Query 037024
Match_columns 238
No_of_seqs 300 out of 1867
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 13:00:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037024.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037024hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1h89_C C-MYB, MYB proto-oncoge 100.0 1E-39 3.6E-44 265.8 9.0 139 12-152 4-143 (159)
2 3zqc_A MYB3; transcription-DNA 100.0 2.6E-35 8.8E-40 232.7 11.0 110 14-125 2-111 (131)
3 1gv2_A C-MYB, MYB proto-oncoge 100.0 3.9E-35 1.3E-39 223.1 10.2 104 11-116 1-104 (105)
4 2k9n_A MYB24; R2R3 domain, DNA 100.0 4.7E-35 1.6E-39 223.6 7.6 104 14-119 1-104 (107)
5 3osg_A MYB21; transcription-DN 100.0 2.5E-34 8.6E-39 225.6 9.5 106 8-116 5-110 (126)
6 1h8a_C AMV V-MYB, MYB transfor 100.0 3.6E-34 1.2E-38 225.2 9.5 107 8-116 21-127 (128)
7 1h89_C C-MYB, MYB proto-oncoge 100.0 1.1E-31 3.7E-36 218.3 9.6 107 8-116 52-158 (159)
8 1h8a_C AMV V-MYB, MYB transfor 100.0 4.5E-31 1.5E-35 207.5 8.6 111 41-152 1-112 (128)
9 1gv2_A C-MYB, MYB proto-oncoge 99.9 6.5E-23 2.2E-27 155.5 8.7 88 65-152 1-89 (105)
10 3osg_A MYB21; transcription-DN 99.9 1.1E-22 3.6E-27 159.4 9.1 90 63-152 6-95 (126)
11 2dim_A Cell division cycle 5-l 99.9 2.9E-23 9.9E-28 146.5 3.2 67 8-76 3-69 (70)
12 2k9n_A MYB24; R2R3 domain, DNA 99.9 1.6E-22 5.4E-27 154.1 6.6 84 68-151 1-85 (107)
13 3zqc_A MYB3; transcription-DNA 99.9 5.5E-22 1.9E-26 156.2 9.1 85 68-152 2-87 (131)
14 2dim_A Cell division cycle 5-l 99.8 4.3E-21 1.5E-25 135.4 5.5 65 63-127 4-69 (70)
15 1ign_A Protein (RAP1); RAP1,ye 99.8 1.2E-19 4E-24 154.1 6.4 107 9-116 3-200 (246)
16 2llk_A Cyclin-D-binding MYB-li 99.8 1.6E-19 5.5E-24 128.0 4.7 60 54-114 9-68 (73)
17 2din_A Cell division cycle 5-l 99.8 7.1E-19 2.4E-23 122.5 5.2 60 61-121 2-61 (66)
18 2d9a_A B-MYB, MYB-related prot 99.7 2.2E-18 7.6E-23 117.8 5.7 56 63-118 3-59 (60)
19 2juh_A Telomere binding protei 99.7 9.6E-19 3.3E-23 135.1 3.0 84 8-92 11-103 (121)
20 2d9a_A B-MYB, MYB-related prot 99.7 2.3E-18 7.7E-23 117.7 4.0 57 9-67 3-59 (60)
21 1gvd_A MYB proto-oncogene prot 99.7 3.1E-18 1E-22 113.8 3.8 52 12-65 1-52 (52)
22 2cu7_A KIAA1915 protein; nucle 99.7 6.9E-18 2.4E-22 119.5 5.5 58 62-119 3-60 (72)
23 1guu_A C-MYB, MYB proto-oncoge 99.7 9E-18 3.1E-22 111.4 5.6 51 66-116 1-52 (52)
24 1gvd_A MYB proto-oncogene prot 99.7 1.2E-17 4E-22 110.9 6.0 51 66-116 1-52 (52)
25 2roh_A RTBP1, telomere binding 99.7 6.8E-18 2.3E-22 130.5 4.7 80 9-89 26-114 (122)
26 1ity_A TRF1; helix-turn-helix, 99.7 2.2E-17 7.5E-22 115.9 6.5 63 61-123 3-68 (69)
27 1guu_A C-MYB, MYB proto-oncoge 99.7 4.8E-18 1.6E-22 112.8 2.6 52 12-65 1-52 (52)
28 2juh_A Telomere binding protei 99.7 1.6E-17 5.5E-22 128.3 5.7 82 62-143 11-103 (121)
29 1ity_A TRF1; helix-turn-helix, 99.7 1E-17 3.5E-22 117.6 3.1 63 9-72 5-68 (69)
30 1x41_A Transcriptional adaptor 99.7 7.5E-17 2.6E-21 110.2 5.1 54 63-116 3-57 (60)
31 2yum_A ZZZ3 protein, zinc fing 99.6 1.3E-16 4.4E-21 113.7 5.0 60 63-122 3-68 (75)
32 1w0t_A Telomeric repeat bindin 99.6 1.9E-16 6.4E-21 105.5 5.4 49 67-115 1-52 (53)
33 3sjm_A Telomeric repeat-bindin 99.6 4.2E-17 1.4E-21 112.9 2.2 56 11-67 8-64 (64)
34 2roh_A RTBP1, telomere binding 99.6 3.3E-16 1.1E-20 121.1 7.2 78 64-141 27-115 (122)
35 3sjm_A Telomeric repeat-bindin 99.6 2.1E-16 7.2E-21 109.3 5.3 52 66-117 9-63 (64)
36 1x41_A Transcriptional adaptor 99.6 9.2E-17 3.1E-21 109.8 3.3 56 9-66 3-58 (60)
37 1ign_A Protein (RAP1); RAP1,ye 99.6 2.3E-16 8E-21 133.8 5.0 89 64-157 4-98 (246)
38 2din_A Cell division cycle 5-l 99.6 5.7E-17 2E-21 112.8 -0.3 59 8-70 3-61 (66)
39 2elk_A SPCC24B10.08C protein; 99.6 8.7E-16 3E-20 104.2 5.4 50 64-113 5-56 (58)
40 2yum_A ZZZ3 protein, zinc fing 99.6 1.9E-16 6.3E-21 112.9 1.0 62 8-70 2-67 (75)
41 2elk_A SPCC24B10.08C protein; 99.6 6E-16 2.1E-20 105.0 2.7 52 10-62 5-56 (58)
42 1w0t_A Telomeric repeat bindin 99.6 5.6E-16 1.9E-20 103.2 2.2 50 13-63 1-51 (53)
43 2ltp_A Nuclear receptor corepr 99.3 2.7E-16 9.4E-21 115.7 0.0 56 61-116 9-64 (89)
44 2cu7_A KIAA1915 protein; nucle 99.5 9.4E-16 3.2E-20 108.4 1.3 58 8-68 3-60 (72)
45 2aje_A Telomere repeat-binding 99.5 2.9E-14 9.9E-19 107.5 7.3 77 64-140 9-96 (105)
46 2aje_A Telomere repeat-binding 99.5 1.2E-14 4E-19 109.7 4.8 85 2-87 1-94 (105)
47 2cqr_A RSGI RUH-043, DNAJ homo 99.5 3.2E-14 1.1E-18 100.7 5.8 52 64-115 14-69 (73)
48 2llk_A Cyclin-D-binding MYB-li 99.5 2.1E-14 7E-19 101.6 3.2 57 7-68 16-72 (73)
49 2ckx_A NGTRF1, telomere bindin 99.5 1.5E-13 5E-18 99.6 7.5 68 69-136 1-79 (83)
50 2ckx_A NGTRF1, telomere bindin 99.4 4.5E-14 1.5E-18 102.3 4.4 69 15-85 1-79 (83)
51 2yus_A SWI/SNF-related matrix- 99.4 5.7E-14 2E-18 101.0 4.1 48 65-112 15-62 (79)
52 2yus_A SWI/SNF-related matrix- 99.4 6.7E-14 2.3E-18 100.6 4.1 53 6-61 10-62 (79)
53 2cqr_A RSGI RUH-043, DNAJ homo 99.4 1.5E-13 5.1E-18 97.2 2.5 57 6-63 10-68 (73)
54 2ltp_A Nuclear receptor corepr 99.1 5.3E-14 1.8E-18 103.4 0.0 55 7-64 9-63 (89)
55 1x58_A Hypothetical protein 49 99.3 1.7E-12 5.7E-17 88.2 6.0 50 66-115 6-58 (62)
56 2cjj_A Radialis; plant develop 99.3 3.7E-12 1.3E-16 94.1 4.8 49 67-115 7-59 (93)
57 2eqr_A N-COR1, N-COR, nuclear 99.1 1.9E-10 6.4E-15 78.5 5.4 48 67-114 11-58 (61)
58 2cjj_A Radialis; plant develop 99.0 3.1E-11 1.1E-15 89.1 0.9 49 13-62 7-57 (93)
59 3hm5_A DNA methyltransferase 1 99.0 2.7E-10 9.3E-15 83.7 4.7 65 52-120 18-87 (93)
60 1x58_A Hypothetical protein 49 98.9 4.1E-10 1.4E-14 76.4 2.6 49 12-63 6-57 (62)
61 2cqq_A RSGI RUH-037, DNAJ homo 98.9 1.5E-09 5.2E-14 76.4 4.6 50 65-115 5-58 (72)
62 2eqr_A N-COR1, N-COR, nuclear 98.8 1.5E-09 5.1E-14 73.9 3.3 51 8-61 6-56 (61)
63 2iw5_B Protein corest, REST co 98.8 7.7E-09 2.6E-13 87.1 5.8 49 67-115 132-180 (235)
64 1fex_A TRF2-interacting telome 98.7 1.6E-08 5.6E-13 68.3 4.7 47 68-114 2-58 (59)
65 1wgx_A KIAA1903 protein; MYB D 98.7 2.7E-08 9.4E-13 69.9 5.5 49 67-115 7-59 (73)
66 2cqq_A RSGI RUH-037, DNAJ homo 98.6 8.8E-09 3E-13 72.4 1.1 50 11-62 5-56 (72)
67 2xag_B REST corepressor 1; ami 98.6 3.5E-08 1.2E-12 91.9 4.4 47 69-115 381-427 (482)
68 1fex_A TRF2-interacting telome 98.5 2.1E-08 7.2E-13 67.8 1.3 48 14-63 2-58 (59)
69 1wgx_A KIAA1903 protein; MYB D 98.5 2.8E-08 9.5E-13 69.9 1.7 49 14-63 8-58 (73)
70 2iw5_B Protein corest, REST co 98.3 1.7E-07 5.7E-12 79.0 3.0 51 10-63 129-179 (235)
71 4eef_G F-HB80.4, designed hema 98.3 3.3E-07 1.1E-11 64.0 2.2 43 68-110 20-66 (74)
72 1ug2_A 2610100B20RIK gene prod 98.2 7.8E-07 2.7E-11 64.3 4.0 46 70-115 35-83 (95)
73 2yqk_A Arginine-glutamic acid 98.2 3.3E-06 1.1E-10 57.6 6.2 50 63-112 4-54 (63)
74 4eef_G F-HB80.4, designed hema 98.1 5.1E-07 1.8E-11 63.0 1.3 45 14-59 20-66 (74)
75 2lr8_A CAsp8-associated protei 97.4 2.8E-07 9.6E-12 63.1 0.0 44 70-114 16-62 (70)
76 1ofc_X ISWI protein; nuclear p 98.1 6.8E-06 2.3E-10 72.5 7.7 99 15-115 111-275 (304)
77 4iej_A DNA methyltransferase 1 97.9 1.9E-05 6.4E-10 57.7 5.3 61 56-120 22-87 (93)
78 2yqk_A Arginine-glutamic acid 97.9 9.7E-06 3.3E-10 55.2 3.6 49 8-59 3-52 (63)
79 4a69_C Nuclear receptor corepr 97.7 4.5E-05 1.6E-09 56.0 5.5 45 68-112 43-87 (94)
80 2crg_A Metastasis associated p 97.7 6.5E-05 2.2E-09 52.2 5.5 44 68-111 8-52 (70)
81 3hm5_A DNA methyltransferase 1 97.6 1.7E-05 5.8E-10 58.1 1.8 48 13-62 29-80 (93)
82 2xag_B REST corepressor 1; ami 97.5 3.4E-05 1.2E-09 71.8 2.9 48 11-61 377-424 (482)
83 1ug2_A 2610100B20RIK gene prod 97.4 7.3E-05 2.5E-09 54.0 2.2 51 10-61 29-80 (95)
84 2ebi_A DNA binding protein GT- 97.3 0.00011 3.9E-09 52.7 3.1 50 67-116 3-66 (86)
85 4a69_C Nuclear receptor corepr 97.3 9.6E-05 3.3E-09 54.3 2.3 43 14-59 43-85 (94)
86 2crg_A Metastasis associated p 97.2 0.00015 5.2E-09 50.3 2.4 44 13-59 7-51 (70)
87 2lr8_A CAsp8-associated protei 96.2 6.3E-05 2.2E-09 51.5 0.0 51 11-63 11-62 (70)
88 4b4c_A Chromodomain-helicase-D 96.9 0.00089 3E-08 55.6 4.8 103 12-115 5-196 (211)
89 2ebi_A DNA binding protein GT- 96.9 9.2E-05 3.1E-09 53.2 -1.4 50 13-62 3-63 (86)
90 2y9y_A Imitation switch protei 96.7 0.004 1.4E-07 56.2 8.0 101 15-116 124-292 (374)
91 4iej_A DNA methyltransferase 1 95.9 0.0033 1.1E-07 45.8 2.0 48 13-62 29-80 (93)
92 1ofc_X ISWI protein; nuclear p 95.8 0.028 9.7E-07 49.4 8.3 72 68-139 110-232 (304)
93 4b4c_A Chromodomain-helicase-D 94.8 0.026 8.9E-07 46.6 4.3 39 5-44 125-163 (211)
94 1irz_A ARR10-B; helix-turn-hel 94.2 0.083 2.8E-06 35.7 5.0 47 67-113 6-57 (64)
95 2xb0_X Chromo domain-containin 89.1 0.31 1E-05 42.1 3.9 28 15-43 169-196 (270)
96 2xb0_X Chromo domain-containin 88.4 0.27 9.3E-06 42.4 3.1 26 70-95 170-196 (270)
97 1irz_A ARR10-B; helix-turn-hel 87.2 0.38 1.3E-05 32.4 2.6 49 11-59 4-54 (64)
98 2y9y_A Imitation switch protei 80.3 5.9 0.0002 35.5 8.1 41 69-109 124-166 (374)
99 2rq5_A Protein jumonji; develo 67.8 9.4 0.00032 28.6 5.3 94 11-134 4-112 (121)
100 2li6_A SWI/SNF chromatin-remod 65.0 3.2 0.00011 30.9 2.1 39 78-116 53-99 (116)
101 2jrz_A Histone demethylase jar 63.7 6.5 0.00022 29.2 3.7 39 78-116 44-94 (117)
102 2lm1_A Lysine-specific demethy 61.5 7.9 0.00027 28.0 3.7 39 78-116 48-98 (107)
103 2kk0_A AT-rich interactive dom 61.3 21 0.0007 27.5 6.3 51 78-128 68-133 (145)
104 1kkx_A Transcription regulator 60.2 4.7 0.00016 30.3 2.3 39 78-116 52-98 (123)
105 2cxy_A BAF250B subunit, HBAF25 58.1 9.4 0.00032 28.6 3.7 39 78-116 55-105 (125)
106 2eqy_A RBP2 like, jumonji, at 57.7 9.3 0.00032 28.5 3.6 39 78-116 46-96 (122)
107 1c20_A DEAD ringer protein; DN 54.5 11 0.00039 28.2 3.7 49 77-125 55-118 (128)
108 2rq5_A Protein jumonji; develo 53.2 4.3 0.00015 30.6 1.0 59 23-84 45-113 (121)
109 2o8x_A Probable RNA polymerase 51.6 12 0.00043 23.8 3.1 43 71-115 16-58 (70)
110 3cz6_A DNA-binding protein RAP 50.5 13 0.00045 29.4 3.4 24 64-87 110-141 (168)
111 1ku3_A Sigma factor SIGA; heli 50.0 14 0.00047 24.3 3.1 43 71-115 11-57 (73)
112 2jxj_A Histone demethylase jar 48.7 6.6 0.00023 27.9 1.4 38 78-115 40-89 (96)
113 2li6_A SWI/SNF chromatin-remod 46.3 4.1 0.00014 30.2 -0.1 40 24-64 53-98 (116)
114 2p7v_B Sigma-70, RNA polymeras 46.0 15 0.00051 23.7 2.8 39 76-115 10-52 (68)
115 3i4p_A Transcriptional regulat 44.0 17 0.00059 27.9 3.3 45 74-119 3-48 (162)
116 1ig6_A MRF-2, modulator recogn 40.9 12 0.0004 27.2 1.7 39 78-116 37-88 (107)
117 1u78_A TC3 transposase, transp 40.3 99 0.0034 22.1 7.4 87 16-107 6-98 (141)
118 3cz6_A DNA-binding protein RAP 38.7 18 0.00062 28.6 2.6 25 10-34 110-142 (168)
119 3hug_A RNA polymerase sigma fa 35.6 29 0.00099 23.7 3.1 41 74-115 40-80 (92)
120 1k78_A Paired box protein PAX5 32.1 1.5E+02 0.005 21.7 7.0 67 68-136 30-105 (149)
121 1x3u_A Transcriptional regulat 30.4 54 0.0018 21.2 3.7 42 71-115 17-58 (79)
122 2q1z_A RPOE, ECF SIGE; ECF sig 30.0 43 0.0015 25.3 3.5 29 86-115 150-178 (184)
123 2k27_A Paired box protein PAX- 29.9 1.7E+02 0.0058 21.7 8.3 66 15-86 24-99 (159)
124 1pqr_A Alpha-A-conotoxin EIVA; 29.4 8.1 0.00028 21.3 -0.6 11 1-11 18-28 (31)
125 3ulq_B Transcriptional regulat 29.3 60 0.0021 22.3 3.9 47 67-116 26-72 (90)
