BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037024
(238 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1A5J|A Chain A, Chicken B-Myb Dna Binding Domain, Repeat 2 And Repeat3,
Nmr, 32 Structures
Length = 110
Score = 96.7 bits (239), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 45/104 (43%), Positives = 66/104 (63%), Gaps = 2/104 (1%)
Query: 14 RGPWSAEEDSILKNYLEQFGNGGNWIALPKKAGLNRCGKSCRLRWLNYLRPDIKHGGFTK 73
+GPW+ EED + ++++G W + K R GK CR RW N+L P++K +T+
Sbjct: 7 KGPWTKEEDQKVIELVKKYGTK-QWTLIAKHLK-GRLGKQCRERWHNHLNPEVKKSSWTE 64
Query: 74 EEDTIICNLYCTMGSRWSVIASQLPGRTDNDVKNYWNTKLKKNV 117
EED II + +G+RW+ IA LPGRTDN VKN+WN+ +K+ V
Sbjct: 65 EEDRIIFEAHKVLGNRWAEIAKLLPGRTDNAVKNHWNSTIKRKV 108
>pdb|1H8A|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex3
Length = 128
Score = 95.1 bits (235), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 44/104 (42%), Positives = 67/104 (64%), Gaps = 2/104 (1%)
Query: 14 RGPWSAEEDSILKNYLEQFGNGGNWIALPKKAGLNRCGKSCRLRWLNYLRPDIKHGGFTK 73
+GPW+ EED + +++++G W + K R GK CR RW N+L P++K +T+
Sbjct: 27 KGPWTKEEDQRVIEHVQKYG-PKRWSDIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTE 84
Query: 74 EEDTIICNLYCTMGSRWSVIASQLPGRTDNDVKNYWNTKLKKNV 117
EED II + +G+RW+ IA LPGRTDN VKN+WN+ +++ V
Sbjct: 85 EEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNSTMRRKV 128
>pdb|1GV2|A Chain A, Crystal Structure Of C-Myb R2r3
Length = 105
Score = 94.0 bits (232), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 43/104 (41%), Positives = 66/104 (63%), Gaps = 2/104 (1%)
Query: 14 RGPWSAEEDSILKNYLEQFGNGGNWIALPKKAGLNRCGKSCRLRWLNYLRPDIKHGGFTK 73
+GPW+ EED + ++++G W + K R GK CR RW N+L P++K +T+
Sbjct: 4 KGPWTKEEDQRVIKLVQKYG-PKRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTE 61
Query: 74 EEDTIICNLYCTMGSRWSVIASQLPGRTDNDVKNYWNTKLKKNV 117
EED II + +G+RW+ IA LPGRTDN +KN+WN+ +++ V
Sbjct: 62 EEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 105
>pdb|1MSE|C Chain C, Solution Structure Of A Specific Dna Complex Of The Myb
Dna- Binding Domain With Cooperative Recognition Helices
pdb|1MSF|C Chain C, Solution Structure Of A Specific Dna Complex Of The Myb
Dna- Binding Domain With Cooperative Recognition Helices
Length = 105
Score = 94.0 bits (232), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 43/104 (41%), Positives = 66/104 (63%), Gaps = 2/104 (1%)
Query: 14 RGPWSAEEDSILKNYLEQFGNGGNWIALPKKAGLNRCGKSCRLRWLNYLRPDIKHGGFTK 73
+GPW+ EED + ++++G W + K R GK CR RW N+L P++K +T+
Sbjct: 4 KGPWTKEEDQRVIKLVQKYG-PKRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTE 61
Query: 74 EEDTIICNLYCTMGSRWSVIASQLPGRTDNDVKNYWNTKLKKNV 117
EED II + +G+RW+ IA LPGRTDN +KN+WN+ +++ V
Sbjct: 62 EEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 105
