Query 037020
Match_columns 312
No_of_seqs 127 out of 1117
Neff 9.1
Searched_HMMs 46136
Date Fri Mar 29 07:47:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037020.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037020hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02441 cytokinin dehydrogena 99.7 1.1E-14 2.4E-19 138.1 23.0 269 4-308 209-523 (525)
2 PF08031 BBE: Berberine and be 99.6 6.9E-17 1.5E-21 103.0 2.9 47 245-303 1-47 (47)
3 TIGR01679 bact_FAD_ox FAD-link 99.0 1.2E-08 2.6E-13 95.9 15.2 56 5-66 144-199 (419)
4 TIGR01678 FAD_lactone_ox sugar 98.6 1.3E-06 2.8E-11 82.5 15.3 55 5-65 150-204 (438)
5 KOG1231 Proteins containing th 98.5 6.2E-07 1.3E-11 81.8 8.2 34 5-39 207-240 (505)
6 TIGR01677 pln_FAD_oxido plant- 98.3 7.1E-07 1.5E-11 86.3 4.4 35 4-39 179-213 (557)
7 TIGR01676 GLDHase galactonolac 98.2 1E-06 2.2E-11 84.3 4.8 55 5-65 197-251 (541)
8 PRK11282 glcE glycolate oxidas 98.0 4.2E-06 9E-11 76.5 3.7 53 8-65 141-193 (352)
9 COG0277 GlcD FAD/FMN-containin 97.9 0.00011 2.3E-09 70.2 11.2 35 270-304 424-458 (459)
10 PLN02805 D-lactate dehydrogena 97.8 3E-05 6.4E-10 75.3 5.9 33 8-41 279-311 (555)
11 PLN02465 L-galactono-1,4-lacto 97.7 4E-05 8.6E-10 74.1 5.0 55 5-65 232-286 (573)
12 PRK11230 glycolate oxidase sub 97.7 6.4E-05 1.4E-09 72.3 6.2 53 8-64 202-254 (499)
13 TIGR00387 glcD glycolate oxida 97.3 0.0005 1.1E-08 64.7 6.4 34 7-41 144-177 (413)
14 PF09265 Cytokin-bind: Cytokin 96.7 0.0066 1.4E-07 53.5 7.5 128 154-302 148-280 (281)
15 PRK13905 murB UDP-N-acetylenol 94.2 0.022 4.8E-07 51.2 1.4 30 9-38 163-193 (298)
16 PF04030 ALO: D-arabinono-1,4- 92.2 0.39 8.4E-06 42.2 6.1 22 278-299 233-254 (259)
17 PF02913 FAD-oxidase_C: FAD li 88.4 0.64 1.4E-05 39.9 4.2 24 275-298 221-245 (248)
18 KOG1233 Alkyl-dihydroxyacetone 87.8 1.2 2.5E-05 40.9 5.4 54 7-64 310-363 (613)
19 PLN00107 FAD-dependent oxidore 85.1 1.6 3.5E-05 38.0 4.7 23 278-300 176-198 (257)
20 KOG1232 Proteins containing th 83.5 38 0.00082 31.4 13.3 23 18-41 247-269 (511)
21 PRK13903 murB UDP-N-acetylenol 82.9 0.82 1.8E-05 42.2 2.2 31 8-38 165-197 (363)
22 TIGR01677 pln_FAD_oxido plant- 79.7 8.7 0.00019 37.8 8.0 23 278-300 482-504 (557)
23 PLN02805 D-lactate dehydrogena 78.4 5.5 0.00012 39.1 6.3 35 270-304 516-551 (555)
24 PRK11183 D-lactate dehydrogena 74.0 5.3 0.00011 38.8 4.7 52 9-62 237-290 (564)
25 KOG1262 FAD-binding protein DI 70.4 14 0.00031 34.2 6.3 55 5-63 197-251 (543)
26 TIGR00387 glcD glycolate oxida 67.2 3.7 8.1E-05 38.7 2.1 26 273-298 385-411 (413)
27 PRK11230 glycolate oxidase sub 66.0 13 0.00028 36.1 5.6 30 274-303 443-473 (499)
28 KOG4730 D-arabinono-1, 4-lacto 65.2 3.8 8.2E-05 38.5 1.7 35 5-40 186-220 (518)
29 PRK11282 glcE glycolate oxidas 61.2 5.5 0.00012 36.7 2.0 22 278-299 324-346 (352)
30 KOG4730 D-arabinono-1, 4-lacto 60.7 8.6 0.00019 36.3 3.1 22 278-299 485-506 (518)
31 PRK14652 UDP-N-acetylenolpyruv 58.8 7.2 0.00016 35.1 2.3 31 8-38 166-196 (302)
32 PF04753 Corona_NS2: Coronavir 54.2 8.7 0.00019 27.8 1.6 12 21-32 67-78 (109)
33 PF03941 INCENP_ARK-bind: Inne 54.1 3.7 8.1E-05 26.9 -0.3 32 270-307 20-51 (57)
34 PF04334 DUF478: Protein of un 52.8 19 0.0004 23.3 2.8 23 5-28 6-31 (68)
35 TIGR01676 GLDHase galactonolac 46.3 12 0.00026 36.5 1.7 19 281-299 516-534 (541)
36 PLN02465 L-galactono-1,4-lacto 43.3 14 0.0003 36.5 1.6 20 280-299 545-564 (573)
37 PF14658 EF-hand_9: EF-hand do 32.3 32 0.0007 23.3 1.6 15 281-295 35-49 (66)
38 PF03392 OS-D: Insect pheromon 32.2 31 0.00066 25.3 1.6 15 283-297 78-92 (95)
39 COG1350 Predicted alternative 31.9 33 0.00071 31.3 2.0 22 6-28 251-272 (432)
40 PF08077 Cm_res_leader: Chlora 29.5 65 0.0014 15.0 1.8 14 18-32 3-16 (17)
No 1
>PLN02441 cytokinin dehydrogenase
Probab=99.68 E-value=1.1e-14 Score=138.12 Aligned_cols=269 Identities=13% Similarity=0.200 Sum_probs=134.9
Q ss_pred ccCCCCCCeeEEeecCCCCceeEEEEEEEEeeeCCCeeEEEEEecccchhHHHHHHHHHHhhhc-------------ccc
Q 037020 4 NRESMGEDLFWAIRGGGGPSFGIIISWKIELVDVPSTVTVFAIPRTLEQNATKLLHKWQYIADR-------------VHE 70 (312)
Q Consensus 4 ~s~~~n~DLFWAlRGgGg~nFGIVT~~~~k~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-------------~~~ 70 (312)
.|+++|||||||+||| +|+|||||++|+|++|+|+.+......+. ++.++++....+... .|.
T Consensus 209 ~s~~~n~DLF~Av~Gg-lG~fGIIT~atlrL~Pap~~v~~~~~~y~---~~~~~~~d~~~li~~~~~~~~d~veg~~~p~ 284 (525)
T PLN02441 209 CSPTQNSDLFFAVLGG-LGQFGIITRARIALEPAPKRVRWIRVLYS---DFSTFTRDQERLISRPPENSFDYVEGFVIVN 284 (525)
T ss_pred eCCCCChhHHHhhccC-CCCcEEEEEEEEEEEecCCceEEEEEEcC---CHHHHHHHHHHHHhcCCCCCcceEeEEEEeC
Confidence 3788999999999998 68999999999999999985433333332 233333333332210 111
Q ss_pred -ccceeEE----Eee----------cCCceEEE--EEEEEecCcc-----chhhhhhhcCCCCCCCccccccccHHHHHH
Q 037020 71 -DLFISPF----LYR----------ANSTMVCL--FTSLFLGGVD-----RLLPLMQESFPELGLTQEDCREMSFIESVV 128 (312)
Q Consensus 71 -~~~~~~~----~~~----------~~~~~~~~--~~~~~~g~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 128 (312)
.-.+... +.+ ..+..... +...|..+.+ +.+++++. +.-++. ...++.++|.+...
