BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037021
(139 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2WBE|C Chain C, Kinesin-5-Tubulin Complex With Amppnp
Length = 373
Score = 60.1 bits (144), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 47/84 (55%), Gaps = 12/84 (14%)
Query: 20 DVLPPGKMNFVDLTCSIFV------------ENTEVNKSIYTLFNVVYALNANESHVPYW 67
D+L GK+N VDL S V E +N+S+ TL V+ AL HVPY
Sbjct: 255 DMLKIGKLNLVDLAGSENVSKAGNEKGIRVRETVNINQSLLTLGRVITALVDRAPHVPYR 314
Query: 68 ESKLTRMLQESVGCKSKILMLTCL 91
ESKLTR+LQES+G ++K ++ +
Sbjct: 315 ESKLTRLLQESLGGRTKTSIIATI 338
>pdb|2H58|A Chain A, Crystal Structure Of The Kifc3 Motor Domain In Complex
With Adp
Length = 330
Score = 58.2 bits (139), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/97 (39%), Positives = 52/97 (53%), Gaps = 14/97 (14%)
Query: 6 RSHKDLIVNVSHV---SDVLPPGKMNFVDLTCSIFV-----------ENTEVNKSIYTLF 51
RSH LIV V V + + GK+N VDL S V E +NKS+ L
Sbjct: 206 RSHALLIVTVRGVDCSTGLRTTGKLNLVDLAGSERVGKSGAEGSRLREAQHINKSLSALG 265
Query: 52 NVVYALNANESHVPYWESKLTRMLQESVGCKSKILML 88
+V+ AL + + HVP+ SKLT +LQ+S+ SK LM+
Sbjct: 266 DVIAALRSRQGHVPFRNSKLTYLLQDSLSGDSKTLMV 302
>pdb|4A14|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling
Length = 344
Score = 57.4 bits (137), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 55/97 (56%), Gaps = 3/97 (3%)
Query: 3 LPRRSHKDLIVNVSHVSDVLPPGKMNFVDLTCSIFVENTEVNKSIYTLFNVVYALNANE- 61
LPR + L+V+ H D+ ++ T E+ ++N S+ L NV+ AL +
Sbjct: 232 LPRPAPGQLLVSKFHFVDLAGSERVLKTGSTGERLKESIQINSSLLALGNVISALGDPQR 291
Query: 62 --SHVPYWESKLTRMLQESVGCKSKILMLTCLKTKSS 96
SH+PY +SK+TR+L++S+G +K +M+ C+ SS
Sbjct: 292 RGSHIPYRDSKITRILKDSLGGNAKTVMIACVSPSSS 328
>pdb|2VVG|A Chain A, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a
Motor Domain
pdb|2VVG|B Chain B, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a
Motor Domain
Length = 350
Score = 57.0 bits (136), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 38/102 (37%), Positives = 53/102 (51%), Gaps = 16/102 (15%)
Query: 2 DLPRRSHKDLIVNV--SHV---SDVLPPGKMNFVDL-----------TCSIFVENTEVNK 45
D RSH +V + S V +V+ GK+N VDL T VE ++N
Sbjct: 207 DTSSRSHSIFMVRIECSEVIENKEVIRVGKLNLVDLAGSERQSKTGATGETLVEGAKINL 266
Query: 46 SIYTLFNVVYALNANESHVPYWESKLTRMLQESVGCKSKILM 87
S+ L V+ L +H+PY +SKLTR+LQ+S+G SK LM
Sbjct: 267 SLSALGLVISKLVEGATHIPYRDSKLTRLLQDSLGGNSKTLM 308
>pdb|2Y5W|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer
pdb|2Y5W|B Chain B, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer
pdb|2Y65|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|B Chain B, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|C Chain C, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|D Chain D, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
Length = 365
Score = 57.0 bits (136), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 54/100 (54%), Gaps = 15/100 (15%)
Query: 6 RSHKDLIVNVSHVS---DVLPPGKMNFVDLTCS-----------IFVENTEVNKSIYTLF 51
RSH ++NV + GK+ VDL S + E +NKS+ L
Sbjct: 210 RSHSVFLINVKQENLENQKKLSGKLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSLSALG 269
Query: 52 NVVYAL-NANESHVPYWESKLTRMLQESVGCKSKILMLTC 90
NV+ AL + N++H+PY +SKLTR+LQES+G ++ ++ C
Sbjct: 270 NVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIVIC 309
>pdb|2XT3|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling
Length = 344
Score = 54.7 bits (130), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 56/97 (57%), Gaps = 3/97 (3%)
Query: 3 LPRRSHKDLIVNVSHVSDVLPPGKMNFVDLTCSIFVENTEVNKSIYTLFNVVYALNANE- 61
LPR + L+V+ H D+ ++ T + E+ ++N S+ L NV+ AL +
Sbjct: 232 LPRPAPGQLLVSKFHFVDLAGSERVLKTGSTGELRKESIQINSSLLALGNVISALGDPQR 291
Query: 62 --SHVPYWESKLTRMLQESVGCKSKILMLTCLKTKSS 96
S++PY +SK+TR+L++S+G +K +M+ C+ SS
Sbjct: 292 RGSNIPYRDSKITRILKDSLGGNAKTVMIACVSPSSS 328
>pdb|4AQV|C Chain C, Model Of Human Kinesin-5 Motor Domain (3hqd) And Mammalian
Tubulin Heterodimer (1jff) Docked Into The 9.7-angstrom
Cryo-em Map Of Microtubule-bound Kinesin-5 Motor Domain
In The Ampppnp State.
