~~~~~~~~~-~~~~~~~~~~gi~vi 67 (175)
++.|.+|.++|+|+ ++|..+..... |-+-+...+++-++.=--.-.++|. .-+..-..+.||.++
T Consensus 289 lD~LreLekEG~IG~L~~~fyst~G~gt~~~~a~~~g~eIa~~Lk~dgVDAVILTstCgtC~r~~a~m~keiE~~GiPvv 368 (431)
T TIGR01918 289 VDVLRDYEKEGKIGELHEYFYSTVGNGTTVAESKQFAKEFVVELKQGGVDAVILTSTUGTCTRCGATMVKEIERAGIPVV 368 (431)
T ss_pred HHHHHHHHHcCCcccccCeeEEcCCCCchHHHHHHHHHHHHHHHHHcCCCEEEEcCCCCcchhHHHHHHHHHHHcCCCEE
Confidence 57899999999996 44544432211 1112222222222211133444454 346666667777777
Q ss_pred EecCC
Q 037019 68 VFSPL 72 (175)
Q Consensus 68 ~~~~l 72 (175)
-+..+
T Consensus 369 ~~~~~ 373 (431)
T TIGR01918 369 HMCTV 373 (431)
T ss_pred EEeec
Confidence 66553
No 121
>COG1151 6Fe-6S prismane cluster-containing protein [Energy production and conversion]
Probab=33.94 E-value=57 Score=28.81 Aligned_cols=18 Identities=11% Similarity=-0.145 Sum_probs=14.1
Q ss_pred HHHHHHHHHHcCCccEEE
Q 037019 2 LWEAMEVCQRLGLTKFIG 19 (175)
Q Consensus 2 ~~~~l~~l~~~GkIr~iG 19 (175)
+...+-+++++|+||.+.
T Consensus 395 a~d~lielI~sGkIKgv~ 412 (576)
T COG1151 395 AADPLIELIASGKIKGVV 412 (576)
T ss_pred HHHHHHHHHhcCCcceEE
Confidence 345677889999999875
No 122
>cd07995 TPK Thiamine pyrophosphokinase. Thiamine pyrophosphokinase (TPK, EC:2.7.6.2, also spelled thiamin pyrophosphokinase) catalyzes the transfer of a pyrophosphate group from ATP to vitamin B1 (thiamine) to form the coenzyme thiamine pyrophosphate (TPP). TPP is required for central metabolic functions, and thiamine deficiency is associated with potentially fatal human diseases. The structure of thiamine pyrophosphokinase suggests that the enzyme may operate by a mechanism of pyrophosphoryl transfer similar to those described for pyrophosphokinases functioning in nucleotide biosynthesis.
Probab=33.94 E-value=2e+02 Score=21.54 Aligned_cols=72 Identities=22% Similarity=0.301 Sum_probs=47.6
Q ss_pred CCCceEeccccCcccccHHHHHHHHhCCCeEEEecCCCCCCCCCCCccccChHHHHHHHHHhCCCHHHHHHHHHHhCC--
Q 037019 36 TIPPSVNQVEMNPAWQQRQLREFCKSKSIIVNVFSPLGAVGSCWGTNQVMNNEALKQIADAHGETVAQVCLRWIIEQG-- 113 (175)
Q Consensus 36 ~~~~~~~q~~~~~~~~~~~~~~~~~~~gi~vi~~~~l~~~G~l~~~~~~~~~~~l~~~a~~~g~~~~q~al~~~l~~~-- 113 (175)
++.|+++--.+--. .++.+++.+++++.++.+.+- ...|-.++|++|+..++
T Consensus 39 gi~Pd~iiGDfDSi--~~~~~~~~~~~~~~~~~~p~~------------------------KD~TD~e~Al~~~~~~~~~ 92 (208)
T cd07995 39 GIVPDLIIGDFDSI--SPEVLEYYKSKGVEIIHFPDE------------------------KDFTDFEKALKLALERGAD 92 (208)
T ss_pred CCCCCEEEecCcCC--CHHHHHHHHhcCCeEEECCCC------------------------CCCCHHHHHHHHHHHcCCC
Confidence 44555554444211 266777777777666654431 14678899999999987
Q ss_pred cEEEecCC--CHHHHHHhhccc
Q 037019 114 AIVIAKSF--NKERLKENLDIF 133 (175)
Q Consensus 114 ~~~i~G~~--~~~~l~enl~a~ 133 (175)
.+.+.|++ ..+|.-.|+..+
T Consensus 93 ~i~i~Ga~GgR~DH~lani~~l 114 (208)
T cd07995 93 EIVILGATGGRLDHTLANLNLL 114 (208)
T ss_pred EEEEEccCCCcHHHHHHHHHHH
Confidence 66777765 688888888764
No 123
>PF01120 Alpha_L_fucos: Alpha-L-fucosidase; InterPro: IPR000933 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Family 29 (GH29 from CAZY) encompasses alpha-L-fucosidases (3.2.1.51 from EC) [], which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Alpha-L-fucosidase is responsible for hydrolysing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Fucosylated glycoconjugates are involved in numerous biological events, making alpha-l-fucosidases, the enzymes responsible for their processing, critically important. Deficiency in alpha-l-fucosidase activity is associated with fucosidosis, a lysosomal storage disorder characterised by rapid neurodegeneration, resulting in severe mental and motor deterioration []. The enzyme is a hexamer and displays a two-domain fold, composed of a catalytic (beta/alpha)(8)-like domain and a C-terminal beta-sandwich domain []. Drosophila melanogaster spermatozoa contains an alpha-l-fucosidase that might be involved in fertilisation by interacting with alpha-l-fucose residues on the micropyle of the eggshell []. In human sperm, membrane-associated alpha-l-fucosidase is stable for extended periods of time, which is made possible by membrane domains and compartmentalisation. These help preserve protein integrity []. ; GO: 0004560 alpha-L-fucosidase activity, 0005975 carbohydrate metabolic process; PDB: 3EYP_B 2ZX6_A 2ZWY_B 2ZX8_B 2WSP_A 2ZXA_A 2ZWZ_B 1ODU_B 1HL9_A 2ZX5_B ....
Probab=33.60 E-value=1e+02 Score=25.33 Aligned_cols=57 Identities=11% Similarity=0.123 Sum_probs=35.0
Q ss_pred EEecCCCHHHHHHHHHhCCCCceEe--------------ccccCcccc----c--HHHHHHHHhCCCeEEEecCCCC
Q 037019 18 IGVSNFSSKKIEALLAFSTIPPSVN--------------QVEMNPAWQ----Q--RQLREFCKSKSIIVNVFSPLGA 74 (175)
Q Consensus 18 iGvS~~~~~~i~~~~~~~~~~~~~~--------------q~~~~~~~~----~--~~~~~~~~~~gi~vi~~~~l~~ 74 (175)
+--+.|++++..++.+.++.+..+. ...||..+. + .++.+.|+++|+.+-.|-+...
T Consensus 86 F~p~~fD~dqW~~~ak~aGakY~VlTakHHDGF~LW~S~~t~~~v~~~~~krDiv~El~~A~rk~Glk~G~Y~S~~d 162 (346)
T PF01120_consen 86 FNPTKFDADQWAKLAKDAGAKYVVLTAKHHDGFCLWPSKYTDYNVVNSGPKRDIVGELADACRKYGLKFGLYYSPWD 162 (346)
T ss_dssp ---TT--HHHHHHHHHHTT-SEEEEEEE-TT--BSS--TT-SSBGGGGGGTS-HHHHHHHHHHHTT-EEEEEEESSS
T ss_pred CCcccCCHHHHHHHHHHcCCCEEEeehhhcCccccCCCCCCcccccCCCCCCCHHHHHHHHHHHcCCeEEEEecchH
Confidence 3446688888888888887544332 234444332 2 6899999999999999888754
No 124
>CHL00040 rbcL ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit
Probab=33.50 E-value=3e+02 Score=23.96 Aligned_cols=73 Identities=12% Similarity=0.144 Sum_probs=43.5
Q ss_pred HHHHHHHHHHc-CCccEEEe--cCCCHHHHHHHHHhC-CCCceEeccccCccccc--HHHHHHHHhCCCeEEEecCCCC
Q 037019 2 LWEAMEVCQRL-GLTKFIGV--SNFSSKKIEALLAFS-TIPPSVNQVEMNPAWQQ--RQLREFCKSKSIIVNVFSPLGA 74 (175)
Q Consensus 2 ~~~~l~~l~~~-GkIr~iGv--S~~~~~~i~~~~~~~-~~~~~~~q~~~~~~~~~--~~~~~~~~~~gi~vi~~~~l~~ 74 (175)
+++++++..++ |+-+-+-+ |.-+++++.+-.+.+ .....++.+.+...-.. ..+.+.|++.++.++++-.+.+
T Consensus 221 ~~~a~~~a~~eTG~~~~y~~NiTa~~~~em~~ra~~a~e~G~~~~mv~~~~~G~~al~~l~~~~~~~~l~IhaHrA~~g 299 (475)
T CHL00040 221 CAEAIYKAQAETGEIKGHYLNATAGTCEEMYKRAVFARELGVPIVMHDYLTGGFTANTSLAHYCRDNGLLLHIHRAMHA 299 (475)
T ss_pred HHHHHHHHHHhhCCcceeeeccCCCCHHHHHHHHHHHHHcCCceEEEeccccccchHHHHHHHhhhcCceEEecccccc
Confidence 46777777755 76544444 322355554332222 12335566666554333 6677888889999999888875
No 125
>PRK06361 hypothetical protein; Provisional
Probab=33.41 E-value=2e+02 Score=21.39 Aligned_cols=46 Identities=11% Similarity=0.156 Sum_probs=23.2
Q ss_pred HHHHHHHHhCCCeEEEecCCCCCCCCCCCccccChHHHHHHHHHhCCCHHHH
Q 037019 53 RQLREFCKSKSIIVNVFSPLGAVGSCWGTNQVMNNEALKQIADAHGETVAQV 104 (175)
Q Consensus 53 ~~~~~~~~~~gi~vi~~~~l~~~G~l~~~~~~~~~~~l~~~a~~~g~~~~q~ 104 (175)
..+++.+++.|+.++..+.-.. ...+...+.+..++++.|.+..++
T Consensus 151 ~~~l~~a~~~gi~vv~~SDaH~------~~d~~~~~~~~~i~~~~gl~~~~v 196 (212)
T PRK06361 151 GHVARIAREAGAPLVINTDTHA------PSDLITYEFARKVALGAGLTEKEL 196 (212)
T ss_pred HHHHHHHHHhCCcEEEECCCCC------HHHHHHHHHHHHHHcCCCCCHHHH
Confidence 4566666666666555444332 112223345555555555555543
No 126
>PRK01018 50S ribosomal protein L30e; Reviewed
Probab=33.33 E-value=1.4e+02 Score=19.66 Aligned_cols=62 Identities=11% Similarity=0.107 Sum_probs=41.3
Q ss_pred HHHHHHHHHHcCCccEEEecCCCHHHHHHHHHhCCCCceEeccccCcccccHHHHHHHHhCCCeEEEec
Q 037019 2 LWEAMEVCQRLGLTKFIGVSNFSSKKIEALLAFSTIPPSVNQVEMNPAWQQRQLREFCKSKSIIVNVFS 70 (175)
Q Consensus 2 ~~~~l~~l~~~GkIr~iGvS~~~~~~i~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~gi~vi~~~ 70 (175)
+-.+|...++.|++.. ...+..+.++....++.++--..+. .....+..+|+.++|+++.|.
T Consensus 4 ~~~~l~~a~ragkl~~------G~~~v~kai~~gkaklViiA~D~~~-~~~~~i~~~c~~~~Ip~~~~~ 65 (99)
T PRK01018 4 FNRELRVAVDTGKVIL------GSKRTIKAIKLGKAKLVIVASNCPK-DIKEDIEYYAKLSGIPVYEYE 65 (99)
T ss_pred HHHHHHHHHHcCCEEE------cHHHHHHHHHcCCceEEEEeCCCCH-HHHHHHHHHHHHcCCCEEEEC
Confidence 4456777788887532 2455666666666666666666433 333779999999999987763
No 127
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=33.13 E-value=2.5e+02 Score=22.26 Aligned_cols=71 Identities=8% Similarity=0.038 Sum_probs=39.2
Q ss_pred HHHHHHHHH-HcCCccEEEecCCCH------HHHHHHHHhCCCCceEeccccCcccccHHHHHHHHhCCCeEEEecCCCC
Q 037019 2 LWEAMEVCQ-RLGLTKFIGVSNFSS------KKIEALLAFSTIPPSVNQVEMNPAWQQRQLREFCKSKSIIVNVFSPLGA 74 (175)
Q Consensus 2 ~~~~l~~l~-~~GkIr~iGvS~~~~------~~i~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~gi~vi~~~~l~~ 74 (175)
+++.+.+++ +.-.+.-+=++-+++ +.+.+.+..++ ++-+-++=-++....++.+.|+++|+.++...+-..
T Consensus 74 ~~~~~~~ir~~~~~~pivlm~Y~N~i~~~G~e~F~~~~~~aG--vdGlIipDLP~ee~~~~~~~~~~~gl~~I~lv~p~t 151 (259)
T PF00290_consen 74 IFELVKEIRKKEPDIPIVLMTYYNPIFQYGIERFFKEAKEAG--VDGLIIPDLPPEESEELREAAKKHGLDLIPLVAPTT 151 (259)
T ss_dssp HHHHHHHHHHHCTSSEEEEEE-HHHHHHH-HHHHHHHHHHHT--EEEEEETTSBGGGHHHHHHHHHHTT-EEEEEEETTS
T ss_pred HHHHHHHHhccCCCCCEEEEeeccHHhccchHHHHHHHHHcC--CCEEEEcCCChHHHHHHHHHHHHcCCeEEEEECCCC
Confidence 466777777 666666666666543 33333333332 222222222233446788999999999888776643
No 128
>KOG1185 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=33.09 E-value=70 Score=27.95 Aligned_cols=108 Identities=20% Similarity=0.230 Sum_probs=59.4
Q ss_pred ecCCCHHHHHHHH---HhCCCCceEeccccCcccccHHHHHHHHhCCCeEEEecCCCCCCCCCCCccccChHHHHHHHHH
Q 037019 20 VSNFSSKKIEALL---AFSTIPPSVNQVEMNPAWQQRQLREFCKSKSIIVNVFSPLGAVGSCWGTNQVMNNEALKQIADA 96 (175)
Q Consensus 20 vS~~~~~~i~~~~---~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~gi~vi~~~~l~~~G~l~~~~~~~~~~~l~~~a~~ 96 (175)
++.-++++++++. +.++-++.++=-.--+...+.++..+.+..|+.++. .|++. |++...-++.-......-.++
T Consensus 199 i~~p~~s~i~~av~llk~AKrPLlvvGkgAa~~~ae~~l~~~Ve~~glPflp-tpMgK-Gll~d~hPl~v~~aRS~ALk~ 276 (571)
T KOG1185|consen 199 IPGPPPSQIQKAVQLLKSAKRPLLVVGKGAAYAPAEDQLRKFVETTGLPFLP-TPMGK-GLLPDNHPLNVSSARSLALKK 276 (571)
T ss_pred CCCCCHHHHHHHHHHHHhcCCcEEEEecccccCccHHHHHHHHHhcCCCccc-Ccccc-cCCCCCCchhhhHHHHHHHhh
Confidence 4556677777664 455544433322222222457899999999999988 89999 998544333211111111112
Q ss_pred hCC-CHHHHHHHHHHhCC--------cEEEecCCCHHHHHHh
Q 037019 97 HGE-TVAQVCLRWIIEQG--------AIVIAKSFNKERLKEN 129 (175)
Q Consensus 97 ~g~-~~~q~al~~~l~~~--------~~~i~G~~~~~~l~en 129 (175)
..+ -.+-.-+.|+|+.+ +-.|-==+|+|+|..|
T Consensus 277 ADvvll~GarlnwiLhfG~~Pk~~kd~KfIqvd~n~Eel~~n 318 (571)
T KOG1185|consen 277 ADVVLLAGARLNWILHFGLPPKWSKDVKFIQVDINPEELGNN 318 (571)
T ss_pred CCEEEEecceeeEEEecCCCCccCCCceEEEEeCCHHHHhcc
Confidence 121 12233455666654 3334444677777777
No 129
>PRK09449 dUMP phosphatase; Provisional
Probab=32.82 E-value=2.1e+02 Score=21.27 Aligned_cols=34 Identities=15% Similarity=-0.005 Sum_probs=22.8
Q ss_pred CHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHhCC
Q 037019 1 GLWEAMEVCQRLGLTKFIGVSNFSSKKIEALLAFST 36 (175)
Q Consensus 1 e~~~~l~~l~~~GkIr~iGvS~~~~~~i~~~~~~~~ 36 (175)
++.+.|+.|+ +| ++-.=+||-+.+.....++..+
T Consensus 99 g~~~~L~~L~-~~-~~~~i~Tn~~~~~~~~~l~~~~ 132 (224)
T PRK09449 99 GAVELLNALR-GK-VKMGIITNGFTELQQVRLERTG 132 (224)
T ss_pred cHHHHHHHHH-hC-CeEEEEeCCcHHHHHHHHHhCC
Confidence 3567888888 56 5544467777777776666554
No 130
>cd03318 MLE Muconate Lactonizing Enzyme (MLE), an homooctameric enzyme, catalyses the conversion of cis,cis-muconate (CCM) to muconolactone (ML) in the catechol branch of the beta-ketoadipate pathway. This pathway is used in soil microbes to breakdown lignin-derived aromatics, catechol and protocatechuate, to citric acid cycle intermediates. Some bacterial species are also capable of dehalogenating chloroaromatic compounds by the action of chloromuconate lactonizing enzymes (Cl-MLEs). MLEs are members of the enolase superfamily characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=32.63 E-value=1.6e+02 Score=24.09 Aligned_cols=65 Identities=6% Similarity=-0.006 Sum_probs=40.4
Q ss_pred HHHHHHHHHcCCcc-EEEecCCCHHHHHHHHHhCCCCceEeccccCccc---ccHHHHHHHHhCCCeEEEe
Q 037019 3 WEAMEVCQRLGLTK-FIGVSNFSSKKIEALLAFSTIPPSVNQVEMNPAW---QQRQLREFCKSKSIIVNVF 69 (175)
Q Consensus 3 ~~~l~~l~~~GkIr-~iGvS~~~~~~i~~~~~~~~~~~~~~q~~~~~~~---~~~~~~~~~~~~gi~vi~~ 69 (175)
++.+.+|+++..|. ..|=|-++...+..+++... ++++|+.....- ....+..+|+++|+.++..
T Consensus 228 ~~~~~~l~~~~~~pia~dE~~~~~~~~~~~i~~~~--~d~~~~d~~~~GGit~~~~~~~~a~~~gi~~~~~ 296 (365)
T cd03318 228 LDGLARLRSRNRVPIMADESVSGPADAFELARRGA--ADVFSLKIAKSGGLRRAQKVAAIAEAAGIALYGG 296 (365)
T ss_pred HHHHHHHHhhcCCCEEcCcccCCHHHHHHHHHhCC--CCeEEEeecccCCHHHHHHHHHHHHHcCCceeec
Confidence 45667777765555 55555567777777776542 455565544332 2256778888888877654
No 131
>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.
Probab=32.55 E-value=1.9e+02 Score=21.26 Aligned_cols=38 Identities=13% Similarity=0.098 Sum_probs=25.9
Q ss_pred CHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHhCCCC
Q 037019 1 GLWEAMEVCQRLGLTKFIGVSNFSSKKIEALLAFSTIP 38 (175)
Q Consensus 1 e~~~~l~~l~~~GkIr~iGvS~~~~~~i~~~~~~~~~~ 38 (175)
++-+.|.+|++.|---++-=.+..++..+++++..++.
T Consensus 49 dv~~iL~~L~~~gv~lavASRt~~P~~A~~~L~~l~i~ 86 (169)
T PF12689_consen 49 DVPEILQELKERGVKLAVASRTDEPDWARELLKLLEID 86 (169)
T ss_dssp THHHHHHHHHHCT--EEEEE--S-HHHHHHHHHHTT-C
T ss_pred CHHHHHHHHHHCCCEEEEEECCCChHHHHHHHHhcCCC
Confidence 46688999999888666666678899999999877654
No 132
>cd03314 MAL Methylaspartate ammonia lyase (3-methylaspartase, MAL) is a homodimeric enzyme, catalyzing the magnesium-dependent reversible alpha,beta-elimination of ammonia from L-threo-(2S,3S)-3-methylaspartic acid to mesaconic acid. This reaction is part of the main catabolic pathway for glutamate. MAL belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=32.28 E-value=1.9e+02 Score=24.10 Aligned_cols=68 Identities=10% Similarity=0.043 Sum_probs=49.2
Q ss_pred HHHHHHHHHc------CCccEEEecCCCHHHHHHHHHhCCCCceEeccccCccc---ccHHHHHHHHhCCCeEEEecCC
Q 037019 3 WEAMEVCQRL------GLTKFIGVSNFSSKKIEALLAFSTIPPSVNQVEMNPAW---QQRQLREFCKSKSIIVNVFSPL 72 (175)
Q Consensus 3 ~~~l~~l~~~------GkIr~iGvS~~~~~~i~~~~~~~~~~~~~~q~~~~~~~---~~~~~~~~~~~~gi~vi~~~~l 72 (175)
++.+.+++++ +.=-..|=|.++...+.++++.. -.+++|...+-+- ....+.++|+.+|+.++.....
T Consensus 245 ~~~~a~Lr~~~~~~~~~iPIa~dEs~~t~~d~~~li~~~--a~div~~kl~k~GGIt~a~kia~lA~a~Gi~~~~h~~~ 321 (369)
T cd03314 245 IERMAALRAELDRRGVGVRIVADEWCNTLEDIRDFADAG--AAHMVQIKTPDLGGIDNTIDAVLYCKEHGVGAYLGGSC 321 (369)
T ss_pred HHHHHHHHHHhhcCCCCceEEecCCcCCHHHHHHHHHhC--CCCEEEecchhcCCHHHHHHHHHHHHHcCCcEEEeCCC
Confidence 6778888776 44445556668899998888764 3577777776543 2377999999999999986543
No 133
>cd04436 DEP_fRgd2 DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in fungal RhoGAP (GTPase-activator protein) Rgd2-like proteins. Rgd2-like proteins share a common domain architecture, containing, beside the RhoGAP domain, a DEP and a FCH (Fes/CIP4 homology) domain. Yeast Rgd2 is a GAP protein for Cdc42 and Rho5.
Probab=32.09 E-value=18 Score=23.47 Aligned_cols=16 Identities=19% Similarity=0.434 Sum_probs=13.6
Q ss_pred HHHHHcCCccEEE-ecC
Q 037019 7 EVCQRLGLTKFIG-VSN 22 (175)
Q Consensus 7 ~~l~~~GkIr~iG-vS~ 22 (175)
++|.+.|.||++| +++
T Consensus 56 QdLv~~gfir~~g~vG~ 72 (84)
T cd04436 56 QDLLNQGFLRLVGGVGS 72 (84)
T ss_pred HHHHhCchHHHhcccCc
Confidence 5788999999999 655
No 134
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=32.07 E-value=2.6e+02 Score=23.01 Aligned_cols=52 Identities=12% Similarity=0.133 Sum_probs=32.2
Q ss_pred CCHHHHHHHHHhCC--CC-ceEeccccCcccccHHHHHHHHhCCCeEEEecCCCC
Q 037019 23 FSSKKIEALLAFST--IP-PSVNQVEMNPAWQQRQLREFCKSKSIIVNVFSPLGA 74 (175)
Q Consensus 23 ~~~~~i~~~~~~~~--~~-~~~~q~~~~~~~~~~~~~~~~~~~gi~vi~~~~l~~ 74 (175)
.+++++.++++... +. -.-+-++.|+-.-..+.++..++.|+.-+..+.-+.
T Consensus 70 L~~~~l~~ll~~i~~~~~~~~eitiE~nP~~lt~e~l~~lk~~G~nrisiGvQS~ 124 (353)
T PRK05904 70 LNDQLLDILLSTIKPYVDNNCEFTIECNPELITQSQINLLKKNKVNRISLGVQSM 124 (353)
T ss_pred CCHHHHHHHHHHHHHhcCCCCeEEEEeccCcCCHHHHHHHHHcCCCEEEEecccC
Confidence 46677777764332 11 123445556655568899999999987776555543
No 135
>TIGR02814 pfaD_fam PfaD family protein. The protein PfaD is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. Several other members of the seed alignment for this model are found in loci presumed to act in polyketide biosyntheses per se.
Probab=32.00 E-value=1.8e+02 Score=24.99 Aligned_cols=64 Identities=17% Similarity=0.226 Sum_probs=44.5
Q ss_pred HHHHHcCCccEEEecCCCHHHHHHHHHhCC----C-C-ceEeccccCcccc--cHHHHHHHHhCCCeEEEecC
Q 037019 7 EVCQRLGLTKFIGVSNFSSKKIEALLAFST----I-P-PSVNQVEMNPAWQ--QRQLREFCKSKSIIVNVFSP 71 (175)
Q Consensus 7 ~~l~~~GkIr~iGvS~~~~~~i~~~~~~~~----~-~-~~~~q~~~~~~~~--~~~~~~~~~~~gi~vi~~~~ 71 (175)
..+-+.|-...+|..+.+++++++.+...+ . + |-+|-+. +.-+. +..+++.|.++||.++..+.
