Query 037023
Match_columns 144
No_of_seqs 110 out of 600
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 07:49:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037023.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037023hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00407 Bet_v_1: Pathogenesis 100.0 7.3E-43 1.6E-47 258.0 14.2 134 1-139 10-151 (151)
2 cd07816 Bet_v1-like Ligand-bin 100.0 3.5E-33 7.6E-38 205.0 17.0 133 2-139 8-148 (148)
3 cd07821 PYR_PYL_RCAR_like Pyra 99.6 3.6E-14 7.8E-19 99.9 14.4 128 2-136 8-139 (140)
4 cd08866 SRPBCC_11 Ligand-bindi 99.3 1.2E-10 2.6E-15 83.2 14.1 125 2-135 6-141 (144)
5 cd07819 SRPBCC_2 Ligand-bindin 99.2 7.6E-10 1.6E-14 78.1 14.6 100 2-109 9-114 (140)
6 cd08861 OtcD1_ARO-CYC_like N-t 99.2 5.9E-10 1.3E-14 79.4 12.6 103 1-110 5-113 (142)
7 PF10604 Polyketide_cyc2: Poly 99.2 4.7E-09 1E-13 73.7 15.8 96 2-107 9-108 (139)
8 cd07813 COQ10p_like Coenzyme Q 99.1 9.4E-10 2E-14 78.5 10.5 100 2-110 6-110 (138)
9 cd08862 SRPBCC_Smu440-like Lig 99.0 2.3E-08 5.1E-13 70.4 13.8 98 1-107 7-107 (138)
10 cd08865 SRPBCC_10 Ligand-bindi 99.0 2.5E-08 5.5E-13 69.7 13.7 96 2-107 6-108 (140)
11 cd07812 SRPBCC START/RHO_alpha 99.0 4.5E-08 9.7E-13 66.7 13.1 102 2-110 6-113 (141)
12 cd07824 SRPBCC_6 Ligand-bindin 98.9 9.9E-08 2.1E-12 68.9 13.6 97 2-109 8-113 (146)
13 cd07822 SRPBCC_4 Ligand-bindin 98.8 3.1E-07 6.8E-12 64.3 14.3 98 2-107 7-111 (141)
14 cd07818 SRPBCC_1 Ligand-bindin 98.8 2.1E-07 4.5E-12 66.9 13.5 101 2-109 9-118 (150)
15 cd05018 CoxG Carbon monoxide d 98.8 3.8E-07 8.2E-12 64.5 13.2 102 2-110 8-115 (144)
16 cd07814 SRPBCC_CalC_Aha1-like 98.8 1.1E-07 2.5E-12 66.8 10.4 125 1-136 6-137 (139)
17 cd07817 SRPBCC_8 Ligand-bindin 98.8 3.2E-07 6.9E-12 64.6 12.5 97 1-109 6-107 (139)
18 PF03364 Polyketide_cyc: Polyk 98.8 4.5E-07 9.7E-12 63.6 13.0 100 3-111 1-107 (130)
19 cd07820 SRPBCC_3 Ligand-bindin 98.7 2.2E-07 4.9E-12 66.4 10.5 98 1-107 5-111 (137)
20 cd07825 SRPBCC_7 Ligand-bindin 98.7 4.5E-07 9.7E-12 64.6 12.0 128 2-136 7-143 (144)
21 cd08860 TcmN_ARO-CYC_like N-te 98.6 3.5E-06 7.5E-11 61.7 14.2 102 1-111 7-116 (146)
22 cd07823 SRPBCC_5 Ligand-bindin 98.5 3.2E-06 6.9E-11 61.0 12.1 102 1-110 5-116 (146)
23 PRK10724 hypothetical protein; 98.5 2.1E-06 4.6E-11 63.8 11.1 99 2-109 22-125 (158)
24 PF06240 COXG: Carbon monoxide 98.3 1.8E-05 4E-10 57.1 11.0 127 1-136 3-139 (140)
25 COG3427 Carbon monoxide dehydr 98.2 1.7E-05 3.7E-10 58.3 10.1 128 1-138 7-145 (146)
26 cd08898 SRPBCC_CalC_Aha1-like_ 98.0 6.5E-05 1.4E-09 53.2 9.0 127 1-137 7-144 (145)
27 cd08899 SRPBCC_CalC_Aha1-like_ 98.0 0.00015 3.4E-09 53.1 10.8 117 2-140 18-139 (157)
28 COG5637 Predicted integral mem 98.0 3.5E-05 7.6E-10 58.5 7.3 96 1-109 76-178 (217)
29 cd08897 SRPBCC_CalC_Aha1-like_ 97.7 0.00099 2.2E-08 47.2 11.5 116 2-137 7-132 (133)
30 cd08893 SRPBCC_CalC_Aha1-like_ 97.7 0.00093 2E-08 46.6 10.8 123 1-136 6-134 (136)
31 PF08327 AHSA1: Activator of H 97.7 0.00098 2.1E-08 45.8 10.4 117 4-136 1-123 (124)
32 cd08895 SRPBCC_CalC_Aha1-like_ 97.6 0.0091 2E-07 42.8 14.9 124 2-137 7-145 (146)
33 cd08900 SRPBCC_CalC_Aha1-like_ 97.6 0.0072 1.6E-07 43.2 13.8 126 2-137 7-142 (143)
34 cd07826 SRPBCC_CalC_Aha1-like_ 97.5 0.0026 5.6E-08 45.7 11.3 127 2-137 7-141 (142)
35 cd08894 SRPBCC_CalC_Aha1-like_ 97.5 0.0018 3.8E-08 46.2 10.3 120 2-137 7-138 (139)
36 cd08896 SRPBCC_CalC_Aha1-like_ 97.5 0.0054 1.2E-07 44.1 12.1 123 2-137 7-145 (146)
37 PTZ00220 Activator of HSP-90 A 97.4 0.0019 4.2E-08 46.2 9.4 120 3-136 1-126 (132)
38 cd08876 START_1 Uncharacterize 97.4 0.01 2.3E-07 44.5 13.2 129 2-135 48-193 (195)
39 cd08901 SRPBCC_CalC_Aha1-like_ 97.2 0.004 8.6E-08 44.3 9.2 119 2-138 7-132 (136)
40 cd08892 SRPBCC_Aha1 Putative h 97.0 0.011 2.4E-07 41.6 9.5 114 2-136 7-124 (126)
41 cd08891 SRPBCC_CalC Ligand-bin 97.0 0.025 5.4E-07 40.7 11.5 123 2-136 7-147 (149)
42 COG2867 Oligoketide cyclase/li 96.5 0.011 2.4E-07 43.4 6.4 98 3-109 10-113 (146)
43 COG3832 Uncharacterized conser 96.1 0.22 4.8E-06 36.2 11.6 127 2-137 15-148 (149)
44 cd08873 START_STARD14_15-like 93.3 3.4 7.4E-05 32.7 13.6 132 2-139 84-235 (235)
45 cd08868 START_STARD1_3_like Ch 92.7 3.4 7.4E-05 31.4 12.9 134 2-138 55-207 (208)
46 cd00177 START Lipid-binding ST 90.1 5.7 0.00012 28.7 14.0 107 2-111 46-168 (193)
47 cd08905 START_STARD1-like Chol 89.2 8.3 0.00018 29.5 10.8 132 2-137 56-207 (209)
48 cd08874 START_STARD9-like C-te 88.8 9.2 0.0002 29.5 12.8 111 2-115 52-183 (205)
49 cd08863 SRPBCC_DUF1857 DUF1857 88.7 7.6 0.00017 28.4 14.5 110 5-130 17-129 (141)
50 cd08913 START_STARD14-like Lip 85.6 16 0.00035 28.9 12.3 133 2-139 88-240 (240)
51 PF08982 DUF1857: Domain of un 81.6 18 0.0004 26.5 9.8 90 4-108 17-108 (149)
52 smart00234 START in StAR and p 80.4 21 0.00046 26.5 14.6 133 2-138 52-202 (206)
53 PF11687 DUF3284: Domain of un 78.1 21 0.00045 25.0 8.4 95 2-109 6-104 (120)
54 cd08871 START_STARD10-like Lip 76.0 33 0.00071 26.2 11.7 130 4-138 57-202 (222)
55 PF11485 DUF3211: Protein of u 74.6 8.4 0.00018 28.1 4.8 33 3-38 9-41 (136)
56 cd08914 START_STARD15-like Lip 74.6 41 0.00089 26.7 12.6 131 2-138 85-235 (236)
57 cd08903 START_STARD5-like Lipi 74.4 36 0.00078 25.9 13.4 132 2-137 53-206 (208)
58 cd08906 START_STARD3-like Chol 68.2 52 0.0011 25.2 13.2 130 2-137 56-207 (209)
59 cd08911 START_STARD7-like Lipi 67.0 54 0.0012 24.9 12.5 128 4-137 55-205 (207)
60 cd08870 START_STARD2_7-like Li 66.0 56 0.0012 24.8 13.5 129 4-137 60-207 (209)
61 cd08877 START_2 Uncharacterize 63.3 63 0.0014 24.5 10.7 130 2-136 53-212 (215)
62 PF01852 START: START domain; 59.1 69 0.0015 23.5 13.3 132 2-140 53-204 (206)
63 KOG0301 Phospholipase A2-activ 54.5 42 0.00092 30.7 6.2 46 26-72 178-229 (745)
64 PRK06628 lipid A biosynthesis 50.1 33 0.00072 27.4 4.6 44 100-143 238-281 (290)
65 PF14275 DUF4362: Domain of un 49.1 47 0.001 22.8 4.5 31 40-70 28-60 (98)
66 KOG0896 Ubiquitin-conjugating 47.9 54 0.0012 23.9 4.9 13 62-74 54-66 (138)
67 PRK06553 lipid A biosynthesis 46.5 70 0.0015 25.8 6.0 44 100-143 257-300 (308)
68 KOG3177 Oligoketide cyclase/li 42.4 1.4E+02 0.003 23.5 6.7 99 3-109 76-182 (227)
69 PF03000 NPH3: NPH3 family; I 40.6 20 0.00044 28.7 2.0 16 127-142 221-236 (258)
70 cd08872 START_STARD11-like Cer 39.5 1.8E+02 0.004 22.7 10.9 128 5-139 63-227 (235)
71 TIGR02208 lipid_A_msbB lipid A 39.0 56 0.0012 26.3 4.4 40 100-143 248-287 (305)
72 PF10698 DUF2505: Protein of u 36.0 1.7E+02 0.0036 21.2 8.0 27 81-108 102-128 (159)
73 PF11979 DUF3480: Domain of un 35.3 2E+02 0.0044 24.3 7.1 65 71-137 239-308 (356)
74 PF02021 UPF0102: Uncharacteri 33.0 1.5E+02 0.0032 19.7 6.1 65 68-140 15-79 (93)
75 PRK05645 lipid A biosynthesis 32.9 81 0.0017 25.1 4.3 40 100-143 238-277 (295)
76 PF11647 PMT_C: C-terminal reg 31.1 76 0.0017 20.1 3.1 20 123-142 42-61 (66)
77 PRK06860 lipid A biosynthesis 31.1 88 0.0019 25.2 4.3 40 100-143 251-290 (309)
78 KOG0277 Peroxisomal targeting 29.6 63 0.0014 26.4 3.1 47 43-91 83-133 (311)
79 cd08910 START_STARD2-like Lipi 29.5 2.5E+02 0.0055 21.2 6.8 125 5-135 60-203 (207)
80 TIGR02207 lipid_A_htrB lipid A 29.1 97 0.0021 24.8 4.2 40 100-143 245-284 (303)
81 PRK08419 lipid A biosynthesis 29.1 1.2E+02 0.0026 24.2 4.7 22 122-143 260-281 (298)
82 PRK08943 lipid A biosynthesis 28.7 1E+02 0.0022 24.9 4.3 40 100-143 257-296 (314)
83 PRK08706 lipid A biosynthesis 27.6 99 0.0021 24.5 4.0 40 100-143 232-271 (289)
84 PRK08734 lipid A biosynthesis 27.0 1.1E+02 0.0024 24.6 4.2 21 123-143 258-278 (305)
85 PRK14681 hypothetical protein; 26.5 2.7E+02 0.0059 20.6 6.6 69 66-141 60-128 (158)
86 cd07984 LPLAT_LABLAT-like Lyso 26.5 1.3E+02 0.0029 21.6 4.3 22 122-143 163-184 (192)
87 COG2122 Uncharacterized conser 25.8 94 0.002 24.8 3.4 29 114-142 30-58 (256)
88 PRK08733 lipid A biosynthesis 25.5 1.3E+02 0.0028 24.2 4.4 40 100-143 248-287 (306)
89 PF08473 VGCC_alpha2: Neuronal 25.0 1.7E+02 0.0038 19.9 4.1 19 57-75 37-55 (94)
90 PRK05646 lipid A biosynthesis 24.2 1.3E+02 0.0028 24.2 4.1 40 100-143 249-288 (310)
91 PF03279 Lip_A_acyltrans: Bact 23.8 2.6E+02 0.0057 22.0 5.8 41 99-143 246-286 (295)
92 KOG2445 Nuclear pore complex c 23.7 1.8E+02 0.0039 24.4 4.8 17 90-106 304-320 (361)
93 PRK08905 lipid A biosynthesis 22.2 1.4E+02 0.0031 23.8 4.0 39 100-143 227-265 (289)
94 PRK06946 lipid A biosynthesis 21.9 1.7E+02 0.0036 23.4 4.3 21 123-143 255-275 (293)
95 cd08869 START_RhoGAP C-termina 21.7 3.5E+02 0.0076 20.2 11.3 104 2-112 51-172 (197)
96 PF13410 GST_C_2: Glutathione 21.3 1.6E+02 0.0035 17.4 3.3 23 118-140 4-26 (69)
97 KOG0282 mRNA splicing factor [ 21.1 2.8E+02 0.0061 24.5 5.6 46 29-74 344-418 (503)
98 PF01050 MannoseP_isomer: Mann 21.1 1.5E+02 0.0032 21.7 3.5 33 43-75 63-95 (151)
99 PF11164 DUF2948: Protein of u 20.0 2.4E+02 0.0052 20.6 4.4 27 30-57 87-113 (138)
No 1
>PF00407 Bet_v_1: Pathogenesis-related protein Bet v I family; InterPro: IPR000916 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Aln g 1, Api g 1, Bet v 1, Car b 1, Cor a 1, Dau c 1, Mal d 1 and Pru a 1. Trees within the order Fagales possess particularly potent allergens, e.g. Bet v1, the major White Birch (Betula verrucosa) pollen antigen. Bet v1 is the main cause of type I allergies observed in early spring. Type I, or immunoglobulin E-mediated (IgE-mediated) allergies affect 1 in 5 people in Europe and North America. Commonly-observed symptoms are hay fever, dermatitis, asthma and, in severe cases, anaphylactic shock. First contact with these allergens results in sensitisation; subsequent contact produces a cross-linking reaction of IgE on mast cells and concomitant release of histamine. The inevitable symptoms of an allergic reaction ensue. Recent NMR analysis [] has confirmed earlier predictions of the protein structure and site of the major T-cell epitope []. The Bet v1 protein comprises 6 anti-parallel beta-strands and 3 alpha-helices. Four of the strands dominate the global fold, and 2 of the helices form a C-terminal amphipathic helical motif. This motif is believed to be the T-cell epitope. Other proteins belonging to this family include the major pollen allergens: Aln g I from Alnus glutinosa (Alder); Api G I from Apium graveolens (Celery); Car b I from Carpinus betulus (European hornbeam); Cor a I from Corylus avellana (European hazel); Mal d I from Malus domestica (Apple). The motif is also found in: the wound-induced protein AoPR1 from Asparagus officinalis (Garden asparagus); pathogenesis-related proteins from Phaseolus vulgaris (Kidney bean) and Petroselinum crispum (Parsley) (PR1-1 and PR1-3); the disease resistance response proteins, STH-2 and STH-21, from Solanum tuberosum (Potato) and pI49, pI176 and DRRG49-C from Pisum sativum (Garden pea); the P. sativum abscisic acid-responsive proteins ABR17 and ABR18; and the stress-induced protein SAM22 from Glycine max (Soybean). ; GO: 0006952 defense response, 0009607 response to biotic stimulus; PDB: 1IFV_A 4A8V_A 4A8U_A 2K7H_A 2QIM_A 3E85_A 1H2O_A 1E09_A 1QMR_A 1FSK_D ....
Probab=100.00 E-value=7.3e-43 Score=257.97 Aligned_cols=134 Identities=31% Similarity=0.506 Sum_probs=122.9
Q ss_pred CccccCHHHHHHHHhhccccccccccCcceeEEEEecCCCCCC-cEEEEEeecCceeeEEee-------eceEEEEEEEe
Q 037023 1 VPAAVAPSRMFEAVILDCHNLFPKLAPHAFKSIDILEGDGGDG-TLKRYDFEVLLNFKTGTH-------DNFSIKYTIYE 72 (144)
Q Consensus 1 ~~~~~~a~k~w~~~~~d~~~llpk~~P~~i~sve~~eGdG~~G-sir~l~~~~g~~~~~~ke-------~~~~~~y~vie 72 (144)
+++++||+|+|++|+ +.++++||++|+.|+|||++||||++| |||+|+|.+|++..++|| +||+++|++||
T Consensus 10 ~~~~~~a~k~~ka~~-~~~~llpki~P~~i~sve~~eGdgg~gGSIk~~~f~~~~~~~~~Kekve~~D~~~~~~~y~viE 88 (151)
T PF00407_consen 10 VEVKVSADKLWKAFK-SSPHLLPKILPHVIKSVEVVEGDGGPGGSIKKWTFGPGGPFKYVKEKVEAIDEENKTITYTVIE 88 (151)
T ss_dssp EEESS-HHHHHHHHT-THHHHHHHHSTTTEEEEEEEESSSSTTT-EEEEEEETTSSEEEEEEEEEEEETTTTEEEEEEEE
T ss_pred EEecCCHHHHHHHHh-cCccchhhhChhhceeEEEEccCCCCCCeEEEEEecCCCCcceeEEEEEeecCCCcEEEEEEEe
Confidence 368999999999996 688899999999999999999999888 999999999999888998 88999999999
Q ss_pred cCCCccceEEEEEEEEEEEcCCCceEEEEEEEEEEcCCCCCChhhhhhHHHHHHHHHHHHHHHHhhC
Q 037023 73 RDGGWGIFEKVVYDIKFVASGDSGCIYKVAAECYLKAGEESKQEFVKDSQEKGTSLYRAVESHLLAN 139 (144)
Q Consensus 73 G~~l~~~~~s~~~~~~v~p~~~ggs~v~w~~~ye~~~~~~~~~~~~~~~~~~~~~~~k~ie~yl~~~ 139 (144)
||+|. .|++|..++++.|+++|+|+++|+++||+++++.|+|+.+. +++..|+|+||+||++|
T Consensus 89 Gd~l~-~~~~~~~~~~~~~~~~g~~v~k~t~~Ye~~~~~~~~p~~~~---~~~~~~~K~ieayLlan 151 (151)
T PF00407_consen 89 GDVLG-DYKSFKSTIQKIPKGDGGCVVKWTIEYEKKGEDVPPPEKYL---DFAVGMFKAIEAYLLAN 151 (151)
T ss_dssp ETTGT-TTEEEEEEEEEEEETTSCEEEEEEEEEEESSTSCHHHHHHH---HHHHHHHHHHHHHHHHT
T ss_pred ccccc-cEEEEEEEEEecCCCCCceEEEEEEEEEecCCCCCCcHHHH---HHHHHHHHHHHHHHhcC
Confidence 99985 89999999999999999999999999999999887787665 78999999999999998
No 2
>cd07816 Bet_v1-like Ligand-binding bet_v_1 domain of major pollen allergen of white birch (Betula verrucosa), Bet v 1, and related proteins. This family includes the ligand binding domain of Bet v 1 (the major pollen allergen of white birch, Betula verrucosa) and related proteins. In addition to birch Bet v 1, this family includes other plant intracellular pathogenesis-related class 10 (PR-10) proteins, norcoclaurine synthases (NCSs), cytokinin binding proteins (CSBPs), major latex proteins (MLPs), and ripening-related proteins. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Members of this family binds a diverse range of ligands. Bet v 1 can bind brassinosteroids, cytokinins, flavonoids and fatty acids. Hyp-1, a PR-10 from Hypericum perforatum/St. John's wort, catalyzes the condensation of two molecules of emodin to the bioactive naphthodianth
Probab=100.00 E-value=3.5e-33 Score=204.95 Aligned_cols=133 Identities=29% Similarity=0.410 Sum_probs=115.8
Q ss_pred ccccCHHHHHHHHhhccccccc-cccCcceeEEEEecCCCCCCcEEEEEeecCceeeEEee-------eceEEEEEEEec
Q 037023 2 PAAVAPSRMFEAVILDCHNLFP-KLAPHAFKSIDILEGDGGDGTLKRYDFEVLLNFKTGTH-------DNFSIKYTIYER 73 (144)
Q Consensus 2 ~~~~~a~k~w~~~~~d~~~llp-k~~P~~i~sve~~eGdG~~Gsir~l~~~~g~~~~~~ke-------~~~~~~y~vieG 73 (144)
+++||||++|++++ |+.+.+| .|+| .|++|++++|||++||||.|+|.+|++...++| ++|+++|+++||
T Consensus 8 ~i~a~ad~vW~~~~-~~~~~~~~~~~p-~v~~~~~~eG~~~~GsvR~~~~~~~~~~~~~kE~l~~~D~~~~~~~y~vveg 85 (148)
T cd07816 8 ELKVPAEKLWKAFV-LDSHLLPPKLPP-VIKSVELLEGDGGPGSIKLITFGPGGKVKYVKERIDAVDEENKTYKYTVIEG 85 (148)
T ss_pred EecCCHHHHHHHHh-cChhhccccccc-cccEEEEEecCCCCceEEEEEEcCCCcceEEEEEEEEEcccccEEEEEEEec
Confidence 68999999999995 8885354 5566 899999999999999999999998875555666 799999999999
Q ss_pred CCCccceEEEEEEEEEEEcCCCceEEEEEEEEEEcCCCCCChhhhhhHHHHHHHHHHHHHHHHhhC
Q 037023 74 DGGWGIFEKVVYDIKFVASGDSGCIYKVAAECYLKAGEESKQEFVKDSQEKGTSLYRAVESHLLAN 139 (144)
Q Consensus 74 ~~l~~~~~s~~~~~~v~p~~~ggs~v~w~~~ye~~~~~~~~~~~~~~~~~~~~~~~k~ie~yl~~~ 139 (144)
+++..+|++|+++++|.|.++++|+++|+++|++.+++.++|++++ +.+..+++++++|++.+
T Consensus 86 ~~~~~~~~~y~~t~~v~~~~~~~t~v~Wt~~ye~~~~~~~~p~~~~---~~~~~~~~~~~~~~~~~ 148 (148)
T cd07816 86 DVLKDGYKSYKVEIKFVPKGDGGCVVKWTIEYEKKGDAEPPEEEIK---AGKEKALKMFKAVEAYL 148 (148)
T ss_pred ccccCceEEEEEEEEEEECCCCCEEEEEEEEEEECCCCCCCHHHHH---hHHHHHHHHHHHHHhcC
Confidence 9875579999999999999888999999999999998877777776 78888899999998753
No 3
>cd07821 PYR_PYL_RCAR_like Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins. The PYR/PYL/RCAR-like family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. PYR/PYL/RCAR plant proteins are receptors involved in signal transduction. They bind abscisic acid (ABA) and mediate its signaling. ABA is a vital plant hormone, which regulates plant growth, development, and response to environmental stresses. Upon binding ABA, these plant proteins interact with a type 2C protein phosphatase (PP2C), such as ABI1 and ABI2, and inhibit their activity. When ABA is bound, a loop (designated the gate/CL2 loop) closes over the ligand binding pocket, resulting in the weakening of the inactive PYL dimer and facilitating type 2C protein phosphatase binding. In the ABA:PYL1:ABI1 complex, the gate
Probab=99.62 E-value=3.6e-14 Score=99.91 Aligned_cols=128 Identities=16% Similarity=0.129 Sum_probs=96.7
Q ss_pred ccccCHHHHHHHHhhccccccccccCcceeEEEEecCCCCCCcEEEEEeecCceee-EEee--ec-eEEEEEEEecCCCc
Q 037023 2 PAAVAPSRMFEAVILDCHNLFPKLAPHAFKSIDILEGDGGDGTLKRYDFEVLLNFK-TGTH--DN-FSIKYTIYERDGGW 77 (144)
Q Consensus 2 ~~~~~a~k~w~~~~~d~~~llpk~~P~~i~sve~~eGdG~~Gsir~l~~~~g~~~~-~~ke--~~-~~~~y~vieG~~l~ 77 (144)
++++|++++|+++. |..+ +|+|+|. ++++++++++.++|+++.+++..|..+. .+.+ .. +.+.|++.+|+.
T Consensus 8 ~i~a~~~~V~~~l~-d~~~-~~~w~~~-~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~i~~~~~~~~~i~~~~~~~~~-- 82 (140)
T cd07821 8 TIDAPADKVWALLS-DFGG-LHKWHPA-VASCELEGGGPGVGAVRTVTLKDGGTVRERLLALDDAERRYSYRIVEGPL-- 82 (140)
T ss_pred EECCCHHHHHHHHh-CcCc-hhhhccC-cceEEeecCCCCCCeEEEEEeCCCCEEEEEehhcCccCCEEEEEecCCCC--
Confidence 68999999999995 9998 7999995 8999998876568999999998664432 2222 33 889999998742
Q ss_pred cceEEEEEEEEEEEcCCCceEEEEEEEEEEcCCCCCChhhhhhHHHHHHHHHHHHHHHH
Q 037023 78 GIFEKVVYDIKFVASGDSGCIYKVAAECYLKAGEESKQEFVKDSQEKGTSLYRAVESHL 136 (144)
Q Consensus 78 ~~~~s~~~~~~v~p~~~ggs~v~w~~~ye~~~~~~~~~~~~~~~~~~~~~~~k~ie~yl 136 (144)
.+.++..+++|+|.++|+|.++|+.+|+..+. .+.+..-....+.....++.|+++|
T Consensus 83 -~~~~~~~~~~~~~~~~~~t~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~L~~~~ 139 (140)
T cd07821 83 -PVKNYVATIRVTPEGDGGTRVTWTAEFDPPEG-LTDELARAFLTGVYRAGLAALKAAL 139 (140)
T ss_pred -CcccceEEEEEEECCCCccEEEEEEEEecCCC-cchHHHHHHHHHHHHHHHHHHHHhh
Confidence 36677899999998877899999999999875 3333322333455566667777665
No 4
>cd08866 SRPBCC_11 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.31 E-value=1.2e-10 Score=83.22 Aligned_cols=125 Identities=13% Similarity=0.149 Sum_probs=81.7
Q ss_pred ccccCHHHHHHHHhhccccccccccCcceeEEEEecCCCCC------CcEEEEEeecCceee-EEee---eceEEEEEEE
Q 037023 2 PAAVAPSRMFEAVILDCHNLFPKLAPHAFKSIDILEGDGGD------GTLKRYDFEVLLNFK-TGTH---DNFSIKYTIY 71 (144)
Q Consensus 2 ~~~~~a~k~w~~~~~d~~~llpk~~P~~i~sve~~eGdG~~------Gsir~l~~~~g~~~~-~~ke---~~~~~~y~vi 71 (144)
.+++|++++|+++. |+.+ +|+|+|+ ++++++++++|.- |..+.+...-.+.+. .+.+ .++.+.|+++
T Consensus 6 ~i~a~~~~Vw~~l~-D~~~-~~~w~p~-v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~ 82 (144)
T cd08866 6 RVPAPPETVWAVLT-DYDN-LAEFIPN-LAESRLLERNGNRVVLEQTGKQGILFFKFEARVVLELREREEFPRELDFEMV 82 (144)
T ss_pred EECCCHHHHHHHHh-Chhh-HHhhCcC-ceEEEEEEcCCCEEEEEEeeeEEEEeeeeeEEEEEEEEEecCCCceEEEEEc
Confidence 58999999999995 9999 7999996 9999998775311 111111111112221 2233 2789999998
Q ss_pred ecCCCccceEEEEEEEEEEEcCC-CceEEEEEEEEEEcCCCCCChhhhhhHHHHHHHHHHHHHHH
Q 037023 72 ERDGGWGIFEKVVYDIKFVASGD-SGCIYKVAAECYLKAGEESKQEFVKDSQEKGTSLYRAVESH 135 (144)
Q Consensus 72 eG~~l~~~~~s~~~~~~v~p~~~-ggs~v~w~~~ye~~~~~~~~~~~~~~~~~~~~~~~k~ie~y 135 (144)
+|+ +..+..+.+++|.++ ++|.++|.+.+++...- |.+-.-....+.+..++++|.+.
T Consensus 83 ~g~-----~~~~~g~w~~~~~~~~~~t~v~~~~~~~~~~~~-p~~l~~~~~~~~~~~~l~~lr~~ 141 (144)
T cd08866 83 EGD-----FKRFEGSWRLEPLADGGGTLLTYEVEVKPDFFA-PVFLVEFVLRQDLPTNLLAIRAE 141 (144)
T ss_pred CCc-----hhceEEEEEEEECCCCCeEEEEEEEEEEeCCCC-CHHHHHHHHHHHHHHHHHHHHHH
Confidence 774 567789999999887 68999999999987632 22211111223344555555543
No 5
>cd07819 SRPBCC_2 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.24 E-value=7.6e-10 Score=78.09 Aligned_cols=100 Identities=17% Similarity=0.252 Sum_probs=73.6
Q ss_pred ccccCHHHHHHHHhhccccccccccCcceeEEEEecCC-CCCCcEEEEEeecCc-eeeEEee----eceEEEEEEEecCC
Q 037023 2 PAAVAPSRMFEAVILDCHNLFPKLAPHAFKSIDILEGD-GGDGTLKRYDFEVLL-NFKTGTH----DNFSIKYTIYERDG 75 (144)
Q Consensus 2 ~~~~~a~k~w~~~~~d~~~llpk~~P~~i~sve~~eGd-G~~Gsir~l~~~~g~-~~~~~ke----~~~~~~y~vieG~~ 75 (144)
.+++|++++|+++. |..+ +|+|+|. +.++++++++ ++.+....+++..++ ...+.-+ ..+.++|+..+|.
