BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037023
(144 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1FSK|A Chain A, Complex Formation Between A Fab Fragment Of A Monoclonal
Igg Antibody And The Major Allergen From Birch Pollen
Bet V 1
pdb|1FSK|D Chain D, Complex Formation Between A Fab Fragment Of A Monoclonal
Igg Antibody And The Major Allergen From Birch Pollen
Bet V 1
pdb|1FSK|G Chain G, Complex Formation Between A Fab Fragment Of A Monoclonal
Igg Antibody And The Major Allergen From Birch Pollen
Bet V 1
pdb|1FSK|J Chain J, Complex Formation Between A Fab Fragment Of A Monoclonal
Igg Antibody And The Major Allergen From Birch Pollen
Bet V 1
pdb|1BV1|A Chain A, Birch Pollen Allergen Bet V 1
pdb|1BTV|A Chain A, Structure Of Bet V 1, Nmr, 20 Structures
Length = 159
Score = 105 bits (263), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 63/150 (42%), Positives = 86/150 (57%), Gaps = 11/150 (7%)
Query: 1 VPAAVAPSRMFEAVILDCHNLFPKLAPHAFKSIDILEGDGGDGTLKRYDFEVLLNFK--- 57
+PAA R+F+A ILD NLFPK+AP A S++ +EG+GG GT+K+ F L FK
Sbjct: 13 IPAA----RLFKAFILDGDNLFPKVAPQAISSVENIEGNGGPGTIKKISFPEGLPFKYVK 68
Query: 58 ----TGTHDNFSIKYTIYERDGGWGIFEKVVYDIKFVASGDSGCIYKVAAECYLKAGEES 113
H NF Y++ E EK+ +IK VA+ D G I K++ + + K E
Sbjct: 69 DRVDEVDHTNFKYNYSVIEGGPIGDTLEKISNEIKIVATPDGGSILKISNKYHTKGDHEV 128
Query: 114 KQEFVKDSQEKGTSLYRAVESHLLANPHLY 143
K E VK S+E G +L RAVES+LLA+ Y
Sbjct: 129 KAEQVKASKEMGETLLRAVESYLLAHSDAY 158
>pdb|1FM4|A Chain A, Crystal Structure Of The Birch Pollen Allergen Bet V 1l
Length = 159
Score = 104 bits (260), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 61/150 (40%), Positives = 85/150 (56%), Gaps = 11/150 (7%)
Query: 1 VPAAVAPSRMFEAVILDCHNLFPKLAPHAFKSIDILEGDGGDGTLKRYDFEVLLNFK--- 57
+PAA RMF+A ILD L PK+AP A S++ +EG+GG GT+K+ +F FK
Sbjct: 13 IPAA----RMFKAFILDGDKLVPKVAPQAISSVENIEGNGGPGTIKKINFPEGFPFKYVK 68
Query: 58 ----TGTHDNFSIKYTIYERDGGWGIFEKVVYDIKFVASGDSGCIYKVAAECYLKAGEES 113
H NF Y++ E EK+ +IK VA+ D GC+ K++ + + K E
Sbjct: 69 DRVDEVDHTNFKYNYSVIEGGPVGDTLEKISNEIKIVATPDGGCVLKISNKYHTKGNHEV 128
Query: 114 KQEFVKDSQEKGTSLYRAVESHLLANPHLY 143
K E VK S+E G +L RAVES+LLA+ Y
Sbjct: 129 KAEQVKASKEMGETLLRAVESYLLAHSDAY 158
>pdb|4A80|A Chain A, Crystal Structure Of Major Birch Pollen Allergen Bet V 1 A
In Complex With 8-Anilinonaphthalene-1-Sulfonate (Ans)
pdb|4A81|A Chain A, Crystal Structure Of Major Birch Pollen Allergen Bet V 1 A
In Ternary Complex With 8-Anilinonaphthalene-1-Sulfonate
( Ans) And Deoxycholic Acid
pdb|4A83|A Chain A, Crystal Structure Of Major Birch Pollen Allergen Bet V 1 A
In Complex With Deoxycholate.
pdb|4A85|A Chain A, Crystal Structure Of Major Birch Pollen Allergen Bet V 1 A
In Complex With Kinetin.
pdb|4A86|A Chain A, Crystal Structure Of Major Birch Pollen Allergen Bet V 1 A
In Ternary Complex With Kinetin And
8-Anilinonaphthalene-1- Sulfonate (Ans)
pdb|4A87|A Chain A, Crystal Structure Of Major Birch Pollen Allergen Bet V 1 A
In Complex With Naringenin.