T Consensus 37 aAVs~AGgLG~lgag~l~~e~l~~~I~~ir~~~~~~p~fGVNL~~-~~~~~~~e~~~v~l~l~~~V~~veasa 108 (444)
T TIGR02814 37 IAMGRAGILGFFGAGGLPLEEVEQAIHRIQQALPGGPAYGVNLIH-SPSDPALEWGLVDLLLRHGVRIVEASA 108 (444)
T ss_pred HHHHhCCceeeeCCCCCCHHHHHHHHHHHHHhcCCCCceEEEecc-cCCCcccHHHHHHHHHHcCCCEEEecc
Confidence 345578999999999999999987754332 1 3 5665542 22222 25689999999999887653
No 136
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=31.89 E-value=2.2e+02 Score=21.22 Aligned_cols=34 Identities=26% Similarity=0.379 Sum_probs=22.4
Q ss_pred HHHHHHHHHHcCCccEEEecCCCHHHHHHHHHhCC
Q 037019 2 LWEAMEVCQRLGLTKFIGVSNFSSKKIEALLAFST 36 (175)
Q Consensus 2 ~~~~l~~l~~~GkIr~iGvS~~~~~~i~~~~~~~~ 36 (175)
+.+.|+.++++|.--+| +||.+...++..++..+
T Consensus 97 ~~~~l~~l~~~g~~~~i-~S~~~~~~~~~~l~~~~ 130 (222)
T PRK10826 97 VREALALCKAQGLKIGL-ASASPLHMLEAVLTMFD 130 (222)
T ss_pred HHHHHHHHHHCCCeEEE-EeCCcHHHHHHHHHhCc
Confidence 55677778887754455 77777666666666543
No 137
>COG1735 Php Predicted metal-dependent hydrolase with the TIM-barrel fold [General function prediction only]
Probab=31.86 E-value=82 Score=25.69 Aligned_cols=16 Identities=19% Similarity=0.380 Sum_probs=9.8
Q ss_pred HHhCCCeEEEecCCCC
Q 037019 59 CKSKSIIVNVFSPLGA 74 (175)
Q Consensus 59 ~~~~gi~vi~~~~l~~ 74 (175)
.++.|++++...+.+-
T Consensus 161 ~~~Tg~Pi~tHt~~gt 176 (316)
T COG1735 161 HKETGAPISTHTPAGT 176 (316)
T ss_pred hhhcCCCeEEeccchh
Confidence 3455777777766644
No 138
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=31.39 E-value=2.1e+02 Score=21.00 Aligned_cols=65 Identities=15% Similarity=0.011 Sum_probs=47.9
Q ss_pred HHcCCccEEEecCCCHHHHHHHHHhCCCCceEeccccCccccc-------HHHHHHHHhCCCeEEEecCCCC
Q 037019 10 QRLGLTKFIGVSNFSSKKIEALLAFSTIPPSVNQVEMNPAWQQ-------RQLREFCKSKSIIVNVFSPLGA 74 (175)
Q Consensus 10 ~~~GkIr~iGvS~~~~~~i~~~~~~~~~~~~~~q~~~~~~~~~-------~~~~~~~~~~gi~vi~~~~l~~ 74 (175)
-+++-|++|=|.+-+-....++++.......++-+.|+.-..+ .++.+..+++|..+..-+-..+
T Consensus 23 A~elgik~~vVAS~tG~tA~k~lemveg~lkvVvVthh~Gf~e~g~~e~~~E~~~~L~erGa~v~~~sHalS 94 (186)
T COG1751 23 AKELGIKHIVVASSTGYTALKALEMVEGDLKVVVVTHHAGFEEKGTQEMDEEVRKELKERGAKVLTQSHALS 94 (186)
T ss_pred HHhcCcceEEEEecccHHHHHHHHhcccCceEEEEEeecccccCCceecCHHHHHHHHHcCceeeeehhhhh
Confidence 3556789998888877777778777765566666767665542 6899999999998887655444
No 139
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=31.37 E-value=2.4e+02 Score=21.58 Aligned_cols=66 Identities=17% Similarity=0.106 Sum_probs=36.3
Q ss_pred HHHHHHHHHHcC-CccEEEecCCCHHHHHHHHHhCCCCceEeccccCcc----------------cccHHHHHHHHhCCC
Q 037019 2 LWEAMEVCQRLG-LTKFIGVSNFSSKKIEALLAFSTIPPSVNQVEMNPA----------------WQQRQLREFCKSKSI 64 (175)
Q Consensus 2 ~~~~l~~l~~~G-kIr~iGvS~~~~~~i~~~~~~~~~~~~~~q~~~~~~----------------~~~~~~~~~~~~~gi 64 (175)
.++.++++++.+ .++...++....+.++.+.+.. .+.+++.+..- ..-...+++++++|+
T Consensus 53 ~~~~i~~l~~~~~~~~~~~l~~~~~~~i~~a~~~g---~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~ 129 (265)
T cd03174 53 DWEVLRAIRKLVPNVKLQALVRNREKGIERALEAG---VDEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGL 129 (265)
T ss_pred HHHHHHHHHhccCCcEEEEEccCchhhHHHHHhCC---cCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCC
Confidence 456677777776 5666566655555555555432 33444433332 111356677777777
Q ss_pred eEEEec
Q 037019 65 IVNVFS 70 (175)
Q Consensus 65 ~vi~~~ 70 (175)
.+....
T Consensus 130 ~v~~~~ 135 (265)
T cd03174 130 EVEGSL 135 (265)
T ss_pred eEEEEE
Confidence 666555
No 140
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=31.23 E-value=1.1e+02 Score=22.95 Aligned_cols=66 Identities=21% Similarity=0.169 Sum_probs=42.3
Q ss_pred HHHHHHcCCccEEEecCCCHHHHHHHHHhCCCCceEeccccC-c--ccccHHHHHHHHhCCCeEEEecCCCC
Q 037019 6 MEVCQRLGLTKFIGVSNFSSKKIEALLAFSTIPPSVNQVEMN-P--AWQQRQLREFCKSKSIIVNVFSPLGA 74 (175)
Q Consensus 6 l~~l~~~GkIr~iGvS~~~~~~i~~~~~~~~~~~~~~q~~~~-~--~~~~~~~~~~~~~~gi~vi~~~~l~~ 74 (175)
..++++.|- ..+-.+-.+++.+.++++-.+ ..++-.... . ......+++.|++.||..+.++.++.
T Consensus 37 ~~~l~~~g~-~vv~~d~~~~~~l~~al~g~d--~v~~~~~~~~~~~~~~~~~li~Aa~~agVk~~v~ss~~~ 105 (233)
T PF05368_consen 37 AQQLQALGA-EVVEADYDDPESLVAALKGVD--AVFSVTPPSHPSELEQQKNLIDAAKAAGVKHFVPSSFGA 105 (233)
T ss_dssp HHHHHHTTT-EEEES-TT-HHHHHHHHTTCS--EEEEESSCSCCCHHHHHHHHHHHHHHHT-SEEEESEESS
T ss_pred hhhhhcccc-eEeecccCCHHHHHHHHcCCc--eEEeecCcchhhhhhhhhhHHHhhhccccceEEEEEecc
Confidence 456667766 456666668888888887443 333333322 1 12236799999999999999999977
No 141
>PRK14455 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=31.13 E-value=2.5e+02 Score=23.27 Aligned_cols=73 Identities=19% Similarity=0.219 Sum_probs=35.2
Q ss_pred HHHHHHHHHHcC----CccEEEecCC--CHHHHHHHHHhCC-CCceEeccccCccccc----------HHHHHHHHhCCC
Q 037019 2 LWEAMEVCQRLG----LTKFIGVSNF--SSKKIEALLAFST-IPPSVNQVEMNPAWQQ----------RQLREFCKSKSI 64 (175)
Q Consensus 2 ~~~~l~~l~~~G----kIr~iGvS~~--~~~~i~~~~~~~~-~~~~~~q~~~~~~~~~----------~~~~~~~~~~gi 64 (175)
++++++++.+++ +|+++=+.++ +.+.++++.+... .+..++-++||+.... ....+.++++|+
T Consensus 248 Il~~l~~~~~~~~~~v~iey~lI~gvNDs~ed~~~La~ll~~l~~~VnLIPynp~~~~ky~~ps~e~l~~f~~~L~~~gi 327 (356)
T PRK14455 248 LMEAIEYYIEKTNRRVTFEYILLGGVNDQVEHAEELADLLKGIKCHVNLIPVNPVPERDYVRTPKEDIFAFEDTLKKNGV 327 (356)
T ss_pred HHHHHHHHHHhcCCeEEEEEEEeCCCCCCHHHHHHHHHHHhcCCCcEEEEecCcCCCCCCcCCCHHHHHHHHHHHHHCCC
Confidence 345555554432 1233433332 3355554444332 2345555666655421 234455666677
Q ss_pred eEEEecCCCC
Q 037019 65 IVNVFSPLGA 74 (175)
Q Consensus 65 ~vi~~~~l~~ 74 (175)
.+..+.+.+.
T Consensus 328 ~v~ir~~~g~ 337 (356)
T PRK14455 328 NCTIRREHGT 337 (356)
T ss_pred cEEEeCCCCc
Confidence 7666665554
No 142
>COG4130 Predicted sugar epimerase [Carbohydrate transport and metabolism]
Probab=30.81 E-value=2.6e+02 Score=21.85 Aligned_cols=73 Identities=22% Similarity=0.239 Sum_probs=48.6
Q ss_pred CCHHHHHHHHHhCCCCceEec--cccCccccc-----HHHHHHHHhCCCeEEEecCCCCCCCCCCCccccC-------hH
Q 037019 23 FSSKKIEALLAFSTIPPSVNQ--VEMNPAWQQ-----RQLREFCKSKSIIVNVFSPLGAVGSCWGTNQVMN-------NE 88 (175)
Q Consensus 23 ~~~~~i~~~~~~~~~~~~~~q--~~~~~~~~~-----~~~~~~~~~~gi~vi~~~~l~~~G~l~~~~~~~~-------~~ 88 (175)
.++.+++.+.+.+++.+..+- .+||.++.+ .++.+|++.-|-.-..+-|+.. |--- +...+ .+
T Consensus 49 ~p~a~vka~Aek~Gl~IvSINAlypFn~wt~~~~a~a~~la~yA~acGA~aLvlcPlNd-~s~~--~~~vr~~~lv~Alk 125 (272)
T COG4130 49 TPAAEVKALAEKAGLTIVSINALYPFNEWTEERVAEARGLADYAAACGAKALVLCPLND-GSWP--GTAVRREDLVEALK 125 (272)
T ss_pred CCHHHHHHHHHHcCcEEEEeeccccccccChHHHHHHHHHHHHHHhcCCceEEEEeccC-CCCC--CcccchHHHHHHHH
Confidence 468889999988875443332 256665543 5799999999999999999977 4321 11111 25
Q ss_pred HHHHHHHHhC
Q 037019 89 ALKQIADAHG 98 (175)
Q Consensus 89 ~l~~~a~~~g 98 (175)
.|+.+..++|
T Consensus 126 aLkpil~~~g 135 (272)
T COG4130 126 ALKPILDEYG 135 (272)
T ss_pred HhhHHHHHhC
Confidence 6666777776
No 143
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=30.58 E-value=3.4e+02 Score=23.13 Aligned_cols=61 Identities=13% Similarity=0.127 Sum_probs=38.6
Q ss_pred CccEEEecC-----CCHHHHHHHHHhCC----CCc-eEeccccCcccccHHHHHHHHhCCCeEEEecCCCC
Q 037019 14 LTKFIGVSN-----FSSKKIEALLAFST----IPP-SVNQVEMNPAWQQRQLREFCKSKSIIVNVFSPLGA 74 (175)
Q Consensus 14 kIr~iGvS~-----~~~~~i~~~~~~~~----~~~-~~~q~~~~~~~~~~~~~~~~~~~gi~vi~~~~l~~ 74 (175)
.|..|-+.+ .+++++.++++... ... .-+-++.|+-.-..+.++.+++.|+.-+..+.-+.
T Consensus 103 ~v~~i~fgGGTPs~l~~~~l~~ll~~i~~~~~~~~~~e~tie~~p~~lt~e~l~~L~~~G~~rvsiGvQS~ 173 (453)
T PRK13347 103 RVSQLHWGGGTPTILNPDQFERLMAALRDAFDFAPEAEIAVEIDPRTVTAEMLQALAALGFNRASFGVQDF 173 (453)
T ss_pred eEEEEEEcCcccccCCHHHHHHHHHHHHHhCCCCCCceEEEEeccccCCHHHHHHHHHcCCCEEEECCCCC
Confidence 566666544 45778877765432 111 12344556655678999999999987777665543
No 144
>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]
Probab=30.55 E-value=1.3e+02 Score=23.97 Aligned_cols=46 Identities=22% Similarity=0.312 Sum_probs=35.3
Q ss_pred HHHHHHHHHHcCCccEEEecCCCHHHHHHHHHhCCCCceEeccccC
Q 037019 2 LWEAMEVCQRLGLTKFIGVSNFSSKKIEALLAFSTIPPSVNQVEMN 47 (175)
Q Consensus 2 ~~~~l~~l~~~GkIr~iGvS~~~~~~i~~~~~~~~~~~~~~q~~~~ 47 (175)
+.+.++.+.+.|+.-=||-++|+.+++.++.+....-+.++--.||
T Consensus 82 ~~~~l~~~~~~~~~lVIGTTGf~~e~~~~l~~~a~~v~vv~a~NfS 127 (266)
T COG0289 82 TLENLEFALEHGKPLVIGTTGFTEEQLEKLREAAEKVPVVIAPNFS 127 (266)
T ss_pred hHHHHHHHHHcCCCeEEECCCCCHHHHHHHHHHHhhCCEEEeccch
Confidence 4567888899999999999999999998887766544455544444
No 145
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=30.39 E-value=2.2e+02 Score=23.17 Aligned_cols=66 Identities=9% Similarity=0.143 Sum_probs=43.8
Q ss_pred HHHHHHHHHcCCcc-EEEecCCCHHHHHHHHHhCCCCceEeccccCccc---ccHHHHHHHHhCCCeEEEec
Q 037019 3 WEAMEVCQRLGLTK-FIGVSNFSSKKIEALLAFSTIPPSVNQVEMNPAW---QQRQLREFCKSKSIIVNVFS 70 (175)
Q Consensus 3 ~~~l~~l~~~GkIr-~iGvS~~~~~~i~~~~~~~~~~~~~~q~~~~~~~---~~~~~~~~~~~~gi~vi~~~ 70 (175)
++.+.++++.-.|. ..|=|-++++.+.++++.. ..+++|+....+- ....+..+|+++|+.++...
T Consensus 229 ~~~~~~l~~~~~ipi~~dE~~~~~~~~~~~i~~~--~~d~v~~k~~~~GGi~~~~~i~~~a~~~g~~~~~~~ 298 (357)
T cd03316 229 LEGLARLRQATSVPIAAGENLYTRWEFRDLLEAG--AVDIIQPDVTKVGGITEAKKIAALAEAHGVRVAPHG 298 (357)
T ss_pred HHHHHHHHHhCCCCEEeccccccHHHHHHHHHhC--CCCEEecCccccCCHHHHHHHHHHHHHcCCeEeccC
Confidence 56677777775555 3334447788888887654 3567777655442 23678888889988877643
No 146
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=30.24 E-value=3.3e+02 Score=22.82 Aligned_cols=80 Identities=16% Similarity=0.165 Sum_probs=46.1
Q ss_pred CCHHHHHHHHHhCC----CCc-eEeccccCcccccHHHHHHHHhCCCeEEEecCCCCCCCCCCCccccChHHHHHHHHHh
Q 037019 23 FSSKKIEALLAFST----IPP-SVNQVEMNPAWQQRQLREFCKSKSIIVNVFSPLGAVGSCWGTNQVMNNEALKQIADAH 97 (175)
Q Consensus 23 ~~~~~i~~~~~~~~----~~~-~~~q~~~~~~~~~~~~~~~~~~~gi~vi~~~~l~~~G~l~~~~~~~~~~~l~~~a~~~ 97 (175)
.+++.+.++++... +.. .-+-++.|+-.-..+.++.+++.|+.-+..++-.. ..+.++.+-+.+
T Consensus 80 l~~~~l~~ll~~i~~~~~~~~~~eit~E~~P~~lt~e~l~~l~~~GvnrislGvQS~-----------~d~~L~~l~R~~ 148 (400)
T PRK07379 80 LSVEQLERILTTLDQRFGIAPDAEISLEIDPGTFDLEQLQGYRSLGVNRVSLGVQAF-----------QDELLALCGRSH 148 (400)
T ss_pred CCHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCcCCHHHHHHHHHCCCCEEEEEcccC-----------CHHHHHHhCCCC
Confidence 56778877765432 211 23444556655668899999999988777766654 234444444433
Q ss_pred CCCHHHHHHHHHHhCC
Q 037019 98 GETVAQVCLRWIIEQG 113 (175)
Q Consensus 98 g~~~~q~al~~~l~~~ 113 (175)
......-++..+...+
T Consensus 149 ~~~~~~~ai~~l~~~G 164 (400)
T PRK07379 149 RVKDIFAAVDLIHQAG 164 (400)
T ss_pred CHHHHHHHHHHHHHcC
Confidence 3333444454544443
No 147
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.
Probab=30.12 E-value=2.5e+02 Score=21.40 Aligned_cols=34 Identities=9% Similarity=0.206 Sum_probs=24.4
Q ss_pred CHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHhC
Q 037019 1 GLWEAMEVCQRLGLTKFIGVSNFSSKKIEALLAFS 35 (175)
Q Consensus 1 e~~~~l~~l~~~GkIr~iGvS~~~~~~i~~~~~~~ 35 (175)
++.+.|+.|+++|.--.| +||.+.+.+..+++..
T Consensus 103 g~~e~L~~L~~~g~~l~I-vT~~~~~~~~~~l~~~ 136 (253)
T TIGR01422 103 GVIEVIAYLRARGIKIGS-TTGYTREMMDVVAPEA 136 (253)
T ss_pred CHHHHHHHHHHCCCeEEE-ECCCcHHHHHHHHHHH
Confidence 356788999998855455 7888877777776544
No 148
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=30.09 E-value=3.3e+02 Score=22.79 Aligned_cols=65 Identities=17% Similarity=0.155 Sum_probs=41.5
Q ss_pred HHHHHHHHcCCccEEEecCCCHHHHHHHHHhCCCCceEeccc-----c-CcccccHHHHHHHHhCCCeEEE
Q 037019 4 EAMEVCQRLGLTKFIGVSNFSSKKIEALLAFSTIPPSVNQVE-----M-NPAWQQRQLREFCKSKSIIVNV 68 (175)
Q Consensus 4 ~~l~~l~~~GkIr~iGvS~~~~~~i~~~~~~~~~~~~~~q~~-----~-~~~~~~~~~~~~~~~~gi~vi~ 68 (175)
+.++++++.|..-.+.++.....++.+.+..++.++.+++.. | +-.-....+.+++++.+|.|++
T Consensus 123 ~ii~~vr~a~VtvkiRl~~~~~~e~a~~l~eAGad~I~ihgrt~~q~~~sg~~~p~~l~~~i~~~~IPVI~ 193 (369)
T TIGR01304 123 ERIAEVRDSGVITAVRVSPQNAREIAPIVVKAGADLLVIQGTLVSAEHVSTSGEPLNLKEFIGELDVPVIA 193 (369)
T ss_pred HHHHHHHhcceEEEEecCCcCHHHHHHHHHHCCCCEEEEeccchhhhccCCCCCHHHHHHHHHHCCCCEEE
Confidence 456677777766667776666666666666677666665432 2 2111124588888888888886
No 149
>cd05126 Mth938 Mth938 domain. Mth938 is a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. This protein crystallizes as a dimer, although it is monomeric in solution, with one disulfide bond in each monomer. The function of the protein has not been determined.
Probab=30.07 E-value=1.9e+02 Score=19.88 Aligned_cols=49 Identities=14% Similarity=0.104 Sum_probs=31.0
Q ss_pred EecCCCHHHHHHHHHhCCCCceEecc--ccC-cccccHHHHHHHHhCCCeEEEec
Q 037019 19 GVSNFSSKKIEALLAFSTIPPSVNQV--EMN-PAWQQRQLREFCKSKSIIVNVFS 70 (175)
Q Consensus 19 GvS~~~~~~i~~~~~~~~~~~~~~q~--~~~-~~~~~~~~~~~~~~~gi~vi~~~ 70 (175)
.++..+++.+..+++.. |+++-+ --. .+...++++++++++||.+..+.
T Consensus 42 ~~~~l~~~~l~~ll~~~---peivliGTG~~~~~~~~~~~~~~l~~~Gi~ve~m~ 93 (117)
T cd05126 42 TSHGLQPEELEELLEEG---VEVIVIGTGQSGALKVPPETVEKLEKRGVEVLVLP 93 (117)
T ss_pred CcccCCHHHHHHHHhcC---CCEEEEcCCCCccccCCHHHHHHHHhcCCEEEEcC
Confidence 34456788888887653 444433 222 22345778888888888888753
No 150
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=30.03 E-value=2e+02 Score=22.18 Aligned_cols=50 Identities=18% Similarity=0.090 Sum_probs=29.8
Q ss_pred HHHHHHHHHhCCCCceEec-----cccCccccc-----------HHHHHHHHhCCCeEEEecCCCC
Q 037019 25 SKKIEALLAFSTIPPSVNQ-----VEMNPAWQQ-----------RQLREFCKSKSIIVNVFSPLGA 74 (175)
Q Consensus 25 ~~~i~~~~~~~~~~~~~~q-----~~~~~~~~~-----------~~~~~~~~~~gi~vi~~~~l~~ 74 (175)
.+.+.+.++..++.+..+. ..+|++..+ ...+++|+..|...+...|...
T Consensus 49 ~~~l~~~~~~~gl~v~s~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~i~~a~~lGa~~i~~~~~~~ 114 (275)
T PRK09856 49 IKQIKALAQTYQMPIIGYTPETNGYPYNMMLGDEHMRRESLDMIKLAMDMAKEMNAGYTLISAAHA 114 (275)
T ss_pred HHHHHHHHHHcCCeEEEecCcccCcCccccCCCHHHHHHHHHHHHHHHHHHHHhCCCEEEEcCCCC
Confidence 4556666777766554433 234433221 3567888888888887766533
No 151
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=29.97 E-value=2.5e+02 Score=21.27 Aligned_cols=129 Identities=13% Similarity=0.078 Sum_probs=69.5
Q ss_pred HHHHHHcCCccEEEecCCCHHHHHHHHHhC-CCCceEeccccCcccccHHHHHHHHhCCCe-EEEecCCCCCCCCCCCcc
Q 037019 6 MEVCQRLGLTKFIGVSNFSSKKIEALLAFS-TIPPSVNQVEMNPAWQQRQLREFCKSKSII-VNVFSPLGAVGSCWGTNQ 83 (175)
Q Consensus 6 l~~l~~~GkIr~iGvS~~~~~~i~~~~~~~-~~~~~~~q~~~~~~~~~~~~~~~~~~~gi~-vi~~~~l~~~G~l~~~~~ 83 (175)
|..|.+. ++-.| +-+.+.+...++.+.. ...+.++|+.++--.....+-..+++++.. ++. - | .
T Consensus 4 ~~~l~~~-~~~~v-~r~~~~~~~~~~~~a~~~gGi~~iEvt~~~~~~~~~i~~l~~~~~~~~~iG-----a-G------T 69 (206)
T PRK09140 4 MQPFTKL-PLIAI-LRGITPDEALAHVGALIEAGFRAIEIPLNSPDPFDSIAALVKALGDRALIG-----A-G------T 69 (206)
T ss_pred hhHHHhC-CEEEE-EeCCCHHHHHHHHHHHHHCCCCEEEEeCCCccHHHHHHHHHHHcCCCcEEe-----E-E------e
Confidence 4444444 44444 5556777766554422 235688999887655445677777777642 222 2 2 1
Q ss_pred ccChHHHHHHHHHhC----CCH--HHHHHHHHHhCCcEEEecCCCHHHHHHhhccc-Cc-------ccCHHHHHHHhccC
Q 037019 84 VMNNEALKQIADAHG----ETV--AQVCLRWIIEQGAIVIAKSFNKERLKENLDIF-DW-------ALTDHDYDRINQIP 149 (175)
Q Consensus 84 ~~~~~~l~~~a~~~g----~~~--~q~al~~~l~~~~~~i~G~~~~~~l~enl~a~-~~-------~L~~~~~~~i~~~~ 149 (175)
+...+.+ +.+.+.| .+| ..-.+++....+..+++|+.+++++.+..+.- +. .+..+.++.+....
T Consensus 70 V~~~~~~-~~a~~aGA~fivsp~~~~~v~~~~~~~~~~~~~G~~t~~E~~~A~~~Gad~vk~Fpa~~~G~~~l~~l~~~~ 148 (206)
T PRK09140 70 VLSPEQV-DRLADAGGRLIVTPNTDPEVIRRAVALGMVVMPGVATPTEAFAALRAGAQALKLFPASQLGPAGIKALRAVL 148 (206)
T ss_pred cCCHHHH-HHHHHcCCCEEECCCCCHHHHHHHHHCCCcEEcccCCHHHHHHHHHcCCCEEEECCCCCCCHHHHHHHHhhc
Confidence 2222222 2222322 222 22344555566778888899988888776441 11 34455555555444
No 152
>TIGR00221 nagA N-acetylglucosamine-6-phosphate deacetylase.
Probab=29.88 E-value=1.7e+02 Score=24.52 Aligned_cols=34 Identities=15% Similarity=0.145 Sum_probs=29.9
Q ss_pred HHHHHHHHHHcCCccEEEecCCCHHHHHHHHHhC
Q 037019 2 LWEAMEVCQRLGLTKFIGVSNFSSKKIEALLAFS 35 (175)
Q Consensus 2 ~~~~l~~l~~~GkIr~iGvS~~~~~~i~~~~~~~ 35 (175)
..+..+.++++|.+-++|=|+-+.+++.++.+..
T Consensus 179 ~~~~i~~l~~~gi~vs~GHs~A~~~~~~~a~~~G 212 (380)
T TIGR00221 179 HFELIRHLKDAGIIVSAGHTNATYELAKAAFKAG 212 (380)
T ss_pred hHHHHHHHHHCCeEEEeeCCCCCHHHHHHHHHcC
Confidence 4578899999999999999999999999988654
No 153
>PF09012 FeoC: FeoC like transcriptional regulator; InterPro: IPR015102 This entry contains several transcriptional regulators, including FeoC, which contain a HTH motif. FeoC acts as a [Fe-S] dependent transcriptional repressor []. ; PDB: 1XN7_A 2K02_A.
Probab=29.84 E-value=43 Score=20.38 Aligned_cols=20 Identities=20% Similarity=0.267 Sum_probs=15.8
Q ss_pred HHHHHHHHcCCccEEEecCC
Q 037019 4 EAMEVCQRLGLTKFIGVSNF 23 (175)
Q Consensus 4 ~~l~~l~~~GkIr~iGvS~~ 23 (175)
..|+.++++|+|+.+..++.