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~le~~~~~~~~~~~~~~~~~~~ll~~-L~~~~~-~~~~~d~~y~~fl~ 362 (525)
T PLN02441 285 RNGLINNWRSSFFSPSDPVRASSLPSDGGVLYCLEVAKYYDEDTSDTVDQEVESLLKR-LSFIPG-LLFTTDVSYVDFLD 362 (525)
T ss_pred CCCceeeeecccCCccccchhhccccCCceEEEEEEEEeeCCCCccchhhHHHHHHhh-cCCCCC-CceecccCHHHHHH
Confidence 0000000 000 01112222 2223332221 22344444 222222 22445667777543
Q ss_pred HHhc----C-ccc--cccccceeeeeccccCCCCHHHHHHHHHHHhcc-C-CCceeEEEEEecCccccccCCCCC--CCc
Q 037020 129 YING----F-EIR--EFIKRFFKGKADYVIEPIPKEAFEGLYDLFYEE-D-PRTYGLLVFFPYGGKMSEISESEI--PFP 197 (312)
Q Consensus 129 ~~~~----~-~~g--~~~~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~gg~~~~~~~~~~--a~~ 197 (312)
.... . ..| .+++ .|. ..| ++...+.++.+.+... . .+....+++.|+..+-. ++.+ ..|
T Consensus 363 rv~~~e~~lr~~G~W~~ph-PWl--nlf----vp~s~i~~f~~~v~~~i~~~~~~G~~liyP~~~~~~---~~~~s~~~P 432 (525)
T PLN02441 363 RVHVEELKLRSKGLWEVPH-PWL--NLF----VPKSRIADFDDGVFKGILLDGTNGPILVYPLNRSKW---DNRTSAVIP 432 (525)
T ss_pred hhhhHHHHHhhcCCcCCCC-chh--hee----CcHHHHHHHHHHHHhhcccccCCCeEEEEecccccC---CCCCccccC
Confidence 2211 0 111 0112 221 122 4555566655543332 2 22345677777653221 2222 235
Q ss_pred ccccceeEEEEEeEeccCChHhHHHHHHHHHHHHhcccccccCCCCceecccccCCCCCCCCCCCCchhhcchhhhhhhh
Q 037020 198 HRAGNRYTLLYYAEWQDATNEASQRHKNMLNKLFNYMNPYVTKNPRTAYINYRDLDIGTNNKLGDTSVQEASVWGKKYFK 277 (312)
Q Consensus 198 ~r~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~Y~Ny~~~~~~~~~~~~~~~~~~~~~~~~~y~g 277 (312)
.-+ .-|.+.+... ..+..+.-+...+..+++.+...... ...-.|+.... + .++|. ..||
T Consensus 433 ~~~-~~y~v~~l~~-~~p~~~~~~~~~~~n~~i~~~~~~~g--~~~k~Yl~~~~---~------------~~~W~-~HfG 492 (525)
T PLN02441 433 DED-IFYLVALLRS-ALPSGDDLEHLLAQNKEILRFCEKAG--IGVKQYLPHYT---T------------QEEWK-RHFG 492 (525)
T ss_pred CCC-eEEEEEEcCC-CCCCcccHHHHHHHHHHHHHHHHHcC--CceEEcCCCCC---C------------HHHHH-HHhc
Confidence 333 3444444332 22221123455555666655443221 11245654332 1 13795 5679
Q ss_pred ccHHHHHHhhhhcCCCCCCCCCCCCCCcccC
Q 037020 278 NNFYRLVHVKTMVDPENFFRNEQSIPPFNLL 308 (312)
Q Consensus 278 ~n~~rL~~vK~kyDP~~vF~~~~~i~~~~~~ 308 (312)
..++|..+.|++|||.+++.-.|.|.+....
T Consensus 493 ~~w~~f~~~K~~yDP~~iL~pgq~if~~~~~ 523 (525)
T PLN02441 493 PKWETFVRRKAKFDPLAILSPGQRIFNRASS 523 (525)
T ss_pred chHHHHHHHHhhCCchhhcCCCCccCCCCCC
Confidence 9999999999999999999999999876543
No 2
>PF08031 BBE: Berberine and berberine like ; InterPro: IPR012951 This domain is found in the berberine bridge and berberine bridge-like enzymes, which are involved in the biosynthesis of numerous isoquinoline alkaloids. They catalyse the transformation of the N-methyl group of (S)-reticuline into the C-8 berberine bridge carbon of (S)-scoulerine [].; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 2IPI_A 2Y3S_A 2Y3R_D 2Y08_B 2Y4G_A 3D2H_A 3FW9_A 3FW8_A 3FWA_A 3D2J_A ....
Probab=99.65 E-value=6.9e-17 Score=102.98 Aligned_cols=47 Identities=45% Similarity=0.813 Sum_probs=34.4
Q ss_pred eecccccCCCCCCCCCCCCchhhcchhhhhhhhccHHHHHHhhhhcCCCCCCCCCCCCC
Q 037020 245 AYINYRDLDIGTNNKLGDTSVQEASVWGKKYFKNNFYRLVHVKTMVDPENFFRNEQSIP 303 (312)
Q Consensus 245 ~Y~Ny~~~~~~~~~~~~~~~~~~~~~~~~~y~g~n~~rL~~vK~kyDP~~vF~~~~~i~ 303 (312)
+|+||+|.+++. +.|.+.|||+|++||++||++|||+|||++.|+|+
T Consensus 1 aY~Ny~d~~~~~------------~~~~~~yyg~n~~rL~~iK~~yDP~n~F~~~q~I~ 47 (47)
T PF08031_consen 1 AYVNYPDPDLPG------------DDWQEAYYGENYDRLRAIKRKYDPDNVFRFPQSIP 47 (47)
T ss_dssp --TTS--GGGGS------------SHHHHHHHGGGHHHHHHHHHHH-TT-TS-STTS--
T ss_pred CcccCCCCccch------------hHHHHHHhchhHHHHHHHHHHhCccceeCCCCCcC
Confidence 599999987641 37889999999999999999999999999999996
No 3
>TIGR01679 bact_FAD_ox FAD-linked oxidoreductase. This model represents a family of bacterial oxidoreductases with covalently linked FAD, closely related to two different eukaryotic oxidases, L-gulonolactone oxidase (EC 1.1.3.8) from rat and D-arabinono-1,4-lactone oxidase (EC 1.1.3.37) from Saccharomyces cerevisiae.
Probab=98.99 E-value=1.2e-08 Score=95.89 Aligned_cols=56 Identities=16% Similarity=0.154 Sum_probs=41.1
Q ss_pred cCCCCCCeeEEeecCCCCceeEEEEEEEEeeeCCCeeEEEEEecccchhHHHHHHHHHHhhh
Q 037020 5 RESMGEDLFWAIRGGGGPSFGIIISWKIELVDVPSTVTVFAIPRTLEQNATKLLHKWQYIAD 66 (312)
Q Consensus 5 s~~~n~DLFWAlRGgGg~nFGIVT~~~~k~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 66 (312)
++++|||||||+||| +|+|||||++|+|++|.... ....... ...++++.+.++..