pdb|4A88|A Chain A, Crystal Structure Of Native Major Birch Pollen Allergen
Bet V 1 Isoform A
pdb|4A8G|A Chain A, Crystal Structure Of Major Birch Pollen Allergen Bet V 1 A
In Complex With Dimethylbenzylammonium Propane Sulfonate
Length = 159
Score = 103 bits (258), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 62/150 (41%), Positives = 85/150 (56%), Gaps = 11/150 (7%)
Query: 1 VPAAVAPSRMFEAVILDCHNLFPKLAPHAFKSIDILEGDGGDGTLKRYDFEVLLNFK--- 57
+PAA R+F+A ILD NLFPK+AP A S++ +EG+GG GT+K+ F FK
Sbjct: 13 IPAA----RLFKAFILDGDNLFPKVAPQAISSVENIEGNGGPGTIKKISFPEGFPFKYVK 68
Query: 58 ----TGTHDNFSIKYTIYERDGGWGIFEKVVYDIKFVASGDSGCIYKVAAECYLKAGEES 113
H NF Y++ E EK+ +IK VA+ D G I K++ + + K E
Sbjct: 69 DRVDEVDHTNFKYNYSVIEGGPIGDTLEKISNEIKIVATPDGGSILKISNKYHTKGDHEV 128
Query: 114 KQEFVKDSQEKGTSLYRAVESHLLANPHLY 143
K E VK S+E G +L RAVES+LLA+ Y
Sbjct: 129 KAEQVKASKEMGETLLRAVESYLLAHSDAY 158
>pdb|1LLT|A Chain A, Birch Pollen Allergen Bet V 1 Mutant E45s
Length = 159
Score = 103 bits (257), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 62/150 (41%), Positives = 85/150 (56%), Gaps = 11/150 (7%)
Query: 1 VPAAVAPSRMFEAVILDCHNLFPKLAPHAFKSIDILEGDGGDGTLKRYDFEVLLNFK--- 57
+PAA R+F+A ILD NLFPK+AP A S++ + G+GG GT+K+ F L FK
Sbjct: 13 IPAA----RLFKAFILDGDNLFPKVAPQAISSVENISGNGGPGTIKKISFPEGLPFKYVK 68
Query: 58 ----TGTHDNFSIKYTIYERDGGWGIFEKVVYDIKFVASGDSGCIYKVAAECYLKAGEES 113
H NF Y++ E EK+ +IK VA+ D G I K++ + + K E
Sbjct: 69 DRVDEVDHTNFKYNYSVIEGGPIGDTLEKISNEIKIVATPDGGSILKISNKYHTKGDHEV 128
Query: 114 KQEFVKDSQEKGTSLYRAVESHLLANPHLY 143
K E VK S+E G +L RAVES+LLA+ Y
Sbjct: 129 KAEQVKASKEMGETLLRAVESYLLAHSDAY 158
>pdb|1B6F|A Chain A, Birch Pollen Allergen Bet V 1
Length = 159
Score = 103 bits (256), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 62/150 (41%), Positives = 85/150 (56%), Gaps = 11/150 (7%)
Query: 1 VPAAVAPSRMFEAVILDCHNLFPKLAPHAFKSIDILEGDGGDGTLKRYDFEVLLNFK--- 57
+PAA R+F+A ILD NLFPK+AP A S++ +EG+GG GT+K+ F FK
Sbjct: 13 IPAA----RLFKAFILDGDNLFPKVAPQAISSVENIEGNGGPGTIKKISFPEGFPFKYVK 68
Query: 58 ----TGTHDNFSIKYTIYERDGGWGIFEKVVYDIKFVASGDSGCIYKVAAECYLKAGEES 113
H NF Y++ E EK+ +IK VA+ D G I K++ + + K E
Sbjct: 69 DRVDEVDHTNFKYNYSVIEGGPIGDTLEKISNEIKIVATPDGGSILKISNKYHTKGDHEV 128
Query: 114 KQEFVKDSQEKGTSLYRAVESHLLANPHLY 143
K E VK S+E G +L RAVES+LLA+ Y
Sbjct: 129 KAEQVKASKELGETLLRAVESYLLAHSDAY 158
>pdb|1QMR|A Chain A, Birch Pollen Allergen Bet V 1 Mutant N28t, K32q, E45s,
P108g
Length = 159
Score = 103 bits (256), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 61/150 (40%), Positives = 85/150 (56%), Gaps = 11/150 (7%)
Query: 1 VPAAVAPSRMFEAVILDCHNLFPKLAPHAFKSIDILEGDGGDGTLKRYDFEVLLNFK--- 57
+PAA R+F+A ILD LFP++AP A S++ + G+GG GT+K+ F L FK
Sbjct: 13 IPAA----RLFKAFILDGDTLFPQVAPQAISSVENISGNGGPGTIKKISFPEGLPFKYVK 68
Query: 58 ----TGTHDNFSIKYTIYERDGGWGIFEKVVYDIKFVASGDSGCIYKVAAECYLKAGEES 113
H NF Y++ E EK+ +IK VA+GD G I K++ + + K E
Sbjct: 69 DRVDEVDHTNFKYNYSVIEGGPIGDTLEKISNEIKIVATGDGGSILKISNKYHTKGDHEV 128
Query: 114 KQEFVKDSQEKGTSLYRAVESHLLANPHLY 143
K E VK S+E G +L RAVES+LLA+ Y