T Consensus 9 ~i~ap~e~V~~~l~-D~~~-~~~w~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~- 84 (140)
T cd07819 9 EIEAPPAAVMDVLA-DVEA-YPEWSPK-VKSVEVLLRDNDGRPEMVRIGVGAYGIKDTYALEYTWDGAGSVSWTLVEGE- 84 (140)
T ss_pred EEeCCHHHHHHHHh-Chhh-hhhhCcc-eEEEEEeccCCCCCEEEEEEEEeeeeEEEEEEEEEEEcCCCcEEEEEeccc-
Confidence 68999999999995 9999 8999996 9999987654 333334445554332 1112112 4567999998875
Q ss_pred CccceEEEEEEEEEEEcCCCceEEEEEEEEEEcC
Q 037023 76 GWGIFEKVVYDIKFVASGDSGCIYKVAAECYLKA 109 (144)
Q Consensus 76 l~~~~~s~~~~~~v~p~~~ggs~v~w~~~ye~~~ 109 (144)
...++..+.+++|.++ +|.++|..+++..+
T Consensus 85 ---~~~~~~~~~~~~~~~~-~t~vt~~~~~~~~~ 114 (140)
T cd07819 85 ---GNRSQEGSYTLTPKGD-GTRVTFDLTVELTV 114 (140)
T ss_pred ---ceeEEEEEEEEEECCC-CEEEEEEEEEEecC
Confidence 3667778899999876 79999999999866
No 6
>cd08861 OtcD1_ARO-CYC_like N-terminal and C-terminal aromatase/cyclase domains of Streptomyces rimosus OtcD1 and related domains. This family includes the N- and C- terminal aromatase/cyclase (ARO/CYC) domains of Streptomyces rimosus OtcD1 and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, didomain and monodomain. Didomain aromatase/cyclases (ARO/CYCs), contain two ARO/CYC domains, and are associated with C7-C12 first ring cyclized polyketides. Streptomyces rimosus OtcD1 is a didomain ARO/CYC. The polyketide Oxytetracycline (OTC) is a broad spectrum antibiotic made by Streptomyces rimosus. The gene encoding OtcD1 is part of oxytetracycline (OTC) gene cluster. Disruption of this
Probab=99.20 E-value=5.9e-10 Score=79.45 Aligned_cols=103 Identities=17% Similarity=0.219 Sum_probs=75.0
Q ss_pred CccccCHHHHHHHHhhccccccccccCcceeEEEEecCCCCCCcEEEEEee-cCceeeEEe--e---eceEEEEEEEecC
Q 037023 1 VPAAVAPSRMFEAVILDCHNLFPKLAPHAFKSIDILEGDGGDGTLKRYDFE-VLLNFKTGT--H---DNFSIKYTIYERD 74 (144)
Q Consensus 1 ~~~~~~a~k~w~~~~~d~~~llpk~~P~~i~sve~~eGdG~~Gsir~l~~~-~g~~~~~~k--e---~~~~~~y~vieG~ 74 (144)
++|++|++++|+++. |+.+ .|+|+|. .+++.++++++...++.+... .|....+.. + +.+.+.|..+++.
T Consensus 5 ~~i~ap~~~V~~~l~-D~~~-~p~~~p~--~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~ 80 (142)
T cd08861 5 VTVAAPAEDVYDLLA-DAER-WPEFLPT--VHVERLELDGGVERLRMWATAFDGSVHTWTSRRVLDPEGRRIVFRQEEPP 80 (142)
T ss_pred EEEcCCHHHHHHHHH-hHHh-hhccCCC--ceEEEEEEcCCEEEEEEEEEcCCCcEEEEEEEEEEcCCCCEEEEEEeeCC
Confidence 368999999999995 9999 8999996 666666654322345656665 344333211 1 4678999988754
Q ss_pred CCccceEEEEEEEEEEEcCCCceEEEEEEEEEEcCC
Q 037023 75 GGWGIFEKVVYDIKFVASGDSGCIYKVAAECYLKAG 110 (144)
Q Consensus 75 ~l~~~~~s~~~~~~v~p~~~ggs~v~w~~~ye~~~~ 110 (144)
. .+..+..+.+|+|.++++|.|+|..+|+....
T Consensus 81 ~---~~~~~~g~w~~~~~~~~~t~Vt~~~~~~~~~~ 113 (142)
T cd08861 81 P---PVASMSGEWRFEPLGGGGTRVTLRHDFTLGID 113 (142)
T ss_pred C---ChhhheeEEEEEECCCCcEEEEEEEEEEECCC
Confidence 3 25666778899998878899999999998864
No 7
>PF10604 Polyketide_cyc2: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR019587 This family contains polyketide cylcases/dehydrases which are enzymes involved in polyketide synthesis. It also includes other proteins of the START superfamily []. ; PDB: 3QRZ_C 3CNW_A 3P9V_A 3OQU_B 3NEF_B 3JRQ_B 3KAY_A 3JRS_A 3KDJ_A 3NMN_C ....
Probab=99.17 E-value=4.7e-09 Score=73.66 Aligned_cols=96 Identities=20% Similarity=0.252 Sum_probs=71.3
Q ss_pred ccccCHHHHHHHHhhccccccccccCcceeEEEEecCCCCCCcEEEEEeecCceee-EEee--e-ceEEEEEEEecCCCc
Q 037023 2 PAAVAPSRMFEAVILDCHNLFPKLAPHAFKSIDILEGDGGDGTLKRYDFEVLLNFK-TGTH--D-NFSIKYTIYERDGGW 77 (144)
Q Consensus 2 ~~~~~a~k~w~~~~~d~~~llpk~~P~~i~sve~~eGdG~~Gsir~l~~~~g~~~~-~~ke--~-~~~~~y~vieG~~l~ 77 (144)
.|++|++++|+.+. |+.+ +|+|.|. +.++++++|+ ++|..+.++...-..+. .+.+ . ++.+.|++. .
T Consensus 9 ~v~a~~e~V~~~l~-d~~~-~~~w~~~-~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~~---~-- 79 (139)
T PF10604_consen 9 EVPAPPEAVWDLLS-DPEN-WPRWWPG-VKSVELLSGG-GPGTERTVRVAGRGTVREEITEYDPEPRRITWRFV---P-- 79 (139)
T ss_dssp EESS-HHHHHHHHT-TTTG-GGGTSTT-EEEEEEEEEC-STEEEEEEEECSCSEEEEEEEEEETTTTEEEEEEE---S--
T ss_pred EECCCHHHHHHHHh-Chhh-hhhhhhc-eEEEEEcccc-ccceeEEEEeccccceeEEEEEecCCCcEEEEEEE---e--
Confidence 68999999999995 9998 7999995 9999988744 34655666643213332 2223 3 899999996 2
Q ss_pred cceEEEEEEEEEEEcCCCceEEEEEEEEEE
Q 037023 78 GIFEKVVYDIKFVASGDSGCIYKVAAECYL 107 (144)
Q Consensus 78 ~~~~s~~~~~~v~p~~~ggs~v~w~~~ye~ 107 (144)
..+..+..+++++|.++| |.++|+.+|+.
T Consensus 80 ~~~~~~~~~~~~~~~~~g-t~v~~~~~~~~ 108 (139)
T PF10604_consen 80 SGFTNGTGRWRFEPVGDG-TRVTWTVEFEP 108 (139)
T ss_dssp SSSCEEEEEEEEEEETTT-EEEEEEEEEEE
T ss_pred cceeEEEEEEEEEEcCCC-EEEEEEEEEEE
Confidence 245567889999998855 99999999998
No 8
>cd07813 COQ10p_like Coenzyme Q-binding protein COQ10p and similar proteins. Coenzyme Q-binding protein COQ10p and similar proteins. COQ10p is a hydrophobic protein located in the inner membrane of mitochondria that binds coenzyme Q (CoQ), also called ubiquinone, which is an essential electron carrier of the respiratory chain. Deletion of the gene encoding COQ10p (COQ10 or YOL008W) in Saccharomyces cerevisiae results in respiratory defect because of the inability to oxidize NADH and succinate. COQ10p may function in the delivery of CoQ (Q6 in budding yeast) to its proper location for electron transport. The human homolog, called Q-binding protein COQ10 homolog A (COQ10A), is able to fully complement for the absence of COQ10p in fission yeast. Human COQ10A also has a splice variant COQ10B. COQ10p belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and the
Probab=99.12 E-value=9.4e-10 Score=78.49 Aligned_cols=100 Identities=18% Similarity=0.263 Sum_probs=76.3
Q ss_pred ccccCHHHHHHHHhhccccccccccCcceeEEEEecCCCCCCcEEEEEeecCc-eeeEEee----eceEEEEEEEecCCC
Q 037023 2 PAAVAPSRMFEAVILDCHNLFPKLAPHAFKSIDILEGDGGDGTLKRYDFEVLL-NFKTGTH----DNFSIKYTIYERDGG 76 (144)
Q Consensus 2 ~~~~~a~k~w~~~~~d~~~llpk~~P~~i~sve~~eGdG~~Gsir~l~~~~g~-~~~~~ke----~~~~~~y~vieG~~l 76 (144)
.+++|++.+|+++. |..+ +|+|+|. +++++++++++ .+....++..-++ ...+.-+ .++.+++..++|+
T Consensus 6 ~i~ap~~~v~~~i~-D~~~-~~~~~p~-~~~~~vl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~-- 79 (138)
T cd07813 6 LVPYSAEQMFDLVA-DVER-YPEFLPW-CTASRVLERDE-DELEAELTVGFGGIRESFTSRVTLVPPESIEAELVDGP-- 79 (138)
T ss_pred EcCCCHHHHHHHHH-HHHh-hhhhcCC-ccccEEEEcCC-CEEEEEEEEeeccccEEEEEEEEecCCCEEEEEecCCC--
Confidence 68999999999995 9999 8999995 99999998775 3444445554332 2222111 5667888888873
Q ss_pred ccceEEEEEEEEEEEcCCCceEEEEEEEEEEcCC
Q 037023 77 WGIFEKVVYDIKFVASGDSGCIYKVAAECYLKAG 110 (144)
Q Consensus 77 ~~~~~s~~~~~~v~p~~~ggs~v~w~~~ye~~~~ 110 (144)
++.+..+.+++|.++|+|.++|.+.|++.+.
T Consensus 80 ---~~~~~g~w~~~p~~~~~T~v~~~~~~~~~~~ 110 (138)
T cd07813 80 ---FKHLEGEWRFKPLGENACKVEFDLEFEFKSR 110 (138)
T ss_pred ---hhhceeEEEEEECCCCCEEEEEEEEEEECCH
Confidence 5566789999999988999999999999863
No 9
>cd08862 SRPBCC_Smu440-like Ligand-binding SRPBCC domain of Streptococcus mutans Smu.440 and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Streptococcus mutans Smu.440 and related proteins. This domain belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Streptococcus mutans is a dental pathogen, and the leading cause of dental caries. In this pathogen, the gene encoding Smu.440 is in the same operon as the gene encoding SMU.441, a member of the MarR protein family of transcriptional regulators involved in multiple antibiotic resistance. It has been suggested that SMU.440 is involved in polyketide-like antibiotic resistance.
Probab=99.01 E-value=2.3e-08 Score=70.36 Aligned_cols=98 Identities=17% Similarity=0.172 Sum_probs=69.2
Q ss_pred CccccCHHHHHHHHhhccccccccccCcceeEEEEecCCCCCCcEEEEEeecCceee-EEee--eceEEEEEEEecCCCc
Q 037023 1 VPAAVAPSRMFEAVILDCHNLFPKLAPHAFKSIDILEGDGGDGTLKRYDFEVLLNFK-TGTH--DNFSIKYTIYERDGGW 77 (144)
Q Consensus 1 ~~~~~~a~k~w~~~~~d~~~llpk~~P~~i~sve~~eGdG~~Gsir~l~~~~g~~~~-~~ke--~~~~~~y~vieG~~l~ 77 (144)
+.|++|++++|+++. |+.+ +|+|+|+ +++++..++..++|+...++...+..+. .+.+ ..+.+.++... +
T Consensus 7 ~~i~Ap~~~Vw~~~~-d~~~-~~~w~~~-~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~p~~~~~~~~~~-~--- 79 (138)
T cd08862 7 IVIDAPPERVWAVLT-DVEN-WPAWTPS-VETVRLEGPPPAVGSSFKMKPPGLVRSTFTVTELRPGHSFTWTGPA-P--- 79 (138)
T ss_pred EEEcCCHHHHHHHHH-hhhh-cccccCc-ceEEEEecCCCCCCcEEEEecCCCCceEEEEEEecCCCEEEEEecC-C---
Confidence 368999999999995 9998 7999995 8999987553267876666654333332 2333 56667776532 2
Q ss_pred cceEEEEEEEEEEEcCCCceEEEEEEEEEE
Q 037023 78 GIFEKVVYDIKFVASGDSGCIYKVAAECYL 107 (144)
Q Consensus 78 ~~~~s~~~~~~v~p~~~ggs~v~w~~~ye~ 107 (144)
......+++|++.++++|.++|+.+|..
T Consensus 80 --~~~~~~~~~~~~~~~~~t~l~~~~~~~~ 107 (138)
T cd08862 80 --GISAVHRHEFEAKPDGGVRVTTSESLSG 107 (138)
T ss_pred --CEEEEEEEEEEEcCCCcEEEEEEEEeec
Confidence 1234578888987767899999888874
No 10
>cd08865 SRPBCC_10 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.01 E-value=2.5e-08 Score=69.74 Aligned_cols=96 Identities=16% Similarity=0.092 Sum_probs=71.7
Q ss_pred ccccCHHHHHHHHhhccccccccccCcceeEEEEecCC-CCCCcEEEEEeecC-ceee---EEee--eceEEEEEEEecC
Q 037023 2 PAAVAPSRMFEAVILDCHNLFPKLAPHAFKSIDILEGD-GGDGTLKRYDFEVL-LNFK---TGTH--DNFSIKYTIYERD 74 (144)
Q Consensus 2 ~~~~~a~k~w~~~~~d~~~llpk~~P~~i~sve~~eGd-G~~Gsir~l~~~~g-~~~~---~~ke--~~~~~~y~vieG~ 74 (144)
.|++|++++|+++. |+.+ +|+|.|. +.+++.+.++ .++|+...+....+ .+.. .+.+ .++.+.|...+|
T Consensus 6 ~i~ap~~~Vw~~l~-d~~~-~~~w~~~-~~~~~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~v~~~~p~~~~~~~~~~~- 81 (140)
T cd08865 6 VIERPVEEVFAYLA-DFEN-APEWDPG-VVEVEKITDGPVGVGTRYHQVRKFLGRRIELTYEITEYEPGRRVVFRGSSG- 81 (140)
T ss_pred EEcCCHHHHHHHHH-Cccc-hhhhccC-ceEEEEcCCCCCcCccEEEEEEEecCceEEEEEEEEEecCCcEEEEEecCC-
Confidence 58999999999995 9998 7999996 7888877544 36788888776533 3321 2233 778888888655
Q ss_pred CCccceEEEEEEEEEEEcCCCceEEEEEEEEEE
Q 037023 75 GGWGIFEKVVYDIKFVASGDSGCIYKVAAECYL 107 (144)
Q Consensus 75 ~l~~~~~s~~~~~~v~p~~~ggs~v~w~~~ye~ 107 (144)
++ .+..+++++|.++ +|.++|+.+|..
T Consensus 82 ~~-----~~~~~~~~~~~~~-~t~v~~~~~~~~ 108 (140)
T cd08865 82 PF-----PYEDTYTFEPVGG-GTRVRYTAELEP 108 (140)
T ss_pred Cc-----ceEEEEEEEEcCC-ceEEEEEEEEcc
Confidence 22 2467888888764 699999999987
No 11
>cd07812 SRPBCC START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket; they bind diverse ligands. Included in this superfamily are the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), as well as the SRPBCC domains of phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of this superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=98.96 E-value=4.5e-08 Score=66.66 Aligned_cols=102 Identities=16% Similarity=0.230 Sum_probs=74.0
Q ss_pred ccccCHHHHHHHHhhccccccccccCcceeEEEEecCC-CCCCcEEEEEeecCceee---EEee--eceEEEEEEEecCC
Q 037023 2 PAAVAPSRMFEAVILDCHNLFPKLAPHAFKSIDILEGD-GGDGTLKRYDFEVLLNFK---TGTH--DNFSIKYTIYERDG 75 (144)
Q Consensus 2 ~~~~~a~k~w~~~~~d~~~llpk~~P~~i~sve~~eGd-G~~Gsir~l~~~~g~~~~---~~ke--~~~~~~y~vieG~~ 75 (144)
.+++|++++|+++. |+.+ +++|.|. +.++++.++. ...|....+.+..+.... .+.. .+..++|+...++.
T Consensus 6 ~i~a~~~~v~~~l~-d~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 82 (141)
T cd07812 6 EIPAPPEAVWDLLS-DPER-WPEWSPG-LERVEVLGGGEGGVGARFVGGRKGGRRLTLTSEVTEVDPPRPGRFRVTGGGG 82 (141)
T ss_pred EeCCCHHHHHHHHh-Chhh-hhhhCcc-cceEEEcCCCCccceeEEEEEecCCccccceEEEEEecCCCceEEEEecCCC
Confidence 57899999999995 9998 8999996 8888887654 356666665554222111 1122 34678898887664
Q ss_pred CccceEEEEEEEEEEEcCCCceEEEEEEEEEEcCC
Q 037023 76 GWGIFEKVVYDIKFVASGDSGCIYKVAAECYLKAG 110 (144)
Q Consensus 76 l~~~~~s~~~~~~v~p~~~ggs~v~w~~~ye~~~~ 110 (144)
. ..+..++++++.++++|.++|+.++.....
T Consensus 83 ~----~~~~~~~~~~~~~~~~t~v~~~~~~~~~~~ 113 (141)
T cd07812 83 G----VDGTGEWRLEPEGDGGTRVTYTVEYDPPGP 113 (141)
T ss_pred C----cceeEEEEEEECCCCcEEEEEEEEEecCCc
Confidence 3 466788899998765899999999998764
No 12
>cd07824 SRPBCC_6 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=98.89 E-value=9.9e-08 Score=68.95 Aligned_cols=97 Identities=18% Similarity=0.267 Sum_probs=69.2
Q ss_pred ccccCHHHHHHHHhhccccccccccCcceeEEEEec--CCCCCCcEEEEEeec--Cceee---EEee--eceEEEEEEEe
Q 037023 2 PAAVAPSRMFEAVILDCHNLFPKLAPHAFKSIDILE--GDGGDGTLKRYDFEV--LLNFK---TGTH--DNFSIKYTIYE 72 (144)
Q Consensus 2 ~~~~~a~k~w~~~~~d~~~llpk~~P~~i~sve~~e--GdG~~Gsir~l~~~~--g~~~~---~~ke--~~~~~~y~vie 72 (144)
.|++|++++|+++. |..+ +|+|+|. +++++.++ |+.+.|+..++.... +.+.. .+.+ ..+.+.++. +
T Consensus 8 ~i~ap~e~Vw~~~t-D~~~-~~~w~~~-v~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~v~~~~p~~~~~~~~-~ 83 (146)
T cd07824 8 RIPAPPEAVWDVLV-DAES-WPDWWPG-VERVVELEPGDEAGIGARRRYTWRGLLPYRLRFELRVTRIEPLSLLEVRA-S 83 (146)
T ss_pred EecCCHHHHHHHHh-Chhh-cchhhhc-eEEEEEccCCCCCCcceEEEEEEEecCCcEEEEEEEEEeecCCcEEEEEE-E
Confidence 58999999999995 9998 8999995 99999887 334677765544322 22221 2233 677888874 6
Q ss_pred cCCCccceEEEEEEEEEEEcCCCceEEEEEEEEEEcC
Q 037023 73 RDGGWGIFEKVVYDIKFVASGDSGCIYKVAAECYLKA 109 (144)
Q Consensus 73 G~~l~~~~~s~~~~~~v~p~~~ggs~v~w~~~ye~~~ 109 (144)
|+.- . ..+++|+|.+ +||.++++.+++..+
T Consensus 84 g~~~--~----~~~~~~~~~~-~gt~vt~~~~~~~~~ 113 (146)
T cd07824 84 GDLE--G----VGRWTLAPDG-SGTVVRYDWEVRTTK 113 (146)
T ss_pred Eeee--E----EEEEEEEEcC-CCEEEEEEEEEEcCH
Confidence 6521 1 4677888865 469999999999754
No 13
>cd07822 SRPBCC_4 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=98.84 E-value=3.1e-07 Score=64.33 Aligned_cols=98 Identities=14% Similarity=0.121 Sum_probs=69.4
Q ss_pred ccccCHHHHHHHHhhccccccccccCcceeEEEEecCCCCCCcEEEEEeecC--ceee---EEee--eceEEEEEEEecC
Q 037023 2 PAAVAPSRMFEAVILDCHNLFPKLAPHAFKSIDILEGDGGDGTLKRYDFEVL--LNFK---TGTH--DNFSIKYTIYERD 74 (144)
Q Consensus 2 ~~~~~a~k~w~~~~~d~~~llpk~~P~~i~sve~~eGdG~~Gsir~l~~~~g--~~~~---~~ke--~~~~~~y~vieG~ 74 (144)
.|++|++++|+++. |+.+ +|+|+|. +..++... .++|+...+.+..+ .... .+.+ .++.+.|+...|+
T Consensus 7 ~i~ap~~~Vw~~~~-d~~~-~~~w~~~-~~~~~~~~--~~~G~~~~~~~~~~~~~~~~~~~~v~~~~p~~~~~~~~~~~~ 81 (141)
T cd07822 7 EINAPPEKVWEVLT-DFPS-YPEWNPF-VRSATGLS--LALGARLRFVVKLPGGPPRSFKPRVTEVEPPRRLAWRGGLPF 81 (141)
T ss_pred EecCCHHHHHHHHh-cccc-ccccChh-heeEeccc--cCCCCEEEEEEeCCCCCcEEEEEEEEEEcCCCEeEEEecCCC
Confidence 68999999999995 9988 7999985 66665331 45788777777533 2222 2333 6789999987765
Q ss_pred CCccceEEEEEEEEEEEcCCCceEEEEEEEEEE
Q 037023 75 GGWGIFEKVVYDIKFVASGDSGCIYKVAAECYL 107 (144)
Q Consensus 75 ~l~~~~~s~~~~~~v~p~~~ggs~v~w~~~ye~ 107 (144)
.. .-....++.|+|.++++|.++|...|..
T Consensus 82 ~~---~~~~~~~~~~~~~~~~~T~~~~~~~~~g 111 (141)
T cd07822 82 PG---LLDGEHSFELEPLGDGGTRFVHRETFSG 111 (141)
T ss_pred Cc---EeeEEEEEEEEEcCCCcEEEEEeeEEEE
Confidence 32 2234478899998667899999877754
No 14
>cd07818 SRPBCC_1 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=98.83 E-value=2.1e-07 Score=66.88 Aligned_cols=101 Identities=18% Similarity=0.076 Sum_probs=70.8
Q ss_pred ccccCHHHHHHHHhhccccccccccCcceeEEE-----EecCCCCCCcEEEEEeecC-ce-eeEEee--eceEEEEEEEe
Q 037023 2 PAAVAPSRMFEAVILDCHNLFPKLAPHAFKSID-----ILEGDGGDGTLKRYDFEVL-LN-FKTGTH--DNFSIKYTIYE 72 (144)
Q Consensus 2 ~~~~~a~k~w~~~~~d~~~llpk~~P~~i~sve-----~~eGdG~~Gsir~l~~~~g-~~-~~~~ke--~~~~~~y~vie 72 (144)
.|++|++++|+++. |+.+ +|+|+|. ...++ ..+++.++|+...++...+ +. ...+.+ .++.+.|++..
T Consensus 9 ~I~ap~e~V~~~i~-D~~~-~~~W~p~-~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~v~~~~p~~~i~~~~~~ 85 (150)
T cd07818 9 VINAPPEEVFPYVN-DLKN-WPEWSPW-EKLDPDMKRTYSGPDSGVGASYSWEGNDKVGEGEMEITESVPNERIEYELRF 85 (150)
T ss_pred EEeCCHHHHHHHHh-Cccc-CcccCch-hhcCcceEEEecCCCCCCCeEEEEecCCcccceEEEEEecCCCcEEEEEEEe
Confidence 58999999999996 9998 8999995 33322 1233456888777766541 21 112333 67789999886
Q ss_pred cCCCccceEEEEEEEEEEEcCCCceEEEEEEEEEEcC
Q 037023 73 RDGGWGIFEKVVYDIKFVASGDSGCIYKVAAECYLKA 109 (144)
Q Consensus 73 G~~l~~~~~s~~~~~~v~p~~~ggs~v~w~~~ye~~~ 109 (144)
++++. .....++.|+|.+ +||.++|+.+|+..+
T Consensus 86 ~~~~~---~~~~~~~~~~~~~-~gT~v~~~~~~~~~~ 118 (150)
T cd07818 86 IKPFE---ATNDVEFTLEPVG-GGTKVTWGMSGELPF 118 (150)
T ss_pred cCCcc---ccceEEEEEEEcC-CceEEEEEEEecCCc
Confidence 55441 2456889999984 579999999998654
No 15
>cd05018 CoxG Carbon monoxide dehydrogenase subunit G (CoxG). CoxG has been shown, in Oligotropha carboxidovorans, to anchor the carbon monoxide (CO) dehydrogenase to the cytoplasmic membrane. The gene encoding CoxG is part of the Cox cluster (coxBCMSLDEFGHIK) located on a low-copy-number, circular, megaplasmid pHCG3. This cluster includes genes encoding subunits of CO dehydrogenase and several accessory components involved in the utilization of CO. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.78 E-value=3.8e-07 Score=64.46 Aligned_cols=102 Identities=14% Similarity=0.133 Sum_probs=66.9
Q ss_pred ccccCHHHHHHHHhhccccccccccCcceeEEEEecCCCCCCcEEEEEeecC-ceee---EEee--eceEEEEEEEecCC
Q 037023 2 PAAVAPSRMFEAVILDCHNLFPKLAPHAFKSIDILEGDGGDGTLKRYDFEVL-LNFK---TGTH--DNFSIKYTIYERDG 75 (144)
Q Consensus 2 ~~~~~a~k~w~~~~~d~~~llpk~~P~~i~sve~~eGdG~~Gsir~l~~~~g-~~~~---~~ke--~~~~~~y~vieG~~ 75 (144)
.+++|++++|+++. |..+ +|+|+|. +++++.+++++ ......+.+.+- ..+. .+.+ .++.+.++....+.
T Consensus 8 ~i~a~~e~v~~~l~-D~~~-~~~w~p~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (144)
T cd05018 8 RIPAPPEEVWAALN-DPEV-LARCIPG-CESLEKIGPNE-YEATVKLKVGPVKGTFKGKVELSDLDPPESYTITGEGKGG 83 (144)
T ss_pred EecCCHHHHHHHhc-CHHH-HHhhccc-hhhccccCCCe-EEEEEEEEEccEEEEEEEEEEEEecCCCcEEEEEEEEcCC
Confidence 57899999999995 9998 8999996 88888775422 111111222110 1111 1222 45666666643332
Q ss_pred CccceEEEEEEEEEEEcCCCceEEEEEEEEEEcCC
Q 037023 76 GWGIFEKVVYDIKFVASGDSGCIYKVAAECYLKAG 110 (144)
Q Consensus 76 l~~~~~s~~~~~~v~p~~~ggs~v~w~~~ye~~~~ 110 (144)
. ....+..+++++|. +++|.++|+++|...+.
T Consensus 84 ~--~~~~~~~~~~l~~~-~~gT~v~~~~~~~~~g~ 115 (144)
T cd05018 84 A--GFVKGTARVTLEPD-GGGTRLTYTADAQVGGK 115 (144)
T ss_pred C--ceEEEEEEEEEEec-CCcEEEEEEEEEEEccC
Confidence 2 35678899999998 57899999999997653
No 16
>cd07814 SRPBCC_CalC_Aha1-like Putative hydrophobic ligand-binding SRPBCC domain of Micromonospora echinospora CalC, human Aha1, and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Micromonospora echinospora CalC, human Aha1, and related proteins. Proteins in this group belong to the SRPBCC domain superfamily of proteins, which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM), by a self sacrificing mechanism which results in inactivation of both CalC and the highly reactive diradical enediyne species. MeCalC can also inactivate two other enediynes, shishijimicin and namenamicin. A crucial Gly of the MeCalC CLM resistance mechanism is not conserved in this subgroup. This family also includes the C-terminal, Bet v1-like domain of Aha1, one of several co-chaperones, which regulate the dimeric chaperone Hsp90. Aha1 promotes dimer
Probab=98.78 E-value=1.1e-07 Score=66.78 Aligned_cols=125 Identities=12% Similarity=0.067 Sum_probs=77.2
Q ss_pred CccccCHHHHHHHHhhccccccccccCc-ceeEEEEecCCCCCCcEEEEEeecC-ce--ee-EEee--eceEEEEEEEec
Q 037023 1 VPAAVAPSRMFEAVILDCHNLFPKLAPH-AFKSIDILEGDGGDGTLKRYDFEVL-LN--FK-TGTH--DNFSIKYTIYER 73 (144)
Q Consensus 1 ~~~~~~a~k~w~~~~~d~~~llpk~~P~-~i~sve~~eGdG~~Gsir~l~~~~g-~~--~~-~~ke--~~~~~~y~vieG 73 (144)
+.|++|++++|+++. |+.+ +|+|.|. ...+++... | |+.+......+ .. .. .+.+ .++.+.|+...+
T Consensus 6 ~~I~a~~~~Vw~~l~-d~~~-~~~w~~~~~~~~~~~~~--G--g~~~~~~~~~~g~~~~~~~~i~~~~~~~~i~~~~~~~ 79 (139)
T cd07814 6 REFDAPPELVWRALT-DPEL-LAQWFGPTTTAEMDLRV--G--GRWFFFMTGPDGEEGWVSGEVLEVEPPRRLVFTWAFS 79 (139)
T ss_pred EEecCCHHHHHHHcC-CHHH-HHhhhCcCCceEEcccC--C--ceEEEEEECCCCCEEeccEEEEEEcCCCeEEEEeccc
Confidence 368999999999995 9998 8999995 123333222 2 67665443321 12 11 2233 778899998876
Q ss_pred CCCccceEEEEEEEEEEEcCCCceEEEEEEEEEEcCCCCCChhhhhhHHHHHHHHHHHHHHHH
Q 037023 74 DGGWGIFEKVVYDIKFVASGDSGCIYKVAAECYLKAGEESKQEFVKDSQEKGTSLYRAVESHL 136 (144)
Q Consensus 74 ~~l~~~~~s~~~~~~v~p~~~ggs~v~w~~~ye~~~~~~~~~~~~~~~~~~~~~~~k~ie~yl 136 (144)
+.. ..-....+++|.|.+ ++|.++|+.+|...... .+............++..|.+||
T Consensus 80 ~~~--~~~~~~~~~~~~~~~-~~T~v~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~lk~~~ 137 (139)
T cd07814 80 DET--PGPETTVTVTLEETG-GGTRLTLTHSGFPEEDA--EQEAREGMEEGWTGTLDRLKALL 137 (139)
T ss_pred CCC--CCCceEEEEEEEECC-CCEEEEEEEEccChHhH--HHHHHhCHhhHHHHHHHHHHHHh
Confidence 530 122346778899987 56999999999876421 22233333344455555555554
No 17
>cd07817 SRPBCC_8 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=98.77 E-value=3.2e-07 Score=64.61 Aligned_cols=97 Identities=15% Similarity=0.157 Sum_probs=68.3
Q ss_pred CccccCHHHHHHHHhhccccccccccCcceeEEEEecCCCCCCcEEEEEeecCceeeE---Eee--eceEEEEEEEecCC
Q 037023 1 VPAAVAPSRMFEAVILDCHNLFPKLAPHAFKSIDILEGDGGDGTLKRYDFEVLLNFKT---GTH--DNFSIKYTIYERDG 75 (144)
Q Consensus 1 ~~~~~~a~k~w~~~~~d~~~llpk~~P~~i~sve~~eGdG~~Gsir~l~~~~g~~~~~---~ke--~~~~~~y~vieG~~ 75 (144)
+.|++|++++|+++. |+.+ +|+|.|. +++++++.|. +.-..+.+..|..... +.+ .++.+.|....|.
T Consensus 6 i~I~ap~e~V~~~~~-D~~~-~~~w~~~-~~~~~~~~~~---~~~~~~~~~~g~~~~~~~~v~~~~~~~~i~~~~~~~~- 78 (139)
T cd07817 6 ITVNVPVEEVYDFWR-DFEN-LPRFMSH-VESVEQLDDT---RSHWKAKGPAGLSVEWDAEITEQVPNERIAWRSVEGA- 78 (139)
T ss_pred EEeCCCHHHHHHHHh-Chhh-hHHHhhh-hcEEEEcCCC---ceEEEEecCCCCcEEEEEEEeccCCCCEEEEEECCCC-
Confidence 368999999999995 9998 8999995 8999987541 2222233322433322 122 6667888876653
Q ss_pred CccceEEEEEEEEEEEcCCCceEEEEEEEEEEcC
Q 037023 76 GWGIFEKVVYDIKFVASGDSGCIYKVAAECYLKA 109 (144)
Q Consensus 76 l~~~~~s~~~~~~v~p~~~ggs~v~w~~~ye~~~ 109 (144)
+ .+..++.|+|.++++|.+++++.|.+.+
T Consensus 79 ----~-~~~~~~~f~~~~~~~T~vt~~~~~~~~~ 107 (139)
T cd07817 79 ----D-PNAGSVRFRPAPGRGTRVTLTIEYEPPG 107 (139)
T ss_pred ----C-CcceEEEEEECCCCCeEEEEEEEEECCc
Confidence 1 3457788999776789999999999765
No 18
>PF03364 Polyketide_cyc: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR005031 Members of this family of enzymes from Streptomyces spp. are involved in polyketide (linear poly-beta-ketones) synthesis.; PDB: 1T17_A 3GGN_B 2KCZ_A 2D4R_B 2REZ_A 2RES_A 3TVQ_A 2RER_A 2KF2_A 3TL1_A ....