pdb|4AQW|C Chain C, Model Of Human Kinesin-5 Motor Domain (1ii6, 3hqd) And
Mammalian Tubulin Heterodimer (1jff) Docked Into The
9.5- Angstrom Cryo-em Map Of Microtubule-bound Kinesin-5
Motor Domain In The Rigor State
Length = 373
Score = 54.7 bits (130), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 44/78 (56%), Gaps = 11/78 (14%)
Query: 25 GKMNFVDLTCSIFV-----------ENTEVNKSIYTLFNVVYALNANESHVPYWESKLTR 73
GK+N VDL S + E +N+S+ TL V+ AL HVPY ESKLTR
Sbjct: 259 GKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHVPYRESKLTR 318
Query: 74 MLQESVGCKSKILMLTCL 91
+LQ+S+G +++ ++ +
Sbjct: 319 ILQDSLGGRTRTSIIATI 336
>pdb|4AP0|A Chain A, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|B Chain B, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|C Chain C, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|D Chain D, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
Length = 370
Score = 54.3 bits (129), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 44/78 (56%), Gaps = 11/78 (14%)
Query: 25 GKMNFVDLTCSIFV-----------ENTEVNKSIYTLFNVVYALNANESHVPYWESKLTR 73
GK+N VDL S + E +N+S+ TL V+ AL HVPY ESKLTR
Sbjct: 261 GKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHVPYRESKLTR 320
Query: 74 MLQESVGCKSKILMLTCL 91
+LQ+S+G +++ ++ +
Sbjct: 321 ILQDSLGGRTRTSIIATI 338
>pdb|4A1Z|A Chain A, Eg5-1
pdb|4A1Z|B Chain B, Eg5-1
Length = 368
Score = 53.9 bits (128), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 44/78 (56%), Gaps = 11/78 (14%)
Query: 25 GKMNFVDLTCSIFV-----------ENTEVNKSIYTLFNVVYALNANESHVPYWESKLTR 73
GK+N VDL S + E +N+S+ TL V+ AL HVPY ESKLTR
Sbjct: 259 GKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHVPYRESKLTR 318
Query: 74 MLQESVGCKSKILMLTCL 91
+LQ+S+G +++ ++ +
Sbjct: 319 ILQDSLGGRTRTSIIATI 336
>pdb|1II6|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp.
pdb|1II6|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp.
pdb|1YRS|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|1YRS|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2FME|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 (ksp) In
Complex With Mg-adp And (r)-4-(3-hydroxyphenyl)-n,n,7,8-
Tetramethyl-3,4-dihydroisoquinoline-2(1h)-carboxamide
pdb|2FME|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 (ksp) In
Complex With Mg-adp And (r)-4-(3-hydroxyphenyl)-n,n,7,8-
Tetramethyl-3,4-dihydroisoquinoline-2(1h)-carboxamide
pdb|2GM1|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|D Chain D, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|E Chain E, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2G1Q|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 9h
pdb|2G1Q|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 9h
pdb|2PG2|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 15
pdb|2PG2|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 15
pdb|2UYI|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 33
pdb|2UYI|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 33
pdb|2UYM|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 37
pdb|2UYM|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 37
pdb|3K5E|A Chain A, The Structure Of Human Kinesin-Like Motor Protein
Kif11KSPEG5 IN COMPLEX WITH ADP AND ENASTROL.
pdb|3K5E|B Chain B, The Structure Of Human Kinesin-Like Motor Protein
Kif11KSPEG5 IN COMPLEX WITH ADP AND ENASTROL.
pdb|3K3B|A Chain A, Co-crystal Structure Of The Human Kinesin Eg5 With A Novel
Tetrahydro- Beta-carboline
pdb|3K3B|B Chain B, Co-crystal Structure Of The Human Kinesin Eg5 With A Novel
Tetrahydro- Beta-carboline
pdb|3L9H|A Chain A, X-Ray Structure Of Mitotic Kinesin-5 (Ksp, Kif11, Eg5)in
Complex With The Hexahydro-2h-Pyrano[3,2-C]quinoline Emd
534085
pdb|3L9H|B Chain B, X-Ray Structure Of Mitotic Kinesin-5 (Ksp, Kif11, Eg5)in
Complex With The Hexahydro-2h-Pyrano[3,2-C]quinoline Emd
534085
pdb|2X7C|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Enastron
pdb|2X7C|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Enastron
pdb|2X7D|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Dimethylenastron
pdb|2X7D|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Dimethylenastron
pdb|2X7E|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-Fluorastrol
pdb|2X7E|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-Fluorastrol
pdb|2WOG|A Chain A, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2WOG|B Chain B, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2WOG|C Chain C, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2X2R|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2X2R|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2X2R|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2XAE|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|2XAE|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|2XAE|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|4A50|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
2-amino-5-(3-methylphenyl)-5,5-diphenylpentanoic Acid