Sbjct: 129 KAEQVKASKEMGETLLRAVESYLLAHSDAY 158
>pdb|1E09|A Chain A, Solution Structure Of The Major Cherry Allergen Pru Av 1
Length = 159
Score = 102 bits (253), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 55/148 (37%), Positives = 82/148 (55%), Gaps = 7/148 (4%)
Query: 3 AAVAPSRMFEAVILDCHNLFPKLAPHAFKSIDILEGDGGDGTLKRYDFEVLLNFKTGTH- 61
+ + P R+F+A +LD NL PK+AP A K +ILEGDGG GT+K+ F + H
Sbjct: 11 SEIPPPRLFKAFVLDADNLVPKIAPQAIKHSEILEGDGGPGTIKKITFGEGSQYGYVKHK 70
Query: 62 ------DNFSIKYTIYERDGGWGIFEKVVYDIKFVASGDSGCIYKVAAECYLKAGEESKQ 115
+N+S YT+ E D EK+ Y+ K VAS G I K + + K E K+
Sbjct: 71 IDSIDKENYSYSYTLIEGDALGDTLEKISYETKLVASPSGGSIIKSTSHYHTKGNVEIKE 130
Query: 116 EFVKDSQEKGTSLYRAVESHLLANPHLY 143
E VK +EK ++L++ +E++L +P Y
Sbjct: 131 EHVKAGKEKASNLFKLIETYLKGHPDAY 158
>pdb|4A84|A Chain A, Crystal Structure Of Major Birch Pollen Allergen Bet V 1 A
F30v Mutant In Complex With Deoxycholate
Length = 159
Score = 101 bits (251), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 61/150 (40%), Positives = 84/150 (56%), Gaps = 11/150 (7%)
Query: 1 VPAAVAPSRMFEAVILDCHNLFPKLAPHAFKSIDILEGDGGDGTLKRYDFEVLLNFK--- 57
+PAA R+F+A ILD NL PK+AP A S++ +EG+GG GT+K+ F FK
Sbjct: 13 IPAA----RLFKAFILDGDNLVPKVAPQAISSVENIEGNGGPGTIKKISFPEGFPFKYVK 68
Query: 58 ----TGTHDNFSIKYTIYERDGGWGIFEKVVYDIKFVASGDSGCIYKVAAECYLKAGEES 113
H NF Y++ E EK+ +IK VA+ D G I K++ + + K E
Sbjct: 69 DRVDEVDHTNFKYNYSVIEGGPIGDTLEKISNEIKIVATPDGGSILKISNKYHTKGDHEV 128
Query: 114 KQEFVKDSQEKGTSLYRAVESHLLANPHLY 143
K E VK S+E G +L RAVES+LLA+ Y
Sbjct: 129 KAEQVKASKEMGETLLRAVESYLLAHSDAY 158
>pdb|4A8U|A Chain A, Crystal Structure Of Native Birch Pollen Allergen Bet V 1
Isoform J
pdb|4A8V|A Chain A, Crystal Structure Of Birch Pollen Allergen Bet V 1 Isoform
J In Complex With 8-Anilinonaphthalene-1-Sulfonate (Ans)
Length = 159
Score = 101 bits (251), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 60/150 (40%), Positives = 84/150 (56%), Gaps = 11/150 (7%)
Query: 1 VPAAVAPSRMFEAVILDCHNLFPKLAPHAFKSIDILEGDGGDGTLKRYDFEVLLNFK--- 57
+PAA R+F+A ILD NLFPK+AP A S++ +EG+GG GT+K+ F FK
Sbjct: 13 IPAA----RLFKAFILDGDNLFPKVAPQAISSVENIEGNGGPGTIKKISFPEGFPFKYVK 68
Query: 58 ----TGTHDNFSIKYTIYERDGGWGIFEKVVYDIKFVASGDSGCIYKVAAECYLKAGEES 113
H NF Y++ E EK+ +IK VA+ + G I K+ + + K E
Sbjct: 69 DRVDEVDHTNFKYSYSVIEGGPVGDTLEKISNEIKIVATPNGGSILKINNKYHTKGDHEV 128
Query: 114 KQEFVKDSQEKGTSLYRAVESHLLANPHLY 143
K E +K S+E G +L RAVES+LLA+ Y
Sbjct: 129 KAEQIKASKEMGETLLRAVESYLLAHSDAY 158
>pdb|1H2O|A Chain A, Solution Structure Of The Major Cherry Allergen Pru Av 1
Mutant E45w
Length = 159
Score = 99.0 bits (245), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 54/148 (36%), Positives = 81/148 (54%), Gaps = 7/148 (4%)
Query: 3 AAVAPSRMFEAVILDCHNLFPKLAPHAFKSIDILEGDGGDGTLKRYDFEVLLNFKTGTH- 61
+ + P R+F+A +LD NL PK+AP A K +IL GDGG GT+K+ F + H
Sbjct: 11 SEIPPPRLFKAFVLDADNLVPKIAPQAIKHSEILWGDGGPGTIKKITFGEGSQYGYVKHK 70
Query: 62 ------DNFSIKYTIYERDGGWGIFEKVVYDIKFVASGDSGCIYKVAAECYLKAGEESKQ 115
+N+S YT+ E D EK+ Y+ K VAS G I K + + K E K+
Sbjct: 71 IDSIDKENYSYSYTLIEGDALGDTLEKISYETKLVASPSGGSIIKSTSHYHTKGNVEIKE 130