Probab=98.76 E-value=4.5e-07 Score=63.63 Aligned_cols=100 Identities=18% Similarity=0.348 Sum_probs=69.4
Q ss_pred cccCHHHHHHHHhhccccccccccCcceeEEEEecCCCCCCcEEEEEeecC-ceeeEEee----eceEEEEEEEecCCCc
Q 037023 3 AAVAPSRMFEAVILDCHNLFPKLAPHAFKSIDILEGDGGDGTLKRYDFEVL-LNFKTGTH----DNFSIKYTIYERDGGW 77 (144)
Q Consensus 3 ~~~~a~k~w~~~~~d~~~llpk~~P~~i~sve~~eGdG~~Gsir~l~~~~g-~~~~~~ke----~~~~~~y~vieG~~l~ 77 (144)
|++|++++|+++. |..+ +|.|+|. ++++++++.+++ +..-.++...+ .+.....+ ....+.+..++|
T Consensus 1 V~ap~~~V~~~i~-D~e~-~~~~~p~-~~~v~vl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g---- 72 (130)
T PF03364_consen 1 VNAPPEEVWSVIT-DYEN-YPRFFPP-VKEVRVLERDGD-GMRARWEVKFGGIKRSWTSRVTEDPPERIRFEQISG---- 72 (130)
T ss_dssp ESS-HHHHHHHHT-TGGG-HHHHCTT-EEEEEEEEEECC-EEEEEEEECTTTTCEEEEEEEEEECTTTEEEESSET----
T ss_pred CCCCHHHHHHHHH-HHHH-HHHhCCC-CceEEEEEeCCC-eEEEEEEEecCCEEEEEEEEEEEEEeeeeeeeecCC----
Confidence 6899999999995 9998 8999995 999999988764 33234555533 33322111 222266666665
Q ss_pred cceEEEEEEEEEEEcCC--CceEEEEEEEEEEcCCC
Q 037023 78 GIFEKVVYDIKFVASGD--SGCIYKVAAECYLKAGE 111 (144)
Q Consensus 78 ~~~~s~~~~~~v~p~~~--ggs~v~w~~~ye~~~~~ 111 (144)
.++.+..+-+++|.++ |||.++++.+|+.....
T Consensus 73 -~~~~~~g~W~~~~~~~~~~g~~~~v~~~~~~~~~~ 107 (130)
T PF03364_consen 73 -PFKSFEGSWRFEPLGGNEGGTRTRVTYDYEVDPPG 107 (130)
T ss_dssp -TEEEEEEEEEEEEETTECCEEEEEEEEEEEEETSS
T ss_pred -CchhcEEEEEEEECCCCcCCCEEEEEEEEEEecCc
Confidence 3888999999999885 36777888888775443
No 19
>cd07820 SRPBCC_3 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=98.72 E-value=2.2e-07 Score=66.38 Aligned_cols=98 Identities=16% Similarity=0.144 Sum_probs=74.4
Q ss_pred CccccCHHHHHHHHhhccccccccccCcceeEEEEecCC-C--CCCcEEEEEeecCc-eeeE---Eee--eceEEEEEEE
Q 037023 1 VPAAVAPSRMFEAVILDCHNLFPKLAPHAFKSIDILEGD-G--GDGTLKRYDFEVLL-NFKT---GTH--DNFSIKYTIY 71 (144)
Q Consensus 1 ~~~~~~a~k~w~~~~~d~~~llpk~~P~~i~sve~~eGd-G--~~Gsir~l~~~~g~-~~~~---~ke--~~~~~~y~vi 71 (144)
+.|++|++++|+.+. |..+ +|.|+|+ +.++++++.+ | .+|+...+.+...+ ++.. +.+ .++.+....+
T Consensus 5 ~~I~ap~e~V~~~~~-d~~~-~~~~~p~-~~~v~~~~~~~~~~~~G~~~~~~~~~~~~~~~w~~~it~~~p~~~f~~~~~ 81 (137)
T cd07820 5 TVIPAPIEEVFDFHS-RPDN-LERLTPP-WLEFAVLGRTPGLIYGGARVTYRLRHFGIPQRWTTEITEVEPPRRFVDEQV 81 (137)
T ss_pred EEcCCCHHHHHHHHc-Ccch-HHhcCCC-CCCeEEEecCCCcccCCcEEEEEEEecCCceEEEEEEEEEcCCCeEEEEec
Confidence 368999999999995 9998 8999996 8899987543 2 46888888877655 3321 122 5778888877
Q ss_pred ecCCCccceEEEEEEEEEEEcCCCceEEEEEEEEEE
Q 037023 72 ERDGGWGIFEKVVYDIKFVASGDSGCIYKVAAECYL 107 (144)
Q Consensus 72 eG~~l~~~~~s~~~~~~v~p~~~ggs~v~w~~~ye~ 107 (144)
.|. +.++..+..|+|.++ ||.+++.++|+.
T Consensus 82 ~G~-----~~~w~h~~~f~~~~~-gT~vt~~v~~~~ 111 (137)
T cd07820 82 SGP-----FRSWRHTHRFEAIGG-GTLMTDRVEYRL 111 (137)
T ss_pred cCC-----chhCEEEEEEEECCC-ceEEEEEEEEeC
Confidence 663 455667888888775 699999999997
No 20
>cd07825 SRPBCC_7 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=98.71 E-value=4.5e-07 Score=64.61 Aligned_cols=128 Identities=8% Similarity=0.030 Sum_probs=79.0
Q ss_pred ccccCHHHHHHHHhhccccccccccCcceeEEEEecCC--CCCCcEEEEEeec-CceeeE---Eee--eceEEEEEEE-e
Q 037023 2 PAAVAPSRMFEAVILDCHNLFPKLAPHAFKSIDILEGD--GGDGTLKRYDFEV-LLNFKT---GTH--DNFSIKYTIY-E 72 (144)
Q Consensus 2 ~~~~~a~k~w~~~~~d~~~llpk~~P~~i~sve~~eGd--G~~Gsir~l~~~~-g~~~~~---~ke--~~~~~~y~vi-e 72 (144)
.|++|++++|+++. |+.+ +|+|.|... ......++ -++|+...+.... |++... +.+ .++.++|+.. .
T Consensus 7 ~i~ap~e~Vw~~l~-d~~~-~~~W~~~~~-~~~~~~~~~~~~~G~~~~~~~~~~g~~~~~~~~v~~~~p~~~l~~~~~~~ 83 (144)
T cd07825 7 TVDAPAEAVFAVLA-DPRR-HPEIDGSGT-VREAIDGPRILAVGDVFRMAMRLDGGPYRITNHVVAFEENRLIAWRPGPA 83 (144)
T ss_pred EEeCCHHHHHHHHh-Cccc-cceeCCCCc-cccccCCCccCCCCCEEEEEEEcCCCceEEEEEEEEECCCCEEEEEccCC
Confidence 68999999999995 9998 899998522 22223343 3688887776653 333321 233 6777888753 2
Q ss_pred cCCCccceEEEEEEEEEEEcCCCceEEEEEEEEEEcCCCCCChhhhhhHHHHHHHHHHHHHHHH
Q 037023 73 RDGGWGIFEKVVYDIKFVASGDSGCIYKVAAECYLKAGEESKQEFVKDSQEKGTSLYRAVESHL 136 (144)
Q Consensus 73 G~~l~~~~~s~~~~~~v~p~~~ggs~v~w~~~ye~~~~~~~~~~~~~~~~~~~~~~~k~ie~yl 136 (144)
+..+ .....+++++|.++|+|.++++..|.-.+.....+.........+...+..+++||
T Consensus 84 ~~~~----~~~~~~~~l~~~~~g~T~vt~~~~~~g~~~~~~~~~~~~~~~~g~~~~l~~L~~~~ 143 (144)
T cd07825 84 GQEP----GGHRWRWELEPIGPGRTRVTETYDWSAVTDLKELLGFPAFPEVQLEASLDRLATLA 143 (144)
T ss_pred CCCC----CceeEEEEEEECCCCcEEEEEEEeccCChhhhhccccCCCCHHHHHHHHHHHHHHh
Confidence 2222 12345778888877789999998887554310001111112356667777777775
No 21
>cd08860 TcmN_ARO-CYC_like N-terminal aromatase/cyclase domain of the multifunctional protein tetracenomycin (TcmN) and related domains. This family includes the N-terminal aromatase/cyclase (ARO/CYC) domain of Streptomyces glaucescens TcmN, and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, monodomain and didomain. Monodomain aromatase/cyclases have a single ARO/CYC domain. For some, such as TcmN, this single domain is linked to a second domain of unrelated function. TcmN is a multifunctional cyclase-dehydratase-O-methyl transferase. Its N-terminal ARO/CYC domain participates in polyketide binding and catalysis; it promotes C9-C14 first-ring (and C7-C16 second-ring) cyclizations.
Probab=98.60 E-value=3.5e-06 Score=61.65 Aligned_cols=102 Identities=12% Similarity=0.150 Sum_probs=70.2
Q ss_pred CccccCHHHHHHHHhhccccccccccCcceeEEEEecCCC-CCCcEEEEEee-cCceeeEEee-----eceEEEEE-EEe
Q 037023 1 VPAAVAPSRMFEAVILDCHNLFPKLAPHAFKSIDILEGDG-GDGTLKRYDFE-VLLNFKTGTH-----DNFSIKYT-IYE 72 (144)
Q Consensus 1 ~~~~~~a~k~w~~~~~d~~~llpk~~P~~i~sve~~eGdG-~~Gsir~l~~~-~g~~~~~~ke-----~~~~~~y~-vie 72 (144)
++|++||+++|+++. |..+ .|.|+|. ++++++++.++ +.|+--++.+. .|.......+ ..+.+.+. ...
T Consensus 7 i~i~a~~~~v~~lva-Dv~~-~P~~~~~-~~~~~~l~~~~~~~~~r~~i~~~~~g~~~~w~s~~~~~~~~~~i~~~~~~~ 83 (146)
T cd08860 7 IVIDAPLDLVWDMTN-DIAT-WPDLFSE-YAEAEVLEEDGDTVRFRLTMHPDANGTVWSWVSERTLDPVNRTVRARRVET 83 (146)
T ss_pred EEEcCCHHHHHHHHH-hhhh-hhhhccc-eEEEEEEEecCCeEEEEEEEEeccCCEEEEEEEEEEecCCCcEEEEEEecC
Confidence 468999999999995 9999 8999995 99999988653 44532222332 2333333222 55566653 222
Q ss_pred cCCCccceEEEEEEEEEEEcCCCceEEEEEEEEEEcCCC
Q 037023 73 RDGGWGIFEKVVYDIKFVASGDSGCIYKVAAECYLKAGE 111 (144)
Q Consensus 73 G~~l~~~~~s~~~~~~v~p~~~ggs~v~w~~~ye~~~~~ 111 (144)
| ++.....+-+|+|.++ ||.|++..+|+-.++.
T Consensus 84 ~-----p~~~m~~~W~f~~~~~-gT~V~~~~~~~~~~~~ 116 (146)
T cd08860 84 G-----PFAYMNIRWEYTEVPE-GTRMRWVQDFEMKPGA 116 (146)
T ss_pred C-----CcceeeeeEEEEECCC-CEEEEEEEEEEECCCC
Confidence 2 3667778889999865 4999999999977544
No 22
>cd07823 SRPBCC_5 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=98.53 E-value=3.2e-06 Score=60.99 Aligned_cols=102 Identities=10% Similarity=0.078 Sum_probs=62.3
Q ss_pred CccccCHHHHHHHHhhccccccccccCcceeEEEEecCCCCCCcEEEEEeecCc---eee---EEee---eceEEEEEEE
Q 037023 1 VPAAVAPSRMFEAVILDCHNLFPKLAPHAFKSIDILEGDGGDGTLKRYDFEVLL---NFK---TGTH---DNFSIKYTIY 71 (144)
Q Consensus 1 ~~~~~~a~k~w~~~~~d~~~llpk~~P~~i~sve~~eGdG~~Gsir~l~~~~g~---~~~---~~ke---~~~~~~y~vi 71 (144)
+++++|++++|+++. |..+ +|.|+|+ +++++.++++ .. .-.+++..|. .+. .+.+ ..+.+.++.
T Consensus 5 ~~v~a~pe~vw~~l~-D~~~-~~~~~pg-~~~~~~~~~~-~~--~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~- 77 (146)
T cd07823 5 FTVPAPPDRVWALLL-DIER-VAPCLPG-ASLTEVEGDD-EY--KGTVKVKLGPISASFKGTARLLEDDEAARRAVLEA- 77 (146)
T ss_pred EEecCCHHHHHHHhc-CHHH-HHhcCCC-ceeccccCCC-eE--EEEEEEEEccEEEEEEEEEEEEeccCCCcEEEEEE-
Confidence 368999999999995 9998 7999996 8998865322 11 1122322221 110 1111 456666654
Q ss_pred ecC-CCccceEEEEEEEEEEEcCCCceEEEEEEEEEEcCC
Q 037023 72 ERD-GGWGIFEKVVYDIKFVASGDSGCIYKVAAECYLKAG 110 (144)
Q Consensus 72 eG~-~l~~~~~s~~~~~~v~p~~~ggs~v~w~~~ye~~~~ 110 (144)
.|. .-...--....++++.| .+++|.++|.++++..+.
T Consensus 78 ~g~~~~~~g~~~~~~~~~l~~-~~~gT~v~~~~~~~~~g~ 116 (146)
T cd07823 78 TGKDARGQGTAEATVTLRLSP-AGGGTRVTVDTDLALTGK 116 (146)
T ss_pred EEecCCCcceEEEEEEEEEEe-cCCcEEEEEEEEEEEeeE
Confidence 332 11111124667788888 446899999999987663
No 23
>PRK10724 hypothetical protein; Provisional
Probab=98.51 E-value=2.1e-06 Score=63.77 Aligned_cols=99 Identities=18% Similarity=0.273 Sum_probs=73.2
Q ss_pred ccccCHHHHHHHHhhccccccccccCcceeEEEEecCCCCCCcEEEEEeecCc-eeeEEee----eceEEEEEEEecCCC
Q 037023 2 PAAVAPSRMFEAVILDCHNLFPKLAPHAFKSIDILEGDGGDGTLKRYDFEVLL-NFKTGTH----DNFSIKYTIYERDGG 76 (144)
Q Consensus 2 ~~~~~a~k~w~~~~~d~~~llpk~~P~~i~sve~~eGdG~~Gsir~l~~~~g~-~~~~~ke----~~~~~~y~vieG~~l 76 (144)
.+++|++++|+++. |..+ .|+|+|. .+++++++-+++ +.+..++.+-++ ..++... ..+.+.+..++|+
T Consensus 22 ~v~~s~~~v~~lv~-Dve~-yp~flp~-~~~s~vl~~~~~-~~~a~l~v~~~g~~~~f~srv~~~~~~~I~~~~~~Gp-- 95 (158)
T PRK10724 22 LVPYSAEQMYQLVN-DVQS-YPQFLPG-CTGSRVLESTPG-QMTAAVDVSKAGISKTFTTRNQLTSNQSILMQLVDGP-- 95 (158)
T ss_pred EecCCHHHHHHHHH-HHHH-HHHhCcc-cCeEEEEEecCC-EEEEEEEEeeCCccEEEEEEEEecCCCEEEEEecCCC--
Confidence 47899999999995 9998 8999996 888888876532 334444544333 1122111 4558999999883
Q ss_pred ccceEEEEEEEEEEEcCCCceEEEEEEEEEEcC
Q 037023 77 WGIFEKVVYDIKFVASGDSGCIYKVAAECYLKA 109 (144)
Q Consensus 77 ~~~~~s~~~~~~v~p~~~ggs~v~w~~~ye~~~ 109 (144)
++++....+|+|.++++|.|+..++|+-..
T Consensus 96 ---F~~l~g~W~f~p~~~~~t~V~~~l~fef~s 125 (158)
T PRK10724 96 ---FKKLIGGWKFTPLSQEACRIEFHLDFEFTN 125 (158)
T ss_pred ---hhhccceEEEEECCCCCEEEEEEEEEEEch
Confidence 667788999999887789999999999765
No 24
>PF06240 COXG: Carbon monoxide dehydrogenase subunit G (CoxG); InterPro: IPR010419 The CO dehydrogenase structural genes coxMSL are flanked by nine accessory genes arranged as the cox gene cluster. The cox genes are specifically and coordinately transcribed under chemolithoautotrophic conditions in the presence of CO as carbon and energy source [].; PDB: 2NS9_A 2PCS_A.
Probab=98.28 E-value=1.8e-05 Score=57.11 Aligned_cols=127 Identities=14% Similarity=0.196 Sum_probs=70.3
Q ss_pred CccccCHHHHHHHHhhccccccccccCcceeEEEEecCCC-------CCCcEEEEEeecCceeeEEeeece-EEEEEEEe
Q 037023 1 VPAAVAPSRMFEAVILDCHNLFPKLAPHAFKSIDILEGDG-------GDGTLKRYDFEVLLNFKTGTHDNF-SIKYTIYE 72 (144)
Q Consensus 1 ~~~~~~a~k~w~~~~~d~~~llpk~~P~~i~sve~~eGdG-------~~Gsir~l~~~~g~~~~~~ke~~~-~~~y~vie 72 (144)
+++++|++++|+.+. |... +-..+|+ +++++.+. +. ..|.++ .+|.....+....+.++ ++..+.-
T Consensus 3 ~~v~a~~~~vw~~l~-D~~~-l~~ciPG-~~~~e~~~-~~~~~~~~v~vG~i~-~~~~g~~~~~~~~~~~~~~~~~~g~- 76 (140)
T PF06240_consen 3 FEVPAPPEKVWAFLS-DPEN-LARCIPG-VESIEKVG-DEYKGKVKVKVGPIK-GTFDGEVRITEIDPPESYTLEFEGR- 76 (140)
T ss_dssp EEECS-HHHHHHHHT--HHH-HHHHSTT-EEEEEEEC-TEEEEEEEEESCCCE-EEEEEEEEEEEEETTTEEEEEEEEE-
T ss_pred EEecCCHHHHHHHhc-CHHH-HHhhCCC-cEEeeecC-cEEEEEEEEEeccEE-EEEEEEEEEEEcCCCcceEeeeecc-
Confidence 468999999999994 9888 6699996 99999875 42 233332 23321111111111222 2333332
Q ss_pred cCCCccceEEEEEEEEEEEcCCCceEEEEEEEEEEcCC-CCCChhhhh-hHHHHHHHHHHHHHHHH
Q 037023 73 RDGGWGIFEKVVYDIKFVASGDSGCIYKVAAECYLKAG-EESKQEFVK-DSQEKGTSLYRAVESHL 136 (144)
Q Consensus 73 G~~l~~~~~s~~~~~~v~p~~~ggs~v~w~~~ye~~~~-~~~~~~~~~-~~~~~~~~~~k~ie~yl 136 (144)
+.. .-.+.+..+++...++++|.++|++++...+- .......++ .+.+.+..+++.|++.|
T Consensus 77 -g~~--~~~~~~~~~~~~~~~~~~T~v~~~~~~~~~G~la~~g~~~i~~~~~~l~~~f~~~l~~~l 139 (140)
T PF06240_consen 77 -GRG--GGSSASANITLSLEDDGGTRVTWSADVEVGGPLASLGQRLIESVARRLIEQFFENLERKL 139 (140)
T ss_dssp -ECT--CCEEEEEEEEEEECCCTCEEEEEEEEEEEECHHHHC-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -CCc--cceEEEEEEEEEcCCCCCcEEEEEEEEEEccCHHHhhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 222 23355677777776666699999999998763 112222222 23344455566665543
No 25
>COG3427 Carbon monoxide dehydrogenase subunit G, CoxG [Energy production and conversion]
Probab=98.24 E-value=1.7e-05 Score=58.32 Aligned_cols=128 Identities=17% Similarity=0.187 Sum_probs=82.2
Q ss_pred CccccCHHHHHHHHhhccccccccccCcceeEEEEecCCCC-------CCcEEEEEeecCceeeE--EeeeceEEEEEEE
Q 037023 1 VPAAVAPSRMFEAVILDCHNLFPKLAPHAFKSIDILEGDGG-------DGTLKRYDFEVLLNFKT--GTHDNFSIKYTIY 71 (144)
Q Consensus 1 ~~~~~~a~k~w~~~~~d~~~llpk~~P~~i~sve~~eGdG~-------~Gsir~l~~~~g~~~~~--~ke~~~~~~y~vi 71 (144)
+.+++|++++|+.+. |+.. +-..+|+ ++|++ .+||.- +|.+| -+|. +++.. +.+..++++.+.-
T Consensus 7 f~V~~p~e~Vw~~L~-dpe~-~a~ciPG-~qs~e-~~g~e~~~~v~l~ig~l~-~~~~--g~~~~~~v~~~~~~~~i~g~ 79 (146)
T COG3427 7 FRVAAPPEAVWEFLN-DPEQ-VAACIPG-VQSVE-TNGDEYTAKVKLKIGPLK-GTFS--GRVRFVNVDEPPRSITINGS 79 (146)
T ss_pred EEecCCHHHHHHHhc-CHHH-HHhhcCC-cceee-ecCCeEEEEEEEeeccee-EEEE--EEEEEccccCCCcEEEEEee
Confidence 368999999999995 9887 6789996 99999 568742 33333 1221 11111 1225666666653
Q ss_pred ecCCCccceEEEEEEEEEEEcCCCceEEEEEEEEEEcCC-CCCChhhhh-hHHHHHHHHHHHHHHHHhh
Q 037023 72 ERDGGWGIFEKVVYDIKFVASGDSGCIYKVAAECYLKAG-EESKQEFVK-DSQEKGTSLYRAVESHLLA 138 (144)
Q Consensus 72 eG~~l~~~~~s~~~~~~v~p~~~ggs~v~w~~~ye~~~~-~~~~~~~~~-~~~~~~~~~~k~ie~yl~~ 138 (144)
.|. . ...-..++.++++|.++| |.+.|.++=+-.+- ...-++.++ .+.+.+..++..|.+.|-+
T Consensus 80 G~~-~-~g~~~~~~~v~l~~~g~g-t~v~w~~~~~~gg~laqlGsr~i~~~~~kli~~~~~~l~~~l~~ 145 (146)
T COG3427 80 GGG-A-AGFADGTVDVQLEPSGEG-TRVNWFADANVGGKLAQLGSRLIDSVARKLINRFFDCLSSELAA 145 (146)
T ss_pred ccc-c-cceeeeeeEEEEEEcCCC-cEEEEEEEccccHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 323 3 367788899999998876 99999998876542 222223222 2345556778888777643
No 26
>cd08898 SRPBCC_CalC_Aha1-like_5 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.01 E-value=6.5e-05 Score=53.24 Aligned_cols=127 Identities=10% Similarity=0.081 Sum_probs=69.3
Q ss_pred CccccCHHHHHHHHhhccccccccccCcceeEEEEecCCCCCCcEEEEEeecC--cee-eEEee--eceEEEEEEEecC-
Q 037023 1 VPAAVAPSRMFEAVILDCHNLFPKLAPHAFKSIDILEGDGGDGTLKRYDFEVL--LNF-KTGTH--DNFSIKYTIYERD- 74 (144)
Q Consensus 1 ~~~~~~a~k~w~~~~~d~~~llpk~~P~~i~sve~~eGdG~~Gsir~l~~~~g--~~~-~~~ke--~~~~~~y~vieG~- 74 (144)
+.|++|++++|+++. |+.. +++|.|... .....|.+..| .+.+..+ +.. ..+.+ .++.+.|+...+.
T Consensus 7 i~i~a~~e~Vw~~~t-d~~~-~~~W~~~~~--~~~~~~~~~~g---~~~~~~~~~~~~~~~i~~~~p~~~l~~~~~~~~~ 79 (145)
T cd08898 7 ILIDAPRERVWRALT-DPEH-FGQWFGVKL--GPFVVGEGATG---EITYPGYEHGVFPVTVVEVDPPRRFSFRWHPPAI 79 (145)
T ss_pred EEecCCHHHHHHHhc-Chhh-hhhcccccC--CCcccCCccee---EEecCCCCccceEEEEEEeCCCcEEEEEecCCCc
Confidence 368999999999996 9887 799999632 12212222223 2344322 222 13333 7777777754322
Q ss_pred ----CCccceEEEEEEEEEEEcCCCceEEEEEEE-EEEcCCCCCChhhhhhHHHHHHHHHHHHHHHHh
Q 037023 75 ----GGWGIFEKVVYDIKFVASGDSGCIYKVAAE-CYLKAGEESKQEFVKDSQEKGTSLYRAVESHLL 137 (144)
Q Consensus 75 ----~l~~~~~s~~~~~~v~p~~~ggs~v~w~~~-ye~~~~~~~~~~~~~~~~~~~~~~~k~ie~yl~ 137 (144)
... .-..-..+++|++.+ ++|.++++-. |...+++. .........+.-..++..|++||-
T Consensus 80 ~~~~~~~-~~~~~~~~~~~~~~~-~gT~vt~~~~~~~~~~~~~-~~~~~~~~~~gw~~~l~~L~~~le 144 (145)
T cd08898 80 DPGEDYS-AEPSTLVEFTLEPIA-GGTLLTVTESGFDALPAER-RAEAYRMNEGGWDEQLENLVAYVE 144 (145)
T ss_pred ccccccC-CCCceEEEEEEEecC-CcEEEEEEEcCCCCCChHH-HHHHHHhhhhhHHHHHHHHHHHhc
Confidence 110 111233788888876 5688888866 32221110 011222233555667788888874
No 27
>cd08899 SRPBCC_CalC_Aha1-like_6 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=97.97 E-value=0.00015 Score=53.05 Aligned_cols=117 Identities=13% Similarity=0.030 Sum_probs=72.3
Q ss_pred ccccCHHHHHHHHhhccccccccccCcceeEEEEecCCCCCCcEEEEEeec--Ccee-eEEee--eceEEEEEEEecCCC
Q 037023 2 PAAVAPSRMFEAVILDCHNLFPKLAPHAFKSIDILEGDGGDGTLKRYDFEV--LLNF-KTGTH--DNFSIKYTIYERDGG 76 (144)
Q Consensus 2 ~~~~~a~k~w~~~~~d~~~llpk~~P~~i~sve~~eGdG~~Gsir~l~~~~--g~~~-~~~ke--~~~~~~y~vieG~~l 76 (144)
.|++|++++|+++. |+.. ++.|.|. . .++-.+|+...+.+.. +... ..+.+ .++.+.|+...++ .
T Consensus 18 ~i~Ap~e~Vw~alt-dp~~-~~~W~~~-~------~~~~~~G~~~~~~~~~~~~~~~~~~v~e~~p~~~l~~~~~~~~-~ 87 (157)
T cd08899 18 LLPAPIEDVWAALT-DPER-LARWFAP-G------TGDLRVGGRVEFVMDDEEGPNATGTILACEPPRLLAFTWGEGG-G 87 (157)
T ss_pred ecCCCHHHHHHHHc-CHHH-HHhhcCC-C------CCCcccCceEEEEecCCCCCccceEEEEEcCCcEEEEEecCCC-C
Confidence 58999999999995 9887 8999984 2 2333455555566654 1111 13333 6777888875443 1
Q ss_pred ccceEEEEEEEEEEEcCCCceEEEEEEEEEEcCCCCCChhhhhhHHHHHHHHHHHHHHHHhhCC
Q 037023 77 WGIFEKVVYDIKFVASGDSGCIYKVAAECYLKAGEESKQEFVKDSQEKGTSLYRAVESHLLANP 140 (144)
Q Consensus 77 ~~~~~s~~~~~~v~p~~~ggs~v~w~~~ye~~~~~~~~~~~~~~~~~~~~~~~k~ie~yl~~~p 140 (144)
....+++|++.+ ++|.++.+.++.+.. +......+.-..++..|.+||-..+
T Consensus 88 -----~~~~~~~l~~~~-~gT~v~~~~~~~~~~------~~~~~~~~GW~~~L~~Lk~~~e~~~ 139 (157)
T cd08899 88 -----ESEVRFELAPEG-DGTRLTLTHRLLDER------FGAGAVGAGWHLCLDVLEAALEGGP 139 (157)
T ss_pred -----CceEEEEEEEcC-CCEEEEEEEeccCch------hhhhhhcccHHHHHHHHHHHHcCCC
Confidence 113567778765 568887777775433 1122223555667788888877654
No 28
>COG5637 Predicted integral membrane protein [Function unknown]
Probab=97.97 E-value=3.5e-05 Score=58.53 Aligned_cols=96 Identities=14% Similarity=0.159 Sum_probs=73.8
Q ss_pred CccccCHHHHHHHHhhccccccccccCcceeEEEEecCCCCCCcEEEEEee--cCceeeEEee-----eceEEEEEEEec
Q 037023 1 VPAAVAPSRMFEAVILDCHNLFPKLAPHAFKSIDILEGDGGDGTLKRYDFE--VLLNFKTGTH-----DNFSIKYTIYER 73 (144)
Q Consensus 1 ~~~~~~a~k~w~~~~~d~~~llpk~~P~~i~sve~~eGdG~~Gsir~l~~~--~g~~~~~~ke-----~~~~~~y~vieG 73 (144)
++|+.|++.+|..++ |+.+ +|.|+-+ +.||++++-.- | +|+.. .|..++...+ .+..|.+.-++|
T Consensus 76 V~I~kPae~vy~~W~-dLe~-lP~~Mkh-l~SVkVlddkr---S--rW~~~ap~g~~v~Wea~it~d~~~e~I~W~Sl~G 147 (217)
T COG5637 76 VTIDKPAEQVYAYWR-DLEN-LPLWMKH-LDSVKVLDDKR---S--RWKANAPLGLEVEWEAEITKDIPGERIQWESLPG 147 (217)
T ss_pred EEeCChHHHHHHHHH-hhhh-hhHHHHh-hceeeccCCCc---c--ceeEcCCCCceEEEeehhhccCCCcEEeeecCCC
Confidence 478999999999996 9999 8999985 99999987642 3 35554 3455654333 888999999999
Q ss_pred CCCccceEEEEEEEEEEEcCCCceEEEEEEEEEEcC
Q 037023 74 DGGWGIFEKVVYDIKFVASGDSGCIYKVAAECYLKA 109 (144)
Q Consensus 74 ~~l~~~~~s~~~~~~v~p~~~ggs~v~w~~~ye~~~ 109 (144)
.-+.+. ..++|.+..++.|+|+.++.|-+-+
T Consensus 148 a~v~Ns-----G~VrF~~~pg~~t~V~v~lsY~~Pg 178 (217)
T COG5637 148 ARVENS-----GAVRFYDAPGDSTEVKVTLSYRPPG 178 (217)
T ss_pred CcCCCC-----ccEEeeeCCCCceEEEEEEEecCCc
Confidence 755422 5678888887778999999997543
No 29
>cd08897 SRPBCC_CalC_Aha1-like_4 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=97.75 E-value=0.00099 Score=47.18 Aligned_cols=116 Identities=16% Similarity=0.102 Sum_probs=64.7
Q ss_pred ccccCHHHHHHHHhhccccccccccCcceeE--EEEecCCCCCCcEEEEEee-cCc-e---e-eEEee--eceEEEEEEE
Q 037023 2 PAAVAPSRMFEAVILDCHNLFPKLAPHAFKS--IDILEGDGGDGTLKRYDFE-VLL-N---F-KTGTH--DNFSIKYTIY 71 (144)
Q Consensus 2 ~~~~~a~k~w~~~~~d~~~llpk~~P~~i~s--ve~~eGdG~~Gsir~l~~~-~g~-~---~-~~~ke--~~~~~~y~vi 71 (144)
.+++|+++||+++. |... +.+|.+. ... +...+.|=.+|..-.+.+. +++ . + ..+.+ .++.+.|+..