pdb|4A51|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|D Chain D, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|E Chain E, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|F Chain F, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|G Chain G, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A5Y|A Chain A, Eg5-Inhibitor Complex
pdb|4A5Y|B Chain B, Eg5-Inhibitor Complex
pdb|4A5Y|C Chain C, Eg5-Inhibitor Complex
Length = 368
Score = 53.9 bits (128), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 44/78 (56%), Gaps = 11/78 (14%)
Query: 25 GKMNFVDLTCSIFV-----------ENTEVNKSIYTLFNVVYALNANESHVPYWESKLTR 73
GK+N VDL S + E +N+S+ TL V+ AL HVPY ESKLTR
Sbjct: 259 GKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHVPYRESKLTR 318
Query: 74 MLQESVGCKSKILMLTCL 91
+LQ+S+G +++ ++ +
Sbjct: 319 ILQDSLGGRTRTSIIATI 336
>pdb|1Q0B|A Chain A, Crystal Structure Of The Motor Protein Ksp In Complex With
Adp And Monastrol
pdb|1Q0B|B Chain B, Crystal Structure Of The Motor Protein Ksp In Complex With
Adp And Monastrol
pdb|2FKY|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 13
pdb|2FKY|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 13
pdb|2FL2|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 19
pdb|2FL2|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 19
pdb|2FL6|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 6
pdb|2FL6|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 6
pdb|2IEH|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)- Mon97, A New Monastrol-Based Inhibitor That Binds
As (R)- Enantiomer
pdb|2IEH|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)- Mon97, A New Monastrol-Based Inhibitor That Binds
As (R)- Enantiomer
pdb|2Q2Y|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2Q2Y|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2Q2Z|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 22
pdb|2Q2Z|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 22
pdb|3CJO|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 30
pdb|3CJO|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 30
Length = 367
Score = 53.9 bits (128), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 44/78 (56%), Gaps = 11/78 (14%)
Query: 25 GKMNFVDLTCSIFV-----------ENTEVNKSIYTLFNVVYALNANESHVPYWESKLTR 73
GK+N VDL S + E +N+S+ TL V+ AL HVPY ESKLTR
Sbjct: 258 GKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHVPYRESKLTR 317
Query: 74 MLQESVGCKSKILMLTCL 91
+LQ+S+G +++ ++ +
Sbjct: 318 ILQDSLGGRTRTSIIATI 335
>pdb|4A28|A Chain A, Eg5-2
pdb|4A28|B Chain B, Eg5-2
Length = 368
Score = 53.9 bits (128), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 44/78 (56%), Gaps = 11/78 (14%)
Query: 25 GKMNFVDLTCSIFV-----------ENTEVNKSIYTLFNVVYALNANESHVPYWESKLTR 73
GK+N VDL S + E +N+S+ TL V+ AL HVPY ESKLTR
Sbjct: 259 GKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHVPYRESKLTR 318
Query: 74 MLQESVGCKSKILMLTCL 91
+LQ+S+G +++ ++ +
Sbjct: 319 ILQDSLGGRTRTSIIATI 336
>pdb|3HQD|A Chain A, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And
Mg2+
pdb|3HQD|B Chain B, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And
Mg2+
pdb|3KEN|A Chain A, Human Eg5 In Complex With S-Trityl-L-Cysteine
Length = 369
Score = 53.9 bits (128), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 44/78 (56%), Gaps = 11/78 (14%)
Query: 25 GKMNFVDLTCSIFV-----------ENTEVNKSIYTLFNVVYALNANESHVPYWESKLTR 73
GK+N VDL S + E +N+S+ TL V+ AL HVPY ESKLTR
Sbjct: 259 GKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHVPYRESKLTR 318
Query: 74 MLQESVGCKSKILMLTCL 91
+LQ+S+G +++ ++ +
Sbjct: 319 ILQDSLGGRTRTSIIATI 336
>pdb|3B6U|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3b In Complex With Adp
pdb|3B6U|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3b In Complex With Adp
Length = 372
Score = 53.9 bits (128), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 45/76 (59%), Gaps = 12/76 (15%)
Query: 25 GKMNFVDLTCS-----------IFVENTEVNKSIYTLFNVVYAL-NANESHVPYWESKLT 72
GK+N VDL S E T++N S+ L NV+ AL + +H+PY +SKLT
Sbjct: 252 GKLNLVDLAGSERQAKTGAQGERLKEATKINLSLSALGNVISALVDGKSTHIPYRDSKLT 311
Query: 73 RMLQESVGCKSKILML 88
R+LQ+S+G +K +M+
Sbjct: 312 RLLQDSLGGNAKTVMV 327
>pdb|1X88|A Chain A, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol
pdb|1X88|B Chain B, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol
Length = 359
Score = 53.9 bits (128), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 44/78 (56%), Gaps = 11/78 (14%)
Query: 25 GKMNFVDLTCSIFV-----------ENTEVNKSIYTLFNVVYALNANESHVPYWESKLTR 73
GK+N VDL S + E +N+S+ TL V+ AL HVPY ESKLTR
Sbjct: 250 GKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHVPYRESKLTR 309
Query: 74 MLQESVGCKSKILMLTCL 91
+LQ+S+G +++ ++ +
Sbjct: 310 ILQDSLGGRTRTSIIATI 327
>pdb|3ZCW|A Chain A, Eg5 - New Allosteric Binding Site
Length = 348
Score = 53.9 bits (128), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 45/82 (54%), Gaps = 11/82 (13%)
Query: 25 GKMNFVDLTCSIFV-----------ENTEVNKSIYTLFNVVYALNANESHVPYWESKLTR 73