T Consensus 33 ~mL~~l~~kG~I~~~~~~~~ 52 (69)
T PF09012_consen 33 AMLEQLIRKGYIRKVDMSSC 52 (69)
T ss_dssp HHHHHHHCCTSCEEEEEE--
T ss_pred HHHHHHHHCCcEEEecCCCC
Confidence 56889999999999987765
No 154
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=29.81 E-value=3.2e+02 Score=22.49 Aligned_cols=16 Identities=6% Similarity=0.158 Sum_probs=6.7
Q ss_pred HHHHhCCCeEEEecCC
Q 037019 57 EFCKSKSIIVNVFSPL 72 (175)
Q Consensus 57 ~~~~~~gi~vi~~~~l 72 (175)
+.++++|+.+.....+
T Consensus 148 ~~l~~~g~~v~i~~vv 163 (378)
T PRK05301 148 RLVKAHGYPLTLNAVI 163 (378)
T ss_pred HHHHHCCCceEEEEEe
Confidence 3344444444443333
No 155
>PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=29.36 E-value=3.5e+02 Score=22.91 Aligned_cols=59 Identities=12% Similarity=0.058 Sum_probs=36.3
Q ss_pred ccEEEecCCCHHHHHHHHHhCCCCceEeccccCcccc--c-HHHHHHHHhCCCeEEEecCCCC
Q 037019 15 TKFIGVSNFSSKKIEALLAFSTIPPSVNQVEMNPAWQ--Q-RQLREFCKSKSIIVNVFSPLGA 74 (175)
Q Consensus 15 Ir~iGvS~~~~~~i~~~~~~~~~~~~~~q~~~~~~~~--~-~~~~~~~~~~gi~vi~~~~l~~ 74 (175)
++-+-+...+++.+++.+.. +.+..++...-|+.-. + .++.+.|+++|+.++.=...+.
T Consensus 129 v~v~~vd~~d~e~l~~ai~~-~tklV~l~sp~NPtG~v~di~~I~~la~~~gi~vIvD~t~a~ 190 (431)
T PRK08248 129 ITVKFVDPSDPENFEAAITD-KTKALFAETIGNPKGDVLDIEAVAAIAHEHGIPLIVDNTFAS 190 (431)
T ss_pred EEEEEECCCCHHHHHHhcCC-CCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEeCCCCc
Confidence 33334444567777776643 3445555545554322 2 6799999999998887766653
No 156
>cd03325 D-galactonate_dehydratase D-galactonate dehydratase catalyses the dehydration of galactonate to 2-keto-3-deoxygalactnate (KDGal), as part of the D-galactonate nonphosphorolytic catabolic Entner-Doudoroff pathway. D-galactonate dehydratase belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=29.24 E-value=2.6e+02 Score=22.84 Aligned_cols=66 Identities=14% Similarity=0.114 Sum_probs=44.6
Q ss_pred HHHHHHHHHcCCcc-EEEecCCCHHHHHHHHHhCCCCceEeccccCccc---ccHHHHHHHHhCCCeEEEec
Q 037019 3 WEAMEVCQRLGLTK-FIGVSNFSSKKIEALLAFSTIPPSVNQVEMNPAW---QQRQLREFCKSKSIIVNVFS 70 (175)
Q Consensus 3 ~~~l~~l~~~GkIr-~iGvS~~~~~~i~~~~~~~~~~~~~~q~~~~~~~---~~~~~~~~~~~~gi~vi~~~ 70 (175)
++.+.+|+++.-|. +.|=|-+++..+..+++.. -++++|.....+- ....+.++|+++|+.++...
T Consensus 216 ~~~~~~L~~~~~~pia~dEs~~~~~~~~~~~~~~--~~d~v~~d~~~~GGit~~~~~~~lA~~~gi~~~~h~ 285 (352)
T cd03325 216 VEALAEIAARTTIPIATGERLFSRWDFKELLEDG--AVDIIQPDISHAGGITELKKIAAMAEAYDVALAPHC 285 (352)
T ss_pred HHHHHHHHHhCCCCEEecccccCHHHHHHHHHhC--CCCEEecCccccCCHHHHHHHHHHHHHcCCcEeccC
Confidence 56777887775554 4555667888888887653 3567777655432 23678888899998887644
No 157
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=29.05 E-value=2.7e+02 Score=25.10 Aligned_cols=89 Identities=16% Similarity=0.066 Sum_probs=57.4
Q ss_pred cCCccEEEecCCCHHHHHHHHHhCCCCceEeccccCcccccHHHHHHHHhC--CCeEEEecCCCCCCCCCCCccccChHH
Q 037019 12 LGLTKFIGVSNFSSKKIEALLAFSTIPPSVNQVEMNPAWQQRQLREFCKSK--SIIVNVFSPLGAVGSCWGTNQVMNNEA 89 (175)
Q Consensus 12 ~GkIr~iGvS~~~~~~i~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~--gi~vi~~~~l~~~G~l~~~~~~~~~~~ 89 (175)
.|++-+-+. ++...+-.++.....++.++-.-|-++...++++.+.+.+ |+.++--.-=. | ....
T Consensus 28 dg~~~~k~~--~s~~rllrli~~~kpDIvAvDnvyEL~~~~~~li~il~~lP~~tkLVQVTg~~--g---------~~~s 94 (652)
T COG2433 28 DGEIVEKGE--VSLRRLLRLIWSYKPDIVAVDNVYELGADKRDLIRILKRLPEGTKLVQVTGRP--G---------EQES 94 (652)
T ss_pred cCcEEeehh--hhHHHHHHHHHhcCCCEEEeccHHHHhcChhHHHHHHHhCCCCceEEEEeCCC--C---------Ccch
Confidence 455555444 6677777777777667777777888888888899888876 33333211111 1 2356
Q ss_pred HHHHHHHhCC------CHH--HHHHHHHHhCC
Q 037019 90 LKQIADAHGE------TVA--QVCLRWIIEQG 113 (175)
Q Consensus 90 l~~~a~~~g~------~~~--q~al~~~l~~~ 113 (175)
+.++|++||. +|. .-+++.+.+++
T Consensus 95 L~~lArr~G~~~~~~~~P~eeA~~~A~LA~~G 126 (652)
T COG2433 95 LWELARRHGIRVNGKLNPYEEAYACARLASKG 126 (652)
T ss_pred HHHHHHHhCCCCCCCCChHHHHHHHHHHHhcC
Confidence 8899999974 443 45666777776
No 158
>PRK13505 formate--tetrahydrofolate ligase; Provisional
Probab=28.93 E-value=1.9e+02 Score=25.75 Aligned_cols=47 Identities=13% Similarity=0.119 Sum_probs=32.7
Q ss_pred HHHHHHhCCCCceEeccccCcccc-c-HHHHHHHHhCCCeEEEecCCCC
Q 037019 28 IEALLAFSTIPPSVNQVEMNPAWQ-Q-RQLREFCKSKSIIVNVFSPLGA 74 (175)
Q Consensus 28 i~~~~~~~~~~~~~~q~~~~~~~~-~-~~~~~~~~~~gi~vi~~~~l~~ 74 (175)
..+.++..++++.+.-+.|..-.. + ..+.++|+++|+.++.....+.
T Consensus 364 HIenvr~FGvPvVVAINKFd~DTe~Ei~~I~~~c~e~Gv~va~~~~~~~ 412 (557)
T PRK13505 364 HIENIRKFGVPVVVAINKFVTDTDAEIAALKELCEELGVEVALSEVWAK 412 (557)
T ss_pred HHHHHHHcCCCEEEEEeCCCCCCHHHHHHHHHHHHHcCCCEEEeccccc
Confidence 334455667777666666655333 2 4599999999999997777776
No 159
>TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme. This clade is a member of a subfamily (TIGR00089) and spans low GC Gram positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium.
Probab=28.90 E-value=3.5e+02 Score=22.66 Aligned_cols=121 Identities=16% Similarity=0.215 Sum_probs=57.4
Q ss_pred HHHHHHHHHHcCCccEEEecC-----CC-----HHHHHHHHHhC-CCC-ce-EeccccCcccccHHHHHHHHhCC-CeEE
Q 037019 2 LWEAMEVCQRLGLTKFIGVSN-----FS-----SKKIEALLAFS-TIP-PS-VNQVEMNPAWQQRQLREFCKSKS-IIVN 67 (175)
Q Consensus 2 ~~~~l~~l~~~GkIr~iGvS~-----~~-----~~~i~~~~~~~-~~~-~~-~~q~~~~~~~~~~~~~~~~~~~g-i~vi 67 (175)
+++.++.++++| ++.|-+.+ |. ...+.++++.. ..+ .. +.....++..-+.++++..++.| +-..
T Consensus 172 I~~Ei~~l~~~g-~~ei~l~~~~~~~y~~d~~~~~~l~~Ll~~l~~~~~~~~ir~~~~~p~~~~~ell~~m~~~~~~~~~ 250 (414)
T TIGR01579 172 ILKQVKILVAKG-YKEIVLTGVNLGSYGDDLKNGTSLAKLLEQILQIPGIKRIRLSSIDPEDIDEELLEAIASEKRLCPH 250 (414)
T ss_pred HHHHHHHHHHCC-CceEEEeeEccchhccCCCCCCcHHHHHHHHhcCCCCcEEEEeCCChhhCCHHHHHHHHhcCccCCC
Confidence 567788888886 66665432 22 11233333221 111 11 11111223233578899888764 2112
Q ss_pred EecCCCCCCCCCCCccccChHHHHHHHHHhCCCHHHHHHHHHHh--CC----cEEEec--CCCHHHHHHhhccc
Q 037019 68 VFSPLGAVGSCWGTNQVMNNEALKQIADAHGETVAQVCLRWIIE--QG----AIVIAK--SFNKERLKENLDIF 133 (175)
Q Consensus 68 ~~~~l~~~G~l~~~~~~~~~~~l~~~a~~~g~~~~q~al~~~l~--~~----~~~i~G--~~~~~~l~enl~a~ 133 (175)
..-++-. + ..+.|+.+-+.+......-+++.+.+ .+ ...|+| .-+.+.+++.++.+
T Consensus 251 l~lglES-----g-----s~~vLk~m~R~~~~~~~~~~v~~l~~~~~gi~i~~~~IvG~PgET~ed~~~tl~~i 314 (414)
T TIGR01579 251 LHLSLQS-----G-----SDRVLKRMRRKYTRDDFLKLVNKLRSVRPDYAFGTDIIVGFPGESEEDFQETLRMV 314 (414)
T ss_pred eEECCCc-----C-----ChHHHHhcCCCCCHHHHHHHHHHHHHhCCCCeeeeeEEEECCCCCHHHHHHHHHHH
Confidence 2222222 1 23444444444433344455555555 33 445666 35677777666554
No 160
>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....
Probab=28.67 E-value=2.3e+02 Score=23.73 Aligned_cols=74 Identities=15% Similarity=0.067 Sum_probs=51.1
Q ss_pred HHHHHHHHHcCCccEEEecCCCHHHHHHHHHhCCCCceEeccccCccccc---HHHHHHHHhCC-CeEEEecCCCCCCCC
Q 037019 3 WEAMEVCQRLGLTKFIGVSNFSSKKIEALLAFSTIPPSVNQVEMNPAWQQ---RQLREFCKSKS-IIVNVFSPLGAVGSC 78 (175)
Q Consensus 3 ~~~l~~l~~~GkIr~iGvS~~~~~~i~~~~~~~~~~~~~~q~~~~~~~~~---~~~~~~~~~~g-i~vi~~~~l~~~G~l 78 (175)
...++++....-|...=+...+.+.+++.++. ..+..++..+-|+...- ..+.+.|+++| +.++.=..++. +++
T Consensus 108 ~~~~~~~l~~~gv~v~~~d~~d~~~l~~~l~~-~t~~v~~EspsNP~l~v~Dl~~i~~~a~~~g~~~~vVDnT~at-p~~ 185 (386)
T PF01053_consen 108 YRLLEELLPRFGVEVTFVDPTDLEALEAALRP-NTKLVFLESPSNPTLEVPDLEAIAKLAKEHGDILVVVDNTFAT-PYN 185 (386)
T ss_dssp HHHHHHCHHHTTSEEEEESTTSHHHHHHHHCT-TEEEEEEESSBTTTTB---HHHHHHHHHHTTT-EEEEECTTTH-TTT
T ss_pred hhhhhhhhcccCcEEEEeCchhHHHHHhhccc-cceEEEEEcCCCcccccccHHHHHHHHHHhCCceEEeeccccc-eee
Confidence 34455544444444433444578888888765 45678888888877553 67999999999 99999999988 654
No 161
>PRK02901 O-succinylbenzoate synthase; Provisional
Probab=28.61 E-value=2.7e+02 Score=22.77 Aligned_cols=69 Identities=14% Similarity=0.030 Sum_probs=38.6
Q ss_pred HHHHHHHHcCCcc-EEEecCCCHHHHHHHHHhCCCCceEeccccCcccccHHHHHHHHhCCCeEEEecCCCC
Q 037019 4 EAMEVCQRLGLTK-FIGVSNFSSKKIEALLAFSTIPPSVNQVEMNPAWQQRQLREFCKSKSIIVNVFSPLGA 74 (175)
Q Consensus 4 ~~l~~l~~~GkIr-~iGvS~~~~~~i~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~gi~vi~~~~l~~ 74 (175)
+.|.+++++-.|. +.|=|-++...+..+++.. ..+++|+....+-.-.++++.|+++||.++..+.+.+
T Consensus 174 ~~la~Lr~~~~vPIA~DEs~~~~~d~~~l~~~~--a~dvi~ik~~~~GGit~~lkiA~~~gi~v~v~s~~es 243 (327)
T PRK02901 174 EELAELRRRVGVPIAADESIRRAEDPLRVARAG--AADVAVLKVAPLGGVRAALDIAEQIGLPVVVSSALDT 243 (327)
T ss_pred HHHHHHHHhCCCCEEeCCCCCCHHHHHHHHHcC--CCCEEEeCcchhCCHHHHHHHHHHcCCcEEEeCCccc
Confidence 4455555542222 3333445666666665543 3456666655544445666777777877777655544
No 162
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=28.52 E-value=38 Score=26.32 Aligned_cols=55 Identities=18% Similarity=0.305 Sum_probs=38.7
Q ss_pred HHcCCccEEEecC-CCHHHHHHHHHhCCCCceEeccccCcccccHHHHHHHHhC-CCeEEE
Q 037019 10 QRLGLTKFIGVSN-FSSKKIEALLAFSTIPPSVNQVEMNPAWQQRQLREFCKSK-SIIVNV 68 (175)
Q Consensus 10 ~~~GkIr~iGvS~-~~~~~i~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~-gi~vi~ 68 (175)
+.-.||.|+|.++ .++..+..+....+ .+.-++|++ ..-++++..|+++ +|.+|.
T Consensus 72 k~gskVLYLGAasGTTVSHvSDIvg~~G---~VYaVEfs~-r~~rdL~~la~~R~NIiPIl 128 (229)
T PF01269_consen 72 KPGSKVLYLGAASGTTVSHVSDIVGPDG---VVYAVEFSP-RSMRDLLNLAKKRPNIIPIL 128 (229)
T ss_dssp -TT-EEEEETTTTSHHHHHHHHHHTTTS---EEEEEESSH-HHHHHHHHHHHHSTTEEEEE
T ss_pred CCCCEEEEecccCCCccchhhhccCCCC---cEEEEEecc-hhHHHHHHHhccCCceeeee
Confidence 4445999999855 88999888886443 577778764 2236788999875 666665
No 163
>PF13518 HTH_28: Helix-turn-helix domain
Probab=28.47 E-value=83 Score=17.38 Aligned_cols=22 Identities=32% Similarity=0.643 Sum_probs=15.9
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHh
Q 037019 89 ALKQIADAHGETVAQVCLRWIIE 111 (175)
Q Consensus 89 ~l~~~a~~~g~~~~q~al~~~l~ 111 (175)
.+.++|+++|++..++ .+|+-.
T Consensus 14 s~~~~a~~~gis~~tv-~~w~~~ 35 (52)
T PF13518_consen 14 SVREIAREFGISRSTV-YRWIKR 35 (52)
T ss_pred CHHHHHHHHCCCHhHH-HHHHHH
Confidence 4667888899988665 677644
No 164
>cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis. This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life.
Probab=28.35 E-value=3.3e+02 Score=22.25 Aligned_cols=54 Identities=11% Similarity=0.118 Sum_probs=36.4
Q ss_pred CCHHHHHHHHHhCCCCceEeccccCcccc--c-HHHHHHHHhCCCeEEEecCCCCCCCC
Q 037019 23 FSSKKIEALLAFSTIPPSVNQVEMNPAWQ--Q-RQLREFCKSKSIIVNVFSPLGAVGSC 78 (175)
Q Consensus 23 ~~~~~i~~~~~~~~~~~~~~q~~~~~~~~--~-~~~~~~~~~~gi~vi~~~~l~~~G~l 78 (175)
-+++.+++.++. +.+..++....|+.-. + +++.+.|+++|+.++.-...+. |.+
T Consensus 113 ~d~~~l~~~i~~-~~~~v~~e~~~np~g~~~dl~~i~~la~~~g~~livD~t~~~-~~~ 169 (369)
T cd00614 113 DDPEALEAAIKP-ETKLVYVESPTNPTLKVVDIEAIAELAHEHGALLVVDNTFAT-PYL 169 (369)
T ss_pred CCHHHHHHhcCC-CCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCcc-hhc
Confidence 346677666643 3455666666665432 2 6899999999999988877765 543
No 165
>COG3454 Metal-dependent hydrolase involved in phosphonate metabolism [Inorganic ion transport and metabolism]
Probab=27.89 E-value=41 Score=27.78 Aligned_cols=67 Identities=9% Similarity=0.147 Sum_probs=40.7
Q ss_pred HHHHHHHHHHcCCccEEEecCCCHHH-----HHHHHHhCCCCceE--------------eccccCcccccHHHHHHHHhC
Q 037019 2 LWEAMEVCQRLGLTKFIGVSNFSSKK-----IEALLAFSTIPPSV--------------NQVEMNPAWQQRQLREFCKSK 62 (175)
Q Consensus 2 ~~~~l~~l~~~GkIr~iGvS~~~~~~-----i~~~~~~~~~~~~~--------------~q~~~~~~~~~~~~~~~~~~~ 62 (175)
+++.++++.+.+.++-|.+-.|+|-+ +++..+....+-.. .+-+|+. .....+.+.|+++
T Consensus 144 ~l~~~e~~~~~p~v~LiSlMDH~PGQrQf~~le~Y~~yy~~k~~~s~~e~~~~i~~r~a~~~~y~~-~~r~~i~~~c~~r 222 (377)
T COG3454 144 TLPLFEDLMDHPRVKLISLMDHTPGQRQFANLEKYREYYQGKRGLSDEEFAEFIEERQALSARYSD-PNRQAIAALCRER 222 (377)
T ss_pred HHHHHHHHhcCCCeeEEEecCCCCCcchhhhHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhccc-chHHHHHHHHHHc
Confidence 67889999999999999999987655 22222222111111 1111110 0115699999999
Q ss_pred CCeEEEe
Q 037019 63 SIIVNVF 69 (175)
Q Consensus 63 gi~vi~~ 69 (175)
||.+-..
T Consensus 223 gI~lASH 229 (377)
T COG3454 223 GIALASH 229 (377)
T ss_pred CCceecC
Confidence 9877654
No 166
>COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]
Probab=27.48 E-value=2.6e+02 Score=23.59 Aligned_cols=68 Identities=13% Similarity=0.167 Sum_probs=39.9
Q ss_pred HHHHHHc-C-CccEEEecC---CCHHHHHHHHHhCCCCceE-eccccCccccc--HHHHHHHHhCCCeEEEecCCCC
Q 037019 6 MEVCQRL-G-LTKFIGVSN---FSSKKIEALLAFSTIPPSV-NQVEMNPAWQQ--RQLREFCKSKSIIVNVFSPLGA 74 (175)
Q Consensus 6 l~~l~~~-G-kIr~iGvS~---~~~~~i~~~~~~~~~~~~~-~q~~~~~~~~~--~~~~~~~~~~gi~vi~~~~l~~ 74 (175)
++++.++ | +|+.+.+.. ...+.++..+.. +.++.+ .++....-... .++.+.|+++|+-++.=..-+-
T Consensus 128 w~~~~~~~Ga~v~~i~~~~~g~~~~~~~~~~i~~-~Tklvais~vSn~tG~~~pv~~I~~la~~~ga~v~VDaaq~~ 203 (405)
T COG0520 128 WQELAKRTGAKVRVIPLDDDGLLDLDALEKLITP-KTKLVALSHVSNVTGTVNPVKEIAELAHEHGALVLVDAAQAA 203 (405)
T ss_pred HHHHHHhcCcEEEEEecCCCCCcCHHHHHHhcCC-CceEEEEECccccccccchHHHHHHHHHHcCCEEEEECcccc
Confidence 4455554 6 699999863 355666664432 233433 33333333322 7899999999877766555544
No 167
>PLN00191 enolase
Probab=27.39 E-value=3.5e+02 Score=23.39 Aligned_cols=67 Identities=12% Similarity=0.078 Sum_probs=49.1
Q ss_pred HHHHHHHHHHcCCccEEE--ecCCCHHHHHHHHHhCCCCceEeccccCcccc---cHHHHHHHHhCCCeEEEec
Q 037019 2 LWEAMEVCQRLGLTKFIG--VSNFSSKKIEALLAFSTIPPSVNQVEMNPAWQ---QRQLREFCKSKSIIVNVFS 70 (175)
Q Consensus 2 ~~~~l~~l~~~GkIr~iG--vS~~~~~~i~~~~~~~~~~~~~~q~~~~~~~~---~~~~~~~~~~~gi~vi~~~ 70 (175)
-|+.+.+|.++.+|.-.| ....++..+.++++.. -.+++++..+-.-. ..++.++|+++|+.++...
T Consensus 324 D~eg~~~Lt~~~~ipIvgDE~~vtn~~~l~~~I~~~--aad~i~iKl~qiGGITea~~~a~lA~~~G~~~~ish 395 (457)
T PLN00191 324 DWEHWAKLTSLEDVQIVGDDLLVTNPKRVAKAIQEK--ACNALLLKVNQIGTVTESIEAVKMSKAAGWGVMTSH 395 (457)
T ss_pred cHHHHHHHHccCCCcEEccCcccCCHHHHHHHHHhC--CCCEEEecccccCCHHHHHHHHHHHHHCCCEEEeCC
Confidence 478889999988888777 2236688888888764 34667776664432 3679999999999998744
No 168
>PRK14338 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=27.25 E-value=4e+02 Score=22.82 Aligned_cols=120 Identities=18% Similarity=0.253 Sum_probs=54.7
Q ss_pred HHHHHHHHHHcCCccEEEecC-----C-----CHHHHHHHHHhCCCCceEeccc---cCcccccHHHHHHHHhCC--CeE
Q 037019 2 LWEAMEVCQRLGLTKFIGVSN-----F-----SSKKIEALLAFSTIPPSVNQVE---MNPAWQQRQLREFCKSKS--IIV 66 (175)
Q Consensus 2 ~~~~l~~l~~~GkIr~iGvS~-----~-----~~~~i~~~~~~~~~~~~~~q~~---~~~~~~~~~~~~~~~~~g--i~v 66 (175)
+++.++.+.++| ++.|-+++ | +...+..+++...-.+...-+. .++..-..++++..++.+ +..
T Consensus 189 Il~ei~~l~~~G-~keI~l~g~~~~~yG~d~~~~~~l~~Ll~~l~~~~gi~~ir~~~~~p~~i~~ell~~l~~~~~~~~~ 267 (459)
T PRK14338 189 IVEEVRRIAARG-AKEITLLGQIVDSYGHDLPGRPDLADLLEAVHEIPGLERLRFLTSHPAWMTDRLIHAVARLPKCCPH 267 (459)
T ss_pred HHHHHHHHHHCC-CeEEEEeeecCCCcccccCChHHHHHHHHHHHhcCCcceEEEEecChhhcCHHHHHHHhcccccccc
Confidence 567778888887 56665443 2 1223444433221001111111 233334577888887754 222
Q ss_pred EEecCCCCCCCCCCCccccChHHHHHHHHHhCCCHHHHHHHHHHhC--C----cEEEec--CCCHHHHHHhhccc
Q 037019 67 NVFSPLGAVGSCWGTNQVMNNEALKQIADAHGETVAQVCLRWIIEQ--G----AIVIAK--SFNKERLKENLDIF 133 (175)
Q Consensus 67 i~~~~l~~~G~l~~~~~~~~~~~l~~~a~~~g~~~~q~al~~~l~~--~----~~~i~G--~~~~~~l~enl~a~ 133 (175)
+. -++-. + ..+.++.+-+.+......-+++.+... + ...|+| .-+.+++++.++.+
T Consensus 268 v~-lglQS-----g-----sd~vLk~m~R~~t~e~~~~~i~~lr~~~pgi~i~~d~IvG~PgET~ed~~~ti~~l 331 (459)
T PRK14338 268 IN-LPVQA-----G-----DDEVLKRMRRGYTVARYRELIARIREAIPDVSLTTDIIVGHPGETEEQFQRTYDLL 331 (459)
T ss_pred ee-cCccc-----C-----CHHHHHhccCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEECCCCCHHHHHHHHHHH
Confidence 21 12211 1 234444444333333334455555544 2 234555 34666666666554
No 169
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=27.20 E-value=3e+02 Score=21.31 Aligned_cols=70 Identities=14% Similarity=0.204 Sum_probs=44.6
Q ss_pred HHHHHHHHHcCC-ccEEEecCC------CHHHHHHHHHhC---CCCceEeccccCcccc----c---HHHHHHHHhCC--
Q 037019 3 WEAMEVCQRLGL-TKFIGVSNF------SSKKIEALLAFS---TIPPSVNQVEMNPAWQ----Q---RQLREFCKSKS-- 63 (175)
Q Consensus 3 ~~~l~~l~~~Gk-Ir~iGvS~~------~~~~i~~~~~~~---~~~~~~~q~~~~~~~~----~---~~~~~~~~~~g-- 63 (175)
++.++++++.|. |-.||+-.| +++.+...++.. +.++.+..+.+..... . ..+++.|.++.
T Consensus 139 ~~~v~~l~~~g~~iDgiGlQ~H~~~~~~~~~~~~~~l~~~~~~g~pi~iTE~dv~~~~~~~~qA~~~~~~l~~~~~~p~v 218 (254)
T smart00633 139 YELVKKLKAKGVPIDGIGLQSHLSLGSPNIAEIRAALDRFASLGLEIQITELDISGYPNPQAQAADYEEVFKACLAHPAV 218 (254)
T ss_pred HHHHHHHHHCCCccceeeeeeeecCCCCCHHHHHHHHHHHHHcCCceEEEEeecCCCCcHHHHHHHHHHHHHHHHcCCCe
Confidence 567889999988 999998655 566666665432 3445555555543222 1 56888888874
Q ss_pred CeEEEecCC
Q 037019 64 IIVNVFSPL 72 (175)
Q Consensus 64 i~vi~~~~l 72 (175)
.+++.|+-.