126 2yqf_A Ankyrin-1; death domain 28.8 55 0.0019 23.5 3.7 35 72-107 14-48 (111)
127 1tty_A Sigma-A, RNA polymerase 28.4 47 0.0016 22.5 3.1 39 76-115 23-65 (87)
128 2e1c_A Putative HTH-type trans 28.4 50 0.0017 25.6 3.7 45 74-119 27-72 (171)
129 1tc3_C Protein (TC3 transposas 27.3 79 0.0027 17.7 3.7 38 70-109 5-42 (51)
130 2of5_A Death domain-containing 26.8 55 0.0019 24.0 3.4 29 78-107 26-54 (114)
131 2dbb_A Putative HTH-type trans 26.0 73 0.0025 23.6 4.1 44 74-118 9-53 (151)
132 1or7_A Sigma-24, RNA polymeras 25.8 63 0.0022 24.5 3.9 29 86-115 155-183 (194)
133 3c57_A Two component transcrip 25.3 63 0.0022 22.3 3.4 43 70-115 27-69 (95)
134 2of5_H Leucine-rich repeat and 25.1 53 0.0018 24.0 3.1 31 76-107 13-43 (118)
135 3e7l_A Transcriptional regulat 24.9 72 0.0025 20.2 3.4 34 74-108 19-52 (63)
136 2o71_A Death domain-containing 24.5 58 0.002 23.9 3.2 29 78-107 26-54 (115)
137 1je8_A Nitrate/nitrite respons 23.9 67 0.0023 21.4 3.2 43 70-115 21-63 (82)
138 2jvw_A Uncharacterized protein 23.6 42 0.0014 23.6 2.0 48 75-129 17-67 (88)
139 1fse_A GERE; helix-turn-helix 23.2 94 0.0032 19.6 3.8 44 69-115 10-53 (74)
140 2cyy_A Putative HTH-type trans 23.1 74 0.0025 23.7 3.7 45 74-119 7-52 (151)
141 1ntc_A Protein (nitrogen regul 23.0 1E+02 0.0035 21.1 4.1 35 73-108 50-84 (91)
142 1xsv_A Hypothetical UPF0122 pr 22.6 88 0.003 22.4 3.8 39 75-114 29-67 (113)
143 1wxp_A THO complex subunit 1; 22.5 93 0.0032 22.3 3.9 31 76-107 18-48 (110)
144 2jpc_A SSRB; DNA binding prote 21.7 93 0.0032 18.9 3.4 37 77-115 4-40 (61)
145 2p1m_A SKP1-like protein 1A; F 20.1 69 0.0023 24.6 2.9 35 91-132 119-153 (160)
No 1
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=100.00 E-value=1e-39 Score=265.77 Aligned_cols=139 Identities=28% Similarity=0.526 Sum_probs=95.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCCceecccccCCCCCcchhhhhhccccCCCCCCCCCCHHHHHHHHHHHHhhCC-ch
Q 037024 12 VKRGPWSAEEDSILKNYLEQFGNGGNWIALPKKAGLNRCGKSCRLRWLNYLRPDIKHGGFTKEEDTIICNLYCTMGS-RW 90 (238)
Q Consensus 12 ~~kg~WT~eED~~L~~~v~~~g~~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~L~p~i~k~~WT~eED~~L~~~v~~~G~-~W 90 (238)
+++++||+|||++|+++|.+||. .+|..||..|+ +|++.||++||.++|+|.+++++||+|||++|+++|..||. +|
T Consensus 4 ~~k~~Wt~eED~~L~~~v~~~g~-~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W 81 (159)
T 1h89_C 4 LGKTRWTREEDEKLKKLVEQNGT-DDWKVIANYLP-NRTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIKLVQKYGPKRW 81 (159)
T ss_dssp -----------------------------------------CHHHHHHTTTCTTCCCSCCCHHHHHHHHHHHHHHCSCCH
T ss_pred CCCCCCCHHHHHHHHHHHHHhCC-CCHHHHHHHcC-CCCHHHHHHHHHHccCCCcCCCCCChHHHHHHHHHHHHhCcccH
Confidence 48999999999999999999997 69999999998 99999999999999999999999999999999999999995 79
Q ss_pred hhhcccCCCCCHHHHHHHHHHhhchhhhcCCCChHHhHHHHhhhHHhCCCcccccccCCCCc
Q 037024 91 SVIASQLPGRTDNDVKNYWNTKLKKNVLAGKLSDNTQVSVSTIPEEFGNSSYYLSADSAAGM 152 (238)
Q Consensus 91 ~~Ia~~l~gRt~~~cr~Rw~~~l~~~~~~~~~t~~ed~~l~~~~~~~g~~~~~i~~~~~~~~ 152 (238)
..||..|||||+.||++||.++|.|.+++++||++||..|++++.+||++|..|+...++.+
T Consensus 82 ~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~g~~W~~Ia~~l~gRt 143 (159)
T 1h89_C 82 SVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRT 143 (159)
T ss_dssp HHHHHTSTTCCHHHHHHHHHHTTCTTSCCSCCCHHHHHHHHHHHHHHCSCHHHHHTTSTTCC
T ss_pred HHHHHHcCCCCHHHHHHHHHHHhCccccccCCChHHHHHHHHHHHHHCCCHHHHHHHCCCCC
Confidence 99999999999999999999999999999999999999999999999999999887766543
No 2
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=100.00 E-value=2.6e-35 Score=232.72 Aligned_cols=110 Identities=38% Similarity=0.769 Sum_probs=106.0
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCCceecccccCCCCCcchhhhhhccccCCCCCCCCCCHHHHHHHHHHHHhhCCchhhh
Q 037024 14 RGPWSAEEDSILKNYLEQFGNGGNWIALPKKAGLNRCGKSCRLRWLNYLRPDIKHGGFTKEEDTIICNLYCTMGSRWSVI 93 (238)
Q Consensus 14 kg~WT~eED~~L~~~v~~~g~~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~L~p~i~k~~WT~eED~~L~~~v~~~G~~W~~I 93 (238)
||+||+|||++|+++|..||. .+|..||..|+ +|++.||++||.++|+|.+++++||+|||++|+++|.+||++|+.|
T Consensus 2 Kg~Wt~eED~~L~~~v~~~g~-~~W~~Ia~~~~-~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~I 79 (131)
T 3zqc_A 2 KGPFTEAEDDLIREYVKENGP-QNWPRITSFLP-NRSPKQCRERWFNHLDPAVVKHAWTPEEDETIFRNYLKLGSKWSVI 79 (131)
T ss_dssp CSSCCHHHHHHHHHHHHHHCS-CCGGGGTTSCT-TSCHHHHHHHHHHHTSTTCCCSCCCHHHHHHHHHHHHHSCSCHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCc-CCHHHHHHHHC-CCCHHHHHHHHhhccCccccCCCCCHHHHHHHHHHHHHHCcCHHHH
Confidence 799999999999999999997 69999999998 9999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCHHHHHHHHHHhhchhhhcCCCChH
Q 037024 94 ASQLPGRTDNDVKNYWNTKLKKNVLAGKLSDN 125 (238)
Q Consensus 94 a~~l~gRt~~~cr~Rw~~~l~~~~~~~~~t~~ 125 (238)
|..|||||+++|++||+++|++.+..+.++.+
T Consensus 80 a~~l~gRt~~~~k~rw~~~l~~~~~~~~~~~~ 111 (131)
T 3zqc_A 80 AKLIPGRTDNAIKNRWNSSISKRISTNSNHKE 111 (131)
T ss_dssp TTTSTTCCHHHHHHHHHHTTGGGCCCCTTSCC
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHhhcCCCccc
Confidence 99999999999999999999999988887654
No 3
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=100.00 E-value=3.9e-35 Score=223.10 Aligned_cols=104 Identities=40% Similarity=0.853 Sum_probs=99.2
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCCceecccccCCCCCcchhhhhhccccCCCCCCCCCCHHHHHHHHHHHHhhCCch
Q 037024 11 NVKRGPWSAEEDSILKNYLEQFGNGGNWIALPKKAGLNRCGKSCRLRWLNYLRPDIKHGGFTKEEDTIICNLYCTMGSRW 90 (238)
Q Consensus 11 ~~~kg~WT~eED~~L~~~v~~~g~~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~L~p~i~k~~WT~eED~~L~~~v~~~G~~W 90 (238)
.+++|+||+|||++|+++|.+||. .+|..||..|+ +|++.||++||.++|+|.+++++||+|||++|+++|.+||++|
T Consensus 1 ~l~k~~WT~eED~~L~~~v~~~g~-~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W 78 (105)
T 1gv2_A 1 ELIKGPWTKEEDQRVIKLVQKYGP-KRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRW 78 (105)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHCT-TCHHHHHTTST-TCCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHHHHHHSSCH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCC-CcHHHHhhhhc-CCCHHHHHHHHHhccCCcccccCCCHHHHHHHHHHHHHhCCCH
Confidence 368999999999999999999998 68999999998 9999999999999999999999999999999999999999999
Q ss_pred hhhcccCCCCCHHHHHHHHHHhhchh
Q 037024 91 SVIASQLPGRTDNDVKNYWNTKLKKN 116 (238)
Q Consensus 91 ~~Ia~~l~gRt~~~cr~Rw~~~l~~~ 116 (238)
..||+.|||||+.+|++||+.++++.
T Consensus 79 ~~Ia~~l~gRt~~~~k~rw~~~~~~~ 104 (105)
T 1gv2_A 79 AEIAKLLPGRTDNAIKNHWNSTMRRK 104 (105)
T ss_dssp HHHHTTCTTCCHHHHHHHHHHHTC--
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHhcc
Confidence 99999999999999999999999875
No 4
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=100.00 E-value=4.7e-35 Score=223.58 Aligned_cols=104 Identities=27% Similarity=0.623 Sum_probs=100.0
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCCceecccccCCCCCcchhhhhhccccCCCCCCCCCCHHHHHHHHHHHHhhCCchhhh
Q 037024 14 RGPWSAEEDSILKNYLEQFGNGGNWIALPKKAGLNRCGKSCRLRWLNYLRPDIKHGGFTKEEDTIICNLYCTMGSRWSVI 93 (238)
Q Consensus 14 kg~WT~eED~~L~~~v~~~g~~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~L~p~i~k~~WT~eED~~L~~~v~~~G~~W~~I 93 (238)
||+||+|||++|+++|.+||. .+|..||..|+ +||++||++||.++|+|.+++++||+|||.+|+++|.+||++|..|
T Consensus 1 K~~Wt~eED~~L~~~v~~~g~-~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~~~~~~G~~W~~I 78 (107)
T 2k9n_A 1 KVKFTEEEDLKLQQLVMRYGA-KDWIRISQLMI-TRNPRQCRERWNNYINPALRTDPWSPEEDMLLDQKYAEYGPKWNKI 78 (107)
T ss_dssp CCSSCHHHHHHHHHHHHHHCS-SCHHHHHHHTT-TSCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHHHHHHTCSCHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCC-CCHHHHhhhcC-CCCHHHHHHHHHHHHcccccccccCHHHHHHHHHHHHHhCcCHHHH
Confidence 689999999999999999997 69999999998 9999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCHHHHHHHHHHhhchhhhc
Q 037024 94 ASQLPGRTDNDVKNYWNTKLKKNVLA 119 (238)
Q Consensus 94 a~~l~gRt~~~cr~Rw~~~l~~~~~~ 119 (238)
|+.|||||+++|++||+.++++..++
T Consensus 79 a~~l~gRt~~~~k~rw~~l~r~~~~~ 104 (107)
T 2k9n_A 79 SKFLKNRSDNNIRNRWMMIARHRAKH 104 (107)
T ss_dssp HHHHSSSCHHHHHHHHHHHHHHHHSS
T ss_pred HHHCCCCCHHHHHHHHHHHHhhHHHh
Confidence 99999999999999999999886554
No 5
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=100.00 E-value=2.5e-34 Score=225.65 Aligned_cols=106 Identities=37% Similarity=0.685 Sum_probs=101.7
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCCCCceecccccCCCCCcchhhhhhccccCCCCCCCCCCHHHHHHHHHHHHhhC
Q 037024 8 DKANVKRGPWSAEEDSILKNYLEQFGNGGNWIALPKKAGLNRCGKSCRLRWLNYLRPDIKHGGFTKEEDTIICNLYCTMG 87 (238)
Q Consensus 8 ~k~~~~kg~WT~eED~~L~~~v~~~g~~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~L~p~i~k~~WT~eED~~L~~~v~~~G 87 (238)
.+++.++|+||+|||++|+++|.+||. +|..||..|+ +|++.||++||.++|+|.+++++||+|||++|+++|.+||
T Consensus 5 ~~~~~kk~~WT~eED~~L~~~v~~~G~--~W~~Ia~~~~-~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~v~~~G 81 (126)
T 3osg_A 5 NLKAAKKQKFTPEEDEMLKRAVAQHGS--DWKMIAATFP-NRNARQCRDRWKNYLAPSISHTPWTAEEDALLVQKIQEYG 81 (126)
T ss_dssp C-CBCSSCCCCHHHHHHHHHHHHHHTT--CHHHHHHTCT-TCCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHHHHHHHC
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhCC--CHHHHHHHcC-CCCHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHC
Confidence 578899999999999999999999997 9999999998 9999999999999999999999999999999999999999
Q ss_pred CchhhhcccCCCCCHHHHHHHHHHhhchh
Q 037024 88 SRWSVIASQLPGRTDNDVKNYWNTKLKKN 116 (238)
Q Consensus 88 ~~W~~Ia~~l~gRt~~~cr~Rw~~~l~~~ 116 (238)
++|..||+.|||||+.+|++||+.++++.
T Consensus 82 ~~W~~Ia~~l~gRt~~~~k~rw~~l~~k~ 110 (126)
T 3osg_A 82 RQWAIIAKFFPGRTDIHIKNRWVTISNKL 110 (126)
T ss_dssp SCHHHHHTTSTTCCHHHHHHHHHHHHHHT
T ss_pred cCHHHHHHHcCCCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999999988763
No 6
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=100.00 E-value=3.6e-34 Score=225.19 Aligned_cols=107 Identities=40% Similarity=0.822 Sum_probs=102.3
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCCCCceecccccCCCCCcchhhhhhccccCCCCCCCCCCHHHHHHHHHHHHhhC
Q 037024 8 DKANVKRGPWSAEEDSILKNYLEQFGNGGNWIALPKKAGLNRCGKSCRLRWLNYLRPDIKHGGFTKEEDTIICNLYCTMG 87 (238)
Q Consensus 8 ~k~~~~kg~WT~eED~~L~~~v~~~g~~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~L~p~i~k~~WT~eED~~L~~~v~~~G 87 (238)
.+|.+++|+||+|||++|+++|.+||. .+|..||..|+ +||+.||++||.++|+|.+++++||+|||++|++++.+||
T Consensus 21 l~p~~~k~~Wt~eED~~L~~~v~~~g~-~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~G 98 (128)
T 1h8a_C 21 LNPELNKGPWTKEEDQRVIEHVQKYGP-KRWSDIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLG 98 (128)
T ss_dssp -CTTCCCSCCCHHHHHHHHHHHHHTCS-CCHHHHHHHSS-SCCHHHHHHHHHHTTCSSSCCSCCCHHHHHHHHHHHHHHC
T ss_pred hCCCCCCCCCCHHHHHHHHHHHHHHCC-CCHHHHHHHhc-CCcHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHC
Confidence 468999999999999999999999998 58999999998 9999999999999999999999999999999999999999
Q ss_pred CchhhhcccCCCCCHHHHHHHHHHhhchh
Q 037024 88 SRWSVIASQLPGRTDNDVKNYWNTKLKKN 116 (238)
Q Consensus 88 ~~W~~Ia~~l~gRt~~~cr~Rw~~~l~~~ 116 (238)
++|+.||+.|||||+++|++||+.++++.
