BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037022
(112 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3N2Z|B Chain B, The Structure Of Human Prolylcarboxypeptidase At 2.80
Angstroms Resolution
Length = 446
Score = 105 bits (262), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 44/98 (44%), Positives = 70/98 (71%), Gaps = 1/98 (1%)
Query: 16 KPLADYAGILLHIKKNL-SAEMSPIIVVGASYGGMLAAWFRLKYPHIALGAVASSAPILY 74
+ LAD+A ++ H+K+ + AE P+I +G SYGGMLAAWFR+KYPH+ +GA+A+SAPI
Sbjct: 104 QALADFAELIKHLKRTIPGAENQPVIAIGGSYGGMLAAWFRMKYPHMVVGALAASAPIWQ 163
Query: 75 FDNITPSNAYYDLVSKDFREGSESCYKTIKQSWAEIDK 112
F+++ P + +V+ DFR+ C ++I +SW I++
Sbjct: 164 FEDLVPCGVFMKIVTTDFRKSGPHCSESIHRSWDAINR 201
>pdb|3JYH|A Chain A, Human Dipeptidyl Peptidase Dpp7
pdb|3JYH|B Chain B, Human Dipeptidyl Peptidase Dpp7
pdb|3JYH|C Chain C, Human Dipeptidyl Peptidase Dpp7
pdb|3JYH|D Chain D, Human Dipeptidyl Peptidase Dpp7
pdb|3N0T|A Chain A, Human Dipeptidil Peptidase Dpp7 Complexed With Inhibitor
Gsk237826a
pdb|3N0T|B Chain B, Human Dipeptidil Peptidase Dpp7 Complexed With Inhibitor
Gsk237826a
pdb|3N0T|C Chain C, Human Dipeptidil Peptidase Dpp7 Complexed With Inhibitor
Gsk237826a
pdb|3N0T|D Chain D, Human Dipeptidil Peptidase Dpp7 Complexed With Inhibitor
Gsk237826a
Length = 469
Score = 87.4 bits (215), Expect = 2e-18, Method: Composition-based stats.
Identities = 38/101 (37%), Positives = 68/101 (67%)
Query: 10 DISTLLKPLADYAGILLHIKKNLSAEMSPIIVVGASYGGMLAAWFRLKYPHIALGAVASS 69
++ T+ + LAD+A +L ++++L A+ +P I G SYGGML+A+ R+KYPH+ GA+A+S
Sbjct: 104 ELLTVEQALADFAELLRALRRDLGAQDAPAIAFGGSYGGMLSAYLRMKYPHLVAGALAAS 163
Query: 70 APILYFDNITPSNAYYDLVSKDFREGSESCYKTIKQSWAEI 110
AP+L + SN ++ V+ DF S C + +++++ +I
Sbjct: 164 APVLAVAGLGDSNQFFRDVTADFEGQSPKCTQGVREAFRQI 204
>pdb|4EBB|A Chain A, Structure Of Dpp2
pdb|4EBB|B Chain B, Structure Of Dpp2
Length = 472
Score = 83.6 bits (205), Expect = 3e-17, Method: Composition-based stats.