T Consensus 219 ~gi~~Wg~~ 227 (254)
T smart00633 219 TGVTVWGVT 227 (254)
T ss_pred eEEEEeCCc
Confidence 566665544
No 170
>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=27.13 E-value=2.7e+02 Score=20.79 Aligned_cols=108 Identities=18% Similarity=0.205 Sum_probs=58.1
Q ss_pred CHHHHHHHHHhCCCCceEeccccCcccccHHHHHHH---HhCCCeEEEecCCCCCCCCCCCccccChHHHHHHHHHhCC-
Q 037019 24 SSKKIEALLAFSTIPPSVNQVEMNPAWQQRQLREFC---KSKSIIVNVFSPLGAVGSCWGTNQVMNNEALKQIADAHGE- 99 (175)
Q Consensus 24 ~~~~i~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~---~~~gi~vi~~~~l~~~G~l~~~~~~~~~~~l~~~a~~~g~- 99 (175)
..+.+++..+..+++...+.+..+.-.-...+...+ ++.|+..++.+.+.. -....++..+|.+.|+
T Consensus 46 ~~e~~~~~A~~lgipl~~i~~~~~~e~~~~~l~~~l~~~~~~g~~~vv~G~i~s---------d~~~~~~e~~~~~~gl~ 116 (194)
T cd01994 46 NHELLELQAEAMGIPLIRIEISGEEEDEVEDLKELLRKLKEEGVDAVVFGAILS---------EYQRTRVERVCERLGLE 116 (194)
T ss_pred CHHHHHHHHHHcCCcEEEEeCCCCchHHHHHHHHHHHHHHHcCCCEEEECcccc---------HHHHHHHHHHHHHcCCE
Confidence 345556666777776665555331101112332222 333788888777765 1245777888888763
Q ss_pred --------CHHHHHHHHHHhCC-cEEEecCCCHHHHHHhhcccCcccCHHHHHH
Q 037019 100 --------TVAQVCLRWIIEQG-AIVIAKSFNKERLKENLDIFDWALTDHDYDR 144 (175)
Q Consensus 100 --------~~~q~al~~~l~~~-~~~i~G~~~~~~l~enl~a~~~~L~~~~~~~ 144 (175)
+..+ .++=.+..+ ..+|+.++. ..|.+ +-++-.++++.++.
T Consensus 117 ~~~PLW~~~~~~-ll~e~~~~g~~~~iv~v~~-~~L~~--~~lG~~~~~~~~~~ 166 (194)
T cd01994 117 PLAPLWGRDQEE-LLREMIEAGFKAIIIKVAA-EGLDE--SWLGREIDEMFIEL 166 (194)
T ss_pred EEecccCCCHHH-HHHHHHHcCCeEEEEEecc-CCCCH--HHCCCCccHhhHHH
Confidence 4444 444455666 445555543 23332 23455777776654
No 171
>TIGR00238 KamA family protein. Note that the E. coli homolog was expressed in E. coli and purified and found not to display display lysine 2,3-aminomutase activity. Active site residues are found in 100 residue extension in B. subtilis. Name changed to KamA family protein.
Probab=27.02 E-value=3.5e+02 Score=22.08 Aligned_cols=22 Identities=9% Similarity=-0.090 Sum_probs=17.8
Q ss_pred HHHHHHHHhCCCeEEEecCCCC
Q 037019 53 RQLREFCKSKSIIVNVFSPLGA 74 (175)
Q Consensus 53 ~~~~~~~~~~gi~vi~~~~l~~ 74 (175)
.+.++.+++.|+.+...+++..
T Consensus 240 ~~ai~~L~~aGi~v~~qtvLl~ 261 (331)
T TIGR00238 240 AEAMKKLRTVNVTLLNQSVLLR 261 (331)
T ss_pred HHHHHHHHHcCCEEEeecceEC
Confidence 4566777888999999998887
No 172
>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases.
Probab=26.65 E-value=2.6e+02 Score=20.50 Aligned_cols=33 Identities=24% Similarity=0.063 Sum_probs=24.0
Q ss_pred HHHHHHHHHHcCCccEEEecCCCHHHHHHHHHhCC
Q 037019 2 LWEAMEVCQRLGLTKFIGVSNFSSKKIEALLAFST 36 (175)
Q Consensus 2 ~~~~l~~l~~~GkIr~iGvS~~~~~~i~~~~~~~~ 36 (175)
+.+.|+.+++. ++-.-+||.+.+.+...++..+
T Consensus 102 ~~~~L~~l~~~--~~~~i~Sn~~~~~~~~~l~~~~ 134 (224)
T TIGR02254 102 AFELMENLQQK--FRLYIVTNGVRETQYKRLRKSG 134 (224)
T ss_pred HHHHHHHHHhc--CcEEEEeCCchHHHHHHHHHCC
Confidence 55677888776 7777788877777777766554
No 173
>TIGR01261 hisB_Nterm histidinol-phosphatase. This model describes histidinol phosphatase. All known examples in the scope of this model are bifunctional proteins with a histidinol phosphatase domain followed by an imidazoleglycerol-phosphate dehydratase domain. These enzymatic domains catalyze the ninth and seventh steps, respectively, of histidine biosynthesis.
Probab=26.49 E-value=2.5e+02 Score=20.19 Aligned_cols=22 Identities=32% Similarity=0.439 Sum_probs=14.3
Q ss_pred CHHHHHHHHHHcCCccEEEecCC
Q 037019 1 GLWEAMEVCQRLGLTKFIGVSNF 23 (175)
Q Consensus 1 e~~~~l~~l~~~GkIr~iGvS~~ 23 (175)
++.+.|+.|+++| ++-.-+||-
T Consensus 33 gv~e~L~~L~~~g-~~l~IvSN~ 54 (161)
T TIGR01261 33 GVIPALLKLKKAG-YKFVMVTNQ 54 (161)
T ss_pred CHHHHHHHHHHCC-CeEEEEeCC
Confidence 3567888888887 444455654
No 174
>PRK15440 L-rhamnonate dehydratase; Provisional
Probab=26.38 E-value=3e+02 Score=23.13 Aligned_cols=65 Identities=11% Similarity=0.067 Sum_probs=45.5
Q ss_pred HHHHHHHHHcCCc--c-EEEecCCCHHHHHHHHHhCCCCceEeccccCccc---ccHHHHHHHHhCCCeEEEe
Q 037019 3 WEAMEVCQRLGLT--K-FIGVSNFSSKKIEALLAFSTIPPSVNQVEMNPAW---QQRQLREFCKSKSIIVNVF 69 (175)
Q Consensus 3 ~~~l~~l~~~GkI--r-~iGvS~~~~~~i~~~~~~~~~~~~~~q~~~~~~~---~~~~~~~~~~~~gi~vi~~ 69 (175)
++.+.+|+++-.+ . ..|=+.++...+..+++.. -.+++|....-+- ....+..+|+.+|+.++..
T Consensus 248 ~~~~~~L~~~~~~~i~ia~gE~~~~~~~~~~li~~~--a~Divq~d~~~~GGit~~~kia~lA~a~gi~~~pH 318 (394)
T PRK15440 248 YWGYRELKRNAPAGMMVTSGEHEATLQGFRTLLEMG--CIDIIQPDVGWCGGLTELVKIAALAKARGQLVVPH 318 (394)
T ss_pred HHHHHHHHHhCCCCCceecCCCccCHHHHHHHHHcC--CCCEEeCCccccCCHHHHHHHHHHHHHcCCeeccc
Confidence 5677888877542 2 3367778888888888754 3577887776543 2367888999999887553
No 175
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=26.29 E-value=1.1e+02 Score=23.40 Aligned_cols=29 Identities=10% Similarity=0.096 Sum_probs=18.9
Q ss_pred HHHHHHHHh---CCCeEEEecCCCCCCCCCCC
Q 037019 53 RQLREFCKS---KSIIVNVFSPLGAVGSCWGT 81 (175)
Q Consensus 53 ~~~~~~~~~---~gi~vi~~~~l~~~G~l~~~ 81 (175)
..++.-+.+ .|=.++.|+|+...|.++.+
T Consensus 121 ~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~ 152 (204)
T PF06080_consen 121 EGLFAGAARLLKPGGLLFLYGPFNRDGKFTSE 152 (204)
T ss_pred HHHHHHHHHhCCCCCEEEEeCCcccCCEeCCc
Confidence 455555543 35568999999876766543
No 176
>PRK10945 gene expression modulator; Provisional
Probab=25.91 E-value=75 Score=19.98 Aligned_cols=33 Identities=12% Similarity=0.270 Sum_probs=28.0
Q ss_pred cCCCHHHHHHhhcccCcccCHHHHHHHhccCCC
Q 037019 119 KSFNKERLKENLDIFDWALTDHDYDRINQIPQH 151 (175)
Q Consensus 119 G~~~~~~l~enl~a~~~~L~~~~~~~i~~~~~~ 151 (175)
.+++.+-|+..++-....|+..|+..+.++...
T Consensus 17 rcss~eTLEkvie~~~~~L~~~E~~~f~~AaDH 49 (72)
T PRK10945 17 RCQTIDTLERVIEKNKYELSDDELAVFYSAADH 49 (72)
T ss_pred hcCcHHHHHHHHHHhhccCCHHHHHHHHHHHHH
Confidence 578889999999999999999999988776553
No 177
>PF05221 AdoHcyase: S-adenosyl-L-homocysteine hydrolase; InterPro: IPR000043 Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase, 3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. This enzyme is ubiquitous, highly conserved, and may play a key role in the regulation of the intracellular concentration of adenosylhomocysteine. AdoHcyase requires NAD+ as a cofactor and contains a central glycine-rich region which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity, 0006730 one-carbon metabolic process; PDB: 3N58_B 3H9U_C 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 1K0U_F 1B3R_A 1XWF_D ....
Probab=25.50 E-value=1.8e+02 Score=23.20 Aligned_cols=54 Identities=17% Similarity=0.052 Sum_probs=35.2
Q ss_pred EEEecCC-CHHH--HHHHHHhCCCCceEeccccCcccccHHHHHHHHhCCCeEEEecCC
Q 037019 17 FIGVSNF-SSKK--IEALLAFSTIPPSVNQVEMNPAWQQRQLREFCKSKSIIVNVFSPL 72 (175)
Q Consensus 17 ~iGvS~~-~~~~--i~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~gi~vi~~~~l 72 (175)
.||+|-| ++.. +.+.+... .-.+.-+..|++..+.++..+..+.||.|++|..-
T Consensus 45 rIa~cLHle~kTA~L~~tL~a~--GAeV~~~~sNplSTQDdvaAAL~~~Gi~V~A~~ge 101 (268)
T PF05221_consen 45 RIAGCLHLEAKTAVLAETLKAL--GAEVRWTGSNPLSTQDDVAAALAEEGIPVFAWKGE 101 (268)
T ss_dssp EEEEES--SHHHHHHHHHHHHT--TEEEEEEESSTTT--HHHHHHHHHTTEEEEE-TT-
T ss_pred EEEEEEechHHHHHHHHHHHHc--CCeEEEecCCCcccchHHHHHhccCCceEEEeCCC
Confidence 6777777 4433 33334444 34666678899999999999999999999998643
No 178
>PRK09454 ugpQ cytoplasmic glycerophosphodiester phosphodiesterase; Provisional
Probab=25.26 E-value=3.2e+02 Score=21.02 Aligned_cols=60 Identities=17% Similarity=0.093 Sum_probs=35.5
Q ss_pred CCccEEEecCCCHHHHHHHHHhCCCCceEe-------------------ccccCcccccHHHHHHHHhCCCeEEEecCC
Q 037019 13 GLTKFIGVSNFSSKKIEALLAFSTIPPSVN-------------------QVEMNPAWQQRQLREFCKSKSIIVNVFSPL 72 (175)
Q Consensus 13 GkIr~iGvS~~~~~~i~~~~~~~~~~~~~~-------------------q~~~~~~~~~~~~~~~~~~~gi~vi~~~~l 72 (175)
+..+.+=+++|+++.+..+.+....-+... .+..+.....+.+++.++++|+.+.+|..-
T Consensus 140 ~~~~~v~v~SF~~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~v~~WTvn 218 (249)
T PRK09454 140 GAAVPPLLSSFSEDALEAARQAAPELPRGLLLDEWPDDWLELTRRLGCVSLHLNHKLLDEARVAALKAAGLRILVYTVN 218 (249)
T ss_pred CCCCCEEEEeCCHHHHHHHHHhCCCCcEEEEeccccccHHHHHHhcCCeEEecccccCCHHHHHHHHHCCCEEEEEeCC
Confidence 444567788899888887776543111111 011111112367888888888888888643
No 179
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=25.24 E-value=2e+02 Score=18.79 Aligned_cols=86 Identities=17% Similarity=0.165 Sum_probs=57.9
Q ss_pred HHHHHHHc-CCccEEEecCCCHHHHHHHHHhCCCC-------------ceEeccccCcccccHHHHHHHHhCCCeEEEec
Q 037019 5 AMEVCQRL-GLTKFIGVSNFSSKKIEALLAFSTIP-------------PSVNQVEMNPAWQQRQLREFCKSKSIIVNVFS 70 (175)
Q Consensus 5 ~l~~l~~~-GkIr~iGvS~~~~~~i~~~~~~~~~~-------------~~~~q~~~~~~~~~~~~~~~~~~~gi~vi~~~ 70 (175)
.+..+.+. ..+.-.|+++-+++..+.+.+..+.+ ++++-+-- +.....++...|-++|+.++.=+
T Consensus 15 ~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~I~t-p~~~h~~~~~~~l~~g~~v~~EK 93 (120)
T PF01408_consen 15 HLRALLRSSPDFEVVAVCDPDPERAEAFAEKYGIPVYTDLEELLADEDVDAVIIAT-PPSSHAEIAKKALEAGKHVLVEK 93 (120)
T ss_dssp HHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTSEEESSHHHHHHHTTESEEEEES-SGGGHHHHHHHHHHTTSEEEEES
T ss_pred HHHHHHhcCCCcEEEEEEeCCHHHHHHHHHHhcccchhHHHHHHHhhcCCEEEEec-CCcchHHHHHHHHHcCCEEEEEc
Confidence 34566666 77888999999999888876665532 11111110 11223679999999999999999
Q ss_pred CCCCCCCCCCCccccChHHHHHHHHHhCC
Q 037019 71 PLGAVGSCWGTNQVMNNEALKQIADAHGE 99 (175)
Q Consensus 71 ~l~~~G~l~~~~~~~~~~~l~~~a~~~g~ 99 (175)
|++. ......++.+.+++.|.
T Consensus 94 P~~~--------~~~~~~~l~~~a~~~~~ 114 (120)
T PF01408_consen 94 PLAL--------TLEEAEELVEAAKEKGV 114 (120)
T ss_dssp SSSS--------SHHHHHHHHHHHHHHTS
T ss_pred CCcC--------CHHHHHHHHHHHHHhCC
Confidence 9976 23345677777777764
No 180
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=24.99 E-value=3e+02 Score=22.65 Aligned_cols=66 Identities=23% Similarity=0.381 Sum_probs=39.8
Q ss_pred HHHHHHHHhCCCeEEEecCCCCCCCCCCCccccChHHHHHHHHHhCCCH---------HHHHHHHHHhCC--cEEEecCC
Q 037019 53 RQLREFCKSKSIIVNVFSPLGAVGSCWGTNQVMNNEALKQIADAHGETV---------AQVCLRWIIEQG--AIVIAKSF 121 (175)
Q Consensus 53 ~~~~~~~~~~gi~vi~~~~l~~~G~l~~~~~~~~~~~l~~~a~~~g~~~---------~q~al~~~l~~~--~~~i~G~~ 121 (175)
..+.++|++.||.+++ +|+.- +.+ ++..++|+.. .--.|+++.+.+ ...-.|++
T Consensus 79 ~~L~~~~~~~Gi~~~s-tpfd~-------------~sv-d~l~~~~v~~~KIaS~~~~n~pLL~~~A~~gkPvilStGma 143 (329)
T TIGR03569 79 RELKEYCESKGIEFLS-TPFDL-------------ESA-DFLEDLGVPRFKIPSGEITNAPLLKKIARFGKPVILSTGMA 143 (329)
T ss_pred HHHHHHHHHhCCcEEE-EeCCH-------------HHH-HHHHhcCCCEEEECcccccCHHHHHHHHhcCCcEEEECCCC
Confidence 6799999999999988 44433 111 2222232211 122455555554 55566888
Q ss_pred CHHHHHHhhccc
Q 037019 122 NKERLKENLDIF 133 (175)
Q Consensus 122 ~~~~l~enl~a~ 133 (175)
+++++++.++.+
T Consensus 144 tl~Ei~~Av~~i 155 (329)
T TIGR03569 144 TLEEIEAAVGVL 155 (329)
T ss_pred CHHHHHHHHHHH
Confidence 888888877665
No 181
>PRK07811 cystathionine gamma-synthase; Provisional
Probab=24.99 E-value=4e+02 Score=22.08 Aligned_cols=51 Identities=14% Similarity=0.066 Sum_probs=35.2
Q ss_pred CCHHHHHHHHHhCCCCceEeccccCccccc---HHHHHHHHhCCCeEEEecCCCC
Q 037019 23 FSSKKIEALLAFSTIPPSVNQVEMNPAWQQ---RQLREFCKSKSIIVNVFSPLGA 74 (175)
Q Consensus 23 ~~~~~i~~~~~~~~~~~~~~q~~~~~~~~~---~~~~~~~~~~gi~vi~~~~l~~ 74 (175)
.+++.+++.+.. +.+..++..+.|+.-.- ..+.+.|+++|+.++.=...+.
T Consensus 134 ~d~e~l~~~i~~-~tklV~ie~p~NPtg~~~dl~~I~~la~~~gi~lIvD~a~a~ 187 (388)
T PRK07811 134 SDLDAVRAAITP-RTKLIWVETPTNPLLSITDIAALAELAHDAGAKVVVDNTFAS 187 (388)
T ss_pred CCHHHHHHhcCc-CCeEEEEECCCCCcceecCHHHHHHHHHHcCCEEEEECCCCc
Confidence 467777766543 34566666677764332 6799999999999987776655
No 182
>PF00563 EAL: EAL domain; InterPro: IPR001633 This domain is found in diverse bacterial signalling proteins. It is called EAL after its conserved residues. The EAL domain is a good candidate for a diguanylate phosphodiesterase function []. The domain contains many conserved acidic residues that could participate in metal binding and might form the phosphodiesterase active site. It often but not always occurs along with IPR000014 from INTERPRO and IPR000160 from INTERPRO domains that are also found in many signalling proteins.; PDB: 3PJU_A 3PJX_A 3PJW_A 3PJT_B 3KZP_B 3U2E_B 3S83_A 2R6O_B 3N3T_B 3GG1_A ....
Probab=24.98 E-value=1.6e+02 Score=21.70 Aligned_cols=60 Identities=22% Similarity=0.263 Sum_probs=35.3
Q ss_pred HHHHHHHHHcCCccEEEecC-----CCHHHHHHHHHhCCCCceEeccccCcc----ccc-----HHHHHHHHhCCCeEEE
Q 037019 3 WEAMEVCQRLGLTKFIGVSN-----FSSKKIEALLAFSTIPPSVNQVEMNPA----WQQ-----RQLREFCKSKSIIVNV 68 (175)
Q Consensus 3 ~~~l~~l~~~GkIr~iGvS~-----~~~~~i~~~~~~~~~~~~~~q~~~~~~----~~~-----~~~~~~~~~~gi~vi~ 68 (175)
.+.+.++++.|- .+++.+ .+.+.+..+ +|+.+-+..+.+ +.. ..++.+++++|+.+++
T Consensus 137 ~~~l~~l~~~G~--~i~ld~~g~~~~~~~~l~~l------~~~~ikld~~~~~~~~~~~~~~~l~~l~~~~~~~~~~via 208 (236)
T PF00563_consen 137 LENLRRLRSLGF--RIALDDFGSGSSSLEYLASL------PPDYIKLDGSLVRDLSDEEAQSLLQSLINLAKSLGIKVIA 208 (236)
T ss_dssp HHHHHHHHHCT---EEEEEEETSTCGCHHHHHHH------CGSEEEEEHHGHTTTTSHHHHHHHHHHHHHHHHTT-EEEE
T ss_pred HHHHHHHHhcCc--eeEeeeccCCcchhhhhhhc------ccccceeecccccccchhhHHHHHHHHHHHhhccccccce
Confidence 467888888885 333443 344443333 345555544444 222 5689999999999998
Q ss_pred ec
Q 037019 69 FS 70 (175)
Q Consensus 69 ~~ 70 (175)
-.
T Consensus 209 ~g 210 (236)
T PF00563_consen 209 EG 210 (236)
T ss_dssp EC
T ss_pred ee
Confidence 43
No 183
>PF13167 GTP-bdg_N: GTP-binding GTPase N-terminal
Probab=24.95 E-value=20 Score=23.83 Aligned_cols=37 Identities=16% Similarity=0.120 Sum_probs=23.3
Q ss_pred cEEEecCCCHHHHHHhhcccC-------cccCHHHHHHHhccCC
Q 037019 114 AIVIAKSFNKERLKENLDIFD-------WALTDHDYDRINQIPQ 150 (175)
Q Consensus 114 ~~~i~G~~~~~~l~enl~a~~-------~~L~~~~~~~i~~~~~ 150 (175)
....+|..+.+.|.+.++..+ -.||+.+...|++...
T Consensus 37 p~~~iG~GK~eei~~~~~~~~~d~vvfd~~Lsp~Q~rNLe~~~~ 80 (95)
T PF13167_consen 37 PKTYIGSGKVEEIKELIEELDADLVVFDNELSPSQQRNLEKALG 80 (95)
T ss_pred cceeechhHHHHHHHHHhhcCCCEEEECCCCCHHHHHHHHHHHC
Confidence 334566666666666665432 2777777777777664
No 184
>PRK08861 cystathionine gamma-synthase; Provisional
Probab=24.88 E-value=4.1e+02 Score=22.17 Aligned_cols=64 Identities=19% Similarity=0.074 Sum_probs=40.2
Q ss_pred cCCccEEEecCCCHHHHHHHHHhCCCCceEeccccCcccc--c-HHHHHHHHhCCCeEEEecCCCCCCC
Q 037019 12 LGLTKFIGVSNFSSKKIEALLAFSTIPPSVNQVEMNPAWQ--Q-RQLREFCKSKSIIVNVFSPLGAVGS 77 (175)
Q Consensus 12 ~GkIr~iGvS~~~~~~i~~~~~~~~~~~~~~q~~~~~~~~--~-~~~~~~~~~~gi~vi~~~~l~~~G~ 77 (175)
.+.++-.-+...+++.+++.+.. +.+..++..+-|+.-. + ..+.+.|+++|+.++.=...+. |.
T Consensus 115 ~~gi~v~~vd~~d~e~l~~~i~~-~tklV~lesP~NPtG~v~dl~~I~~la~~~gi~vIvDea~~~-~~ 181 (388)
T PRK08861 115 KGDFKVQFVDQSDAAALDAALAK-KPKLILLETPSNPLVRVVDIAELCQKAKAVGALVAVDNTFLT-PV 181 (388)
T ss_pred cCCeEEEEECCCCHHHHHHhcCc-CCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCccc-cc
Confidence 33344444445567777666542 3455555556665433 2 6799999999999988777665 54
No 185
>PRK09490 metH B12-dependent methionine synthase; Provisional
Probab=24.85 E-value=4e+02 Score=26.27 Aligned_cols=57 Identities=16% Similarity=0.042 Sum_probs=44.0
Q ss_pred EEecCCCHHHHHHHHHhCCCCceEeccccCccccc-HHHHHHHHhCCCeEEEecCCCC
Q 037019 18 IGVSNFSSKKIEALLAFSTIPPSVNQVEMNPAWQQ-RQLREFCKSKSIIVNVFSPLGA 74 (175)
Q Consensus 18 iGvS~~~~~~i~~~~~~~~~~~~~~q~~~~~~~~~-~~~~~~~~~~gi~vi~~~~l~~ 74 (175)
|-|-++.++.++++++.+..++.+|.+..--.+.. ..+++.|+++|..+|.+.--..