T Consensus 99 ~~W~~Ia~~l~gRt~~~~k~r~~~~~~~~ 127 (128)
T 1h8a_C 99 NRWAEIAKLLPGRTDNAVKNHWNSTMRRK 127 (128)
T ss_dssp SCHHHHGGGSTTCCHHHHHHHHHTTTTC-
T ss_pred cCHHHHHHHCCCCCHHHHHHHHHHHHhcc
Confidence 99999999999999999999999998875
No 7
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=99.97 E-value=1.1e-31 Score=218.34 Aligned_cols=107 Identities=39% Similarity=0.820 Sum_probs=102.7
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCCCCceecccccCCCCCcchhhhhhccccCCCCCCCCCCHHHHHHHHHHHHhhC
Q 037024 8 DKANVKRGPWSAEEDSILKNYLEQFGNGGNWIALPKKAGLNRCGKSCRLRWLNYLRPDIKHGGFTKEEDTIICNLYCTMG 87 (238)
Q Consensus 8 ~k~~~~kg~WT~eED~~L~~~v~~~g~~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~L~p~i~k~~WT~eED~~L~~~v~~~G 87 (238)
..|.+++++||+|||++|+++|.+||. .+|..||..|+ +||+.||+.||.++|+|.+++++||++||.+|++++.+||
T Consensus 52 l~p~~~~~~Wt~eEd~~L~~~v~~~g~-~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~g 129 (159)
T 1h89_C 52 LNPELIKGPWTKEEDQRVIKLVQKYGP-KRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLG 129 (159)
T ss_dssp TCTTCCCSCCCHHHHHHHHHHHHHHCS-CCHHHHHHTST-TCCHHHHHHHHHHTTCTTSCCSCCCHHHHHHHHHHHHHHC
T ss_pred cCCCcCCCCCChHHHHHHHHHHHHhCc-ccHHHHHHHcC-CCCHHHHHHHHHHHhCccccccCCChHHHHHHHHHHHHHC
Confidence 468899999999999999999999997 58999999998 9999999999999999999999999999999999999999
Q ss_pred CchhhhcccCCCCCHHHHHHHHHHhhchh
Q 037024 88 SRWSVIASQLPGRTDNDVKNYWNTKLKKN 116 (238)
Q Consensus 88 ~~W~~Ia~~l~gRt~~~cr~Rw~~~l~~~ 116 (238)
++|..||+.|||||+++|++||+.++++.
T Consensus 130 ~~W~~Ia~~l~gRt~~~~knr~~~~~r~~ 158 (159)
T 1h89_C 130 NRWAEIAKLLPGRTDNAIKNHWNSTMRRK 158 (159)
T ss_dssp SCHHHHHTTSTTCCHHHHHHHHHTTTCC-
T ss_pred CCHHHHHHHCCCCCHHHHHHHHHHHHhcc
Confidence 99999999999999999999999998875
No 8
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.97 E-value=4.5e-31 Score=207.50 Aligned_cols=111 Identities=24% Similarity=0.446 Sum_probs=85.7
Q ss_pred cccccCCCCCcchhhhhhccccCCCCCCCCCCHHHHHHHHHHHHhhCC-chhhhcccCCCCCHHHHHHHHHHhhchhhhc
Q 037024 41 LPKKAGLNRCGKSCRLRWLNYLRPDIKHGGFTKEEDTIICNLYCTMGS-RWSVIASQLPGRTDNDVKNYWNTKLKKNVLA 119 (238)
Q Consensus 41 Ia~~~~~~Rt~~qcr~Rw~~~L~p~i~k~~WT~eED~~L~~~v~~~G~-~W~~Ia~~l~gRt~~~cr~Rw~~~l~~~~~~ 119 (238)
||+.|+ +||+.||+.||.++|+|.+++++||+|||++|+++|..||. +|..||..|||||+.||++||.++|.|.+++
T Consensus 1 Ia~~~~-~Rt~~qC~~Rw~~~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~ 79 (128)
T 1h8a_C 1 MEAVIK-NRTDVQCQHRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLNPEVKK 79 (128)
T ss_dssp ----------------------CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHHTTCSSSCC
T ss_pred CccccC-CCCHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHHhccccccc
Confidence 788887 99999999999999999999999999999999999999995 6999999999999999999999999999999
Q ss_pred CCCChHHhHHHHhhhHHhCCCcccccccCCCCc
Q 037024 120 GKLSDNTQVSVSTIPEEFGNSSYYLSADSAAGM 152 (238)
Q Consensus 120 ~~~t~~ed~~l~~~~~~~g~~~~~i~~~~~~~~ 152 (238)
++||++||..|+.++.+||++|..|+...++.+
T Consensus 80 ~~WT~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt 112 (128)
T 1h8a_C 80 TSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRT 112 (128)
T ss_dssp SCCCHHHHHHHHHHHHHHCSCHHHHGGGSTTCC
T ss_pred ccCCHHHHHHHHHHHHHHCcCHHHHHHHCCCCC
Confidence 999999999999999999999999987766543
No 9
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.88 E-value=6.5e-23 Score=155.45 Aligned_cols=88 Identities=25% Similarity=0.427 Sum_probs=82.6
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhCC-chhhhcccCCCCCHHHHHHHHHHhhchhhhcCCCChHHhHHHHhhhHHhCCCccc
Q 037024 65 DIKHGGFTKEEDTIICNLYCTMGS-RWSVIASQLPGRTDNDVKNYWNTKLKKNVLAGKLSDNTQVSVSTIPEEFGNSSYY 143 (238)
Q Consensus 65 ~i~k~~WT~eED~~L~~~v~~~G~-~W~~Ia~~l~gRt~~~cr~Rw~~~l~~~~~~~~~t~~ed~~l~~~~~~~g~~~~~ 143 (238)
++++++||+|||++|+++|..||. +|..||..|||||+.||++||.++|.|.+++++||++||..|+.++..||++|..
T Consensus 1 ~l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~ 80 (105)
T 1gv2_A 1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAE 80 (105)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHHHHHHSSCHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcCCCHHHHHHHHHhccCCcccccCCCHHHHHHHHHHHHHhCCCHHH
Confidence 368999999999999999999996 7999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCc
Q 037024 144 LSADSAAGM 152 (238)
Q Consensus 144 i~~~~~~~~ 152 (238)
|+...++.+
T Consensus 81 Ia~~l~gRt 89 (105)
T 1gv2_A 81 IAKLLPGRT 89 (105)
T ss_dssp HHTTCTTCC
T ss_pred HHHHcCCCC
Confidence 987766543
No 10
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.88 E-value=1.1e-22 Score=159.36 Aligned_cols=90 Identities=19% Similarity=0.328 Sum_probs=84.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhhCCchhhhcccCCCCCHHHHHHHHHHhhchhhhcCCCChHHhHHHHhhhHHhCCCcc
Q 037024 63 RPDIKHGGFTKEEDTIICNLYCTMGSRWSVIASQLPGRTDNDVKNYWNTKLKKNVLAGKLSDNTQVSVSTIPEEFGNSSY 142 (238)
Q Consensus 63 ~p~i~k~~WT~eED~~L~~~v~~~G~~W~~Ia~~l~gRt~~~cr~Rw~~~l~~~~~~~~~t~~ed~~l~~~~~~~g~~~~ 142 (238)
.+..++++||+|||++|+++|..||.+|..||..|||||+.||+.||.++|.+.+++++||++||..|+.++.+||++|.
T Consensus 6 ~~~~kk~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~v~~~G~~W~ 85 (126)
T 3osg_A 6 LKAAKKQKFTPEEDEMLKRAVAQHGSDWKMIAATFPNRNARQCRDRWKNYLAPSISHTPWTAEEDALLVQKIQEYGRQWA 85 (126)
T ss_dssp -CBCSSCCCCHHHHHHHHHHHHHHTTCHHHHHHTCTTCCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHHHHHHHCSCHH
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHCcCHH
Confidence 45688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCc
Q 037024 143 YLSADSAAGM 152 (238)
Q Consensus 143 ~i~~~~~~~~ 152 (238)
.|+...++..
T Consensus 86 ~Ia~~l~gRt 95 (126)
T 3osg_A 86 IIAKFFPGRT 95 (126)
T ss_dssp HHHTTSTTCC
T ss_pred HHHHHcCCCC
Confidence 9988776543
No 11
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.87 E-value=2.9e-23 Score=146.54 Aligned_cols=67 Identities=27% Similarity=0.632 Sum_probs=64.1
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCCCCceecccccCCCCCcchhhhhhccccCCCCCCCCCCHHHH
Q 037024 8 DKANVKRGPWSAEEDSILKNYLEQFGNGGNWIALPKKAGLNRCGKSCRLRWLNYLRPDIKHGGFTKEED 76 (238)
Q Consensus 8 ~k~~~~kg~WT~eED~~L~~~v~~~g~~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~L~p~i~k~~WT~eED 76 (238)
..|.+++++||+|||++|+++|.+||. .+|..||..|+ +||++||++||.++|+|.+++++||+|||
T Consensus 3 s~~~~k~~~Wt~eED~~L~~~v~~~G~-~~W~~Ia~~l~-~Rt~~qcr~Rw~~~L~p~i~~~~wt~eEd 69 (70)
T 2dim_A 3 SGSSGKGGVWRNTEDEILKAAVMKYGK-NQWSRIASLLH-RKSAKQCKARWYEWLDPSIKKTEWSGPSS 69 (70)
T ss_dssp SCSCSTTCCCCHHHHHHHHHHHHHTCS-SCHHHHHHHST-TCCHHHHHHHHHHTSCSSSCCCCSCCSCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCc-CCHHHHHHHhc-CCCHHHHHHHHHHHcCCcccCCCCChHhc
Confidence 467889999999999999999999997 59999999998 99999999999999999999999999998
No 12
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.86 E-value=1.6e-22 Score=154.05 Aligned_cols=84 Identities=19% Similarity=0.272 Sum_probs=79.2
Q ss_pred CCCCCHHHHHHHHHHHHhhCC-chhhhcccCCCCCHHHHHHHHHHhhchhhhcCCCChHHhHHHHhhhHHhCCCcccccc
Q 037024 68 HGGFTKEEDTIICNLYCTMGS-RWSVIASQLPGRTDNDVKNYWNTKLKKNVLAGKLSDNTQVSVSTIPEEFGNSSYYLSA 146 (238)
Q Consensus 68 k~~WT~eED~~L~~~v~~~G~-~W~~Ia~~l~gRt~~~cr~Rw~~~l~~~~~~~~~t~~ed~~l~~~~~~~g~~~~~i~~ 146 (238)
+++||+|||++|+++|..||. +|..||..|||||+.||+.||.++|.|.+++++||++||..|+.++..||++|..|+.
T Consensus 1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~~~~~~G~~W~~Ia~ 80 (107)
T 2k9n_A 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYINPALRTDPWSPEEDMLLDQKYAEYGPKWNKISK 80 (107)
T ss_dssp CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTTSCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHHHHHHTCSCHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCCCCHHHHHHHHHHHHcccccccccCHHHHHHHHHHHHHhCcCHHHHHH
Confidence 589999999999999999995 8999999999999999999999999999999999999999999999999999998877
Q ss_pred cCCCC
Q 037024 147 DSAAG 151 (238)
Q Consensus 147 ~~~~~ 151 (238)
..++.
T Consensus 81 ~l~gR 85 (107)
T 2k9n_A 81 FLKNR 85 (107)
T ss_dssp HHSSS
T ss_pred HCCCC
Confidence 66544
No 13
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.86 E-value=5.5e-22 Score=156.21 Aligned_cols=85 Identities=20% Similarity=0.322 Sum_probs=80.8
Q ss_pred CCCCCHHHHHHHHHHHHhhC-CchhhhcccCCCCCHHHHHHHHHHhhchhhhcCCCChHHhHHHHhhhHHhCCCcccccc
Q 037024 68 HGGFTKEEDTIICNLYCTMG-SRWSVIASQLPGRTDNDVKNYWNTKLKKNVLAGKLSDNTQVSVSTIPEEFGNSSYYLSA 146 (238)
Q Consensus 68 k~~WT~eED~~L~~~v~~~G-~~W~~Ia~~l~gRt~~~cr~Rw~~~l~~~~~~~~~t~~ed~~l~~~~~~~g~~~~~i~~ 146 (238)
+|+||+|||++|+++|..|| .+|..||..|||||+.||+.||.++|.|.+++++||++||..|+.++..||++|..|+.
T Consensus 2 Kg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~Ia~ 81 (131)
T 3zqc_A 2 KGPFTEAEDDLIREYVKENGPQNWPRITSFLPNRSPKQCRERWFNHLDPAVVKHAWTPEEDETIFRNYLKLGSKWSVIAK 81 (131)
T ss_dssp CSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCTTSCHHHHHHHHHHHTSTTCCCSCCCHHHHHHHHHHHHHSCSCHHHHTT
T ss_pred CCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHCCCCHHHHHHHHhhccCccccCCCCCHHHHHHHHHHHHHHCcCHHHHHH
Confidence 68999999999999999999 68999999999999999999999999999999999999999999999999999999988
Q ss_pred cCCCCc
Q 037024 147 DSAAGM 152 (238)
Q Consensus 147 ~~~~~~ 152 (238)
..++.+
T Consensus 82 ~l~gRt 87 (131)
T 3zqc_A 82 LIPGRT 87 (131)
T ss_dssp TSTTCC
T ss_pred HcCCCC
Confidence 776654
No 14
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=4.3e-21 Score=135.35 Aligned_cols=65 Identities=25% Similarity=0.357 Sum_probs=62.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhhC-CchhhhcccCCCCCHHHHHHHHHHhhchhhhcCCCChHHh
Q 037024 63 RPDIKHGGFTKEEDTIICNLYCTMG-SRWSVIASQLPGRTDNDVKNYWNTKLKKNVLAGKLSDNTQ 127 (238)
Q Consensus 63 ~p~i~k~~WT~eED~~L~~~v~~~G-~~W~~Ia~~l~gRt~~~cr~Rw~~~l~~~~~~~~~t~~ed 127 (238)
.|.+++++||+|||++|+++|.+|| ++|..||..|+|||++||++||+++|+|.+++++||++||
T Consensus 4 ~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~~L~p~i~~~~wt~eEd 69 (70)
T 2dim_A 4 GSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWSGPSS 69 (70)
T ss_dssp CSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHHTSCSSSCCCCSCCSCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHHHcCCcccCCCCChHhc
Confidence 4788999999999999999999999 7999999999999999999999999999999999999987
No 15
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=99.78 E-value=1.2e-19 Score=154.05 Aligned_cols=107 Identities=17% Similarity=0.259 Sum_probs=92.4
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCC----CceecccccCCCCCcchhhhhhccccCCCCC-----------------
Q 037024 9 KANVKRGPWSAEEDSILKNYLEQFGNGG----NWIALPKKAGLNRCGKSCRLRWLNYLRPDIK----------------- 67 (238)
Q Consensus 9 k~~~~kg~WT~eED~~L~~~v~~~g~~~----~W~~Ia~~~~~~Rt~~qcr~Rw~~~L~p~i~----------------- 67 (238)
.+.+++++||+|||++|+++|.+||... .|..||+.|+ |||+.||+.||..+|.+.++
T Consensus 3 ~~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~Lp-GRT~nsIRnRw~~~L~~~ln~vy~~ded~~Li~d~~G 81 (246)
T 1ign_A 3 LPSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVP-NHTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDDG 81 (246)
T ss_dssp -----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTST-TSCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTTS
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcC-CCCHHHHHHHHHHHHhhhcccccccCcchhhhhccCC
Confidence 4567899999999999999999998721 2999999998 99999999999999999986
Q ss_pred ------------CCCCCHHHHHHHHHHHHh-h------------------------------------------------
Q 037024 68 ------------HGGFTKEEDTIICNLYCT-M------------------------------------------------ 86 (238)
Q Consensus 68 ------------k~~WT~eED~~L~~~v~~-~------------------------------------------------ 86 (238)
+..||.+||-.|...+.+ +
T Consensus 82 n~ikis~lp~siK~rftaeeDy~L~~~i~~~f~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~ 161 (246)
T 1ign_A 82 NLIKTKVLPPSIKRKFSADEDYTLAIAVKKQFYRDLFQIDPDTGRSLITDEDTPTAIARRNMTMDPNHVPGSEPNFAAYR 161 (246)
T ss_dssp CBCEESSCCCCSCCCCCHHHHHHHHHHHHHHHHHHHHCBCSSSCCBCC-------------------------------C
T ss_pred CceeeeccCccccCccchhccHHHHHHHHHHHhhhhhhcCccccccccccccchhhhhhhhcccCccccccCCcchhhhc
Confidence 899999999999998876 1
Q ss_pred -----CC----chhhhcccCCCCCHHHHHHHHHHhhchh
Q 037024 87 -----GS----RWSVIASQLPGRTDNDVKNYWNTKLKKN 116 (238)
Q Consensus 87 -----G~----~W~~Ia~~l~gRt~~~cr~Rw~~~l~~~ 116 (238)
|. .|..||+.+|+||..++|+||...|+..