Query: 116 EFVKDSQEKGTSLYRAVESHLLANPHLY 143
E VK +EK ++L++ +E++L +P Y
Sbjct: 131 EHVKAGKEKASNLFKLIETYLKGHPDAY 158
>pdb|3IE5|A Chain A, Crystal Structure Of Hyp-1 Protein From Hypericum
Perforatum (St John's Wort) Involved In Hypericin
Biosynthesis
pdb|3IE5|B Chain B, Crystal Structure Of Hyp-1 Protein From Hypericum
Perforatum (St John's Wort) Involved In Hypericin
Biosynthesis
Length = 165
Score = 89.7 bits (221), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 55/149 (36%), Positives = 81/149 (54%), Gaps = 8/149 (5%)
Query: 3 AAVAPSRMFEAVILDCHNLFPKLAPHAFKSIDILEGDGGDGTLKRYDFE-------VLLN 55
+ +AP R+F+A++L+ H + K PH FKS +I+EGDGG GT+ + F +L
Sbjct: 18 SPIAPHRLFKALVLERHQVLVKAQPHVFKSGEIIEGDGGVGTVTKITFVDGHPLTYMLHK 77
Query: 56 FKTGTHDNFSIKYTIYERDGGWGIFEKVVYDIKFVASGDSGCIYKVAAECYLKAGEESKQ 115
F NF KYT++E D EKVVY++K A G G K+ + K G +
Sbjct: 78 FDEIDAANFYCKYTLFEGDVLRDNIEKVVYEVKLEAVG-GGSKGKITVTYHPKPGCTVNE 136
Query: 116 EFVKDSQEKGTSLYRAVESHLLANPHLYA 144
E VK ++K Y+ VE +L ANP ++A
Sbjct: 137 EEVKIGEKKAYEFYKQVEEYLAANPEVFA 165
>pdb|2LPX|A Chain A, Solution Structure Of Strawberry Allergen Fra A 1e
Length = 170
Score = 84.3 bits (207), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 49/146 (33%), Positives = 77/146 (52%), Gaps = 7/146 (4%)
Query: 5 VAPSRMFEAVILDCHNLFPKLAPHAFKSIDILEGDGGDGTLKRYDFEVLLNFKTGTHD-- 62
+ ++F+A +LD NL PK+AP A K +ILEGDGG GT+K+ F ++ H
Sbjct: 14 IPAPKLFKAFVLDADNLIPKIAPQAVKCAEILEGDGGPGTIKKITFGEGSHYGYVKHKIH 73
Query: 63 -----NFSIKYTIYERDGGWGIFEKVVYDIKFVASGDSGCIYKVAAECYLKAGEESKQEF 117
N + Y++ E D EK+ Y+ K V++ G I K ++ + K E K+E
Sbjct: 74 SIDKVNHTYSYSLIEGDALSENIEKIDYETKLVSAPHGGTIIKTTSKYHTKGDVEIKEEH 133
Query: 118 VKDSQEKGTSLYRAVESHLLANPHLY 143
VK +EK L++ +E +L +P Y
Sbjct: 134 VKAGKEKAAHLFKLIEGYLKDHPSEY 159
>pdb|2K7H|A Chain A, Nmr Solution Structure Of Soybean Allergen Gly M 4
Length = 157
Score = 73.6 bits (179), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 44/147 (29%), Positives = 79/147 (53%), Gaps = 8/147 (5%)
Query: 1 VPAAVAPSRMFEAVILDCHNLFPKLAPHAFKSIDILEGDGGDGTLKRYDFE-------VL 53
+ + VAP+ +++A++ D N+ PK A +FKS++ +EG+GG GT+K+ F VL
Sbjct: 9 INSPVAPATLYKALVTDADNVIPK-ALDSFKSVENVEGNGGPGTIKKITFLEDGETKFVL 67
Query: 54 LNFKTGTHDNFSIKYTIYERDGGWGIFEKVVYDIKFVASGDSGCIYKVAAECYLKAGEES 113
++ N Y++ EK+ +D K VA + G K+ + K E
Sbjct: 68 HKIESIDEANLGYSYSVVGGAALPDTAEKITFDSKLVAGPNGGSAGKLTVKYETKGDAEP 127
Query: 114 KQEFVKDSQEKGTSLYRAVESHLLANP 140
Q+ +K + K +L++A+E++LLA+P
Sbjct: 128 NQDELKTGKAKADALFKAIEAYLLAHP 154
>pdb|2BK0|A Chain A, Crystal Structure Of The Major Celery Allergen Api G 1
pdb|2BK0|B Chain B, Crystal Structure Of The Major Celery Allergen Api G 1
Length = 154
Score = 71.6 bits (174), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 75/144 (52%), Gaps = 8/144 (5%)
Query: 3 AAVAPSRMFEAVILDCHNLFPKLAPHAFKSIDILEGDGGDGTLKRYDF-------EVLLN 55
++V+ ++F+ ++D + PK AP A+KS++I +GDGG GTLK + L
Sbjct: 12 SSVSAEKIFQGFVIDVDTVLPKAAPGAYKSVEI-KGDGGPGTLKIITLPDGGPITTMTLR 70
Query: 56 FKTGTHDNFSIKYTIYERDGGWGIFEKVVYDIKFVASGDSGCIYKVAAECYLKAGEESKQ 115