T Consensus 144 ~~~~~~dLf~a~~g~-~G~lGVIt~vtl~~~p~~~~---~~~~~~~--~~~~~~~~~~~~~~ 199 (419)
T TIGR01679 144 SEGDDQDMYLAARVS-LGALGVISQVTLQTVALFRL---RRRDWRR--PLAQTLERLDEFVD 199 (419)
T ss_pred cCCCCHHHHHHHHhC-CCceEEEEEEEEEeecceEe---EEEEEec--CHHHHHHHHHHHHh
Confidence 678899999999999 68999999999999999862 1122222 24556666666543
No 4
>TIGR01678 FAD_lactone_ox sugar 1,4-lactone oxidases. This model represents a family of at least two different sugar 1,4 lactone oxidases, both involved in synthesizing ascorbic acid or a derivative. These include L-gulonolactone oxidase (EC 1.1.3.8) from rat and D-arabinono-1,4-lactone oxidase (EC 1.1.3.37) from Saccharomyces cerevisiae. Members are proposed to have the cofactor FAD covalently bound at a site specified by Prosite motif PS00862; OX2_COVAL_FAD; 1.
Probab=98.61 E-value=1.3e-06 Score=82.48 Aligned_cols=55 Identities=24% Similarity=0.277 Sum_probs=42.6
Q ss_pred cCCCCCCeeEEeecCCCCceeEEEEEEEEeeeCCCeeEEEEEecccchhHHHHHHHHHHhh
Q 037020 5 RESMGEDLFWAIRGGGGPSFGIIISWKIELVDVPSTVTVFAIPRTLEQNATKLLHKWQYIA 65 (312)
Q Consensus 5 s~~~n~DLFWAlRGgGg~nFGIVT~~~~k~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 65 (312)
++++|+|||||++|| .|+|||||++|+|++|..... ..... ....++++.+.+..
T Consensus 150 s~~~~~dlf~a~~~~-~G~lGIIt~vtl~l~p~~~l~----~~~~~-~~~~~~~~~~~~~~ 204 (438)
T TIGR01678 150 SEERNADVFQAARVS-LGCLGIIVTVTIQVVPQFHLQ----ETSFV-STLKELLDNWDSHW 204 (438)
T ss_pred CCCCChhHHHHHhcC-CCceEeeEEEEEEEEeccceE----EEEec-CCHHHHHHHHHHHh
Confidence 678899999999999 689999999999999987521 11221 23677888887764
No 5
>KOG1231 consensus Proteins containing the FAD binding domain [Energy production and conversion]
Probab=98.46 E-value=6.2e-07 Score=81.79 Aligned_cols=34 Identities=32% Similarity=0.578 Sum_probs=32.1
Q ss_pred cCCCCCCeeEEeecCCCCceeEEEEEEEEeeeCCC
Q 037020 5 RESMGEDLFWAIRGGGGPSFGIIISWKIELVDVPS 39 (312)
Q Consensus 5 s~~~n~DLFWAlRGgGg~nFGIVT~~~~k~~p~~~ 39 (312)
++..|++||.++-|| =|.||||||.++++.|+|+
T Consensus 207 s~r~n~~lf~~vlGg-lGqfGIITrArI~le~aP~ 240 (505)
T KOG1231|consen 207 SKRANSNLFFLVLGG-LGQFGIITRARIKLEPAPK 240 (505)
T ss_pred ccccCceeeeeeecc-CcceeeEEEEEEEeccCCc
Confidence 778999999999999 7999999999999999994
No 6
>TIGR01677 pln_FAD_oxido plant-specific FAD-dependent oxidoreductase. This model represents an uncharacterized plant-specific family of FAD-dependent oxidoreductases. At least seven distinct members are found in Arabidopsis thaliana. The family shows considerable sequence similarity to three different enzymes of ascorbic acid biosynthesis: L-galactono-1,4-lactone dehydrogenase (EC 1.3.2.3) from higher plants, D-arabinono-1,4-lactone oxidase (EC 1.1.3.37 from Saccharomyces cerevisiae, and L-gulonolactone oxidase (EC 1.1.3.8) from mouse, as well as to a bacterial sorbitol oxidase. The class of compound acted on by members of this family is unknown.
Probab=98.27 E-value=7.1e-07 Score=86.26 Aligned_cols=35 Identities=17% Similarity=0.074 Sum_probs=32.2
Q ss_pred ccCCCCCCeeEEeecCCCCceeEEEEEEEEeeeCCC
Q 037020 4 NRESMGEDLFWAIRGGGGPSFGIIISWKIELVDVPS 39 (312)
Q Consensus 4 ~s~~~n~DLFWAlRGgGg~nFGIVT~~~~k~~p~~~ 39 (312)
.|+++|||||||+||| +|+|||||++|+|++|.+.
T Consensus 179 ~s~~~~~dLf~a~rgs-lG~lGVVtevTL~~~P~~~ 213 (557)
T TIGR01677 179 LSEGDTPNEFNAAKVS-LGVLGVISQVTLALQPMFK 213 (557)
T ss_pred eCCCCCHHHHHhhccC-CCccEeeeEEEEEEEcccc
Confidence 4778999999999999 6999999999999999875
No 7
>TIGR01676 GLDHase galactonolactone dehydrogenase. This model represents L-Galactono-gamma-lactone dehydrogenase (EC 1.3.2.3). This enzyme catalyzes the final step in ascorbic acid biosynthesis in higher plants. This protein is homologous to ascorbic acid biosynthesis enzymes of other species: L-gulono-gamma-lactone oxidase in rat and L-galactono-gamma-lactone oxidase in yeast. All three covalently bind the cofactor FAD.
Probab=98.25 E-value=1e-06 Score=84.35 Aligned_cols=55 Identities=15% Similarity=0.219 Sum_probs=42.1
Q ss_pred cCCCCCCeeEEeecCCCCceeEEEEEEEEeeeCCCeeEEEEEecccchhHHHHHHHHHHhh
Q 037020 5 RESMGEDLFWAIRGGGGPSFGIIISWKIELVDVPSTVTVFAIPRTLEQNATKLLHKWQYIA 65 (312)
Q Consensus 5 s~~~n~DLFWAlRGgGg~nFGIVT~~~~k~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 65 (312)
++++|||||||+||| .|+|||||++|+|+.|.+... ...+.. ...++++.+.++.
T Consensus 197 s~~~~pdLF~Aargs-lG~LGVItevTLr~~Pa~~l~---~~~~~~--~~~e~l~~~~~~~ 251 (541)
T TIGR01676 197 SKDKDPELFFLARCG-LGGLGVVAEVTLQCVERQELV---EHTFIS--NMKDIKKNHKKFL 251 (541)
T ss_pred CCCCCHHHHHHHhcC-CCceEeEEEEEEEEEecccee---EEEEec--CHHHHHHHHHHHH
Confidence 678899999999999 689999999999999998631 222222 3566777776654
No 8
>PRK11282 glcE glycolate oxidase FAD binding subunit; Provisional
Probab=98.02 E-value=4.2e-06 Score=76.53 Aligned_cols=53 Identities=15% Similarity=0.310 Sum_probs=38.1
Q ss_pred CCCCeeEEeecCCCCceeEEEEEEEEeeeCCCeeEEEEEecccchhHHHHHHHHHHhh
Q 037020 8 MGEDLFWAIRGGGGPSFGIIISWKIELVDVPSTVTVFAIPRTLEQNATKLLHKWQYIA 65 (312)
Q Consensus 8 ~n~DLFWAlRGgGg~nFGIVT~~~~k~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 65 (312)
.++||||+++|+ .|+|||||++|+|++|.|... ..+.+.++ ..+.++++.++.