T Consensus 162 ~~~~~gp~~~~~fk~ia~~~P~HT~~SWRdRyrKfl~~~ 200 (246)
T 1ign_A 162 TQSRRGPIAREFFKHFAEEHAAHTENAWRDRFRKFLLAY 200 (246)
T ss_dssp CCCCCCCCCTTHHHHHHHHTTTSCHHHHHHHHHHTHHHH
T ss_pred cccccCcchHHHHHHHHHHCCCCChhhHHHHHHHHHhhc
Confidence 11 6999999999999999999999988764
No 16
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.77 E-value=1.6e-19 Score=128.00 Aligned_cols=60 Identities=23% Similarity=0.312 Sum_probs=47.6
Q ss_pred hhhhhccccCCCCCCCCCCHHHHHHHHHHHHhhCCchhhhcccCCCCCHHHHHHHHHHhhc
Q 037024 54 CRLRWLNYLRPDIKHGGFTKEEDTIICNLYCTMGSRWSVIASQLPGRTDNDVKNYWNTKLK 114 (238)
Q Consensus 54 cr~Rw~~~L~p~i~k~~WT~eED~~L~~~v~~~G~~W~~Ia~~l~gRt~~~cr~Rw~~~l~ 114 (238)
..-||.++|+|++++++||+|||++|++++.+||++|+.||+.| |||++|||+||+.+.+
T Consensus 9 ~~~~~~~~ldP~i~k~~wT~EED~~L~~l~~~~G~kW~~IA~~l-gRt~~q~knRw~~L~~ 68 (73)
T 2llk_A 9 SGRENLYFQGDRNHVGKYTPEEIEKLKELRIKHGNDWATIGAAL-GRSASSVKDRCRLMKD 68 (73)
T ss_dssp ----------CCCCCCSSCHHHHHHHHHHHHHHSSCHHHHHHHH-TSCHHHHHHHHHHCSC
T ss_pred cCcceeeecCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHh-CCCHHHHHHHHHHHHH
Confidence 44689999999999999999999999999999999999999999 9999999999986443
No 17
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=7.1e-19 Score=122.52 Aligned_cols=60 Identities=22% Similarity=0.294 Sum_probs=57.3
Q ss_pred ccCCCCCCCCCCHHHHHHHHHHHHhhCCchhhhcccCCCCCHHHHHHHHHHhhchhhhcCC
Q 037024 61 YLRPDIKHGGFTKEEDTIICNLYCTMGSRWSVIASQLPGRTDNDVKNYWNTKLKKNVLAGK 121 (238)
Q Consensus 61 ~L~p~i~k~~WT~eED~~L~~~v~~~G~~W~~Ia~~l~gRt~~~cr~Rw~~~l~~~~~~~~ 121 (238)
+|+|.+++++||+|||++|+++|..||.+|..||. ++|||++|||+||+++|++.++++.
T Consensus 2 ~L~P~~~k~~WT~eED~~L~~~~~~~g~~W~~Ia~-~~gRt~~qcr~Rw~~~l~~~~~~~~ 61 (66)
T 2din_A 2 SSGSSGKKTEWSREEEEKLLHLAKLMPTQWRTIAP-IIGRTAAQCLEHYEFLLDKAAQRDS 61 (66)
T ss_dssp CCSSSSSCCCCCHHHHHHHHHHHHHCTTCHHHHHH-HHSSCHHHHHHHHHHHHHHHHHSSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHcCCCHHHHhc-ccCcCHHHHHHHHHHHhChHhcCCC
Confidence 79999999999999999999999999999999999 8899999999999999999988654
No 18
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.74 E-value=2.2e-18 Score=117.76 Aligned_cols=56 Identities=27% Similarity=0.423 Sum_probs=53.1
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhhC-CchhhhcccCCCCCHHHHHHHHHHhhchhhh
Q 037024 63 RPDIKHGGFTKEEDTIICNLYCTMG-SRWSVIASQLPGRTDNDVKNYWNTKLKKNVL 118 (238)
Q Consensus 63 ~p~i~k~~WT~eED~~L~~~v~~~G-~~W~~Ia~~l~gRt~~~cr~Rw~~~l~~~~~ 118 (238)
+|.+++++||+|||++|+++|.+|| ++|..||..|||||+.||++||+++|+|.++
T Consensus 3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~i~ 59 (60)
T 2d9a_A 3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLSGPSS 59 (60)
T ss_dssp SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHHTSCSSSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHHHcCCccC
Confidence 5789999999999999999999999 6999999999999999999999999999764
No 19
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.73 E-value=9.6e-19 Score=135.12 Aligned_cols=84 Identities=17% Similarity=0.236 Sum_probs=77.6
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCCCCceecccccC---CCCCcchhhhhhccccC-----CCCCCC-CCCHHHHHH
Q 037024 8 DKANVKRGPWSAEEDSILKNYLEQFGNGGNWIALPKKAG---LNRCGKSCRLRWLNYLR-----PDIKHG-GFTKEEDTI 78 (238)
Q Consensus 8 ~k~~~~kg~WT~eED~~L~~~v~~~g~~~~W~~Ia~~~~---~~Rt~~qcr~Rw~~~L~-----p~i~k~-~WT~eED~~ 78 (238)
.++..++++||+|||+.|+++|.+||. ++|..|+..+. .+||..||++||++++. |.++++ +|+++|+.+
T Consensus 11 ~~~rr~r~~WT~EEd~~L~~gV~k~G~-G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~~~~p~~krg~~~p~e~~~r 89 (121)
T 2juh_A 11 LSQRRIRRPFSVAEVEALVEAVEHLGT-GRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDR 89 (121)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHHHGG-GCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHHHTCSTTCCCSCCCHHHHHH
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHCC-CCHHHHHHHhccccCCCCHHHHHHHHHHHHhhhccCCcccCCCCCCHHHHHH
Confidence 356789999999999999999999998 79999998851 39999999999999998 999999 999999999
Q ss_pred HHHHHHhhCCchhh
Q 037024 79 ICNLYCTMGSRWSV 92 (238)
Q Consensus 79 L~~~v~~~G~~W~~ 92 (238)
|+.++..+|++|..
T Consensus 90 v~~~h~~~gn~~~~ 103 (121)
T 2juh_A 90 VLAAHAYWSQQQGK 103 (121)
T ss_dssp HHHHHHHHHHHHCC
T ss_pred HHHHHHHHccchhc
Confidence 99999999999977
No 20
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.72 E-value=2.3e-18 Score=117.71 Aligned_cols=57 Identities=30% Similarity=0.619 Sum_probs=53.9
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCCceecccccCCCCCcchhhhhhccccCCCCC
Q 037024 9 KANVKRGPWSAEEDSILKNYLEQFGNGGNWIALPKKAGLNRCGKSCRLRWLNYLRPDIK 67 (238)
Q Consensus 9 k~~~~kg~WT~eED~~L~~~v~~~g~~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~L~p~i~ 67 (238)
.|.+++++||+|||++|+++|.+||. .+|..||..|+ +||+.||++||.++|+|.++
T Consensus 3 ~p~~~k~~Wt~eED~~L~~~v~~~G~-~~W~~Ia~~~~-~Rt~~qcr~Rw~~~l~p~i~ 59 (60)
T 2d9a_A 3 SGSSGKVKWTHEEDEQLRALVRQFGQ-QDWKFLASHFP-NRTDQQCQYRWLRVLSGPSS 59 (60)
T ss_dssp SCCCCCSCCCHHHHHHHHHHHHHTCT-TCHHHHHHHCS-SSCHHHHHHHHHHTSCSSSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCC-CCHHHHHHHcc-CCCHHHHHHHHHHHcCCccC
Confidence 57889999999999999999999996 59999999998 99999999999999999875
No 21
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.71 E-value=3.1e-18 Score=113.75 Aligned_cols=52 Identities=38% Similarity=0.878 Sum_probs=49.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCCceecccccCCCCCcchhhhhhccccCCC
Q 037024 12 VKRGPWSAEEDSILKNYLEQFGNGGNWIALPKKAGLNRCGKSCRLRWLNYLRPD 65 (238)
Q Consensus 12 ~~kg~WT~eED~~L~~~v~~~g~~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~L~p~ 65 (238)
+++++||+|||++|+++|.+||. .+|..||..|+ +||+.||+.||.++|+|+
T Consensus 1 l~k~~Wt~eED~~L~~~v~~~G~-~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1gvd_A 1 LIKGPWTKEEDQRLIKLVQKYGP-KRWSVIAKHLK-GRIGKQCRERWHNHLNPE 52 (52)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHCT-TCHHHHHTTST-TCCHHHHHHHHHHTTSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCc-ChHHHHHHHcC-CCCHHHHHHHHHHHcCcC
Confidence 57899999999999999999998 58999999998 999999999999999985
No 22
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.71 E-value=6.9e-18 Score=119.51 Aligned_cols=58 Identities=24% Similarity=0.280 Sum_probs=55.8
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHhhCCchhhhcccCCCCCHHHHHHHHHHhhchhhhc
Q 037024 62 LRPDIKHGGFTKEEDTIICNLYCTMGSRWSVIASQLPGRTDNDVKNYWNTKLKKNVLA 119 (238)
Q Consensus 62 L~p~i~k~~WT~eED~~L~~~v~~~G~~W~~Ia~~l~gRt~~~cr~Rw~~~l~~~~~~ 119 (238)
++|.+++++||+|||++|+++|..||.+|..||..|||||++|||+||++++++.++.
T Consensus 3 ~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~r~~~~l~~~~~~ 60 (72)
T 2cu7_A 3 SGSSGYSVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKC 60 (72)
T ss_dssp CCCSSCCCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHSCS
T ss_pred CCCCcCCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHHHhc
Confidence 5789999999999999999999999999999999999999999999999999998776
No 23
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.71 E-value=9e-18 Score=111.43 Aligned_cols=51 Identities=33% Similarity=0.590 Sum_probs=47.2
Q ss_pred CCCCCCCHHHHHHHHHHHHhhCC-chhhhcccCCCCCHHHHHHHHHHhhchh
Q 037024 66 IKHGGFTKEEDTIICNLYCTMGS-RWSVIASQLPGRTDNDVKNYWNTKLKKN 116 (238)
Q Consensus 66 i~k~~WT~eED~~L~~~v~~~G~-~W~~Ia~~l~gRt~~~cr~Rw~~~l~~~ 116 (238)
+++++||+|||++|+++|.+||. +|..||..|||||+.||++||+++|+|.
T Consensus 1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1guu_A 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPE 52 (52)
T ss_dssp --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHHcCcC
Confidence 47899999999999999999997 9999999999999999999999999873
No 24
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.71 E-value=1.2e-17 Score=110.94 Aligned_cols=51 Identities=37% Similarity=0.696 Sum_probs=48.2
Q ss_pred CCCCCCCHHHHHHHHHHHHhhCC-chhhhcccCCCCCHHHHHHHHHHhhchh
Q 037024 66 IKHGGFTKEEDTIICNLYCTMGS-RWSVIASQLPGRTDNDVKNYWNTKLKKN 116 (238)
Q Consensus 66 i~k~~WT~eED~~L~~~v~~~G~-~W~~Ia~~l~gRt~~~cr~Rw~~~l~~~ 116 (238)
+++++||+|||++|+++|.+||. +|..||..|+|||+.||++||.++|+|.
T Consensus 1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1gvd_A 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPE 52 (52)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHHHcCcC
Confidence 57899999999999999999996 6999999999999999999999999873
No 25
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.70 E-value=6.8e-18 Score=130.52 Aligned_cols=80 Identities=18% Similarity=0.279 Sum_probs=72.7
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCCceecccccC---CCCCcchhhhhhcccc-----CCCCCCCCCCHHH-HHHH
Q 037024 9 KANVKRGPWSAEEDSILKNYLEQFGNGGNWIALPKKAG---LNRCGKSCRLRWLNYL-----RPDIKHGGFTKEE-DTII 79 (238)
Q Consensus 9 k~~~~kg~WT~eED~~L~~~v~~~g~~~~W~~Ia~~~~---~~Rt~~qcr~Rw~~~L-----~p~i~k~~WT~eE-D~~L 79 (238)
+...++++||+|||+.|+++|++||. ++|..|++.+. .+||+.||++||.+++ +|.++++.|+++| +.+|
T Consensus 26 ~~rr~r~~WT~EEd~~L~~gV~k~G~-g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~~~~p~~kr~~~~p~e~~~~v 104 (122)
T 2roh_A 26 GQRRIRRPFTVAEVELLVEAVEHLGT-GRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTASIAPQQRRGAPVPQELLDRV 104 (122)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHHSS-SCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHHHSCTTTCCCSSCCHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCC-CChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCccccCCCCCCHHHHHHH
Confidence 34568899999999999999999998 79999998641 3999999999999999 8999999999999 8999
Q ss_pred HHHHHhhCCc
Q 037024 80 CNLYCTMGSR 89 (238)
Q Consensus 80 ~~~v~~~G~~ 89 (238)
+.++..+|++
T Consensus 105 ~~~h~~~g~~ 114 (122)
T 2roh_A 105 LAAQAYWSVD 114 (122)
T ss_dssp HHHHHHHHSS
T ss_pred HHHHHHHhhH
Confidence 9999999975
No 26
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.70 E-value=2.2e-17 Score=115.94 Aligned_cols=63 Identities=22% Similarity=0.260 Sum_probs=57.4
Q ss_pred ccCCCCCCCCCCHHHHHHHHHHHHhhC-CchhhhcccCC--CCCHHHHHHHHHHhhchhhhcCCCC
Q 037024 61 YLRPDIKHGGFTKEEDTIICNLYCTMG-SRWSVIASQLP--GRTDNDVKNYWNTKLKKNVLAGKLS 123 (238)
Q Consensus 61 ~L~p~i~k~~WT~eED~~L~~~v~~~G-~~W~~Ia~~l~--gRt~~~cr~Rw~~~l~~~~~~~~~t 123 (238)
...|..++++||+|||++|+++|.+|| ++|..||..|+ |||+.||++||.++|++.+.++..+
T Consensus 3 ~~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k~~~~ 68 (69)
T 1ity_A 3 EKHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISSDSE 68 (69)
T ss_dssp CTTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCCCCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCCCCCC
Confidence 345678899999999999999999999 69999999999 9999999999999999998876553
No 27
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.69 E-value=4.8e-18 Score=112.76 Aligned_cols=52 Identities=33% Similarity=0.702 Sum_probs=48.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCCceecccccCCCCCcchhhhhhccccCCC
Q 037024 12 VKRGPWSAEEDSILKNYLEQFGNGGNWIALPKKAGLNRCGKSCRLRWLNYLRPD 65 (238)
Q Consensus 12 ~~kg~WT~eED~~L~~~v~~~g~~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~L~p~ 65 (238)
+++++||+|||++|+++|.+||. ++|..||+.|+ +||+.||+.||.++|+|+
T Consensus 1 i~~~~Wt~eED~~L~~~v~~~G~-~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1guu_A 1 LGKTRWTREEDEKLKKLVEQNGT-DDWKVIANYLP-NRTDVQCQHRWQKVLNPE 52 (52)
T ss_dssp --CCCCCHHHHHHHHHHHHHHCS-SCHHHHHHTST-TCCHHHHHHHHHHHHSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCC-CCHHHHHHHcC-CCCHHHHHHHHHHHcCcC
Confidence 47899999999999999999998 69999999998 999999999999999985
No 28
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.69 E-value=1.6e-17 Score=128.28 Aligned_cols=82 Identities=17% Similarity=0.225 Sum_probs=75.5
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHhhCC-chhhhccc----CCCCCHHHHHHHHHHhhc-----hhhhcC-CCChHHhHHH
Q 037024 62 LRPDIKHGGFTKEEDTIICNLYCTMGS-RWSVIASQ----LPGRTDNDVKNYWNTKLK-----KNVLAG-KLSDNTQVSV 130 (238)
Q Consensus 62 L~p~i~k~~WT~eED~~L~~~v~~~G~-~W~~Ia~~----l~gRt~~~cr~Rw~~~l~-----~~~~~~-~~t~~ed~~l 130 (238)
+.+..++++||.|||+.|+++|.+||. +|+.|++. |+|||+.+||+||+++++ |.++++ .|+++++..|
T Consensus 11 ~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~~~~p~~krg~~~p~e~~~rv 90 (121)
T 2juh_A 11 LSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRV 90 (121)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHHHTCSTTCCCSCCCHHHHHHH
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhhccCCcccCCCCCCHHHHHHH
Confidence 456788999999999999999999996 99999987 489999999999999999 888888 8888899999
Q ss_pred HhhhHHhCCCccc
Q 037024 131 STIPEEFGNSSYY 143 (238)
Q Consensus 131 ~~~~~~~g~~~~~ 143 (238)
+.++..+||+|+.