T Consensus 7 ~~~ap~e~Vw~a~t-d~e~-~~~W~~~-~~~~~~~~~~~d~~~GG~~~~~~~~~~g~~~~~~~g~~~ei~p~~~l~~~~~ 83 (133)
T cd08897 7 TVDAPIEKVWEAWT-TPEH-ITKWNFA-SDDWHCPSAENDLRVGGKFSYRMEAKDGSMGFDFEGTYTEVEPHKLIEYTME 83 (133)
T ss_pred EeCCCHHHHHHHhC-CHHH-HhhCCCC-CCCcccceeeecCCcCCEEEEEEEcCCCCcccccceEEEEECCCCEEEEEcC
Confidence 57899999999995 8776 7899643 111 1111233234444333332 222 1 1 12233 7778888863
Q ss_pred ecCCCccceEEEEEEEEEEEcCCCceEEEEEEEEEEcCCCCCChhhhhhHHHHHHHHHHHHHHHHh
Q 037023 72 ERDGGWGIFEKVVYDIKFVASGDSGCIYKVAAECYLKAGEESKQEFVKDSQEKGTSLYRAVESHLL 137 (144)
Q Consensus 72 eG~~l~~~~~s~~~~~~v~p~~~ggs~v~w~~~ye~~~~~~~~~~~~~~~~~~~~~~~k~ie~yl~ 137 (144)
.| -..+++++|.+ ++|.++.+ +...+. ...+. ..+.-..++..|++||-
T Consensus 84 ~~---------~~v~~~l~~~~-~gT~l~l~--~~~~~~--~~~~~---~~~GW~~~l~~L~~~le 132 (133)
T cd08897 84 DG---------REVEVEFTEEG-DGTKVVET--FDAENE--NPVEM---QRQGWQAILDNFKKYVE 132 (133)
T ss_pred CC---------CEEEEEEEECC-CCEEEEEE--ECCCCC--CcHHH---HHHHHHHHHHHHHHHhh
Confidence 22 13688889865 66877654 433221 11222 33566677888888874
No 30
>cd08893 SRPBCC_CalC_Aha1-like_GntR-HTH Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins; some contain an N-terminal GntR family winged HTH DNA-binding domain. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. Some proteins in this subgroup contain an N-terminal winged helix-turn-helix DNA-binding domain found in the GntR family of proteins which include bacterial transcriptional regulators and their putative homologs from eukaryota and archaea.
Probab=97.71 E-value=0.00093 Score=46.61 Aligned_cols=123 Identities=10% Similarity=0.001 Sum_probs=66.6
Q ss_pred CccccCHHHHHHHHhhccccccccccCcceeEEEEecCCCCCCcEEEEEeecC--ceee-EEee--eceEEEEEEEecCC
Q 037023 1 VPAAVAPSRMFEAVILDCHNLFPKLAPHAFKSIDILEGDGGDGTLKRYDFEVL--LNFK-TGTH--DNFSIKYTIYERDG 75 (144)
Q Consensus 1 ~~~~~~a~k~w~~~~~d~~~llpk~~P~~i~sve~~eGdG~~Gsir~l~~~~g--~~~~-~~ke--~~~~~~y~vieG~~ 75 (144)
+.|++|+++||+++. |... +|.|.+... .+++-.+|.--.+..... ..+. .+.+ .++.+.|+-..++.
T Consensus 6 ~~i~ap~e~Vw~~~t-d~~~-~~~W~~~~~-----~~~~~~~G~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~ 78 (136)
T cd08893 6 TYIRATPEKVWQALT-DPEF-TRQYWGGTT-----VESDWKVGSAFEYRRGDDGTVDVEGEVLESDPPRRLVHTWRAVWD 78 (136)
T ss_pred EEecCCHHHHHHHHc-Cchh-hhheecccc-----cccCCcCCCeEEEEeCCCcccccceEEEEecCCCeEEEEEecCCC
Confidence 368999999999995 9887 899998622 233433444333444331 1121 2333 56666666543222
Q ss_pred Cc-cceEEEEEEEEEEEcCCCceEEEEEEEEEEcCCCCCChhhhhhHHHHHHHHHHHHHHHH
Q 037023 76 GW-GIFEKVVYDIKFVASGDSGCIYKVAAECYLKAGEESKQEFVKDSQEKGTSLYRAVESHL 136 (144)
Q Consensus 76 l~-~~~~s~~~~~~v~p~~~ggs~v~w~~~ye~~~~~~~~~~~~~~~~~~~~~~~k~ie~yl 136 (144)
.. ..-.....++.+++.++ +|.++.+..-...+ +.......+....+++.|.+||
T Consensus 79 ~~~~~~~~~~v~~~l~~~~~-~t~l~~~~~~~~~~-----~~~~~~~~~gw~~~l~~Lk~~~ 134 (136)
T cd08893 79 PEMAAEPPSRVTFEIEPVGD-VVKLTVTHDGFPPG-----SPTLEGVSGGWPAILSSLKTLL 134 (136)
T ss_pred cccCCCCCEEEEEEEEecCC-cEEEEEEecCCCCc-----hhHHHhhhcCHHHHHHHHHHHh
Confidence 10 01123456777888654 56555444433221 1222233355666778887776
No 31
>PF08327 AHSA1: Activator of Hsp90 ATPase homolog 1-like protein; InterPro: IPR013538 This family includes eukaryotic, prokaryotic and archaeal proteins that bear similarity to a C-terminal region of human activator of 90 kDa heat shock protein ATPase homologue 1 (AHSA1/p38, O95433 from SWISSPROT). This protein is known to interact with the middle domain of Hsp90, and stimulate its ATPase activity []. It is probably a general up regulator of Hsp90 function, particularly contributing to its efficiency in conditions of increased stress []. p38 is also known to interact with the cytoplasmic domain of the VSV G protein, and may thus be involved in protein transport []. It has also been reported as being under expressed in Down's syndrome. This region is found repeated in two members of this family (Q8XY04 from SWISSPROT and Q6MH87 from SWISSPROT). ; GO: 0006950 response to stress; PDB: 2KEW_A 2KTE_A 2IL5_A 1ZXF_A 2L65_A 2GKD_A 1XN6_A 3OTL_B 2LCG_A 3Q63_D ....
Probab=97.68 E-value=0.00098 Score=45.84 Aligned_cols=117 Identities=15% Similarity=0.164 Sum_probs=64.3
Q ss_pred ccCHHHHHHHHhhccccccccccCcceeEEEEecCCCCCCcEEEEEeecCceee---EEee--eceEEEEEEEecCCCcc
Q 037023 4 AVAPSRMFEAVILDCHNLFPKLAPHAFKSIDILEGDGGDGTLKRYDFEVLLNFK---TGTH--DNFSIKYTIYERDGGWG 78 (144)
Q Consensus 4 ~~~a~k~w~~~~~d~~~llpk~~P~~i~sve~~eGdG~~Gsir~l~~~~g~~~~---~~ke--~~~~~~y~vieG~~l~~ 78 (144)
+||+++||+++. +... +.+|.+......+..+| |+++... .+|.... .+.+ .++.+.|+.--++.- .
T Consensus 1 ~ap~e~Vw~a~t-~~~~-~~~W~~~~~~~~~~~~G----g~~~~~~-~~g~~~~~~~~v~~~~p~~~i~~~~~~~~~~-~ 72 (124)
T PF08327_consen 1 DAPPERVWEALT-DPEG-LAQWFTTSEAEMDFRPG----GSFRFMD-PDGGEFGFDGTVLEVEPPERIVFTWRMPDDP-D 72 (124)
T ss_dssp SSSHHHHHHHHH-SHHH-HHHHSEEEEEEEECSTT----EEEEEEE-TTSEEEEEEEEEEEEETTTEEEEEEEEETSS-S
T ss_pred CcCHHHHHHHHC-CHhH-HhhccCCCcceeeeecC----CEEEEEe-cCCCCceeeEEEEEEeCCEEEEEEEEccCCC-C
Confidence 689999999995 8776 77993323444444333 4444312 3333322 2333 666677774333321 1
Q ss_pred ceEEEEEEEEEEEcCCCceEEEEEEEEEEcCCCCCChhhhhh-HHHHHHHHHHHHHHHH
Q 037023 79 IFEKVVYDIKFVASGDSGCIYKVAAECYLKAGEESKQEFVKD-SQEKGTSLYRAVESHL 136 (144)
Q Consensus 79 ~~~s~~~~~~v~p~~~ggs~v~w~~~ye~~~~~~~~~~~~~~-~~~~~~~~~k~ie~yl 136 (144)
.. ....++.|++ .+++|.++.+..=. +..+.... .......++..|.+||
T Consensus 73 ~~-~~~v~~~~~~-~~~~T~l~~~~~~~------~~~~~~~~~~~~gw~~~l~~L~~~l 123 (124)
T PF08327_consen 73 GP-ESRVTFEFEE-EGGGTRLTLTHSGF------PDDDEEEEGMEQGWEQMLDRLKAYL 123 (124)
T ss_dssp CE-EEEEEEEEEE-ETTEEEEEEEEEEE------HSHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred CC-ceEEEEEEEE-cCCcEEEEEEEEcC------CccHHHHHHHHHHHHHHHHHHHHHh
Confidence 12 2347888888 55677776665222 12222221 3455666777777776
No 32
>cd08895 SRPBCC_CalC_Aha1-like_2 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=97.60 E-value=0.0091 Score=42.85 Aligned_cols=124 Identities=15% Similarity=0.089 Sum_probs=66.9
Q ss_pred ccccCHHHHHHHHhhccccccccccCcc-eeEEEEecCCCCCCcEEEE--Eeec-------Cc--ee-eEEee--eceEE
Q 037023 2 PAAVAPSRMFEAVILDCHNLFPKLAPHA-FKSIDILEGDGGDGTLKRY--DFEV-------LL--NF-KTGTH--DNFSI 66 (144)
Q Consensus 2 ~~~~~a~k~w~~~~~d~~~llpk~~P~~-i~sve~~eGdG~~Gsir~l--~~~~-------g~--~~-~~~ke--~~~~~ 66 (144)
.+++|+++||+++. |... +.+|.+.. +.. ...+.|-.+|-.-.+ ++.. |. .+ ..+.+ .++.+
T Consensus 7 ~i~ap~e~Vw~a~t-d~~~-~~~W~~p~~~~~-~~~~~d~~~GG~~~~~~~~~~~~~g~~~g~~~~~~g~v~~v~p~~~i 83 (146)
T cd08895 7 VIAAPPERVYRAFL-DPDA-LAKWLPPDGMTG-TVHEFDAREGGGFRMSLTYFDPSVGKTTGNTDVFGGRFLELVPNERI 83 (146)
T ss_pred EECCCHHHHHHHHc-CHHH-HhhcCCCCCeEe-EEEEEecccCCeEEEEEEcCCccccccCCcEeeeEEEEEEEcCCCEE
Confidence 47899999999995 8887 78987632 221 122333223333223 3222 21 11 12333 56666
Q ss_pred EEEEEecCCCccceEEEEEEEEEEEcCCCceEEEEEEEEEEcCCCCCChhhhhhHHHHHHHHHHHHHHHHh
Q 037023 67 KYTIYERDGGWGIFEKVVYDIKFVASGDSGCIYKVAAECYLKAGEESKQEFVKDSQEKGTSLYRAVESHLL 137 (144)
Q Consensus 67 ~y~vieG~~l~~~~~s~~~~~~v~p~~~ggs~v~w~~~ye~~~~~~~~~~~~~~~~~~~~~~~k~ie~yl~ 137 (144)
.|+..-.+... . .....++.|++.+ ++|.++++...-+ +. .. .....+.-..++..|++||-
T Consensus 84 ~~~~~~~~~~~-~-~~~~v~~~~~~~~-~~T~lt~~~~~~~--~~-~~---~~~~~~GW~~~l~~L~~~le 145 (146)
T cd08895 84 VYTDVFDDPSL-S-GEMTMTWTLSPVS-GGTDVTIVQSGIP--DG-IP---PEDCELGWQESLANLAALVE 145 (146)
T ss_pred EEEEEecCCCC-C-ceEEEEEEEEecC-CCEEEEEEEeCCC--ch-hh---hhHHHHHHHHHHHHHHHHhc
Confidence 66643222211 1 1235788888876 5688777775422 11 11 12233666777888888874
No 33
>cd08900 SRPBCC_CalC_Aha1-like_7 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=97.55 E-value=0.0072 Score=43.16 Aligned_cols=126 Identities=13% Similarity=-0.002 Sum_probs=68.4
Q ss_pred ccccCHHHHHHHHhhccccccccccCc-ceeEEEEecCCCCCCcEEEEEee-cCce-e---eEEee--eceEEEEEEE--
Q 037023 2 PAAVAPSRMFEAVILDCHNLFPKLAPH-AFKSIDILEGDGGDGTLKRYDFE-VLLN-F---KTGTH--DNFSIKYTIY-- 71 (144)
Q Consensus 2 ~~~~~a~k~w~~~~~d~~~llpk~~P~-~i~sve~~eGdG~~Gsir~l~~~-~g~~-~---~~~ke--~~~~~~y~vi-- 71 (144)
.+++|+++||+++. |... +.+|... .--.++..+.|-.+|..-.+.+. .++. . ..+.+ .++.+.|+-.
T Consensus 7 ~~~ap~e~Vw~a~t-dp~~-l~~W~~~~~~~~~~~~~~d~~~Gg~~~~~~~~~~g~~~~~~g~~~~~~p~~~l~~t~~~~ 84 (143)
T cd08900 7 TYPAPPERVFAAWS-DPAA-RARWFVPSPDWTVLEDEFDFRVGGREVSRGGPKGGPEITVEARYHDIVPDERIVYTYTMH 84 (143)
T ss_pred EeCCCHHHHHHHhc-CHHH-HHhcCCCCCCCceeeeEEecCCCCEEEEEEECCCCCEEeeeEEEEEecCCceEEEEEeec
Confidence 47899999999995 8776 7899854 11122223344334444334443 2322 1 13334 5666666642
Q ss_pred ecCCCccceEEEEEEEEEEEcCCCceEEEEEEEEEEcCCCCCChhhhhhHHHHHHHHHHHHHHHHh
Q 037023 72 ERDGGWGIFEKVVYDIKFVASGDSGCIYKVAAECYLKAGEESKQEFVKDSQEKGTSLYRAVESHLL 137 (144)
Q Consensus 72 eG~~l~~~~~s~~~~~~v~p~~~ggs~v~w~~~ye~~~~~~~~~~~~~~~~~~~~~~~k~ie~yl~ 137 (144)
.++.- ... -..++.|++.+ |+|.++.+-.+-..++. +........-..++..|++||-
T Consensus 85 ~~~~~-~~~--s~v~~~l~~~~-~gT~l~~~~~~~~~~~~----~~~~~~~~GW~~~l~~L~~~l~ 142 (143)
T cd08900 85 IGGTL-LSA--SLATVEFAPEG-GGTRLTLTEQGAFLDGD----DDPAGREQGTAALLDNLAAELE 142 (143)
T ss_pred cCCcc-ccc--eEEEEEEEECC-CCEEEEEEEEEeccccc----chhhhHHHHHHHHHHHHHHHHh
Confidence 22211 112 23788888875 56877777665322211 1122233556667788888873
No 34
>cd07826 SRPBCC_CalC_Aha1-like_9 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=97.54 E-value=0.0026 Score=45.72 Aligned_cols=127 Identities=15% Similarity=0.031 Sum_probs=69.0
Q ss_pred ccccCHHHHHHHHhhccccccccccCcceeEEEEecCCCCCCcEEEEEee-cCc-e--e-eEEee--eceEEEEEE-Eec
Q 037023 2 PAAVAPSRMFEAVILDCHNLFPKLAPHAFKSIDILEGDGGDGTLKRYDFE-VLL-N--F-KTGTH--DNFSIKYTI-YER 73 (144)
Q Consensus 2 ~~~~~a~k~w~~~~~d~~~llpk~~P~~i~sve~~eGdG~~Gsir~l~~~-~g~-~--~-~~~ke--~~~~~~y~v-ieG 73 (144)
.+++|+++||+++. |... +.+|....--.+...+.|-.+|..-.+.+. +++ . + ..+.+ .++.+.|+- .++
T Consensus 7 ~~~ap~e~Vw~a~T-dpe~-l~~W~~p~~~~~~~~~~d~r~GG~~~~~~~~~~g~~~~~~g~~~ei~p~~~l~~t~~~~~ 84 (142)
T cd07826 7 EFDAPRELVFRAHT-DPEL-VKRWWGPRGLTMTVCECDIRVGGSYRYVHRAPDGEEMGFHGVYHEVTPPERIVQTEEFEG 84 (142)
T ss_pred EECCCHHHHHHHhC-CHHH-HhhccCCCCCcceEEEEeccCCCEEEEEEECCCCCEecceEEEEEEcCCCEEEEEeEecC
Confidence 47899999999994 8776 788887542233334455344444444443 222 1 1 13333 444455542 233
Q ss_pred CCCccceEEEEEEEEEEEcCCCceEEEEEEEEEEcCCCCCChhhhhhHHHHHHHHHHHHHHHHh
Q 037023 74 DGGWGIFEKVVYDIKFVASGDSGCIYKVAAECYLKAGEESKQEFVKDSQEKGTSLYRAVESHLL 137 (144)
Q Consensus 74 ~~l~~~~~s~~~~~~v~p~~~ggs~v~w~~~ye~~~~~~~~~~~~~~~~~~~~~~~k~ie~yl~ 137 (144)
... . ....++++++.+ |+|.++.+..|-.. ............+.-..++..|++||.
T Consensus 85 ~~~--~--~s~v~~~l~~~~-~gT~l~l~~~~~~~--~~~~~~~~~~~~~Gw~~~l~~L~~~l~ 141 (142)
T cd07826 85 LPD--G--VALETVTFTELG-GRTRLTATSRYPSK--EARDGVLASGMEEGMEESYDRLDELLA 141 (142)
T ss_pred CCC--C--ceEEEEEEEECC-CCEEEEEEEEeCCH--HHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 221 1 234678888865 67888877554211 000001122233555677888888885
No 35
>cd08894 SRPBCC_CalC_Aha1-like_1 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=97.54 E-value=0.0018 Score=46.22 Aligned_cols=120 Identities=13% Similarity=-0.010 Sum_probs=67.0
Q ss_pred ccccCHHHHHHHHhhccccccccccC-cceeEEEEecCCCCCCcEEEEEe-ecCc-ee---eEEee--eceEEEEEEEec
Q 037023 2 PAAVAPSRMFEAVILDCHNLFPKLAP-HAFKSIDILEGDGGDGTLKRYDF-EVLL-NF---KTGTH--DNFSIKYTIYER 73 (144)
Q Consensus 2 ~~~~~a~k~w~~~~~d~~~llpk~~P-~~i~sve~~eGdG~~Gsir~l~~-~~g~-~~---~~~ke--~~~~~~y~vieG 73 (144)
.+++|+++||+++. |... +.+|.+ ..+.... .+.|..+|..-.+.+ .+++ .. ..+.+ .++.+.|+.-.+
T Consensus 7 ~i~ap~e~Vw~a~t-~p~~-l~~W~~p~~~~~~~-~~~d~~~GG~~~~~~~~~~g~~~~~~g~v~e~~p~~~l~~t~~~~ 83 (139)
T cd08894 7 VIDAPRDLVFAAWT-DPEH-LAQWWGPEGFTNTT-HEFDLRPGGRWRFVMHGPDGTDYPNRIVFLEIEPPERIVYDHGSG 83 (139)
T ss_pred EeCCCHHHHHHHhC-CHHH-HhhccCcCCCcceE-EEEEecCCCEEEEEEECCCCCEecceEEEEEEcCCCEEEEEeccC
Confidence 57899999999995 8776 788864 3232221 233433444333434 2232 22 13333 677777776333
Q ss_pred CCCccceEEEEEEEEEEEcCCCceEEEEEEEEEEcCCCCCChhh----hhhHHHHHHHHHHHHHHHHh
Q 037023 74 DGGWGIFEKVVYDIKFVASGDSGCIYKVAAECYLKAGEESKQEF----VKDSQEKGTSLYRAVESHLL 137 (144)
Q Consensus 74 ~~l~~~~~s~~~~~~v~p~~~ggs~v~w~~~ye~~~~~~~~~~~----~~~~~~~~~~~~k~ie~yl~ 137 (144)
+ .. ...+++|+|.+ ++|.++.+..|. ..++. .....+....++..|++||-
T Consensus 84 ~----~~--~~v~~~~~~~~-~gT~ltl~~~~~------~~~~~~~~~~~~~~~Gw~~~l~~L~~~l~ 138 (139)
T cd08894 84 P----PR--FRLTVTFEEQG-GKTRLTWRQVFP------TAAERCEKIKFGAVEGNEQTLDRLAAYLA 138 (139)
T ss_pred C----Cc--EEEEEEEEECC-CCEEEEEEEEcC------CHHHHHHHHHhCHHHHHHHHHHHHHHHHh
Confidence 1 11 34778888866 678888776542 11111 11123445677788888873
No 36
>cd08896 SRPBCC_CalC_Aha1-like_3 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=97.46 E-value=0.0054 Score=44.06 Aligned_cols=123 Identities=11% Similarity=0.087 Sum_probs=65.2
Q ss_pred ccccCHHHHHHHHhhccccccccccCcc-----eeEEEEecCCCCCCcEEEEEe-ec-Ccee---eEEee--eceEEEEE
Q 037023 2 PAAVAPSRMFEAVILDCHNLFPKLAPHA-----FKSIDILEGDGGDGTLKRYDF-EV-LLNF---KTGTH--DNFSIKYT 69 (144)
Q Consensus 2 ~~~~~a~k~w~~~~~d~~~llpk~~P~~-----i~sve~~eGdG~~Gsir~l~~-~~-g~~~---~~~ke--~~~~~~y~ 69 (144)
.+++|+++||+++. +... +.+|.+.. ..+.++..| |..+ +.+ .+ |..+ ..+.+ ..+.+.|+
T Consensus 7 ~i~a~~e~Vw~a~t-~pe~-~~~W~~p~~~~~~~~~~d~~~G----G~~~-~~~~~~~g~~~~~~g~v~~i~p~~~l~~t 79 (146)
T cd08896 7 TIDAPRELVWRAWT-EPEL-LKQWFCPKPWTTEVAELDLRPG----GAFR-TVMRGPDGEEFPNPGCFLEVVPGERLVFT 79 (146)
T ss_pred EeCCCHHHHHHHcC-CHHH-HhccCCCCCccceEEEEEeecC----cEEE-EEEECCCCCEecceEEEEEEeCCCEEEEE
Confidence 57899999999995 8776 77887632 234454444 4433 344 22 3222 22333 45555555
Q ss_pred --EEec-CCCccceEEEEEEEEEEEcCCCceEEEEEEEEEEcCCCCCChhhh-hhHHHHHHHHHHHHHHHHh
Q 037023 70 --IYER-DGGWGIFEKVVYDIKFVASGDSGCIYKVAAECYLKAGEESKQEFV-KDSQEKGTSLYRAVESHLL 137 (144)
Q Consensus 70 --vieG-~~l~~~~~s~~~~~~v~p~~~ggs~v~w~~~ye~~~~~~~~~~~~-~~~~~~~~~~~k~ie~yl~ 137 (144)
.-++ ++-.... -..+++|++.+ ++|.++.+..+-... ..+... ....+.-..++..|++||.
T Consensus 80 ~~~~~~~~~~~~~~--~~v~~~~~~~~-~gT~Ltl~~~~~~~~---~~~~~~~~~~~~GW~~~l~~L~~~l~ 145 (146)
T cd08896 80 DALTPGWRPAEKPF--MTAIITFEDEG-GGTRYTARARHWTEA---DRKQHEEMGFHDGWGTAADQLAALAE 145 (146)
T ss_pred EeecCCcCCCCCCc--EEEEEEEEecC-CcEEEEEEEEeCCHH---HHHHHHHcCHHHHHHHHHHHHHHHHh
Confidence 3232 1211111 34678888865 578887764432110 000011 1112556677888888875
No 37
>PTZ00220 Activator of HSP-90 ATPase; Provisional
Probab=97.43 E-value=0.0019 Score=46.17 Aligned_cols=120 Identities=17% Similarity=0.204 Sum_probs=62.0
Q ss_pred cccCHHHHHHHHhhccccccccc-cCcceeEEEEecCCCCCCcEEEEEeecCceeeEEee-eceEEEEEEEecCCCccce
Q 037023 3 AAVAPSRMFEAVILDCHNLFPKL-APHAFKSIDILEGDGGDGTLKRYDFEVLLNFKTGTH-DNFSIKYTIYERDGGWGIF 80 (144)
Q Consensus 3 ~~~~a~k~w~~~~~d~~~llpk~-~P~~i~sve~~eGdG~~Gsir~l~~~~g~~~~~~ke-~~~~~~y~vieG~~l~~~~ 80 (144)
.+||+++||+++ .|... +.+| .+ ....+++..| |..+.+.-...+.+..+.. +...++++.-+.+. ..+
T Consensus 1 f~ap~e~Vw~A~-Tdp~~-l~~w~~~-~~~~~d~~~G----G~f~~~~~~~~G~~~ev~pp~rlv~tw~~~~~~~--~~~ 71 (132)
T PTZ00220 1 FYVPPEVLYNAF-LDAYT-LTRLSLG-SPAEMDAKVG----GKFSLFNGSVEGEFTELEKPKKIVQKWRFRDWEE--DVY 71 (132)
T ss_pred CCCCHHHHHHHH-cCHHH-HHHHhcC-CCccccCCcC----CEEEEecCceEEEEEEEcCCCEEEEEEecCCCCC--CCc
Confidence 379999999999 48775 6788 43 2334444444 4444321111122222222 44455555532111 122
Q ss_pred EEEEEEEEEEEcCCCceEEEEEEEEEEcCCC-C--CChhhhhhHHHHHHH-HHHHHHHHH
Q 037023 81 EKVVYDIKFVASGDSGCIYKVAAECYLKAGE-E--SKQEFVKDSQEKGTS-LYRAVESHL 136 (144)
Q Consensus 81 ~s~~~~~~v~p~~~ggs~v~w~~~ye~~~~~-~--~~~~~~~~~~~~~~~-~~k~ie~yl 136 (144)
+ .+++++++.++|+|.++.+-.-.+..+. . ...+... +.-.. ++..|++||
T Consensus 72 s--~vt~~~~~~~~g~T~lt~~~~g~~~~~~~~~~~~~~~~~---~GW~~~~ld~L~~~l 126 (132)
T PTZ00220 72 S--KVTIEFRAVEEDHTELKLTQTGIPSLDKFGNGGCLERCR---NGWTQNFLDRFEKIL 126 (132)
T ss_pred e--EEEEEEEeCCCCcEEEEEEEecCccccccCCCchhhHHH---hChHHHHHHHHHHHh
Confidence 2 3788999876667877776663322111 0 1122222 44445 578888776
No 38
>cd08876 START_1 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=97.37 E-value=0.01 Score=44.46 Aligned_cols=129 Identities=9% Similarity=0.044 Sum_probs=76.8
Q ss_pred ccccCHHHHHHHHhhccccccccccCcceeEEEEecCCCCCCcEEEEEeecCce-----eeEEe-e----eceEEEEEEE
Q 037023 2 PAAVAPSRMFEAVILDCHNLFPKLAPHAFKSIDILEGDGGDGTLKRYDFEVLLN-----FKTGT-H----DNFSIKYTIY 71 (144)
Q Consensus 2 ~~~~~a~k~w~~~~~d~~~llpk~~P~~i~sve~~eGdG~~Gsir~l~~~~g~~-----~~~~k-e----~~~~~~y~vi 71 (144)
.+++||+++|+++. |... .|+|.|. +.+++++|-.|.--.+-.+.+....+ +.... . ++..+...+.
T Consensus 48 ~i~~s~e~v~~vi~-d~e~-~~~w~~~-~~~~~vie~~~~~~~i~~~~~~~p~pvs~Rdfv~~~~~~~~~~~~~~~i~~~ 124 (195)
T cd08876 48 EVDASIEAFLALLR-DTES-YPQWMPN-CKESRVLKRTDDNERSVYTVIDLPWPVKDRDMVLRSTTEQDADDGSVTITLE 124 (195)
T ss_pred EEeCCHHHHHHHHh-hhHh-HHHHHhh-cceEEEeecCCCCcEEEEEEEecccccCCceEEEEEEEEEcCCCCEEEEEee
Confidence 47889999999995 9887 7999995 99999988764322333333332221 21111 1 1334434443
Q ss_pred ecCC-Cc--c---ceEEEEEEEEEEEcCCCceEEEEEEEEEEcCCCCCChhhhh-hHHHHHHHHHHHHHHH
Q 037023 72 ERDG-GW--G---IFEKVVYDIKFVASGDSGCIYKVAAECYLKAGEESKQEFVK-DSQEKGTSLYRAVESH 135 (144)
Q Consensus 72 eG~~-l~--~---~~~s~~~~~~v~p~~~ggs~v~w~~~ye~~~~~~~~~~~~~-~~~~~~~~~~k~ie~y 135 (144)
.++. .+ . ....+.....++|.++++|.++..+.+.+.+.. |.--+. .++..+..+++++.+.
T Consensus 125 s~~~~~P~~~~~vR~~~~~~~~~i~~~~~~~t~vt~~~~~dp~g~i--P~~lv~~~~~~~~~~~l~~l~~~ 193 (195)
T cd08876 125 AAPEALPEQKGYVRIKTVEGQWTFTPLGNGKTRVTYQAYADPGGSI--PGWLANAFAKDAPYNTLENLRKQ 193 (195)
T ss_pred cCCccCCCCCCeEEceeceeeEEEEECCCCeEEEEEEEEeCCCCCC--CHHHHHHHHHHHHHHHHHHHHHh
Confidence 3321 11 1 145566678889988788999999988887642 222222 2334445666666654
No 39
>cd08901 SRPBCC_CalC_Aha1-like_8 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=97.24 E-value=0.004 Score=44.33 Aligned_cols=119 Identities=17% Similarity=0.078 Sum_probs=66.0
Q ss_pred ccccCHHHHHHHHhhccccccccccCcceeEEEEecCCCCCCcEEEEEeecCc-ee-eEEee--eceEEEEEEEecCCCc
Q 037023 2 PAAVAPSRMFEAVILDCHNLFPKLAPHAFKSIDILEGDGGDGTLKRYDFEVLL-NF-KTGTH--DNFSIKYTIYERDGGW 77 (144)
Q Consensus 2 ~~~~~a~k~w~~~~~d~~~llpk~~P~~i~sve~~eGdG~~Gsir~l~~~~g~-~~-~~~ke--~~~~~~y~vieG~~l~ 77 (144)
.+++|++++|+++. +... +.+|.+. -.+.++..| |.+ .+.|...+ .+ ..+.+ ..+.+.|+--.++
T Consensus 7 ~i~ap~e~Vw~a~t-~p~~-l~~W~~~-~~~~~~~~G----g~~-~~~~~~~~~~~~g~~~~~~p~~~l~~~w~~~~--- 75 (136)
T cd08901 7 LIRRPVAEVFEAFV-DPEI-TTKFWFT-GSSGRLEEG----KTV-TWDWEMYGASVPVNVLEIEPNKRIVIEWGDPG--- 75 (136)
T ss_pred EecCCHHHHHHHhc-CHHH-hcccccc-CCCccccCC----CEE-EEEEEccCCceEEEEEEEcCCCEEEEEecCCC---
Confidence 57899999999995 8776 7787543 234444433 433 46665433 22 23333 6667777653221
Q ss_pred cceEEEEEEEEEEEcCCCceEEEEEEEEEEcCCCCCChhhh---hhHHHHHHHHHHHHHHHHhh
Q 037023 78 GIFEKVVYDIKFVASGDSGCIYKVAAECYLKAGEESKQEFV---KDSQEKGTSLYRAVESHLLA 138 (144)
Q Consensus 78 ~~~~s~~~~~~v~p~~~ggs~v~w~~~ye~~~~~~~~~~~~---~~~~~~~~~~~k~ie~yl~~ 138 (144)
... ..+++|.+.++|+|.++.+-..-+.. .++.. ......-..++..+++||..