T Consensus 141 ~G~DL~~l~~Gs-~GtLGVitevtlkl~P~p~~~--~t~~~~~~--~~~a~~~~~~~~ 193 (352)
T PRK11282 141 AGYDVSRLMAGS-LGTLGVLLEVSLKVLPRPRAE--LTLRLEMD--AAEALRKLNEWG 193 (352)
T ss_pred CCchHHHHHhhC-CchhhhheEEEEEEEecCceE--EEEEEecC--HHHHHHHHHHHh
Confidence 468999999999 699999999999999999743 23333333 233455555543
No 9
>COG0277 GlcD FAD/FMN-containing dehydrogenases [Energy production and conversion]
Probab=97.89 E-value=0.00011 Score=70.16 Aligned_cols=35 Identities=14% Similarity=0.123 Sum_probs=29.8
Q ss_pred hhhhhhhhccHHHHHHhhhhcCCCCCCCCCCCCCC
Q 037020 270 VWGKKYFKNNFYRLVHVKTMVDPENFFRNEQSIPP 304 (312)
Q Consensus 270 ~~~~~y~g~n~~rL~~vK~kyDP~~vF~~~~~i~~ 304 (312)
.|...|+++.+++|+++|+.|||+|+|+..+-+++
T Consensus 424 ~~~~~~~~~~~~~~~~~k~~~DP~~i~npg~~~~~ 458 (459)
T COG0277 424 EFLELEPGEAWALLRAIKRAFDPNGIFNPGKLFRL 458 (459)
T ss_pred HHHHHHHhHHHHHHHHHHHhcCCCCCCCCCccCCC
Confidence 56667777889999999999999999998877654
No 10
>PLN02805 D-lactate dehydrogenase [cytochrome]
Probab=97.81 E-value=3e-05 Score=75.27 Aligned_cols=33 Identities=24% Similarity=0.428 Sum_probs=29.9
Q ss_pred CCCCeeEEeecCCCCceeEEEEEEEEeeeCCCee
Q 037020 8 MGEDLFWAIRGGGGPSFGIIISWKIELVDVPSTV 41 (312)
Q Consensus 8 ~n~DLFWAlRGgGg~nFGIVT~~~~k~~p~~~~~ 41 (312)
.++||||+++|+ .|+|||||++++|++|.|+..
T Consensus 279 ~g~dL~~l~~Gs-eGtLGIIT~~tlrl~p~P~~~ 311 (555)
T PLN02805 279 AGYDLTRLVIGS-EGTLGVITEVTLRLQKIPQHS 311 (555)
T ss_pred CCccHHHHhccC-CCceEEEEEEEEEeecCCcce
Confidence 468999999999 689999999999999999754
No 11
>PLN02465 L-galactono-1,4-lactone dehydrogenase
Probab=97.72 E-value=4e-05 Score=74.12 Aligned_cols=55 Identities=11% Similarity=0.114 Sum_probs=41.2
Q ss_pred cCCCCCCeeEEeecCCCCceeEEEEEEEEeeeCCCeeEEEEEecccchhHHHHHHHHHHhh
Q 037020 5 RESMGEDLFWAIRGGGGPSFGIIISWKIELVDVPSTVTVFAIPRTLEQNATKLLHKWQYIA 65 (312)
Q Consensus 5 s~~~n~DLFWAlRGgGg~nFGIVT~~~~k~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 65 (312)
++++|||||||+||| .|.|||||++|+|+.|.... ...++..+ ..++++.+.++.
T Consensus 232 s~~~~pdLF~aar~g-lG~lGVIteVTLql~P~~~L---~~~~~~~~--~~~~~~~~~~~~ 286 (573)
T PLN02465 232 SKEDDPELFRLARCG-LGGLGVVAEVTLQCVPAHRL---VEHTFVSN--RKEIKKNHKKWL 286 (573)
T ss_pred CCCCCHHHHhHhhcc-CCCCcEEEEEEEEEEecCce---EEEEEEec--HHHHHHHHHHHH
Confidence 677899999999999 68899999999999999863 22233322 455666666654
No 12
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=97.70 E-value=6.4e-05 Score=72.29 Aligned_cols=53 Identities=17% Similarity=0.220 Sum_probs=38.4
Q ss_pred CCCCeeEEeecCCCCceeEEEEEEEEeeeCCCeeEEEEEecccchhHHHHHHHHHHh
Q 037020 8 MGEDLFWAIRGGGGPSFGIIISWKIELVDVPSTVTVFAIPRTLEQNATKLLHKWQYI 64 (312)
Q Consensus 8 ~n~DLFWAlRGgGg~nFGIVT~~~~k~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 64 (312)
.++||+|+++|+ .|+|||||+.|+|++|.|+.. ....+.|+ +..++++++.++
T Consensus 202 ~g~dl~~l~~Gs-~GtlGIIt~atlkl~p~p~~~--~~~~~~f~-~~~~a~~~~~~~ 254 (499)
T PRK11230 202 PGFDLLALFTGS-EGMLGVVTEVTVKLLPKPPVA--RVLLASFD-SVEKAGLAVGDI 254 (499)
T ss_pred CccchHhhhccC-CCccEEEEEEEEEEEcCCcce--EEEEEECC-CHHHHHHHHHHH
Confidence 479999999999 689999999999999999743 23333443 244445444443
No 13
>TIGR00387 glcD glycolate oxidase, subunit GlcD. This protein, the glycolate oxidase GlcD subunit, is similar in sequence to that of several D-lactate dehydrogenases, including that of E. coli. The glycolate oxidase has been found to have some D-lactate dehydrogenase activity.
Probab=97.30 E-value=0.0005 Score=64.74 Aligned_cols=34 Identities=24% Similarity=0.386 Sum_probs=30.0
Q ss_pred CCCCCeeEEeecCCCCceeEEEEEEEEeeeCCCee
Q 037020 7 SMGEDLFWAIRGGGGPSFGIIISWKIELVDVPSTV 41 (312)
Q Consensus 7 ~~n~DLFWAlRGgGg~nFGIVT~~~~k~~p~~~~~ 41 (312)
...+||+|.+.|+ .|+|||||++++|++|.|+..
T Consensus 144 ~~g~dl~~l~~Gs-~GtlGiit~~~lkl~p~p~~~ 177 (413)
T TIGR00387 144 VAGYDLTGLFVGS-EGTLGIVTEATLKLLPKPENI 177 (413)
T ss_pred CCCCChhhhcccC-CccceEEEEEEEEeecCCCcc
Confidence 3467999999999 689999999999999999753
No 14
>PF09265 Cytokin-bind: Cytokinin dehydrogenase 1, FAD and cytokinin binding; InterPro: IPR015345 This domain adopts an alpha+beta sandwich structure with an antiparallel beta-sheet, in a ferredoxin-like fold. It is predominantly found in plant cytokinin dehydrogenase 1, where it is capable of binding both FAD and cytokinin substrates. The substrate displays a 'plug-into-socket' binding mode that seals the catalytic site and precisely positions the carbon atom undergoing oxidation in close contact with the reactive locus of the flavin []. ; GO: 0019139 cytokinin dehydrogenase activity, 0050660 flavin adenine dinucleotide binding, 0009690 cytokinin metabolic process, 0055114 oxidation-reduction process; PDB: 2EXR_A 2Q4W_A 3S1E_A 1W1Q_A 2QPM_A 3C0P_A 3BW7_A 3S1C_A 1W1S_A 2QKN_A ....
