BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037020
(312 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3VTE|A Chain A, Crystal Structure Of Tetrahydrocannabinolic Acid Synthase
From Cannabis Sativa
Length = 518
Score = 269 bits (688), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 144/329 (43%), Positives = 195/329 (59%), Gaps = 27/329 (8%)
Query: 1 RFLNRESMGEDLFWAXXXXXXXXXXXXXSWKIELVDVPSTVTVFAIPRTLE-QNATKLLH 59
+ L+R+SMGEDLFWA +WKI+LV VPS T+F++ + +E KL +
Sbjct: 188 KVLDRKSMGEDLFWAIRGGGGENFGIIAAWKIKLVAVPSKSTIFSVKKNMEIHGLVKLFN 247
Query: 60 KWQYIADRVHEDLFISPFLYRAN---------STMVCLFTSLFLGGVDRLLPLMQESFPE 110
KWQ IA + +DL + N +T+ F+S+F GGVD L+ LM +SFPE
Sbjct: 248 KWQNIAYKYDKDLVLMTHFITKNITDNHGKNKTTVHGYFSSIFHGGVDSLVDLMNKSFPE 307
Query: 111 LGLTQEDCREMSFIESVVYING---FEIREFIKRF-----------FKGKADYVIEPIPK 156
LG+ + DC+E S+I++ ++ +G F F K F K DYV +PIP+
Sbjct: 308 LGIKKTDCKEFSWIDTTIFYSGVVNFNTANFKKEILLDRSAGKKTAFSIKLDYVKKPIPE 367
Query: 157 EAFEGLYDLFYEEDPRTYGLLVFFPYGGKMSEISESEIPFPHRAGNRYTLLYYAEWQDAT 216
A + + YEED G+ V +PYGG M EISES IPFPHRAG Y L Y A W+
Sbjct: 368 TAMVKILEKLYEEDVGA-GMYVLYPYGGIMEEISESAIPFPHRAGIMYELWYTASWEK-- 424
Query: 217 NEASQRHKNMLNKLFNYMNPYVTKNPRTAYINYRDLDIGTNNKLGDTSVQEASVWGKKYF 276
E +++H N + ++N+ PYV++NPR AY+NYRDLD+G N + +A +WG+KYF
Sbjct: 425 QEDNEKHINWVRSVYNFTTPYVSQNPRLAYLNYRDLDLGKTNHASPNNYTQARIWGEKYF 484
Query: 277 KNNFYRLVHVKTMVDPENFFRNEQSIPPF 305
NF RLV VKT VDP NFFRNEQSIPP
Sbjct: 485 GKNFNRLVKVKTKVDPNNFFRNEQSIPPL 513
>pdb|4DNS|A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60
Provides Insight Into The Various Cross-Allergenicity Of
The Pollen Group 4 Allergens
pdb|4DNS|B Chain B, Crystal Structure Of Bermuda Grass Isoallergen Bg60
Provides Insight Into The Various Cross-Allergenicity Of
The Pollen Group 4 Allergens
Length = 497
Score = 235 bits (599), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 124/317 (39%), Positives = 183/317 (57%), Gaps = 23/317 (7%)
Query: 1 RFLNRESMGEDLFWAXXXXXXXXXXXXXSWKIELVDVPSTVTVFAIPRTLEQNATKLLHK 60
R L+R++MGED FWA SW+++L+ VP VTVF + + +++ A L+ K
Sbjct: 191 RLLDRKAMGEDHFWAIRGGGGESFGIVASWQVKLLPVPPKVTVFQVHKGIKEGAIDLVTK 250
Query: 61 WQYIADRVHEDLFISPFLYRANSTMVCLFTSLFLGGVDRLLPLMQESFPELGLTQEDCRE 120
WQ +A + +DL I + +F +L+LG L+ LM FPELG+ C+E
Sbjct: 251 WQTVAPALPDDLMIRIMAMGQGA----MFEALYLGTCKDLVLLMTARFPELGMNATHCKE 306
Query: 121 MSFIESVVYI---NGFEIREF------IKRFFKGKADYVIEPIPKEAFEGLYDLFYEEDP 171
M++IESV YI +R+ IK F K K+DYV+EPIPK +E ++ +
Sbjct: 307 MTWIESVPYIPMGPKGTVRDLLNRTSNIKAFGKYKSDYVLEPIPKSDWEKIFTWLVKPG- 365
Query: 172 RTYGLLVFFPYGGKMSEISESEIPFPHRAGNRYTLLYYAEW--QDATNEASQRHKNMLNK 229
G+++ PYGG ++ + ES PFP R+G + + Y W + A +Q ++
Sbjct: 366 --AGVMIMDPYGGGIASVPESATPFPRRSGVLFNIQYVVYWFGEGAAALPTQWTRD---- 419
Query: 230 LFNYMNPYVTKNPRTAYINYRDLDIGTNNKLGDTSV-QEASVWGKKYFKNNFYRLVHVKT 288
++++M PYV+KNPR AY+NYRDLD+G N +G+ S VWG+KYFK NF RL K
Sbjct: 420 IYDFMTPYVSKNPRQAYVNYRDLDLGVNQVVGNVSTYASGKVWGEKYFKGNFERLARTKG 479
Query: 289 MVDPENFFRNEQSIPPF 305
+DPE++FRNEQSIPP
Sbjct: 480 KIDPEDYFRNEQSIPPL 496
>pdb|3TSH|A Chain A, Crystal Structure Of Phl P 4, A Grass Pollen Allergen With
Glucose Dehydrogenase Activity
pdb|3TSJ|A Chain A, Crystal Structure Of Phl P 4, A Grass Pollen Allergen With
Glucose Dehydrogenase Activity
pdb|3TSJ|B Chain B, Crystal Structure Of Phl P 4, A Grass Pollen Allergen With