T Consensus 91 ~~~h~~~gn~~~~ 103 (121)
T 2juh_A 91 LAAHAYWSQQQGK 103 (121)
T ss_dssp HHHHHHHHHHHCC
T ss_pred HHHHHHHccchhc
Confidence 9999999999885
No 29
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.68 E-value=1e-17 Score=117.64 Aligned_cols=63 Identities=24% Similarity=0.419 Sum_probs=57.9
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCCceecccccCC-CCCcchhhhhhccccCCCCCCCCCC
Q 037024 9 KANVKRGPWSAEEDSILKNYLEQFGNGGNWIALPKKAGL-NRCGKSCRLRWLNYLRPDIKHGGFT 72 (238)
Q Consensus 9 k~~~~kg~WT~eED~~L~~~v~~~g~~~~W~~Ia~~~~~-~Rt~~qcr~Rw~~~L~p~i~k~~WT 72 (238)
++..++++||+|||++|+++|.+||. ++|..||..|+. +||+.||++||.++|+|.+.++..+
T Consensus 5 ~~~~~r~~WT~eED~~L~~~v~~~G~-~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k~~~~ 68 (69)
T 1ity_A 5 HRARKRQAWLWEEDKNLRSGVRKYGE-GNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISSDSE 68 (69)
T ss_dssp TCSSSCCCCCHHHHHHHHHHHHHHCS-SCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCCCCCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCC-CcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCCCCCC
Confidence 56778999999999999999999997 699999999975 8999999999999999999988754
No 30
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.66 E-value=7.5e-17 Score=110.21 Aligned_cols=54 Identities=13% Similarity=0.255 Sum_probs=50.6
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhhC-CchhhhcccCCCCCHHHHHHHHHHhhchh
Q 037024 63 RPDIKHGGFTKEEDTIICNLYCTMG-SRWSVIASQLPGRTDNDVKNYWNTKLKKN 116 (238)
Q Consensus 63 ~p~i~k~~WT~eED~~L~~~v~~~G-~~W~~Ia~~l~gRt~~~cr~Rw~~~l~~~ 116 (238)
.+.+.+++||+|||++|+++|..|| ++|..||+.|||||+.||++||.++|.+.
T Consensus 3 s~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~~~ 57 (60)
T 1x41_A 3 SGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFSGP 57 (60)
T ss_dssp CCCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHTTCS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHccCC
Confidence 4678999999999999999999999 79999999999999999999999998763
No 31
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=1.3e-16 Score=113.73 Aligned_cols=60 Identities=25% Similarity=0.235 Sum_probs=55.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhhC------CchhhhcccCCCCCHHHHHHHHHHhhchhhhcCCC
Q 037024 63 RPDIKHGGFTKEEDTIICNLYCTMG------SRWSVIASQLPGRTDNDVKNYWNTKLKKNVLAGKL 122 (238)
Q Consensus 63 ~p~i~k~~WT~eED~~L~~~v~~~G------~~W~~Ia~~l~gRt~~~cr~Rw~~~l~~~~~~~~~ 122 (238)
+|.+.+++||+|||++|+++|..|| .+|..||.+|+|||+.||++||+++|.+.++.|..
T Consensus 3 ~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~~~k~g~~ 68 (75)
T 2yum_A 3 SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKLTKAGIP 68 (75)
T ss_dssp CCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGGGSTTCSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCC
Confidence 5788999999999999999999999 68999999999999999999999999998877654
No 32
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.64 E-value=1.9e-16 Score=105.52 Aligned_cols=49 Identities=29% Similarity=0.350 Sum_probs=46.3
Q ss_pred CCCCCCHHHHHHHHHHHHhhC-CchhhhcccCC--CCCHHHHHHHHHHhhch
Q 037024 67 KHGGFTKEEDTIICNLYCTMG-SRWSVIASQLP--GRTDNDVKNYWNTKLKK 115 (238)
Q Consensus 67 ~k~~WT~eED~~L~~~v~~~G-~~W~~Ia~~l~--gRt~~~cr~Rw~~~l~~ 115 (238)
++++||+|||++|+++|..|| ++|..||..|| |||+.||++||.++++.
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k~ 52 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKL 52 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHcc
Confidence 478999999999999999999 69999999999 99999999999999874
No 33
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.64 E-value=4.2e-17 Score=112.88 Aligned_cols=56 Identities=29% Similarity=0.577 Sum_probs=49.4
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCCceecccccC-CCCCcchhhhhhccccCCCCC
Q 037024 11 NVKRGPWSAEEDSILKNYLEQFGNGGNWIALPKKAG-LNRCGKSCRLRWLNYLRPDIK 67 (238)
Q Consensus 11 ~~~kg~WT~eED~~L~~~v~~~g~~~~W~~Ia~~~~-~~Rt~~qcr~Rw~~~L~p~i~ 67 (238)
..+|++||+|||++|+++|.+||. ++|..||+.++ .+||+.||++||.++++|.++
T Consensus 8 ~~kk~~WT~eED~~L~~~V~~~G~-~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~glN 64 (64)
T 3sjm_A 8 ITKKQKWTVEESEWVKAGVQKYGE-GNWAAISKNYPFVNRTAVMIKDRWRTMKRLGMN 64 (64)
T ss_dssp --CCCCCCHHHHHHHHHHHHHHCT-TCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTCC
T ss_pred CCCCCCCCHHHHHHHHHHHHccCC-CchHHHHhhcCCCCCCHHHHHHHHHHHhccCCC
Confidence 357899999999999999999998 69999998764 389999999999999998764
No 34
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.64 E-value=3.3e-16 Score=121.06 Aligned_cols=78 Identities=19% Similarity=0.237 Sum_probs=70.8
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhhCC-chhhhccc----CCCCCHHHHHHHHHHhh-----chhhhcCCCChHH-hHHHHh
Q 037024 64 PDIKHGGFTKEEDTIICNLYCTMGS-RWSVIASQ----LPGRTDNDVKNYWNTKL-----KKNVLAGKLSDNT-QVSVST 132 (238)
Q Consensus 64 p~i~k~~WT~eED~~L~~~v~~~G~-~W~~Ia~~----l~gRt~~~cr~Rw~~~l-----~~~~~~~~~t~~e-d~~l~~ 132 (238)
...++++||.|||+.|+++|.+||. +|..|++. +++||+.+||+||.+++ .+.++++.|+++| +..|+.
T Consensus 27 ~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~~~~p~~kr~~~~p~e~~~~v~~ 106 (122)
T 2roh_A 27 QRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTASIAPQQRRGAPVPQELLDRVLA 106 (122)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHHHSCTTTCCCSSCCHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCccccCCCCCCHHHHHHHHH
Confidence 3457889999999999999999995 99999986 48999999999999999 6888999999999 788999
Q ss_pred hhHHhCCCc
Q 037024 133 IPEEFGNSS 141 (238)
Q Consensus 133 ~~~~~g~~~ 141 (238)
++..+|++.
T Consensus 107 ~h~~~g~~~ 115 (122)
T 2roh_A 107 AQAYWSVDS 115 (122)
T ss_dssp HHHHHHSSC
T ss_pred HHHHHhhHH
Confidence 999999874
No 35
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.63 E-value=2.1e-16 Score=109.33 Aligned_cols=52 Identities=25% Similarity=0.414 Sum_probs=47.7
Q ss_pred CCCCCCCHHHHHHHHHHHHhhC-CchhhhcccCC--CCCHHHHHHHHHHhhchhh
Q 037024 66 IKHGGFTKEEDTIICNLYCTMG-SRWSVIASQLP--GRTDNDVKNYWNTKLKKNV 117 (238)
Q Consensus 66 i~k~~WT~eED~~L~~~v~~~G-~~W~~Ia~~l~--gRt~~~cr~Rw~~~l~~~~ 117 (238)
.++++||+|||++|+++|.+|| .+|..||+.+| |||+.||++||.+++++.+
T Consensus 9 ~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~gl 63 (64)
T 3sjm_A 9 TKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM 63 (64)
T ss_dssp -CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccCC
Confidence 4789999999999999999999 58999999866 9999999999999998865
No 36
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.63 E-value=9.2e-17 Score=109.76 Aligned_cols=56 Identities=18% Similarity=0.456 Sum_probs=51.7
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCCceecccccCCCCCcchhhhhhccccCCCC
Q 037024 9 KANVKRGPWSAEEDSILKNYLEQFGNGGNWIALPKKAGLNRCGKSCRLRWLNYLRPDI 66 (238)
Q Consensus 9 k~~~~kg~WT~eED~~L~~~v~~~g~~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~L~p~i 66 (238)
.+++.+++||+|||++|+++|.+||. .+|..||+.|+ +||+.||+.||.++|.+..
T Consensus 3 s~~~~~~~WT~eED~~L~~~v~~~G~-~~W~~Ia~~~~-~Rt~~qcr~r~~~~l~~~~ 58 (60)
T 1x41_A 3 SGSSGDPSWTAQEEMALLEAVMDCGF-GNWQDVANQMC-TKTKEECEKHYMKYFSGPS 58 (60)
T ss_dssp CCCCCCSSSCHHHHHHHHHHHHHTCT-TCHHHHHHHHT-TSCHHHHHHHHHHHTTCSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCc-CcHHHHHHHhC-CCCHHHHHHHHHHHccCCC
Confidence 46789999999999999999999997 59999999998 9999999999999998753
No 37
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=99.62 E-value=2.3e-16 Score=133.82 Aligned_cols=89 Identities=19% Similarity=0.215 Sum_probs=72.6
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhhCCc------hhhhcccCCCCCHHHHHHHHHHhhchhhhcCCCChHHhHHHHhhhHHh
Q 037024 64 PDIKHGGFTKEEDTIICNLYCTMGSR------WSVIASQLPGRTDNDVKNYWNTKLKKNVLAGKLSDNTQVSVSTIPEEF 137 (238)
Q Consensus 64 p~i~k~~WT~eED~~L~~~v~~~G~~------W~~Ia~~l~gRt~~~cr~Rw~~~l~~~~~~~~~t~~ed~~l~~~~~~~ 137 (238)
+.+++++||+|||++|+++|+++|++ |..||+.|||||++|||+||+++|++.+... |+.+++..|+..++
T Consensus 4 ~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~~ln~v-y~~ded~~Li~d~~-- 80 (246)
T 1ign_A 4 PSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLEYV-YEVDKFGKLVRDDD-- 80 (246)
T ss_dssp ----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCCCE-ECBCTTSCBCBCTT--
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHHhhhcccc-cccCcchhhhhccC--
Confidence 45788999999999999999999875 9999999999999999999999999998855 88888888887777
Q ss_pred CCCcccccccCCCCcccCCC
Q 037024 138 GNSSYYLSADSAAGMIFDPS 157 (238)
Q Consensus 138 g~~~~~i~~~~~~~~~~~~~ 157 (238)
|+ |..++ .++..+++++.
T Consensus 81 Gn-~ikis-~lp~siK~rft 98 (246)
T 1ign_A 81 GN-LIKTK-VLPPSIKRKFS 98 (246)
T ss_dssp SC-BCEES-SCCCCSCCCCC
T ss_pred CC-ceeee-ccCccccCccc
Confidence 77 77666 55555454443
No 38
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=5.7e-17 Score=112.80 Aligned_cols=59 Identities=17% Similarity=0.303 Sum_probs=54.1
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCCCCceecccccCCCCCcchhhhhhccccCCCCCCCC
Q 037024 8 DKANVKRGPWSAEEDSILKNYLEQFGNGGNWIALPKKAGLNRCGKSCRLRWLNYLRPDIKHGG 70 (238)
Q Consensus 8 ~k~~~~kg~WT~eED~~L~~~v~~~g~~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~L~p~i~k~~ 70 (238)
..|.+++++||+|||++|+++|..||. +|..||+ ++ +||+.||+.||.++|+|.++++.
T Consensus 3 L~P~~~k~~WT~eED~~L~~~~~~~g~--~W~~Ia~-~~-gRt~~qcr~Rw~~~l~~~~~~~~ 61 (66)
T 2din_A 3 SGSSGKKTEWSREEEEKLLHLAKLMPT--QWRTIAP-II-GRTAAQCLEHYEFLLDKAAQRDS 61 (66)
T ss_dssp CSSSSSCCCCCHHHHHHHHHHHHHCTT--CHHHHHH-HH-SSCHHHHHHHHHHHHHHHHHSSS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHcCC--CHHHHhc-cc-CcCHHHHHHHHHHHhChHhcCCC
Confidence 578999999999999999999999997 9999999 76 89999999999999998776653
No 39
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.60 E-value=8.7e-16 Score=104.18 Aligned_cols=50 Identities=16% Similarity=0.342 Sum_probs=46.6
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhhC-CchhhhcccCC-CCCHHHHHHHHHHhh
Q 037024 64 PDIKHGGFTKEEDTIICNLYCTMG-SRWSVIASQLP-GRTDNDVKNYWNTKL 113 (238)
Q Consensus 64 p~i~k~~WT~eED~~L~~~v~~~G-~~W~~Ia~~l~-gRt~~~cr~Rw~~~l 113 (238)
..+.+++||++||++|+++|.+|| ++|..||+.|+ +||+.||++||.+++
T Consensus 5 ~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 5 SSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY 56 (58)
T ss_dssp CCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence 456789999999999999999999 89999999999 999999999999775
No 40
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=1.9e-16 Score=112.89 Aligned_cols=62 Identities=21% Similarity=0.349 Sum_probs=55.9
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCC----CCceecccccCCCCCcchhhhhhccccCCCCCCCC
Q 037024 8 DKANVKRGPWSAEEDSILKNYLEQFGNG----GNWIALPKKAGLNRCGKSCRLRWLNYLRPDIKHGG 70 (238)
Q Consensus 8 ~k~~~~kg~WT~eED~~L~~~v~~~g~~----~~W~~Ia~~~~~~Rt~~qcr~Rw~~~L~p~i~k~~ 70 (238)
.+|.+.+++||+|||++|+++|.+||.. .+|..||..|+ +||+.||+.||.++|.+.++.|.