+ + Y++ + D G E + + V + D G I K A + K +
Sbjct: 71 IDGVNKEALTFDYSVIDGDILLGFIESIENHVVLVPTADGGSICKTTAIFHTKGDAVVPE 130
Query: 116 EFVKDSQEKGTSLYRAVESHLLAN 139
E +K + E+ T+L++A+E++L+AN
Sbjct: 131 ENIKYANEQNTALFKALEAYLIAN 154
>pdb|1IFV|A Chain A, Crystal Structure Of Pathogenesis-Related Protein
Llpr10.1b From Yellow Lupine
pdb|1IFV|B Chain B, Crystal Structure Of Pathogenesis-Related Protein
Llpr10.1b From Yellow Lupine
Length = 155
Score = 70.9 bits (172), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 83/150 (55%), Gaps = 15/150 (10%)
Query: 2 PAAVAPSRMFEAVILDCHNLFPKLAPHAFKSIDILEGDGGDGTLKRYDFE-------VLL 54
P+AVA +++F+A+ D ++ PK+ +S++I+EG+GG GT+K+ VL
Sbjct: 10 PSAVAQAKLFKALTKDSDDIIPKVIEQ-IQSVEIVEGNGGPGTVKKITASHGGHTSYVLH 68
Query: 55 NFKTGTHDNFSIKYTIYERDGGWGI---FEKVVYDIKFVASGDSGCIYKVAAECYLKAGE 111
+F Y+I GG G+ EK+ ++ K ++ D G I K+ + + K G+
Sbjct: 69 KIDAIDEASFEYNYSIV---GGTGLDESLEKITFESKLLSGPDGGSIGKIKVKFHTK-GD 124
Query: 112 ESKQEFVKDSQEKGTSLYRAVESHLLANPH 141
++++ +GT L++AVE ++LANP+
Sbjct: 125 VLSDAVREEAKARGTGLFKAVEGYVLANPN 154
>pdb|2QIM|A Chain A, Crystal Structure Of Pathogenesis-Related Protein
Llpr-10.2b From Yellow Lupine In Complex With Cytokinin
pdb|3E85|A Chain A, Crystal Structure Of Pathogenesis-Related Protein
Llpr-10.2b From Yellow Lupine In Complex With
Diphenylurea
Length = 158
Score = 70.1 bits (170), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 79/148 (53%), Gaps = 14/148 (9%)
Query: 3 AAVAPSRMFEAVILDCHNLFPKLAPHAFKSIDILEGDGGDGTLKRYDF-------EVLLN 55
+ +AP+++++A++ D + PK A +S++I+EG+GG GT+K+ F VL
Sbjct: 12 STIAPAKLYKALVTDADIIIPK-AVETIQSVEIVEGNGGPGTIKKLTFIEGGESKYVLHK 70
Query: 56 FKTGTHDNFSIKYTIYERDGGWGI---FEKVVYDIKFVASGDSGCIYKVAAECYLKAGEE 112
+ N Y+I GG G+ EK+ ++ K V + G I KV + K +
Sbjct: 71 IEAIDEANLGYNYSIV---GGVGLPDTIEKISFETKLVEGANGGSIGKVTIKIETKGDAQ 127
Query: 113 SKQEFVKDSQEKGTSLYRAVESHLLANP 140
+E K ++ +G + ++A+ES+L A+P
Sbjct: 128 PNEEEGKAAKARGDAFFKAIESYLSAHP 155
>pdb|1XDF|A Chain A, Crystal Structure Of Pathogenesis-Related Protein
Llpr-10.2a From Yellow Lupine
pdb|1XDF|B Chain B, Crystal Structure Of Pathogenesis-Related Protein
Llpr-10.2a From Yellow Lupine
Length = 157
Score = 69.3 bits (168), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 78/149 (52%), Gaps = 14/149 (9%)
Query: 3 AAVAPSRMFEAVILDCHNLFPKLAPHAFKSIDILEGDGGDGTLKRYDF-------EVLLN 55
+ +AP+R+++A++ D + PK A A +SI+ +EG+GG GT+K+ VL
Sbjct: 11 STIAPARLYKALVKDADAIIPK-AVEAIQSIETVEGNGGPGTIKKLTLIEGGETKYVLHK 69
Query: 56 FKTGTHDNFSIKYTIYERDGGWGI---FEKVVYDIKFVASGDSGCIYKVAAECYLKAGEE 112
+ N Y+I GG G+ EK+ ++ K V + G I KV + K +
Sbjct: 70 IEAVDEANLRYNYSIV---GGVGLPDTIEKISFETKLVEGANGGSIGKVTIKIETKGDAQ 126
Query: 113 SKQEFVKDSQEKGTSLYRAVESHLLANPH 141
+E K ++ +G + ++A+E++L A+P
Sbjct: 127 PNEEEGKAAKARGDAFFKAIENYLSAHPE 155
>pdb|3RWS|A Chain A, Crystal Structure Of Medicago Truncatula Nodulin 13
(Mtn13) In Complex With Trans-Zeatin
Length = 168
Score = 67.4 bits (163), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 77/148 (52%), Gaps = 13/148 (8%)