T Consensus 434 lsIDS~~~~ViEaaLk~~~G~~IINSIs~~~~~~~~~~~~~l~~kyga~vV~m~~de~ 491 (1229)
T PRK09490 434 IMIDSSKWEVIEAGLKCIQGKGIVNSISLKEGEEKFIEHARLVRRYGAAVVVMAFDEQ 491 (1229)
T ss_pred EEEeCCcHHHHHHHHhhcCCCCEEEeCCCCCCCccHHHHHHHHHHhCCCEEEEecCCC
Confidence 67788999999999998766777777766433322 5799999999999999875444
No 186
>cd08561 GDPD_cytoplasmic_ScUgpQ2_like Glycerophosphodiester phosphodiesterase domain of Streptomyces coelicolor cytoplasmic phosphodiesterases UgpQ2 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized cytoplasmic phosphodiesterases which predominantly exist in bacteria. The prototype of this family is a putative cytoplasmic phosphodiesterase encoded by gene ulpQ2 (SCO1419) in the Streptomyces coelicolor genome. It is distantly related to the Escherichia coli cytoplasmic phosphodiesterases UgpQ that catalyzes the hydrolysis of glycerophosphodiesters at the inner side of the cytoplasmic membrane to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=24.71 E-value=3.2e+02 Score=20.88 Aligned_cols=67 Identities=12% Similarity=0.175 Sum_probs=40.1
Q ss_pred HHHHHHcCCccEEEecCCCHHHHHHHHHhCCC-C--------------------------ceEeccccCcc---cccHHH
Q 037019 6 MEVCQRLGLTKFIGVSNFSSKKIEALLAFSTI-P--------------------------PSVNQVEMNPA---WQQRQL 55 (175)
Q Consensus 6 l~~l~~~GkIr~iGvS~~~~~~i~~~~~~~~~-~--------------------------~~~~q~~~~~~---~~~~~~ 55 (175)
++.+++.|.-+.+=++.|+.+.+..+.+..+. + ..++.+.++.. ...+++
T Consensus 125 ~~~l~~~~~~~~~~~~Sf~~~~l~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (249)
T cd08561 125 ADLIERYGAQDRVLVASFSDRVLRRFRRLCPRVATSAGEGEVAAFVLASRLGLGSLYSPPYDALQIPVRYGGVPLVTPRF 204 (249)
T ss_pred HHHHHHcCCCCcEEEEECCHHHHHHHHHHCCCcceeccHHHHHHHHHHhhcccccccCCCCcEEEcCcccCCeecCCHHH
Confidence 34444556667777888888887777654431 0 11112222111 123678
Q ss_pred HHHHHhCCCeEEEecCC
Q 037019 56 REFCKSKSIIVNVFSPL 72 (175)
Q Consensus 56 ~~~~~~~gi~vi~~~~l 72 (175)
+..++++|+.+.+|..-
T Consensus 205 v~~~~~~G~~v~vWTVN 221 (249)
T cd08561 205 VRAAHAAGLEVHVWTVN 221 (249)
T ss_pred HHHHHHCCCEEEEEecC
Confidence 88899999999888753
No 187
>PF15632 ATPgrasp_Ter: ATP-grasp in the biosynthetic pathway with Ter operon
Probab=24.64 E-value=1.1e+02 Score=25.06 Aligned_cols=58 Identities=14% Similarity=-0.029 Sum_probs=36.5
Q ss_pred HHHHHHHHHHcCCccEEEecCCCHHHHHHHHHhCCCCceEeccccCccccc---HHHHHHHHhCCCeEEE
Q 037019 2 LWEAMEVCQRLGLTKFIGVSNFSSKKIEALLAFSTIPPSVNQVEMNPAWQQ---RQLREFCKSKSIIVNV 68 (175)
Q Consensus 2 ~~~~l~~l~~~GkIr~iGvS~~~~~~i~~~~~~~~~~~~~~q~~~~~~~~~---~~~~~~~~~~gi~vi~ 68 (175)
+...+..+++.+.++=+|.....-..+..+.+..- ..+- +.+ .-++++|++|+|.++.
T Consensus 11 ~~~~i~~lr~~~~~~i~~sh~~~~~~~~~~aD~~~------~eP~---~~~~yv~~~l~~C~~~~Idv~~ 71 (329)
T PF15632_consen 11 QRDIIRSLRANRDFTIIASHRDPRAPILYAADEAY------LEPA---DGEEYVDWCLDFCKEHGIDVFV 71 (329)
T ss_pred HHHHHHHHHcCCCeEEEEEeCCCCchHHhcCceee------ecCC---CHHHHHHHHHHHHHHhCCeEEE
Confidence 34567777777777777776655555444443321 1111 222 5699999999999886
No 188
>PF00356 LacI: Bacterial regulatory proteins, lacI family; InterPro: IPR000843 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. One such family groups together a range of proteins, including ascG, ccpA, cytR, ebgR, fruR, galR, galS, lacI, malI, opnR, purF, rafR, rbtR and scrR [, ]. Within this family, the HTH motif is situated towards the N terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3KJX_C 1ZAY_A 1VPW_A 2PUA_A 1QQA_A 1PNR_A 1JFT_A 1QP4_A 2PUD_A 1JH9_A ....
Probab=24.39 E-value=1.2e+02 Score=17.01 Aligned_cols=42 Identities=19% Similarity=0.293 Sum_probs=25.9
Q ss_pred HHHHHHHhCCCHHHHHHHHHHhCCcEEEecCCCHHHHHHhhcccCc
Q 037019 90 LKQIADAHGETVAQVCLRWIIEQGAIVIAKSFNKERLKENLDIFDW 135 (175)
Q Consensus 90 l~~~a~~~g~~~~q~al~~~l~~~~~~i~G~~~~~~l~enl~a~~~ 135 (175)
++++|+..|+|.+.++ .+|+.+ .-+...+.+++.+.++.+++
T Consensus 2 i~dIA~~agvS~~TVS--r~ln~~--~~vs~~tr~rI~~~a~~lgY 43 (46)
T PF00356_consen 2 IKDIAREAGVSKSTVS--RVLNGP--PRVSEETRERILEAAEELGY 43 (46)
T ss_dssp HHHHHHHHTSSHHHHH--HHHTTC--SSSTHHHHHHHHHHHHHHTB
T ss_pred HHHHHHHHCcCHHHHH--HHHhCC--CCCCHHHHHHHHHHHHHHCC
Confidence 6789999999998765 455544 23333445555555554443
No 189
>COG2861 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.32 E-value=3.6e+02 Score=21.31 Aligned_cols=17 Identities=12% Similarity=-0.087 Sum_probs=10.0
Q ss_pred HHHhCCCeEEEecCCCC
Q 037019 58 FCKSKSIIVNVFSPLGA 74 (175)
Q Consensus 58 ~~~~~gi~vi~~~~l~~ 74 (175)
.+++.||.++.+..+..
T Consensus 168 iAk~~gVp~~~rdvfLD 184 (250)
T COG2861 168 IAKEIGVPVIKRDVFLD 184 (250)
T ss_pred hHhhcCCceeeeeeeec
Confidence 34566666666665554
No 190
>TIGR01702 CO_DH_cata carbon-monoxide dehydrogenase, catalytic subunit. This model represents the carbon-monoxide dehydrogenase catalytic subunit. This protein is related to prismane (also called hybrid cluster protein), a complex whose activity is not yet fully described; the two share similar sets of ligands to unusual metal-containing clusters.
Probab=24.10 E-value=2.1e+02 Score=25.80 Aligned_cols=23 Identities=22% Similarity=0.182 Sum_probs=17.4
Q ss_pred HHHHHHHHHcCCccEE----EecCCCH
Q 037019 3 WEAMEVCQRLGLTKFI----GVSNFSS 25 (175)
Q Consensus 3 ~~~l~~l~~~GkIr~i----GvS~~~~ 25 (175)
++.|.+++++|+||.+ |.+|-..
T Consensus 419 ~~pLidaIk~G~Irgv~~ivGC~n~k~ 445 (621)
T TIGR01702 419 NKPLVDAIASGKIKGVVLVVGCSNLKN 445 (621)
T ss_pred hHHHHHHHHhCCCceEEEEEeCCCCCC
Confidence 5678999999999986 4555433
No 191
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=23.97 E-value=88 Score=24.18 Aligned_cols=53 Identities=15% Similarity=0.320 Sum_probs=36.8
Q ss_pred HHcCCccEEEecC-CCHHHHHHHHHhCCCCceEeccccCcccccHHHHHHHHhC-CCeEE
Q 037019 10 QRLGLTKFIGVSN-FSSKKIEALLAFSTIPPSVNQVEMNPAWQQRQLREFCKSK-SIIVN 67 (175)
Q Consensus 10 ~~~GkIr~iGvS~-~~~~~i~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~-gi~vi 67 (175)
++--+|.|+|.|+ .+++.+..+.. ...+.-++|++ ..-+++++.|+++ +|.++
T Consensus 75 ~~g~~VLYLGAasGTTvSHVSDIv~----~G~iYaVEfs~-R~~reLl~~a~~R~Ni~PI 129 (231)
T COG1889 75 KEGSKVLYLGAASGTTVSHVSDIVG----EGRIYAVEFSP-RPMRELLDVAEKRPNIIPI 129 (231)
T ss_pred CCCCEEEEeeccCCCcHhHHHhccC----CCcEEEEEecc-hhHHHHHHHHHhCCCceee
Confidence 3456899999877 78888877765 23567777764 2237899999876 45444
No 192
>PHA02128 hypothetical protein
Probab=23.94 E-value=2.5e+02 Score=19.25 Aligned_cols=68 Identities=6% Similarity=0.196 Sum_probs=44.9
Q ss_pred HHHHHHHHHHcCCccEEEecCCCHHHHHHHH-----------------HhCC-CCc-eEeccccCccccc--HHHHHHHH
Q 037019 2 LWEAMEVCQRLGLTKFIGVSNFSSKKIEALL-----------------AFST-IPP-SVNQVEMNPAWQQ--RQLREFCK 60 (175)
Q Consensus 2 ~~~~l~~l~~~GkIr~iGvS~~~~~~i~~~~-----------------~~~~-~~~-~~~q~~~~~~~~~--~~~~~~~~ 60 (175)
.+..-.++..+|-+|-|-+...+...+..+. +.++ ++| ..-..+|.+..+. .++++++-
T Consensus 62 l~~lane~~aqgg~r~itmn~ankrhv~dmv~~~wrgdi~ist~selt~~cp~vkflmideseytltsrh~rqeiydwag 141 (151)
T PHA02128 62 LLHLANEVSAQGGARIITMNSANKRHVQDMVSYQWRGDIRISTISELTDRCPKVKFLMIDESEYTLTSRHQRQEIYDWAG 141 (151)
T ss_pred HHHHHHHHHhcCCeEEEEeccchhhHHHHHhcccccCceEEeeHHHHhccCCeeEEEEEcchhceecchhhHHHHHhhcc
Confidence 3455678899999999998877665555443 2221 111 1223355555543 78999999
Q ss_pred hCCCeEEEe
Q 037019 61 SKSIIVNVF 69 (175)
Q Consensus 61 ~~gi~vi~~ 69 (175)
.|||.++.+
T Consensus 142 thgvefvim 150 (151)
T PHA02128 142 THGVEFVIM 150 (151)
T ss_pred cCceEEEEe
Confidence 999998875
No 193
>cd08583 PI-PLCc_GDPD_SF_unchar1 Uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipaseand Glycerophosphodiester phosphodiesterases. This subfamily corresponds to a group of uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipase C (PI-PLC), and glycerophosphodiester phosphodiesterases (GP-GDE), and also sphingomyelinases D (SMases D) and similar proteins. They hydrolyze the 3'-5' phosphodiester bonds in different substrates, utilizing a similar mechanism of general base and acid catalysis involving two conserved histidine residues.
Probab=23.92 E-value=3.3e+02 Score=20.69 Aligned_cols=22 Identities=14% Similarity=0.173 Sum_probs=14.7
Q ss_pred CccEEEecCCCHHHHHHHHHhC
Q 037019 14 LTKFIGVSNFSSKKIEALLAFS 35 (175)
Q Consensus 14 kIr~iGvS~~~~~~i~~~~~~~ 35 (175)
....+=+++|+...+..+.+..
T Consensus 133 ~~~~v~~~SF~~~~L~~~~~~~ 154 (237)
T cd08583 133 LLDRVIPQIYNEEMYEAIMSIY 154 (237)
T ss_pred ccceeEEEecCHHHHHHHHHhC
Confidence 4445667888888777776554
No 194
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=23.90 E-value=1.6e+02 Score=23.62 Aligned_cols=41 Identities=15% Similarity=0.107 Sum_probs=30.1
Q ss_pred CHHHHHHHHHhCCCCceEeccccCccccc------HHHHHHHHhCCCeEE
Q 037019 24 SSKKIEALLAFSTIPPSVNQVEMNPAWQQ------RQLREFCKSKSIIVN 67 (175)
Q Consensus 24 ~~~~i~~~~~~~~~~~~~~q~~~~~~~~~------~~~~~~~~~~gi~vi 67 (175)
+.+.+.++++. .+.++|++-+-...+ .++.++|+++|+.+=
T Consensus 86 ~~e~i~~Al~~---G~tsVm~d~s~~~~~eni~~t~~v~~~a~~~gv~ve 132 (281)
T PRK06806 86 TFEKIKEALEI---GFTSVMFDGSHLPLEENIQKTKEIVELAKQYGATVE 132 (281)
T ss_pred CHHHHHHHHHc---CCCEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCeEE
Confidence 55666666654 478888888766543 579999999998863
No 195
>PRK14326 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=23.87 E-value=4.9e+02 Score=22.67 Aligned_cols=61 Identities=13% Similarity=0.102 Sum_probs=30.6
Q ss_pred HHHHHHHHHHcCCccEEEe-----cCC-----CHHHHHHHHHhCC-CC-ce-EeccccCcccccHHHHHHHHhCC
Q 037019 2 LWEAMEVCQRLGLTKFIGV-----SNF-----SSKKIEALLAFST-IP-PS-VNQVEMNPAWQQRQLREFCKSKS 63 (175)
Q Consensus 2 ~~~~l~~l~~~GkIr~iGv-----S~~-----~~~~i~~~~~~~~-~~-~~-~~q~~~~~~~~~~~~~~~~~~~g 63 (175)
+++.++.++++| ++.|-+ +.| +...+..+++... ++ .. +-....++..-..++++..++.|
T Consensus 191 Vv~Ei~~l~~~g-~~ei~l~d~n~~~yG~d~~~~~~l~~Ll~~l~~i~~l~~ir~~~~~p~~~~~ell~~m~~~g 264 (502)
T PRK14326 191 ILAEVQALVDEG-VLEVTLLGQNVNAYGVSFGDRGAFSKLLRACGEIDGLERVRFTSPHPAEFTDDVIEAMAETP 264 (502)
T ss_pred HHHHHHHHHHCC-CceEEEEeecccccccCCCCHHHHHHHHHHHHhcCCccEEEEeccChhhCCHHHHHHHHhcC
Confidence 567788888887 666633 111 2333433433221 11 11 11111233333578999998876
No 196
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=23.86 E-value=3.9e+02 Score=21.57 Aligned_cols=11 Identities=36% Similarity=1.023 Sum_probs=5.2
Q ss_pred HHHHHHHhCCC
Q 037019 54 QLREFCKSKSI 64 (175)
Q Consensus 54 ~~~~~~~~~gi 64 (175)
++++++++.|+
T Consensus 174 ~~~~~~~~~gi 184 (329)
T PRK13361 174 DLVEFCRERGL 184 (329)
T ss_pred HHHHHHHhcCC
Confidence 34445544443
No 197
>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate. There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....
Probab=23.86 E-value=1.5e+02 Score=23.90 Aligned_cols=42 Identities=10% Similarity=0.101 Sum_probs=30.6
Q ss_pred CHHHHHHHHHhCCCCceEeccccCccccc------HHHHHHHHhCCCeEEE
Q 037019 24 SSKKIEALLAFSTIPPSVNQVEMNPAWQQ------RQLREFCKSKSIIVNV 68 (175)
Q Consensus 24 ~~~~i~~~~~~~~~~~~~~q~~~~~~~~~------~~~~~~~~~~gi~vi~ 68 (175)
+.+.+.++++. .|..+++.-|.+..+ .++.++|+..||.|=+
T Consensus 85 ~~e~i~~ai~~---GftSVM~DgS~l~~eeNi~~T~~vv~~ah~~gv~VEa 132 (287)
T PF01116_consen 85 DFEDIKRAIDA---GFTSVMIDGSALPFEENIAITREVVEYAHAYGVSVEA 132 (287)
T ss_dssp SHHHHHHHHHH---TSSEEEEE-TTS-HHHHHHHHHHHHHHHHHTT-EEEE
T ss_pred CHHHHHHHHHh---CcccccccCCcCCHHHHHHHHHHHHHhhhhhCCEEEE
Confidence 57777777776 578888888876654 6799999999988755
No 198
>PRK05414 urocanate hydratase; Provisional
Probab=23.66 E-value=1.2e+02 Score=26.60 Aligned_cols=46 Identities=13% Similarity=0.052 Sum_probs=35.0
Q ss_pred CHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHhCC-CCceEecccc
Q 037019 1 GLWEAMEVCQRLGLTKFIGVSNFSSKKIEALLAFST-IPPSVNQVEM 46 (175)
Q Consensus 1 e~~~~l~~l~~~GkIr~iGvS~~~~~~i~~~~~~~~-~~~~~~q~~~ 46 (175)
|+++..++.+++|+...||+-+--.+.+.++++..- +++..-|...
T Consensus 221 eal~~~~~a~~~~~~~SIg~~GNaadv~~~l~~~~i~pDlvtDQTSa 267 (556)
T PRK05414 221 EALALAEEAKAAGEPLSIGLLGNAADVLPELVRRGIRPDLVTDQTSA 267 (556)
T ss_pred HHHHHHHHHHHcCCceEEEEeccHHHHHHHHHHcCCCCCccCcCccc
Confidence 467788899999999999999999999999987632 2333445443
No 199
>PRK14469 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=23.63 E-value=4.1e+02 Score=21.74 Aligned_cols=73 Identities=16% Similarity=0.255 Sum_probs=43.3
Q ss_pred HHHHHHHHHHc-CC---ccEEEecC--CCHHHHHHHHHhCC-CCceEeccccCccccc---------HHHHHHHHhCCCe
Q 037019 2 LWEAMEVCQRL-GL---TKFIGVSN--FSSKKIEALLAFST-IPPSVNQVEMNPAWQQ---------RQLREFCKSKSII 65 (175)
Q Consensus 2 ~~~~l~~l~~~-Gk---Ir~iGvS~--~~~~~i~~~~~~~~-~~~~~~q~~~~~~~~~---------~~~~~~~~~~gi~ 65 (175)
+++.++++.++ |. |+++=+.+ -+.+.+.++.+... .+..++-++||+.... ....+..+++|+.
T Consensus 237 Il~~l~~~~~~~~~~v~i~yvlI~g~NDs~ed~~~La~llk~~~~~VnLIpynp~~~~~~~ps~e~l~~f~~~l~~~gi~ 316 (343)
T PRK14469 237 IINAVKIYQKKTGNRVTIEYILIKGFNDEIEDAKKLAELLKGLKVFVNLIPVNPTVPGLEKPSRERIERFKEILLKNGIE 316 (343)
T ss_pred HHHHHHHHHHHhCCeEEEEEEEECCCCCCHHHHHHHHHHHhccCcEEEEEecCCCCccCCCCCHHHHHHHHHHHHHCCCe
Confidence 44555655544 32 44555554 45566766665433 3345666788875421 3466667778888
Q ss_pred EEEecCCCC
Q 037019 66 VNVFSPLGA 74 (175)
Q Consensus 66 vi~~~~l~~ 74 (175)
+..+...+.
T Consensus 317 vtvr~~~g~ 325 (343)
T PRK14469 317 AEIRREKGS 325 (343)
T ss_pred EEEeCCCCc
Confidence 888776655
No 200
>TIGR03677 rpl7ae 50S ribosomal protein L7Ae. Multifunctional RNA-binding protein that recognizes the K-turn motif in ribosomal RNA, box H/ACA, box C/D and box C'/D' sRNAs. Interacts with protein L15e.
Probab=23.59 E-value=2.5e+02 Score=19.18 Aligned_cols=60 Identities=18% Similarity=0.201 Sum_probs=39.5
Q ss_pred HHHHHHHHHcCCccEEEecCCCHHHHHHHHHhCCCCceEeccccCcccccHHHHHHHHhCCCeEEE
Q 037019 3 WEAMEVCQRLGLTKFIGVSNFSSKKIEALLAFSTIPPSVNQVEMNPAWQQRQLREFCKSKSIIVNV 68 (175)
Q Consensus 3 ~~~l~~l~~~GkIr~iGvS~~~~~~i~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~gi~vi~ 68 (175)
+..|..+++.|++. ....++.+.++....++.++--..++.+....+..+|+..+|+++.
T Consensus 15 ~~lL~la~ragkl~------~G~~~v~kaikkgka~LVilA~D~s~~~~~~~i~~lc~~~~Ip~~~ 74 (117)
T TIGR03677 15 LEAVEKARETGKIK------KGTNEVTKAVERGIAKLVVIAEDVEPPEIVAHLPALCEEKGIPYVY 74 (117)
T ss_pred HHHHHHHHHcCCEe------EcHHHHHHHHHcCCccEEEEeCCCCcHHHHHHHHHHHHHcCCCEEE
Confidence 44556666677632 2355666666666666777777766655557788888888888655
No 201
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=23.58 E-value=1.3e+02 Score=15.95 Aligned_cols=17 Identities=18% Similarity=0.311 Sum_probs=11.1
Q ss_pred cCCCHHHHHHHHHhCCC
Q 037019 21 SNFSSKKIEALLAFSTI 37 (175)
Q Consensus 21 S~~~~~~i~~~~~~~~~ 37 (175)
++|+.+++...++..++
T Consensus 2 dtWs~~~L~~wL~~~gi 18 (38)
T PF10281_consen 2 DTWSDSDLKSWLKSHGI 18 (38)
T ss_pred CCCCHHHHHHHHHHcCC
Confidence 45667777777766654
No 202
>PRK13958 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=23.41 E-value=2.2e+02 Score=21.56 Aligned_cols=32 Identities=19% Similarity=0.081 Sum_probs=25.7
Q ss_pred CCccEEEec-CCCHHHHHHHHHhCCCCceEecccc
Q 037019 13 GLTKFIGVS-NFSSKKIEALLAFSTIPPSVNQVEM 46 (175)
Q Consensus 13 GkIr~iGvS-~~~~~~i~~~~~~~~~~~~~~q~~~ 46 (175)
+.++.+||. |-+++.+.++++.. .++++|++-
T Consensus 51 ~~~~~VgVf~~~~~~~i~~~~~~~--~~d~vQLHG 83 (207)
T PRK13958 51 NHIDKVCVVVNPDLTTIEHILSNT--SINTIQLHG 83 (207)
T ss_pred CCCCEEEEEeCCCHHHHHHHHHhC--CCCEEEECC
Confidence 568889975 78899999988766 568888875
No 203
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed
Probab=23.41 E-value=2.9e+02 Score=22.17 Aligned_cols=22 Identities=27% Similarity=0.415 Sum_probs=10.7
Q ss_pred HHHHHHHHhCCCe--EEEecCCCC
Q 037019 53 RQLREFCKSKSII--VNVFSPLGA 74 (175)
Q Consensus 53 ~~~~~~~~~~gi~--vi~~~~l~~ 74 (175)
.++++++++.|+. ++.+.|++.
T Consensus 177 ~~l~~~~~~~gv~v~~ie~~p~~~ 200 (331)
T PRK00164 177 PDLLEWAKDRGIQLRFIELMPTGE 200 (331)
T ss_pred HHHHHHHHhCCCeEEEEEeeECCC
Confidence 3455555555533 344445543
No 204
>PLN02714 thiamin pyrophosphokinase
Probab=23.20 E-value=3.5e+02 Score=20.79 Aligned_cols=57 Identities=12% Similarity=0.192 Sum_probs=41.1
Q ss_pred HHHHHHHHhCCCeEEEecCCCCCCCCCCCccccChHHHHHHHHHhCCCHHHHHHHHHHhC--------CcEEEecCC--C
Q 037019 53 RQLREFCKSKSIIVNVFSPLGAVGSCWGTNQVMNNEALKQIADAHGETVAQVCLRWIIEQ--------GAIVIAKSF--N 122 (175)
Q Consensus 53 ~~~~~~~~~~gi~vi~~~~l~~~G~l~~~~~~~~~~~l~~~a~~~g~~~~q~al~~~l~~--------~~~~i~G~~--~ 122 (175)
++.+++.+++|+.++.+-|-- ..|-.++|++|++.+ ..+.|.|+. .
T Consensus 67 ~e~~~~~~~~~~~i~~~~~eK------------------------D~TD~e~Al~~~~~~~~~~~~~~~~I~v~Ga~GGR 122 (229)
T PLN02714 67 PEVLDFYSNLGTKIVDESHDQ------------------------DTTDLHKCIAYIRDSTPDLDKSNLCILVLGALGGR 122 (229)
T ss_pred HHHHHHHHHCCCEEEECCCCc------------------------ccCHHHHHHHHHHHhccccccCCceEEEEcccCCc
Confidence 678888888888776654432 357789999999854 246677755 6
Q ss_pred HHHHHHhhccc
Q 037019 123 KERLKENLDIF 133 (175)
Q Consensus 123 ~~~l~enl~a~ 133 (175)
.+|.-.|+..+
T Consensus 123 lDH~laNi~~L 133 (229)
T PLN02714 123 FDHEAGNINVL 133 (229)
T ss_pred hHHHHHHHHHH
Confidence 78888888764
No 205
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=23.03 E-value=3.6e+02 Score=20.87 Aligned_cols=15 Identities=13% Similarity=0.135 Sum_probs=9.8
Q ss_pred ChHHHHHHHHHhCCC
Q 037019 86 NNEALKQIADAHGET 100 (175)
Q Consensus 86 ~~~~l~~~a~~~g~~ 100 (175)
....+.+++++.|.+
T Consensus 238 ~~~~~~~~~~~~gi~ 252 (254)
T TIGR00735 238 TIGEVKEYLAERGIP 252 (254)
T ss_pred CHHHHHHHHHHCCCc
Confidence 456667777777654
No 206
>PRK14456 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=23.02 E-value=4.5e+02 Score=21.95 Aligned_cols=21 Identities=19% Similarity=0.276 Sum_probs=11.7
Q ss_pred HHHHHHHhCCCeEEEecCCCC
Q 037019 54 QLREFCKSKSIIVNVFSPLGA 74 (175)
Q Consensus 54 ~~~~~~~~~gi~vi~~~~l~~ 74 (175)
...+.++++|+.+..+.+.|.
T Consensus 333 ~F~~~L~~~Gi~vtvR~~~G~ 353 (368)
T PRK14456 333 RFRDRLLDAGLQVTVRKSYGT 353 (368)
T ss_pred HHHHHHHHCCCcEEeeCCCCc
Confidence 344555556666666655544
No 207
>PRK14463 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=22.95 E-value=4.4e+02 Score=21.79 Aligned_cols=59 Identities=19% Similarity=0.321 Sum_probs=34.6
Q ss_pred cEEEecCC--CHHHHHHHHHhCC-CCceEeccccCcccc------c----HHHHHHHHhCCCeEEEecCCCC
Q 037019 16 KFIGVSNF--SSKKIEALLAFST-IPPSVNQVEMNPAWQ------Q----RQLREFCKSKSIIVNVFSPLGA 74 (175)
Q Consensus 16 r~iGvS~~--~~~~i~~~~~~~~-~~~~~~q~~~~~~~~------~----~~~~~~~~~~gi~vi~~~~l~~ 74 (175)
+|+=+.+. +.+.+.++.+... .+..++-++||+... . ......++++||.+..+.+.+.