Glucose Dehydrogenase Activity
Length = 500
Score = 220 bits (561), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 116/316 (36%), Positives = 173/316 (54%), Gaps = 19/316 (6%)
Query: 1 RFLNRESMGEDLFWAXXXXXXXXXXXXXSWKIELVDVPSTVTVFAIPRTLEQNATKLLHK 60
+ +++SMG+D FWA +W+++L+ VP TVT+F I +T+ + A +++K
Sbjct: 189 KLHDKKSMGDDHFWAVRGGGGESFGIVVAWQVKLLPVPPTVTIFKISKTVSEGAVDIINK 248
Query: 61 WQYIADRVHEDLFISPFLYRANSTMVCLFTSLFLGGVDRLLPLMQESFPELGLTQEDCRE 120
WQ +A ++ DL I +T F +++LG L PLM FPELG+ C E
Sbjct: 249 WQVVAPQLPADLMIRIIAQGPKAT----FEAMYLGTCKTLTPLMSSKFPELGMNPSHCNE 304
Query: 121 MSFIESVVYI----------NGFEIREFIKRFFKGKADYVIEPIPKEAFEGLYDLFYEED 170
MS+I+S+ ++ + + K F + K+DYV +P PK +E + + + +
Sbjct: 305 MSWIQSIPFVHLGHRDALEDDLLNRQNSFKPFAEYKSDYVYQPFPKTVWEQILNTWLVKP 364
Query: 171 PRTYGLLVFFPYGGKMSEISESEIPFPHRAGNRYTLLYYAEWQDATNEASQRHKNMLNKL 230
G+++F PYG +S ES PFPHR G + + Y W A+ + +
Sbjct: 365 --GAGIMIFDPYGATISATPESATPFPHRKGVLFNIQYVNYWFAPGAAAAPL--SWSKDI 420
Query: 231 FNYMNPYVTKNPRTAYINYRDLDIGTNNKLGDTSV-QEASVWGKKYFKNNFYRLVHVKTM 289
+NYM PYV+KNPR AY NYRD+D+G N + D S VWG+KYFK NF RL K
Sbjct: 421 YNYMEPYVSKNPRQAYANYRDIDLGRNEVVNDVSTYASGKVWGQKYFKGNFERLAITKGK 480
Query: 290 VDPENFFRNEQSIPPF 305
VDP ++FRNEQSIPP
Sbjct: 481 VDPTDYFRNEQSIPPL 496
>pdb|3FW8|A Chain A, Structure Of Berberine Bridge Enzyme, C166a Variant
Length = 495
Score = 207 bits (528), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 117/318 (36%), Positives = 174/318 (54%), Gaps = 18/318 (5%)
Query: 2 FLNRESMGEDLFWAXXXXXXXXXXXXXSWKIELVDVPSTVTVFAIPRTLE-QNATKLLHK 60
L+R++MGED+FWA +WKI+L+ VP VTVF + + + AT LLHK
Sbjct: 181 ILDRQAMGEDVFWAIRGGGGGVWGAIYAWKIKLLPVPEKVTVFRVTKNVAIDEATSLLHK 240
Query: 61 WQYIADRVHEDLFISPFLYRANSTMVCLFTSLFLGGVDRLL-PLMQESFPELGLTQEDCR 119
WQ++A+ + ED +S L A+ V L F G+ + FPELGL +ED
Sbjct: 241 WQFVAEELEEDFTLS-VLGGADEKQVWLTMLGFHFGLKTVAKSTFDLLFPELGLVEEDYL 299
Query: 120 EMSFIESVVYINGFEI--------REFIKRFFKGKADYVIEPIPKEAFEGLYDLFYEEDP 171
EMS+ ES Y+ G E +F +R FK K D EP+P +AF GL + +E
Sbjct: 300 EMSWGESFAYLAGLETVSQLNNRFLKFDERAFKTKVDLTKEPLPSKAFYGLLERLSKE-- 357
Query: 172 RTYGLLVFFPYGGKMSEISESEIPFPHRAGNRYTLLYYAEWQDATNEASQRHKNMLNKLF 231
G + +GG+MS+IS PFPHR+G R + Y W + + + L K++
Sbjct: 358 -PNGFIALNGFGGQMSKISSDFTPFPHRSGTRLMVEYIVAWNQSEQKKKTEFLDWLEKVY 416
Query: 232 NYMNPYVTKNPRTAYINYRDLDIG----TNNKLGDTSVQEASVWGKKYFKNNFYRLVHVK 287
+M P+V+KNPR Y+N+ DLD+G N + + +++ + WG+ YF +N+ RL+ K
Sbjct: 417 EFMKPFVSKNPRLGYVNHIDLDLGGIDWGNKTVVNNAIEISRSWGESYFLSNYERLIRAK 476
Query: 288 TMVDPENFFRNEQSIPPF 305
T++DP N F + QSIPP
Sbjct: 477 TLIDPNNVFNHPQSIPPM 494
>pdb|3D2D|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With
(S)-Reticuline
pdb|3D2H|A Chain A, Structure Of Berberine Bridge Enzyme From Eschscholzia
Californica, Monoclinic Crystal Form
pdb|3D2J|A Chain A, Structure Of Berberine Bridge Enzyme From Eschscholzia
Californica, Tetragonal Crystal Form
Length = 538
Score = 207 bits (528), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 118/318 (37%), Positives = 175/318 (55%), Gaps = 18/318 (5%)
Query: 2 FLNRESMGEDLFWAXXXXXXXXXXXXXSWKIELVDVPSTVTVFAIPRTLE-QNATKLLHK 60
L+R++MGED+FWA +WKI+L+ VP VTVF + + + AT LLHK
Sbjct: 206 ILDRQAMGEDVFWAIRGGGGGVWGAIYAWKIKLLPVPEKVTVFRVTKNVAIDEATSLLHK 265