Query: 3 AAVAPSRMFEAVILDCHNLFPKLAPHAFKSIDILEGDGGDGTLKRYDF-----EVLLNFK 57
++++ +++ ++ D + ++PK P + + LEGDGG GT+K+ F +
Sbjct: 17 SSLSAEKLYRGIVEDGNIIYPKALPRFIEKAETLEGDGGPGTIKKLTFVGDFGSTKQHID 76
Query: 58 TGTHDNFSIKYTIYERDGGWGI----FEKVVYDIKFVASGDSGCIYKVAAECYLKAGE-E 112
+N + Y++YE G + EK+V++ K V + + GCI K + Y K + E
Sbjct: 77 MVDRENCAYTYSVYE---GIALSDQPLEKIVFEFKLVPTPEEGCIVKSTTKYYTKGDDIE 133
Query: 113 SKQEFVKDSQEKGTSLYRAVESHLLANP 140
+++++ E+ +AVES LLANP
Sbjct: 134 LSKDYLEAGIERFEGFTKAVESFLLANP 161
>pdb|2WQL|A Chain A, Crystal Structure Of The Major Carrot Allergen Dau C 1
pdb|2WQL|B Chain B, Crystal Structure Of The Major Carrot Allergen Dau C 1
pdb|2WQL|C Chain C, Crystal Structure Of The Major Carrot Allergen Dau C 1
pdb|2WQL|D Chain D, Crystal Structure Of The Major Carrot Allergen Dau C 1
Length = 154
Score = 65.1 bits (157), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 76/146 (52%), Gaps = 8/146 (5%)
Query: 1 VPAAVAPSRMFEAVILDCHNLFPKLAPHAFKSIDILEGDGGDGTLKRYDFE-----VLLN 55
+ ++V+ ++F ++LD + PK A A+KS+++ +GDGG GT++ +
Sbjct: 10 ITSSVSAEKIFSGIVLDVDTVIPKAATGAYKSVEV-KGDGGAGTVRIITLPEGSPITTMT 68
Query: 56 FKTGTHDNFSIKY--TIYERDGGWGIFEKVVYDIKFVASGDSGCIYKVAAECYLKAGEES 113
+T + ++ Y T+ + D G E + + V + D G I K A + K
Sbjct: 69 VRTDAVNKEALSYDSTVIDGDILLGFIESIETHMVVVPTADGGSITKTTAIFHTKGDAVV 128
Query: 114 KQEFVKDSQEKGTSLYRAVESHLLAN 139
+E +K + + T+L++A+E++L+AN
Sbjct: 129 PEENIKFADAQNTALFKAIEAYLIAN 154
>pdb|1ICX|A Chain A, Crystal Structure Of Pathogenesis-Related Protein
Llpr10.1a From Yellow Lupine
Length = 155
Score = 63.2 bits (152), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 77/146 (52%), Gaps = 11/146 (7%)
Query: 3 AAVAPSRMFEAVILDCHNLFPKLAPHAFKSIDILEGDGGDGTLKR-------YDFEVLLN 55
+ VAP+++++A+ D + PK+ +S++I+EG+GG GT+K+ + VL
Sbjct: 11 STVAPAKLYKALTKDSDEIVPKVI-EPIQSVEIVEGNGGPGTIKKIIAIHDGHTSFVLHK 69
Query: 56 FKTGTHDNFSIKYTIYERDGGWGIFEKVVYDIKFVASGDSGCIYKVAAECYLKAGEESKQ 115
N + Y+I +G EK+ Y+ K + D G I K+ + + K +
Sbjct: 70 LDAIDEANLTYNYSIIGGEGLDESLEKISYESKILPGPDGGSIGKINVKFHTKG--DVLS 127
Query: 116 EFVKDSQE-KGTSLYRAVESHLLANP 140
E V+D + KG L++A+E ++LA+P
Sbjct: 128 ETVRDQAKFKGLGLFKAIEGYVLAHP 153
>pdb|1TW0|A Chain A, Native Crystal Structure Of Spe16
pdb|1TW0|B Chain B, Native Crystal Structure Of Spe16
pdb|1TXC|A Chain A, Complex Crystal Structure Of Spe16 With Ans
pdb|1TXC|B Chain B, Complex Crystal Structure Of Spe16 With Ans
Length = 157
Score = 61.2 bits (147), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 73/151 (48%), Gaps = 14/151 (9%)
Query: 3 AAVAPSRMFEAVILDCHNLFPKLAPHAFKSIDILEGDGGDGTLKRYDFE-------VLLN 55
++VAP+++++A+ D + K+ +SI+++EG+GG GT+K+ VL
Sbjct: 11 SSVAPAKLYKALTKDSDTIAQKI-DGPIQSIELVEGNGGVGTIKKITANEGDKTSFVLQK 69
Query: 56 FKTGTHDNFSIKYTIYERDGGWGI---FEKVVYDIKFVASGDSGCIYKVAAECYLKAGEE 112
N Y+I GG G+ EK+ ++ K VA G I KV + + K
Sbjct: 70 VDAIDEANLGYDYSIV---GGTGLPESLEKLSFETKVVAGSGGGSISKVTLKFHTKGDAP 126
Query: 113 SKQEFVKDSQEKGTSLYRAVESHLLANPHLY 143
D+ KG ++A+E ++LANP Y
Sbjct: 127 LSDAVRDDALAKGAGFFKAIEGYVLANPAEY 157
>pdb|2FLH|A Chain A, Crystal Structure Of Cytokinin-Specific Binding Protein