T Consensus 254 eyvLI~GvNDs~e~~~~L~~ll~~l~~~vnlIPyn~~~~~~~~~ps~e~i~~f~~~L~~~gi~v~vR~~~G~ 325 (349)
T PRK14463 254 EYVMIRGLNDSLEDAKRLVRLLSDIPSKVNLIPFNEHEGCDFRSPTQEAIDRFHKYLLDKHVTVITRSSRGS 325 (349)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHhccCceEEEEecCCCCCCCCCCCCHHHHHHHHHHHHHCCceEEEeCCCCc
Confidence 34444443 4466666554443 344666677777542 1 2456667778888888777765
No 208
>TIGR00381 cdhD CO dehydrogenase/acetyl-CoA synthase, delta subunit. This is the small subunit of a heterodimer which catalyzes the reaction CO + H2O + Acceptor = CO2 + Reduced acceptor and is involved in the synthesis of acetyl-CoA from CO2 and H2.
Probab=22.95 E-value=2.6e+02 Score=23.63 Aligned_cols=51 Identities=6% Similarity=0.023 Sum_probs=33.8
Q ss_pred CCCHHHHHHHHHhCCC-CceEeccccCcccccHHHHHHHHhCCCeEEEecCCCC
Q 037019 22 NFSSKKIEALLAFSTI-PPSVNQVEMNPAWQQRQLREFCKSKSIIVNVFSPLGA 74 (175)
Q Consensus 22 ~~~~~~i~~~~~~~~~-~~~~~q~~~~~~~~~~~~~~~~~~~gi~vi~~~~l~~ 74 (175)
..+++.++++++.+.. ++.++...... .-..+.+.|+++|..++++++..-
T Consensus 200 ~kD~eVLeaaLe~~~G~kpLL~SAt~e~--Ny~~ia~lAk~yg~~Vvv~s~~Di 251 (389)
T TIGR00381 200 EKDPLVLEKAAEVAEGERCLLASANLDL--DYEKIANAAKKYGHVVLSWTIMDI 251 (389)
T ss_pred cCCHHHHHHHHHHhCCCCcEEEecCchh--hHHHHHHHHHHhCCeEEEEcCCcH
Confidence 3577777777776653 44444333321 125788999999999999887754
No 209
>cd01821 Rhamnogalacturan_acetylesterase_like Rhamnogalacturan_acetylesterase_like subgroup of SGNH-hydrolases. Rhamnogalacturan acetylesterase removes acetyl esters from rhamnogalacturonan substrates, and renders them susceptible to degradation by rhamnogalacturonases. Rhamnogalacturonans are highly branched regions in pectic polysaccharides, consisting of repeating -(1,2)-L-Rha-(1,4)-D-GalUA disaccharide units, with many rhamnose residues substituted by neutral oligosaccharides such as arabinans, galactans and arabinogalactans. Extracellular enzymes participating in the degradation of plant cell wall polymers, such as Rhamnogalacturonan acetylesterase, would typically be found in saprophytic and plant pathogenic fungi and bacteria.
Probab=22.91 E-value=3e+02 Score=19.91 Aligned_cols=86 Identities=14% Similarity=0.069 Sum_probs=51.9
Q ss_pred CccEEEecCCCHHHHH------HHHHhC-CCCceEeccccCcccc-------c--------HHHHHHHHhCCCeEEEecC
Q 037019 14 LTKFIGVSNFSSKKIE------ALLAFS-TIPPSVNQVEMNPAWQ-------Q--------RQLREFCKSKSIIVNVFSP 71 (175)
Q Consensus 14 kIr~iGvS~~~~~~i~------~~~~~~-~~~~~~~q~~~~~~~~-------~--------~~~~~~~~~~gi~vi~~~~ 71 (175)
.|...|+++.+...+. .++... +.+..++++-.|-... . ..+++.++++|..++..+|
T Consensus 36 ~v~N~gi~G~ts~~~~~~~~~~~~l~~~~~pdlVii~~G~ND~~~~~~~~~~~~~~~~~nl~~ii~~~~~~~~~~il~tp 115 (198)
T cd01821 36 TVVNHAKGGRSSRSFRDEGRWDAILKLIKPGDYVLIQFGHNDQKPKDPEYTEPYTTYKEYLRRYIAEARAKGATPILVTP 115 (198)
T ss_pred EEEeCCCCCccHHHHHhCCcHHHHHhhCCCCCEEEEECCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHCCCeEEEECC
Confidence 6778899998876543 344332 2355666665553222 1 4688999999999998887
Q ss_pred CCCCCCCCCCc----cc-cChHHHHHHHHHhCCC
Q 037019 72 LGAVGSCWGTN----QV-MNNEALKQIADAHGET 100 (175)
Q Consensus 72 l~~~G~l~~~~----~~-~~~~~l~~~a~~~g~~ 100 (175)
... .-+.... .. .-.+.++++|+++|+.
T Consensus 116 ~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 148 (198)
T cd01821 116 VTR-RTFDEGGKVEDTLGDYPAAMRELAAEEGVP 148 (198)
T ss_pred ccc-cccCCCCcccccchhHHHHHHHHHHHhCCC
Confidence 643 1111111 01 1136778888888764
No 210
>PF14177 YkyB: YkyB-like protein
Probab=22.82 E-value=81 Score=22.43 Aligned_cols=18 Identities=28% Similarity=0.337 Sum_probs=16.0
Q ss_pred HHHHHHHHcCCccEEEec
Q 037019 4 EAMEVCQRLGLTKFIGVS 21 (175)
Q Consensus 4 ~~l~~l~~~GkIr~iGvS 21 (175)
++|.+|.++|+.+-||+-
T Consensus 31 ~aL~Kll~E~kA~kiGlH 48 (140)
T PF14177_consen 31 KALQKLLEEGKAKKIGLH 48 (140)
T ss_pred HHHHHHHHcCcceEEEEe
Confidence 579999999999999954
No 211
>PRK00979 tetrahydromethanopterin S-methyltransferase subunit H; Provisional
Probab=22.62 E-value=4.3e+02 Score=21.60 Aligned_cols=45 Identities=16% Similarity=0.050 Sum_probs=29.0
Q ss_pred EEecCCCHHHHHHHHHhCC-----CCceEeccccCcccccHHHHHHHHhCCCe
Q 037019 18 IGVSNFSSKKIEALLAFST-----IPPSVNQVEMNPAWQQRQLREFCKSKSII 65 (175)
Q Consensus 18 iGvS~~~~~~i~~~~~~~~-----~~~~~~q~~~~~~~~~~~~~~~~~~~gi~ 65 (175)
+-+-+.+++.+++.++.+. .++..|.+.... +++.++.++++|+.
T Consensus 99 l~IDSt~p~a~eaaLk~~~e~G~~gR~IiNSIn~e~---~~eel~llk~yg~a 148 (308)
T PRK00979 99 FLIDSTSPEARIAAAKYATELGLADRAIYNSINPSI---EEEEIEALKESDIK 148 (308)
T ss_pred EEEeCCCHHHHHHHHHHhhhcCCCCceEEEeccCCC---CHHHHHHHHHhCCc
Confidence 3455567777777777642 355666655542 23668999999966
No 212
>cd08562 GDPD_EcUgpQ_like Glycerophosphodiester phosphodiesterase domain in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase UgpQ and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46), UgpQ, and similar proteins. GP-GDE plays an essential role in the metabolic pathway of E. coli. It catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols, which are major sources of carbon and phosphate. E. coli possesses two major G3P uptake systems: Glp and Ugp, which contain genes coding for two distinct GP-GDEs. UgpQ gene from the E. coli ugp operon codes for a cytosolic phosphodiesterase GlpQ, which is the prototype of this family. Various glycerophosphodiesters, such as glycerophosphocholine (GPC), glycerophosphoethanolanmine (GPE), glycerophosphoglycerol (GPG)
Probab=22.55 E-value=3.3e+02 Score=20.29 Aligned_cols=64 Identities=13% Similarity=0.070 Sum_probs=36.6
Q ss_pred HHHHHcCCc-cEEEecCCCHHHHHHHHHhCC-CCceE--------------------eccccCcccccHHHHHHHHhCCC
Q 037019 7 EVCQRLGLT-KFIGVSNFSSKKIEALLAFST-IPPSV--------------------NQVEMNPAWQQRQLREFCKSKSI 64 (175)
Q Consensus 7 ~~l~~~GkI-r~iGvS~~~~~~i~~~~~~~~-~~~~~--------------------~q~~~~~~~~~~~~~~~~~~~gi 64 (175)
..+++.|.. ..+=+++|+.+.+..+.+..+ .+... +.+.++ ....++++.++++|+
T Consensus 123 ~~l~~~~~~~~~v~~~Sf~~~~l~~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~g~ 200 (229)
T cd08562 123 AALRELWPHASKLLLSSFSLEALRAARRAAPELPLGLLFDTLPADWLELLAALGAVSIHLNYR--GLTEEQVKALKDAGY 200 (229)
T ss_pred HHHHHhcCCcCCEEEECCCHHHHHHHHHhCCCCcEEEEecCCCcCHHHHHHHcCCeEEecChh--hCCHHHHHHHHHCCC
Confidence 334455553 666678888887777766443 11111 111111 113578888888888
Q ss_pred eEEEecCC
Q 037019 65 IVNVFSPL 72 (175)
Q Consensus 65 ~vi~~~~l 72 (175)
.+.+|..-
T Consensus 201 ~v~~wTvn 208 (229)
T cd08562 201 KLLVYTVN 208 (229)
T ss_pred EEEEEeCC
Confidence 88888554
No 213
>COG2949 SanA Uncharacterized membrane protein [Function unknown]
Probab=22.51 E-value=2.9e+02 Score=21.45 Aligned_cols=56 Identities=9% Similarity=0.050 Sum_probs=38.1
Q ss_pred HHHHHHHHHcCCccEEEecCC-------CHHHHHHHHHhCCCCceEeccccCcccccHHHHHH
Q 037019 3 WEAMEVCQRLGLTKFIGVSNF-------SSKKIEALLAFSTIPPSVNQVEMNPAWQQRQLREF 58 (175)
Q Consensus 3 ~~~l~~l~~~GkIr~iGvS~~-------~~~~i~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~ 58 (175)
+++-.++.++|||+++=+|+- .+..+.+-+-..+++...+-+.|--|..-..++..
T Consensus 82 i~aA~~ly~~gKV~~LLlSGDN~~~sYnEp~tM~kdL~~~GVp~~~i~lDyAGFrTLDSvvRA 144 (235)
T COG2949 82 IDAAIALYKAGKVNYLLLSGDNATVSYNEPRTMRKDLIAAGVPAKNIFLDYAGFRTLDSVVRA 144 (235)
T ss_pred HHHHHHHHhcCCeeEEEEecCCCcccccchHHHHHHHHHcCCCHHHeeecccCccHHHHHHHH
Confidence 356678899999999999873 35556666666777777777777655543444333
No 214
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=22.49 E-value=4.1e+02 Score=21.31 Aligned_cols=63 Identities=11% Similarity=0.045 Sum_probs=43.3
Q ss_pred HHHHHHHHHcCCccEEEecCCCHHHHHHHHHhCCCCceEeccccCcccccHHHHHHHHhCCCeEEEecC
Q 037019 3 WEAMEVCQRLGLTKFIGVSNFSSKKIEALLAFSTIPPSVNQVEMNPAWQQRQLREFCKSKSIIVNVFSP 71 (175)
Q Consensus 3 ~~~l~~l~~~GkIr~iGvS~~~~~~i~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~gi~vi~~~~ 71 (175)
..+++.++++-.+ -|.|-++.++.++++++. +. ..+|-+ +-+ .++++++.+.++|++++.+-.
T Consensus 79 ~pvI~~l~~~~~~-~ISIDT~~~~va~~AL~~-Ga-diINDI--~g~-~d~~~~~~~a~~~~~vVlmh~ 141 (282)
T PRK11613 79 IPVVEAIAQRFEV-WISVDTSKPEVIRESAKA-GA-HIINDI--RSL-SEPGALEAAAETGLPVCLMHM 141 (282)
T ss_pred HHHHHHHHhcCCC-eEEEECCCHHHHHHHHHc-CC-CEEEEC--CCC-CCHHHHHHHHHcCCCEEEEcC
Confidence 3456666654233 489999999999999976 32 233333 223 256888999999999998854
No 215
>cd08607 GDPD_GDE5 Glycerophosphodiester phosphodiesterase domain of putative mammalian glycerophosphodiester phosphodiesterase GDE5 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in putative mammalian GDE5 and similar proteins. Mammalian GDE5 is widely expressed in mammalian tissues, with highest expression in the spinal chord. Although its biological function remains unclear, mammalian GDE5 shows higher sequence homology to fungal and plant glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46) than to other bacterial and mammalian GP-GDEs. It may also hydrolyze glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. In addition to C-terminal GDPD domain, all members in this subfamily have a starch binding domain (CBM20) in the N-terminus, which suggests these proteins may play a distinct role in glycerol metabolism.
Probab=22.37 E-value=3.9e+02 Score=20.98 Aligned_cols=30 Identities=13% Similarity=0.046 Sum_probs=20.5
Q ss_pred HHHHHHcCCccEEEecCCCHHHHHHHHHhC
Q 037019 6 MEVCQRLGLTKFIGVSNFSSKKIEALLAFS 35 (175)
Q Consensus 6 l~~l~~~GkIr~iGvS~~~~~~i~~~~~~~ 35 (175)
++.+++.+..+.+=+|+|+++.+..+....
T Consensus 166 ~~~i~~~~~~~~v~isSF~~~~l~~~~~~~ 195 (290)
T cd08607 166 LKIVLEHAGKRRIIFSSFDADICTMLRFKQ 195 (290)
T ss_pred HHHHHHhCCCCCEEEEcCCHHHHHHHHHhC
Confidence 344455566677779999998777665543
No 216
>PF01171 ATP_bind_3: PP-loop family; InterPro: IPR011063 This entry represents the PP-loop motif superfamily [,]. The PP-loop motif appears to be a modified version of the P-loop of nucleotide binding domain that is involved in phosphate binding []. Named PP-motif, since it appears to be a part of a previously uncharacterised ATP pyrophophatase domain. ATP sulfurylases, Escherichia coli NtrL, and Bacillus subtilis OutB consist of this domain alone. In other proteins, the pyrophosphatase domain is associated with amidotransferase domains (type I or type II), a putative citrulline-aspartate ligase domain or a nitrilase/amidase domain.; PDB: 3A2K_A 2E89_B 2E21_D 1WY5_B 1NI5_A.
Probab=22.32 E-value=1.5e+02 Score=21.58 Aligned_cols=38 Identities=13% Similarity=0.108 Sum_probs=23.5
Q ss_pred CCCCceEeccccCccccc----HHHHHHHHhCCCeEEEecCC
Q 037019 35 STIPPSVNQVEMNPAWQQ----RQLREFCKSKSIIVNVFSPL 72 (175)
Q Consensus 35 ~~~~~~~~q~~~~~~~~~----~~~~~~~~~~gi~vi~~~~l 72 (175)
.+..+.++-+.+..-... ..+-++|++.||.+.....-
T Consensus 26 ~~~~~~~~~vdh~~~~~s~~~~~~v~~~~~~~~i~~~~~~~~ 67 (182)
T PF01171_consen 26 NGIKLIAVHVDHGLREESDEEAEFVEEICEQLGIPLYIVRID 67 (182)
T ss_dssp TTTEEEEEEEE-STSCCHHHHHHHHHHHHHHTT-EEEEEE--
T ss_pred cCCCeEEEEEecCCCcccchhHHHHHHHHHhcCCceEEEEee
Confidence 344566777766654322 45999999999998876655
No 217
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=22.30 E-value=2.5e+02 Score=22.63 Aligned_cols=60 Identities=12% Similarity=0.149 Sum_probs=36.1
Q ss_pred HHHHHHHHHHcCCccEEEecCCCHHHHHHHHHh----CCC--CceEeccccCccccc-HHHHHHHHhCCCe
Q 037019 2 LWEAMEVCQRLGLTKFIGVSNFSSKKIEALLAF----STI--PPSVNQVEMNPAWQQ-RQLREFCKSKSII 65 (175)
Q Consensus 2 ~~~~l~~l~~~GkIr~iGvS~~~~~~i~~~~~~----~~~--~~~~~q~~~~~~~~~-~~~~~~~~~~gi~ 65 (175)
+-+.|.+|+++|....|- |+-+.+.+.++++. ... .|+++...+. +. ..+...+++.|++
T Consensus 36 ~~e~L~~L~~~Gi~lai~-S~n~~~~a~~~l~~~~~~~~~~~~f~~~~~~~~---pk~~~i~~~~~~l~i~ 102 (320)
T TIGR01686 36 LQEKIKTLKKQGFLLALA-SKNDEDDAKKVFERRKDFILQAEDFDARSINWG---PKSESLRKIAKKLNLG 102 (320)
T ss_pred HHHHHHHHHhCCCEEEEE-cCCCHHHHHHHHHhCccccCcHHHeeEEEEecC---chHHHHHHHHHHhCCC
Confidence 457899999999766664 44456777777765 322 2555544432 22 3466666666543
No 218
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=22.29 E-value=3.6e+02 Score=20.60 Aligned_cols=65 Identities=14% Similarity=0.006 Sum_probs=44.2
Q ss_pred HHHHHHHHcCC-ccEEEecC-CCHHHHHHHHHhCCCCceEeccccCcccccHHHHHHHHhC-CCeEEEecCCC
Q 037019 4 EAMEVCQRLGL-TKFIGVSN-FSSKKIEALLAFSTIPPSVNQVEMNPAWQQRQLREFCKSK-SIIVNVFSPLG 73 (175)
Q Consensus 4 ~~l~~l~~~Gk-Ir~iGvS~-~~~~~i~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~-gi~vi~~~~l~ 73 (175)
+...++.+... ++.+||.. .+.+.+.++++.. .++.+|++-. -+.+.++..++. ++.++-.-+..
T Consensus 41 ~~a~~i~~~v~~~~~VgVf~n~~~~~i~~i~~~~--~ld~VQlHG~---e~~~~~~~l~~~~~~~v~kai~v~ 108 (208)
T COG0135 41 EQAREIASAVPKVKVVGVFVNESIEEILEIAEEL--GLDAVQLHGD---EDPEYIDQLKEELGVPVIKAISVS 108 (208)
T ss_pred HHHHHHHHhCCCCCEEEEECCCCHHHHHHHHHhc--CCCEEEECCC---CCHHHHHHHHhhcCCceEEEEEeC
Confidence 45666776655 89999664 7888899998775 5789998764 345666666655 35555544443
No 219
>PF01476 LysM: LysM domain; InterPro: IPR018392 This domain is about 40 residues long and is found in a variety of enzymes involved in bacterial cell wall degradation []. This domain may have a general peptidoglycan binding function.; GO: 0016998 cell wall macromolecule catabolic process; PDB: 2DJP_A 3ZQD_A 1Y7M_B 4A52_A 2L9Y_A 1E0G_A.
Probab=22.29 E-value=1e+02 Score=16.33 Aligned_cols=19 Identities=26% Similarity=0.345 Sum_probs=12.0
Q ss_pred hHHHHHHHHHhCCCHHHHH
Q 037019 87 NEALKQIADAHGETVAQVC 105 (175)
Q Consensus 87 ~~~l~~~a~~~g~~~~q~a 105 (175)
.+.+..+|++++++..++.
T Consensus 6 gDtl~~IA~~~~~~~~~l~ 24 (44)
T PF01476_consen 6 GDTLWSIAKRYGISVDELM 24 (44)
T ss_dssp T--HHHHHHHTTS-HHHHH
T ss_pred CCcHHHHHhhhhhhHhHHH
Confidence 3567888888888777653
No 220
>cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites.
Probab=22.19 E-value=2.9e+02 Score=22.64 Aligned_cols=50 Identities=12% Similarity=0.016 Sum_probs=31.4
Q ss_pred CCHHHHHHHHHhCCCCceEeccccCccccc-HHHHHHHHhCCCeEEEecCC
Q 037019 23 FSSKKIEALLAFSTIPPSVNQVEMNPAWQQ-RQLREFCKSKSIIVNVFSPL 72 (175)
Q Consensus 23 ~~~~~i~~~~~~~~~~~~~~q~~~~~~~~~-~~~~~~~~~~gi~vi~~~~l 72 (175)
.+++.+++.+...+.+..++....+....+ .++.+.|+++|+.++.=...
T Consensus 148 id~~~l~~~i~~~~~~~v~~~~~~~~~~~~~~~I~~l~~~~~~~li~D~a~ 198 (402)
T cd00378 148 IDYDALEKMALEFKPKLIVAGASAYPRPIDFKRFREIADEVGAYLLVDMAH 198 (402)
T ss_pred cCHHHHHHHHHhCCCCEEEecCcccCCCcCHHHHHHHHHhcCCEEEEEccc
Confidence 477888877754444444433333333323 67999999999888876653
No 221
>PF01978 TrmB: Sugar-specific transcriptional regulator TrmB; InterPro: IPR002831 TrmB, is a protein of 38,800 apparent molecular weight, that is involved in the maltose-specific regulation of the trehalose/maltose ABC transport operon in Thermococcus litoralis. TrmB has been shown to be a maltose-specific repressor, and this inhibition is counteracted by maltose and trehalose. TrmB binds maltose and trehalose half-maximally at 20 uM and 0.5 mM sugar concentration, respectively []. Other members of this family are annotated as either transcriptional regulators or hypothetical proteins. ; PDB: 2D1H_A 3QPH_A 1SFX_A.
Probab=22.07 E-value=1.1e+02 Score=18.30 Aligned_cols=19 Identities=16% Similarity=0.212 Sum_probs=16.1
Q ss_pred HHHHHHHHHHcCCccEEEe
Q 037019 2 LWEAMEVCQRLGLTKFIGV 20 (175)
Q Consensus 2 ~~~~l~~l~~~GkIr~iGv 20 (175)
+.++|..|.++|.|...+-
T Consensus 39 v~~~L~~L~~~GlV~~~~~ 57 (68)
T PF01978_consen 39 VYRALKSLEEKGLVEREEG 57 (68)
T ss_dssp HHHHHHHHHHTTSEEEEEE
T ss_pred HHHHHHHHHHCCCEEEEcC
Confidence 4678999999999988873
No 222
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=22.05 E-value=1.1e+02 Score=23.40 Aligned_cols=31 Identities=3% Similarity=-0.062 Sum_probs=25.6
Q ss_pred HHHHHHHHHhCCcEEEecCCCHHHHHHhhcc
Q 037019 102 AQVCLRWIIEQGAIVIAKSFNKERLKENLDI 132 (175)
Q Consensus 102 ~q~al~~~l~~~~~~i~G~~~~~~l~enl~a 132 (175)
..-.++++...+...+||+.++.++.+..++
T Consensus 98 ~~~v~~~~~~~~i~~iPG~~T~~E~~~A~~~ 128 (213)
T PRK06552 98 NRETAKICNLYQIPYLPGCMTVTEIVTALEA 128 (213)
T ss_pred CHHHHHHHHHcCCCEECCcCCHHHHHHHHHc
Confidence 3557778888888899999999999988865
No 223
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=21.79 E-value=1.8e+02 Score=23.39 Aligned_cols=42 Identities=14% Similarity=0.143 Sum_probs=29.1
Q ss_pred CHHHHHHHHHhCCCCceEeccccCccccc------HHHHHHHHhCCCeEEE
Q 037019 24 SSKKIEALLAFSTIPPSVNQVEMNPAWQQ------RQLREFCKSKSIIVNV 68 (175)
Q Consensus 24 ~~~~i~~~~~~~~~~~~~~q~~~~~~~~~------~~~~~~~~~~gi~vi~ 68 (175)
+.+.+.++++. .|..+++.-|-+..+ +++.++|+..|+.|=+
T Consensus 86 ~~e~i~~ai~~---GFtSVM~DgS~lp~eeNi~~T~evv~~Ah~~gv~VEa 133 (286)
T PRK12738 86 SLDDIRRKVHA---GVRSAMIDGSHFPFAENVKLVKSVVDFCHSQDCSVEA 133 (286)
T ss_pred CHHHHHHHHHc---CCCeEeecCCCCCHHHHHHHHHHHHHHHHHcCCeEEE
Confidence 45556666544 467777777755543 6899999999987744
No 224
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=21.75 E-value=2.4e+02 Score=18.38 Aligned_cols=29 Identities=21% Similarity=0.213 Sum_probs=22.1
Q ss_pred cCCccEEEecCCCHHHHHHHHHhCCCCce
Q 037019 12 LGLTKFIGVSNFSSKKIEALLAFSTIPPS 40 (175)
Q Consensus 12 ~GkIr~iGvS~~~~~~i~~~~~~~~~~~~ 40 (175)
+-.++.+|||.-+.+.+.++.+..+.++.
T Consensus 57 ~~~~~vi~is~d~~~~~~~~~~~~~~~~~ 85 (124)
T PF00578_consen 57 DKGVQVIGISTDDPEEIKQFLEEYGLPFP 85 (124)
T ss_dssp TTTEEEEEEESSSHHHHHHHHHHHTCSSE
T ss_pred cceEEeeecccccccchhhhhhhhccccc
Confidence 44689999999999988888876654433
No 225
>PF07725 LRR_3: Leucine Rich Repeat; InterPro: IPR011713 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by the IPR001611 from INTERPRO model.
Probab=21.74 E-value=43 Score=15.56 Aligned_cols=10 Identities=50% Similarity=1.418 Sum_probs=8.0
Q ss_pred CccchhhccC
Q 037019 165 PFKTLEELWD 174 (175)
Q Consensus 165 ~~~~~~~~~~ 174 (175)
||..++.+|+
T Consensus 8 ~~S~lekLW~ 17 (20)
T PF07725_consen 8 PYSKLEKLWE 17 (20)
T ss_pred CCCChHHhcC
Confidence 6778888886
No 226
>PF02268 TFIIA_gamma_N: Transcription initiation factor IIA, gamma subunit, helical domain; InterPro: IPR015872 Transcription factor IIA (TFIIA) is one of several factors that form part of a transcription pre-initiation complex along with RNA polymerase II, the TATA-box-binding protein (TBP) and TBP-associated factors, on the TATA-box sequence upstream of the initiation start site. After initiation, some components of the pre-initiation complex (including TFIIA) remain attached and re-initiate a subsequent round of transcription. TFIIA binds to TBP to stabilise TBP binding to the TATA element. TFIIA also inhibits the cytokine HMGB1 (high mobility group 1 protein) binding to TBP [], and can dissociate HMGB1 already bound to TBP/TATA-box. Human and Drosophila TFIIA have three subunits: two large subunits, LN/alpha and LC/beta, derived from the same gene, and a small subunit, S/gamma. Yeast TFIIA has two subunits: a large TOA1 subunit that shows sequence similarity to the N-terminal of LN/alpha and the C-terminal of LC/beta, and a small subunit, TOA2 that is highly homologous with S/gamma. The conserved regions of the large and small subunits of TFIIA combine to form two domains: a four-helix bundle (helical domain) composed of two helices from each of the N-terminal regions of TOA1 and TOA2 in yeast; and a beta-barrel (beta-barrel domain) composed of beta-sheets from the C-terminal regions of TOA1 and TOA2 []. This entry represents the alpha-helical domain found at the N-terminal of the gamma subunit of transcription factor TFIIA.; GO: 0006367 transcription initiation from RNA polymerase II promoter, 0005672 transcription factor TFIIA complex; PDB: 1NVP_D 1RM1_B 1YTF_D 1NH2_D.