Identities = 37/101 (36%), Positives = 66/101 (65%)
Query: 10 DISTLLKPLADYAGILLHIKKNLSAEMSPIIVVGASYGGMLAAWFRLKYPHIALGAVASS 69
++ T+ + LAD+A +L ++++L A+ +P I G SYGG L+A+ R KYPH+ GA+A+S
Sbjct: 101 ELLTVEQALADFAELLRALRRDLGAQDAPAIAFGGSYGGXLSAYLRXKYPHLVAGALAAS 160
Query: 70 APILYFDNITPSNAYYDLVSKDFREGSESCYKTIKQSWAEI 110
AP+L + SN ++ V+ DF S C + +++++ +I
Sbjct: 161 APVLAVAGLGDSNQFFRDVTADFEGQSPKCTQGVREAFRQI 201
>pdb|2YNM|D Chain D, Structure Of The Adpxalf3-stabilized Transition State Of
The Nitrogenase-like Dark-operative Protochlorophyllide
Oxidoreductase Complex From Prochlorococcus Marinus With
Its Substrate Protochlorophyllide A
Length = 530
Score = 28.5 bits (62), Expect = 1.0, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 26/62 (41%), Gaps = 4/62 (6%)
Query: 48 GMLAAWFRLKYPHIALGAVASSAPILYFDNITPSNAYYDLVSKDFREGSESCYKTIKQSW 107
G LA L P ++L A S +N S +Y L+ +E SE KQSW
Sbjct: 105 GSLAKGMGLNIPIVSLELPAYSKK----ENWGASETFYQLIRGLLKEISEDSSNNAKQSW 160
Query: 108 AE 109
E
Sbjct: 161 QE 162
>pdb|3BDV|A Chain A, Crystal Structure Of A Putative Yden-Like Hydrolase
(Eca3091) From Pectobacterium Atrosepticum Scri1043 At
1.66 A Resolution
pdb|3BDV|B Chain B, Crystal Structure Of A Putative Yden-Like Hydrolase
(Eca3091) From Pectobacterium Atrosepticum Scri1043 At
1.66 A Resolution
Length = 191
Score = 28.5 bits (62), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 19 ADYAGILLHIKKNLSAEMSPIIVVGASYGGMLAA 52
AD +L I++ LS P+I++G S+G + A
Sbjct: 56 ADLDRWVLAIRRELSVCTQPVILIGHSFGALAAC 89
>pdb|3HF3|A Chain A, Old Yellow Enzyme From Thermus Scotoductus Sa-01
pdb|3HF3|B Chain B, Old Yellow Enzyme From Thermus Scotoductus Sa-01
pdb|3HF3|C Chain C, Old Yellow Enzyme From Thermus Scotoductus Sa-01
pdb|3HF3|D Chain D, Old Yellow Enzyme From Thermus Scotoductus Sa-01
pdb|3HGJ|A Chain A, Old Yellow Enzyme From Thermus Scotoductus Sa-01
Complexed With P-Hydroxy-Benzaldehyde
pdb|3HGJ|B Chain B, Old Yellow Enzyme From Thermus Scotoductus Sa-01
Complexed With P-Hydroxy-Benzaldehyde
pdb|3HGJ|C Chain C, Old Yellow Enzyme From Thermus Scotoductus Sa-01
Complexed With P-Hydroxy-Benzaldehyde
pdb|3HGJ|D Chain D, Old Yellow Enzyme From Thermus Scotoductus Sa-01
Complexed With P-Hydroxy-Benzaldehyde
Length = 349
Score = 28.1 bits (61), Expect = 1.4, Method: Composition-based stats.
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 26 LHIKKNLSAEMSPIIVVGASYGGMLAAWFRLKYPHIALGAVA 67
L +K L+ MSP+ A+ G + W L YP ALG V
Sbjct: 13 LRLKNRLA--MSPMCQYSATLEGEVTDWHLLHYPTRALGGVG 52
>pdb|3S2C|A Chain A, Structure Of The Thermostable Gh51
Alpha-L-Arabinofuranosidase From Thermotoga Petrophila
Rku-1
pdb|3S2C|B Chain B, Structure Of The Thermostable Gh51
Alpha-L-Arabinofuranosidase From Thermotoga Petrophila
Rku-1
pdb|3S2C|C Chain C, Structure Of The Thermostable Gh51
Alpha-L-Arabinofuranosidase From Thermotoga Petrophila
Rku-1
pdb|3S2C|D Chain D, Structure Of The Thermostable Gh51
Alpha-L-Arabinofuranosidase From Thermotoga Petrophila
Rku-1
pdb|3S2C|E Chain E, Structure Of The Thermostable Gh51
Alpha-L-Arabinofuranosidase From Thermotoga Petrophila
Rku-1
pdb|3S2C|F Chain F, Structure Of The Thermostable Gh51
Alpha-L-Arabinofuranosidase From Thermotoga Petrophila
Rku-1
pdb|3S2C|G Chain G, Structure Of The Thermostable Gh51
Alpha-L-Arabinofuranosidase From Thermotoga Petrophila
Rku-1
pdb|3S2C|H Chain H, Structure Of The Thermostable Gh51
Alpha-L-Arabinofuranosidase From Thermotoga Petrophila
Rku-1
pdb|3S2C|I Chain I, Structure Of The Thermostable Gh51
Alpha-L-Arabinofuranosidase From Thermotoga Petrophila
Rku-1
pdb|3S2C|J Chain J, Structure Of The Thermostable Gh51
Alpha-L-Arabinofuranosidase From Thermotoga Petrophila
Rku-1
pdb|3S2C|K Chain K, Structure Of The Thermostable Gh51
Alpha-L-Arabinofuranosidase From Thermotoga Petrophila
Rku-1
pdb|3S2C|L Chain L, Structure Of The Thermostable Gh51
Alpha-L-Arabinofuranosidase From Thermotoga Petrophila
Rku-1
Length = 484
Score = 27.3 bits (59), Expect = 2.0, Method: Composition-based stats.