T Consensus 2 s~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~-~Rt~~qcr~r~~~~l~~~~k~g~ 67 (75)
T 2yum_A 2 SSGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELG-NRTAKQVASQVQKYFIKLTKAGI 67 (75)
T ss_dssp CCCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHS-SSCHHHHHHHHHHHHGGGSTTCS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhcCC
Confidence 4789999999999999999999999941 38999999998 99999999999999998777664
No 41
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.57 E-value=6e-16 Score=104.98 Aligned_cols=52 Identities=27% Similarity=0.529 Sum_probs=47.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCCCceecccccCCCCCcchhhhhhcccc
Q 037024 10 ANVKRGPWSAEEDSILKNYLEQFGNGGNWIALPKKAGLNRCGKSCRLRWLNYL 62 (238)
Q Consensus 10 ~~~~kg~WT~eED~~L~~~v~~~g~~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~L 62 (238)
..+.+++||+|||++|+++|.+||. .+|..||+.|+.+||+.||+.||.+++
T Consensus 5 ~p~~~~~WT~eED~~L~~~v~~~G~-~~W~~IA~~~~~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 5 SSGFDENWGADEELLLIDACETLGL-GNWADIADYVGNARTKEECRDHYLKTY 56 (58)
T ss_dssp CCSCCCCCCHHHHHHHHHHHHHTTT-TCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCc-CCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence 3467899999999999999999997 699999999977899999999999875
No 42
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.57 E-value=5.6e-16 Score=103.20 Aligned_cols=50 Identities=30% Similarity=0.567 Sum_probs=46.1
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCCCceecccccCC-CCCcchhhhhhccccC
Q 037024 13 KRGPWSAEEDSILKNYLEQFGNGGNWIALPKKAGL-NRCGKSCRLRWLNYLR 63 (238)
Q Consensus 13 ~kg~WT~eED~~L~~~v~~~g~~~~W~~Ia~~~~~-~Rt~~qcr~Rw~~~L~ 63 (238)
++++||+|||++|+++|.+||. ++|..||..++. +||+.||++||.+++.
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G~-~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k 51 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYGE-GNWSKILLHYKFNNRTSVMLKDRWRTMKK 51 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCT-TCHHHHHHHSCCSSCCHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHCc-CCHHHHHHHcCCCCCCHHHHHHHHHHHHc
Confidence 5799999999999999999997 699999999965 6999999999999874
No 43
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=99.33 E-value=2.7e-16 Score=115.71 Aligned_cols=56 Identities=25% Similarity=0.329 Sum_probs=53.1
Q ss_pred ccCCCCCCCCCCHHHHHHHHHHHHhhCCchhhhcccCCCCCHHHHHHHHHHhhchh
Q 037024 61 YLRPDIKHGGFTKEEDTIICNLYCTMGSRWSVIASQLPGRTDNDVKNYWNTKLKKN 116 (238)
Q Consensus 61 ~L~p~i~k~~WT~eED~~L~~~v~~~G~~W~~Ia~~l~gRt~~~cr~Rw~~~l~~~ 116 (238)
.++|.+++++||+|||++|+++|..||++|..||..|||||++||++||+++++..
T Consensus 9 ~~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~IA~~l~gRt~~q~k~r~~~~lrk~ 64 (89)
T 2ltp_A 9 SGRENLYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNYKKRQ 64 (89)
Confidence 56789999999999999999999999999999999999999999999999998874
No 44
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.54 E-value=9.4e-16 Score=108.44 Aligned_cols=58 Identities=21% Similarity=0.410 Sum_probs=53.9
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCCCCceecccccCCCCCcchhhhhhccccCCCCCC
Q 037024 8 DKANVKRGPWSAEEDSILKNYLEQFGNGGNWIALPKKAGLNRCGKSCRLRWLNYLRPDIKH 68 (238)
Q Consensus 8 ~k~~~~kg~WT~eED~~L~~~v~~~g~~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~L~p~i~k 68 (238)
..|.+++++||+|||++|+++|..||. +|..||..|+ +||..||+.||.++|.+.++.
T Consensus 3 ~~p~~~~~~WT~eEd~~l~~~~~~~G~--~W~~Ia~~~~-~Rt~~q~k~r~~~~l~~~~~~ 60 (72)
T 2cu7_A 3 SGSSGYSVKWTIEEKELFEQGLAKFGR--RWTKISKLIG-SRTVLQVKSYARQYFKNKVKC 60 (72)
T ss_dssp CCCSSCCCCCCHHHHHHHHHHHHHTCS--CHHHHHHHHS-SSCHHHHHHHHHHHHHHHSCS
T ss_pred CCCCcCCCCCCHHHHHHHHHHHHHHCc--CHHHHHHHcC-CCCHHHHHHHHHHHHHHHHhc
Confidence 468899999999999999999999998 9999999998 999999999999998876655
No 45
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.51 E-value=2.9e-14 Score=107.55 Aligned_cols=77 Identities=17% Similarity=0.220 Sum_probs=67.0
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhhCC-chhhhcccC----CCCCHHHHHHHHHHhhc-----hhhhcCCCChHHhHH-HHh
Q 037024 64 PDIKHGGFTKEEDTIICNLYCTMGS-RWSVIASQL----PGRTDNDVKNYWNTKLK-----KNVLAGKLSDNTQVS-VST 132 (238)
Q Consensus 64 p~i~k~~WT~eED~~L~~~v~~~G~-~W~~Ia~~l----~gRt~~~cr~Rw~~~l~-----~~~~~~~~t~~ed~~-l~~ 132 (238)
+..++++||+|||+.|+++|.+||. +|..|++.+ ++||+.+||+||+++++ +.++++.-.+++-.. ++.
T Consensus 9 ~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~~~~p~~~rg~~~P~~~l~rv~~ 88 (105)
T 2aje_A 9 QRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAKISPQQRRGEPVPQELLNRVLN 88 (105)
T ss_dssp CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTTTCCTTTTTCCSCCCHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCcccccCCCCCHHHHHHHHH
Confidence 4568899999999999999999996 999999965 89999999999999994 778888888777665 788
Q ss_pred hhHHhCCC
Q 037024 133 IPEEFGNS 140 (238)
Q Consensus 133 ~~~~~g~~ 140 (238)
++..+|+.
T Consensus 89 ~~~~~~~~ 96 (105)
T 2aje_A 89 AHGYWTQQ 96 (105)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88887754
No 46
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.50 E-value=1.2e-14 Score=109.69 Aligned_cols=85 Identities=21% Similarity=0.235 Sum_probs=67.6
Q ss_pred CCCccCCCCCCCCCCCCHHHHHHHHHHHHHhCCCCCceecccccC---CCCCcchhhhhhcccc-----CCCCCCCCCCH
Q 037024 2 GRAPCCDKANVKRGPWSAEEDSILKNYLEQFGNGGNWIALPKKAG---LNRCGKSCRLRWLNYL-----RPDIKHGGFTK 73 (238)
Q Consensus 2 g~~~~~~k~~~~kg~WT~eED~~L~~~v~~~g~~~~W~~Ia~~~~---~~Rt~~qcr~Rw~~~L-----~p~i~k~~WT~ 73 (238)
|+...-.++..++++||+|||++|+++|.+||. ++|..|++.+. .+||..+|++||++++ +|.++++.-++
T Consensus 1 ~s~~~~~~~rr~r~~WT~EEd~~L~~gV~k~G~-g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~~~~p~~~rg~~~P 79 (105)
T 2aje_A 1 GSHMLEDPQRRIRRPFSVAEVEALVQAVEKLGT-GRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAKISPQQRRGEPVP 79 (105)
T ss_dssp --------CCCCCCSCCHHHHHHHHHHHHHHCS-SSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTTTCCTTTTTCCSCC
T ss_pred CCCCccccCCCCCCCCCHHHHHHHHHHHHHhCC-CChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCcccccCCCCC
Confidence 344444567889999999999999999999998 79999999762 3999999999999998 79999998888
Q ss_pred HHHHH-HHHHHHhhC
Q 037024 74 EEDTI-ICNLYCTMG 87 (238)
Q Consensus 74 eED~~-L~~~v~~~G 87 (238)
+|-.. ++++...+|
T Consensus 80 ~~~l~rv~~~~~~~~ 94 (105)
T 2aje_A 80 QELLNRVLNAHGYWT 94 (105)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 77665 777776655
No 47
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.49 E-value=3.2e-14 Score=100.68 Aligned_cols=52 Identities=12% Similarity=0.223 Sum_probs=48.0
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhhC----CchhhhcccCCCCCHHHHHHHHHHhhch
Q 037024 64 PDIKHGGFTKEEDTIICNLYCTMG----SRWSVIASQLPGRTDNDVKNYWNTKLKK 115 (238)
Q Consensus 64 p~i~k~~WT~eED~~L~~~v~~~G----~~W~~Ia~~l~gRt~~~cr~Rw~~~l~~ 115 (238)
+.+.+++||.+||.+|++++..|| .+|..||.+|||||.+||++||..++..
T Consensus 14 ~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~d 69 (73)
T 2cqr_A 14 ARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVSG 69 (73)
T ss_dssp TTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHHHSS
T ss_pred cccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHc
Confidence 457889999999999999999999 6899999999999999999999988764
No 48
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.46 E-value=2.1e-14 Score=101.64 Aligned_cols=57 Identities=19% Similarity=0.286 Sum_probs=48.1
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhCCCCCceecccccCCCCCcchhhhhhccccCCCCCC
Q 037024 7 CDKANVKRGPWSAEEDSILKNYLEQFGNGGNWIALPKKAGLNRCGKSCRLRWLNYLRPDIKH 68 (238)
Q Consensus 7 ~~k~~~~kg~WT~eED~~L~~~v~~~g~~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~L~p~i~k 68 (238)
...|.+++++||+|||++|+++|.+||. +|..||+.| +||+.||+.||.. |....+.
T Consensus 16 ~ldP~i~k~~wT~EED~~L~~l~~~~G~--kW~~IA~~l--gRt~~q~knRw~~-L~~~~~~ 72 (73)
T 2llk_A 16 FQGDRNHVGKYTPEEIEKLKELRIKHGN--DWATIGAAL--GRSASSVKDRCRL-MKDTCNT 72 (73)
T ss_dssp ---CCCCCCSSCHHHHHHHHHHHHHHSS--CHHHHHHHH--TSCHHHHHHHHHH-CSCCCSC
T ss_pred ecCCCCCCCCCCHHHHHHHHHHHHHHCC--CHHHHHHHh--CCCHHHHHHHHHH-HHHHccC
Confidence 3579999999999999999999999998 799999999 7999999999985 4444433
No 49
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.46 E-value=1.5e-13 Score=99.62 Aligned_cols=68 Identities=19% Similarity=0.287 Sum_probs=55.9
Q ss_pred CCCCHHHHHHHHHHHHhhCC-chhhhccc----CCCCCHHHHHHHHHHhhc-----hhhhcCC-CChHHhHHHHhhhHH
Q 037024 69 GGFTKEEDTIICNLYCTMGS-RWSVIASQ----LPGRTDNDVKNYWNTKLK-----KNVLAGK-LSDNTQVSVSTIPEE 136 (238)
Q Consensus 69 ~~WT~eED~~L~~~v~~~G~-~W~~Ia~~----l~gRt~~~cr~Rw~~~l~-----~~~~~~~-~t~~ed~~l~~~~~~ 136 (238)
.+||+|||+.|+++|.+||. +|+.|++. |+|||+.+||+||+++++ +.++++. ..++....++.++..
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~~~~p~~~~~~~~p~~~~~rv~~~~a~ 79 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRVLAAHAY 79 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHHSCGGGCCSSCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhccCCcccccCCCCCHHHHHHHHHHHHH
Confidence 47999999999999999996 99999985 899999999999999984 5566554 444454667777654
No 50
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.45 E-value=4.5e-14 Score=102.33 Aligned_cols=69 Identities=19% Similarity=0.355 Sum_probs=59.5
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCCceecccc----cCCCCCcchhhhhhcccc-----CCCCCCC-CCCHHHHHHHHHHHH
Q 037024 15 GPWSAEEDSILKNYLEQFGNGGNWIALPKK----AGLNRCGKSCRLRWLNYL-----RPDIKHG-GFTKEEDTIICNLYC 84 (238)
Q Consensus 15 g~WT~eED~~L~~~v~~~g~~~~W~~Ia~~----~~~~Rt~~qcr~Rw~~~L-----~p~i~k~-~WT~eED~~L~~~v~ 84 (238)
++||+|||++|+++|++||. ++|..|++. ++ +||+.||++||.+++ +|.++++ +..++...+++.+..
T Consensus 1 r~WT~eEd~~L~~gv~k~G~-g~W~~I~~~~~~~~~-~RT~~~lKdrWrnllk~~~~~p~~~~~~~~p~~~~~rv~~~~a 78 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGT-GRWRDVKMRAFDNAD-HRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRVLAAHA 78 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCS-SCHHHHHHHHCTTCT-TSCHHHHHHHHHHHHHHHHSCGGGCCSSCCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCC-CCcHHHHHhhccccC-CCCHHHHHHHHHHHHHhccCCcccccCCCCCHHHHHHHHHHHH
Confidence 47999999999999999998 799999985 66 999999999999988 6877666 677777788887765
Q ss_pred h
Q 037024 85 T 85 (238)
Q Consensus 85 ~ 85 (238)
.
T Consensus 79 ~ 79 (83)
T 2ckx_A 79 Y 79 (83)
T ss_dssp H
T ss_pred H
Confidence 4
No 51
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.43 E-value=5.7e-14 Score=100.97 Aligned_cols=48 Identities=10% Similarity=0.198 Sum_probs=45.5
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhCCchhhhcccCCCCCHHHHHHHHHHh
Q 037024 65 DIKHGGFTKEEDTIICNLYCTMGSRWSVIASQLPGRTDNDVKNYWNTK 112 (238)
Q Consensus 65 ~i~k~~WT~eED~~L~~~v~~~G~~W~~Ia~~l~gRt~~~cr~Rw~~~ 112 (238)
...+++||+|||.+|+++|.+||.+|..||++|++||+.||++||.++
T Consensus 15 ~~~~~~WT~eEd~~Ll~~v~~~G~~W~~IA~~v~~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 15 ASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRL 62 (79)
T ss_dssp SCCSCCCCHHHHHHHHHHHHHSSSCHHHHHHHHSSCCHHHHHHHHTTS
T ss_pred cccCCCcCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHh
Confidence 456889999999999999999999999999999999999999999877
No 52
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.43 E-value=6.7e-14 Score=100.62 Aligned_cols=53 Identities=23% Similarity=0.523 Sum_probs=49.3
Q ss_pred cCCCCCCCCCCCCHHHHHHHHHHHHHhCCCCCceecccccCCCCCcchhhhhhccc
Q 037024 6 CCDKANVKRGPWSAEEDSILKNYLEQFGNGGNWIALPKKAGLNRCGKSCRLRWLNY 61 (238)
Q Consensus 6 ~~~k~~~~kg~WT~eED~~L~~~v~~~g~~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~ 61 (238)
.+.++...+++||+|||++|+++|.+||. +|..||++|+ +||..||+.||.++
T Consensus 10 ~~~~~~~~~~~WT~eEd~~Ll~~v~~~G~--~W~~IA~~v~-~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 10 AKSKGASAGREWTEQETLLLLEALEMYKD--DWNKVSEHVG-SRTQDECILHFLRL 62 (79)
T ss_dssp CCCCSSCCSCCCCHHHHHHHHHHHHHSSS--CHHHHHHHHS-SCCHHHHHHHHTTS
T ss_pred CCccccccCCCcCHHHHHHHHHHHHHhCC--CHHHHHHHcC-CCCHHHHHHHHHHh
Confidence 45677788999999999999999999994 9999999999 99999999999998
No 53
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.37 E-value=1.5e-13 Score=97.25 Aligned_cols=57 Identities=18% Similarity=0.451 Sum_probs=50.5
Q ss_pred cCCCCCCCCCCCCHHHHHHHHHHHHHhCCC--CCceecccccCCCCCcchhhhhhccccC
Q 037024 6 CCDKANVKRGPWSAEEDSILKNYLEQFGNG--GNWIALPKKAGLNRCGKSCRLRWLNYLR 63 (238)
Q Consensus 6 ~~~k~~~~kg~WT~eED~~L~~~v~~~g~~--~~W~~Ia~~~~~~Rt~~qcr~Rw~~~L~ 63 (238)
.-.++...+++||+|||++|+++|..||.. .+|..||..|+ |||..||+.||.+++.
T Consensus 10 ~~~~~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vp-GRT~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 10 RKERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVP-SKSKEDCIARYKLLVS 68 (73)
T ss_dssp CCCTTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCS-SSCHHHHHHHHHHHHS
T ss_pred cccccccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 346788899999999999999999999931 38999999998 9999999999998764
No 54
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=99.06 E-value=5.3e-14 Score=103.42 Aligned_cols=55 Identities=25% Similarity=0.510 Sum_probs=51.3
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhCCCCCceecccccCCCCCcchhhhhhccccCC
Q 037024 7 CDKANVKRGPWSAEEDSILKNYLEQFGNGGNWIALPKKAGLNRCGKSCRLRWLNYLRP 64 (238)
Q Consensus 7 ~~k~~~~kg~WT~eED~~L~~~v~~~g~~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~L~p 64 (238)
..-|.+.+++||+|||++|+++|..||. +|..||..|+ +||..||+.||.++|..