T Consensus 76 -~~s--~v~~~l~~~~~ggT~ltl~~~~~~~~----~~~~~~~~~~~~~GW~~~L~~L~~~le~ 132 (136)
T cd08901 76 -EPT--TVEWTFEELDDGRTFVTITESGFPGT----DDEGLKQALGSTEGWTLVLAGLKAYLEH 132 (136)
T ss_pred -CCE--EEEEEEEECCCCcEEEEEEECCCCCC----cHHHHHHHhcCCCCHHHHHHHHHHHHhc
Confidence 222 26788888765678776664432211 11111 11124445667788887754
No 40
>cd08892 SRPBCC_Aha1 Putative hydrophobic ligand-binding SRPBCC domain of the Hsp90 co-chaperone Aha1 and related proteins. This subfamily includes the C-terminal SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Aha1, and related domains. Proteins in this group belong to the SRPBCC domain superfamily of proteins which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Aha1 is one of several co-chaperones, which regulate the dimeric chaperone Hsp90. Hsp90, Aha1, and other accessory proteins interact in a chaperone cycle driven by ATP binding and hydrolysis. Aha1 promotes dimerization of the N-terminal domains of Hsp90, and stimulates its low intrinsic ATPase activity. One Aha1 molecule binds per Hsp90 dimer. The N- and C- terminal domains of Aha1 cooperatively bind across the dimer interface of Hsp90. The C-terminal domain of Aha1 binds the N-terminal Hsp90 ATPase domain. Aha1 may regulate the dwell time of Hsp90 with client proteins. Aha1 m
Probab=97.01 E-value=0.011 Score=41.57 Aligned_cols=114 Identities=11% Similarity=0.062 Sum_probs=60.5
Q ss_pred ccccCHHHHHHHHhhccccccccccCcceeEEEEecCCCCCCcEEEEEeecCceeeEEee--eceEEEEEEE-ecCCCcc
Q 037023 2 PAAVAPSRMFEAVILDCHNLFPKLAPHAFKSIDILEGDGGDGTLKRYDFEVLLNFKTGTH--DNFSIKYTIY-ERDGGWG 78 (144)
Q Consensus 2 ~~~~~a~k~w~~~~~d~~~llpk~~P~~i~sve~~eGdG~~Gsir~l~~~~g~~~~~~ke--~~~~~~y~vi-eG~~l~~ 78 (144)
.+++|+++||+++. +... +.+|... ..+++...| |..+ +..|.-...+.+ .++.+.|+-- ++.+..
T Consensus 7 ~i~ap~e~Vw~A~T-~~e~-l~~W~~~-~~~~d~~~G----G~~~---~~~g~~~g~~~~i~p~~~l~~~w~~~~~~~~- 75 (126)
T cd08892 7 TFQVPAEELYEALT-DEER-VQAFTRS-PAKVDAKVG----GKFS---LFGGNITGEFVELVPGKKIVQKWRFKSWPEG- 75 (126)
T ss_pred EECCCHHHHHHHHC-CHHH-HHhhcCC-CceecCCCC----CEEE---EeCCceEEEEEEEcCCCEEEEEEEcCCCCCC-
Confidence 57899999999995 8776 7899853 445555554 4443 333321122333 4544544432 221211
Q ss_pred ceEEEEEEEEEEEcCCCceEEEEEEEEEEcCCCCCChhhhhhHHHHHH-HHHHHHHHHH
Q 037023 79 IFEKVVYDIKFVASGDSGCIYKVAAECYLKAGEESKQEFVKDSQEKGT-SLYRAVESHL 136 (144)
Q Consensus 79 ~~~s~~~~~~v~p~~~ggs~v~w~~~ye~~~~~~~~~~~~~~~~~~~~-~~~k~ie~yl 136 (144)
.. -..++.|++. +++|.++.+-...+.. ..+.. .+.-. .++..|.++|
T Consensus 76 ~~--s~v~~~l~~~-~~gT~ltl~~~g~~~~----~~~~~---~~GW~~~~~~~l~~~~ 124 (126)
T cd08892 76 HY--STVTLTFTEK-DDETELKLTQTGVPAG----EEERT---REGWERYYFESIKQTF 124 (126)
T ss_pred Cc--EEEEEEEEEC-CCCEEEEEEEECCCCc----hHHHH---HhhHHHHHHHHHHHHh
Confidence 12 2377888886 4567666555433221 11222 23333 3667776665
No 41
>cd08891 SRPBCC_CalC Ligand-binding SRPBCC domain of Micromonospora echinospora CalC and related proteins. This subfamily includes Micromonospora echinospora CalC (MeCalC) and related proteins. These proteins belong to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM). Enediyne antibiotics are antitumor agents. Enediynes have an in vitro and in vivo role as DNA damaging agents; they consist of a DNA recognition unit (e.g., aryltetrasaccharide of CLM), an activating component (e.g., methyl trisulfide of CLM), which promotes cycloaromatization, and the enediyne warhead which cycloaromatizes to a reactive diradical species, resulting in oxidative strand cleavage of the targeted DNA sequence. MeCalC confers resistance to CLM by a self sacrificing mechanism: the transient enediyne diradical speci
Probab=97.00 E-value=0.025 Score=40.68 Aligned_cols=123 Identities=13% Similarity=0.091 Sum_probs=62.6
Q ss_pred ccccCHHHHHHHHhhccccccccccCcce---------eEEEEecCCCCCCcEEEEEeecCcee---eEEee--eceEEE
Q 037023 2 PAAVAPSRMFEAVILDCHNLFPKLAPHAF---------KSIDILEGDGGDGTLKRYDFEVLLNF---KTGTH--DNFSIK 67 (144)
Q Consensus 2 ~~~~~a~k~w~~~~~d~~~llpk~~P~~i---------~sve~~eGdG~~Gsir~l~~~~g~~~---~~~ke--~~~~~~ 67 (144)
.++||+++||+++. | . +.+|.+..- ..++...| |..+ +. ..++.. ..+.+ .++.+.
T Consensus 7 ~i~Ap~e~Vw~a~t-~--~-l~~W~~p~~~~~~~~~~~~~~d~~~G----G~~~-~~-~~~g~~~~~g~v~~v~p~~~l~ 76 (149)
T cd08891 7 TVPAPPERAFEVFT-E--G-FGAWWPPEYHFVFSPGAEVVFEPRAG----GRWY-EI-GEDGTECEWGTVLAWEPPSRLV 76 (149)
T ss_pred EecCCHHHHHHHHH-h--c-hhhccCCCcccccCCCccEEEcccCC----cEEE-Ee-cCCCcEeceEEEEEEcCCCEEE
Confidence 68999999999995 6 2 667765321 12222222 4433 22 222321 12233 555666
Q ss_pred EEEE-e--cCCCccceEEEEEEEEEEEcCCCceEEEEEEEEEEcCCCC-CChhhhhhHHHHHHHHHHHHHHHH
Q 037023 68 YTIY-E--RDGGWGIFEKVVYDIKFVASGDSGCIYKVAAECYLKAGEE-SKQEFVKDSQEKGTSLYRAVESHL 136 (144)
Q Consensus 68 y~vi-e--G~~l~~~~~s~~~~~~v~p~~~ggs~v~w~~~ye~~~~~~-~~~~~~~~~~~~~~~~~k~ie~yl 136 (144)
|+-- . +++..... -..+++|++.++++|.++.+-.+....... ............-..++..|++||
T Consensus 77 ~tw~~~~~~~~~~~~~--t~vt~~l~~~~~~gT~ltl~~~~~~~~~~~~~~~~~~~~~~~GW~~~L~~L~~~l 147 (149)
T cd08891 77 FTWQINADWRPDPDKA--SEVEVRFEAVGAEGTRVELEHRGFERHGDGWEAAAMRMGYDGGWPLLLERYAAAA 147 (149)
T ss_pred EEeccCCCcCcCCCCc--eEEEEEEEECCCCCeEEEEEEecccccCcchhhHHHHhcccCcHHHHHHHHHHHh
Confidence 6533 1 11111112 247889999764678888777765432110 011111112244456777777776
No 42
>COG2867 Oligoketide cyclase/lipid transport protein [Lipid metabolism]
Probab=96.50 E-value=0.011 Score=43.41 Aligned_cols=98 Identities=18% Similarity=0.293 Sum_probs=69.8
Q ss_pred cccCHHHHHHHHhhccccccccccCcceeEEEEecCCCCCCcEEEEEeecCc-e--ee---EEeeeceEEEEEEEecCCC
Q 037023 3 AAVAPSRMFEAVILDCHNLFPKLAPHAFKSIDILEGDGGDGTLKRYDFEVLL-N--FK---TGTHDNFSIKYTIYERDGG 76 (144)
Q Consensus 3 ~~~~a~k~w~~~~~d~~~llpk~~P~~i~sve~~eGdG~~Gsir~l~~~~g~-~--~~---~~ke~~~~~~y~vieG~~l 76 (144)
++-+|+++|+++. |-.. .|+.+|. -.+.++.+.++. .-+=.++.+-++ . +. .++...++|.-++++|+
T Consensus 10 v~y~a~~mF~LV~-dV~~-YP~FlP~-C~~s~v~~~~~~-~l~A~l~V~~k~i~e~F~Trv~~~~~~~~I~~~l~~GP-- 83 (146)
T COG2867 10 VPYSASQMFDLVN-DVES-YPEFLPW-CSASRVLERNER-ELIAELDVGFKGIRETFTTRVTLKPTARSIDMKLIDGP-- 83 (146)
T ss_pred ccCCHHHHHHHHH-HHHh-Cchhccc-cccceEeccCcc-eeEEEEEEEhhheeeeeeeeeeecCchhhhhhhhhcCC--
Confidence 5679999999996 8887 8999995 888888888742 233334443222 1 11 11113347777777774
Q ss_pred ccceEEEEEEEEEEEcCCCceEEEEEEEEEEcC
Q 037023 77 WGIFEKVVYDIKFVASGDSGCIYKVAAECYLKA 109 (144)
Q Consensus 77 ~~~~~s~~~~~~v~p~~~ggs~v~w~~~ye~~~ 109 (144)
++....+.+|+|-++++|.|+..++||-.+
T Consensus 84 ---Fk~L~~~W~F~pl~~~~ckV~f~ldfeF~s 113 (146)
T COG2867 84 ---FKYLKGGWQFTPLSEDACKVEFFLDFEFKS 113 (146)
T ss_pred ---hhhhcCceEEEECCCCceEEEEEEEeeehh
Confidence 555678899999877899999999999876
No 43
>COG3832 Uncharacterized conserved protein [Function unknown]
Probab=96.11 E-value=0.22 Score=36.23 Aligned_cols=127 Identities=17% Similarity=0.068 Sum_probs=61.0
Q ss_pred ccccCHHHHHHHHhhccccccccccCcceeEEEEecCCCCCCcEEEEEeecCce----eeEEee-eceEEEEEEEecCCC
Q 037023 2 PAAVAPSRMFEAVILDCHNLFPKLAPHAFKSIDILEGDGGDGTLKRYDFEVLLN----FKTGTH-DNFSIKYTIYERDGG 76 (144)
Q Consensus 2 ~~~~~a~k~w~~~~~d~~~llpk~~P~~i~sve~~eGdG~~Gsir~l~~~~g~~----~~~~ke-~~~~~~y~vieG~~l 76 (144)
.+++|+++||+++. |... +++|....=...++.-| .+....+....|.. ..+.+- .++.|.|+-.-.+.-
T Consensus 15 ~i~aP~e~Vf~A~T-dpe~-l~~W~~~~~~~~d~r~g---g~~~~~~~~~~g~~~~~~~~~~~v~p~~rIv~tw~~~~~~ 89 (149)
T COG3832 15 LIDAPPEKVFEALT-DPEL-LARWFMPGGAEFDARTG---GGERVRFRGPDGPVHSFEGEYLEVVPPERIVFTWDFDEDG 89 (149)
T ss_pred eecCCHHHHHHHhc-CHHH-HHhhcCCCCCccceecC---CceEEeeecCCCCeeecceEEEEEcCCcEEEEEeccCCCC
Confidence 57999999999995 8775 89999721011222222 12222333333311 122222 555455554332211
Q ss_pred ccceEEEEEEEEEEEcCCCceEEEEEEEEEEcCCCCCChhhhhhH--HHHHHHHHHHHHHHHh
Q 037023 77 WGIFEKVVYDIKFVASGDSGCIYKVAAECYLKAGEESKQEFVKDS--QEKGTSLYRAVESHLL 137 (144)
Q Consensus 77 ~~~~~s~~~~~~v~p~~~ggs~v~w~~~ye~~~~~~~~~~~~~~~--~~~~~~~~k~ie~yl~ 137 (144)
. ....=..++++++..+|+ +++..........++....+.. .+....++..++++|.
T Consensus 90 ~-~~~~~~v~~~l~~~~~g~---~~~~~~~~~~~~~~~~~~~~~~~~~~Gw~~~~~~l~~~l~ 148 (149)
T COG3832 90 E-PFLKSLVTITLTPEDDGG---TTTLVRTSGGGFLEDEDQKLGMGMEEGWGQLLDNLKALLE 148 (149)
T ss_pred C-cccCceEEEEEEEecCCC---cEEEEEEeeccccchhHHHhCcchhhhHHHHHHHHHHhhc
Confidence 0 111222677777766654 3333344333222222211111 4556677777777764
No 44
>cd08873 START_STARD14_15-like Lipid-binding START domain of mammalian STARDT14, -15, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974), STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 and STARD15/ACOT12 are type II acetyl-CoA thioesterases; they catalyze the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. Rat CACH hydrolyzes acetyl-CoA to acetate an
Probab=93.26 E-value=3.4 Score=32.72 Aligned_cols=132 Identities=13% Similarity=0.077 Sum_probs=78.5
Q ss_pred ccccCHHHHHHHHhhccccccccccCcceeEEEEecCCC-CCCcEEEEEeec---Cce--eeEE---ee--ec---eEEE
Q 037023 2 PAAVAPSRMFEAVILDCHNLFPKLAPHAFKSIDILEGDG-GDGTLKRYDFEV---LLN--FKTG---TH--DN---FSIK 67 (144)
Q Consensus 2 ~~~~~a~k~w~~~~~d~~~llpk~~P~~i~sve~~eGdG-~~Gsir~l~~~~---g~~--~~~~---ke--~~---~~~~ 67 (144)
.+++|++++|.++. |... -++|.++ ..++++++--+ ..+ +-.+.+.. -.+ +... .. +. .++.
T Consensus 84 ~vd~s~~~v~dlL~-D~~~-R~~WD~~-~~e~evI~~id~d~~-iyy~~~p~PwPvk~RDfV~~~s~~~~~~~~~~~~I~ 159 (235)
T cd08873 84 KVQTCASDAFDLLS-DPFK-RPEWDPH-GRSCEEVKRVGEDDG-IYHTTMPSLTSEKPNDFVLLVSRRKPATDGDPYKVA 159 (235)
T ss_pred EecCCHHHHHHHHh-Ccch-hhhhhhc-ccEEEEEEEeCCCcE-EEEEEcCCCCCCCCceEEEEEEEEeccCCCCeEEEE
Confidence 46899999999995 9887 7999995 88999887322 223 22233321 111 2111 11 11 2333
Q ss_pred EEEEecC--CC-c--cceEEEEEEEEEEEcCCCceEEEEEEEEEEcC-CCCCChhhhhhHHHHHHHHHHHHHHHHhhC
Q 037023 68 YTIYERD--GG-W--GIFEKVVYDIKFVASGDSGCIYKVAAECYLKA-GEESKQEFVKDSQEKGTSLYRAVESHLLAN 139 (144)
Q Consensus 68 y~vieG~--~l-~--~~~~s~~~~~~v~p~~~ggs~v~w~~~ye~~~-~~~~~~~~~~~~~~~~~~~~k~ie~yl~~~ 139 (144)
..-+.-+ |. . -....+.+-..++|.++++|.++....-+|.- +... .++-..-..+-..|.+.++||..|
T Consensus 160 ~~SV~h~~~Pp~kgyVR~~~~~ggW~I~p~~~~~t~VtY~~~~dPg~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 235 (235)
T cd08873 160 FRSVTLPRVPQTPGYSRTEVACAGFVIRQDCGTCTEVSYYNETNPKLLSYVT--CNLAGLSALYCRTFHCCEQFLVTN 235 (235)
T ss_pred EeeeecccCCCCCCeEEEEEEeeeEEEEECCCCcEEEEEEEEcCCCccceee--ecchhhhHHHHHHHHHHHHHhccC
Confidence 3333311 11 0 14677888899999988889888777766642 2111 123222245567789999999865
No 45
>cd08868 START_STARD1_3_like Cholesterol-binding START domain of mammalian STARD1, -3 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and STARD3 (also known as metastatic lymph node 64/MLN64). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. This STARD1-like subfamily has a high affinity for cholesterol. STARD1/StAR can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synth
Probab=92.73 E-value=3.4 Score=31.36 Aligned_cols=134 Identities=9% Similarity=-0.003 Sum_probs=74.1
Q ss_pred ccccCHHHHHHHHhhccccccccccCcceeEEEEecCC-CCCCcEEEEEeecC-ce-----eeEEee----e-ceEEEEE
Q 037023 2 PAAVAPSRMFEAVILDCHNLFPKLAPHAFKSIDILEGD-GGDGTLKRYDFEVL-LN-----FKTGTH----D-NFSIKYT 69 (144)
Q Consensus 2 ~~~~~a~k~w~~~~~d~~~llpk~~P~~i~sve~~eGd-G~~Gsir~l~~~~g-~~-----~~~~ke----~-~~~~~y~ 69 (144)
.+++|++++|+.+..|.+. .++|.+. +..+++++-- +..--+...+..+. .+ +..+.. + ...+...
T Consensus 55 ~i~~~~~~v~~~l~~d~~~-~~~Wd~~-~~~~~~i~~~d~~~~i~y~~~~~~~~~~vs~RDfV~~r~~~~~~~~~~i~~~ 132 (208)
T cd08868 55 VLDCPAEFLYNELVLNVES-LPSWNPT-VLECKIIQVIDDNTDISYQVAAEAGGGLVSPRDFVSLRHWGIRENCYLSSGV 132 (208)
T ss_pred EEcCCHHHHHHHHHcCccc-cceecCc-ccceEEEEEecCCcEEEEEEecCcCCCcccccceEEEEEEEecCCeEEEEEE
Confidence 4689999999765457776 8999995 7777776653 21111122221121 22 222222 2 2222233
Q ss_pred EEecCCC---cc--ceEEEEEEEEEEEcCC--CceEEEEEEEEEEcCCCCCChhhhhhHHHHHHHHHHHHHHHHhh
Q 037023 70 IYERDGG---WG--IFEKVVYDIKFVASGD--SGCIYKVAAECYLKAGEESKQEFVKDSQEKGTSLYRAVESHLLA 138 (144)
Q Consensus 70 vieG~~l---~~--~~~s~~~~~~v~p~~~--ggs~v~w~~~ye~~~~~~~~~~~~~~~~~~~~~~~k~ie~yl~~ 138 (144)
-++-+-+ .. ....+.+-+.++|.++ ++|.++|.+...++|.-+.-- --..+......+++.+..++.+
T Consensus 133 sv~h~~~P~~~g~VR~~~~~~~~~i~p~~~~~~~t~v~~~~~~Dp~G~iP~~l-vN~~~~~~~~~~~~~Lr~~~~~ 207 (208)
T cd08868 133 SVEHPAMPPTKNYVRGENGPGCWILRPLPNNPNKCNFTWLLNTDLKGWLPQYL-VDQALASVLLDFMKHLRKRIAT 207 (208)
T ss_pred eccCCCCCCCCCeEEEeccccEEEEEECCCCCCceEEEEEEEECCCCCCccee-eehhhHHHHHHHHHHHHHHHhh
Confidence 2332211 11 2344456677888654 578999999988887543222 1222456677888888887753
No 46
>cd00177 START Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins. This family includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and related domains, such as the START domain of the Arabidopsis homeobox protein GLABRA 2. The mammalian STARDs are grouped into 8 subfamilies. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some members of this family, specific lipids that bind in this pocket are known; these include cholesterol (STARD1/STARD3/ STARD4/STARD5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2/ STARD7/STARD10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). The START domain is found either alone or in association with other domains. Mammalian STARDs participate in the control of various cellular pro
Probab=90.06 E-value=5.7 Score=28.74 Aligned_cols=107 Identities=12% Similarity=0.066 Sum_probs=63.7
Q ss_pred ccccCHHHHHHHHhhccccccccccCcceeEEEEecCCCCCCcEEEEEeecCcee-----eEEee----e-ce-EEEEEE
Q 037023 2 PAAVAPSRMFEAVILDCHNLFPKLAPHAFKSIDILEGDGGDGTLKRYDFEVLLNF-----KTGTH----D-NF-SIKYTI 70 (144)
Q Consensus 2 ~~~~~a~k~w~~~~~d~~~llpk~~P~~i~sve~~eGdG~~Gsir~l~~~~g~~~-----~~~ke----~-~~-~~~y~v 70 (144)
++++|++++|+++. |... .++|-|. +.+.++++-.+..-.+....+....++ ..+.. . +. .+...-
T Consensus 46 ~i~~~~~~v~~~l~-d~~~-~~~w~~~-~~~~~vl~~~~~~~~i~~~~~~~p~p~~~Rdfv~~~~~~~~~~~~~~~~~~S 122 (193)
T cd00177 46 VIPASPEQVFELLM-DIDL-RKKWDKN-FEEFEVIEEIDEHTDIIYYKTKPPWPVSPRDFVYLRRRRKLDDGTYVIVSKS 122 (193)
T ss_pred EECCCHHHHHHHHh-CCch-hhchhhc-ceEEEEEEEeCCCeEEEEEEeeCCCccCCccEEEEEEEEEcCCCeEEEEEee
Confidence 46789999999995 8665 7899984 899998887543334444444433221 11111 2 21 222222
Q ss_pred EecCCCc---cceE--EEEEEEEEEEcCCCceEEEEEEEEEEcCCC
Q 037023 71 YERDGGW---GIFE--KVVYDIKFVASGDSGCIYKVAAECYLKAGE 111 (144)
Q Consensus 71 ieG~~l~---~~~~--s~~~~~~v~p~~~ggs~v~w~~~ye~~~~~ 111 (144)
++.+..+ +... .+.+-+.++|.++++|.+++.....+.+..
T Consensus 123 i~~~~~p~~~~~vR~~~~~~~~~i~~~~~~~~~vt~~~~~D~~g~i 168 (193)
T cd00177 123 VDHDSHPKEKGYVRAEIKLSGWIIEPLDPGKTKVTYVLQVDPKGSI 168 (193)
T ss_pred cCCCCCCCCCCcEEEEEEccEEEEEECCCCCEEEEEEEeeCCCCCc
Confidence 2221111 1222 223456788887788999999999888753
No 47
>cd08905 START_STARD1-like Cholesterol-binding START domain of mammalian STARD1 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD1 has a high affinity for cholesterol. It can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synthesis deficiency and an accumulation of cholesterol in
Probab=89.24 E-value=8.3 Score=29.51 Aligned_cols=132 Identities=11% Similarity=-0.011 Sum_probs=73.1
Q ss_pred ccccCHHHHHHHHhhccccccccccCcceeEEEEecCCCCCCc--EEEEEee-cCcee-----eE---Eee--eceEEEE
Q 037023 2 PAAVAPSRMFEAVILDCHNLFPKLAPHAFKSIDILEGDGGDGT--LKRYDFE-VLLNF-----KT---GTH--DNFSIKY 68 (144)
Q Consensus 2 ~~~~~a~k~w~~~~~d~~~llpk~~P~~i~sve~~eGdG~~Gs--ir~l~~~-~g~~~-----~~---~ke--~~~~~~y 68 (144)
.+++|++++++++..|..+ .|+|.+. +.++++++--+ ..+ ++.++.. +++.+ .. .+. .+..+..
T Consensus 56 ~i~~~~~~l~~~l~~d~e~-~~~W~~~-~~~~~vl~~id-~~~~i~y~~~~p~p~~~vs~RD~V~~~~~~~~~~~~~~~~ 132 (209)
T cd08905 56 VVDQPLDNLYSELVDRMEQ-MGEWNPN-VKEVKILQRIG-KDTLITHEVAAETAGNVVGPRDFVSVRCAKRRGSTCVLAG 132 (209)
T ss_pred EecCCHHHHHHHHHhchhh-hceeccc-chHHHHHhhcC-CCceEEEEEeccCCCCccCccceEEEEEEEEcCCcEEEEE
Confidence 4789999999665447676 7999995 88888776532 122 2222111 11112 11 111 2222111
Q ss_pred EEEecCCCc---c--ceEEEEEEEEEEEcCC--CceEEEEEEEEEEcCCCCCChhhhhhHHHHHHHHHHHHHHHHh
Q 037023 69 TIYERDGGW---G--IFEKVVYDIKFVASGD--SGCIYKVAAECYLKAGEESKQEFVKDSQEKGTSLYRAVESHLL 137 (144)
Q Consensus 69 ~vieG~~l~---~--~~~s~~~~~~v~p~~~--ggs~v~w~~~ye~~~~~~~~~~~~~~~~~~~~~~~k~ie~yl~ 137 (144)
...+-+-++ . ......+-..++|.++ +.|.++|.+-.+++|.- |..-.-..+.+....+++.+.++|.
T Consensus 133 ~s~~~~~~P~~~~~VR~~~~~~~w~l~p~~~~~~~t~v~~~~~~DpkG~i-P~~lvN~~~~~~~~~~~~~Lr~~~~ 207 (209)
T cd08905 133 MATHFGLMPEQKGFIRAENGPTCIVLRPLAGDPSKTKLTWLLSIDLKGWL-PKSIINQVLSQTQVDFANHLRQRMA 207 (209)
T ss_pred EeecCCCCCCCCCeEEEEeeccEEEEEECCCCCCceEEEEEEeecCCCCC-CHHHHHHHhHHhHHHHHHHHHHHHh
Confidence 111222111 1 2344556677888765 68999999999998863 2222222345666677777777764
No 48
>cd08874 START_STARD9-like C-terminal START domain of mammalian STARD9, and related domains; lipid binding. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD9 (also known as KIAA1300), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C /PITP /Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Some members of this subfamily have N-terminal kinesin motor domains. STARD9 interacts with supervillin, a protein important for efficient cytokinesis, perhaps playing a role in coordinating microtubule motors with actin and myosin II functions at membranes. The human gene encoding STARD9 lies within a target region for LGMD2A, an autosomal recessive form of limb-girdle muscular dystrophy.
Probab=88.82 E-value=9.2 Score=29.48 Aligned_cols=111 Identities=14% Similarity=-0.070 Sum_probs=67.7
Q ss_pred ccccCHHHHHHHHhhccccccccccCcceeEEEEecCCCCCCcEEEEEee-c--C--ce--ee----EEee-eceEEEEE
Q 037023 2 PAAVAPSRMFEAVILDCHNLFPKLAPHAFKSIDILEGDGGDGTLKRYDFE-V--L--LN--FK----TGTH-DNFSIKYT 69 (144)
Q Consensus 2 ~~~~~a~k~w~~~~~d~~~llpk~~P~~i~sve~~eGdG~~Gsir~l~~~-~--g--~~--~~----~~ke-~~~~~~y~ 69 (144)
++++|++++|+.+. |... -++|.+ .+++.++++--+.--.|-.+.+. + . .+ +. ..++ +...+.-+
T Consensus 52 ~v~as~~~v~~ll~-D~~~-r~~Wd~-~~~~~~vl~~~~~d~~i~y~~~~~Pwp~~~~~RDfV~l~~~~~~~~~~vi~~~ 128 (205)
T cd08874 52 VIKAPLATVWKAVK-DPRT-RFLYDT-MIKTARIHKTFTEDICLVYLVHETPLCLLKQPRDFCCLQVEAKEGELSVVACQ 128 (205)
T ss_pred EEcCCHHHHHHHHh-Ccch-hhhhHH-hhhheeeeeecCCCeEEEEEEecCCCCCCCCCCeEEEEEEEEECCCcEEEEEE
Confidence 47899999999995 9887 799999 69999998853322233333332 2 1 11 21 1112 33233333
Q ss_pred EEecCCC--c----cceEEEEEEEEEEEc---CCCceEEEEEEEEEEcCCCCCCh
Q 037023 70 IYERDGG--W----GIFEKVVYDIKFVAS---GDSGCIYKVAAECYLKAGEESKQ 115 (144)
Q Consensus 70 vieG~~l--~----~~~~s~~~~~~v~p~---~~ggs~v~w~~~ye~~~~~~~~~ 115 (144)
-++-+.+ . -....+.+-..++|. ++|.|.++....-++.|++.|..
T Consensus 129 SV~~~~~P~~~~~~VR~~~~~~gw~i~P~~~~g~~~t~vty~~q~DPggg~iP~~ 183 (205)
T cd08874 129 SVYDKSMPEPGRSLVRGEILPSAWILEPVTVEGNQYTRVIYIAQVALCGPDVPAQ 183 (205)
T ss_pred ecccccCCCCCCCeEEeeeEeeeEEEEECccCCCCcEEEEEEEEECCCCCCCCHH
Confidence 3332111 1 134566677788887 66789999888888886555544
No 49
>cd08863 SRPBCC_DUF1857 DUF1857, an uncharacterized ligand-binding domain of the SRPBCC domain superfamily. Uncharacterized family of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins
Probab=88.73 E-value=7.6 Score=28.42 Aligned_cols=110 Identities=13% Similarity=0.183 Sum_probs=62.2
Q ss_pred cCHHHHHHHHhhccccccccccCcceeEEEEecCCCCCCcEEEEEeecCceee-EEe-eeceEEEEEEEe-cCCCccceE
Q 037023 5 VAPSRMFEAVILDCHNLFPKLAPHAFKSIDILEGDGGDGTLKRYDFEVLLNFK-TGT-HDNFSIKYTIYE-RDGGWGIFE 81 (144)
Q Consensus 5 ~~a~k~w~~~~~d~~~llpk~~P~~i~sve~~eGdG~~Gsir~l~~~~g~~~~-~~k-e~~~~~~y~vie-G~~l~~~~~ 81 (144)
...+++|+-+....-+ --...| .+.+|++++.++. -..|.++|+.+ ++. .+. +....+.|.+-. |+.