Query: 61 WQYIADRVHEDLFISPFLYRANSTMVCLFTSLFLGGVDRLL-PLMQESFPELGLTQEDCR 119
WQ++A+ + ED +S L A+ V L F G+ + FPELGL +ED
Sbjct: 266 WQFVAEELEEDFTLS-VLGGADEKQVWLTMLGFHFGLKTVAKSTFDLLFPELGLVEEDYL 324
Query: 120 EMSFIESVVYINGFEI--------REFIKRFFKGKADYVIEPIPKEAFEGLYDLFYEEDP 171
EMS+ ES Y+ G E +F +R FK K D EP+P +AF GL + +E P
Sbjct: 325 EMSWGESFAYLAGLETVSQLNNRFLKFDERAFKTKVDLTKEPLPSKAFYGLLERLSKE-P 383
Query: 172 RTYGLLVFFPYGGKMSEISESEIPFPHRAGNRYTLLYYAEWQDATNEASQRHKNMLNKLF 231
G + +GG+MS+IS PFPHR+G R + Y W + + + L K++
Sbjct: 384 N--GFIALNGFGGQMSKISSDFTPFPHRSGTRLMVEYIVAWNQSEQKKKTEFLDWLEKVY 441
Query: 232 NYMNPYVTKNPRTAYINYRDLDIG----TNNKLGDTSVQEASVWGKKYFKNNFYRLVHVK 287
+M P+V+KNPR Y+N+ DLD+G N + + +++ + WG+ YF +N+ RL+ K
Sbjct: 442 EFMKPFVSKNPRLGYVNHIDLDLGGIDWGNKTVVNNAIEISRSWGESYFLSNYERLIRAK 501
Query: 288 TMVDPENFFRNEQSIPPF 305
T++DP N F + QSIPP
Sbjct: 502 TLIDPNNVFNHPQSIPPM 519
>pdb|3FW9|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With
(S)-Scoulerine
Length = 495
Score = 207 bits (528), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 117/318 (36%), Positives = 174/318 (54%), Gaps = 18/318 (5%)
Query: 2 FLNRESMGEDLFWAXXXXXXXXXXXXXSWKIELVDVPSTVTVFAIPRTLE-QNATKLLHK 60
L+R++MGED+FWA +WKI+L+ VP VTVF + + + AT LLHK
Sbjct: 181 ILDRQAMGEDVFWAIRGGGGGVWGAIYAWKIKLLPVPEKVTVFRVTKNVAIDEATSLLHK 240
Query: 61 WQYIADRVHEDLFISPFLYRANSTMVCLFTSLFLGGVDRLL-PLMQESFPELGLTQEDCR 119
WQ++A+ + ED +S L A+ V L F G+ + FPELGL +ED
Sbjct: 241 WQFVAEELEEDFTLS-VLGGADEKQVWLTMLGFHFGLKTVAKSTFDLLFPELGLVEEDYL 299
Query: 120 EMSFIESVVYINGFEI--------REFIKRFFKGKADYVIEPIPKEAFEGLYDLFYEEDP 171
EMS+ ES Y+ G E +F +R FK K D EP+P +AF GL + +E
Sbjct: 300 EMSWGESFAYLAGLETVSQLNNRFLKFDERAFKTKVDLTKEPLPSKAFYGLLERLSKE-- 357
Query: 172 RTYGLLVFFPYGGKMSEISESEIPFPHRAGNRYTLLYYAEWQDATNEASQRHKNMLNKLF 231
G + +GG+MS+IS PFPHR+G R + Y W + + + L K++
Sbjct: 358 -PNGFIALNGFGGQMSKISSDFTPFPHRSGTRLMVEYIVAWNQSEQKKKTEFLDWLEKVY 416
Query: 232 NYMNPYVTKNPRTAYINYRDLDIG----TNNKLGDTSVQEASVWGKKYFKNNFYRLVHVK 287
+M P+V+KNPR Y+N+ DLD+G N + + +++ + WG+ YF +N+ RL+ K
Sbjct: 417 EFMKPFVSKNPRLGYVNHIDLDLGGIDWGNKTVVNNAIEISRSWGESYFLSNYERLIRAK 476
Query: 288 TMVDPENFFRNEQSIPPF 305
T++DP N F + QSIPP
Sbjct: 477 TLIDPNNVFNHPQSIPPM 494
>pdb|4EC3|A Chain A, Structure Of Berberine Bridge Enzyme, H174a Variant In
Complex With (S)-Reticuline
Length = 519
Score = 207 bits (527), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 118/318 (37%), Positives = 175/318 (55%), Gaps = 18/318 (5%)
Query: 2 FLNRESMGEDLFWAXXXXXXXXXXXXXSWKIELVDVPSTVTVFAIPRTLE-QNATKLLHK 60
L+R++MGED+FWA +WKI+L+ VP VTVF + + + AT LLHK
Sbjct: 187 ILDRQAMGEDVFWAIRGGGGGVWGAIYAWKIKLLPVPEKVTVFRVTKNVAIDEATSLLHK 246
Query: 61 WQYIADRVHEDLFISPFLYRANSTMVCLFTSLFLGGVDRLL-PLMQESFPELGLTQEDCR 119
WQ++A+ + ED +S L A+ V L F G+ + FPELGL +ED
Sbjct: 247 WQFVAEELEEDFTLS-VLGGADEKQVWLTMLGFHFGLKTVAKSTFDLLFPELGLVEEDYL 305
Query: 120 EMSFIESVVYINGFEI--------REFIKRFFKGKADYVIEPIPKEAFEGLYDLFYEEDP 171
EMS+ ES Y+ G E +F +R FK K D EP+P +AF GL + +E P
Sbjct: 306 EMSWGESFAYLAGLETVSQLNNRFLKFDERAFKTKVDLTKEPLPSKAFYGLLERLSKE-P 364
Query: 172 RTYGLLVFFPYGGKMSEISESEIPFPHRAGNRYTLLYYAEWQDATNEASQRHKNMLNKLF 231
G + +GG+MS+IS PFPHR+G R + Y W + + + L K++
Sbjct: 365 N--GFIALNGFGGQMSKISSDFTPFPHRSGTRLMVEYIVAWNQSEQKKKTEFLDWLEKVY 422
Query: 232 NYMNPYVTKNPRTAYINYRDLDIG----TNNKLGDTSVQEASVWGKKYFKNNFYRLVHVK 287