Probab=96.69 E-value=0.0066 Score=53.51 Aligned_cols=128 Identities=14% Similarity=0.214 Sum_probs=63.3
Q ss_pred CCHHHHHHHHHHHhcc-C--CCceeEEEEEecCccccccCCCCC-CCcccccceeEEEEEeEecc-CChHhHHHHHHHHH
Q 037020 154 IPKEAFEGLYDLFYEE-D--PRTYGLLVFFPYGGKMSEISESEI-PFPHRAGNRYTLLYYAEWQD-ATNEASQRHKNMLN 228 (312)
Q Consensus 154 l~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~gg~~~~~~~~~~-a~~~r~~~~~~~~~~~~w~~-~~~~~~~~~~~~~~ 228 (312)
++...+.++.+.+... . .+..+.+++.|+..+- .....+ ..|..+ ..|.+.+...-.. ...+.-+...+..+
T Consensus 148 vP~s~i~dF~~~V~~~il~~~~~~GpiLvYP~~~~k--wd~~~s~v~Pde~-vfylv~lLrsa~P~~~~~~l~~l~~qN~ 224 (281)
T PF09265_consen 148 VPKSRIEDFDRGVFKGILKDDGNSGPILVYPLNRSK--WDTRMSAVIPDED-VFYLVALLRSADPSDGPDDLERLLEQNR 224 (281)
T ss_dssp EEHHHHHHHHHHCCCCCTTTS-S-SEEEEEEEEGGG--S-TTSS----SSS-EEEEEEEEE---TTSSCCHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHhhccCCCCceEEEEEecccc--cCCCCcccCCCCC-eEEEEEEeCCCCCCCCchhHHHHHHHHH
Confidence 4667777777765442 1 2233577777765321 111112 234444 4555555444311 11123355566666
Q ss_pred HHHhcccccccCCCCceecccccCCCCCCCCCCCCchhhcchhhhhhhhccHHHHHHhhhhcCCCCCCCCCCCC
Q 037020 229 KLFNYMNPYVTKNPRTAYINYRDLDIGTNNKLGDTSVQEASVWGKKYFKNNFYRLVHVKTMVDPENFFRNEQSI 302 (312)
Q Consensus 229 ~~~~~l~~~~~~~~~~~Y~Ny~~~~~~~~~~~~~~~~~~~~~~~~~y~g~n~~rL~~vK~kyDP~~vF~~~~~i 302 (312)
++.+...... .....|+.... + .++|. ..||..++|+.+.|++|||.+++.-.|.|
T Consensus 225 ~il~~c~~ag--i~~k~Yl~~~~---t------------~~dW~-~HFG~~W~~f~~~K~~yDP~~IL~PGq~I 280 (281)
T PF09265_consen 225 RILEFCRKAG--IGGKQYLPHYT---T------------QEDWR-RHFGPKWERFVERKRRYDPKAILAPGQGI 280 (281)
T ss_dssp HHHHHHHHTT----EEESS---S---S------------HHHHH-HHHGHHHHHHHHHHHHH-TT--B-GGG-S
T ss_pred HHHHHHHHcC--CceEECCCCCC---C------------HHHHH-HHhchHHHHHHHHHHhCCchhhcCCCCCC
Confidence 6665543221 11344553331 1 13895 56799999999999999999999998887
No 15
>PRK13905 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=94.17 E-value=0.022 Score=51.22 Aligned_cols=30 Identities=20% Similarity=0.089 Sum_probs=25.7
Q ss_pred CCCeeEEeecCCCC-ceeEEEEEEEEeeeCC
Q 037020 9 GEDLFWAIRGGGGP-SFGIIISWKIELVDVP 38 (312)
Q Consensus 9 n~DLFWAlRGgGg~-nFGIVT~~~~k~~p~~ 38 (312)
+.||+|+.|+.++. .+||||+.+||++|..
T Consensus 163 ~~e~~~~yR~s~~~~~~gII~~~~l~l~~~~ 193 (298)
T PRK13905 163 NEELGFGYRHSALQEEGLIVLSATFQLEPGD 193 (298)
T ss_pred HHHcCCcCccccCCCCCEEEEEEEEEEcCCC
Confidence 56999999997544 4899999999999874
No 16
>PF04030 ALO: D-arabinono-1,4-lactone oxidase ; InterPro: IPR007173 This domain is specific to D-arabinono-1,4-lactone oxidase 1.1.3.37 from EC, which is involved in the final step of the D-erythroascorbic acid biosynthesis pathway [].; GO: 0003885 D-arabinono-1,4-lactone oxidase activity, 0055114 oxidation-reduction process, 0016020 membrane; PDB: 2VFU_A 2VFV_A 2VFT_A 2VFS_A 2VFR_A.
Probab=92.16 E-value=0.39 Score=42.18 Aligned_cols=22 Identities=23% Similarity=0.511 Sum_probs=17.1
Q ss_pred ccHHHHHHhhhhcCCCCCCCCC
Q 037020 278 NNFYRLVHVKTMVDPENFFRNE 299 (312)
Q Consensus 278 ~n~~rL~~vK~kyDP~~vF~~~ 299 (312)
.++++..++|+++||+|+|.+.
T Consensus 233 p~~~~F~~~r~~~DP~g~F~n~ 254 (259)
T PF04030_consen 233 PRLDDFLAVRKKLDPQGVFLND 254 (259)
T ss_dssp TTHHHHHHHHHHH-TT-TT--H
T ss_pred cCHHHHHHHHHHhCCCCCCCCH
Confidence 8999999999999999999864
No 17
>PF02913 FAD-oxidase_C: FAD linked oxidases, C-terminal domain; InterPro: IPR004113 Some oxygen-dependent oxidoreductases are flavoproteins that contain a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage. The region around the histidine that binds the FAD group is conserved in these enzymes (see IPR006093 from INTERPRO).; GO: 0003824 catalytic activity, 0050660 flavin adenine dinucleotide binding; PDB: 1WVE_B 1DII_B 1WVF_A 1DIQ_A 2UUU_B 2UUV_A 1W1M_A 1E8H_B 1E0Y_B 1DZN_B ....
Probab=88.44 E-value=0.64 Score=39.87 Aligned_cols=24 Identities=13% Similarity=0.285 Sum_probs=18.4
Q ss_pred hhh-ccHHHHHHhhhhcCCCCCCCC
Q 037020 275 YFK-NNFYRLVHVKTMVDPENFFRN 298 (312)
Q Consensus 275 y~g-~n~~rL~~vK~kyDP~~vF~~ 298 (312)
.+| ..++-+++||+.+||+|+++-
T Consensus 221 ~~~~~~~~~~~~iK~~~DP~~ilNP 245 (248)
T PF02913_consen 221 EYGPAALRLMRAIKQAFDPNGILNP 245 (248)
T ss_dssp HCHHHHHHHHHHHHHHH-TTS-BST
T ss_pred hcchHHHHHHHHhhhccCCccCCCC
Confidence 345 479999999999999999874
No 18
>KOG1233 consensus Alkyl-dihydroxyacetonephosphate synthase [General function prediction only]
Probab=87.77 E-value=1.2 Score=40.94 Aligned_cols=54 Identities=19% Similarity=0.255 Sum_probs=37.9
Q ss_pred CCCCCeeEEeecCCCCceeEEEEEEEEeeeCCCeeEEEEEecccchhHHHHHHHHHHh
Q 037020 7 SMGEDLFWAIRGGGGPSFGIIISWKIELVDVPSTVTVFAIPRTLEQNATKLLHKWQYI 64 (312)
Q Consensus 7 ~~n~DLFWAlRGgGg~nFGIVT~~~~k~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 64 (312)
++.||.---+-|. -|.+||||+.|+|.+|.|..- --+.+.|+ ++..-+..+++.