Probab=21.73 E-value=77 Score=18.35 Aligned_cols=24 Identities=8% Similarity=0.057 Sum_probs=16.9
Q ss_pred HHHHHHHHHcCCccEEEecCCCHHHHHHHHHh
Q 037019 3 WEAMEVCQRLGLTKFIGVSNFSSKKIEALLAF 34 (175)
Q Consensus 3 ~~~l~~l~~~GkIr~iGvS~~~~~~i~~~~~~ 34 (175)
-++|++++++|+| +|+...+++..
T Consensus 16 ~dtLDeli~~~~I--------~p~La~kVL~~ 39 (49)
T PF02268_consen 16 TDTLDELIQEGKI--------TPQLAMKVLEQ 39 (49)
T ss_dssp HHHHHHHHHTTSS---------HHHHHHHHHH
T ss_pred HHHHHHHHHcCCC--------CHHHHHHHHHH
Confidence 4789999999996 46666666543
No 227
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=21.62 E-value=1.9e+02 Score=21.21 Aligned_cols=39 Identities=18% Similarity=0.130 Sum_probs=21.5
Q ss_pred HHHHHHHHc-CCccEEEecCCCHHHHHHHHHhCCCCceEeccc
Q 037019 4 EAMEVCQRL-GLTKFIGVSNFSSKKIEALLAFSTIPPSVNQVE 45 (175)
Q Consensus 4 ~~l~~l~~~-GkIr~iGvS~~~~~~i~~~~~~~~~~~~~~q~~ 45 (175)
++++.+++. +...-|-|-..+.+++.++++. .++.+|+.
T Consensus 68 ~av~~~~~~~~~~~~I~VEv~~~ee~~ea~~~---g~d~I~lD 107 (169)
T PF01729_consen 68 EAVKAARQAAPEKKKIEVEVENLEEAEEALEA---GADIIMLD 107 (169)
T ss_dssp HHHHHHHHHSTTTSEEEEEESSHHHHHHHHHT---T-SEEEEE
T ss_pred HHHHHHHHhCCCCceEEEEcCCHHHHHHHHHh---CCCEEEec
Confidence 344455543 2222277777777777777764 35666663
No 228
>PRK14988 GMP/IMP nucleotidase; Provisional
Probab=21.57 E-value=3.6e+02 Score=20.31 Aligned_cols=35 Identities=14% Similarity=0.092 Sum_probs=21.7
Q ss_pred CHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHhCC
Q 037019 1 GLWEAMEVCQRLGLTKFIGVSNFSSKKIEALLAFST 36 (175)
Q Consensus 1 e~~~~l~~l~~~GkIr~iGvS~~~~~~i~~~~~~~~ 36 (175)
++.+.|+.|+++|.- -.-+||-+...+...++..+
T Consensus 97 g~~e~L~~Lk~~g~~-~~i~Tn~~~~~~~~~l~~~~ 131 (224)
T PRK14988 97 DTVPFLEALKASGKR-RILLTNAHPHNLAVKLEHTG 131 (224)
T ss_pred CHHHHHHHHHhCCCe-EEEEeCcCHHHHHHHHHHCC
Confidence 456788899998754 33455555555665555443
No 229
>PRK08942 D,D-heptose 1,7-bisphosphate phosphatase; Validated
Probab=21.57 E-value=3.2e+02 Score=19.66 Aligned_cols=23 Identities=26% Similarity=0.326 Sum_probs=16.2
Q ss_pred CHHHHHHHHHHcCCccEEEecCCC
Q 037019 1 GLWEAMEVCQRLGLTKFIGVSNFS 24 (175)
Q Consensus 1 e~~~~l~~l~~~GkIr~iGvS~~~ 24 (175)
++.+.|++|+++|..-.| +||-+
T Consensus 33 gv~e~L~~Lk~~g~~l~I-~Tn~~ 55 (181)
T PRK08942 33 GSIEAIARLKQAGYRVVV-ATNQS 55 (181)
T ss_pred CHHHHHHHHHHCCCEEEE-EeCCc
Confidence 467889999999855444 66643
No 230
>PLN03244 alpha-amylase; Provisional
Probab=21.53 E-value=81 Score=29.35 Aligned_cols=21 Identities=10% Similarity=0.048 Sum_probs=18.4
Q ss_pred HHHHHHHHhCCCeEEEecCCC
Q 037019 53 RQLREFCKSKSIIVNVFSPLG 73 (175)
Q Consensus 53 ~~~~~~~~~~gi~vi~~~~l~ 73 (175)
+.+++.|+++||+||-=.+..
T Consensus 444 K~LVD~aH~~GI~VILDvV~N 464 (872)
T PLN03244 444 KRLVDEAHGLGLLVFLDIVHS 464 (872)
T ss_pred HHHHHHHHHCCCEEEEEecCc
Confidence 679999999999999877764
No 231
>PRK00011 glyA serine hydroxymethyltransferase; Reviewed
Probab=21.45 E-value=2.9e+02 Score=22.84 Aligned_cols=58 Identities=12% Similarity=0.012 Sum_probs=34.7
Q ss_pred CccEEEec----CCCHHHHHHHHHhCCCCceEeccccCccc-ccHHHHHHHHhCCCeEEEecC
Q 037019 14 LTKFIGVS----NFSSKKIEALLAFSTIPPSVNQVEMNPAW-QQRQLREFCKSKSIIVNVFSP 71 (175)
Q Consensus 14 kIr~iGvS----~~~~~~i~~~~~~~~~~~~~~q~~~~~~~-~~~~~~~~~~~~gi~vi~~~~ 71 (175)
+++.+++. ..+++.+++.+...+.+..++-...+... .-.++.+.|+++|+.++.=..
T Consensus 139 ~~~~~~~~~~~~~~d~~~l~~~i~~~~~k~v~~~~~~~~~~~~~~~I~~la~~~~~~livD~a 201 (416)
T PRK00011 139 NVVSYGVDEETGLIDYDEVEKLALEHKPKLIIAGASAYSRPIDFKRFREIADEVGAYLMVDMA 201 (416)
T ss_pred eEeecCcCcccCCcCHHHHHHHHHhcCCCEEEECCCcCCCccCHHHHHHHHHHcCCEEEEECc
Confidence 45566654 35788888877543334444322222222 226799999999988876554
No 232
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=21.45 E-value=3.8e+02 Score=20.51 Aligned_cols=58 Identities=9% Similarity=-0.106 Sum_probs=32.4
Q ss_pred CccEEEecCCCHHHHHHHHHhCCCCceEeccccCcccc------cHHHHHHHHhCC-CeEEEecCC
Q 037019 14 LTKFIGVSNFSSKKIEALLAFSTIPPSVNQVEMNPAWQ------QRQLREFCKSKS-IIVNVFSPL 72 (175)
Q Consensus 14 kIr~iGvS~~~~~~i~~~~~~~~~~~~~~q~~~~~~~~------~~~~~~~~~~~g-i~vi~~~~l 72 (175)
.=..||+|+|+.+++.++.+.. .+...+=--|.--.. ..+.+...++.. +++++.+.+
T Consensus 103 ~~~iIG~S~h~~eea~~A~~~g-~DYv~~GpifpT~tK~~~~~~G~~~l~~~~~~~~iP~vAIGGi 167 (211)
T COG0352 103 PGLIIGLSTHDLEEALEAEELG-ADYVGLGPIFPTSTKPDAPPLGLEGLREIRELVNIPVVAIGGI 167 (211)
T ss_pred CCCEEEeecCCHHHHHHHHhcC-CCEEEECCcCCCCCCCCCCccCHHHHHHHHHhCCCCEEEEcCC
Confidence 3347999999999999988653 122222212221111 134555555555 777775544
No 233
>KOG2019 consensus Metalloendoprotease HMP1 (insulinase superfamily) [General function prediction only; Posttranslational modification, protein turnover, chaperones]
Probab=21.43 E-value=5.6e+02 Score=23.91 Aligned_cols=52 Identities=19% Similarity=0.227 Sum_probs=28.3
Q ss_pred CCCHHH-HHHHHHHhCCcEEEe----cCCCHHHHHHhhcc---cC--cccCHHHHHHHhccCC
Q 037019 98 GETVAQ-VCLRWIIEQGAIVIA----KSFNKERLKENLDI---FD--WALTDHDYDRINQIPQ 150 (175)
Q Consensus 98 g~~~~q-~al~~~l~~~~~~i~----G~~~~~~l~enl~a---~~--~~L~~~~~~~i~~~~~ 150 (175)
+.+.-| +.=.|++.+++...+ ...-.+.+ +.-++ .+ ..||++|++.|.+...
T Consensus 469 ~~~lfq~lIkkYilnn~h~~t~smqpd~e~~~~~-~~eE~tkL~ek~~alteeD~~ei~k~~~ 530 (998)
T KOG2019|consen 469 SKKLFQPLIKKYILNNPHCFTFSMQPDPEFAEKL-EQEEATKLEEKKAALTEEDLAEIAKAGE 530 (998)
T ss_pred chhHHHHHHHHHHhcCCceEEEEecCCchhhHHH-HHHHHHHHHHHHhhCCHHHHHHHHHHHH
Confidence 444444 445699999833322 22222222 22222 11 2899999999988754
No 234
>cd08612 GDPD_GDE4 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE4 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 1 (GDPD1)) and similar proteins. Mammalian GDE4 is a transmembrane protein whose cellular function has not yet been elucidated. It is expressed widely, including in placenta, liver, kidney, pancreas, spleen, thymus, ovary, small intestine and peripheral blood leukocytes. It is also expressed in the growth cones in neuroblastoma Neuro2a cells, which suggests GDE4 may play some distinct role from other members of the GDE family.
Probab=21.41 E-value=4.2e+02 Score=21.07 Aligned_cols=30 Identities=3% Similarity=0.056 Sum_probs=20.6
Q ss_pred HHHHHHcCCccEEEecCCCHHHHHHHHHhC
Q 037019 6 MEVCQRLGLTKFIGVSNFSSKKIEALLAFS 35 (175)
Q Consensus 6 l~~l~~~GkIr~iGvS~~~~~~i~~~~~~~ 35 (175)
++.+++.|.-..+=+|+|+.+.+.++.+..
T Consensus 153 ~~~i~~~~~~~~v~isSF~~~~L~~~~~~~ 182 (300)
T cd08612 153 SDLVRKYKREDITVWGSFNDEIVKKCHKEN 182 (300)
T ss_pred HHHHHHcCCCCcEEEEeCCHHHHHHHHHhC
Confidence 334445566666778899988888776654
No 235
>PF12816 Vps8: Golgi CORVET complex core vacuolar protein 8
Probab=21.38 E-value=73 Score=23.99 Aligned_cols=57 Identities=19% Similarity=0.272 Sum_probs=34.1
Q ss_pred HHHHHHHHHcCCccEEEecCCCHHHHHHHHHhCC--CCc-eEeccccC--ccccc-HHHHHHHHhCCC
Q 037019 3 WEAMEVCQRLGLTKFIGVSNFSSKKIEALLAFST--IPP-SVNQVEMN--PAWQQ-RQLREFCKSKSI 64 (175)
Q Consensus 3 ~~~l~~l~~~GkIr~iGvS~~~~~~i~~~~~~~~--~~~-~~~q~~~~--~~~~~-~~~~~~~~~~gi 64 (175)
++.|+...-+|+|+.+ ++..+..+++... ..+ .+-|+-.+ +-.-+ ..++..|+++|+
T Consensus 5 le~Lep~Il~~~i~~l-----pp~v~k~lv~~y~~~~~~~~lE~lI~~LD~~~LDidq~i~lC~~~~L 67 (196)
T PF12816_consen 5 LECLEPFILSGKIKSL-----PPEVFKALVEHYASKGRLERLEQLILHLDPSSLDIDQVIKLCKKHGL 67 (196)
T ss_pred HHHHHHHHHcCCCCCC-----CHHHHHHHHHHHHHCCCHHHHHHHHHhCCHHhcCHHHHHHHHHHCCC
Confidence 6789999999999865 5666666654331 111 11122222 22223 569999999973
No 236
>cd00740 MeTr MeTr subgroup of pterin binding enzymes. This family includes cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=21.37 E-value=4e+02 Score=20.82 Aligned_cols=58 Identities=16% Similarity=0.045 Sum_probs=40.9
Q ss_pred EEEecCCCHHHHHHHHHhCCCCceEeccccCccc-ccHHHHHHHHhCCCeEEEecCCCC
Q 037019 17 FIGVSNFSSKKIEALLAFSTIPPSVNQVEMNPAW-QQRQLREFCKSKSIIVNVFSPLGA 74 (175)
Q Consensus 17 ~iGvS~~~~~~i~~~~~~~~~~~~~~q~~~~~~~-~~~~~~~~~~~~gi~vi~~~~l~~ 74 (175)
-|.|-+++++.++++++.+.....++-+.....+ ....+++.++++|..++.+..-..
T Consensus 72 piSIDT~~~~v~e~aL~~~~G~~iINsIs~~~~~e~~~~~~~~~~~~~~~vV~m~~~~~ 130 (252)
T cd00740 72 PLMLDSTNWEVIEAGLKCCQGKCVVNSINLEDGEERFLKVARLAKEHGAAVVVLAFDEQ 130 (252)
T ss_pred cEEeeCCcHHHHHHHHhhCCCCcEEEeCCCCCCccccHHHHHHHHHhCCCEEEeccCCC
Confidence 3788899999999999875333455555433221 246788999999999998865433
No 237
>cd03317 NAAAR N-acylamino acid racemase (NAAAR), an octameric enzyme that catalyzes the racemization of N-acylamino acids. NAAARs act on a broad range of N-acylamino acids rather than amino acids. Enantiopure amino acids are of industrial interest as chiral building blocks for antibiotics, herbicides, and drugs. NAAAR is a member of the enolase superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=21.36 E-value=4.5e+02 Score=21.34 Aligned_cols=66 Identities=11% Similarity=0.068 Sum_probs=42.8
Q ss_pred HHHHHHHHHcCC-ccEEEecCCCHHHHHHHHHhCCCCceEeccccCccc---ccHHHHHHHHhCCCeEEEec
Q 037019 3 WEAMEVCQRLGL-TKFIGVSNFSSKKIEALLAFSTIPPSVNQVEMNPAW---QQRQLREFCKSKSIIVNVFS 70 (175)
Q Consensus 3 ~~~l~~l~~~Gk-Ir~iGvS~~~~~~i~~~~~~~~~~~~~~q~~~~~~~---~~~~~~~~~~~~gi~vi~~~ 70 (175)
++.+.+++++-. =-+.|=|-+++..+..+++.. -.+++|+....+- ....+..+|+.+|+.++..+
T Consensus 217 ~~~~~~l~~~~~~pia~dEs~~~~~~~~~~~~~~--~~d~~~ik~~~~GGit~~~~i~~~A~~~gi~~~~g~ 286 (354)
T cd03317 217 LIDHAELQKLLKTPICLDESIQSAEDARKAIELG--ACKIINIKPGRVGGLTEALKIHDLCQEHGIPVWCGG 286 (354)
T ss_pred HHHHHHHHhhcCCCEEeCCccCCHHHHHHHHHcC--CCCEEEecccccCCHHHHHHHHHHHHHcCCcEEecC
Confidence 456677766533 235556668888888887654 2466676665433 23678888899998887643
No 238
>COG0422 ThiC Thiamine biosynthesis protein ThiC [Coenzyme metabolism]
Probab=21.30 E-value=5.2e+02 Score=22.02 Aligned_cols=66 Identities=18% Similarity=0.245 Sum_probs=38.8
Q ss_pred HHHHHHHHHcCCccEEEecCCCHHHHHHHHHhCCCCceEeccccCccccc-HHHHHHHHhCCCeEEEecCCCCCCCCC
Q 037019 3 WEAMEVCQRLGLTKFIGVSNFSSKKIEALLAFSTIPPSVNQVEMNPAWQQ-RQLREFCKSKSIIVNVFSPLGAVGSCW 79 (175)
Q Consensus 3 ~~~l~~l~~~GkIr~iGvS~~~~~~i~~~~~~~~~~~~~~q~~~~~~~~~-~~~~~~~~~~gi~vi~~~~l~~~G~l~ 79 (175)
++.++.+++.|++ .|+-+-.-+.+...+-.. ..=|++... ..+++.|++++|.+.-.-.|.. |.+.
T Consensus 166 ~~~~~~~~~~~R~--~giVSRGGsi~a~Wml~~--------~~ENply~~fd~lleI~k~yDvtlSLGDglRP-G~i~ 232 (432)
T COG0422 166 LEYVPRTKRSGRV--TGIVSRGGSIMAAWMLHN--------HKENPLYEHFDELLEIFKEYDVTLSLGDGLRP-GCIA 232 (432)
T ss_pred HHHHHHHHhcCce--eeeeccchHHHHHHHHHc--------CCcCchhhhHHHHHHHHHHhCeeeeccCCCCC-Cccc
Confidence 3455566665543 454444444443332221 122556665 7899999999998887777766 6553
No 239
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=21.26 E-value=2.5e+02 Score=18.36 Aligned_cols=37 Identities=24% Similarity=0.257 Sum_probs=23.6
Q ss_pred CHHHHHHHHHHcCCccEEEecC---CCHHHHHHHHHhCCCC
Q 037019 1 GLWEAMEVCQRLGLTKFIGVSN---FSSKKIEALLAFSTIP 38 (175)
Q Consensus 1 e~~~~l~~l~~~GkIr~iGvS~---~~~~~i~~~~~~~~~~ 38 (175)
++.++++.|+++|+ +.+=+|| .+++.+.+-+...+++
T Consensus 18 ga~e~l~~L~~~g~-~~~~lTNns~~s~~~~~~~L~~~Gi~ 57 (101)
T PF13344_consen 18 GAVEALDALRERGK-PVVFLTNNSSRSREEYAKKLKKLGIP 57 (101)
T ss_dssp THHHHHHHHHHTTS-EEEEEES-SSS-HHHHHHHHHHTTTT
T ss_pred CHHHHHHHHHHcCC-CEEEEeCCCCCCHHHHHHHHHhcCcC
Confidence 46788999999985 4444555 4556666555666654
No 240
>PRK05660 HemN family oxidoreductase; Provisional
Probab=21.25 E-value=4.3e+02 Score=21.89 Aligned_cols=90 Identities=19% Similarity=0.156 Sum_probs=51.9
Q ss_pred CCccEEEecC-----CCHHHHHHHHHhCC----C-CceEeccccCcccccHHHHHHHHhCCCeEEEecCCCCCCCCCCCc
Q 037019 13 GLTKFIGVSN-----FSSKKIEALLAFST----I-PPSVNQVEMNPAWQQRQLREFCKSKSIIVNVFSPLGAVGSCWGTN 82 (175)
Q Consensus 13 GkIr~iGvS~-----~~~~~i~~~~~~~~----~-~~~~~q~~~~~~~~~~~~~~~~~~~gi~vi~~~~l~~~G~l~~~~ 82 (175)
..|+.|-+.+ .+++.+.++++... . +-.-+-++-|+-.-..+.+...++.|+.-+..+.-+.
T Consensus 57 ~~v~ti~~GGGtPs~l~~~~l~~ll~~l~~~~~~~~~~eit~e~np~~l~~e~l~~Lk~~Gv~risiGvqS~-------- 128 (378)
T PRK05660 57 REVHSIFIGGGTPSLFSAEAIQRLLDGVRARLPFAPDAEITMEANPGTVEADRFVGYQRAGVNRISIGVQSF-------- 128 (378)
T ss_pred CceeEEEeCCCccccCCHHHHHHHHHHHHHhCCCCCCcEEEEEeCcCcCCHHHHHHHHHcCCCEEEeccCcC--------
Confidence 3566666554 34566777665432 1 1123455666666678999999999988887766654
Q ss_pred cccChHHHHHHHHHhCCCHHHHHHHHHHhCC
Q 037019 83 QVMNNEALKQIADAHGETVAQVCLRWIIEQG 113 (175)
Q Consensus 83 ~~~~~~~l~~~a~~~g~~~~q~al~~~l~~~ 113 (175)
..+.+..+.+.+....+.-++..+...+
T Consensus 129 ---~~~~L~~l~r~~~~~~~~~ai~~~~~~G 156 (378)
T PRK05660 129 ---SEEKLKRLGRIHGPDEAKRAAKLAQGLG 156 (378)
T ss_pred ---CHHHHHHhCCCCCHHHHHHHHHHHHHcC
Confidence 2344444433333333334555555544
No 241
>PF10668 Phage_terminase: Phage terminase small subunit; InterPro: IPR018925 This entry describes the terminase small subunit from Enterococcus phage phiFL1A, related proteins in other bacteriophage, and prophage regions of bacterial genomes. Packaging of double-stranded viral DNA concatemers requires interaction of the prohead with virus DNA. This process is mediated by a phage-encoded DNA recognition and terminase protein. The terminase enzymes described so far, which are hetero-oligomers composed of a small and a large subunit, do not have a significant level of sequence homology. The small terminase subunit is thought to form a nucleoprotein structure that helps to position the terminase large subunit at the packaging initiation site [].
Probab=21.24 E-value=1e+02 Score=18.63 Aligned_cols=18 Identities=28% Similarity=0.337 Sum_probs=14.8
Q ss_pred HHHHHHHHHhCCCHHHHH
Q 037019 88 EALKQIADAHGETVAQVC 105 (175)
Q Consensus 88 ~~l~~~a~~~g~~~~q~a 105 (175)
-.+.+||+++|+++.++.
T Consensus 23 i~lkdIA~~Lgvs~~tIr 40 (60)
T PF10668_consen 23 IKLKDIAEKLGVSESTIR 40 (60)
T ss_pred ccHHHHHHHHCCCHHHHH
Confidence 357899999999988865
No 242
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=21.20 E-value=1.9e+02 Score=23.29 Aligned_cols=42 Identities=12% Similarity=0.129 Sum_probs=28.2
Q ss_pred CHHHHHHHHHhCCCCceEeccccCccccc------HHHHHHHHhCCCeEEE
Q 037019 24 SSKKIEALLAFSTIPPSVNQVEMNPAWQQ------RQLREFCKSKSIIVNV 68 (175)
Q Consensus 24 ~~~~i~~~~~~~~~~~~~~q~~~~~~~~~------~~~~~~~~~~gi~vi~ 68 (175)
+.+.+.++++. .|..+++.-|-+..+ +++.++|+..|+.|=+
T Consensus 86 ~~e~i~~ai~~---GftSVMiDgS~lp~eeNi~~T~~vv~~Ah~~gvsVEa 133 (284)
T PRK12737 86 DLDDIKKKVRA---GIRSVMIDGSHLSFEENIAIVKEVVEFCHRYDASVEA 133 (284)
T ss_pred CHHHHHHHHHc---CCCeEEecCCCCCHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 34555555554 466777776655443 6899999999987754
No 243
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=21.14 E-value=5.2e+02 Score=22.02 Aligned_cols=62 Identities=6% Similarity=-0.038 Sum_probs=38.3
Q ss_pred CCccEEEe-----cCCCHHHHHHHHHhCC----CCc-eEeccccCcccccHHHHHHHHhCCCeEEEecCCCC
Q 037019 13 GLTKFIGV-----SNFSSKKIEALLAFST----IPP-SVNQVEMNPAWQQRQLREFCKSKSIIVNVFSPLGA 74 (175)
Q Consensus 13 GkIr~iGv-----S~~~~~~i~~~~~~~~----~~~-~~~q~~~~~~~~~~~~~~~~~~~gi~vi~~~~l~~ 74 (175)
+.|+.|=+ |..+++++.++++... ... .-+-++-++-.-+.+.++.+++.|+.-+..+.-..
T Consensus 113 ~~i~~iy~GGGTPs~L~~~~l~~ll~~i~~~~~l~~~~eitiE~~p~~~t~e~l~~l~~aGvnRiSiGVQSf 184 (449)
T PRK09058 113 APIHAVYFGGGTPTALSAEDLARLITALREYLPLAPDCEITLEGRINGFDDEKADAALDAGANRFSIGVQSF 184 (449)
T ss_pred CeeeEEEECCCccccCCHHHHHHHHHHHHHhCCCCCCCEEEEEeCcCcCCHHHHHHHHHcCCCEEEecCCcC
Confidence 45665544 3346778877765442 111 12344555555568899999999988777665543
No 244
>PF02570 CbiC: Precorrin-8X methylmutase; InterPro: IPR003722 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CbiC and CobH precorrin-8X methylmutase (also known as precorrin isomerase, 5.4.1.2 from EC), both as stand-alone enzymes and when CobJ forms part of a bifunctional enzyme. CobH and CbiC from the aerobic and anaerobic pathways, respectively, catalyse a methyl rearrangement in precorrin-8 that moves the methyl group from C-11 to C-12 to produce hydrogenobyrinic acid []. Hydrogenobyrinic acid now contains all the major framework alterations associated with corrin synthesis []. CobH and CbiC can sometimes be fused to other enzymes in the cobalamin pathway to make bifunctional enzymes: e.g., with CobJ/CibH (precorrin-3B C17-methylase/precorrin isomerase, IPR014422 from INTERPRO) and with CbiX (precorrin isomerase, IPR012067 from INTERPRO).; GO: 0016993 precorrin-8X methylmutase activity, 0009236 cobalamin biosynthetic process; PDB: 1V9C_B 1I1H_A 1F2V_A 1OU0_B 2AFV_A 2AFR_A 3E7D_D.