+M P+V+KNPR Y+N+ DLD+G N + + +++ + WG+ YF +N+ RL+ K
Sbjct: 423 EFMKPFVSKNPRLGYVNHIDLDLGGIDWGNKTVVNNAIEISRSWGESYFLSNYERLIRAK 482
Query: 288 TMVDPENFFRNEQSIPPF 305
T++DP N F + QSIPP
Sbjct: 483 TLIDPNNVFNHPQSIPPM 500
>pdb|3GSY|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With
Dehydroscoulerine
Length = 519
Score = 207 bits (527), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 118/318 (37%), Positives = 175/318 (55%), Gaps = 18/318 (5%)
Query: 2 FLNRESMGEDLFWAXXXXXXXXXXXXXSWKIELVDVPSTVTVFAIPRTLE-QNATKLLHK 60
L+R++MGED+FWA +WKI+L+ VP VTVF + + + AT LLHK
Sbjct: 187 ILDRQAMGEDVFWAIRGGGGGVWGAIYAWKIKLLPVPEKVTVFRVTKNVAIDEATSLLHK 246
Query: 61 WQYIADRVHEDLFISPFLYRANSTMVCLFTSLFLGGVDRLL-PLMQESFPELGLTQEDCR 119
WQ++A+ + ED +S L A+ V L F G+ + FPELGL +ED
Sbjct: 247 WQFVAEELEEDFTLS-VLGGADEKQVWLTMLGFHFGLKTVAKSTFDLLFPELGLVEEDYL 305
Query: 120 EMSFIESVVYINGFEI--------REFIKRFFKGKADYVIEPIPKEAFEGLYDLFYEEDP 171
EMS+ ES Y+ G E +F +R FK K D EP+P +AF GL + +E P
Sbjct: 306 EMSWGESFAYLAGLETVSQLNNRFLKFDERAFKTKVDLTKEPLPSKAFYGLLERLSKE-P 364
Query: 172 RTYGLLVFFPYGGKMSEISESEIPFPHRAGNRYTLLYYAEWQDATNEASQRHKNMLNKLF 231
G + +GG+MS+IS PFPHR+G R + Y W + + + L K++
Sbjct: 365 N--GFIALNGFGGQMSKISSDFTPFPHRSGTRLMVEYIVAWNQSEQKKKTEFLDWLEKVY 422
Query: 232 NYMNPYVTKNPRTAYINYRDLDIG----TNNKLGDTSVQEASVWGKKYFKNNFYRLVHVK 287
+M P+V+KNPR Y+N+ DLD+G N + + +++ + WG+ YF +N+ RL+ K
Sbjct: 423 EFMKPFVSKNPRLGYVNHIDLDLGGIDWGNKTVVNNAIEISRSWGESYFLSNYERLIRAK 482
Query: 288 TMVDPENFFRNEQSIPPF 305
T++DP N F + QSIPP
Sbjct: 483 TLIDPNNVFNHPQSIPPM 500
>pdb|3FWA|A Chain A, Structure Of Berberine Bridge Enzyme, C166a Variant In
Complex With (S)-Reticuline
Length = 497
Score = 207 bits (527), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 117/318 (36%), Positives = 174/318 (54%), Gaps = 18/318 (5%)
Query: 2 FLNRESMGEDLFWAXXXXXXXXXXXXXSWKIELVDVPSTVTVFAIPRTLE-QNATKLLHK 60
L+R++MGED+FWA +WKI+L+ VP VTVF + + + AT LLHK
Sbjct: 181 ILDRQAMGEDVFWAIRGGGGGVWGAIYAWKIKLLPVPEKVTVFRVTKNVAIDEATSLLHK 240
Query: 61 WQYIADRVHEDLFISPFLYRANSTMVCLFTSLFLGGVDRLL-PLMQESFPELGLTQEDCR 119
WQ++A+ + ED +S L A+ V L F G+ + FPELGL +ED
Sbjct: 241 WQFVAEELEEDFTLS-VLGGADEKQVWLTMLGFHFGLKTVAKSTFDLLFPELGLVEEDYL 299
Query: 120 EMSFIESVVYINGFEI--------REFIKRFFKGKADYVIEPIPKEAFEGLYDLFYEEDP 171
EMS+ ES Y+ G E +F +R FK K D EP+P +AF GL + +E
Sbjct: 300 EMSWGESFAYLAGLETVSQLNNRFLKFDERAFKTKVDLTKEPLPSKAFYGLLERLSKE-- 357
Query: 172 RTYGLLVFFPYGGKMSEISESEIPFPHRAGNRYTLLYYAEWQDATNEASQRHKNMLNKLF 231
G + +GG+MS+IS PFPHR+G R + Y W + + + L K++
Sbjct: 358 -PNGFIALNGFGGQMSKISSDFTPFPHRSGTRLMVEYIVAWNQSEQKKKTEFLDWLEKVY 416
Query: 232 NYMNPYVTKNPRTAYINYRDLDIG----TNNKLGDTSVQEASVWGKKYFKNNFYRLVHVK 287
+M P+V+KNPR Y+N+ DLD+G N + + +++ + WG+ YF +N+ RL+ K
Sbjct: 417 EFMKPFVSKNPRLGYVNHIDLDLGGIDWGNKTVVNNAIEISRSWGESYFLSNYERLIRAK 476
Query: 288 TMVDPENFFRNEQSIPPF 305
T++DP N F + QSIPP
Sbjct: 477 TLIDPNNVFNHPQSIPPM 494
>pdb|3FW7|A Chain A, Structure Of Berberine Bridge Enzyme, H104a Variant
Length = 498
Score = 207 bits (527), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 117/318 (36%), Positives = 174/318 (54%), Gaps = 18/318 (5%)
Query: 2 FLNRESMGEDLFWAXXXXXXXXXXXXXSWKIELVDVPSTVTVFAIPRTLE-QNATKLLHK 60
L+R++MGED+FWA +WKI+L+ VP VTVF + + + AT LLHK
Sbjct: 184 ILDRQAMGEDVFWAIRGGGGGVWGAIYAWKIKLLPVPEKVTVFRVTKNVAIDEATSLLHK 243