T Consensus 310 S~GPDihh~IlGS-EGTLGVitEvtiKirPiPe~~--ryGS~aFP-NFEqGV~f~REv 363 (613)
T KOG1233|consen 310 SSGPDIHHIILGS-EGTLGVITEVTIKIRPIPEVK--RYGSFAFP-NFEQGVNFFREV 363 (613)
T ss_pred cCCCCcceEEecc-CcceeEEEEEEEEEeechhhh--hcCccccC-cHHHHHHHHHHH
Confidence 4578999999999 799999999999999999732 23344444 233333344443
No 19
>PLN00107 FAD-dependent oxidoreductase; Provisional
Probab=85.08 E-value=1.6 Score=37.98 Aligned_cols=23 Identities=30% Similarity=0.488 Sum_probs=21.1
Q ss_pred ccHHHHHHhhhhcCCCCCCCCCC
Q 037020 278 NNFYRLVHVKTMVDPENFFRNEQ 300 (312)
Q Consensus 278 ~n~~rL~~vK~kyDP~~vF~~~~ 300 (312)
.++++.++||+++||+++|.+.+
T Consensus 176 Pr~~dFlavR~~lDP~G~F~N~y 198 (257)
T PLN00107 176 KKAGEFLKVKERLDPEGLFSSEW 198 (257)
T ss_pred cCHHHHHHHHHHhCCCCccCCHH
Confidence 78999999999999999999873
No 20
>KOG1232 consensus Proteins containing the FAD binding domain [Energy production and conversion]
Probab=83.47 E-value=38 Score=31.41 Aligned_cols=23 Identities=22% Similarity=0.382 Sum_probs=19.8
Q ss_pred cCCCCceeEEEEEEEEeeeCCCee
Q 037020 18 GGGGPSFGIIISWKIELVDVPSTV 41 (312)
Q Consensus 18 GgGg~nFGIVT~~~~k~~p~~~~~ 41 (312)
|. -|..||||...+=+-|.|+.+
T Consensus 247 GS-EGtlGVvT~vSil~~~kpksv 269 (511)
T KOG1232|consen 247 GS-EGTLGVVTKVSILAPPKPKSV 269 (511)
T ss_pred cC-CceeeEEeeEEEeecCCCcce
Confidence 55 579999999999999999743
No 21
>PRK13903 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=82.95 E-value=0.82 Score=42.21 Aligned_cols=31 Identities=13% Similarity=0.142 Sum_probs=25.5
Q ss_pred CCCCeeEEeecC--CCCceeEEEEEEEEeeeCC
Q 037020 8 MGEDLFWAIRGG--GGPSFGIIISWKIELVDVP 38 (312)
Q Consensus 8 ~n~DLFWAlRGg--Gg~nFGIVT~~~~k~~p~~ 38 (312)
.+.||+|+.|+. .+++++|||+++||++|..
T Consensus 165 ~~~el~f~YR~S~f~~~~~~IIl~a~f~L~~~~ 197 (363)
T PRK13903 165 PAADLGFGYRTSVLKHSDRAVVLEVEFQLDPSG 197 (363)
T ss_pred EHHHcceeccccccCCCCCEEEEEEEEEEEcCC
Confidence 478999999993 1347899999999999873
No 22
>TIGR01677 pln_FAD_oxido plant-specific FAD-dependent oxidoreductase. This model represents an uncharacterized plant-specific family of FAD-dependent oxidoreductases. At least seven distinct members are found in Arabidopsis thaliana. The family shows considerable sequence similarity to three different enzymes of ascorbic acid biosynthesis: L-galactono-1,4-lactone dehydrogenase (EC 1.3.2.3) from higher plants, D-arabinono-1,4-lactone oxidase (EC 1.1.3.37 from Saccharomyces cerevisiae, and L-gulonolactone oxidase (EC 1.1.3.8) from mouse, as well as to a bacterial sorbitol oxidase. The class of compound acted on by members of this family is unknown.
Probab=79.67 E-value=8.7 Score=37.76 Aligned_cols=23 Identities=30% Similarity=0.486 Sum_probs=21.0
Q ss_pred ccHHHHHHhhhhcCCCCCCCCCC
Q 037020 278 NNFYRLVHVKTMVDPENFFRNEQ 300 (312)
Q Consensus 278 ~n~~rL~~vK~kyDP~~vF~~~~ 300 (312)
.++++.++|++++||+++|.+.+
T Consensus 482 P~~~dF~alR~~~DP~g~F~N~y 504 (557)
T TIGR01677 482 PNADKFLKVKDSYDPKGLFSSEW 504 (557)
T ss_pred CCHHHHHHHHHhcCCCCccCCHH
Confidence 59999999999999999999873
No 23
>PLN02805 D-lactate dehydrogenase [cytochrome]
Probab=78.44 E-value=5.5 Score=39.12 Aligned_cols=35 Identities=23% Similarity=0.451 Sum_probs=28.0
Q ss_pred hhhhhhhh-ccHHHHHHhhhhcCCCCCCCCCCCCCC
Q 037020 270 VWGKKYFK-NNFYRLVHVKTMVDPENFFRNEQSIPP 304 (312)
Q Consensus 270 ~~~~~y~g-~n~~rL~~vK~kyDP~~vF~~~~~i~~ 304 (312)
.|-..+|| +.++-+++||+.+||+|+++-..-++|
T Consensus 516 ~~l~~~~g~~~~~lm~~IK~a~DP~gILNPGKi~~~ 551 (555)
T PLN02805 516 KYLEKELGIEALQTMKRIKKALDPNNIMNPGKLIPP 551 (555)
T ss_pred HHHHHhcCHHHHHHHHHHHHHhCcCcCCCCCceeCc
Confidence 45555666 679999999999999999998765554
No 24
>PRK11183 D-lactate dehydrogenase; Provisional
Probab=74.05 E-value=5.3 Score=38.82 Aligned_cols=52 Identities=12% Similarity=0.116 Sum_probs=33.5
Q ss_pred CCCeeEEe--ecCCCCceeEEEEEEEEeeeCCCeeEEEEEecccchhHHHHHHHHH
Q 037020 9 GEDLFWAI--RGGGGPSFGIIISWKIELVDVPSTVTVFAIPRTLEQNATKLLHKWQ 62 (312)
Q Consensus 9 n~DLFWAl--RGgGg~nFGIVT~~~~k~~p~~~~~~~~~~~~~~~~~~~~~l~~~~ 62 (312)
|.||--=. -|. -|.+||+ ..+++|||.|+....+-+.+.-.+.+.++.+.+.
T Consensus 237 naDl~~LfeasGs-eGkLgV~-avrLdtfp~p~~~~vf~ig~n~~~~~~~~rr~il 290 (564)
T PRK11183 237 NADPRRLFEASGC-AGKLAVF-AVRLDTFPAEKNTQVFYIGTNDPAVLTEIRRHIL 290 (564)
T ss_pred cCCHHHHhhccCC-CceEEEE-EEEeccccCCCcceEEEEeCCCHHHHHHHHHHHH
Confidence 55654444 577 6899999 9999999999755444444443333444444443
No 25
>KOG1262 consensus FAD-binding protein DIMINUTO [General function prediction only]
Probab=70.42 E-value=14 Score=34.15 Aligned_cols=55 Identities=18% Similarity=0.266 Sum_probs=39.7
Q ss_pred cCCCCCCeeEEeecCCCCceeEEEEEEEEeeeCCCeeEEEEEecccchhHHHHHHHHHH
Q 037020 5 RESMGEDLFWAIRGGGGPSFGIIISWKIELVDVPSTVTVFAIPRTLEQNATKLLHKWQY 63 (312)
Q Consensus 5 s~~~n~DLFWAlRGgGg~nFGIVT~~~~k~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~ 63 (312)
..++|+|||.|+--. .|+.|-.+..++|..|..+-+ -.+|.-.....++-+.+.+
T Consensus 197 ~dne~sdLfyaiPWS-qGTlgfLVaatiriIkvK~Yv---kltyip~~~l~e~c~k~~e 251 (543)
T KOG1262|consen 197 PDNEHSDLFYAIPWS-QGTLGFLVAATIRIIKVKKYV---KLTYIPVHGLDEYCKKITE 251 (543)
T ss_pred CCcccCceEEEcccc-cCchheeeeeEEEEEeccceE---EEEEEecccHHHHHHHHHh
Confidence 345899999999999 899999999999999998743 3444322223444444444
No 26
>TIGR00387 glcD glycolate oxidase, subunit GlcD. This protein, the glycolate oxidase GlcD subunit, is similar in sequence to that of several D-lactate dehydrogenases, including that of E. coli. The glycolate oxidase has been found to have some D-lactate dehydrogenase activity.