From Mung Bean In Complex With Cytokinin
pdb|2FLH|B Chain B, Crystal Structure Of Cytokinin-Specific Binding Protein
From Mung Bean In Complex With Cytokinin
pdb|2FLH|C Chain C, Crystal Structure Of Cytokinin-Specific Binding Protein
From Mung Bean In Complex With Cytokinin
pdb|2FLH|D Chain D, Crystal Structure Of Cytokinin-Specific Binding Protein
From Mung Bean In Complex With Cytokinin
pdb|3C0V|A Chain A, Crystal Structure Of Cytokinin-Specific Binding Protein
In Complex With Cytokinin And Ta6br12
pdb|3C0V|B Chain B, Crystal Structure Of Cytokinin-Specific Binding Protein
In Complex With Cytokinin And Ta6br12
pdb|3C0V|C Chain C, Crystal Structure Of Cytokinin-Specific Binding Protein
In Complex With Cytokinin And Ta6br12
pdb|3C0V|D Chain D, Crystal Structure Of Cytokinin-Specific Binding Protein
In Complex With Cytokinin And Ta6br12
Length = 155
Score = 37.4 bits (85), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 22/34 (64%)
Query: 17 DCHNLFPKLAPHAFKSIDILEGDGGDGTLKRYDF 50
D + PK+ PH K + ++EGDGG GT+ ++F
Sbjct: 25 DFITVVPKVLPHIVKDVQLIEGDGGVGTILIFNF 58
>pdb|3US7|A Chain A, Crystal Structure Of Phytohormone Binding Protein From
Medicago Truncatula In Complex With Gibberellic Acid
(Ga3)
Length = 156
Score = 33.5 bits (75), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 17 DCHNLFPKLAPHAFKSIDILEGDGGDGTLKRYDF 50
D + PK+ P+ K + ++EGDGG GT ++F
Sbjct: 25 DITLVVPKVLPNIVKDVQVIEGDGGVGTKLIFNF 58
>pdb|3L65|A Chain A, Xenobiotic Reductase A - C25a Mutant
pdb|3L66|A Chain A, Xenobiotic Reductase A - C25a Variant With Coumarin
Length = 363
Score = 29.6 bits (65), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 45/112 (40%), Gaps = 9/112 (8%)
Query: 8 SRMFEAVILDCHNLFPKLAPHAFKSIDILEGDGGDGTLKRYDFEVLLNFKTGTHD--NFS 65
SR + ++P+ P + +LE DG D E+ FK G D + S
Sbjct: 208 SRFLLETLAAVREVWPENLPLTAR-FGVLEYDGRDEQTLEESIELARRFKAGGLDLLSVS 266
Query: 66 IKYTIYERDGGWG------IFEKVVYDIKFVASGDSGCIYKVAAECYLKAGE 111
+ +TI + + WG I E+V + K + G AE L+A +
Sbjct: 267 VGFTIPDTNIPWGPAFMGPIAERVRREAKLPVTSAWGFGTPQLAEAALQANQ 318
>pdb|3L67|A Chain A, Xenobiotic Reductase A - C25s Variant
pdb|3L68|A Chain A, Xenobiotic Reductase A - C25s Variant With Coumarin
Length = 363
Score = 29.6 bits (65), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 45/112 (40%), Gaps = 9/112 (8%)
Query: 8 SRMFEAVILDCHNLFPKLAPHAFKSIDILEGDGGDGTLKRYDFEVLLNFKTGTHD--NFS 65
SR + ++P+ P + +LE DG D E+ FK G D + S
Sbjct: 208 SRFLLETLAAVREVWPENLPLTAR-FGVLEYDGRDEQTLEESIELARRFKAGGLDLLSVS 266
Query: 66 IKYTIYERDGGWG------IFEKVVYDIKFVASGDSGCIYKVAAECYLKAGE 111
+ +TI + + WG I E+V + K + G AE L+A +
Sbjct: 267 VGFTIPDTNIPWGPAFMGPIAERVRREAKLPVTSAWGFGTPQLAEAALQANQ 318
>pdb|2H8Z|A Chain A, Xenobiotic Reductase A In Complex With 8-Hydroxycoumarin
pdb|2H90|A Chain A, Xenobiotic Reductase A In Complex With Coumarin
Length = 359
Score = 29.3 bits (64), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 45/112 (40%), Gaps = 9/112 (8%)
Query: 8 SRMFEAVILDCHNLFPKLAPHAFKSIDILEGDGGDGTLKRYDFEVLLNFKTGTHD--NFS 65
SR + ++P+ P + +LE DG D E+ FK G D + S