>pdb|1H88|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex1
pdb|1H89|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex2
Length = 159
Score = 94.0 bits (232), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 43/104 (41%), Positives = 66/104 (63%), Gaps = 2/104 (1%)
Query: 14 RGPWSAEEDSILKNYLEQFGNGGNWIALPKKAGLNRCGKSCRLRWLNYLRPDIKHGGFTK 73
+GPW+ EED + ++++G W + K R GK CR RW N+L P++K +T+
Sbjct: 58 KGPWTKEEDQRVIKLVQKYG-PKRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTE 115
Query: 74 EEDTIICNLYCTMGSRWSVIASQLPGRTDNDVKNYWNTKLKKNV 117
EED II + +G+RW+ IA LPGRTDN +KN+WN+ +++ V
Sbjct: 116 EEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 159
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Query: 71 FTKEEDTIICNLYCTMGSR-WSVIASQLPGRTDNDVKNYWNTKLKKNVLAGKLSDNTQVS 129
+T+EED + L G+ W VIA+ LP RTD ++ W L ++ G +
Sbjct: 9 WTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPELIKGPWTKEEDQR 68
Query: 130 VSTIPEEFGNSSYYLSADSAAGMI 153
V + +++G + + A G I
Sbjct: 69 VIKLVQKYGPKRWSVIAKHLKGRI 92
>pdb|3ZQC|A Chain A, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
pdb|3ZQC|D Chain D, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
pdb|3ZQC|G Chain G, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
pdb|3ZQC|J Chain J, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
Length = 131
Score = 88.2 bits (217), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 43/106 (40%), Positives = 63/106 (59%), Gaps = 6/106 (5%)
Query: 14 RGPWSAEEDSILKNYLEQFGNGGNWIALPKKAGL--NRCGKSCRLRWLNYLRPDIKHGGF 71
+GP++ ED +++ Y+++ G NW P+ NR K CR RW N+L P + +
Sbjct: 2 KGPFTEAEDDLIREYVKENG-PQNW---PRITSFLPNRSPKQCRERWFNHLDPAVVKHAW 57
Query: 72 TKEEDTIICNLYCTMGSRWSVIASQLPGRTDNDVKNYWNTKLKKNV 117
T EED I Y +GS+WSVIA +PGRTDN +KN WN+ + K +
Sbjct: 58 TPEEDETIFRNYLKLGSKWSVIAKLIPGRTDNAIKNRWNSSISKRI 103
>pdb|3OSF|A Chain A, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-2f-13 Dna
pdb|3OSF|D Chain D, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-2f-13 Dna
pdb|3OSG|A Chain A, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-1-12 Dna
pdb|3OSG|D Chain D, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-1-12 Dna
Length = 126
Score = 76.3 bits (186), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 39/99 (39%), Positives = 53/99 (53%), Gaps = 3/99 (3%)
Query: 13 KRGPWSAEEDSILKNYLEQFGNGGNWIALPKKAGLNRCGKSCRLRWLNYLRPDIKHGGFT 72
K+ ++ EED +LK + Q G+ IA NR + CR RW NYL P I H +T
Sbjct: 10 KKQKFTPEEDEMLKRAVAQHGSDWKMIA---ATFPNRNARQCRDRWKNYLAPSISHTPWT 66
Query: 73 KEEDTIICNLYCTMGSRWSVIASQLPGRTDNDVKNYWNT 111
EED ++ G +W++IA PGRTD +KN W T
Sbjct: 67 AEEDALLVQKIQEYGRQWAIIAKFFPGRTDIHIKNRWVT 105
Score = 34.7 bits (78), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 5/57 (8%)