Probab=67.25 E-value=3.7 Score=38.70 Aligned_cols=26 Identities=19% Similarity=0.396 Sum_probs=21.4
Q ss_pred hhhhh-ccHHHHHHhhhhcCCCCCCCC
Q 037020 273 KKYFK-NNFYRLVHVKTMVDPENFFRN 298 (312)
Q Consensus 273 ~~y~g-~n~~rL~~vK~kyDP~~vF~~ 298 (312)
...|+ ..++-|++||+.+||+|+++-
T Consensus 385 ~~~~~~~~~~~~~~iK~~fDP~~ilNP 411 (413)
T TIGR00387 385 PYKFNEKELETMRAIKKAFDPDNILNP 411 (413)
T ss_pred HHhcCHHHHHHHHHHHHHcCcCcCCCC
Confidence 34445 579999999999999999874
No 27
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=65.95 E-value=13 Score=36.05 Aligned_cols=30 Identities=23% Similarity=0.484 Sum_probs=25.1
Q ss_pred hhhh-ccHHHHHHhhhhcCCCCCCCCCCCCC
Q 037020 274 KYFK-NNFYRLVHVKTMVDPENFFRNEQSIP 303 (312)
Q Consensus 274 ~y~g-~n~~rL~~vK~kyDP~~vF~~~~~i~ 303 (312)
..|| +.++-+++||+.+||+|+++-..-++
T Consensus 443 ~~~g~~~~~~m~~IK~~fDP~~iLNPGk~~~ 473 (499)
T PRK11230 443 AQFNSDEITLFHAVKAAFDPDGLLNPGKNIP 473 (499)
T ss_pred HhcCHHHHHHHHHHHHHcCCCcCCCCCeEeC
Confidence 3445 77999999999999999999876664
No 28
>KOG4730 consensus D-arabinono-1, 4-lactone oxidase [Defense mechanisms]
Probab=65.17 E-value=3.8 Score=38.54 Aligned_cols=35 Identities=20% Similarity=0.208 Sum_probs=31.8
Q ss_pred cCCCCCCeeEEeecCCCCceeEEEEEEEEeeeCCCe
Q 037020 5 RESMGEDLFWAIRGGGGPSFGIIISWKIELVDVPST 40 (312)
Q Consensus 5 s~~~n~DLFWAlRGgGg~nFGIVT~~~~k~~p~~~~ 40 (312)
|++..||||-|.|=+ =|-.|||.+.|+++.|.-+.
T Consensus 186 s~e~dpe~F~AAkvS-LG~LGVIs~VTl~~vp~Fk~ 220 (518)
T KOG4730|consen 186 SEEKDPELFNAAKVS-LGVLGVISQVTLSVVPAFKR 220 (518)
T ss_pred cccCCHHHHhhhhhc-ccceeEEEEEEEEEEeccee
Confidence 677889999999998 78999999999999999874
No 29
>PRK11282 glcE glycolate oxidase FAD binding subunit; Provisional
Probab=61.17 E-value=5.5 Score=36.70 Aligned_cols=22 Identities=18% Similarity=0.259 Sum_probs=19.0
Q ss_pred cc-HHHHHHhhhhcCCCCCCCCC
Q 037020 278 NN-FYRLVHVKTMVDPENFFRNE 299 (312)
Q Consensus 278 ~n-~~rL~~vK~kyDP~~vF~~~ 299 (312)
.+ .+..++||+++||.++|+..
T Consensus 324 ~~~~~l~~~lK~~fDP~~ilnpg 346 (352)
T PRK11282 324 APLLRIHRRLKQAFDPAGIFNPG 346 (352)
T ss_pred HHHHHHHHHHHHhcCcccCCCCC
Confidence 45 78889999999999999864
No 30
>KOG4730 consensus D-arabinono-1, 4-lactone oxidase [Defense mechanisms]
Probab=60.70 E-value=8.6 Score=36.25 Aligned_cols=22 Identities=27% Similarity=0.668 Sum_probs=20.1
Q ss_pred ccHHHHHHhhhhcCCCCCCCCC
Q 037020 278 NNFYRLVHVKTMVDPENFFRNE 299 (312)
Q Consensus 278 ~n~~rL~~vK~kyDP~~vF~~~ 299 (312)
.|+.+..+||+++||.+||...
T Consensus 485 ~n~~~flkvr~~lDP~~lFsse 506 (518)
T KOG4730|consen 485 KNLDKFLKVRKELDPKGLFSSE 506 (518)
T ss_pred cChHHHHHHHHhcCccchhhhh
Confidence 8999999999999999999544
No 31
>PRK14652 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=58.76 E-value=7.2 Score=35.13 Aligned_cols=31 Identities=19% Similarity=0.084 Sum_probs=23.9
Q ss_pred CCCCeeEEeecCCCCceeEEEEEEEEeeeCC
Q 037020 8 MGEDLFWAIRGGGGPSFGIIISWKIELVDVP 38 (312)
Q Consensus 8 ~n~DLFWAlRGgGg~nFGIVT~~~~k~~p~~ 38 (312)
...|+.|+.|+..=+..||||+.+||++|..
T Consensus 166 ~~~e~~f~YR~s~~~~~~II~~a~~~L~~~~ 196 (302)
T PRK14652 166 PAAALGYAYRTCRLPPGAVITRVEVRLRPGD 196 (302)
T ss_pred ehhhcCcccceeccCCCeEEEEEEEEEecCC
Confidence 3579999999963112389999999999854
No 32
>PF04753 Corona_NS2: Coronavirus non-structural protein NS2; InterPro: IPR006841 This is a family of Coronavirus nonstructural protein NS2. Phosphoamino acid analysis confirmed the phosphorylated nature of NS2 and identified serine and threonine as its phosphorylated amino acid residues []. It was also demonstrated that the ns2 gene product is not essential for Murine hepatitis virus replication in transformed murine cells [].
Probab=54.24 E-value=8.7 Score=27.79 Aligned_cols=12 Identities=33% Similarity=0.634 Sum_probs=10.2
Q ss_pred CCceeEEEEEEE
Q 037020 21 GPSFGIIISWKI 32 (312)
Q Consensus 21 g~nFGIVT~~~~ 32 (312)
..+|||||+||-
T Consensus 67 ~~~fgvItsFTa 78 (109)
T PF04753_consen 67 DKYFGVITSFTA 78 (109)
T ss_pred ccceeeEEeeeh
Confidence 679999999873
No 33
>PF03941 INCENP_ARK-bind: Inner centromere protein, ARK binding region; InterPro: IPR005635 This region of the inner centromere protein has been found to be necessary and sufficient for binding to aurora-related kinase. This interaction has been implicated in the coordination of chromosome segregation with cell division in yeast [].; PDB: 2BFX_C 2BFY_C 3ZTX_D 2VGO_D 2VGP_D 2VRX_D 4AF3_D.
Probab=54.13 E-value=3.7 Score=26.93 Aligned_cols=32 Identities=31% Similarity=0.758 Sum_probs=23.0
Q ss_pred hhhhhhhhccHHHHHHhhhhcCCCCCCCCCCCCCCccc
Q 037020 270 VWGKKYFKNNFYRLVHVKTMVDPENFFRNEQSIPPFNL 307 (312)
Q Consensus 270 ~~~~~y~g~n~~rL~~vK~kyDP~~vF~~~~~i~~~~~ 307 (312)
.|.+ +.++.+...-.+.+||.-+|.. |+|.+|
T Consensus 20 ~WA~---~~~L~~~L~~Q~~~Dpd~IFG~---~~~~~L 51 (57)
T PF03941_consen 20 SWAQ---SPNLRQALKKQQNIDPDEIFGP---IPPLNL 51 (57)
T ss_dssp GGGS---HHHHHHHHHHHHHS-HHHHCTT---SB---C
T ss_pred CCcC---cHHHHHHHHHHhccCHHHHcCC---CCCCCH
Confidence 6775 6889988888889999999974 566655
No 34
>PF04334 DUF478: Protein of unknown function (DUF478); InterPro: IPR007429 This family contains uncharacterised protein encoded on Trypanosomal kinetoplast minicircles.