GK+N VDL S + E +N+S+ TL V+ AL HVPY ESKLTR
Sbjct: 244 GKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHVPYRESKLTR 303
Query: 74 MLQESVGCKSKILMLTCLKTKS 95
+LQ+S+G +++ ++ + S
Sbjct: 304 ILQDSLGGRTRTSIIATISPAS 325
>pdb|3B6V|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3c In Complex With Adp
pdb|3B6V|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3c In Complex With Adp
Length = 395
Score = 53.5 bits (127), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 39/58 (67%), Gaps = 1/58 (1%)
Query: 39 ENTEVNKSIYTLFNVVYALNANES-HVPYWESKLTRMLQESVGCKSKILMLTCLKTKS 95
E +++N S+ L NV+ AL N S H+PY +SKLTR+LQ+S+G +K +M+ L S
Sbjct: 301 EASKINLSLSALGNVIAALAGNRSTHIPYRDSKLTRLLQDSLGGNAKTIMVATLGPAS 358
>pdb|3BFN|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 22
Length = 388
Score = 52.8 bits (125), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 49/99 (49%), Gaps = 15/99 (15%)
Query: 6 RSHKDLIVNVSHVSDVLP----PGKMNFVDLTCS-----------IFVENTEVNKSIYTL 50
RSH L+V V + P GK+ +DL S E+ +N S++ L
Sbjct: 224 RSHAVLLVKVDQRERLAPFRQREGKLYLIDLAGSEDNRRTGNKGLRLKESGAINTSLFVL 283
Query: 51 FNVVYALNANESHVPYWESKLTRMLQESVGCKSKILMLT 89
VV ALN VPY +SKLTR+LQ+S+G + +++
Sbjct: 284 GKVVDALNQGLPRVPYRDSKLTRLLQDSLGGSAHSILIA 322
>pdb|1BG2|A Chain A, Human Ubiquitous Kinesin Motor Domain
pdb|2P4N|K Chain K, Human Monomeric Kinesin (1bg2) And Bovine Tubulin (1jff)
Docked Into The 9-Angstrom Cryo-Em Map Of
Nucleotide-Free Kinesin Complexed To The Microtubule
Length = 325
Score = 52.8 bits (125), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 51/99 (51%), Gaps = 14/99 (14%)
Query: 6 RSHKDLIVNVSH---VSDVLPPGKMNFVDLTCS-----------IFVENTEVNKSIYTLF 51
RSH ++NV ++ GK+ VDL S + E +NKS+ L
Sbjct: 203 RSHSIFLINVKQENTQTEQKLSGKLYLVDLAGSEKVSKTGAEGAVLDEAKNINKSLSALG 262
Query: 52 NVVYALNANESHVPYWESKLTRMLQESVGCKSKILMLTC 90
NV+ AL ++VPY +SK+TR+LQ+S+G + ++ C
Sbjct: 263 NVISALAEGSTYVPYRDSKMTRILQDSLGGNCRTTIVIC 301
>pdb|1MKJ|A Chain A, Human Kinesin Motor Domain With Docked Neck Linker
Length = 349
Score = 52.4 bits (124), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 51/99 (51%), Gaps = 14/99 (14%)
Query: 6 RSHKDLIVNVSH---VSDVLPPGKMNFVDLTCS-----------IFVENTEVNKSIYTLF 51
RSH ++NV ++ GK+ VDL S + E +NKS+ L
Sbjct: 203 RSHSIFLINVKQENTQTEQKLSGKLYLVDLAGSEKVSKTGAEGAVLDEAKNINKSLSALG 262
Query: 52 NVVYALNANESHVPYWESKLTRMLQESVGCKSKILMLTC 90
NV+ AL ++VPY +SK+TR+LQ+S+G + ++ C
Sbjct: 263 NVISALAEGSTYVPYRDSKMTRILQDSLGGNCRTTIVIC 301
>pdb|4ATX|C Chain C, Rigor Kinesin Motor Domain With An Ordered Neck-Linker,
Docked On Tubulin Dimer, Modelled Into The 8a Cryo-Em
Map Of Doublecortin-Microtubules Decorated With Kinesin
Length = 340
Score = 52.4 bits (124), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 51/99 (51%), Gaps = 14/99 (14%)
Query: 6 RSHKDLIVNVSH---VSDVLPPGKMNFVDLTCS-----------IFVENTEVNKSIYTLF 51
RSH ++NV ++ GK+ VDL S + E +NKS+ L
Sbjct: 203 RSHSIFLINVKQENTQTEQKLSGKLYLVDLAGSEKVSKTGAEGAVLDEAKNINKSLSALG 262
Query: 52 NVVYALNANESHVPYWESKLTRMLQESVGCKSKILMLTC 90
NV+ AL ++VPY +SK+TR+LQ+S+G + ++ C
Sbjct: 263 NVISALAEGSTYVPYRDSKMTRILQDSLGGNCRTTIVIC 301
>pdb|3LRE|A Chain A, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain
pdb|3LRE|B Chain B, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain
Length = 355
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 45/81 (55%), Gaps = 14/81 (17%)
Query: 25 GKMNFVDLTCS-----------IFVENTEVNKSIYTLFNVVYALNANE---SHVPYWESK 70
KM+ +DL S FVE T +N+S+ L NV+ AL ++ H+PY SK
Sbjct: 252 AKMSLIDLAGSERASTSGAKGTRFVEGTNINRSLLALGNVINALADSKRKNQHIPYRNSK 311
Query: 71 LTRMLQESVGCKSKILMLTCL 91
LTR+L++S+G + +M+ +
Sbjct: 312 LTRLLKDSLGGNCQTIMIAAV 332
>pdb|1GOJ|A Chain A, Structure Of A Fast Kinesin: Implications For Atpase
Mechanism And Interactions With Microtubules
Length = 355
Score = 50.4 bits (119), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 53/101 (52%), Gaps = 16/101 (15%)
Query: 6 RSHKDLIVNVSH---VSDVLPPGKMNFVDLTCSIFV-----------ENTEVNKSIYTLF 51
RSH ++ ++ + G++ VDL S V E ++NKS+ L
Sbjct: 207 RSHSIFVITITQKNVETGSAKSGQLFLVDLAGSEKVGKTGASGQTLEEAKKINKSLSALG 266
Query: 52 NVVYAL-NANESHVPYWESKLTRMLQESVGCKSK-ILMLTC 90
V+ AL + SHVPY +SKLTR+LQES+G S+ L++ C
Sbjct: 267 MVINALTDGKSSHVPYRDSKLTRILQESLGGNSRTTLIINC 307
>pdb|1SDM|A Chain A, Crystal Structure Of Kinesin-Like Calmodulin Binding
Protein
pdb|3CNZ|A Chain A, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3CNZ|B Chain B, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3COB|A Chain A, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3COB|C Chain C, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
Length = 369
Score = 50.1 bits (118), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 52/99 (52%), Gaps = 18/99 (18%)
Query: 6 RSHKDLIVNV-----SHVSDVLPPGKMNFVDLTCSIFV-----------ENTEVNKSIYT 49
RSH LIV+V + + + GK++FVDL S V E +NKS+
Sbjct: 205 RSH--LIVSVIIESTNLQTQAIARGKLSFVDLAGSERVKKSGSAGNQLKEAQSINKSLSA 262
Query: 50 LFNVVYALNANESHVPYWESKLTRMLQESVGCKSKILML 88
L +V+ AL++ H+PY KLT ++ +S+G +K LM