T Consensus 9 ~~~p~~~~~~WT~eEd~~l~~~~~~~G~--~W~~IA~~l~-gRt~~q~k~r~~~~lrk 63 (89)
T 2ltp_A 9 SGRENLYFQGWTEEEMGTAKKGLLEHGR--NWSAIARMVG-SKTVSQCKNFYFNYKKR 63 (89)
Confidence 4578999999999999999999999998 8999999998 99999999999998863
No 55
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.33 E-value=1.7e-12 Score=88.20 Aligned_cols=50 Identities=26% Similarity=0.364 Sum_probs=46.4
Q ss_pred CCCCCCCHHHHHHHHHHHHhhCCchhhhc---ccCCCCCHHHHHHHHHHhhch
Q 037024 66 IKHGGFTKEEDTIICNLYCTMGSRWSVIA---SQLPGRTDNDVKNYWNTKLKK 115 (238)
Q Consensus 66 i~k~~WT~eED~~L~~~v~~~G~~W~~Ia---~~l~gRt~~~cr~Rw~~~l~~ 115 (238)
-++.+||+|||+.|++.|++||.+|..|+ ..+++||..++++||+++.+.
T Consensus 6 ~~r~~WT~EE~~~L~~gV~k~G~~W~~I~~~y~f~~~RT~VdLKdk~r~L~k~ 58 (62)
T 1x58_A 6 SGRKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRLISG 58 (62)
T ss_dssp CCSSSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHHHHTC
T ss_pred CCCCCCCHHHHHHHHHHHHHHhHhHHHHHHhCCCccCcccchHHHHHHHHHhc
Confidence 36789999999999999999999999999 678899999999999998875
No 56
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=99.26 E-value=3.7e-12 Score=94.10 Aligned_cols=49 Identities=18% Similarity=0.389 Sum_probs=44.6
Q ss_pred CCCCCCHHHHHHHHHHHHhhC----CchhhhcccCCCCCHHHHHHHHHHhhch
Q 037024 67 KHGGFTKEEDTIICNLYCTMG----SRWSVIASQLPGRTDNDVKNYWNTKLKK 115 (238)
Q Consensus 67 ~k~~WT~eED~~L~~~v~~~G----~~W~~Ia~~l~gRt~~~cr~Rw~~~l~~ 115 (238)
.+++||.|||.+|++++..|| ++|..||..|||||.++|++||..++..
T Consensus 7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~~d 59 (93)
T 2cjj_A 7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVED 59 (93)
T ss_dssp -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 467999999999999999996 6799999999999999999999988754
No 57
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.06 E-value=1.9e-10 Score=78.47 Aligned_cols=48 Identities=21% Similarity=0.233 Sum_probs=44.1
Q ss_pred CCCCCCHHHHHHHHHHHHhhCCchhhhcccCCCCCHHHHHHHHHHhhc
Q 037024 67 KHGGFTKEEDTIICNLYCTMGSRWSVIASQLPGRTDNDVKNYWNTKLK 114 (238)
Q Consensus 67 ~k~~WT~eED~~L~~~v~~~G~~W~~Ia~~l~gRt~~~cr~Rw~~~l~ 114 (238)
..++||++|+.++++++..||.+|..||..||+||..+|..+|+...+
T Consensus 11 ~~~~WT~eE~~~F~~~~~~~gk~w~~Ia~~l~~rt~~~~v~~Yy~~Kk 58 (61)
T 2eqr_A 11 FMNVWTDHEKEIFKDKFIQHPKNFGLIASYLERKSVPDCVLYYYLTKK 58 (61)
T ss_dssp CCCSCCHHHHHHHHHHHHHSTTCHHHHHHHCTTSCHHHHHHHHHHHTC
T ss_pred cCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHhcC
Confidence 457999999999999999999999999999999999999999986544
No 58
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=99.04 E-value=3.1e-11 Score=89.14 Aligned_cols=49 Identities=16% Similarity=0.435 Sum_probs=43.4
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCC--CCceecccccCCCCCcchhhhhhcccc
Q 037024 13 KRGPWSAEEDSILKNYLEQFGNG--GNWIALPKKAGLNRCGKSCRLRWLNYL 62 (238)
Q Consensus 13 ~kg~WT~eED~~L~~~v~~~g~~--~~W~~Ia~~~~~~Rt~~qcr~Rw~~~L 62 (238)
.+++||+|||++|.+++..||.. ..|..||..|+ |||..||+.||.+++
T Consensus 7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vp-GRT~~q~k~ry~~l~ 57 (93)
T 2cjj_A 7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVE-GRTPEEVKKHYEILV 57 (93)
T ss_dssp -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHST-TCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 46789999999999999999741 47999999998 999999999999864
No 59
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=99.00 E-value=2.7e-10 Score=83.73 Aligned_cols=65 Identities=20% Similarity=0.226 Sum_probs=57.8
Q ss_pred chhhhhhccccCCCCCCCCCCHHHHHHHHHHHHhhCCchhhhcccC-----CCCCHHHHHHHHHHhhchhhhcC
Q 037024 52 KSCRLRWLNYLRPDIKHGGFTKEEDTIICNLYCTMGSRWSVIASQL-----PGRTDNDVKNYWNTKLKKNVLAG 120 (238)
Q Consensus 52 ~qcr~Rw~~~L~p~i~k~~WT~eED~~L~~~v~~~G~~W~~Ia~~l-----~gRt~~~cr~Rw~~~l~~~~~~~ 120 (238)
.=+.++|.++|.+ .+||.||+..|++|+++||.+|..|+..+ ++||..++|+||+.+.+..+...
T Consensus 18 ~yt~eeY~~~L~~----~~WTkEETd~Lf~L~~~fdlRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~l~~~r 87 (93)
T 3hm5_A 18 VYSEQEYQLYLHD----DAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVR 87 (93)
T ss_dssp CCCHHHHHHHTCB----TTBCHHHHHHHHHHHHHTTTCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred ccCHHHHHHHcCC----CCCCHHHHHHHHHHHHHhCCCeeeehhhhccCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 3467899999976 89999999999999999999999999988 58999999999999888766543
No 60
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=98.92 E-value=4.1e-10 Score=76.45 Aligned_cols=49 Identities=16% Similarity=0.259 Sum_probs=43.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCCceecc---cccCCCCCcchhhhhhccccC
Q 037024 12 VKRGPWSAEEDSILKNYLEQFGNGGNWIALP---KKAGLNRCGKSCRLRWLNYLR 63 (238)
Q Consensus 12 ~~kg~WT~eED~~L~~~v~~~g~~~~W~~Ia---~~~~~~Rt~~qcr~Rw~~~L~ 63 (238)
..+++||+|||+.|++.|++||. +|..|+ ..+. +||...+.+||+++..
T Consensus 6 ~~r~~WT~EE~~~L~~gV~k~G~--~W~~I~~~y~f~~-~RT~VdLKdk~r~L~k 57 (62)
T 1x58_A 6 SGRKDFTKEEVNYLFHGVKTMGN--HWNSILWSFPFQK-GRRAVDLAHKYHRLIS 57 (62)
T ss_dssp CCSSSCCHHHHHHHHHHHHHHCS--CHHHHHHHSCCCT-TCCHHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHHHhH--hHHHHHHhCCCcc-CcccchHHHHHHHHHh
Confidence 37889999999999999999997 999999 4555 9999999999998764
No 61
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.88 E-value=1.5e-09 Score=76.35 Aligned_cols=50 Identities=22% Similarity=0.297 Sum_probs=44.9
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhC----CchhhhcccCCCCCHHHHHHHHHHhhch
Q 037024 65 DIKHGGFTKEEDTIICNLYCTMG----SRWSVIASQLPGRTDNDVKNYWNTKLKK 115 (238)
Q Consensus 65 ~i~k~~WT~eED~~L~~~v~~~G----~~W~~Ia~~l~gRt~~~cr~Rw~~~l~~ 115 (238)
....+.||.|||.+|.+++..|+ .+|..||.++ |||..+|+.||..+...
T Consensus 5 ~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~L~~d 58 (72)
T 2cqq_A 5 SSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKDS 58 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHHS
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHHHHHh
Confidence 45678999999999999999997 5799999998 99999999999987655
No 62
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.84 E-value=1.5e-09 Score=73.95 Aligned_cols=51 Identities=16% Similarity=0.220 Sum_probs=45.3
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCCCCceecccccCCCCCcchhhhhhccc
Q 037024 8 DKANVKRGPWSAEEDSILKNYLEQFGNGGNWIALPKKAGLNRCGKSCRLRWLNY 61 (238)
Q Consensus 8 ~k~~~~kg~WT~eED~~L~~~v~~~g~~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~ 61 (238)
.+.....++||+||++++.+++..||. +|..||..|+ +||..||..+|...
T Consensus 6 ~~~r~~~~~WT~eE~~~F~~~~~~~gk--~w~~Ia~~l~-~rt~~~~v~~Yy~~ 56 (61)
T 2eqr_A 6 SGDRQFMNVWTDHEKEIFKDKFIQHPK--NFGLIASYLE-RKSVPDCVLYYYLT 56 (61)
T ss_dssp CCCCSCCCSCCHHHHHHHHHHHHHSTT--CHHHHHHHCT-TSCHHHHHHHHHHH
T ss_pred ccccccCCCCCHHHHHHHHHHHHHhCC--CHHHHHHHcC-CCCHHHHHHHHHHh
Confidence 444557789999999999999999996 9999999998 99999999998653
No 63
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.76 E-value=7.7e-09 Score=87.07 Aligned_cols=49 Identities=16% Similarity=0.298 Sum_probs=45.9
Q ss_pred CCCCCCHHHHHHHHHHHHhhCCchhhhcccCCCCCHHHHHHHHHHhhch
Q 037024 67 KHGGFTKEEDTIICNLYCTMGSRWSVIASQLPGRTDNDVKNYWNTKLKK 115 (238)
Q Consensus 67 ~k~~WT~eED~~L~~~v~~~G~~W~~Ia~~l~gRt~~~cr~Rw~~~l~~ 115 (238)
...+||+||+.++++++..||.+|..||+.+++||..||+++|+++.++
T Consensus 132 ~s~~WTeEE~~lFleAl~kYGKDW~~IAk~VgTKT~~QcKnfY~~~kKR 180 (235)
T 2iw5_B 132 CNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR 180 (235)
T ss_dssp CCSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred cCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 4569999999999999999999999999999999999999999987765
No 64
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=98.69 E-value=1.6e-08 Score=68.35 Aligned_cols=47 Identities=19% Similarity=0.350 Sum_probs=42.5
Q ss_pred CCCCCHHHHHHHHHHHHhh--------CCc-hhhhcc-cCCCCCHHHHHHHHHHhhc
Q 037024 68 HGGFTKEEDTIICNLYCTM--------GSR-WSVIAS-QLPGRTDNDVKNYWNTKLK 114 (238)
Q Consensus 68 k~~WT~eED~~L~~~v~~~--------G~~-W~~Ia~-~l~gRt~~~cr~Rw~~~l~ 114 (238)
+.+||+|||..|++.|.++ |+. |..+++ .+|++|-.+||+||.+.|+
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l~ 58 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR 58 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHcc
Confidence 5689999999999999999 443 999999 8999999999999998775
No 65
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.67 E-value=2.7e-08 Score=69.88 Aligned_cols=49 Identities=10% Similarity=0.258 Sum_probs=43.8
Q ss_pred CCCCCCHHHHHHHHHHHHhhC----CchhhhcccCCCCCHHHHHHHHHHhhch
Q 037024 67 KHGGFTKEEDTIICNLYCTMG----SRWSVIASQLPGRTDNDVKNYWNTKLKK 115 (238)
Q Consensus 67 ~k~~WT~eED~~L~~~v~~~G----~~W~~Ia~~l~gRt~~~cr~Rw~~~l~~ 115 (238)
....||.+|+.+|.+++..|+ .+|..||..+||||..+|+.||..+++.
T Consensus 7 ~~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~~~ 59 (73)
T 1wgx_A 7 GDKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPRG 59 (73)
T ss_dssp SSSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSSS
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHHHhc
Confidence 346899999999999999997 4699999999999999999999977554
No 66
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.59 E-value=8.8e-09 Score=72.43 Aligned_cols=50 Identities=16% Similarity=0.280 Sum_probs=43.3
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCC--CCCceecccccCCCCCcchhhhhhcccc
Q 037024 11 NVKRGPWSAEEDSILKNYLEQFGN--GGNWIALPKKAGLNRCGKSCRLRWLNYL 62 (238)
Q Consensus 11 ~~~kg~WT~eED~~L~~~v~~~g~--~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~L 62 (238)
..+.+.||.|||++|.+++.+|+. ...|..||..+ |||..||+.||..+.
T Consensus 5 ~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l--gRt~~eV~~~y~~L~ 56 (72)
T 2cqq_A 5 SSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL--GRSVTDVTTKAKQLK 56 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH--TSCHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh--CCCHHHHHHHHHHHH
Confidence 446789999999999999999973 24799999997 599999999998664
No 67
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=98.56 E-value=3.5e-08 Score=91.86 Aligned_cols=47 Identities=17% Similarity=0.322 Sum_probs=43.1
Q ss_pred CCCCHHHHHHHHHHHHhhCCchhhhcccCCCCCHHHHHHHHHHhhch
Q 037024 69 GGFTKEEDTIICNLYCTMGSRWSVIASQLPGRTDNDVKNYWNTKLKK 115 (238)
Q Consensus 69 ~~WT~eED~~L~~~v~~~G~~W~~Ia~~l~gRt~~~cr~Rw~~~l~~ 115 (238)
..||.+|-.++++++.+||.+|..||..++.||..|||++|.++.+.
T Consensus 381 ~~WT~eE~~~f~~al~~yGkdw~~IA~~VgTKT~~Qvk~fy~~~kkr 427 (482)
T 2xag_B 381 ARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR 427 (482)
T ss_dssp SCCCHHHHHHHHHHHHHHTTCHHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred CCCCHHHHHHHHHHHHHHCcCHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 48999999999999999999999999999999999999999765443
No 68
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=98.52 E-value=2.1e-08 Score=67.79 Aligned_cols=48 Identities=27% Similarity=0.457 Sum_probs=42.9
Q ss_pred CCCCCHHHHHHHHHHHHHh--------CCCCCceeccc-ccCCCCCcchhhhhhccccC
Q 037024 14 RGPWSAEEDSILKNYLEQF--------GNGGNWIALPK-KAGLNRCGKSCRLRWLNYLR 63 (238)
Q Consensus 14 kg~WT~eED~~L~~~v~~~--------g~~~~W~~Ia~-~~~~~Rt~~qcr~Rw~~~L~ 63 (238)
|.+||+|||++|+++|.+| |. .-|..+++ .++ ++|-.+||+||.++|.
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn-~iwk~la~~~~~-~HtwqSwRdRy~k~l~ 58 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGN-ALWKAMEKSSLT-QHSWQSLKDRYLKHLR 58 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSS-HHHHHHHHSCSS-SCCSHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccH-HHHHHHHHhHCC-CCCHHHHHHHHHHHcc
Confidence 5689999999999999999 54 47999999 676 9999999999999874
No 69
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.50 E-value=2.8e-08 Score=69.85 Aligned_cols=49 Identities=18% Similarity=0.451 Sum_probs=43.5
Q ss_pred CCCCCHHHHHHHHHHHHHhCC--CCCceecccccCCCCCcchhhhhhccccC
Q 037024 14 RGPWSAEEDSILKNYLEQFGN--GGNWIALPKKAGLNRCGKSCRLRWLNYLR 63 (238)
Q Consensus 14 kg~WT~eED~~L~~~v~~~g~--~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~L~ 63 (238)
...||.+|+++|.+++..|+. ...|..||..|+ +||..+|+.||..++.
T Consensus 8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~-gKT~eE~~~hY~~l~~ 58 (73)
T 1wgx_A 8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVG-SRSPEECQRKYMENPR 58 (73)
T ss_dssp SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTT-TSCHHHHHHHHHHSSS
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcC-CCCHHHHHHHHHHHHh
Confidence 457999999999999999964 257999999999 9999999999998764
No 70
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.35 E-value=1.7e-07 Score=78.96 Aligned_cols=51 Identities=20% Similarity=0.423 Sum_probs=46.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCCCceecccccCCCCCcchhhhhhccccC
Q 037024 10 ANVKRGPWSAEEDSILKNYLEQFGNGGNWIALPKKAGLNRCGKSCRLRWLNYLR 63 (238)
Q Consensus 10 ~~~~kg~WT~eED~~L~~~v~~~g~~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~L~ 63 (238)
......+||.||++++++++.+||. +|..||+.|+ +||..||+.+|.++..