Probab=52.77 E-value=19 Score=23.31 Aligned_cols=23 Identities=35% Similarity=0.715 Sum_probs=17.4
Q ss_pred cCCCCCCeeEEe---ecCCCCceeEEE
Q 037020 5 RESMGEDLFWAI---RGGGGPSFGIII 28 (312)
Q Consensus 5 s~~~n~DLFWAl---RGgGg~nFGIVT 28 (312)
+.-.||=|||++ ||- .-.-||+.
T Consensus 6 ~~ytnpvlfwgifevrgt-skgvgvil 31 (68)
T PF04334_consen 6 YTYTNPVLFWGIFEVRGT-SKGVGVIL 31 (68)
T ss_pred ecCcCceEEEEEEEEeec-ccceEEEE
Confidence 456799999996 887 56677654
No 35
>TIGR01676 GLDHase galactonolactone dehydrogenase. This model represents L-Galactono-gamma-lactone dehydrogenase (EC 1.3.2.3). This enzyme catalyzes the final step in ascorbic acid biosynthesis in higher plants. This protein is homologous to ascorbic acid biosynthesis enzymes of other species: L-gulono-gamma-lactone oxidase in rat and L-galactono-gamma-lactone oxidase in yeast. All three covalently bind the cofactor FAD.
Probab=46.28 E-value=12 Score=36.54 Aligned_cols=19 Identities=16% Similarity=0.324 Sum_probs=16.8
Q ss_pred HHHHHhhhhcCCCCCCCCC
Q 037020 281 YRLVHVKTMVDPENFFRNE 299 (312)
Q Consensus 281 ~rL~~vK~kyDP~~vF~~~ 299 (312)
++.++|++++||+++|.+.
T Consensus 516 d~F~~~R~~lDP~g~F~N~ 534 (541)
T TIGR01676 516 DASNKARKALDPNKILSNN 534 (541)
T ss_pred HHHHHHHHHhCCCCccccH
Confidence 5679999999999999875
No 36
>PLN02465 L-galactono-1,4-lactone dehydrogenase
Probab=43.29 E-value=14 Score=36.47 Aligned_cols=20 Identities=15% Similarity=0.355 Sum_probs=18.7
Q ss_pred HHHHHHhhhhcCCCCCCCCC
Q 037020 280 FYRLVHVKTMVDPENFFRNE 299 (312)
Q Consensus 280 ~~rL~~vK~kyDP~~vF~~~ 299 (312)
+++.++|++++||+++|.+.
T Consensus 545 ~d~F~~~R~~lDP~g~f~N~ 564 (573)
T PLN02465 545 VDAFNKARKELDPKGILSNN 564 (573)
T ss_pred HHHHHHHHHHhCCCCccCCH
Confidence 89999999999999999875
No 37
>PF14658 EF-hand_9: EF-hand domain
Probab=32.31 E-value=32 Score=23.33 Aligned_cols=15 Identities=27% Similarity=0.324 Sum_probs=13.3
Q ss_pred HHHHHhhhhcCCCCC
Q 037020 281 YRLVHVKTMVDPENF 295 (312)
Q Consensus 281 ~rL~~vK~kyDP~~v 295 (312)
.+|+.+.+.+||++-
T Consensus 35 ~~Lq~l~~elDP~g~ 49 (66)
T PF14658_consen 35 SELQDLINELDPEGR 49 (66)
T ss_pred HHHHHHHHHhCCCCC
Confidence 389999999999985
No 38
>PF03392 OS-D: Insect pheromone-binding family, A10/OS-D; InterPro: IPR005055 A class of small (14-20 Kd) water-soluble proteins, called odorant binding proteins (OBPs), first discovered in the insect sensillar lymph but also in the mucus of vertebrates, is postulated to mediate the solubilisation of hydrophobic odorant molecules, and thereby to facilitate their transport to the receptor neurons. The product of a gene expressed in the olfactory system of Drosophila melanogaster (Fruit fly), OS-D, shares features common to vertebrate odorant-binding proteins, but has a primary structure unlike odorant-binding proteins []. OS-D derivatives have subsequently been found in chemosensory organs of phylogenetically distinct insects, including cockroaches, phasmids and moths, suggesting that OS-D-like proteins seem to be conserved in the insect phylum.; PDB: 1KX9_A 1N8U_A 1KX8_A 1K19_A 1N8V_A 2GVS_A 2JNT_A.
Probab=32.24 E-value=31 Score=25.27 Aligned_cols=15 Identities=27% Similarity=0.408 Sum_probs=11.2
Q ss_pred HHHhhhhcCCCCCCC
Q 037020 283 LVHVKTMVDPENFFR 297 (312)
Q Consensus 283 L~~vK~kyDP~~vF~ 297 (312)
..+|.+||||+|-+.
T Consensus 78 w~~l~~KyDp~~~y~ 92 (95)
T PF03392_consen 78 WEELVKKYDPEGKYR 92 (95)
T ss_dssp HHHHHHHHTTT-TTH
T ss_pred HHHHHHHHCCCcchh
Confidence 367889999999764
No 39
>COG1350 Predicted alternative tryptophan synthase beta-subunit (paralog of TrpB) [General function prediction only]
Probab=31.90 E-value=33 Score=31.25 Aligned_cols=22 Identities=23% Similarity=0.416 Sum_probs=18.5
Q ss_pred CCCCCCeeEEeecCCCCceeEEE
Q 037020 6 ESMGEDLFWAIRGGGGPSFGIII 28 (312)
Q Consensus 6 ~~~n~DLFWAlRGgGg~nFGIVT 28 (312)
..+.||.--++.|| |+|||=.|
T Consensus 251 ~~e~PDv~igcvGG-GSNfag~~ 272 (432)
T COG1350 251 AGEDPDVIIGCVGG-GSNFAGLT 272 (432)
T ss_pred cCCCCCEEEEeccC-CCcccccc
Confidence 46789999999999 69998654
No 40
>PF08077 Cm_res_leader: Chloramphenicol resistance gene leader peptide; InterPro: IPR012537 This family consists of chloramphenicol (Cm) resistance gene leader peptides. Inducible resistance to Cm in both Gram-positive and Gram-negative bacteria is controlled by translation attenuation. In translation attenuation, the ribosome-binding-site (RBS) for the resistance determinant is sequestered in a secondary structure domain within the mRNA. Preceding the secondary structure is a short, translated ORF termed the leader. Ribosome stalling in the leader causes the destabilisation of the downstream secondary structure, allowing initiation of translation of the Cm resistance gene [].
Probab=29.48 E-value=65 Score=15.01 Aligned_cols=14 Identities=14% Similarity=0.278 Sum_probs=10.2
Q ss_pred cCCCCceeEEEEEEE
Q 037020 18 GGGGPSFGIIISWKI 32 (312)
Q Consensus 18 GgGg~nFGIVT~~~~ 32 (312)
|- .|.+.|||+-++
T Consensus 3 gv-pgalavvtrrti 16 (17)
T PF08077_consen 3 GV-PGALAVVTRRTI 16 (17)
T ss_pred CC-CceEEEEEEeec
Confidence 44 678899998654
Done!