Query: 61 WQYIADRVHEDLFISPFLYRANSTMVCLFTSLFLGGVDRLL-PLMQESFPELGLTQEDCR 119
WQ++A+ + ED +S L A+ V L F G+ + FPELGL +ED
Sbjct: 244 WQFVAEELEEDFTLS-VLGGADEKQVWLTMLGFHFGLKTVAKSTFDLLFPELGLVEEDYL 302
Query: 120 EMSFIESVVYINGFEI--------REFIKRFFKGKADYVIEPIPKEAFEGLYDLFYEEDP 171
EMS+ ES Y+ G E +F +R FK K D EP+P +AF GL + +E
Sbjct: 303 EMSWGESFAYLAGLETVSQLNNRFLKFDERAFKTKVDLTKEPLPSKAFYGLLERLSKE-- 360
Query: 172 RTYGLLVFFPYGGKMSEISESEIPFPHRAGNRYTLLYYAEWQDATNEASQRHKNMLNKLF 231
G + +GG+MS+IS PFPHR+G R + Y W + + + L K++
Sbjct: 361 -PNGFIALNGFGGQMSKISSDFTPFPHRSGTRLMVEYIVAWNQSEQKKKTEFLDWLEKVY 419
Query: 232 NYMNPYVTKNPRTAYINYRDLDIG----TNNKLGDTSVQEASVWGKKYFKNNFYRLVHVK 287
+M P+V+KNPR Y+N+ DLD+G N + + +++ + WG+ YF +N+ RL+ K
Sbjct: 420 EFMKPFVSKNPRLGYVNHIDLDLGGIDWGNKTVVNNAIEISRSWGESYFLSNYERLIRAK 479
Query: 288 TMVDPENFFRNEQSIPPF 305
T++DP N F + QSIPP
Sbjct: 480 TLIDPNNVFNHPQSIPPM 497
>pdb|2WDW|A Chain A, The Native Crystal Structure Of The Primary Hexose Oxidase
( Dbv29) In Antibiotic A40926 Biosynthesis
pdb|2WDW|B Chain B, The Native Crystal Structure Of The Primary Hexose Oxidase
( Dbv29) In Antibiotic A40926 Biosynthesis
pdb|2WDX|A Chain A, The Complexed Crystal Structure Of The Primary Hexose
Oxidase (Dbv29) In Antibiotic A40926 Biosynthesis
pdb|2WDX|B Chain B, The Complexed Crystal Structure Of The Primary Hexose
Oxidase (Dbv29) In Antibiotic A40926 Biosynthesis
pdb|2WDX|C Chain C, The Complexed Crystal Structure Of The Primary Hexose
Oxidase (Dbv29) In Antibiotic A40926 Biosynthesis
pdb|2WDX|D Chain D, The Complexed Crystal Structure Of The Primary Hexose
Oxidase (Dbv29) In Antibiotic A40926 Biosynthesis
Length = 523
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 66/251 (26%), Positives = 104/251 (41%), Gaps = 40/251 (15%)
Query: 82 NSTMVCLFTSLFLGGVDRLLPLMQES---FP-ELGLTQEDCREM--SFIESVV-YINGFE 134
+S L++ L +G +P M ES P ++ T+ D R + + IE+V+ + E
Sbjct: 285 DSPYTGLWSQLMIG---NEVPGMGESGFMMPIQVDATRPDARRLLDAHIEAVIDGVPPAE 341
Query: 135 IREFIKRFF--------------KGKADYVIEPIPKEAFEGLYDLFYEEDPRTYGLLVFF 180
+ E I++ + K KA Y+ + + + +Y+ D YG +
Sbjct: 342 VPEPIEQRWLASTPGRGGRGPASKTKAGYLRKRLTDRQIQAVYENMTHMDGIDYGAVWLI 401
Query: 181 PYGGKMSEISESEIPFPHRAGNRYTLLYYAEWQDATNEASQRHKNMLNKLFNYMNPYVTK 240
YGGK++ + + P R + Y W + NEA +H + KL+ +
Sbjct: 402 GYGGKVNTVDPAATALPQRDA-ILKVNYITGWANPGNEA--KHLTWVRKLYADVYAETGG 458
Query: 241 NP------RTAYINYRDLDIGTNNKLGDTSVQEASV-WGKKYFKNNFYRLVHVKTMVDPE 293
P AYINY D D L D + + V W Y+K N RL VK DP
Sbjct: 459 VPVPNDVSDGAYINYPDSD------LADPGLNTSGVPWHDLYYKGNHPRLRKVKAAYDPR 512
Query: 294 NFFRNEQSIPP 304
N F + SI P
Sbjct: 513 NHFHHALSIRP 523
>pdb|3POP|A Chain A, The Crystal Structure Of Gilr, An Oxidoreductase That
Catalyzes The Terminal Step Of Gilvocarcin Biosynthesis
pdb|3POP|B Chain B, The Crystal Structure Of Gilr, An Oxidoreductase That
Catalyzes The Terminal Step Of Gilvocarcin Biosynthesis
pdb|3POP|C Chain C, The Crystal Structure Of Gilr, An Oxidoreductase That
Catalyzes The Terminal Step Of Gilvocarcin Biosynthesis
pdb|3POP|D Chain D, The Crystal Structure Of Gilr, An Oxidoreductase That
Catalyzes The Terminal Step Of Gilvocarcin Biosynthesis
pdb|3PQB|A Chain A, The Crystal Structure Of Pregilvocarcin In Complex With
Gilr, An Oxidoreductase That Catalyzes The Terminal Step
Of Gilvocarcin Biosynthesis