Query: 67 KHGGFTKEEDTIICNLYCTMGSRWSVIASQLPGRTDNDVKNYWNTKLKKNVLAGKLS 123
K FT EED ++ GS W +IA+ P R ++ W KN LA +S
Sbjct: 10 KKQKFTPEEDEMLKRAVAQHGSDWKMIAATFPNRNARQCRDRW-----KNYLAPSIS 61
Score = 27.7 bits (60), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 19/30 (63%)
Query: 11 NVKRGPWSAEEDSILKNYLEQFGNGGNWIA 40
++ PW+AEED++L ++++G IA
Sbjct: 59 SISHTPWTAEEDALLVQKIQEYGRQWAIIA 88
>pdb|2K9N|A Chain A, Solution Nmr Structure Of The R2r3 Dna Binding Domain Of
Myb1 Protein From Protozoan Parasite Trichomonas
Vaginalis
pdb|2KDZ|A Chain A, Structure Of The R2r3 Dna Binding Domain Of Myb1 Protein
From Protozoan Parasite Trichomonas Vaginalis In Complex
With Mre-1MRE-2r Dna
Length = 107
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 52/92 (56%), Gaps = 2/92 (2%)
Query: 18 SAEEDSILKNYLEQFGNGGNWIALPKKAGLNRCGKSCRLRWLNYLRPDIKHGGFTKEEDT 77
+ EED L+ + ++G +WI + + + R + CR RW NY+ P ++ ++ EED
Sbjct: 5 TEEEDLKLQQLVMRYG-AKDWIRI-SQLMITRNPRQCRERWNNYINPALRTDPWSPEEDM 62
Query: 78 IICNLYCTMGSRWSVIASQLPGRTDNDVKNYW 109
++ Y G +W+ I+ L R+DN+++N W
Sbjct: 63 LLDQKYAEYGPKWNKISKFLKNRSDNNIRNRW 94
Score = 30.4 bits (67), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Query: 12 VKRGPWSAEEDSILKNYLEQFGNGGNWIALPKKAGLNRCGKSCRLRWLNYLRPDIKH 68
++ PWS EED +L ++G N I+ K NR + R RW+ R KH
Sbjct: 51 LRTDPWSPEEDMLLDQKYAEYGPKWNKIS---KFLKNRSDNNIRNRWMMIARHRAKH 104
>pdb|1MBJ|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 3
pdb|1MBK|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 3
Length = 53
Score = 57.4 bits (137), Expect = 8e-09, Method: Composition-based stats.
Identities = 24/52 (46%), Positives = 37/52 (71%)
Query: 66 IKHGGFTKEEDTIICNLYCTMGSRWSVIASQLPGRTDNDVKNYWNTKLKKNV 117
+K +T+EED II + +G+RW+ IA LPGRTDN +KN+WN+ +++ V
Sbjct: 1 VKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 52
>pdb|1IDY|A Chain A, Structure Of Myb Transforming Protein, Nmr, Minimized
Average Structure
pdb|1IDZ|A Chain A, Structure Of Myb Transforming Protein, Nmr, 20 Structures
Length = 54
Score = 57.0 bits (136), Expect = 1e-08, Method: Composition-based stats.
Identities = 23/53 (43%), Positives = 38/53 (71%)
Query: 65 DIKHGGFTKEEDTIICNLYCTMGSRWSVIASQLPGRTDNDVKNYWNTKLKKNV 117
++K +T+EED I+ + +G+RW+ IA LPGRTDN +KN+WN+ +++ V
Sbjct: 2 EVKKTSWTEEEDRILYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 54
>pdb|1GVD|A Chain A, Crystal Structure Of C-Myb R2 V103l Mutant
Length = 52
Score = 42.4 bits (98), Expect = 2e-04, Method: Composition-based stats.
Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 14 RGPWSAEEDSILKNYLEQFGNGGNWIALPKKAGLNRCGKSCRLRWLNYLRPD 65
+GPW+ EED L ++++G W + K R GK CR RW N+L P+
Sbjct: 3 KGPWTKEEDQRLIKLVQKYGPK-RWSVIAKHLK-GRIGKQCRERWHNHLNPE 52
Score = 35.0 bits (79), Expect = 0.035, Method: Composition-based stats.