Sbjct: 207 SRFLLETLAAVREVWPENLPLTAR-FGVLEYDGRDEQTLEESIELARRFKAGGLDLLSVS 265
Query: 66 IKYTIYERDGGWG------IFEKVVYDIKFVASGDSGCIYKVAAECYLKAGE 111
+ +TI + + WG I E+V + K + G AE L+A +
Sbjct: 266 VGFTIPDTNIPWGPAFMGPIAERVRREAKLPVTSAWGFGTPQLAEAALQANQ 317
>pdb|2H8X|A Chain A, Xenobiotic Reductase A-Oxidized
Length = 358
Score = 29.3 bits (64), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 45/112 (40%), Gaps = 9/112 (8%)
Query: 8 SRMFEAVILDCHNLFPKLAPHAFKSIDILEGDGGDGTLKRYDFEVLLNFKTGTHD--NFS 65
SR + ++P+ P + +LE DG D E+ FK G D + S
Sbjct: 206 SRFLLETLAAVREVWPENLPLTAR-FGVLEYDGRDEQTLEESIELARRFKAGGLDLLSVS 264
Query: 66 IKYTIYERDGGWG------IFEKVVYDIKFVASGDSGCIYKVAAECYLKAGE 111
+ +TI + + WG I E+V + K + G AE L+A +
Sbjct: 265 VGFTIPDTNIPWGPAFMGPIAERVRREAKLPVTSAWGFGTPQLAEAALQANQ 316
>pdb|3N16|A Chain A, Xena - Y183f
Length = 363
Score = 29.3 bits (64), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 45/112 (40%), Gaps = 9/112 (8%)
Query: 8 SRMFEAVILDCHNLFPKLAPHAFKSIDILEGDGGDGTLKRYDFEVLLNFKTGTHD--NFS 65
SR + ++P+ P + +LE DG D E+ FK G D + S
Sbjct: 208 SRFLLETLAAVREVWPENLPLTAR-FGVLEYDGRDEQTLEESIELARRFKAGGLDLLSVS 266
Query: 66 IKYTIYERDGGWG------IFEKVVYDIKFVASGDSGCIYKVAAECYLKAGE 111
+ +TI + + WG I E+V + K + G AE L+A +
Sbjct: 267 VGFTIPDTNIPWGPAFMGPIAERVRREAKLPVTSAWGFGTPQLAEAALQANQ 318
>pdb|3N14|A Chain A, Xena - W358a
Length = 363
Score = 29.3 bits (64), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 45/112 (40%), Gaps = 9/112 (8%)
Query: 8 SRMFEAVILDCHNLFPKLAPHAFKSIDILEGDGGDGTLKRYDFEVLLNFKTGTHD--NFS 65
SR + ++P+ P + +LE DG D E+ FK G D + S
Sbjct: 208 SRFLLETLAAVREVWPENLPLTAR-FGVLEYDGRDEQTLEESIELARRFKAGGLDLLSVS 266
Query: 66 IKYTIYERDGGWG------IFEKVVYDIKFVASGDSGCIYKVAAECYLKAGE 111
+ +TI + + WG I E+V + K + G AE L+A +
Sbjct: 267 VGFTIPDTNIPWGPAFMGPIAERVRREAKLPVTSAWGFGTPQLAEAALQANQ 318
>pdb|3L5L|A Chain A, Xenobiotic Reductase A - Oxidized
pdb|3L5M|A Chain A, Xenobiotic Reductase A - Coumarin Bound
pdb|3N19|B Chain B, Xena - Reduced
pdb|3N19|D Chain D, Xena - Reduced
Length = 363
Score = 29.3 bits (64), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 45/112 (40%), Gaps = 9/112 (8%)
Query: 8 SRMFEAVILDCHNLFPKLAPHAFKSIDILEGDGGDGTLKRYDFEVLLNFKTGTHD--NFS 65
SR + ++P+ P + +LE DG D E+ FK G D + S
Sbjct: 208 SRFLLETLAAVREVWPENLPLTAR-FGVLEYDGRDEQTLEESIELARRFKAGGLDLLSVS 266
Query: 66 IKYTIYERDGGWG------IFEKVVYDIKFVASGDSGCIYKVAAECYLKAGE 111
+ +TI + + WG I E+V + K + G AE L+A +
Sbjct: 267 VGFTIPDTNIPWGPAFMGPIAERVRREAKLPVTSAWGFGTPQLAEAALQANQ 318
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,546,963
Number of Sequences: 62578
Number of extensions: 193154
Number of successful extensions: 526
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 472
Number of HSP's gapped (non-prelim): 32
length of query: 144
length of database: 14,973,337
effective HSP length: 89
effective length of query: 55
effective length of database: 9,403,895
effective search space: 517214225
effective search space used: 517214225
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 46 (22.3 bits)