T Consensus 17 LTr~QlW~GL~~kar~-p~~Fvp-~i~~c~Vl~e~~~-~l~Rel~f~~~-~v~e~vt~~~~~~v~f~~~~~g~~------ 86 (141)
T cd08863 17 LTRAQLWRGLVLRARE-PQLFVP-GLDRCEVLSESGT-VLERELTFGPA-KIRETVTLEPPSRVHFLQADAGGT------ 86 (141)
T ss_pred cCHHHHHhHHHhhhCC-chhccc-ccceEEEEecCCC-EEEEEEEECCc-eEEEEEEecCCcEEEEEecCCCCe------
Confidence 5678999988744443 123445 5999999988752 34599999864 332 111 166777887765 322
Q ss_pred EEEEEEEEEEcCCCceEEEEEEEEEEcCCCCCChhhhhhHHHHHHHHHH
Q 037023 82 KVVYDIKFVASGDSGCIYKVAAECYLKAGEESKQEFVKDSQEKGTSLYR 130 (144)
Q Consensus 82 s~~~~~~v~p~~~ggs~v~w~~~ye~~~~~~~~~~~~~~~~~~~~~~~k 130 (144)
.++.+.... +|. .-.+..|+.......+++ .++..+....+++
T Consensus 87 ---l~~~iee~~-~g~-L~lrf~ye~~~p~~~~~e-~~~~~~~~~~a~~ 129 (141)
T cd08863 87 ---LTNTIEEPE-DGA-LYLRFVYETTLPEVAEEE-AKAYQEIVKQAYK 129 (141)
T ss_pred ---EEEEeccCC-CCc-EEEEEEEEecCCCcCchH-HHHHHHHHHHHHH
Confidence 233443333 333 566888887553322232 3223344444443
No 50
>cd08913 START_STARD14-like Lipid-binding START domain of mammalian STARDT14 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. There are two splice variants of
Probab=85.61 E-value=16 Score=28.91 Aligned_cols=133 Identities=14% Similarity=0.006 Sum_probs=72.8
Q ss_pred ccccCHHHHHHHHhhccccccccccCcceeEEEEecCCCCCCcEEEEEeecC-cee-----eEE----ee-ece---EEE
Q 037023 2 PAAVAPSRMFEAVILDCHNLFPKLAPHAFKSIDILEGDGGDGTLKRYDFEVL-LNF-----KTG----TH-DNF---SIK 67 (144)
Q Consensus 2 ~~~~~a~k~w~~~~~d~~~llpk~~P~~i~sve~~eGdG~~Gsir~l~~~~g-~~~-----~~~----ke-~~~---~~~ 67 (144)
.+++|++++++++. |... .|+|.++ +.++++++--+.--.+..++-.+- +++ ... +. ++. .+.
T Consensus 88 ~vd~s~e~v~~lL~-D~~~-r~~Wd~~-~~e~~vIe~id~~~~vY~v~~~p~~~pvs~RDfV~~~s~~~~~~~g~~yii~ 164 (240)
T cd08913 88 VVHVDAAQAFLLLS-DLRR-RPEWDKH-YRSCELVQQVDEDDAIYHVTSPSLSGHGKPQDFVILASRRKPCDNGDPYVIA 164 (240)
T ss_pred EEcCCHHHHHHHHh-Chhh-hhhhHhh-ccEEEEEEecCCCcEEEEEecCCCCCCCCCCeEEEEEEEEeccCCCccEEEE
Confidence 46899999999994 9988 8999995 888888765331112554443321 222 111 21 222 132
Q ss_pred EEEEecCCC---c--cceEEEEEEEEEEEcCCCceEEEEEEEEEEcCCCCCChh-hhhhHHHHHHHHHHHHHHHHhhC
Q 037023 68 YTIYERDGG---W--GIFEKVVYDIKFVASGDSGCIYKVAAECYLKAGEESKQE-FVKDSQEKGTSLYRAVESHLLAN 139 (144)
Q Consensus 68 y~vieG~~l---~--~~~~s~~~~~~v~p~~~ggs~v~w~~~ye~~~~~~~~~~-~~~~~~~~~~~~~k~ie~yl~~~ 139 (144)
.+...-+-+ . -...++.+-..+.|.+++.|.+++...=.+ | ..|.-- +.-......-..+.+..+||++|
T Consensus 165 ~~sv~~P~~Pp~kgyVR~~~~~ggw~i~p~~~~~t~vtY~~~~dP-G-~LP~~~~N~~~~~~p~~~~~~~~~~~~~~~ 240 (240)
T cd08913 165 LRSVTLPTHPPTPEYTRGETLCSGFCIWEESDQLTKVSYYNQATP-G-VLPYISTDIAGLSSEFYSTFSACSQFLLDN 240 (240)
T ss_pred EEEeecCCCCCCCCcEEeeecccEEEEEECCCCcEEEEEEEEeCC-c-cccHHHhhhhhhccchhHHHHHHHHHhhcC
Confidence 333322111 1 134566677888898888888776443333 2 333221 22111222345677777787754
No 51
>PF08982 DUF1857: Domain of unknown function (DUF1857); InterPro: IPR015075 This protein has no known function. It is found in various hypothetical bacterial and fungal proteins. ; PDB: 2FFS_B.
Probab=81.60 E-value=18 Score=26.51 Aligned_cols=90 Identities=10% Similarity=0.139 Sum_probs=46.3
Q ss_pred ccCHHHHHHHHhhccccccccccCcceeEEEEecCCCCCCcEEEEEeecCceee-EEee-eceEEEEEEEecCCCccceE
Q 037023 4 AVAPSRMFEAVILDCHNLFPKLAPHAFKSIDILEGDGGDGTLKRYDFEVLLNFK-TGTH-DNFSIKYTIYERDGGWGIFE 81 (144)
Q Consensus 4 ~~~a~k~w~~~~~d~~~llpk~~P~~i~sve~~eGdG~~Gsir~l~~~~g~~~~-~~ke-~~~~~~y~vieG~~l~~~~~ 81 (144)
..+.+++|+-+.....+ --..+| .|.+|++++-. +..-.|.++|+ +..+. .+.. ....+.|....| .
T Consensus 17 ~LTr~QlW~GL~~kar~-p~~Fvp-~i~~c~Vl~e~-~~~~~R~v~fg-~~~v~E~v~~~~~~~V~f~~~~G-------s 85 (149)
T PF08982_consen 17 VLTREQLWRGLVLKARN-PQLFVP-GIDSCEVLSES-DTVLTREVTFG-GATVRERVTLYPPERVDFAQHDG-------S 85 (149)
T ss_dssp ---HHHHHHHHHHHHH--GGGT-T-T--EEEEEEE--SSEEEEEEEET-TEEEEEEEEEETTTEEEESSSBE-------E
T ss_pred ccCHHHHHHHHHHHHhC-hhhCcc-ccCeEEEEecC-CCeEEEEEEEC-CcEEEEEEEEeCCcEEEEEcCCC-------C
Confidence 35678999988743333 224556 69999999775 34566999992 33333 2221 667777822112 1
Q ss_pred EEEEEEEEEEcCCCceEEEEEEEEEEc
Q 037023 82 KVVYDIKFVASGDSGCIYKVAAECYLK 108 (144)
Q Consensus 82 s~~~~~~v~p~~~ggs~v~w~~~ye~~ 108 (144)
+...+|. +| + .| -.-.+..|+..
T Consensus 86 ~lt~~I~-e~-~-~g-~L~ltf~ye~~ 108 (149)
T PF08982_consen 86 SLTNIIS-EP-E-PG-DLFLTFTYEWR 108 (149)
T ss_dssp EEEEEEE-EE-E-TT-EEEEEEEEEEE
T ss_pred EEEEEEe-cC-C-CC-cEEEEEEEEec
Confidence 2223333 22 2 33 45667778764
No 52
>smart00234 START in StAR and phosphatidylcholine transfer protein. putative lipid-binding domain in StAR and phosphatidylcholine transfer protein
Probab=80.35 E-value=21 Score=26.45 Aligned_cols=133 Identities=9% Similarity=-0.020 Sum_probs=74.9
Q ss_pred ccccCHHHHH-HHHhhccccccccccCcceeEEEEecCCCCCCcEEEEEeecC-cee-----eEEee------eceEEEE
Q 037023 2 PAAVAPSRMF-EAVILDCHNLFPKLAPHAFKSIDILEGDGGDGTLKRYDFEVL-LNF-----KTGTH------DNFSIKY 68 (144)
Q Consensus 2 ~~~~~a~k~w-~~~~~d~~~llpk~~P~~i~sve~~eGdG~~Gsir~l~~~~g-~~~-----~~~ke------~~~~~~y 68 (144)
.+.+++++++ +++ .|... .++|.+. +.+++++|--..-..|..+....- +++ ..+.. ....+..
T Consensus 52 ~v~~~~~~~~~~~~-~d~~~-r~~Wd~~-~~~~~~ie~~~~~~~i~~~~~~~~~~p~~~RDfv~~r~~~~~~~~~~vi~~ 128 (206)
T smart00234 52 VVPMVCADLVEELM-DDLRY-RPEWDKN-VAKAETLEVIDNGTVIYHYVSKFVAGPVSPRDFVFVRYWRELVDGSYAVVD 128 (206)
T ss_pred EEecChHHHHHHHH-hcccc-hhhCchh-cccEEEEEEECCCCeEEEEEEecccCcCCCCeEEEEEEEEEcCCCcEEEEE
Confidence 3566788755 455 57776 7999995 777777765322234444433311 122 22222 2223333
Q ss_pred EEEecCCC---cc--ceEEEEEEEEEEEcCCCceEEEEEEEEEEcCCCCCChhhhhhHHHHHHHHHHHHHHHHhh
Q 037023 69 TIYERDGG---WG--IFEKVVYDIKFVASGDSGCIYKVAAECYLKAGEESKQEFVKDSQEKGTSLYRAVESHLLA 138 (144)
Q Consensus 69 ~vieG~~l---~~--~~~s~~~~~~v~p~~~ggs~v~w~~~ye~~~~~~~~~~~~~~~~~~~~~~~k~ie~yl~~ 138 (144)
+-++.+-. .. ....+.+-+.++|.+++.|.++|...-.+.|.- |.--.-..+......+++.+-+.|..
T Consensus 129 ~Sv~~~~~p~~~~~VR~~~~~~~~~i~p~~~~~t~vt~~~~~D~~G~i-P~~lvn~~~~~~~~~~~~~~~~~~~~ 202 (206)
T smart00234 129 VSVTHPTSPPTSGYVRAENLPSGLLIEPLGNGPSKVTWVSHADLKGWL-PHWLVRSLIKSGLAEFAKTWVATLQK 202 (206)
T ss_pred EECCCCCCCCCCCceEEEEeceEEEEEECCCCCeEEEEEEEEecCCCc-cceeehhhhhhhHHHHHHHHHHHHHH
Confidence 33333211 11 234566778889988778999999988888753 22211223456666777777776654
No 53
>PF11687 DUF3284: Domain of unknown function (DUF3284); InterPro: IPR021701 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=78.07 E-value=21 Score=25.01 Aligned_cols=95 Identities=14% Similarity=0.049 Sum_probs=48.3
Q ss_pred ccccCHHHHHHHHhhccc-cccccccCcceeEEEEecCCCCCCcEEEEEeecCceee-EEee--eceEEEEEEEecCCCc
Q 037023 2 PAAVAPSRMFEAVILDCH-NLFPKLAPHAFKSIDILEGDGGDGTLKRYDFEVLLNFK-TGTH--DNFSIKYTIYERDGGW 77 (144)
Q Consensus 2 ~~~~~a~k~w~~~~~d~~-~llpk~~P~~i~sve~~eGdG~~Gsir~l~~~~g~~~~-~~ke--~~~~~~y~vieG~~l~ 77 (144)
++++||+.||+.+. ++- .=+.+.-...+.--++ +| .--.=++..+.... .+.+ .++.|.++..-
T Consensus 6 ~l~v~a~~ff~~l~-~s~~~DI~~~tgk~~~~~~L-~G-----~~Y~K~~~~~~~~~v~It~~~~~~~Y~~~~~s----- 73 (120)
T PF11687_consen 6 TLNVSAEEFFDYLI-DSLLYDIKQATGKKLPVKQL-KG-----FSYQKKFKNKREAKVKITEYEPNKRYAATFSS----- 73 (120)
T ss_pred EecCCHHHHHHHHH-HHHHHHHHHHcCCCCChhhc-CC-----cEEEEEcCCCCEEEEEEEEEcCCCEEEEEEEe-----
Confidence 47899999999985 322 1122322222211122 33 11111222222211 2333 66666666542
Q ss_pred cceEEEEEEEEEEEcCCCceEEEEEEEEEEcC
Q 037023 78 GIFEKVVYDIKFVASGDSGCIYKVAAECYLKA 109 (144)
Q Consensus 78 ~~~~s~~~~~~v~p~~~ggs~v~w~~~ye~~~ 109 (144)
....+..+.+++|.++|.|.++-+=+++..+
T Consensus 74 -~~~~~~i~Y~i~~~~~~~~~v~y~E~~~~~~ 104 (120)
T PF11687_consen 74 -SRGTFTISYEIEPLDDGSIEVTYEEEYESKG 104 (120)
T ss_pred -cCCCEEEEEEEEECCCCcEEEEEEEEEccCC
Confidence 2334556778888888777776665555443
No 54
>cd08871 START_STARD10-like Lipid-binding START domain of mammalian STARD10 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD10 (also known as CGI-52, PTCP-like, and SDCCAG28). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD10 binds phophatidylcholine and phosphatidylethanolamine. This protein is widely expressed and is synthesized constitutively in many organs. It may function in the liver in the export of phospholipids into bile. It is concentrated in the sperm flagellum, and may play a role in energy metabolism. In the mammary gland it may participate in the enrichment of lipids in milk, and be a potential marker of differentiation. Its expression is induced in this gland during gestation and lactation. It is overe
Probab=75.99 E-value=33 Score=26.20 Aligned_cols=130 Identities=9% Similarity=0.048 Sum_probs=68.7
Q ss_pred ccCHHHHHHHHhhccccccccccCcceeEEEEecCCCCCCcEEEEEeecCce-----eeEEee----ece-EE-EEEEEe
Q 037023 4 AVAPSRMFEAVILDCHNLFPKLAPHAFKSIDILEGDGGDGTLKRYDFEVLLN-----FKTGTH----DNF-SI-KYTIYE 72 (144)
Q Consensus 4 ~~~a~k~w~~~~~d~~~llpk~~P~~i~sve~~eGdG~~Gsir~l~~~~g~~-----~~~~ke----~~~-~~-~y~vie 72 (144)
++|++.+++++. |... -++|.|. +..+++++--+.--.|..+.+..--+ +..... ++. .+ ..++ +
T Consensus 57 ~~s~e~~~~~l~-D~~~-r~~Wd~~-~~e~~~ie~~d~~~~i~y~~~~~P~pvs~RDfV~~r~~~~~~~~~vi~~~sv-~ 132 (222)
T cd08871 57 DVPAETLYDVLH-DPEY-RKTWDSN-MIESFDICQLNPNNDIGYYSAKCPKPLKNRDFVNLRSWLEFGGEYIIFNHSV-K 132 (222)
T ss_pred CCCHHHHHHHHH-Chhh-hhhhhhh-hceeEEEEEcCCCCEEEEEEeECCCCCCCCeEEEEEEEEeCCCEEEEEeccc-c
Confidence 589999999994 8765 7899996 66666655432222333333321111 212211 211 11 2222 2
Q ss_pred cC--CC-cc--ceEEEEEEEEEEEcCCCceEEEEEEEEEEcCCCCCChhhhhhHHHHHHHHHHHHHHHHhh
Q 037023 73 RD--GG-WG--IFEKVVYDIKFVASGDSGCIYKVAAECYLKAGEESKQEFVKDSQEKGTSLYRAVESHLLA 138 (144)
Q Consensus 73 G~--~l-~~--~~~s~~~~~~v~p~~~ggs~v~w~~~ye~~~~~~~~~~~~~~~~~~~~~~~k~ie~yl~~ 138 (144)
-+ +. .. ....+.+-+.++|.++++|.++|...-.+.|..+.---+ ..+....-.+++.+.+.+.+
T Consensus 133 ~~~~P~~~g~VR~~~~~~g~~i~p~~~~~t~vt~~~~~Dp~G~IP~~lvN-~~~~~~~~~~l~~l~k~~~~ 202 (222)
T cd08871 133 HKKYPPRKGFVRAISLLTGYLIRPTGPKGCTLTYVTQNDPKGSLPKWVVN-KATTKLAPKVMKKLHKAALK 202 (222)
T ss_pred CCCCCCCCCeEEeEEEccEEEEEECCCCCEEEEEEEecCCCCCcCHHHHH-HHHHHHhHHHHHHHHHHHHH
Confidence 11 11 11 123445566788887778999998888887753221112 22344455666666665554
No 55
>PF11485 DUF3211: Protein of unknown function (DUF3211); InterPro: IPR021578 This archaeal family of proteins has no known function. ; PDB: 2EJX_A.
Probab=74.56 E-value=8.4 Score=28.08 Aligned_cols=33 Identities=21% Similarity=0.354 Sum_probs=24.2
Q ss_pred cccCHHHHHHHHhhccccccccccCcceeEEEEecC
Q 037023 3 AAVAPSRMFEAVILDCHNLFPKLAPHAFKSIDILEG 38 (144)
Q Consensus 3 ~~~~a~k~w~~~~~d~~~llpk~~P~~i~sve~~eG 38 (144)
++=+.+.+-..++ |+.-+||+++| .+++++ .+|
T Consensus 9 t~H~~e~v~~ILS-DP~F~lp~l~p-~ik~v~-~~~ 41 (136)
T PF11485_consen 9 TSHDIEVVLTILS-DPEFVLPRLFP-PIKSVK-VEE 41 (136)
T ss_dssp -SS-HHHHHHHHT--HHHHHHHHST-TEEEEE--ST
T ss_pred cCCChHheEEEec-CCccEecccCC-ceEEEE-ecC
Confidence 3446678888996 99999999999 599999 444
No 56
>cd08914 START_STARD15-like Lipid-binding START domain of mammalian STARD15 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114) and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD15/ACOT12 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Rat CACH hydrolyzes acetyl-CoA to acetate and CoA. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. Human STARD15/ACOT12 may have roles in cholesterol metabolism and in beta-oxidation.
Probab=74.55 E-value=41 Score=26.67 Aligned_cols=131 Identities=10% Similarity=-0.015 Sum_probs=72.1
Q ss_pred ccccCHHHHHHHHhhccccccccccCcceeEEEEecCCCCCCcEEEEEeecCce-----eeE-Ee---e--ec--eEEEE
Q 037023 2 PAAVAPSRMFEAVILDCHNLFPKLAPHAFKSIDILEGDGGDGTLKRYDFEVLLN-----FKT-GT---H--DN--FSIKY 68 (144)
Q Consensus 2 ~~~~~a~k~w~~~~~d~~~llpk~~P~~i~sve~~eGdG~~Gsir~l~~~~g~~-----~~~-~k---e--~~--~~~~y 68 (144)
.+++|+++++.++. |... -|+|.++ ..++++++--+.---|..++-.+=.| +.. .. . ++ ..+..
T Consensus 85 ~vdvs~~~l~~LL~-D~~~-r~~Wd~~-~~e~~vI~qld~~~~vY~~~~pPw~Pvk~RD~V~~~s~~~~~~dg~~~~I~~ 161 (236)
T cd08914 85 HVKRPAHLAYRLLS-DFTK-RPLWDPH-FLSCEVIDWVSEDDQIYHITCPIVNNDKPKDLVVLVSRRKPLKDGNTYVVAV 161 (236)
T ss_pred EEcCCHHHHHHHHh-Chhh-hchhHHh-hceEEEEEEeCCCcCEEEEecCCCCCCCCceEEEEEEEEecCCCCCEEEEEE
Confidence 46899999999995 9998 8999995 88888876643222366655332111 211 11 1 11 22222
Q ss_pred EEEecCCC---c--cceEE-EEEEEEEEEcCCCceEEEEEEEEEEcCCCCCCh-hhhhhHHHHHHHHHHHHHHHHhh
Q 037023 69 TIYERDGG---W--GIFEK-VVYDIKFVASGDSGCIYKVAAECYLKAGEESKQ-EFVKDSQEKGTSLYRAVESHLLA 138 (144)
Q Consensus 69 ~vieG~~l---~--~~~~s-~~~~~~v~p~~~ggs~v~w~~~ye~~~~~~~~~-~~~~~~~~~~~~~~k~ie~yl~~ 138 (144)
.-+..+-+ . -...+ +.+- .++|.++++|.++....-+| + .-|.= .++-.--..+-..+++..+||..
T Consensus 162 ~SVp~~~~Pp~kg~VRv~~~~~G~-~I~pl~~~~~~VtY~~~~dP-g-~lp~~~~n~~~~~~~~~~~~~~~~~~~~~ 235 (236)
T cd08914 162 KSVILPSVPPSPQYIRSEIICAGF-LIHAIDSNSCTVSYFNQISA-S-ILPYFAGNLGGWSKSIEETAASCIQFLEN 235 (236)
T ss_pred eecccccCCCCCCcEEeEEEEEEE-EEEEcCCCcEEEEEEEEcCC-c-cchheEEecchhhhHHHHHHHHHHHHHhc
Confidence 22222100 1 13455 4444 88998888898887777666 2 11111 12322223444556777777753
No 57
>cd08903 START_STARD5-like Lipid-binding START domain of mammalian STARD5 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD5, and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD5 is ubiquitously expressed, with highest levels in liver and kidney. STARD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression of the gene encoding STARD5 is increased by ER stress, and its mRNA and protein levels are elevated in a type I diabetic mouse model of human diabetic nephropathy.
Probab=74.40 E-value=36 Score=25.94 Aligned_cols=132 Identities=9% Similarity=-0.035 Sum_probs=70.1
Q ss_pred ccccCHHHHHHHHhhcccc-ccccccCcceeEEEEecCCC-CCCcEEEEEee-c-C---ce--eeE---Eee-ece--EE
Q 037023 2 PAAVAPSRMFEAVILDCHN-LFPKLAPHAFKSIDILEGDG-GDGTLKRYDFE-V-L---LN--FKT---GTH-DNF--SI 66 (144)
Q Consensus 2 ~~~~~a~k~w~~~~~d~~~-llpk~~P~~i~sve~~eGdG-~~Gsir~l~~~-~-g---~~--~~~---~ke-~~~--~~ 66 (144)
.+.++++++|+.+. |..+ .-++|-+. +.+++++|--+ ...-++. ... + + .+ +.. .+. ++- ++
T Consensus 53 ~i~~s~~~~~~~l~-d~~~~~r~~W~~~-~~~~~vle~id~~~~i~~~-~~p~~~~~~vs~RDfV~~~~~~~~~d~~i~i 129 (208)
T cd08903 53 IVYATLEQVWDCLK-PAAGGLRVKWDQN-VKDFEVVEAISDDVSVCRT-VTPSAAMKIISPRDFVDVVLVKRYEDGTISS 129 (208)
T ss_pred EecCCHHHHHHHHH-hccchhhhhhhhc-cccEEEEEEecCCEEEEEE-ecchhcCCCcCCCceEEEEEEEecCCceEEE
Confidence 46899999999994 6644 12799985 88888887632 2211221 121 1 1 11 111 111 332 33
Q ss_pred EEEEEecCCC---ccceEE----EEEEEEEEEcCCCceEEEEEEEEEEcCCCCCChhhhhhHHHHHHHHHHHHHHHHh
Q 037023 67 KYTIYERDGG---WGIFEK----VVYDIKFVASGDSGCIYKVAAECYLKAGEESKQEFVKDSQEKGTSLYRAVESHLL 137 (144)
Q Consensus 67 ~y~vieG~~l---~~~~~s----~~~~~~v~p~~~ggs~v~w~~~ye~~~~~~~~~~~~~~~~~~~~~~~k~ie~yl~ 137 (144)
.++..+-+-+ ...+.- ...-++..|.++++|.++|.+..+++|.-+ ..-.-.+..+....+++.+.++|.
T Consensus 130 ~~~sv~h~~~P~~~~~VR~~~~~~g~~~~~~~~~~~~t~v~~~~~~DpkG~iP-~~lvn~~~~~~~~~~~~~Lr~~~~ 206 (208)
T cd08903 130 NATNVEHPLCPPQAGFVRGFNHPCGCFCEPVPGEPDKTQLVSFFQTDLSGYLP-QTVVDSFFPASMAEFYNNLTKAVK 206 (208)
T ss_pred eEEeccCCCCCCCCCeEEEeeeccEEEEEECCCCCCceEEEEEEEeccCCCcC-HHHHHHHhhHHHHHHHHHHHHHHh
Confidence 3333343211 112221 233455555556689999998888887532 221222233556677777777663
No 58
>cd08906 START_STARD3-like Cholesterol-binding START domain of mammalian STARD3 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD3 (also known as metastatic lymph node 64/MLN64) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD3 has a high affinity for cholesterol. It may function in trafficking endosomal cholesterol to a cytosolic acceptor or membrane. In addition to having a cytoplasmic START cholesterol-binding domain, STARD3 also contains an N-terminal MENTAL cholesterol-binding and protein-protein interaction domain. The MENTAL domain contains transmembrane helices and anchors MLN64 to endosome membranes. The gene encoding STARD3 is overexpressed in about 25% of breast cancers.
Probab=68.18 E-value=52 Score=25.18 Aligned_cols=130 Identities=11% Similarity=0.001 Sum_probs=68.8
Q ss_pred ccccCHHHHH-HHHhhccccccccccCcceeEEEEecCCCCCCcE--EEEEee-cCceee---EE--e---e--ec-eEE
Q 037023 2 PAAVAPSRMF-EAVILDCHNLFPKLAPHAFKSIDILEGDGGDGTL--KRYDFE-VLLNFK---TG--T---H--DN-FSI 66 (144)
Q Consensus 2 ~~~~~a~k~w-~~~~~d~~~llpk~~P~~i~sve~~eGdG~~Gsi--r~l~~~-~g~~~~---~~--k---e--~~-~~~ 66 (144)
.+++|++++| .++ .|... .|+|.++ +.++++++--+ ..+. +.++.. .++++. .+ . . +. ..+
T Consensus 56 ~v~~~~~~l~~~ll-~D~~~-~~~W~~~-~~~~~vi~~~~-~~~~i~Y~v~~p~~~~pv~~RDfV~~r~~~~~~~~~i~~ 131 (209)
T cd08906 56 FMQCPAELVYQEVI-LQPEK-MVLWNKT-VSACQVLQRVD-DNTLVSYDVAAGAAGGVVSPRDFVNVRRIERRRDRYVSA 131 (209)
T ss_pred EEcCCHHHHHHHHH-hChhh-ccccCcc-chhhhheeecc-CCcEEEEEEccccccCCCCCCceEEEEEEEecCCcEEEE
Confidence 4688999998 466 59888 8999995 88888876533 1221 122221 112321 11 1 1 22 123
Q ss_pred EEEEEecCCCc--cce---E-EEEEEEEEEE-cCCCceEEEEEEEEEEcCCCCCChhhhhhHHHHHHHHHHHHHHHHh
Q 037023 67 KYTIYERDGGW--GIF---E-KVVYDIKFVA-SGDSGCIYKVAAECYLKAGEESKQEFVKDSQEKGTSLYRAVESHLL 137 (144)
Q Consensus 67 ~y~vieG~~l~--~~~---~-s~~~~~~v~p-~~~ggs~v~w~~~ye~~~~~~~~~~~~~~~~~~~~~~~k~ie~yl~ 137 (144)
..++. -+.++ ..| . ..+.-+-..+ .++++|.++|.+.-+++|.- |.----....+....+++.+.++|.
T Consensus 132 ~~sv~-~~~~P~~~~~VR~~~~~~G~~i~~~~~~~~~t~vt~~~~~Dp~G~l-P~~lvN~~~~~~~~~~~~~LR~~~~ 207 (209)
T cd08906 132 GISTT-HSHKPPLSKYVRGENGPGGFVVLKSASNPSVCTFIWILNTDLKGRL-PRYLIHQSLAATMFEFASHLRQRIR 207 (209)
T ss_pred EEEEe-cCCCCCCCCeEEEeeeccEEEEEECCCCCCceEEEEEEecCCCCCC-CHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33332 11111 111 2 1222223332 45568999999999999853 2222222344566677777777664
No 59
>cd08911 START_STARD7-like Lipid-binding START domain of mammalian STARD7 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD7 (also known as gestational trophoblastic tumor 1/GTT1). It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be involved in the intracellular trafficking of phosphatidycholine (PtdCho) to mitochondria. STARD7 was shown to be surface active and to interact differentially with phospholipid monolayers, it showed a preference for phosphatidylserine, cholesterol, and phosphatidylglycerol.
Probab=67.03 E-value=54 Score=24.92 Aligned_cols=128 Identities=9% Similarity=0.058 Sum_probs=68.1
Q ss_pred ccCHHHHHHHHhhccccccccccCcceeEEEEecCCCCCCcEEEEEeecCce-------eeEEee-----ece--EEEEE
Q 037023 4 AVAPSRMFEAVILDCHNLFPKLAPHAFKSIDILEGDGGDGTLKRYDFEVLLN-------FKTGTH-----DNF--SIKYT 69 (144)
Q Consensus 4 ~~~a~k~w~~~~~d~~~llpk~~P~~i~sve~~eGdG~~Gsir~l~~~~g~~-------~~~~ke-----~~~--~~~y~ 69 (144)
.+|++.|++++. |... -++|.+. +.+.++++-+...++ ..+.+.-.-| +.+... ++. .+...
T Consensus 55 d~s~~~~~~~~~-D~~~-r~~Wd~~-~~~~~~le~~~~~~~-~i~y~~~~~P~P~s~RD~V~~r~~~~~~~~~~~~i~~~ 130 (207)
T cd08911 55 DVTARDFLNVQL-DLEY-RKKWDAT-AVELEVVDEDPETGS-EIIYWEMQWPKPFANRDYVYVRRYIIDEENKLIVIVSK 130 (207)
T ss_pred CCCHHHHHHHHh-CHHH-HHHHHhh-heeEEEEEccCCCCC-EEEEEEEECCCCCCCccEEEEEEEEEcCCCCEEEEEEe
Confidence 799999999995 8876 8999985 778888886543343 2222221111 111111 222 22222
Q ss_pred EEecC--CCc---cceEEEEEEEEEEEcC---CCceEEEEEEEEEEcCCCCCChh-hhhhHHHHHHHHHHHHHHHHh
Q 037023 70 IYERD--GGW---GIFEKVVYDIKFVASG---DSGCIYKVAAECYLKAGEESKQE-FVKDSQEKGTSLYRAVESHLL 137 (144)
Q Consensus 70 vieG~--~l~---~~~~s~~~~~~v~p~~---~ggs~v~w~~~ye~~~~~~~~~~-~~~~~~~~~~~~~k~ie~yl~ 137 (144)
-++-+ +.. -...+|.+.+.++|.+ ++||.+.+ .|+-..+...|.- --..+...+-.+++.+..-++
T Consensus 131 sv~hp~~P~~~g~VRv~~~~~~~~i~p~~~~~~~~~~~~~--~~~~dPgG~IP~~lvN~~~~~~~~~~l~~l~~a~~ 205 (207)
T cd08911 131 AVQHPSYPESPKKVRVEDYWSYMVIRPHKSFDEPGFEFVL--TYFDNPGVNIPSYITSWVAMSGMPDFLERLRNAAL 205 (207)
T ss_pred cCCCCCCCCCCCCEEEEEeEEEEEEEeCCCCCCCCeEEEE--EEEeCCCCccCHHHHHHHHHhhccHHHHHHHHHHh
Confidence 23321 110 2477788888999873 45666554 4443222222222 112355566667777665443
No 60
>cd08870 START_STARD2_7-like Lipid-binding START domain of mammalian STARD2, -7, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP), and STARD7 (also known as gestational trophoblastic tumor 1/GTT1). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may also have a mitochondrial function. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be invo
Probab=66.05 E-value=56 Score=24.76 Aligned_cols=129 Identities=11% Similarity=0.008 Sum_probs=71.3
Q ss_pred ccCHHHHHHHHhhccccccccccCcceeEEEEecCCCCCCcEEEEEeecCce--e---eEE--e---e---eceEEEEEE
Q 037023 4 AVAPSRMFEAVILDCHNLFPKLAPHAFKSIDILEGDGGDGTLKRYDFEVLLN--F---KTG--T---H---DNFSIKYTI 70 (144)
Q Consensus 4 ~~~a~k~w~~~~~d~~~llpk~~P~~i~sve~~eGdG~~Gsir~l~~~~g~~--~---~~~--k---e---~~~~~~y~v 70 (144)
++|++.|++++. |... -++|.+. +...++++-++..|+ +.+.+.-..| + .++ . + ....+....