Identities = 19/46 (41%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 69 GGFTKEEDTIICNLYCTMG-SRWSVIASQLPGRTDNDVKNYWNTKL 113
G +TKEED + L G RWSVIA L GR + W+ L
Sbjct: 4 GPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHL 49
>pdb|1GV5|A Chain A, Crystal Structure Of C-Myb R2
Length = 52
Score = 41.2 bits (95), Expect = 5e-04, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 14 RGPWSAEEDSILKNYLEQFGNGGNWIALPKKAGLNRCGKSCRLRWLNYLRPD 65
+GPW+ EED + ++++G W + K R GK CR RW N+L P+
Sbjct: 3 KGPWTKEEDQRVIKLVQKYGPK-RWSVIAKHLK-GRIGKQCRERWHNHLNPE 52
Score = 35.8 bits (81), Expect = 0.024, Method: Composition-based stats.
Identities = 19/46 (41%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 69 GGFTKEEDTIICNLYCTMG-SRWSVIASQLPGRTDNDVKNYWNTKL 113
G +TKEED + L G RWSVIA L GR + W+ L
Sbjct: 4 GPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHL 49
>pdb|1MBG|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 2
pdb|1MBH|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 2
Length = 53
Score = 41.2 bits (95), Expect = 5e-04, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 14 RGPWSAEEDSILKNYLEQFGNGGNWIALPKKAGLNRCGKSCRLRWLNYLRPD 65
+GPW+ EED + ++++G W + K R GK CR RW N+L P+
Sbjct: 3 KGPWTKEEDQRVIELVQKYGPK-RWSVIAKHLK-GRIGKQCRERWHNHLNPE 52
Score = 35.4 bits (80), Expect = 0.025, Method: Composition-based stats.
Identities = 19/46 (41%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 69 GGFTKEEDTIICNLYCTMG-SRWSVIASQLPGRTDNDVKNYWNTKL 113
G +TKEED + L G RWSVIA L GR + W+ L
Sbjct: 4 GPWTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHL 49
>pdb|2D9A|A Chain A, Solution Structure Of Rsgi Ruh-050, A Myb Dna-Binding
Domain In Mouse Cdna
Length = 60
Score = 30.0 bits (66), Expect = 1.1, Method: Composition-based stats.
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Query: 17 WSAEEDSILKNYLEQFGNGGNWIALPKKAGLNRCGKSCRLRWLNYL 62
W+ EED L+ + QFG +W L NR + C+ RWL L
Sbjct: 11 WTHEEDEQLRALVRQFGQ-QDWKFLASHFP-NRTDQQCQYRWLRVL 54
>pdb|1MBE|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 1
pdb|1MBF|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 1
Length = 53
Score = 29.3 bits (64), Expect = 2.2, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 71 FTKEEDTIICNLYCTMGSR-WSVIASQLPGRTDNDVKNYWNTKL 113
+T+EED + L G+ W VIA+ LP RTD ++ W L
Sbjct: 6 WTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVL 49
Score = 28.5 bits (62), Expect = 3.6, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Query: 17 WSAEEDSILKNYLEQFGNGGNWIALPKKAGLNRCGKSCRLRWLNYLRPD 65
W+ EED LK +EQ G +W + NR C+ RW L P+
Sbjct: 6 WTREEDEKLKKLVEQNGT-DDWKVIANYLP-NRTDVQCQHRWQKVLNPE 52
>pdb|1GUU|A Chain A, Crystal Structure Of C-Myb R1
Length = 52
Score = 29.3 bits (64), Expect = 2.2, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 71 FTKEEDTIICNLYCTMGSR-WSVIASQLPGRTDNDVKNYWNTKL 113
+T+EED + L G+ W VIA+ LP RTD ++ W L
Sbjct: 6 WTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVL 49
Score = 28.5 bits (62), Expect = 3.6, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Query: 17 WSAEEDSILKNYLEQFGNGGNWIALPKKAGLNRCGKSCRLRWLNYLRPD 65