Probab=21.11 E-value=2.6e+02 Score=21.27 Aligned_cols=76 Identities=18% Similarity=0.150 Sum_probs=44.3
Q ss_pred HHHHHHhCCCeEEEecCCCCCCCCC------CCc--cccChHHHHHHHHHhCCCHHHHHHHHHHhCC--cEEEecCCCHH
Q 037019 55 LREFCKSKSIIVNVFSPLGAVGSCW------GTN--QVMNNEALKQIADAHGETVAQVCLRWIIEQG--AIVIAKSFNKE 124 (175)
Q Consensus 55 ~~~~~~~~gi~vi~~~~l~~~G~l~------~~~--~~~~~~~l~~~a~~~g~~~~q~al~~~l~~~--~~~i~G~~~~~ 124 (175)
.++.. +.|..++.-..+...|+-. +.. -+..++...+++++.|.|.+..+++...... .++++|- .|-
T Consensus 53 g~~AL-~~g~~IvtDv~Mv~aGI~~~~l~~~g~~v~c~i~d~~v~~~A~~~g~TRs~aa~~~a~~~~~~~I~vIGN-APT 130 (198)
T PF02570_consen 53 GVEAL-RAGAPIVTDVNMVAAGINKRRLAKLGNEVYCYIDDPEVAELAKEEGITRSAAAMRKAAKELPGAIVVIGN-APT 130 (198)
T ss_dssp HHHHH-HTT-EEEESSHHHHHHS-HHHHHTCT-EEEECTTSHHHHHHHHHHTS-HHHHHHHHHHCTTTTCEEEESS--HH
T ss_pred HHHHH-HCCCeEEEchHHHHHHhCHhhHHHcCCcEEEECCCCchHHHHhhcCCcHHHHHHHHHHHHcCCcEEEEeC-cHH
Confidence 44444 4467777655554324320 111 1345688999999999999999999998854 5555553 344
Q ss_pred HHHHhhcc
Q 037019 125 RLKENLDI 132 (175)
Q Consensus 125 ~l~enl~a 132 (175)
-|-+.++.
T Consensus 131 AL~~ll~l 138 (198)
T PF02570_consen 131 ALFELLEL 138 (198)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444443
No 245
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=21.08 E-value=2.8e+02 Score=18.93 Aligned_cols=35 Identities=31% Similarity=0.320 Sum_probs=26.7
Q ss_pred CHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHhCC
Q 037019 1 GLWEAMEVCQRLGLTKFIGVSNFSSKKIEALLAFST 36 (175)
Q Consensus 1 e~~~~l~~l~~~GkIr~iGvS~~~~~~i~~~~~~~~ 36 (175)
++.+.|+.|+++| ++-+=+||.+...+...++..+
T Consensus 81 ~~~~~L~~l~~~~-~~~~i~Sn~~~~~~~~~l~~~~ 115 (176)
T PF13419_consen 81 GVRELLERLKAKG-IPLVIVSNGSRERIERVLERLG 115 (176)
T ss_dssp THHHHHHHHHHTT-SEEEEEESSEHHHHHHHHHHTT
T ss_pred hhhhhhhhccccc-ceeEEeecCCcccccccccccc
Confidence 4677889998775 5666678888888888877665
No 246
>PRK08045 cystathionine gamma-synthase; Provisional
Probab=21.07 E-value=4.9e+02 Score=21.63 Aligned_cols=70 Identities=11% Similarity=0.093 Sum_probs=42.2
Q ss_pred HHHHHHHHcCCccEEEecCCCHHHHHHHHHhCCCCceEeccccCcccc---cHHHHHHHHhCCCeEEEecCCCC
Q 037019 4 EAMEVCQRLGLTKFIGVSNFSSKKIEALLAFSTIPPSVNQVEMNPAWQ---QRQLREFCKSKSIIVNVFSPLGA 74 (175)
Q Consensus 4 ~~l~~l~~~GkIr~iGvS~~~~~~i~~~~~~~~~~~~~~q~~~~~~~~---~~~~~~~~~~~gi~vi~~~~l~~ 74 (175)
..+..+...|-+.-.-+...+++.+.+.+.. +.+..++..+-|+.-. -..+.+.|+++|+.++.=...+.
T Consensus 106 ~~~~~~~~~~gi~v~~vd~~d~e~l~~~l~~-~tklV~l~sP~NPtG~v~di~~I~~ia~~~g~~vivDeay~~ 178 (386)
T PRK08045 106 RLFDSLAKRGCYRVLFVDQGDEQALRAALAE-KPKLVLVESPSNPLLRVVDIAKICHLAREAGAVSVVDNTFLS 178 (386)
T ss_pred HHHHHHHhhCCeEEEEeCCCCHHHHHHhccc-CCeEEEEECCCCCCCEecCHHHHHHHHHHcCCEEEEECCCCc
Confidence 3444444444333333445667777776643 3455566556665432 26799999999998887777655
No 247
>PF07862 Nif11: Nitrogen fixation protein of unknown function; InterPro: IPR012903 This domain is found in the cyanobacteria, and the nitrogen-fixing proteobacterium Azotobacter vinelandii and may be involved in nitrogen fixation, but no role has been assigned [].
Probab=20.80 E-value=1.1e+02 Score=17.12 Aligned_cols=23 Identities=13% Similarity=0.140 Sum_probs=14.5
Q ss_pred CCCHHHHHHhhcccCcccCHHHH
Q 037019 120 SFNKERLKENLDIFDWALTDHDY 142 (175)
Q Consensus 120 ~~~~~~l~enl~a~~~~L~~~~~ 142 (175)
+.+++++....+..++.+|.+|+
T Consensus 26 ~~~~~e~~~lA~~~Gy~ft~~el 48 (49)
T PF07862_consen 26 CQNPEEVVALAREAGYDFTEEEL 48 (49)
T ss_pred cCCHHHHHHHHHHcCCCCCHHHh
Confidence 45666666666666666666654
No 248
>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC. No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC.
Probab=20.78 E-value=2e+02 Score=19.60 Aligned_cols=33 Identities=12% Similarity=0.070 Sum_probs=22.5
Q ss_pred HHHHHHHHHHcCCccEEEecCC-CHHHHHHHHHhC
Q 037019 2 LWEAMEVCQRLGLTKFIGVSNF-SSKKIEALLAFS 35 (175)
Q Consensus 2 ~~~~l~~l~~~GkIr~iGvS~~-~~~~i~~~~~~~ 35 (175)
+.+.|+.|+++| ++-.-+||- .......+++..
T Consensus 34 v~e~L~~Lk~~g-~~l~i~Sn~~~~~~~~~~l~~~ 67 (128)
T TIGR01681 34 IRDKLQTLKKNG-FLLALASYNDDPHVAYELLKIF 67 (128)
T ss_pred HHHHHHHHHHCC-eEEEEEeCCCCHHHHHHHHHhc
Confidence 567889999998 454456665 676666666544
No 249
>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion]
Probab=20.69 E-value=3.8e+02 Score=24.84 Aligned_cols=24 Identities=21% Similarity=0.260 Sum_probs=21.9
Q ss_pred ccHHHHHHHHhCCCeEEEecCCCC
Q 037019 51 QQRQLREFCKSKSIIVNVFSPLGA 74 (175)
Q Consensus 51 ~~~~~~~~~~~~gi~vi~~~~l~~ 74 (175)
.-.+.++||+++|..+|....+++
T Consensus 172 t~~EA~eF~k~yG~PvI~KAAyGG 195 (1176)
T KOG0369|consen 172 TVEEALEFVKEYGLPVIIKAAYGG 195 (1176)
T ss_pred cHHHHHHHHHhcCCcEEEeecccC
Confidence 347899999999999999999988
No 250
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=20.69 E-value=2.4e+02 Score=21.10 Aligned_cols=58 Identities=16% Similarity=0.076 Sum_probs=37.3
Q ss_pred HHHHHHHHhCCCeEEE-ecCCCCCCCCCCC------cc--c--------cChHHHHHHHHHhCCCHHHHHHHHHHh
Q 037019 53 RQLREFCKSKSIIVNV-FSPLGAVGSCWGT------NQ--V--------MNNEALKQIADAHGETVAQVCLRWIIE 111 (175)
Q Consensus 53 ~~~~~~~~~~gi~vi~-~~~l~~~G~l~~~------~~--~--------~~~~~l~~~a~~~g~~~~q~al~~~l~ 111 (175)
.+--+.++++||.++. +..-++ |...+. .. . .....+-+.++++++++.+.|+..++.
T Consensus 122 ~~~~~~L~~~Gi~~~Pd~~~NaG-Gv~~~~~e~~~~~~~~~~~~~~~~~~~~~~v~~~a~~~~~~~~~aA~~~a~~ 196 (200)
T cd01075 122 PRHGQMLHERGILYAPDYVVNAG-GLINVADELYGGNEARVLAKVEAIYDTLLEIFAQAKQDGITTLEAADRMAEE 196 (200)
T ss_pred HhHHHHHHHCCCEEeCceeeeCc-CceeehhHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHH
Confidence 4566777899999999 666677 766321 10 0 011334455777889998888776654
No 251
>PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional
Probab=20.63 E-value=3.6e+02 Score=22.13 Aligned_cols=64 Identities=3% Similarity=-0.089 Sum_probs=41.3
Q ss_pred CCccEEEec---C--CCHHHHHHHHHhC------CCCceEeccccCcc-cc--cHHHHHHHHhCCCeEEEecCCCCCCC
Q 037019 13 GLTKFIGVS---N--FSSKKIEALLAFS------TIPPSVNQVEMNPA-WQ--QRQLREFCKSKSIIVNVFSPLGAVGS 77 (175)
Q Consensus 13 GkIr~iGvS---~--~~~~~i~~~~~~~------~~~~~~~q~~~~~~-~~--~~~~~~~~~~~gi~vi~~~~l~~~G~ 77 (175)
.+++.+.+. + .+++.+++.++.. +.+..++....+.. .. -.++.+.|+++|+.++.-...+. |.
T Consensus 124 ~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~lV~l~~~~~~tG~~~~l~~I~~la~~~g~~livD~a~~~-g~ 201 (387)
T PRK09331 124 LNVREVPKTGYPEYKITPEAYAEKIEEVKEETGKPPALALLTHVDGNYGNLADAKKVAKVAHEYGIPFLLNGAYTV-GR 201 (387)
T ss_pred CEEEEEeCccCcCCCcCHHHHHHHHHHhhhccCCCCEEEEEECCCCCCcccccHHHHHHHHHHcCCEEEEECCccc-CC
Confidence 356666652 1 5788888877542 34455555444422 22 26899999999999998888776 54
No 252
>cd08556 GDPD Glycerophosphodiester phosphodiesterase domain as found in prokaryota and eukaryota, and similar proteins. The typical glycerophosphodiester phosphodiesterase domain (GDPD) consists of a TIM barrel and a small insertion domain named the GDPD-insertion (GDPD-I) domain, which is specific for GDPD proteins. This family corresponds to both typical GDPD domain and GDPD-like domain which lacks the GDPD-I region. Members in this family mainly consist of a large family of prokaryotic and eukaryotic glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), and a number of uncharacterized homologs. Sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria are also included in this family. GDPD plays an essential role in glycerol metabolism and catalyzes the hydrolysis of glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcoho
Probab=20.57 E-value=3.2e+02 Score=19.38 Aligned_cols=64 Identities=19% Similarity=0.300 Sum_probs=38.6
Q ss_pred HHHHHHcCCccEEEecCCCHHHHHHHHHhCC-CCc----------------------eEeccccCcccccHHHHHHHHhC
Q 037019 6 MEVCQRLGLTKFIGVSNFSSKKIEALLAFST-IPP----------------------SVNQVEMNPAWQQRQLREFCKSK 62 (175)
Q Consensus 6 l~~l~~~GkIr~iGvS~~~~~~i~~~~~~~~-~~~----------------------~~~q~~~~~~~~~~~~~~~~~~~ 62 (175)
++.+++-|.-+.+=++.|+++.+..+.+..+ .+. ..+.+.+. .....+++.++++
T Consensus 82 ~~~i~~~~~~~~v~i~s~~~~~l~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~i~~~~~~ 159 (189)
T cd08556 82 AELLREYGLEERVVVSSFDHEALRALKELDPEVPTGLLVDKPPLDPLLAELARALGADAVNPHYK--LLTPELVRAAHAA 159 (189)
T ss_pred HHHHHHcCCcCCEEEEeCCHHHHHHHHHhCCCCcEEEEeecCcccchhhhHHHhcCCeEEccChh--hCCHHHHHHHHHc
Confidence 3344455777888888888888877766543 111 11111111 1126788888888
Q ss_pred CCeEEEecC
Q 037019 63 SIIVNVFSP 71 (175)
Q Consensus 63 gi~vi~~~~ 71 (175)
|+.+++|..
T Consensus 160 g~~v~~wtv 168 (189)
T cd08556 160 GLKVYVWTV 168 (189)
T ss_pred CCEEEEEcC
Confidence 888888865
No 253
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=20.50 E-value=3.4e+02 Score=21.25 Aligned_cols=59 Identities=10% Similarity=0.039 Sum_probs=34.5
Q ss_pred CccEEEecCCCHHHHHHHHH---hCCCCceEeccccCcccccHHHHHHHH----hCCCeEEEecCC
Q 037019 14 LTKFIGVSNFSSKKIEALLA---FSTIPPSVNQVEMNPAWQQRQLREFCK----SKSIIVNVFSPL 72 (175)
Q Consensus 14 kIr~iGvS~~~~~~i~~~~~---~~~~~~~~~q~~~~~~~~~~~~~~~~~----~~gi~vi~~~~l 72 (175)
..-..|++..+.....+..+ ..+.+-.++.-++.....+.++++|.+ ..+++++.|..-
T Consensus 70 ~~vi~gv~~~~~~~~~~~a~~a~~~G~d~v~~~~P~~~~~~~~~l~~~~~~ia~~~~~pi~lYn~P 135 (284)
T cd00950 70 VPVIAGTGSNNTAEAIELTKRAEKAGADAALVVTPYYNKPSQEGLYAHFKAIAEATDLPVILYNVP 135 (284)
T ss_pred CcEEeccCCccHHHHHHHHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHhcCCCCEEEEECh
Confidence 44568999877766554443 334444444445443333466666654 358899988654
No 254
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=20.47 E-value=2e+02 Score=23.12 Aligned_cols=41 Identities=10% Similarity=-0.003 Sum_probs=30.2
Q ss_pred CHHHHHHHHHhCCCCceEeccccCccccc------HHHHHHHHhCCCeEE
Q 037019 24 SSKKIEALLAFSTIPPSVNQVEMNPAWQQ------RQLREFCKSKSIIVN 67 (175)
Q Consensus 24 ~~~~i~~~~~~~~~~~~~~q~~~~~~~~~------~~~~~~~~~~gi~vi 67 (175)
+.+.+.++++. .+..+|++-+-+..+ .++.++|+..|+.+-
T Consensus 88 ~~~~i~~ai~~---GftSVm~d~S~l~~eEni~~t~~v~~~a~~~gv~vE 134 (293)
T PRK07315 88 HYEDALECIEV---GYTSIMFDGSHLPVEENLKLAKEVVEKAHAKGISVE 134 (293)
T ss_pred CHHHHHHHHHc---CCCEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCEEE
Confidence 34555666553 578899988876653 679999999998883
No 255
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=20.43 E-value=2.3e+02 Score=22.65 Aligned_cols=42 Identities=12% Similarity=0.045 Sum_probs=30.1
Q ss_pred CHHHHHHHHHhCCCCceEeccccCccccc------HHHHHHHHhCCCeEEE
Q 037019 24 SSKKIEALLAFSTIPPSVNQVEMNPAWQQ------RQLREFCKSKSIIVNV 68 (175)
Q Consensus 24 ~~~~i~~~~~~~~~~~~~~q~~~~~~~~~------~~~~~~~~~~gi~vi~ 68 (175)
+.+.+.++++. .|..+++.-|-+..+ +++.++|+..||.|=+
T Consensus 81 ~~~~i~~ai~~---GftSVMiD~S~l~~eeNi~~t~~vv~~ah~~gv~VEa 128 (276)
T cd00947 81 SFELIKRAIRA---GFSSVMIDGSHLPFEENVAKTKEVVELAHAYGVSVEA 128 (276)
T ss_pred CHHHHHHHHHh---CCCEEEeCCCCCCHHHHHHHHHHHHHHHHHcCCeEEE
Confidence 45666666654 477788877766543 6799999999987644
No 256
>PF14502 HTH_41: Helix-turn-helix domain
Probab=20.43 E-value=1.9e+02 Score=16.66 Aligned_cols=31 Identities=23% Similarity=0.407 Sum_probs=24.0
Q ss_pred hHHHHHHHHHhCCCH--HHHHHHHHHhCCcEEE
Q 037019 87 NEALKQIADAHGETV--AQVCLRWIIEQGAIVI 117 (175)
Q Consensus 87 ~~~l~~~a~~~g~~~--~q~al~~~l~~~~~~i 117 (175)
-+.+.+++++++++. .|-||+|+-..+.+.+
T Consensus 6 i~tI~e~~~~~~vs~GtiQ~Alk~Le~~gaI~L 38 (48)
T PF14502_consen 6 IPTISEYSEKFGVSRGTIQNALKFLEENGAIKL 38 (48)
T ss_pred cCCHHHHHHHhCcchhHHHHHHHHHHHCCcEEe
Confidence 356788999998765 6999999988884443
No 257
>COG2355 Zn-dependent dipeptidase, microsomal dipeptidase homolog [Amino acid transport and metabolism]
Probab=20.40 E-value=3.8e+02 Score=21.97 Aligned_cols=29 Identities=7% Similarity=0.048 Sum_probs=21.0
Q ss_pred ecCCCHHHHHHhhcccCc-ccCHHHHHHHh
Q 037019 118 AKSFNKERLKENLDIFDW-ALTDHDYDRIN 146 (175)
Q Consensus 118 ~G~~~~~~l~enl~a~~~-~L~~~~~~~i~ 146 (175)
.|..++..+...++++.. ..++++++.|.
T Consensus 270 ~gled~~~l~~l~~~L~~~G~~e~~i~~i~ 299 (313)
T COG2355 270 DGLEDVGKLPNLTAALIERGYSEEEIEKIA 299 (313)
T ss_pred hhhcChhHHHHHHHHHHHcCCCHHHHHHHH
Confidence 466777777777777654 48888887764
No 258
>PF05321 HHA: Haemolysin expression modulating protein; InterPro: IPR007985 This family consists of haemolysin expression modulating protein (Hha) from Escherichia coli and its enterobacterial homologues, such as YmoA from Yersinia enterocolitica, and RmoA encoded on the R100 plasmid. These proteins act as modulators of bacterial gene expression. Members of the Hha/YmoA/RmoA family act in conjunction with members of the H-NS family, participating in the thermoregulation of different virulence factors and in plasmid transfer []. Hha, along with the chromatin-associated protein H-NS, is involved in the regulation of expression of the toxin alpha-haemolysin in response to osmolarity and temperature []. YmoA modulates the expression of various virulence factors, such as Yop proteins and YadA adhesin, in response to temperature. RmoA is a plasmid R100 modulator involved in plasmid transfer []. The HHA family of proteins display striking similarity to the oligomerization domain of the H-NS proteins.; PDB: 1JW2_A 2K5S_A 2JQT_A.
Probab=20.33 E-value=58 Score=19.49 Aligned_cols=32 Identities=16% Similarity=0.323 Sum_probs=25.0
Q ss_pred cCCCHHHHHHhhcccCcccCHHHHHHHhccCC
Q 037019 119 KSFNKERLKENLDIFDWALTDHDYDRINQIPQ 150 (175)
Q Consensus 119 G~~~~~~l~enl~a~~~~L~~~~~~~i~~~~~ 150 (175)
.+++.+-|+..++-....|+.+|+..+.++..
T Consensus 5 rcss~dtLEkv~e~~~~~L~~~e~~~f~~AaD 36 (57)
T PF05321_consen 5 RCSSLDTLEKVIEHNRYKLTDDELEAFNSAAD 36 (57)
T ss_dssp TSS-HHHHHHHHHHHHHHS-HHHHHHHHHHHH
T ss_pred ccCCHhhHHHHHHHhhCcCCHHHHHHHHHHHH
Confidence 46888999999998888999999988877654
No 259
>PLN02540 methylenetetrahydrofolate reductase
Probab=20.30 E-value=6.3e+02 Score=22.60 Aligned_cols=65 Identities=11% Similarity=0.012 Sum_probs=37.3
Q ss_pred HHHHHHHHHc-CCccEEEecCCCH------------------HHHHHHHH--hCCCCceEeccccCcccccHHHHHHHHh
Q 037019 3 WEAMEVCQRL-GLTKFIGVSNFSS------------------KKIEALLA--FSTIPPSVNQVEMNPAWQQRQLREFCKS 61 (175)
Q Consensus 3 ~~~l~~l~~~-GkIr~iGvS~~~~------------------~~i~~~~~--~~~~~~~~~q~~~~~~~~~~~~~~~~~~ 61 (175)
.+-++.+++. |..-.||+++|.. ..+..+.+ .++..+.+-|.-|.. +.-...++.|++
T Consensus 115 ~dLV~~Ir~~~gd~f~IgVAGYPEgHpe~~~~~~~~~~~~~~~dl~~Lk~KvdAGAdFiITQlfFD~-d~f~~f~~~~r~ 193 (565)
T PLN02540 115 LDLVKHIRSKYGDYFGITVAGYPEAHPDVIGGDGLATPEAYQKDLAYLKEKVDAGADLIITQLFYDT-DIFLKFVNDCRQ 193 (565)
T ss_pred HHHHHHHHHhCCCCceEEEeCCCCCCCcccccccccCCCChHHHHHHHHHHHHcCCCEEeeccccCH-HHHHHHHHHHHh
Confidence 3444555554 5567888887632 23444433 234566777766643 111478888999
Q ss_pred CC--CeEEE
Q 037019 62 KS--IIVNV 68 (175)
Q Consensus 62 ~g--i~vi~ 68 (175)
.| +.+++
T Consensus 194 ~Gi~vPIip 202 (565)
T PLN02540 194 IGITCPIVP 202 (565)
T ss_pred cCCCCCEEe
Confidence 88 44444
No 260
>PF00875 DNA_photolyase: DNA photolyase from Prosite.; InterPro: IPR006050 DNA photolyases are enzymes that bind to DNA containing pyrimidine dimers: on absorption of visible light, they catalyse dimer splitting into the constituent monomers, a process called photoreactivation []. This is a DNA repair mechanism, repairing mismatched pyrimidine dimers induced by exposure to ultra-violet light []. The precise mechanisms involved in substrate binding, conversion of light energy to the mechanical energy needed to rupture the cyclobutane ring, and subsequent release of the product are uncertain []. Analysis of DNA lyases has revealed the presence of an intrinsic chromophore, all monomers containing a reduced FAD moiety, and, in addition, either a reduced pterin or 8-hydroxy-5-diazaflavin as a second chromophore [, ]. Either chromophore may act as the primary photon acceptor, peak absorptions occurring in the blue region of the spectrum and in the UV-B region, at a wavelength around 290nm []. This domain binds a light harvesting cofactor.; GO: 0003913 DNA photolyase activity, 0006281 DNA repair; PDB: 3UMV_A 2J07_A 1IQU_A 2J09_A 2J08_A 1IQR_A 1DNP_A 3FY4_B 2VTB_A 2J4D_B ....
Probab=20.27 E-value=3.1e+02 Score=19.39 Aligned_cols=60 Identities=17% Similarity=0.189 Sum_probs=37.1
Q ss_pred HcCCccEEEecCCCHHHHHHHHHhCCCCceEeccccCccccc--HHHHHHHHhCCCeEEEecC
Q 037019 11 RLGLTKFIGVSNFSSKKIEALLAFSTIPPSVNQVEMNPAWQQ--RQLREFCKSKSIIVNVFSP 71 (175)
Q Consensus 11 ~~GkIr~iGvS~~~~~~i~~~~~~~~~~~~~~q~~~~~~~~~--~~~~~~~~~~gi~vi~~~~ 71 (175)
+.| |.-+=+.+-..+.+..+++..++.-.+..-+|....++ ..+.+.|.++||.+..+..
T Consensus 64 ~~g-~~L~v~~g~~~~~l~~l~~~~~~~~V~~~~~~~~~~~~rd~~v~~~l~~~~i~~~~~~~ 125 (165)
T PF00875_consen 64 KLG-IPLLVLRGDPEEVLPELAKEYGATAVYFNEEYTPYERRRDERVRKALKKHGIKVHTFDD 125 (165)
T ss_dssp HTT-S-EEEEESSHHHHHHHHHHHHTESEEEEE---SHHHHHHHHHHHHHHHHTTSEEEEE--
T ss_pred hcC-cceEEEecchHHHHHHHHHhcCcCeeEeccccCHHHHHHHHHHHHHHHhcceEEEEECC
Confidence 334 44555555678888888877665555555566554443 5699999999999977654
No 261
>PF04567 RNA_pol_Rpb2_5: RNA polymerase Rpb2, domain 5; InterPro: IPR007647 RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial and chloroplast polymerases). Domain 5, is also known as the external 2 domain [].; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3S17_B 1I6H_B 4A3B_B 3K1F_B 4A3I_B 1TWA_B 3S14_B 3S15_B 2NVX_B 3M3Y_B ....
Probab=20.11 E-value=89 Score=17.73 Aligned_cols=16 Identities=13% Similarity=0.347 Sum_probs=12.9
Q ss_pred HHHHHcCCccEEEecC
Q 037019 7 EVCQRLGLTKFIGVSN 22 (175)
Q Consensus 7 ~~l~~~GkIr~iGvS~ 22 (175)
..|.++|.|-+||.--
T Consensus 2 ~~ll~~G~vE~id~eE 17 (48)
T PF04567_consen 2 DDLLKEGVVEYIDAEE 17 (48)
T ss_dssp HHHHHTTSEEEEETTT
T ss_pred hhHhhCCCEEEecchh
Confidence 5788999999998654
No 262
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=20.05 E-value=1.2e+02 Score=20.05 Aligned_cols=21 Identities=19% Similarity=0.501 Sum_probs=17.9
Q ss_pred HHHHHHHHHHcCCccEEEecC
Q 037019 2 LWEAMEVCQRLGLTKFIGVSN 22 (175)
Q Consensus 2 ~~~~l~~l~~~GkIr~iGvS~ 22 (175)
++..|+.|.++|.|+.+-..+
T Consensus 38 VYR~L~~L~~~Gli~~~~~~~ 58 (116)
T cd07153 38 VYRTLELLEEAGLVREIELGD 58 (116)
T ss_pred HHHHHHHHHhCCCEEEEEeCC
Confidence 568899999999999987765
Done!