pdb|3PQB|B Chain B, The Crystal Structure Of Pregilvocarcin In Complex With
Gilr, An Oxidoreductase That Catalyzes The Terminal Step
Of Gilvocarcin Biosynthesis
pdb|3PQB|C Chain C, The Crystal Structure Of Pregilvocarcin In Complex With
Gilr, An Oxidoreductase That Catalyzes The Terminal Step
Of Gilvocarcin Biosynthesis
pdb|3PQB|D Chain D, The Crystal Structure Of Pregilvocarcin In Complex With
Gilr, An Oxidoreductase That Catalyzes The Terminal Step
Of Gilvocarcin Biosynthesis
Length = 501
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 74/188 (39%), Gaps = 14/188 (7%)
Query: 121 MSFIESVVYINGFEIREFIKRFFKGKADYVIEPIPKEAFEGLYDLFYEEDPRTYGLLVFF 180
MS++ Y++ + + + K+ Y E L+ + + P ++F
Sbjct: 320 MSWLTGTRYMSQADCGDVMGARSASKSAYHRAAPTDEQLSVLHRHLHADHPGQASYVMFN 379
Query: 181 PYGGKMSEISESEIPFPHRAGNRYTLLYYAEWQDATNEASQRHKNMLNKL----FNYMNP 236
YGG+++ S+ P R + +++ WQDA E + H L L F
Sbjct: 380 SYGGEINRRGPSDAAVPQR-DSVVKSSWFSAWQDA--ELDELHLGWLRGLYEEFFAGTGG 436
Query: 237 YVTKNPRT--AYINYRDLDIGTNNKLGDTSVQEASVWGKKYFKNNFYRLVHVKTMVDPEN 294
RT YINY D D+ L + W Y+K+N+ RL K DP N
Sbjct: 437 VPVTGGRTDGCYINYPDADL-----LDPARNRSGEPWHHLYYKDNYARLRSAKRAWDPLN 491
Query: 295 FFRNEQSI 302
F + SI
Sbjct: 492 TFHHSMSI 499
>pdb|2Y08|A Chain A, Structure Of The Substrate-Free Fad-Dependent Tirandamycin
Oxidase Taml
pdb|2Y08|B Chain B, Structure Of The Substrate-Free Fad-Dependent Tirandamycin
Oxidase Taml
pdb|2Y3R|A Chain A, Structure Of The Tirandamycin-Bound Fad-Dependent
Tirandamycin Oxidase Taml In P21 Space Group
pdb|2Y3R|B Chain B, Structure Of The Tirandamycin-Bound Fad-Dependent
Tirandamycin Oxidase Taml In P21 Space Group
pdb|2Y3R|C Chain C, Structure Of The Tirandamycin-Bound Fad-Dependent
Tirandamycin Oxidase Taml In P21 Space Group
pdb|2Y3R|D Chain D, Structure Of The Tirandamycin-Bound Fad-Dependent
Tirandamycin Oxidase Taml In P21 Space Group
pdb|2Y3S|A Chain A, Structure Of The Tirandamycine-Bound Fad-Dependent
Tirandamycin Oxidase Taml In C2 Space Group
pdb|2Y3S|B Chain B, Structure Of The Tirandamycine-Bound Fad-Dependent
Tirandamycin Oxidase Taml In C2 Space Group
pdb|2Y4G|A Chain A, Structure Of The Tirandamycin-Bound Fad-Dependent
Tirandamycin Oxidase Taml In P212121 Space Group
pdb|2Y4G|B Chain B, Structure Of The Tirandamycin-Bound Fad-Dependent
Tirandamycin Oxidase Taml In P212121 Space Group
Length = 530
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 60/248 (24%), Positives = 95/248 (38%), Gaps = 24/248 (9%)
Query: 71 DLFISPFLYRANSTMVCLFTSLFLGGVD---RLLPLMQESFPELGLT-QEDCREMSFIES 126
DL+ L R+ S + + T L G D RL + +G+ D R + ++ S
Sbjct: 292 DLYSVLALTRSQSGALAMTTQLDATGPDAEKRLETYLAAVSEGVGVQPHSDTRRLPWLHS 351
Query: 127 VVYINGFEIREFIKRFFKGKADYVIEPIPKEAFEGLYDLFYEED-PRTYGLLVFFPYGGK 185
+ + R K KA Y LY D G++ YGGK
Sbjct: 352 TRWPGIAGDGDMTGRA-KIKAAYARRSFDDRQIGTLYTRLTSTDYDNPAGVVALIAYGGK 410
Query: 186 MSEISESEIPFPHRAGNRYTLLYYAEWQDATNEASQRHKNMLNKLFN--YMN----PYVT 239
++ + R + ++Y W+D + H + +L+ Y + P
Sbjct: 411 VNAVPADRTAVAQR-DSILKIVYVTTWEDPAQDPV--HVRWIRELYRDVYADTGGVPVPG 467
Query: 240 KNPRTAYINYRDLDIGTNNKLGDTSVQEASV-WGKKYFKNNFYRLVHVKTMVDPENFFRN 298
AY+NY D+D L D + V W + Y+K+ + RL VK DP N FR+
Sbjct: 468 GAADGAYVNYPDVD------LADEEWNTSGVPWSELYYKDAYPRLQAVKARWDPRNVFRH 521
Query: 299 EQS--IPP 304
S +PP
Sbjct: 522 ALSVRVPP 529