Identities = 15/51 (29%), Positives = 22/51 (43%)
Query: 53 WFRLKYPHIALGAVASSAPILYFDNITPSNAYYDLVSKDFREGSESCYKTI 103
W ++ P I AV PI + + D +S F GSE Y+T+
Sbjct: 197 WMKVFDPTIKAIAVGCDDPIWNLRVLQEAGDVIDFISYHFYTGSEDYYETV 247
>pdb|3OC4|A Chain A, Crystal Structure Of A Pyridine Nucleotide-Disulfide
Family Oxidoreductase From The Enterococcus Faecalis
V583
pdb|3OC4|B Chain B, Crystal Structure Of A Pyridine Nucleotide-Disulfide
Family Oxidoreductase From The Enterococcus Faecalis
V583
Length = 452
Score = 26.6 bits (57), Expect = 3.3, Method: Composition-based stats.
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 39 IIVVGASYGGMLAAWF-RLKYPHIALGAVASSAPILYF 75
I+++GAS+ G+ AA R KYP + + A + Y
Sbjct: 5 IVIIGASFAGISAAIASRKKYPQAEISLIDKQATVGYL 42
>pdb|4ATW|A Chain A, The Crystal Structure Of Arabinofuranosidase
pdb|4ATW|B Chain B, The Crystal Structure Of Arabinofuranosidase
pdb|4ATW|C Chain C, The Crystal Structure Of Arabinofuranosidase
pdb|4ATW|D Chain D, The Crystal Structure Of Arabinofuranosidase
pdb|4ATW|E Chain E, The Crystal Structure Of Arabinofuranosidase
pdb|4ATW|F Chain F, The Crystal Structure Of Arabinofuranosidase
Length = 482
Score = 26.2 bits (56), Expect = 5.3, Method: Composition-based stats.
Identities = 14/51 (27%), Positives = 22/51 (43%)
Query: 53 WFRLKYPHIALGAVASSAPILYFDNITPSNAYYDLVSKDFREGSESCYKTI 103
W ++ P I AV PI + + D +S F GS+ Y+T+
Sbjct: 197 WMKVFDPTIKAIAVGCDDPIWNLRVLQEAGDVIDFISYHFYTGSDDYYETV 247
>pdb|3UG3|A Chain A, Crystal Structure Of Alpha-L-Arabinofuranosidase From
Thermotoga Maritima Ligand Free Form
pdb|3UG3|B Chain B, Crystal Structure Of Alpha-L-Arabinofuranosidase From
Thermotoga Maritima Ligand Free Form
pdb|3UG3|C Chain C, Crystal Structure Of Alpha-L-Arabinofuranosidase From
Thermotoga Maritima Ligand Free Form
pdb|3UG3|D Chain D, Crystal Structure Of Alpha-L-Arabinofuranosidase From
Thermotoga Maritima Ligand Free Form
pdb|3UG3|E Chain E, Crystal Structure Of Alpha-L-Arabinofuranosidase From
Thermotoga Maritima Ligand Free Form
pdb|3UG3|F Chain F, Crystal Structure Of Alpha-L-Arabinofuranosidase From
Thermotoga Maritima Ligand Free Form
pdb|3UG4|A Chain A, Crystal Structure Of Alpha-L-Arabinofuranosidase From
Thermotoga Maritima Arabinose Complex
pdb|3UG4|B Chain B, Crystal Structure Of Alpha-L-Arabinofuranosidase From
Thermotoga Maritima Arabinose Complex
pdb|3UG4|C Chain C, Crystal Structure Of Alpha-L-Arabinofuranosidase From
Thermotoga Maritima Arabinose Complex
pdb|3UG4|D Chain D, Crystal Structure Of Alpha-L-Arabinofuranosidase From
Thermotoga Maritima Arabinose Complex
pdb|3UG4|E Chain E, Crystal Structure Of Alpha-L-Arabinofuranosidase From
Thermotoga Maritima Arabinose Complex
pdb|3UG4|F Chain F, Crystal Structure Of Alpha-L-Arabinofuranosidase From
Thermotoga Maritima Arabinose Complex
pdb|3UG5|A Chain A, Crystal Structure Of Alpha-L-Arabinofuranosidase From
Thermotoga Maritima Xylose Complex
pdb|3UG5|B Chain B, Crystal Structure Of Alpha-L-Arabinofuranosidase From
Thermotoga Maritima Xylose Complex
pdb|3UG5|C Chain C, Crystal Structure Of Alpha-L-Arabinofuranosidase From
Thermotoga Maritima Xylose Complex
pdb|3UG5|D Chain D, Crystal Structure Of Alpha-L-Arabinofuranosidase From
Thermotoga Maritima Xylose Complex
pdb|3UG5|E Chain E, Crystal Structure Of Alpha-L-Arabinofuranosidase From
Thermotoga Maritima Xylose Complex
pdb|3UG5|F Chain F, Crystal Structure Of Alpha-L-Arabinofuranosidase From
Thermotoga Maritima Xylose Complex
Length = 504
Score = 26.2 bits (56), Expect = 5.3, Method: Composition-based stats.