T Consensus 60 ~~s~~~~~~~l~-D~~~-r~~Wd~~-~~~~~~le~~~~~~~-~i~y~~~~~P~P~s~RD~V~~r~~~~~~~~~~~i~~~s 135 (209)
T cd08870 60 DCTPELLRDFYW-DDEY-RKKWDET-VIEHETLEEDEKSGT-EIVRWVKKFPFPLSDREYVIARRLWESDDRSYVCVTKG 135 (209)
T ss_pred CCCHHHHHHHHc-Chhh-Hhhhhhh-eeeEEEEEecCCCCc-EEEEEEEECCCcCCCceEEEEEEEEEcCCCEEEEEEeC
Confidence 579999999994 8776 8999985 777777766543233 2222222222 1 111 1 1 112222222
Q ss_pred EecCCCc----cceEEEEEEEEEEEc--CCCceEEEEEEEEEEcCCCCCChhhhhhHHHHHHHHHHHHHHHHh
Q 037023 71 YERDGGW----GIFEKVVYDIKFVAS--GDSGCIYKVAAECYLKAGEESKQEFVKDSQEKGTSLYRAVESHLL 137 (144)
Q Consensus 71 ieG~~l~----~~~~s~~~~~~v~p~--~~ggs~v~w~~~ye~~~~~~~~~~~~~~~~~~~~~~~k~ie~yl~ 137 (144)
+.-+..+ -.+..|.+.+.++|. ++++|-+..+.--.+.+. .|.--.-.++...+-.+++.+..-+.
T Consensus 136 v~~~~~P~~~~vRv~~~~~~~~i~p~~~~~~~t~~~~~~~~dp~G~-IP~wlvN~~~~~~~~~~l~~l~~a~~ 207 (209)
T cd08870 136 VPYPSVPRSGRKRVDDYESSLVIRAVKGDGQGSACEVTYFHNPDGG-IPRELAKLAVKRGMPGFLKKLENALR 207 (209)
T ss_pred CcCCCCCCCCcEEEEEEEeEEEEEEecCCCCceEEEEEEEECCCCC-CCHHHHHHHHHhhhHHHHHHHHHHHh
Confidence 2221111 247788888999997 556676666655555443 22222222345556677777776553
No 61
>cd08877 START_2 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=63.30 E-value=63 Score=24.45 Aligned_cols=130 Identities=11% Similarity=0.044 Sum_probs=70.3
Q ss_pred ccccCHHHHHHHHhhccccccccccCcceeEEEEecCCCCCCcEEEEEeecCcee-----eEE------ee--eceEE--
Q 037023 2 PAAVAPSRMFEAVILDCHNLFPKLAPHAFKSIDILEGDGGDGTLKRYDFEVLLNF-----KTG------TH--DNFSI-- 66 (144)
Q Consensus 2 ~~~~~a~k~w~~~~~d~~~llpk~~P~~i~sve~~eGdG~~Gsir~l~~~~g~~~-----~~~------ke--~~~~~-- 66 (144)
.+++|++.+.+++. |.+ +.|+|.|. ....+.++..+..-.|- .+.-..|. ..+ .. ++..+
T Consensus 53 ~i~~~~~~~~~vl~-d~~-~~~~W~p~-~~~~~~l~~~~~~~~v~--y~~~~~PwPv~~RD~v~~~~~~~~~~~~~~i~i 127 (215)
T cd08877 53 EIDGPLFNLLALLN-EVE-LYKTWVPF-CIRSKKVKQLGRADKVC--YLRVDLPWPLSNREAVFRGFGVDRLEENGQIVI 127 (215)
T ss_pred EecCChhHeEEEEe-hhh-hHhhhccc-ceeeEEEeecCCceEEE--EEEEeCceEecceEEEEEEEEEeeeccCCCEEE
Confidence 46789999998884 775 58999997 55555554433212222 22222221 011 00 22211
Q ss_pred EEEEEecC---------CCc------cceEEEEEEEEEEEcCCCceEEEEEEEEEEcCCCCCChhhhhhHHHHHHHHHHH
Q 037023 67 KYTIYERD---------GGW------GIFEKVVYDIKFVASGDSGCIYKVAAECYLKAGEESKQEFVKDSQEKGTSLYRA 131 (144)
Q Consensus 67 ~y~vieG~---------~l~------~~~~s~~~~~~v~p~~~ggs~v~w~~~ye~~~~~~~~~~~~~~~~~~~~~~~k~ 131 (144)
.-+-+..+ .++ -....+.+-+.++|-+++.|.++..+...+++.-.|.----..+++.+-.+++.
T Consensus 128 ~~~si~~~~~~~~~~~~~iP~~~~~~vR~~~~~~~~~i~p~~~~~t~v~~~~~~DP~g~~IP~~liN~~~k~~~~~~~~~ 207 (215)
T cd08877 128 LLKSIDDDPEFLKLTDLDIPSTSAKGVRRIIKYYGFVITPISPTKCYLRFVANVDPKMSLVPKSLLNFVARKFAGLLFEK 207 (215)
T ss_pred EEecCCCCcccccccCCcCCCCCCCceEEEEecceEEEEEcCCCCeEEEEEEEcCCCcccCCHHHHHHHHHHHHHHHHHH
Confidence 12222210 011 123566677788998888899998888777776344332222355666677777
Q ss_pred HHHHH
Q 037023 132 VESHL 136 (144)
Q Consensus 132 ie~yl 136 (144)
+.+-+
T Consensus 208 l~k~~ 212 (215)
T cd08877 208 IQKAA 212 (215)
T ss_pred HHHHH
Confidence 66543
No 62
>PF01852 START: START domain; InterPro: IPR002913 START (StAR-related lipid-transfer) is a lipid-binding domain in StAR, HD-ZIP and signalling proteins []. StAR (Steroidogenic Acute Regulatory protein) is a mitochondrial protein that is synthesised in response to luteinising hormone stimulation []. Expression of the protein in the absence of hormone stimulation is sufficient to induce steroid production, suggesting that this protein is required in the acute regulation of steroidogenesis. Representatives of the START domain family have been shown to bind different ligands such as sterols (StAR protein) and phosphatidylcholine (PC-TP). Ligand binding by the START domain can also regulate the activities of other domains that co-occur with the START domain in multidomain proteins such as Rho-gap, the homeodomain, and the thioesterase domain [, ]. The crystal structure of START domain of human MLN64 shows an alpha/beta fold built around an U-shaped incomplete beta-barrel. Most importantly, the interior of the protein encompasses a 26 x 12 x 11 Angstroms hydrophobic tunnel that is apparently large enough to bind a single cholesterol molecule []. The START domain structure revealed an unexpected similarity to that of the birch pollen allergen Bet v 1 and to bacterial polyketide cyclases/aromatases [, ]. ; PDB: 1JSS_B 2R55_B 1LN3_B 1LN1_A 1LN2_B 3FO5_A 2Z9Y_A 2E3R_A 3H3Q_B 2E3P_B ....
Probab=59.12 E-value=69 Score=23.54 Aligned_cols=132 Identities=11% Similarity=0.065 Sum_probs=78.3
Q ss_pred ccccCHHHHHHHHhhccccccccccCcceeEEEEecCCCCCCcEEEEEeecCc--eee-----EEee------eceEEEE
Q 037023 2 PAAVAPSRMFEAVILDCHNLFPKLAPHAFKSIDILEGDGGDGTLKRYDFEVLL--NFK-----TGTH------DNFSIKY 68 (144)
Q Consensus 2 ~~~~~a~k~w~~~~~d~~~llpk~~P~~i~sve~~eGdG~~Gsir~l~~~~g~--~~~-----~~ke------~~~~~~y 68 (144)
.+.+++++++..+. +... +|-+. +.+++++|--..-..|..+.+..-. ++. .+.. ....+..
T Consensus 53 ~v~~~~~~~~~~~~-~~~~---~Wd~~-~~~~~~le~~~~~~~i~~~~~~~~~~~p~~~RDfv~~~~~~~~~~~~~~i~~ 127 (206)
T PF01852_consen 53 VVPASPEQVVEDLL-DDRE---QWDKM-CVEAEVLEQIDEDTDIVYFVMKSPWPGPVSPRDFVFLRSWRKDEDGTYVIVS 127 (206)
T ss_dssp EESSCHHHHHHHHH-CGGG---HHSTT-EEEEEEEEEEETTEEEEEEEEE-CTTTTSSEEEEEEEEEEEECTTSEEEEEE
T ss_pred EEcCChHHHHHHHH-hhHh---hcccc-hhhheeeeecCCCCeEEEEEecccCCCCCCCcEEEEEEEEEEeccceEEEEE
Confidence 36778888888885 4332 88884 7788888762222455554444322 321 1121 2234444
Q ss_pred EEEecCCCc----c--ceEEEEEEEEEEEcCCCceEEEEEEEEEEcCCCCCChhhhh-hHHHHHHHHHHHHHHHHhhCC
Q 037023 69 TIYERDGGW----G--IFEKVVYDIKFVASGDSGCIYKVAAECYLKAGEESKQEFVK-DSQEKGTSLYRAVESHLLANP 140 (144)
Q Consensus 69 ~vieG~~l~----~--~~~s~~~~~~v~p~~~ggs~v~w~~~ye~~~~~~~~~~~~~-~~~~~~~~~~k~ie~yl~~~p 140 (144)
+=++.+..+ . ....+.+-+.++|.+++.|.+++...-.+.+..+ .--.. .+...+..+++.+-+.|..++
T Consensus 128 ~Si~~~~~~~~~~~~VR~~~~~s~~~i~~~~~~~~~vt~~~~~D~~G~iP--~~~~n~~~~~~~~~~~~~~~~~~~~~~ 204 (206)
T PF01852_consen 128 RSIDHPQYPPNSKGYVRAEILISGWVIRPLGDGRTRVTYVSQVDPKGWIP--SWLVNMVVKSQPPNFLKNLRKALKKQK 204 (206)
T ss_dssp EEEEBTTSSTT-TTSEEEEEESEEEEEEEETTCEEEEEEEEEEESSSSSH--HHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred eeeccccccccccCcceeeeeeEeEEEEEccCCCceEEEEEEECCCCCCh--HHHHHHHHHHhHHHHHHHHHHHHHHhc
Confidence 444433221 1 2346667788999988888888888877777432 22222 234566777888888887765
No 63
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=54.45 E-value=42 Score=30.72 Aligned_cols=46 Identities=15% Similarity=0.370 Sum_probs=29.6
Q ss_pred cCcceeEEEEecCC-----CCCCcEEEEEeecCcee-eEEeeeceEEEEEEEe
Q 037023 26 APHAFKSIDILEGD-----GGDGTLKRYDFEVLLNF-KTGTHDNFSIKYTIYE 72 (144)
Q Consensus 26 ~P~~i~sve~~eGd-----G~~Gsir~l~~~~g~~~-~~~ke~~~~~~y~vie 72 (144)
|-..|.++-++.+. +.-|+||+|+.. |.-+ ++.-|.++.|++++.-
T Consensus 178 HtD~VRgL~vl~~~~flScsNDg~Ir~w~~~-ge~l~~~~ghtn~vYsis~~~ 229 (745)
T KOG0301|consen 178 HTDCVRGLAVLDDSHFLSCSNDGSIRLWDLD-GEVLLEMHGHTNFVYSISMAL 229 (745)
T ss_pred chhheeeeEEecCCCeEeecCCceEEEEecc-CceeeeeeccceEEEEEEecC
Confidence 44467777777663 357999999993 3222 2222388888888543
No 64
>PRK06628 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=50.14 E-value=33 Score=27.41 Aligned_cols=44 Identities=9% Similarity=-0.002 Sum_probs=27.3
Q ss_pred EEEEEEEEcCCCCCChhhhhhHHHHHHHHHHHHHHHHhhCCCCC
Q 037023 100 KVAAECYLKAGEESKQEFVKDSQEKGTSLYRAVESHLLANPHLY 143 (144)
Q Consensus 100 ~w~~~ye~~~~~~~~~~~~~~~~~~~~~~~k~ie~yl~~~p~~~ 143 (144)
.+.+.+++..+.....+...+..+.+..+.+.+|+.+.++|+-|
T Consensus 238 ~~~i~~~~~~~~~~~~~~~~~~~~~t~~~n~~lE~~Ir~~PeQw 281 (290)
T PRK06628 238 YFKVIVHPQLKFEQTGDNKADCYNIMLNINQMLGEWVKQNPAQW 281 (290)
T ss_pred eEEEEEcCCCCCCCCCChhhhHHHHHHHHHHHHHHHHHcCchhh
Confidence 45666665432221222222234567788999999999999865
No 65
>PF14275 DUF4362: Domain of unknown function (DUF4362)
Probab=49.07 E-value=47 Score=22.79 Aligned_cols=31 Identities=19% Similarity=0.116 Sum_probs=21.6
Q ss_pred CCCCcEEEEEee-cCceee-EEeeeceEEEEEE
Q 037023 40 GGDGTLKRYDFE-VLLNFK-TGTHDNFSIKYTI 70 (144)
Q Consensus 40 G~~Gsir~l~~~-~g~~~~-~~ke~~~~~~y~v 70 (144)
|.+++||.++|+ +|.|+- .+......+.|+.
T Consensus 28 ~k~d~IrIv~yT~EGdPI~~~L~~~G~~I~y~~ 60 (98)
T PF14275_consen 28 GKPDKIRIVQYTIEGDPIFQDLEYDGNQIKYTS 60 (98)
T ss_pred CCCCEEEEEEecCCCCCEEEEEEECCCEEEEEE
Confidence 467899999999 666753 4444666676665
No 66
>KOG0896 consensus Ubiquitin-conjugating enzyme E2 [Posttranslational modification, protein turnover, chaperones]
Probab=47.93 E-value=54 Score=23.89 Aligned_cols=13 Identities=15% Similarity=-0.059 Sum_probs=11.1
Q ss_pred eceEEEEEEEecC
Q 037023 62 DNFSIKYTIYERD 74 (144)
Q Consensus 62 ~~~~~~y~vieG~ 74 (144)
||+.++.+|-=|.
T Consensus 54 EnRiysLKI~Cgp 66 (138)
T KOG0896|consen 54 ENRIYSLKIECGP 66 (138)
T ss_pred ccceeeEEEecCC
Confidence 9999999997663
No 67
>PRK06553 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=46.48 E-value=70 Score=25.77 Aligned_cols=44 Identities=16% Similarity=0.083 Sum_probs=27.1
Q ss_pred EEEEEEEEcCCCCCChhhhhhHHHHHHHHHHHHHHHHhhCCCCC
Q 037023 100 KVAAECYLKAGEESKQEFVKDSQEKGTSLYRAVESHLLANPHLY 143 (144)
Q Consensus 100 ~w~~~ye~~~~~~~~~~~~~~~~~~~~~~~k~ie~yl~~~p~~~ 143 (144)
++.+.+++.-+.+..++...+..+.+..+.+.+|+.+.++|+-|
T Consensus 257 ~y~i~~~~~~~~~~~~~~~~d~~~~t~~~n~~lE~~Ir~~PeQw 300 (308)
T PRK06553 257 RFRLELTERVELPRDADGQIDVQATMQALTDVVEGWVREYPGQW 300 (308)
T ss_pred eEEEEEecCCCCCCCCCccccHHHHHHHHHHHHHHHHHcChHhh
Confidence 46777765432211111111233667788999999999999865
No 68
>KOG3177 consensus Oligoketide cyclase/lipid transport protein [Lipid transport and metabolism]
Probab=42.43 E-value=1.4e+02 Score=23.53 Aligned_cols=99 Identities=13% Similarity=0.181 Sum_probs=56.9
Q ss_pred cccCHHHHHHHHhhccccccccccCcceeEEEEecCCCCCCcEEEEEee--cCceeeEEee---eceEEEEE-EEecCCC
Q 037023 3 AAVAPSRMFEAVILDCHNLFPKLAPHAFKSIDILEGDGGDGTLKRYDFE--VLLNFKTGTH---DNFSIKYT-IYERDGG 76 (144)
Q Consensus 3 ~~~~a~k~w~~~~~d~~~llpk~~P~~i~sve~~eGdG~~Gsir~l~~~--~g~~~~~~ke---~~~~~~y~-vieG~~l 76 (144)
++.+++.+|++++ +-.. .-...| .-++.++++-+-+-+.+-.|+.+ +=.+ .+... ..=...++ .-+|..
T Consensus 76 igysp~~my~vVS-~V~~-Y~~FVP-wC~kS~V~~~~P~~~~kA~LeVGFk~l~E-~y~S~Vt~~~p~l~kt~~~d~rL- 150 (227)
T KOG3177|consen 76 IGYSPSEMYSVVS-NVSE-YHEFVP-WCKKSDVTSRRPSGPLKADLEVGFKPLDE-RYTSNVTCVKPHLTKTVCADGRL- 150 (227)
T ss_pred hCCCHHHHHHHHH-hHHH-hhcccc-ceeccceeecCCCCCceeeEEecCcccch-hheeeeEEecccceEEeeccccH-
Confidence 5789999999997 6665 567778 47777766655111222223322 1111 11111 22222333 335543
Q ss_pred ccceEEEEEEEEEEEcC--CCceEEEEEEEEEEcC
Q 037023 77 WGIFEKVVYDIKFVASG--DSGCIYKVAAECYLKA 109 (144)
Q Consensus 77 ~~~~~s~~~~~~v~p~~--~ggs~v~w~~~ye~~~ 109 (144)
+.......+|.|.. .+.|.+...+.||-..
T Consensus 151 ---F~~L~t~Wsf~pg~~~p~tc~ldf~v~FeF~S 182 (227)
T KOG3177|consen 151 ---FNHLITIWSFKPGPNIPRTCTLDFSVSFEFKS 182 (227)
T ss_pred ---HHhhhheeeeccCCCCCCeEEEEEEEEEEehh
Confidence 33334567889988 4789999999998654
No 69
>PF03000 NPH3: NPH3 family; InterPro: IPR004249 The RPT2 protein is a signal transducer of the phototropic response in Arabidopsis thaliana. The RPT2 gene is light inducible; encodes a novel protein with putative phosphorylation sites, a nuclear localization signal, a BTB/POZ domain (IPR000210 from INTERPRO), and a coiled-coil domain. RPT2 belongs to a large gene family that includes the recently isolated NPH3 gene []. The NPH3 protein is a NPH1 photoreceptor-interacting protein that is essential for phototropism. Phototropism of A. thaliana seedlings in response to a blue light source is initiated by nonphototropic hypocotyl 1 (NPH1), a light-activated serine-threonine protein kinase []. NPH3 is a member of a large protein family, apparently specific to higher plants, and may function as an adapter or scaffold protein to bring together the enzymatic components of a NPH1-activated phosphorelay []. Many of the proteins in this group also contain the BTB/POZ domain (IPR000210 from INTERPRO) at the N-terminal.; GO: 0004871 signal transducer activity, 0009416 response to light stimulus
Probab=40.62 E-value=20 Score=28.73 Aligned_cols=16 Identities=50% Similarity=0.766 Sum_probs=13.4
Q ss_pred HHHHHHHHHHhhCCCC
Q 037023 127 SLYRAVESHLLANPHL 142 (144)
Q Consensus 127 ~~~k~ie~yl~~~p~~ 142 (144)
+++++|+.||.+||..
T Consensus 221 ~LYrAID~YLk~Hp~l 236 (258)
T PF03000_consen 221 GLYRAIDIYLKAHPGL 236 (258)
T ss_pred hHHHHHHHHHHHcccC
Confidence 6789999999999864
No 70
>cd08872 START_STARD11-like Ceramide-binding START domain of mammalian STARD11 and related domains. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD11 and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD11 can mediate transfer of the natural ceramide isomers, dihydroceramide and phytoceramide, as well as ceramides having C14, C16, C18, and C20 chains. They can also transfer diacylglycerol, but with a lower efficiency. STARD11 is synthesized from two major transcripts: a larger one encoding Goodpasture antigen-binding protein (GPBP)/ceramide transporter long form (CERTL); and a smaller one encoding GPBPdelta26/CERT, which is deleted for 26 amino acids. Both splicing variants mediate ceramide transfer from the ER to the Golg
Probab=39.52 E-value=1.8e+02 Score=22.67 Aligned_cols=128 Identities=5% Similarity=-0.067 Sum_probs=69.7
Q ss_pred cCHHHHHHHHhhccccccccccCcceeEEEEecCCCCCCcEEEEEeecCce-------eeEEe---e--ec---------
Q 037023 5 VAPSRMFEAVILDCHNLFPKLAPHAFKSIDILEGDGGDGTLKRYDFEVLLN-------FKTGT---H--DN--------- 63 (144)
Q Consensus 5 ~~a~k~w~~~~~d~~~llpk~~P~~i~sve~~eGdG~~Gsir~l~~~~g~~-------~~~~k---e--~~--------- 63 (144)
++++.+.+.+. |... -++|... +.+.+++|--+ .++ +.+.+.-..+ +.... . ++
T Consensus 63 vt~~~~~~~l~-D~~~-r~~Wd~~-~~~~~vie~l~-~~~-~I~Y~~~k~PwPvs~RD~V~~~~~~~~~d~~~~~~~~~~ 137 (235)
T cd08872 63 VTGHEVCHYFF-DPDV-RMDWETT-LENFHVVETLS-QDT-LIFHQTHKRVWPAAQRDALFVSHIRKIPALEEPNAHDTW 137 (235)
T ss_pred CCHHHHHHHHh-Chhh-HHHHHhh-hheeEEEEecC-CCC-EEEEEEccCCCCCCCcEEEEEEEEEecCccccccCCCeE
Confidence 89999999995 8877 7899984 88888775532 122 2222221111 11111 1 11
Q ss_pred eEEEEEEEecC-CCccceEEEEEE---------------EEEEEcCCCceEEEEEEEEEEcCCCCCChhhhhhHHHHHHH
Q 037023 64 FSIKYTIYERD-GGWGIFEKVVYD---------------IKFVASGDSGCIYKVAAECYLKAGEESKQEFVKDSQEKGTS 127 (144)
Q Consensus 64 ~~~~y~vieG~-~l~~~~~s~~~~---------------~~v~p~~~ggs~v~w~~~ye~~~~~~~~~~~~~~~~~~~~~ 127 (144)
..+..++.--. |....|-....+ ..++| ++++|.+++...-.|.|..+..--+ ..++..+-.
T Consensus 138 vii~~Sv~h~~~P~~~g~VRv~~~~~~~~~~~i~~~~g~~~~t~-~~~~~~ity~~~~dPgG~iP~wvvn-~~~k~~~P~ 215 (235)
T cd08872 138 IVCNFSVDHDSAPLNNKCVRAKLTVAMICQTFVSPPDGNQEITR-DNILCKITYVANVNPGGWAPASVLR-AVYKREYPK 215 (235)
T ss_pred EEEEecccCccCCCCCCeEEEEEEeeeeeeeeeecCCCcccccC-CCCeEEEEEEEEeCCCCCccHHHHH-HHHHhhchH
Confidence 22444432221 111122111111 12334 3567888888777777754322222 246677789
Q ss_pred HHHHHHHHHhhC
Q 037023 128 LYRAVESHLLAN 139 (144)
Q Consensus 128 ~~k~ie~yl~~~ 139 (144)
++|.+.+|++.+
T Consensus 216 ~l~~~~~~~~~~ 227 (235)
T cd08872 216 FLKRFTSYVQEK 227 (235)
T ss_pred HHHHHHHHHHHh
Confidence 999999999864
No 71
>TIGR02208 lipid_A_msbB lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase. This family consists of MsbB in E. coli and closely related proteins in other species. MsbB is homologous to HtrB (TIGR02207) and acts immediately after it in the biosynthesis of KDO-2 lipid A (also called Re LPS and Re endotoxin). These two enzymes act after creation of KDO-2 lipid IV-A by addition of the KDO sugars.
Probab=39.00 E-value=56 Score=26.25 Aligned_cols=40 Identities=18% Similarity=0.229 Sum_probs=27.0
Q ss_pred EEEEEEEEcCCCCCChhhhhhHHHHHHHHHHHHHHHHhhCCCCC
Q 037023 100 KVAAECYLKAGEESKQEFVKDSQEKGTSLYRAVESHLLANPHLY 143 (144)
Q Consensus 100 ~w~~~ye~~~~~~~~~~~~~~~~~~~~~~~k~ie~yl~~~p~~~ 143 (144)
++.+++++..+.+ .+++.. +.+..+.+.+|+++.++|+-|
T Consensus 248 ~~~i~~~~~~~~~-~~~~~~---~~t~~~n~~lE~~Ir~~PeQw 287 (305)
T TIGR02208 248 KFELTVRPAMATE-LSVDPE---QEARAMNKEVEQFILPYPEQY 287 (305)
T ss_pred eEEEEEecCCCCC-CCCCHH---HHHHHHHHHHHHHHHcCchHH
Confidence 4677776543322 223333 677788999999999999865
No 72
>PF10698 DUF2505: Protein of unknown function (DUF2505); InterPro: IPR019639 This entry represents proteins found Actinobacteria and Proteobacteria. The function is not known.
Probab=36.03 E-value=1.7e+02 Score=21.17 Aligned_cols=27 Identities=19% Similarity=0.292 Sum_probs=21.1
Q ss_pred EEEEEEEEEEEcCCCceEEEEEEEEEEc
Q 037023 81 EKVVYDIKFVASGDSGCIYKVAAECYLK 108 (144)
Q Consensus 81 ~s~~~~~~v~p~~~ggs~v~w~~~ye~~ 108 (144)
-++++++.+.|.+ ++|...++++..-.
T Consensus 102 ~~~~G~~~L~~~~-~gt~~~~~g~v~v~ 128 (159)
T PF10698_consen 102 VSISGTMRLRPDG-GGTRLTVEGEVKVK 128 (159)
T ss_pred EEEEEEEEEecCC-CCEEEEEEEEEEEE
Confidence 3678999999944 57888888888754
No 73
>PF11979 DUF3480: Domain of unknown function (DUF3480); InterPro: IPR022557 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 350 to 362 amino acids in length. This domain is found C-terminal to PF01363 from PFAM.
Probab=35.26 E-value=2e+02 Score=24.29 Aligned_cols=65 Identities=11% Similarity=0.069 Sum_probs=39.3
Q ss_pred EecCCCccceEEEEEEEEEEEcCCCceEEEEEEEEEEcCCCC---C--ChhhhhhHHHHHHHHHHHHHHHHh
Q 037023 71 YERDGGWGIFEKVVYDIKFVASGDSGCIYKVAAECYLKAGEE---S--KQEFVKDSQEKGTSLYRAVESHLL 137 (144)
Q Consensus 71 ieG~~l~~~~~s~~~~~~v~p~~~ggs~v~w~~~ye~~~~~~---~--~~~~~~~~~~~~~~~~k~ie~yl~ 137 (144)
|+|-.| +.+.+++..-...-+++ +-+++||=-|+...+.. + +.+...-+.+.+.++..++..||.
T Consensus 239 IDg~sl-egv~s~ri~~~~~~~~~-~~~IRwTeVF~l~~~~~~~~~~~~~~~~~laE~IA~a~c~AL~PhL~ 308 (356)
T PF11979_consen 239 IDGKSL-EGVPSVRIFQGSEYKAN-GKIIRWTEVFFLQKDDDSNGPSDPSDHSRLAEQIAKACCAALCPHLK 308 (356)
T ss_pred CCCcee-cCceeeeecccceeecC-CeEEEEEEEEEEecCccccCCCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555 35666666433333443 46889999999865433 2 223344455666777888888774
No 74
>PF02021 UPF0102: Uncharacterised protein family UPF0102; InterPro: IPR003509 The proteins in this entry are functionally uncharacterised.; PDB: 3FOV_A.
Probab=32.99 E-value=1.5e+02 Score=19.69 Aligned_cols=65 Identities=25% Similarity=0.239 Sum_probs=33.1
Q ss_pred EEEEecCCCccceEEEEEEEEEEEcCCCceEEEEEEEEEEcCCCCCChhhhhhHHHHHHHHHHHHHHHHhhCC
Q 037023 68 YTIYERDGGWGIFEKVVYDIKFVASGDSGCIYKVAAECYLKAGEESKQEFVKDSQEKGTSLYRAVESHLLANP 140 (144)
Q Consensus 68 y~vieG~~l~~~~~s~~~~~~v~p~~~ggs~v~w~~~ye~~~~~~~~~~~~~~~~~~~~~~~k~ie~yl~~~p 140 (144)
|++|+ .+|.+-..+|-++..+ ++++|=.-+++-......++.+.+. ......+.++...||..||
T Consensus 15 ~~IL~-----rN~r~~~GEIDiIa~~-~~~lvfVEVK~R~~~~~~~~~~~v~--~~K~~ri~~~A~~yL~~~~ 79 (93)
T PF02021_consen 15 YRILE-----RNWRCRRGEIDIIARD-GDTLVFVEVKTRSSSSFGSPEEAVD--PRKQRRIRRAAEYYLAENP 79 (93)
T ss_dssp -EEEE-----EEEEETTEEEEEEEEE-TTEEEEEEEEE----------------HHHHHHHHHHHHHHHHH-G
T ss_pred CEEee-----eeecCCCCcEeEEEEE-cccEEEEEEEEeecccccCHHHHCh--HHHHHHHHHHHHHHHHHCC
Confidence 55655 3455555788888876 4455554555444332222233232 2455678889999999998
No 75
>PRK05645 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=32.85 E-value=81 Score=25.14 Aligned_cols=40 Identities=15% Similarity=0.087 Sum_probs=26.8
Q ss_pred EEEEEEEEcCCCCCChhhhhhHHHHHHHHHHHHHHHHhhCCCCC
Q 037023 100 KVAAECYLKAGEESKQEFVKDSQEKGTSLYRAVESHLLANPHLY 143 (144)
Q Consensus 100 ~w~~~ye~~~~~~~~~~~~~~~~~~~~~~~k~ie~yl~~~p~~~ 143 (144)
.+++.+++..... +++++. +.+..+.+.+|+++.++|+-|
T Consensus 238 ~y~i~~~~~~~~~-~~~~~~---~~t~~~~~~lE~~Ir~~PeQw 277 (295)
T PRK05645 238 GYKVILEAAPEDM-YSTDVE---VSAAAMSKVVERYVRAYPSQY 277 (295)
T ss_pred eEEEEEecCCcCC-CCCCHH---HHHHHHHHHHHHHHHcCcHHh
Confidence 5677776543221 122333 667788999999999999865
No 76
>PF11647 PMT_C: C-terminal region of Pasteurella multocida toxin residues 569-1285; InterPro: IPR020972 This entry represents the C-terminal domain of Pasteurella multocida toxin (PMT) which displays a Trojan horse-like shape with three domains, C1, C2 and C3. The C3 domain possesses the Cys-His-Asp catalytic triad. PMT is an enzyme toxin carrying the cysteine protease-like catalytic triad which functions on the cytoplasmic face of the plasma membrane of target cells []. This entry is also found in the Vibrio cholerae RTX toxin [], a bacterial toxin that self-process by a cysteine peptidase mechanism. These cysteine peptidases belong to MEROPS peptidase family C80 (RTX self-cleaving toxin, clan CD). ; PDB: 4ERR_A 2EC5_B 2EBH_X 2EBF_X.