Sbjct: 263 LGDVISALSSGNQHIPYRNHKLTMLMSDSLGGNAKTLMF 301
>pdb|2NCD|A Chain A, Ncd (Non-Claret Disjunctional) Dimer From D. Melanogaster
Length = 420
Score = 50.1 bits (118), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 38/71 (53%), Gaps = 7/71 (9%)
Query: 25 GKMNFVDL-------TCSIFVENTEVNKSIYTLFNVVYALNANESHVPYWESKLTRMLQE 77
G +N VDL T + E +N+S+ L NV+ AL + H+PY SKLT +L
Sbjct: 294 GSINLVDLAGSESPKTSTRMTETKNINRSLSELTNVILALLQKQDHIPYRNSKLTHLLMP 353
Query: 78 SVGCKSKILML 88
S+G SK LM
Sbjct: 354 SLGGNSKTLMF 364
>pdb|2REP|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member C1
Length = 376
Score = 50.1 bits (118), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 33/50 (66%)
Query: 39 ENTEVNKSIYTLFNVVYALNANESHVPYWESKLTRMLQESVGCKSKILML 88
E +N S+ TL V+ AL+ ESHVPY SKLT +LQ S+G +K+LM
Sbjct: 301 ETQAINSSLSTLGLVIMALSNKESHVPYRNSKLTYLLQNSLGGSAKMLMF 350
>pdb|3U06|A Chain A, Crystal Structure Of The Kinesin-14 Ncdg347d
pdb|3U06|B Chain B, Crystal Structure Of The Kinesin-14 Ncdg347d
Length = 412
Score = 50.1 bits (118), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 38/71 (53%), Gaps = 7/71 (9%)
Query: 25 GKMNFVDL-------TCSIFVENTEVNKSIYTLFNVVYALNANESHVPYWESKLTRMLQE 77
G +N VDL T + E +N+S+ L NV+ AL + H+PY SKLT +L
Sbjct: 286 GSINLVDLAGSESPKTSTRMTETKNINRSLSELTNVILALLQKQDHIPYRNSKLTHLLMP 345
Query: 78 SVGCKSKILML 88
S+G SK LM
Sbjct: 346 SLGGNSKTLMF 356
>pdb|3L1C|A Chain A, Kinesin-14 Protein Ncd, T436s Mutant
pdb|3L1C|B Chain B, Kinesin-14 Protein Ncd, T436s Mutant
Length = 383
Score = 49.7 bits (117), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 38/71 (53%), Gaps = 7/71 (9%)
Query: 25 GKMNFVDL-------TCSIFVENTEVNKSIYTLFNVVYALNANESHVPYWESKLTRMLQE 77
G +N VDL T + E +N+S+ L NV+ AL + H+PY SKLT +L
Sbjct: 283 GSINLVDLAGSESPKTSTRMTETKNINRSLSELTNVILALLQKQDHIPYRNSKLTHLLMP 342
Query: 78 SVGCKSKILML 88
S+G SK LM
Sbjct: 343 SLGGNSKTLMF 353
>pdb|1CZ7|A Chain A, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|B Chain B, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|C Chain C, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|D Chain D, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
Length = 406
Score = 49.7 bits (117), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 38/71 (53%), Gaps = 7/71 (9%)
Query: 25 GKMNFVDL-------TCSIFVENTEVNKSIYTLFNVVYALNANESHVPYWESKLTRMLQE 77
G +N VDL T + E +N+S+ L NV+ AL + H+PY SKLT +L
Sbjct: 280 GSINLVDLAGSESPKTSTRMTETKNINRSLSELTNVILALLQKQDHIPYRNSKLTHLLMP 339
Query: 78 SVGCKSKILML 88
S+G SK LM
Sbjct: 340 SLGGNSKTLMF 350
>pdb|3H4S|A Chain A, Structure Of The Complex Of A Mitotic Kinesin With Its
Calcium Binding Regulator
Length = 386
Score = 49.3 bits (116), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 41/75 (54%), Gaps = 11/75 (14%)
Query: 25 GKMNFVDLTCSIFV-----------ENTEVNKSIYTLFNVVYALNANESHVPYWESKLTR 73
GK++FVDL S V E +NKS+ L +V+ AL++ H+PY KLT
Sbjct: 235 GKLSFVDLAGSERVKKSGSAGNQLKEAQSINKSLSALGDVIGALSSGNQHIPYRNHKLTM 294
Query: 74 MLQESVGCKSKILML 88
++ +S+G +K LM
Sbjct: 295 LMSDSLGGNAKTLMF 309
>pdb|4H1G|A Chain A, Structure Of Candida Albicans Kar3 Motor Domain Fused To
Maltose- Binding Protein
Length = 715
Score = 49.3 bits (116), Expect = 7e-07, Method: Composition-based stats.
Identities = 34/102 (33%), Positives = 53/102 (51%), Gaps = 15/102 (14%)
Query: 2 DLPRRSHKDLIVNVSHVSDVLPP---GKMNFVDLTCSIFVENTE-----------VNKSI 47
D RSH I+++ + + G +N +DL S + N+ +NKS+
Sbjct: 584 DHSSRSHSIFIIDLQGYNSLTKESSYGTLNLIDLAGSERLNNSRAEGDRLKETQAINKSL 643
Query: 48 YTLFNVVYALNANE-SHVPYWESKLTRMLQESVGCKSKILML 88
L +V+++LN + SHVPY SKLT +L+ S+G SK LM
Sbjct: 644 SCLGDVIHSLNLKDGSHVPYRNSKLTYLLKHSLGGNSKTLMF 685
>pdb|3T0Q|A Chain A, Motor Domain Structure Of The Kar3-Like Kinesin From
Ashbya Gossypii
Length = 349
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 52/101 (51%), Gaps = 19/101 (18%)
Query: 6 RSHKDLIVNVS----HVSDVLPPGKMNFVDLTCSIFV-----------ENTEVNKSIYTL 50
RSH +V+++ H + GK+N VDL S + E +NKS+ L
Sbjct: 219 RSHSVFMVHINGRNLHTGET-SQGKLNLVDLAGSERINSSAVTGERLRETQNINKSLSCL 277
Query: 51 FNVVYALN---ANESHVPYWESKLTRMLQESVGCKSKILML 88
+V+YALN A + ++P+ SKLT +LQ S+ SK LM
Sbjct: 278 GDVIYALNTPDAGKRYIPFRNSKLTYLLQYSLVGDSKTLMF 318
>pdb|1N6M|A Chain A, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL
Structure Of The Kinesin Motor Protein, Ncd
pdb|1N6M|B Chain B, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL
Structure Of The Kinesin Motor Protein, Ncd
Length = 409
Score = 47.4 bits (111), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 37/71 (52%), Gaps = 7/71 (9%)
Query: 25 GKMNFVDL-------TCSIFVENTEVNKSIYTLFNVVYALNANESHVPYWESKLTRMLQE 77
G +N VDL T + E + +S+ L NV+ AL + H+PY SKLT +L
Sbjct: 283 GSINLVDLAGSESPKTSTRMTETKNIKRSLSELTNVILALLQKQDHIPYRNSKLTHLLMP 342
Query: 78 SVGCKSKILML 88
S+G SK LM
Sbjct: 343 SLGGNSKTLMF 353
>pdb|2HEH|A Chain A, Crystal Structure Of The Kif2c Motor Domain (Casp Target)
Length = 387
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 35/53 (66%), Gaps = 1/53 (1%)