Identities = 14/51 (27%), Positives = 22/51 (43%)
Query: 53 WFRLKYPHIALGAVASSAPILYFDNITPSNAYYDLVSKDFREGSESCYKTI 103
W ++ P I AV PI + + D +S F GS+ Y+T+
Sbjct: 217 WMKVFDPTIKAIAVGCDDPIWNLRVLQEAGDVIDFISYHFYTGSDDYYETV 267
>pdb|2QJW|A Chain A, Crystal Structure Of A Putative Hydrolase Of The AlphaBETA
Superfamily (Xcc1541) From Xanthomonas Campestris Pv.
Campestris At 1.35 A Resolution
pdb|2QJW|B Chain B, Crystal Structure Of A Putative Hydrolase Of The AlphaBETA
Superfamily (Xcc1541) From Xanthomonas Campestris Pv.
Campestris At 1.35 A Resolution
pdb|2QJW|C Chain C, Crystal Structure Of A Putative Hydrolase Of The AlphaBETA
Superfamily (Xcc1541) From Xanthomonas Campestris Pv.
Campestris At 1.35 A Resolution
pdb|2QJW|D Chain D, Crystal Structure Of A Putative Hydrolase Of The AlphaBETA
Superfamily (Xcc1541) From Xanthomonas Campestris Pv.
Campestris At 1.35 A Resolution
Length = 176
Score = 25.8 bits (55), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Query: 9 VDISTLLKPLADYAGILLHIKK--NLSAEMSPIIVVGASYGGMLAAWFRLKYPHIAL 63
+D L L D G L + + + E P+++ G+S G +AA L+ P AL
Sbjct: 44 LDARRDLGQLGDVRGRLQRLLEIARAATEKGPVVLAGSSLGSYIAAQVSLQVPTRAL 100
>pdb|1XRL|A Chain A, Crystal Structure Of Active Site F1-Mutant Y205f Complex
With Inhibitor Pck
Length = 293
Score = 25.0 bits (53), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 39 IIVVGASYGGMLAAWFRLKYPHIALGAVASSA 70
+ ++G+SYGG LA + +KY G + S
Sbjct: 99 VFLMGSSYGGALALAYAVKYQDHLKGLIVSGG 130
>pdb|1MTZ|A Chain A, Crystal Structure Of The Tricorn Interacting Factor F1
pdb|1MU0|A Chain A, Crystal Structure Of The Tricorn Interacting Factor F1
Complex With Pck
Length = 293
Score = 25.0 bits (53), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 39 IIVVGASYGGMLAAWFRLKYPHIALGAVASSA 70
+ ++G+SYGG LA + +KY G + S
Sbjct: 99 VFLMGSSYGGALALAYAVKYQDHLKGLIVSGG 130
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,371,593
Number of Sequences: 62578
Number of extensions: 121073
Number of successful extensions: 346
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 329
Number of HSP's gapped (non-prelim): 22
length of query: 112
length of database: 14,973,337
effective HSP length: 76
effective length of query: 36
effective length of database: 10,217,409
effective search space: 367826724
effective search space used: 367826724
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)