Probab=31.15 E-value=76 Score=20.14 Aligned_cols=20 Identities=30% Similarity=0.358 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHhhCCCC
Q 037023 123 EKGTSLYRAVESHLLANPHL 142 (144)
Q Consensus 123 ~~~~~~~k~ie~yl~~~p~~ 142 (144)
+....+-+.||.||+.+||.
T Consensus 42 ~~l~~L~~~ie~yl~~hp~s 61 (66)
T PF11647_consen 42 ETLYELRKQIEHYLLDHPDS 61 (66)
T ss_dssp HHHHHHHHHHHHHHHH-TT-
T ss_pred HHHHHHHHHHHHHHhcCCcc
Confidence 45556679999999999984
No 77
>PRK06860 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=31.11 E-value=88 Score=25.18 Aligned_cols=40 Identities=13% Similarity=0.135 Sum_probs=26.5
Q ss_pred EEEEEEEEcCCCCCChhhhhhHHHHHHHHHHHHHHHHhhCCCCC
Q 037023 100 KVAAECYLKAGEESKQEFVKDSQEKGTSLYRAVESHLLANPHLY 143 (144)
Q Consensus 100 ~w~~~ye~~~~~~~~~~~~~~~~~~~~~~~k~ie~yl~~~p~~~ 143 (144)
++.+.+++..+..+ .++.. +.+..+.+.+|+++.++|+-|
T Consensus 251 ~~~i~~~~~~~~~~-~~d~~---~~t~~~n~~lE~~Ir~~PeQw 290 (309)
T PRK06860 251 GYELIILPPEDSPP-LDDAE---ATAAWMNKVVEKCILMAPEQY 290 (309)
T ss_pred eEEEEEecCCCCCC-CCCHH---HHHHHHHHHHHHHHHcCchHH
Confidence 47777766433222 22232 566777899999999999865
No 78
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.58 E-value=63 Score=26.42 Aligned_cols=47 Identities=15% Similarity=0.130 Sum_probs=29.6
Q ss_pred CcEEEEEee-cCceeeEEee---eceEEEEEEEecCCCccceEEEEEEEEEEE
Q 037023 43 GTLKRYDFE-VLLNFKTGTH---DNFSIKYTIYERDGGWGIFEKVVYDIKFVA 91 (144)
Q Consensus 43 Gsir~l~~~-~g~~~~~~ke---~~~~~~y~vieG~~l~~~~~s~~~~~~v~p 91 (144)
||+|.|..+ +..|+...|| |=.++-|....+..+. .+|...|+|+=.
T Consensus 83 GSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~l--tsSWD~TiKLW~ 133 (311)
T KOG0277|consen 83 GSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFL--TSSWDGTIKLWD 133 (311)
T ss_pred ceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEE--eeccCCceEeec
Confidence 899999877 4567776777 4445555555555432 446666666543
No 79
>cd08910 START_STARD2-like Lipid-binding START domain of mammalian STARD2 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may have a mitochondrial function.
Probab=29.53 E-value=2.5e+02 Score=21.25 Aligned_cols=125 Identities=7% Similarity=-0.055 Sum_probs=62.3
Q ss_pred cCHHHHHHHHhhccccccccccCcceeEEEEecCCCCCCcEEEEEeecCce-----eeEEee------ece-E-E-EEEE
Q 037023 5 VAPSRMFEAVILDCHNLFPKLAPHAFKSIDILEGDGGDGTLKRYDFEVLLN-----FKTGTH------DNF-S-I-KYTI 70 (144)
Q Consensus 5 ~~a~k~w~~~~~d~~~llpk~~P~~i~sve~~eGdG~~Gsir~l~~~~g~~-----~~~~ke------~~~-~-~-~y~v 70 (144)
++++.|++++. |... -++|.+...+ +.-.+.++ -.|-.+.+..--| +.+... +.. . + ....
T Consensus 60 ~s~~~~~~~l~-D~~~-r~~Wd~~~~~-~~~~~~~~--~~i~y~~~k~PwPvs~RD~V~~r~~~~~~~~~~~~~iv~~~s 134 (207)
T cd08910 60 CSPSLLADVYM-DLEY-RKQWDQYVKE-LYEKECDG--ETVIYWEVKYPFPLSNRDYVYIRQRRDLDVEGRKIWVILARS 134 (207)
T ss_pred CCHHHHHHHHh-CHHH-HHHHHHHHHh-heeecCCC--CEEEEEEEEcCCCCCCceEEEEEEeccccCCCCeEEEEEecC
Confidence 79999999994 8776 7899996444 32222222 1222222211111 222211 111 1 1 1112
Q ss_pred EecCCCc-----cceEEEEEEEEEEEcCCCceEEEEEEEEEEcCCCCCChhhhhhHHHHHHHHHHHHHHH
Q 037023 71 YERDGGW-----GIFEKVVYDIKFVASGDSGCIYKVAAECYLKAGEESKQEFVKDSQEKGTSLYRAVESH 135 (144)
Q Consensus 71 ieG~~l~-----~~~~s~~~~~~v~p~~~ggs~v~w~~~ye~~~~~~~~~~~~~~~~~~~~~~~k~ie~y 135 (144)
++-+-++ -....+...+.++|.++++|.++....-.+.+.- |.----..+++..-.+++.+..-
T Consensus 135 ~~~p~~P~~~~~VRv~~~~~~~~i~p~~~~~t~i~~~~~~DPgG~I-P~wlvN~~~~~~~~~~l~~l~ka 203 (207)
T cd08910 135 TSLPQLPEKPGVIRVKQYKQSLAIESDGKKGSKVFMYYFDNPGGMI-PSWLINWAAKNGVPNFLKDMQKA 203 (207)
T ss_pred CCCCCCCCCCCCEEEEEEEEEEEEEeCCCCceEEEEEEEeCCCCcc-hHHHHHHHHHHhhHHHHHHHHHH
Confidence 2211111 1467788888899887777776666555555432 22111222445555666666543
No 80
>TIGR02207 lipid_A_htrB lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase. This model represents a narrow clade of acyltransferases, nearly all of which transfer a lauroyl group to KDO2-lipid IV-A, a lipid A precursor; these proteins are termed lipid A biosynthesis lauroyl acyltransferase, HtrB. An exception is a closely related paralog of E. coli HtrB, LpxP, which acts in cold shock conditions by transferring a palmitoleoyl rather than lauroyl group to the lipid A precursor. Members of this family are homologous to the family of acyltransferases responsible for the next step in lipid A biosynthesis.
Probab=29.13 E-value=97 Score=24.77 Aligned_cols=40 Identities=10% Similarity=0.087 Sum_probs=26.5
Q ss_pred EEEEEEEEcCCCCCChhhhhhHHHHHHHHHHHHHHHHhhCCCCC
Q 037023 100 KVAAECYLKAGEESKQEFVKDSQEKGTSLYRAVESHLLANPHLY 143 (144)
Q Consensus 100 ~w~~~ye~~~~~~~~~~~~~~~~~~~~~~~k~ie~yl~~~p~~~ 143 (144)
.+.+.+++..+..+ .++.. +.+..+.+.+|+++.++|+-|
T Consensus 245 ~~~i~~~~~~~~~~-~~~~~---~~t~~~~~~lE~~Ir~~P~QW 284 (303)
T TIGR02207 245 GYRLKIDPPLDDFP-GDDEI---AAAARMNKIVEKMIMRAPEQY 284 (303)
T ss_pred eEEEEEeCCCCCCC-CCCHH---HHHHHHHHHHHHHHHcCcHHH
Confidence 46677765432212 22333 667788999999999999865
No 81
>PRK08419 lipid A biosynthesis lauroyl acyltransferase; Reviewed
Probab=29.07 E-value=1.2e+02 Score=24.17 Aligned_cols=22 Identities=23% Similarity=0.252 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHhhCCCCC
Q 037023 122 QEKGTSLYRAVESHLLANPHLY 143 (144)
Q Consensus 122 ~~~~~~~~k~ie~yl~~~p~~~ 143 (144)
.+.+..+.+.+|+++.++|+-|
T Consensus 260 ~~~~~~~~~~lE~~Ir~~P~Qw 281 (298)
T PRK08419 260 LEATQAQASACEEMIRKKPDEY 281 (298)
T ss_pred HHHHHHHHHHHHHHHHhCchhh
Confidence 4677788899999999999865
No 82
>PRK08943 lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase; Validated
Probab=28.67 E-value=1e+02 Score=24.88 Aligned_cols=40 Identities=13% Similarity=0.104 Sum_probs=27.0
Q ss_pred EEEEEEEEcCCCCCChhhhhhHHHHHHHHHHHHHHHHhhCCCCC
Q 037023 100 KVAAECYLKAGEESKQEFVKDSQEKGTSLYRAVESHLLANPHLY 143 (144)
Q Consensus 100 ~w~~~ye~~~~~~~~~~~~~~~~~~~~~~~k~ie~yl~~~p~~~ 143 (144)
++.+.+++..+..+. ++.. +.+..+.+.+|+++.++|+-|
T Consensus 257 ~~~i~~~~~~~~~~~-~d~~---~~t~~~~~~lE~~Ir~~PeQw 296 (314)
T PRK08943 257 RLDIEIRPPMDDLLS-ADDE---TIARRMNEEVEQFVGPHPEQY 296 (314)
T ss_pred eEEEEEecCCCCCCC-CCHH---HHHHHHHHHHHHHHHcCcHHH
Confidence 577777664332222 2333 667788999999999999865
No 83
>PRK08706 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=27.65 E-value=99 Score=24.54 Aligned_cols=40 Identities=18% Similarity=0.242 Sum_probs=26.3
Q ss_pred EEEEEEEEcCCCCCChhhhhhHHHHHHHHHHHHHHHHhhCCCCC
Q 037023 100 KVAAECYLKAGEESKQEFVKDSQEKGTSLYRAVESHLLANPHLY 143 (144)
Q Consensus 100 ~w~~~ye~~~~~~~~~~~~~~~~~~~~~~~k~ie~yl~~~p~~~ 143 (144)
.+.+.+++..+..+ ++++. +.+..+.+.+|+++.++|+-|
T Consensus 232 ~~~i~i~~~~~~~~-~~~~~---~~t~~~~~~lE~~Ir~~P~QW 271 (289)
T PRK08706 232 TVTLHFYPAWDSFP-SEDAQ---ADAQRMNRFIEERVREHPEQY 271 (289)
T ss_pred cEEEEEecCCCCCC-CCCHH---HHHHHHHHHHHHHHHcCcHHH
Confidence 35666654322222 23333 678889999999999999854
No 84
>PRK08734 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=27.01 E-value=1.1e+02 Score=24.62 Aligned_cols=21 Identities=24% Similarity=0.352 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHhhCCCCC
Q 037023 123 EKGTSLYRAVESHLLANPHLY 143 (144)
Q Consensus 123 ~~~~~~~k~ie~yl~~~p~~~ 143 (144)
+.+..+.+.+|+++..+|+-|
T Consensus 258 ~~~~~~n~~lE~~Ir~~PeQw 278 (305)
T PRK08734 258 RAATALNAGIERIARRDPAQY 278 (305)
T ss_pred HHHHHHHHHHHHHHHcCcHHh
Confidence 567788999999999999865
No 85
>PRK14681 hypothetical protein; Provisional
Probab=26.48 E-value=2.7e+02 Score=20.65 Aligned_cols=69 Identities=19% Similarity=0.069 Sum_probs=43.4
Q ss_pred EEEEEEecCCCccceEEEEEEEEEEEcCCCceEEEEEEEEEEcCCCCCChhhhhhHHHHHHHHHHHHHHHHhhCCC
Q 037023 66 IKYTIYERDGGWGIFEKVVYDIKFVASGDSGCIYKVAAECYLKAGEESKQEFVKDSQEKGTSLYRAVESHLLANPH 141 (144)
Q Consensus 66 ~~y~vieG~~l~~~~~s~~~~~~v~p~~~ggs~v~w~~~ye~~~~~~~~~~~~~~~~~~~~~~~k~ie~yl~~~p~ 141 (144)
-.|+|++ .+|.+=..+|-++..++++++|=.-+++-+......+.+.+. ...-..+.++-+.||..|+.
T Consensus 60 ~Gy~IL~-----rN~R~~~GEIDIIa~d~~~~LVFVEVKtR~~~~~g~p~eaVt--~~Kqrrl~raA~~yL~~~~~ 128 (158)
T PRK14681 60 HGWTTLS-----RNWHCRYGELDIVALNPEYTIVFVEVKTRRSMHYGYPQEAVT--AAKQHNLRKAACDWLLERRN 128 (158)
T ss_pred CCCEEEE-----EEEeCCCCcEEEEEEcCCceEEEEEEEeccCCCCCChHHcCC--HHHHHHHHHHHHHHHHhCCC
Confidence 4566665 344444578888887654577777777755443333334332 24556788999999988763
No 86
>cd07984 LPLAT_LABLAT-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: LABLAT-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are such LPLATs as lipid A biosynthesis lauroyl/myristoyl (LABLAT, HtrB) acyltransferases and similar proteins.
Probab=26.46 E-value=1.3e+02 Score=21.64 Aligned_cols=22 Identities=23% Similarity=0.413 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHhhCCCCC
Q 037023 122 QEKGTSLYRAVESHLLANPHLY 143 (144)
Q Consensus 122 ~~~~~~~~k~ie~yl~~~p~~~ 143 (144)
.+.+..+.+.+|+.+.++|+.|
T Consensus 163 ~~~~~~~~~~lE~~i~~~P~qw 184 (192)
T cd07984 163 EEDTQRLNDALEAAIREHPEQW 184 (192)
T ss_pred HHHHHHHHHHHHHHHHhCchhh
Confidence 3777889999999999999865
No 87
>COG2122 Uncharacterized conserved protein [Function unknown]
Probab=25.82 E-value=94 Score=24.84 Aligned_cols=29 Identities=21% Similarity=0.281 Sum_probs=23.3
Q ss_pred ChhhhhhHHHHHHHHHHHHHHHHhhCCCC
Q 037023 114 KQEFVKDSQEKGTSLYRAVESHLLANPHL 142 (144)
Q Consensus 114 ~~~~~~~~~~~~~~~~k~ie~yl~~~p~~ 142 (144)
.++..+++.+++...--.+|.|+++||+.
T Consensus 30 ~~~~~~aa~~aV~~~R~~Le~yI~~nP~f 58 (256)
T COG2122 30 DEAHEKAAEEAVLRHRSELEDYILKNPEF 58 (256)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhCcch
Confidence 34566677788888888999999999963
No 88
>PRK08733 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=25.45 E-value=1.3e+02 Score=24.18 Aligned_cols=40 Identities=15% Similarity=0.135 Sum_probs=26.6
Q ss_pred EEEEEEEEcCCCCCChhhhhhHHHHHHHHHHHHHHHHhhCCCCC
Q 037023 100 KVAAECYLKAGEESKQEFVKDSQEKGTSLYRAVESHLLANPHLY 143 (144)
Q Consensus 100 ~w~~~ye~~~~~~~~~~~~~~~~~~~~~~~k~ie~yl~~~p~~~ 143 (144)
++.+.+++..+.. +++++. +.+..+.+.+|+++.++|+-|
T Consensus 248 ~y~i~i~~~~~~~-~~~~i~---~~t~~~~~~lE~~Ir~~P~Qw 287 (306)
T PRK08733 248 RYVLKIAPPLADF-PSDDVI---ADTTRVNAAIEDMVREAPDQY 287 (306)
T ss_pred eEEEEEECCCCCC-CCCCHH---HHHHHHHHHHHHHHHcCcHhh
Confidence 4666666533222 223343 677789999999999999865
No 89
>PF08473 VGCC_alpha2: Neuronal voltage-dependent calcium channel alpha 2acd; InterPro: IPR013680 Ca2+ ions are unique in that they not only carry charge but they are also the most widely used of diffusible second messengers. Voltage-dependent Ca2+ channels (VDCC) are a family of molecules that allow cells to couple electrical activity to intracellular Ca2+ signalling. The opening and closing of these channels by depolarizing stimuli, such as action potentials, allows Ca2+ ions to enter neurons down a steep electrochemical gradient, producing transient intracellular Ca2+ signals. Many of the processes that occur in neurons, including transmitter release, gene transcription and metabolism are controlled by Ca2+ influx occurring simultaneously at different cellular locales. The pore is formed by the alpha-1 subunit which incorporates the conduction pore, the voltage sensor and gating apparatus, and the known sites of channel regulation by second messengers, drugs, and toxins []. The activity of this pore is modulated by 4 tightly-coupled subunits: an intracellular beta subunit; a transmembrane gamma subunit; and a disulphide-linked complex of alpha-2 and delta subunits, which are proteolytically cleaved from the same gene product. Properties of the protein including gating voltage-dependence, G protein modulation and kinase susceptibility can be influenced by these subunits. Voltage-gated calcium channels are classified as T, L, N, P, Q and R, and are distinguished by their sensitivity to pharmacological blocks, single-channel conductance kinetics, and voltage-dependence. On the basis of their voltage activation properties, the voltage-gated calcium classes can be further divided into two broad groups: the low (T-type) and high (L, N, P, Q and R-type) threshold-activated channels. This eukaryotic domain has been found in the neuronal voltage-dependent calcium channel (VGCC) alpha 2a, 2c, and 2d subunits. It is also found in other calcium channel alpha-2/delta subunits to the N terminus of a Cache domain (IPR004010 from INTERPRO).
Probab=24.99 E-value=1.7e+02 Score=19.91 Aligned_cols=19 Identities=11% Similarity=-0.022 Sum_probs=15.9
Q ss_pred eEEeeeceEEEEEEEecCC
Q 037023 57 KTGTHDNFSIKYTIYERDG 75 (144)
Q Consensus 57 ~~~ke~~~~~~y~vieG~~ 75 (144)
.++.+.+++|+|+-|+|..
T Consensus 37 RYId~~~RtYtw~PI~gT~ 55 (94)
T PF08473_consen 37 RYIDEVNRTYTWTPINGTD 55 (94)
T ss_pred eeeeeeceeEEEeccCCCc
Confidence 4667799999999999875
No 90
>PRK05646 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=24.25 E-value=1.3e+02 Score=24.24 Aligned_cols=40 Identities=13% Similarity=-0.021 Sum_probs=25.9
Q ss_pred EEEEEEEEcCCCCCChhhhhhHHHHHHHHHHHHHHHHhhCCCCC
Q 037023 100 KVAAECYLKAGEESKQEFVKDSQEKGTSLYRAVESHLLANPHLY 143 (144)
Q Consensus 100 ~w~~~ye~~~~~~~~~~~~~~~~~~~~~~~k~ie~yl~~~p~~~ 143 (144)
.+.+.+++.-...+. ++.. +.+..+.+.+|+++.++|+-|
T Consensus 249 ~~~i~~~~~~~~~~~-~~~~---~~~~~~~~~lE~~Ir~~P~QW 288 (310)
T PRK05646 249 GYRLVIHPPLEDFPG-ESEE---ADCLRINQWVERVVRECPEQY 288 (310)
T ss_pred eEEEEEeCCCcCCCC-CCHH---HHHHHHHHHHHHHHHcCcHHH
Confidence 467777653322222 2232 446788999999999999854
No 91
>PF03279 Lip_A_acyltrans: Bacterial lipid A biosynthesis acyltransferase; InterPro: IPR004960 Bacterial lipopolysachharides (LPS) are glycolipids that make up the outer monolayer of the outer membranes of most Gram-negative bacteria. Though LPS moleculesare variable, they all show the same general features: an outer polysaccharide which is attached to the lipid component, termed lipid A []. The polysaccharide component consists of a variable repeat-structure polysaccharide known as the O-antigen, and a highly conserved short core oligosaccharide which connects the O-antigen to lipid A. Lipid A is a glucosamine-based phospholipid that makes up the membrane anchor region of LPS []. The structure of lipid A is relatively invariant between species, presumably reflecting its fundamental role in membrane integrity. Recognition of lipid A by the innate immune system can lead to a response even at picomolar levels. In some genera, such as Neisseria and Haemophilus, lipooligosaccharides (LOS) are the predominant glycolipids []. These are analogous to LPS except that they lack O-antigens, with the LOS oligosaccharide structures limited to 10 saccharide units. The bacterial lipid A biosynthesis protein, or lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase 2.3.1 from EC, transfers myristate or laurate, activated on ACP, to the lipid IVA moiety of (KDO)2-(lauroyl)-lipid IVA during lipopolysaccharide core biosynthesis.; GO: 0016746 transferase activity, transferring acyl groups, 0009244 lipopolysaccharide core region biosynthetic process, 0016021 integral to membrane
Probab=23.82 E-value=2.6e+02 Score=21.97 Aligned_cols=41 Identities=12% Similarity=0.058 Sum_probs=27.5
Q ss_pred EEEEEEEEEcCCCCCChhhhhhHHHHHHHHHHHHHHHHhhCCCCC
Q 037023 99 YKVAAECYLKAGEESKQEFVKDSQEKGTSLYRAVESHLLANPHLY 143 (144)
Q Consensus 99 v~w~~~ye~~~~~~~~~~~~~~~~~~~~~~~k~ie~yl~~~p~~~ 143 (144)
..|.+.+++.-+....+ +. .+.+..+.+.+|+.+.++|+-|
T Consensus 246 ~~~~~~i~~~~~~~~~~-~~---~~~~~~~~~~lE~~Ir~~P~QW 286 (295)
T PF03279_consen 246 SHYRIEIEPPLDFPSSE-DI---EELTQRYNDRLEEWIREHPEQW 286 (295)
T ss_pred CEEEEEEeecccCCccc-hH---HHHHHHHHHHHHHHHHcChHhh
Confidence 46677777643322222 22 3677888999999999999754
No 92
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=23.67 E-value=1.8e+02 Score=24.41 Aligned_cols=17 Identities=29% Similarity=0.571 Sum_probs=13.6
Q ss_pred EEcCCCceEEEEEEEEE
Q 037023 90 VASGDSGCIYKVAAECY 106 (144)
Q Consensus 90 ~p~~~ggs~v~w~~~ye 106 (144)
...|++||+--|.+.|-
T Consensus 304 sStGdDG~VRLWkany~ 320 (361)
T KOG2445|consen 304 SSTGDDGCVRLWKANYN 320 (361)
T ss_pred eecCCCceeeehhhhhh
Confidence 45677899999998884
No 93
>PRK08905 lipid A biosynthesis lauroyl acyltransferase; Validated
Probab=22.23 E-value=1.4e+02 Score=23.75 Aligned_cols=39 Identities=8% Similarity=-0.046 Sum_probs=25.7
Q ss_pred EEEEEEEEcCCCCCChhhhhhHHHHHHHHHHHHHHHHhhCCCCC
Q 037023 100 KVAAECYLKAGEESKQEFVKDSQEKGTSLYRAVESHLLANPHLY 143 (144)
Q Consensus 100 ~w~~~ye~~~~~~~~~~~~~~~~~~~~~~~k~ie~yl~~~p~~~ 143 (144)
++.+.+++..+. .+++.. +.+..+.+.+|+++.++|+-|
T Consensus 227 ~y~~~~~~~~~~--~~~~~~---~~t~~~~~~lE~~Ir~~PeQW 265 (289)
T PRK08905 227 GYRLHLRPVQEP--LPGDKA---ADAAVINAEIERLIRRFPTQY 265 (289)
T ss_pred cEEEEEecCCCC--CCCCHH---HHHHHHHHHHHHHHHcCcHHh
Confidence 355666554321 223333 677788899999999999854
No 94
>PRK06946 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=21.87 E-value=1.7e+02 Score=23.38 Aligned_cols=21 Identities=14% Similarity=0.232 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHhhCCCCC
Q 037023 123 EKGTSLYRAVESHLLANPHLY 143 (144)
Q Consensus 123 ~~~~~~~k~ie~yl~~~p~~~ 143 (144)
+.+..+.+.+|+++.++|+-|
T Consensus 255 ~~t~~~n~~lE~~Ir~~PeQw 275 (293)
T PRK06946 255 LDARRMNAFLEEQIRLMPEQY 275 (293)
T ss_pred HHHHHHHHHHHHHHHcCcHhH
Confidence 567788999999999999865
No 95
>cd08869 START_RhoGAP C-terminal lipid-binding START domain of mammalian STARD8, -12, -13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38), STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP), and STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. Some, including STARD12, -and -13, also have an N-terminal SAM (sterile alpha motif) domain; these have a SAM-RhoGAP-START domain organization. This subfamily is involved in cancer development. A large spectrum of cancers have dysregul
Probab=21.70 E-value=3.5e+02 Score=20.20 Aligned_cols=104 Identities=9% Similarity=0.031 Sum_probs=58.9
Q ss_pred ccccCHHHHHHHHhhccccccccccCcceeEEEEecCCCCCCcEEEEEeecCc--e-----eeEE---ee--e--ceEEE
Q 037023 2 PAAVAPSRMFEAVILDCHNLFPKLAPHAFKSIDILEGDGGDGTLKRYDFEVLL--N-----FKTG---TH--D--NFSIK 67 (144)
Q Consensus 2 ~~~~~a~k~w~~~~~d~~~llpk~~P~~i~sve~~eGdG~~Gsir~l~~~~g~--~-----~~~~---ke--~--~~~~~ 67 (144)
.++++++++++.+. |. -++|.+. +.+.++++--+. .+ ....+.-.. | +... .. + ...+.
T Consensus 51 ~v~a~~~~v~~~l~-d~---r~~Wd~~-~~~~~vie~id~-~~-~i~y~~~~~p~pv~~RDfV~~r~~~~~~~~g~~~i~ 123 (197)
T cd08869 51 EVEAPPEEVLQRIL-RE---RHLWDDD-LLQWKVVETLDE-DT-EVYQYVTNSMAPHPTRDYVVLRTWRTDLPKGACVLV 123 (197)
T ss_pred EeCCCHHHHHHHHH-HH---Hhccchh-hheEEEEEEecC-Cc-EEEEEEeeCCCCCCCceEEEEEEEEecCCCCcEEEE
Confidence 47889999999884 53 3799985 777777665321 12 222222111 1 1111 11 1 12323
Q ss_pred EEEEec-CCC-ccc--eEEEEEEEEEEEcCCCceEEEEEEEEEEcCCCC
Q 037023 68 YTIYER-DGG-WGI--FEKVVYDIKFVASGDSGCIYKVAAECYLKAGEE 112 (144)
Q Consensus 68 y~vieG-~~l-~~~--~~s~~~~~~v~p~~~ggs~v~w~~~ye~~~~~~ 112 (144)
.+-++- +.. ... ...+.+-.-++|.++++|.+++.+..++.|.-+
T Consensus 124 ~~Sv~~~~~~p~g~VR~~~~~~g~~i~p~~~~~t~vty~~~~Dp~G~iP 172 (197)
T cd08869 124 ETSVEHTEPVPLGGVRAVVLASRYLIEPCGSGKSRVTHICRVDLRGRSP 172 (197)
T ss_pred EECCcCCCCCCCCCEEEEEEeeeEEEEECCCCCeEEEEEEEECCCCCCC
Confidence 333321 111 112 345556778899887889999999999988643
No 96
>PF13410 GST_C_2: Glutathione S-transferase, C-terminal domain; PDB: 4DEJ_H 3IC8_A 2JL4_A 2V6K_B 3CBU_B 1JLW_B 3F6D_B 3G7I_A 3F63_A 3G7J_B ....
Probab=21.35 E-value=1.6e+02 Score=17.37 Aligned_cols=23 Identities=26% Similarity=0.411 Sum_probs=18.9
Q ss_pred hhhHHHHHHHHHHHHHHHHhhCC
Q 037023 118 VKDSQEKGTSLYRAVESHLLANP 140 (144)
Q Consensus 118 ~~~~~~~~~~~~k~ie~yl~~~p 140 (144)
.+.+.+.+...++.+|..|..+|
T Consensus 4 ~~~~~~~~~~~l~~le~~L~~~~ 26 (69)
T PF13410_consen 4 VERARAQLEAALDALEDHLADGP 26 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHHHHHHHHhhCC
Confidence 34566888889999999999887
No 97
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=21.11 E-value=2.8e+02 Score=24.50 Aligned_cols=46 Identities=13% Similarity=0.232 Sum_probs=31.4
Q ss_pred ceeEEEEecCCC------CCCcEEEEEeecCceeeEEee-----------------------eceEEEEEEEecC
Q 037023 29 AFKSIDILEGDG------GDGTLKRYDFEVLLNFKTGTH-----------------------DNFSIKYTIYERD 74 (144)
Q Consensus 29 ~i~sve~~eGdG------~~Gsir~l~~~~g~~~~~~ke-----------------------~~~~~~y~vieG~ 74 (144)
.|.+++++.+.- ..+++|.|++....+++++-. .|..+.|++++-.
T Consensus 344 ~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~ 418 (503)
T KOG0282|consen 344 AILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPF 418 (503)
T ss_pred heeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEeccccc
Confidence 466666665531 368999999988877654332 7888888887543
No 98
>PF01050 MannoseP_isomer: Mannose-6-phosphate isomerase; InterPro: IPR001538 Mannose-6-phosphate isomerase or phosphomannose isomerase (5.3.1.8 from EC) (PMI) is the enzyme that catalyses the interconversion of mannose-6-phosphate and fructose-6-phosphate. In eukaryotes PMI is involved in the synthesis of GDP-mannose, a constituent of N- and O-linked glycans and GPI anchors and in prokaryotes it participates in a variety of pathways, including capsular polysaccharide biosynthesis and D-mannose metabolism. PMI's belong to the cupin superfamily whose functions range from isomerase and epimerase activities involved in the modification of cell wall carbohydrates in bacteria and plants, to non-enzymatic storage proteins in plant seeds, and transcription factors linked to congenital baldness in mammals []. Three classes of PMI have been defined []. The type II phosphomannose isomerases are bifunctional enzymes 5.3.1.8 from EC. This entry covers the isomerase region of the protein []. The guanosine diphospho-D-mannose pyrophosphorylase region is described in another InterPro entry (see IPR005836 from INTERPRO).; GO: 0016779 nucleotidyltransferase activity, 0005976 polysaccharide metabolic process
Probab=21.06 E-value=1.5e+02 Score=21.69 Aligned_cols=33 Identities=15% Similarity=0.091 Sum_probs=27.5
Q ss_pred CcEEEEEeecCceeeEEeeeceEEEEEEEecCC
Q 037023 43 GTLKRYDFEVLLNFKTGTHDNFSIKYTIYERDG 75 (144)
Q Consensus 43 Gsir~l~~~~g~~~~~~ke~~~~~~y~vieG~~ 75 (144)
=.||.++..+|..+.+..|..+.=.+.++.|..
T Consensus 63 ~~vkri~V~pG~~lSlq~H~~R~E~W~Vv~G~a 95 (151)
T PF01050_consen 63 YKVKRITVNPGKRLSLQYHHHRSEHWTVVSGTA 95 (151)
T ss_pred EEEEEEEEcCCCccceeeecccccEEEEEeCeE
Confidence 357889999999888888877777899999874
No 99
>PF11164 DUF2948: Protein of unknown function (DUF2948); InterPro: IPR021335 This family of proteins with unknown function appear to be restricted to Proteobacteria.
Probab=20.04 E-value=2.4e+02 Score=20.57 Aligned_cols=27 Identities=15% Similarity=0.186 Sum_probs=19.8
Q ss_pred eeEEEEecCCCCCCcEEEEEeecCceee
Q 037023 30 FKSIDILEGDGGDGTLKRYDFEVLLNFK 57 (144)
Q Consensus 30 i~sve~~eGdG~~Gsir~l~~~~g~~~~ 57 (144)
+-+|++..|+...|.|. |+|..|+.+.
T Consensus 87 LLai~fe~~e~p~G~v~-L~fAGgg~Ir 113 (138)
T PF11164_consen 87 LLAITFEPGEAPAGHVL-LTFAGGGAIR 113 (138)
T ss_pred EEEEEEEeCCCCCcEEE-EEECCCcEEE
Confidence 66788888876566655 7898887654
Done!