>pdb|2IPI|A Chain A, Crystal Structure Of Aclacinomycin Oxidoreductase
pdb|2IPI|B Chain B, Crystal Structure Of Aclacinomycin Oxidoreductase
pdb|2IPI|C Chain C, Crystal Structure Of Aclacinomycin Oxidoreductase
pdb|2IPI|D Chain D, Crystal Structure Of Aclacinomycin Oxidoreductase
Length = 521
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/165 (24%), Positives = 71/165 (43%), Gaps = 11/165 (6%)
Query: 144 KGKADYVIEPIPKEAFEGLYDLFYEEDPRTYGLLVFFPYGGKMSEISESEIPFPHRAGNR 203
K K Y+ +P LY D + +G + + YGGK++ + E+ R +
Sbjct: 362 KSKGAYLRKPWTAAQAATLY-RHLSADSQVWGEVSLYSYGGKVNSVPETATATAQR-DSI 419
Query: 204 YTLLYYAEWQDATNEASQRH--KNMLNKLFNYMNPYVTKNPRT--AYINYRDLDIGTNNK 259
+ A W D ++ + + + ++F + RT +INY D+D+ + +
Sbjct: 420 IKVWMSATWMDPAHDDANLAWIREIYREIFATTGGVPVPDDRTEGTFINYPDVDL-VDER 478
Query: 260 LGDTSVQEASVWGKKYFKNNFYRLVHVKTMVDPENFFRNEQSIPP 304
+ V W Y+K N+ RL VK DP + FR+ S+ P
Sbjct: 479 WNTSGVP----WYTLYYKGNYPRLQKVKARWDPRDVFRHALSVRP 519
>pdb|2BVF|A Chain A, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 3 (P1)
pdb|2BVF|B Chain B, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 3 (P1)
pdb|2BVG|A Chain A, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 1 (P21)
pdb|2BVG|B Chain B, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 1 (P21)
pdb|2BVG|C Chain C, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 1 (P21)
pdb|2BVG|D Chain D, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 1 (P21)
pdb|2BVH|A Chain A, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 2 (P21)
pdb|2BVH|B Chain B, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 2 (P21)
pdb|2BVH|C Chain C, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 2 (P21)
pdb|2BVH|D Chain D, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 2 (P21)
Length = 459
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 63/263 (23%), Positives = 97/263 (36%), Gaps = 47/263 (17%)
Query: 55 TKLLHKWQYIADRVHEDLFISPFLYRANSTMVCLFTSLFLGGVDRLLPLMQESFPELGLT 114
T LL +AD ++ +F+ RA S VC+ LGG+D + LG T
Sbjct: 228 TSLLDALNEMADHIYPSVFVGVDENRAPSVTVCVG---HLGGLD-IAERDIARLRGLGRT 283
Query: 115 QEDCREMSFIESVVYINGFEIREFIKRFFKGKADYVIE---PIP----KEAFEGLYDLFY 167
D + + VV +N + F G ++ I+ +P EA G D F
Sbjct: 284 VSDSIAVRSYDEVVALN-----AEVGSFEDGMSNLWIDREIAMPNARFAEAIAGNLDKFV 338
Query: 168 EEDPRTYGLLVFFPYGGKMSEISESEIPF------PHRAGNRYTLLYYAEWQDATNEASQ 221
E P G ++ +PF P R + +L AEW A S+
Sbjct: 339 SE-----------PASGGSVKLEIEGMPFGNPKRTPARHRDAMGVLALAEWSGAA-PGSE 386
Query: 222 RHKNMLNKLFNYMNPYVTKNPRTAYINYRDLDIGTNNKLGDTSVQEASVWGKKYFKNNFY 281
++ + +L + A + + NN S A + + Y +
Sbjct: 387 KYPELARELDAAL--------LRAGVTTSGFGLLNNN-----SEVTAEMVAEVYKPEVYS 433
Query: 282 RLVHVKTMVDPENFFRNEQSIPP 304
RL VK DPEN FR+ +I P
Sbjct: 434 RLAAVKREYDPENRFRHNYNIDP 456
>pdb|3HTZ|A Chain A, Crystal Structure Of The Catalytic Fragment Of Alanyl-Trna
Synthetase In Complex With L-Serine: Re-Refined
Length = 464
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 25/87 (28%)
Query: 75 SPFLYRANSTMVCLFTSLFLGGVDRLLPLMQESFPELGLTQEDCREMSFIESVVYINGFE 134
+PFLY+ GVD ++ +M+E +PEL L++E F++ +V G E
Sbjct: 313 NPFLYK---------------GVDLVVDIMKEPYPELELSRE------FVKGIV--KGEE 349
Query: 135 IREFIKRFFKGKADYVIEPIPKEAFEG 161
R FIK K +Y+ E I K EG
Sbjct: 350 KR-FIKT-LKAGMEYIQEVIQKALEEG 374
>pdb|1YFR|A Chain A, Crystal Structure Of Alanyl-Trna Synthetase In Complex