Query: 38 VENTEVNKSIYTLFNVVYALNANESHVPYWESKLTRMLQES-VGCKSKILMLT 89
+E E+NKS+ L + AL N++H P+ ESKLT++L++S +G S+ M+
Sbjct: 305 MEGAEINKSLLALKECIRALGQNKAHTPFRESKLTQVLRDSFIGENSRTCMIA 357
>pdb|3EDL|D Chain D, Kinesin13-Microtubule Ring Complex
Length = 331
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 35/53 (66%), Gaps = 1/53 (1%)
Query: 38 VENTEVNKSIYTLFNVVYALNANESHVPYWESKLTRMLQES-VGCKSKILMLT 89
+E E+NKS+ L + AL N++H P+ ESKLT++L++S +G S+ M+
Sbjct: 253 MEGAEINKSLLALKECIRALGQNKAHTPFRESKLTQVLRDSFIGENSRTCMIA 305
>pdb|3KIN|B Chain B, Kinesin (Dimeric) From Rattus Norvegicus
pdb|3KIN|D Chain D, Kinesin (Dimeric) From Rattus Norvegicus
Length = 117
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 33/48 (68%), Gaps = 1/48 (2%)
Query: 44 NKSIYTLFNVVYAL-NANESHVPYWESKLTRMLQESVGCKSKILMLTC 90
NKS+ L NV+ AL ++HVPY +SK+TR+LQ+S+G + ++ C
Sbjct: 1 NKSLSALGNVISALAEGTKTHVPYRDSKMTRILQDSLGGNCRTTIVIC 48
>pdb|1V8J|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of
The Microtubule Destabilizer Kif2c Complexed With Mg-adp
pdb|1V8K|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of
The Microtubule Destabilizer Kif2c Complexed With
Mg-Amppnp
Length = 410
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 35/53 (66%), Gaps = 1/53 (1%)
Query: 38 VENTEVNKSIYTLFNVVYALNANESHVPYWESKLTRMLQES-VGCKSKILMLT 89
+E E+NKS+ L + AL N++H P+ ESKLT++L++S +G S+ M+
Sbjct: 325 MEGAEINKSLLALKECIRALGQNKAHTPFRESKLTQVLRDSFIGENSRTCMIA 377
>pdb|4ETP|A Chain A, C-Terminal Motor And Motor Homology Domain Of Kar3vik1
Fused To A Synthetic Heterodimeric Coiled Coil
Length = 403
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 52/108 (48%), Gaps = 17/108 (15%)
Query: 6 RSHKDLIVNVSHV---SDVLPPGKMNFVDLTCSIFV-----------ENTEVNKSIYTLF 51
RSH I+++S + G +N VDL S + E +NKS+ L
Sbjct: 272 RSHSIFIIHLSGSNAKTGAHSYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSALG 331
Query: 52 NVVYALNANES---HVPYWESKLTRMLQESVGCKSKILMLTCLKTKSS 96
+V++AL +S H+P+ SKLT +LQ S+ SK LM + SS
Sbjct: 332 DVIHALGQPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSS 379
>pdb|1F9W|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
pdb|1F9W|B Chain B, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 43.9 bits (102), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 52/108 (48%), Gaps = 17/108 (15%)
Query: 6 RSHKDLIVNVSHV---SDVLPPGKMNFVDLTCSIFV-----------ENTEVNKSIYTLF 51
RSH I+++S + G +N VDL S + E +NKS+ L
Sbjct: 216 RSHSIFIIHLSGSNAKTGAHSYGTLNLVDLAGSARINVSQVVGDRLRETQNINKSLSCLG 275
Query: 52 NVVYALNANES---HVPYWESKLTRMLQESVGCKSKILMLTCLKTKSS 96
+V++AL +S H+P+ SKLT +LQ S+ SK LM + SS
Sbjct: 276 DVIHALGQPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSS 323
>pdb|2KIN|B Chain B, Kinesin (Monomeric) From Rattus Norvegicus
Length = 100
Score = 43.9 bits (102), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 35/48 (72%), Gaps = 3/48 (6%)
Query: 43 VNKSIYTLFNVVYAL-NANESHVPYWESKLTRMLQESV--GCKSKILM 87
+NKS+ L NV+ AL ++HVPY +SK+TR+LQ+S+ C++ I++
Sbjct: 4 INKSLSALGNVISALAEGTKTHVPYRDSKMTRILQDSLDGNCRTTIVI 51
>pdb|1RY6|A Chain A, Crystal Structure Of Internal Kinesin Motor Domain
Length = 360
Score = 43.9 bits (102), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 53/99 (53%), Gaps = 12/99 (12%)
Query: 2 DLPRRSHKDLIVNVSHVSDVLPPGKMNFVDLTCS------------IFVENTEVNKSIYT 49
D RSH L +++ ++ GK+ F+DL S + +N+S+
Sbjct: 207 DESSRSHAILNIDLKDINKNTSLGKIAFIDLAGSERGADTVSQNKQTQTDGANINRSLLA 266
Query: 50 LFNVVYALNANESHVPYWESKLTRMLQESVGCKSKILML 88
L + A++++++H+P+ +S+LT++L++ KSK +M+
Sbjct: 267 LKECIRAMDSDKNHIPFRDSELTKVLRDIFVGKSKSIMI 305
>pdb|3KAR|A Chain A, The Motor Domain Of Kinesin-Like Protein Kar3, A
Saccharomyces Cerevisiae Kinesin-Related Protein
Length = 346
Score = 43.1 bits (100), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 52/108 (48%), Gaps = 17/108 (15%)
Query: 6 RSHKDLIVNVSHV---SDVLPPGKMNFVDLTCSIFV-----------ENTEVNKSIYTLF 51
RSH I+++S + G +N VDL S + E +NKS+ L
Sbjct: 215 RSHSIFIIHLSGSNAKTGAHSYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSCLG 274
Query: 52 NVVYALNANES---HVPYWESKLTRMLQESVGCKSKILMLTCLKTKSS 96
+V++AL +S H+P+ SKLT +LQ S+ SK LM + SS
Sbjct: 275 DVIHALGQPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSS 322
>pdb|1F9T|A Chain A, Crystal Structures Of Kinesin Mutants Reveal A Signalling
Pathway For Activation Of The Motor Atpase
Length = 358
Score = 43.1 bits (100), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 52/108 (48%), Gaps = 17/108 (15%)
Query: 6 RSHKDLIVNVSHV---SDVLPPGKMNFVDLTCSIFV-----------ENTEVNKSIYTLF 51
RSH I+++S + G +N VDL S + E +NKS+ L
Sbjct: 227 RSHSIFIIHLSGSNAKTGAHSYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSCLG 286
Query: 52 NVVYALNANES---HVPYWESKLTRMLQESVGCKSKILMLTCLKTKSS 96
+V++AL +S H+P+ SKLT +LQ S+ SK LM + SS
Sbjct: 287 DVIHALGQPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSS 334
>pdb|1F9V|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 42.7 bits (99), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 43/86 (50%), Gaps = 14/86 (16%)