W+ EED LK +EQ G +W + NR C+ RW L P+
Sbjct: 6 WTREEDEKLKKLVEQNGT-DDWKVIANYLP-NRTDVQCQHRWQKVLNPE 52
>pdb|1VBN|A Chain A, Escherichia Coli Tyrosyl-Trna Synthetase Mutant Complexed
With Tyr-Ams
pdb|1VBN|B Chain B, Escherichia Coli Tyrosyl-Trna Synthetase Mutant Complexed
With Tyr-Ams
Length = 318
Score = 28.5 bits (62), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 6/41 (14%)
Query: 200 NVEDEGILLDDFDFEYSYELLNGFDFEKASNE--VAQCLGG 238
N ED+GI E+SY LL G+DF + + V C+GG
Sbjct: 158 NREDQGISFT----EFSYNLLQGYDFACLNKQYGVVLCIGG 194
>pdb|1WQ4|A Chain A, Escherichia Coli Tyrosyl-Trna Synthetase Mutant Complexed
With L- Tyrosine
Length = 321
Score = 28.5 bits (62), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 6/41 (14%)
Query: 200 NVEDEGILLDDFDFEYSYELLNGFDFEKASNE--VAQCLGG 238
N ED+GI E+SY LL G+DF + + V C+GG
Sbjct: 161 NREDQGISFT----EFSYNLLQGYDFACLNKQYGVVLCIGG 197
>pdb|1WQ3|A Chain A, Escherichia Coli Tyrosyl-Trna Synthetase Mutant Comlexed
With 3-Iodo- L-Tyrosine
pdb|2YXN|A Chain A, Structual Basis Of Azido-Tyrosine Recognition By
Engineered Bacterial Tyrosyl-Trna Synthetase
Length = 322
Score = 28.5 bits (62), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 6/41 (14%)
Query: 200 NVEDEGILLDDFDFEYSYELLNGFDFEKASNE--VAQCLGG 238
N ED+GI E+SY LL G+DF + + V C+GG
Sbjct: 162 NREDQGISFT----EFSYNLLQGYDFACLNKQYGVVLCIGG 198
>pdb|2DIM|A Chain A, Solution Structure Of The Myb_dna-Binding Domain Of
Human Cell Division Cycle 5-Like Protein
Length = 70
Score = 28.5 bits (62), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Query: 17 WSAEEDSILKNYLEQFGNGGNWIALPKKAGLNR-CGKSCRLRWLNYLRPDIKHGGFT 72
W ED ILK + ++G W + + L+R K C+ RW +L P IK ++
Sbjct: 12 WRNTEDEILKAAVMKYGKN-QWSRIA--SLLHRKSAKQCKARWYEWLDPSIKKTEWS 65
>pdb|1OHE|A Chain A, Structure Of Cdc14b Phosphatase With A Peptide Ligand
Length = 348
Score = 27.3 bits (59), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 18 SAEEDSILKNYLEQFGNGGNWIALPKKAGLNRCG 51
S D+I+K +L+ N IA+ KAGL R G
Sbjct: 251 STPTDAIVKEFLDICENAEGAIAVHSKAGLGRTG 284
>pdb|3SJM|A Chain A, Crystal Structure Analysis Of Trf2-Dbd-Dna Complex
pdb|3SJM|B Chain B, Crystal Structure Analysis Of Trf2-Dbd-Dna Complex
Length = 64
Score = 26.9 bits (58), Expect = 8.7, Method: Composition-based stats.
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 13 KRGPWSAEEDSILKNYLEQFGNGGNWIALPKKAG-LNRCGKSCRLRW 58
K+ W+ EE +K ++++G GNW A+ K +NR + RW
Sbjct: 10 KKQKWTVEESEWVKAGVQKYGE-GNWAAISKNYPFVNRTAVMIKDRW 55
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.134 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,262,110
Number of Sequences: 62578
Number of extensions: 295103
Number of successful extensions: 556
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 504
Number of HSP's gapped (non-prelim): 46
length of query: 238
length of database: 14,973,337
effective HSP length: 96
effective length of query: 142
effective length of database: 8,965,849
effective search space: 1273150558
effective search space used: 1273150558
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 50 (23.9 bits)