With Atp And Magnesium
pdb|1YFR|B Chain B, Crystal Structure Of Alanyl-Trna Synthetase In Complex
With Atp And Magnesium
pdb|1YFS|A Chain A, The Crystal Structure Of Alanyl-Trna Synthetase In Complex
With L-Alanine
pdb|1YFS|B Chain B, The Crystal Structure Of Alanyl-Trna Synthetase In Complex
With L-Alanine
pdb|1YFT|A Chain A, The Crystal Structure Of The Catalytic Fragment Of Alanyl-
Trna Synthetase In Complex Wtih Glycine
pdb|1YGB|A Chain A, Crystal Structure Of The Catalytic Fragment Of Alanyl-Trna
Synthetase In Complex With L-Serine
Length = 465
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 25/87 (28%)
Query: 75 SPFLYRANSTMVCLFTSLFLGGVDRLLPLMQESFPELGLTQEDCREMSFIESVVYINGFE 134
+PFLY+ GVD ++ +M+E +PEL L++E F++ +V G E
Sbjct: 314 NPFLYK---------------GVDLVVDIMKEPYPELELSRE------FVKGIV--KGEE 350
Query: 135 IREFIKRFFKGKADYVIEPIPKEAFEG 161
R FIK K +Y+ E I K EG
Sbjct: 351 KR-FIKT-LKAGMEYIQEVIQKALEEG 375
>pdb|2YQR|A Chain A, Solution Structure Of The Kh Domain In Kiaa0907 Protein
Length = 119
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Query: 129 YINGFEIREFIKRFFKGKADYVIEPIP-KEAFEGLYDLFYEEDPRTYGL 176
Y+ +I K F +GK IEP +EAFE +Y Y P+ GL
Sbjct: 40 YLQHIQIETGAKVFLRGKGSGCIEPASGREAFEPMY--IYISHPKPEGL 86
>pdb|1O81|A Chain A, Tryparedoxin Ii From C.fasciculata Solved By Sulphur
Phasing
pdb|1O81|B Chain B, Tryparedoxin Ii From C.fasciculata Solved By Sulphur
Phasing
pdb|1OC9|B Chain B, Tryparedoxin Ii From C.Fasciculata Solved By Mr
pdb|1OC8|A Chain A, Tryparedoxin Ii From C.Fasciculata Solved By Mr
pdb|1OC8|B Chain B, Tryparedoxin Ii From C.Fasciculata Solved By Mr
Length = 152
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 19/42 (45%)
Query: 171 PRTYGLLVFFPYGGKMSEISESEIPFPHRAGNRYTLLYYAEW 212
P GL FFPY + + + ++I P AG + A W
Sbjct: 1 PHMSGLKKFFPYSTNVLKGAAADIALPSLAGKTVFFYFSASW 42
>pdb|1OC9|A Chain A, Tryparedoxin Ii From C.Fasciculata Solved By Mr
Length = 152
Score = 28.5 bits (62), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 19/42 (45%)
Query: 171 PRTYGLLVFFPYGGKMSEISESEIPFPHRAGNRYTLLYYAEW 212
P GL FFPY + + + ++I P AG + A W
Sbjct: 1 PHMSGLKKFFPYSTNVLKGAAADIALPSLAGKTVFFYFSASW 42
>pdb|1RIQ|A Chain A, The Crystal Structure Of The Catalytic Fragment Of The
Alanyl-Trna Synthetase
Length = 465
Score = 28.1 bits (61), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 42/87 (48%), Gaps = 25/87 (28%)
Query: 75 SPFLYRANSTMVCLFTSLFLGGVDRLLPLMQESFPELGLTQEDCREMSFIESVVYINGFE 134
+PFLY+ GVD ++ + +E +PEL L++E F++ +V G E
Sbjct: 314 NPFLYK---------------GVDLVVDIXKEPYPELELSRE------FVKGIV--KGEE 350
Query: 135 IREFIKRFFKGKADYVIEPIPKEAFEG 161
R FIK K +Y+ E I K EG
Sbjct: 351 KR-FIKT-LKAGXEYIQEVIQKALEEG 375
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.139 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,434,149
Number of Sequences: 62578
Number of extensions: 396725
Number of successful extensions: 849
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 780
Number of HSP's gapped (non-prelim): 22
length of query: 312
length of database: 14,973,337
effective HSP length: 99
effective length of query: 213
effective length of database: 8,778,115
effective search space: 1869738495
effective search space used: 1869738495
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)