Query: 25 GKMNFVDLTCSIFV-----------ENTEVNKSIYTLFNVVYALNANES---HVPYWESK 70
G +N VDL S + E +NKS+ L +V++AL +S H+P+ SK
Sbjct: 238 GTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPDSTKRHIPFRNSK 297
Query: 71 LTRMLQESVGCKSKILMLTCLKTKSS 96
LT +LQ S+ SK LM + SS
Sbjct: 298 LTYLLQYSLTGDSKTLMFVNISPSSS 323
>pdb|4GKR|A Chain A, Structure Of The C-Terminal Motor Domain Of Kar3 From
Candida Glabrata
pdb|4GKR|B Chain B, Structure Of The C-Terminal Motor Domain Of Kar3 From
Candida Glabrata
Length = 371
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 39/78 (50%), Gaps = 14/78 (17%)
Query: 25 GKMNFVDLTCS-----------IFVENTEVNKSIYTLFNVVYALN---ANESHVPYWESK 70
G +N VDL S E +NKS+ L +V++ALN + H+P+ SK
Sbjct: 262 GILNLVDLAGSERLNSSMVVGERLRETQSINKSLSCLGDVIHALNSPDGQKRHIPFRNSK 321
Query: 71 LTRMLQESVGCKSKILML 88
LT +LQ S+ SK LM
Sbjct: 322 LTYLLQYSLIGSSKTLMF 339
>pdb|1F9U|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 51/108 (47%), Gaps = 17/108 (15%)
Query: 6 RSHKDLIVNVSHV---SDVLPPGKMNFVDLTCSIFV-----------ENTEVNKSIYTLF 51
RSH I+++S + G +N VDL S + E + KS+ L
Sbjct: 216 RSHSIFIIHLSGSNAKTGAHSYGTLNLVDLAGSERINVSQVVGDRLRETQNIKKSLSCLG 275
Query: 52 NVVYALNANES---HVPYWESKLTRMLQESVGCKSKILMLTCLKTKSS 96
+V++AL +S H+P+ SKLT +LQ S+ SK LM + SS
Sbjct: 276 DVIHALGQPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSS 323
>pdb|2GRY|A Chain A, Crystal Structure Of The Human Kif2 Motor Domain In
Complex With Adp
Length = 420
Score = 39.7 bits (91), Expect = 5e-04, Method: Composition-based stats.
Identities = 20/55 (36%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 38 VENTEVNKSIYTLFNVVYALNANESHVPYWESKLTRMLQES-VGCKSKILMLTCL 91
+E E+NKS+ L + AL N+ H P+ SKLT++L++S +G S+ M+ +
Sbjct: 343 LEGAEINKSLLALKECIRALGRNKPHTPFRASKLTQVLRDSFIGENSRTCMIATI 397
>pdb|3DC4|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Nod In Complex With Adp
pdb|3DCB|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Nod In Complex With Amppnp
pdb|3DCO|N Chain N, Drosophila Nod (3dc4) And Bovine Tubulin (1jff) Docked
Into The 11-Angstrom Cryo-Em Map Of Nucleotide-Free Nod
Complexed To The Microtubule
Length = 344
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 46/97 (47%), Gaps = 14/97 (14%)
Query: 6 RSHKDLIVNVSHVSDVLPPGKMNFVDLTCSIFV-----------ENTEVNKSIYTLFNVV 54
RSH IV + HV +MN VDL S V E +N + ++ VV
Sbjct: 219 RSHA--IVTI-HVKSKTHHSRMNIVDLAGSEGVRRTGHEGVARQEGVNINLGLLSINKVV 275
Query: 55 YALNANESHVPYWESKLTRMLQESVGCKSKILMLTCL 91
++ A + +PY +S LT +LQ S+ +S + L C+
Sbjct: 276 MSMAAGHTVIPYRDSVLTTVLQASLTAQSYLTFLACI 312
>pdb|3PXN|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Kin10NOD IN Complex With Divalent Manganese And Adp
Length = 344
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 46/97 (47%), Gaps = 14/97 (14%)
Query: 6 RSHKDLIVNVSHVSDVLPPGKMNFVDLTCSIFV-----------ENTEVNKSIYTLFNVV 54
RSH IV + HV +MN VDL S V E +N + ++ VV
Sbjct: 219 RSHA--IVTI-HVKSKTHHSRMNIVDLAGSEGVRRTGHEGVARQEGVNINLGLLSINKVV 275
Query: 55 YALNANESHVPYWESKLTRMLQESVGCKSKILMLTCL 91
++ A + +PY +S LT +LQ S+ +S + L C+
Sbjct: 276 MSMAAGHTVIPYRDSVLTTVLQASLTAQSYLTFLACI 312
>pdb|3NWN|A Chain A, Crystal Structure Of The Human Kif9 Motor Domain In
Complex With Adp
Length = 359
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 43/83 (51%), Gaps = 12/83 (14%)
Query: 26 KMNFVDLTCS-----------IFVENTEVNKSIYTLFNVVYAL-NANESHVPYWESKLTR 73
K+N VDL S + E T +NKS+ L + AL + H+P+ + KLT
Sbjct: 259 KINLVDLAGSERLGKSGSEGQVLKEATYINKSLSFLEQAIIALGDQKRDHIPFRQCKLTH 318
Query: 74 MLQESVGCKSKILMLTCLKTKSS 96
L++S+G ++++T + +++
Sbjct: 319 ALKDSLGGNCNMVLVTNIYGEAA 341
>pdb|3GBJ|A Chain A, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
pdb|3GBJ|B Chain B, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
pdb|3GBJ|C Chain C, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
Length = 354
Score = 37.0 bits (84), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 44/85 (51%), Gaps = 19/85 (22%)
Query: 25 GKMNFVDLTCS-----------IFVENTEVNKSIYTLFNVVYALNANES-------HVPY 66
GK++ VDL S E + +NKS+ TL V+ AL A++S VPY
Sbjct: 244 GKLSLVDLAGSERATKTGAAGDRLKEGSNINKSLTTLGLVISAL-ADQSAGKNKNKFVPY 302
Query: 67 WESKLTRMLQESVGCKSKILMLTCL 91
+S LT +L++S+G SK M+ +
Sbjct: 303 RDSVLTWLLKDSLGGNSKTAMVATV 327
>pdb|1T5C|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinetochore
Protein Cenp-E
pdb|1T5C|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinetochore
Protein Cenp-E
Length = 349
Score = 34.3 bits (77), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Query: 39 ENTEVNKSIYTLFNVVYALNANE--SHVPYWESKLTRMLQESVGCKSKILML 88
E +N+S++ L V+ L+ + + Y +SKLTR+LQ S+G +K ++
Sbjct: 253 EGCNINRSLFILGQVIKKLSDGQVGGFINYRDSKLTRILQNSLGGNAKTRII 304
>pdb|2OWM|A Chain A, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|B Chain B, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|C Chain C, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|D Chain D, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
Length = 443
Score = 32.0 bits (71), Expect = 0.099, Method: Composition-based stats.
Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 22/75 (29%)
Query: 39 ENTEVNKSIYTLFNVVYALNANESH----------------------VPYWESKLTRMLQ 76
E + +NKS+ TL V+ AL +S VPY +S LT +L+
Sbjct: 318 EGSNINKSLTTLGRVIAALADPKSSASRPSSPVKSGRGRTPGPANSVVPYRDSVLTWLLK 377
Query: 77 ESVGCKSKILMLTCL 91
+S+G SK M+ C+
Sbjct: 378 DSLGGNSKTAMIACI 392
>pdb|2WXF|A Chain A, The Crystal Structure Of The Murine Class Ia Pi 3-Kinase
P110delta In Complex With Pik-39.
pdb|2WXG|A Chain A, The Crystal Structure Of The Murine Class Ia Pi 3-Kinase
P110delta In Complex With Sw13.
pdb|2WXH|A Chain A, The Crystal Structure Of The Murine Class Ia Pi 3-Kinase
P110delta In Complex With Sw14.
pdb|2WXI|A Chain A, The Crystal Structure Of The Murine Class Ia Pi 3-kinase
P110delta In Complex With Sw30.
pdb|2WXJ|A Chain A, The Crystal Structure Of The Murine Class Ia Pi 3-Kinase
P110delta In Complex With Ink654.
pdb|2WXK|A Chain A, The Crystal Structure Of The Murine Class Ia Pi 3-Kinase
P110delta In Complex With Ink666.
pdb|2WXL|A Chain A, The Crystal Structure Of The Murine Class Ia Pi 3-Kinase
P110delta In Complex With Zstk474.
pdb|2WXM|A Chain A, The Crystal Structure Of The Murine Class Ia Pi 3-Kinase
P110delta In Complex With Dl06.
pdb|2WXN|A Chain A, The Crystal Structure Of The Murine Class Ia Pi 3-kinase
P110delta In Complex With Dl07.
pdb|2WXO|A Chain A, The Crystal Structure Of The Murine Class Ia Pi 3-Kinase
P110delta In Complex With As5.
pdb|2WXP|A Chain A, The Crystal Structure Of The Murine Class Ia Pi 3-Kinase
P110delta In Complex With Gdc-0941.
pdb|2WXQ|A Chain A, The Crystal Structure Of The Murine Class Ia Pi 3-Kinase
P110delta In Complex With As15.
pdb|2WXR|A Chain A, The Crystal Structure Of The Murine Class Ia Pi 3-Kinase
P110delta.
pdb|2X38|A Chain A, The Crystal Structure Of The Murine Class Ia Pi 3-Kinase
P110delta In Complex With Ic87114
Length = 940
Score = 26.6 bits (57), Expect = 4.8, Method: Composition-based stats.
Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 2/73 (2%)
Query: 60 NESHVPYWESKLTRMLQESVGCKSKILMLTCLKTKSSASSMLLSFHKNQSPKSVSTTKTQ 119
+E HVP + +++ C+ + L + A S L + + S TTK Q
Sbjct: 549 SEMHVPSVALRFGLIMEAY--CRGSTHHMKVLMKQGEALSKLKALNDFVKVSSQKTTKPQ 606
Query: 120 TESQMHFSTKKAT 132
T+ MH ++ T
Sbjct: 607 TKEMMHMCMRQET 619
>pdb|4DY0|A Chain A, Crystal Structure Of Native Protease Nexin-1 With Heparin
pdb|4DY0|B Chain B, Crystal Structure Of Native Protease Nexin-1 With Heparin
pdb|4DY7|C Chain C, Crystal Structures Of Protease Nexin-1 In Complex With
S195a Thrombin
pdb|4DY7|F Chain F, Crystal Structures Of Protease Nexin-1 In Complex With
S195a Thrombin
Length = 379
Score = 26.2 bits (56), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 44 NKSIYTLFNVVYALNANESHVPY 66
NK I T+ N V+ NA+E VP+
Sbjct: 85 NKDIVTVANAVFVKNASEIEVPF 107
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.125 0.349
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,250,525
Number of Sequences: 62578
Number of extensions: 98148
Number of successful extensions: 261
Number of sequences better than 100.0: 60
Number of HSP's better than 100.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 197
Number of HSP's gapped (non-prelim): 62
length of query: 139
length of database: 14,973,337
effective HSP length: 89
effective length of query: 50
effective length of database: 9,403,895
effective search space: 470194750
effective search space used: 470194750
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 46 (22.3 bits)