T Consensus 129 ~~k~s~~WTeEE~~lFleAl~kYGK--DW~~IAk~Vg-TKT~~QcKnfY~~~kK 179 (235)
T 2iw5_B 129 IQKCNARWTTEEQLLAVQAIRKYGR--DFQAISDVIG-NKSVVQVKNFFVNYRR 179 (235)
T ss_dssp CCCCCSSCCHHHHHHHHHHHHHHSS--CHHHHHHHHS-SCCHHHHHHHHHHTTT
T ss_pred CCccCCCCCHHHHHHHHHHHHHHCc--CHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 3346779999999999999999997 9999999999 9999999999988764
No 71
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=98.25 E-value=3.3e-07 Score=64.00 Aligned_cols=43 Identities=21% Similarity=0.329 Sum_probs=38.4
Q ss_pred CCCCCHHHHHHHHHHHHhhCC----chhhhcccCCCCCHHHHHHHHH
Q 037024 68 HGGFTKEEDTIICNLYCTMGS----RWSVIASQLPGRTDNDVKNYWN 110 (238)
Q Consensus 68 k~~WT~eED~~L~~~v~~~G~----~W~~Ia~~l~gRt~~~cr~Rw~ 110 (238)
..+||.+|+.+|.+++..|+. +|.+||..+||||..+|+.+|.
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~ 66 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYE 66 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence 458999999999999999983 7999999999999999999884
No 72
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=98.24 E-value=7.8e-07 Score=64.33 Aligned_cols=46 Identities=26% Similarity=0.412 Sum_probs=42.4
Q ss_pred CCCHHHHHHHHHHHHhhCC---chhhhcccCCCCCHHHHHHHHHHhhch
Q 037024 70 GFTKEEDTIICNLYCTMGS---RWSVIASQLPGRTDNDVKNYWNTKLKK 115 (238)
Q Consensus 70 ~WT~eED~~L~~~v~~~G~---~W~~Ia~~l~gRt~~~cr~Rw~~~l~~ 115 (238)
.||.|||..|+...++-|. .|..||+.|.+|+++|+++||+.+++=
T Consensus 35 lWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~Lm~L 83 (95)
T 1ug2_A 35 LWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQL 83 (95)
T ss_dssp SSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHHH
T ss_pred EeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHHHHH
Confidence 6999999999999999996 799999999999999999999877653
No 73
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.19 E-value=3.3e-06 Score=57.63 Aligned_cols=50 Identities=12% Similarity=0.149 Sum_probs=45.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhhCCchhhhcc-cCCCCCHHHHHHHHHHh
Q 037024 63 RPDIKHGGFTKEEDTIICNLYCTMGSRWSVIAS-QLPGRTDNDVKNYWNTK 112 (238)
Q Consensus 63 ~p~i~k~~WT~eED~~L~~~v~~~G~~W~~Ia~-~l~gRt~~~cr~Rw~~~ 112 (238)
.|.+....||++|-.+..+.+..||.+|..|++ .||+||..+|...|+..
T Consensus 4 ~p~~~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~w 54 (63)
T 2yqk_A 4 GSSGIEKCWTEDEVKRFVKGLRQYGKNFFRIRKELLPNKETGELITFYYYW 54 (63)
T ss_dssp CCCCCCCSCCHHHHHHHHHHHHHTCSCHHHHHHHSCTTSCHHHHHHHHHHH
T ss_pred CCCcCCCCcCHHHHHHHHHHHHHhCccHHHHHHHHcCCCcHHHHHHHHhcc
Confidence 367788899999999999999999999999998 69999999999888643
No 74
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=98.14 E-value=5.1e-07 Score=63.00 Aligned_cols=45 Identities=13% Similarity=0.281 Sum_probs=39.3
Q ss_pred CCCCCHHHHHHHHHHHHHhCC--CCCceecccccCCCCCcchhhhhhc
Q 037024 14 RGPWSAEEDSILKNYLEQFGN--GGNWIALPKKAGLNRCGKSCRLRWL 59 (238)
Q Consensus 14 kg~WT~eED~~L~~~v~~~g~--~~~W~~Ia~~~~~~Rt~~qcr~Rw~ 59 (238)
...||.+|+++|.+++..|+. ...|.+||..|| |||..+|+.+|.
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~Vp-GKT~eEVk~hY~ 66 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVK-GRTPEEVKKHYE 66 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSC-SSCHHHHHGGGC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcC-CCCHHHHHHHHH
Confidence 467999999999999999954 358999999999 999999999985
No 75
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=97.44 E-value=2.8e-07 Score=63.15 Aligned_cols=44 Identities=20% Similarity=0.366 Sum_probs=41.1
Q ss_pred CCCHHHHHHHHHHHHhhCC---chhhhcccCCCCCHHHHHHHHHHhhc
Q 037024 70 GFTKEEDTIICNLYCTMGS---RWSVIASQLPGRTDNDVKNYWNTKLK 114 (238)
Q Consensus 70 ~WT~eED~~L~~~v~~~G~---~W~~Ia~~l~gRt~~~cr~Rw~~~l~ 114 (238)
.||.|||..|+..+++-|. .|..||..| +|+++||.+||..+++
T Consensus 16 lWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~RF~~Lm~ 62 (70)
T 2lr8_A 16 LWTRNDDRVILLECQKRGPSSKTFAYLAAKL-DKNPNQVSERFQQLMK 62 (70)
Confidence 6999999999999999996 799999999 9999999999997765
No 76
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=98.09 E-value=6.8e-06 Score=72.51 Aligned_cols=99 Identities=14% Similarity=0.216 Sum_probs=79.6
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCCceecccccCCCCCcchhhh-------hhccc--------------------------
Q 037024 15 GPWSAEEDSILKNYLEQFGNGGNWIALPKKAGLNRCGKSCRL-------RWLNY-------------------------- 61 (238)
Q Consensus 15 g~WT~eED~~L~~~v~~~g~~~~W~~Ia~~~~~~Rt~~qcr~-------Rw~~~-------------------------- 61 (238)
+.||..+...++.++.+||. .+|..||..|+ ++|...++. ||..+
T Consensus 111 ~~W~rrdf~~Fi~a~~kyGr-~~~~~IA~ev~-~Kt~eEV~~Y~~vFw~ry~ei~d~ek~~~~IE~gE~ki~r~~~~~~~ 188 (304)
T 1ofc_X 111 TAWTKRDFNQFIKANEKYGR-DDIDNIAKDVE-GKTPEEVIEYNAVFWERCTELQDIERIMGQIERGEGKIQRRLSIKKA 188 (304)
T ss_dssp TTCCHHHHHHHHHHHHHHCT-TCHHHHTTSST-TCCHHHHHHHHHHHHHHGGGCTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCH-HHHHHHHHHhc-CCCHHHHHHHHHHHHHhHHHhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46999999999999999998 69999999998 899888752 22110
Q ss_pred -----------------cCCCCCCCCCCHHHHHHHHHHHHhhCC----chhhhcc------------cCCCCCHHHHHHH
Q 037024 62 -----------------LRPDIKHGGFTKEEDTIICNLYCTMGS----RWSVIAS------------QLPGRTDNDVKNY 108 (238)
Q Consensus 62 -----------------L~p~i~k~~WT~eED~~L~~~v~~~G~----~W~~Ia~------------~l~gRt~~~cr~R 108 (238)
..+..+...||++||..|+-++.+||- .|..|.. ++..||+.++..|
T Consensus 189 l~~Ki~~~~~P~~~L~i~y~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rR 268 (304)
T 1ofc_X 189 LDQKMSRYRAPFHQLRLQYGNNKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRR 268 (304)
T ss_dssp HHHHHHTCSSHHHHCCCCCTTCCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHH
T ss_pred HHHHHHHhcCcHHHhccccCCCCCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHH
Confidence 012224468999999999999999994 6999962 3457999999999
Q ss_pred HHHhhch
Q 037024 109 WNTKLKK 115 (238)
Q Consensus 109 w~~~l~~ 115 (238)
..++++-
T Consensus 269 c~tLi~~ 275 (304)
T 1ofc_X 269 CNTLITL 275 (304)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998875
No 77
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=97.87 E-value=1.9e-05 Score=57.74 Aligned_cols=61 Identities=21% Similarity=0.263 Sum_probs=50.5
Q ss_pred hhhccccCCCCCCCCCCHHHHHHHHHHHHhhCCchhhhcccC-----CCCCHHHHHHHHHHhhchhhhcC
Q 037024 56 LRWLNYLRPDIKHGGFTKEEDTIICNLYCTMGSRWSVIASQL-----PGRTDNDVKNYWNTKLKKNVLAG 120 (238)
Q Consensus 56 ~Rw~~~L~p~i~k~~WT~eED~~L~~~v~~~G~~W~~Ia~~l-----~gRt~~~cr~Rw~~~l~~~~~~~ 120 (238)
+.|..+|. ...||.||...|++|+++|+-+|..|+... +.||..++|.||+.+.+..+...
T Consensus 22 eEY~~~L~----~~~WT~eETd~LfdLc~~fdlRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~~~r 87 (93)
T 4iej_A 22 QEYQLYLH----DDAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVR 87 (93)
T ss_dssp HHHHHHTC----BTTBCHHHHHHHHHHHHHTTTCHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhC----CCCCCHHHHHHHHHHHHHcCCCeEEEeeccccCCCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 34555554 368999999999999999999999999776 37999999999999888766543
No 78
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.86 E-value=9.7e-06 Score=55.23 Aligned_cols=49 Identities=16% Similarity=0.212 Sum_probs=44.0
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCCCCceeccc-ccCCCCCcchhhhhhc
Q 037024 8 DKANVKRGPWSAEEDSILKNYLEQFGNGGNWIALPK-KAGLNRCGKSCRLRWL 59 (238)
Q Consensus 8 ~k~~~~kg~WT~eED~~L~~~v~~~g~~~~W~~Ia~-~~~~~Rt~~qcr~Rw~ 59 (238)
..|.+....||+||-++..+++.+||. +|..|++ .++ +|+..||..-|.
T Consensus 3 ~~p~~~~~~WT~eE~~~Fe~~l~~yGK--df~~I~~~~v~-~Kt~~~~v~fYY 52 (63)
T 2yqk_A 3 SGSSGIEKCWTEDEVKRFVKGLRQYGK--NFFRIRKELLP-NKETGELITFYY 52 (63)
T ss_dssp CCCCCCCCSCCHHHHHHHHHHHHHTCS--CHHHHHHHSCT-TSCHHHHHHHHH
T ss_pred CCCCcCCCCcCHHHHHHHHHHHHHhCc--cHHHHHHHHcC-CCcHHHHHHHHh
Confidence 467788899999999999999999997 9999998 587 999999987664
No 79
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=97.73 E-value=4.5e-05 Score=56.04 Aligned_cols=45 Identities=16% Similarity=0.223 Sum_probs=41.7
Q ss_pred CCCCCHHHHHHHHHHHHhhCCchhhhcccCCCCCHHHHHHHHHHh
Q 037024 68 HGGFTKEEDTIICNLYCTMGSRWSVIASQLPGRTDNDVKNYWNTK 112 (238)
Q Consensus 68 k~~WT~eED~~L~~~v~~~G~~W~~Ia~~l~gRt~~~cr~Rw~~~ 112 (238)
...||++|.++..+.+..||.+|..||..||+||..+|-..|+..
T Consensus 43 ~~~WT~eE~~~F~~~~~~~gK~F~~Ia~~l~~Kt~~~cV~~YY~~ 87 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYLT 87 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHSTTCHHHHHHTCTTCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHHhcc
Confidence 468999999999999999999999999999999999999988643
No 80
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.69 E-value=6.5e-05 Score=52.17 Aligned_cols=44 Identities=14% Similarity=0.243 Sum_probs=40.7
Q ss_pred CCCCCHHHHHHHHHHHHhhCCchhhhcc-cCCCCCHHHHHHHHHH
Q 037024 68 HGGFTKEEDTIICNLYCTMGSRWSVIAS-QLPGRTDNDVKNYWNT 111 (238)
Q Consensus 68 k~~WT~eED~~L~~~v~~~G~~W~~Ia~-~l~gRt~~~cr~Rw~~ 111 (238)
...||++|-.+..+.+..||.+|..|++ .||+||..+|...|+.
T Consensus 8 ~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~ 52 (70)
T 2crg_A 8 MEEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYYM 52 (70)
T ss_dssp SCCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCccHHHHHHHHcCCCCHHHHHHHHHh
Confidence 4589999999999999999999999999 5999999999998873
No 81
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=97.62 E-value=1.7e-05 Score=58.11 Aligned_cols=48 Identities=13% Similarity=0.298 Sum_probs=42.5
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCCCceecccccC----CCCCcchhhhhhcccc
Q 037024 13 KRGPWSAEEDSILKNYLEQFGNGGNWIALPKKAG----LNRCGKSCRLRWLNYL 62 (238)
Q Consensus 13 ~kg~WT~eED~~L~~~v~~~g~~~~W~~Ia~~~~----~~Rt~~qcr~Rw~~~L 62 (238)
...+||.||+..|++++++||. .|..|+..+. .+||..+++.||..+.
T Consensus 29 ~~~~WTkEETd~Lf~L~~~fdl--RW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~ 80 (93)
T 3hm5_A 29 HDDAWTKAETDHLFDLSRRFDL--RFVVIHDRYDHQQFKKRSVEDLKERYYHIC 80 (93)
T ss_dssp CBTTBCHHHHHHHHHHHHHTTT--CHHHHHHHSCTTTSCCCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCC--CeeeehhhhccCCCCCCCHHHHHHHHHHHH
Confidence 3489999999999999999997 9999999883 3799999999998654
No 82
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=97.52 E-value=3.4e-05 Score=71.80 Aligned_cols=48 Identities=19% Similarity=0.438 Sum_probs=43.8
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCCceecccccCCCCCcchhhhhhccc
Q 037024 11 NVKRGPWSAEEDSILKNYLEQFGNGGNWIALPKKAGLNRCGKSCRLRWLNY 61 (238)
Q Consensus 11 ~~~kg~WT~eED~~L~~~v~~~g~~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~ 61 (238)
.....+||.||-+++++++.+||. +|..||..|+ +||..||+..|.++
T Consensus 377 ~~~~~~WT~eE~~~f~~al~~yGk--dw~~IA~~Vg-TKT~~Qvk~fy~~~ 424 (482)
T 2xag_B 377 QKCNARWTTEEQLLAVQAIRKYGR--DFQAISDVIG-NKSVVQVKNFFVNY 424 (482)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHTT--CHHHHHHHHS-SCCHHHHHHHHHHT
T ss_pred cccCCCCCHHHHHHHHHHHHHHCc--CHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 345789999999999999999997 9999999999 99999999988764
No 83
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.36 E-value=7.3e-05 Score=54.03 Aligned_cols=51 Identities=16% Similarity=0.305 Sum_probs=44.0
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCC-CCCceecccccCCCCCcchhhhhhccc
Q 037024 10 ANVKRGPWSAEEDSILKNYLEQFGN-GGNWIALPKKAGLNRCGKSCRLRWLNY 61 (238)
Q Consensus 10 ~~~~kg~WT~eED~~L~~~v~~~g~-~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~ 61 (238)
++-+--.||.|||..|+...++-|. ...|..||+.++ +|++.|+.+|++.+
T Consensus 29 ~Ge~VvlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~-Nks~nqV~~RFq~L 80 (95)
T 1ug2_A 29 TGEKVVLWTREADRVILTMCQEQGAQPHTFSVISQQLG-NKTPVEVSHRFREL 80 (95)
T ss_dssp CCCCCSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHS-SCCHHHHHHHHHHH
T ss_pred CCCEEEEeccccCHHHHHHHHhcCCChhHHHHHHHHHc-cCCHHHHHHHHHHH
Confidence 3445557999999999999999986 458999999998 99999999999764
No 84
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=97.34 E-value=0.00011 Score=52.73 Aligned_cols=50 Identities=18% Similarity=0.365 Sum_probs=41.6
Q ss_pred CCCCCCHHHHHHHHHHHHhhC----------CchhhhcccCC----CCCHHHHHHHHHHhhchh
Q 037024 67 KHGGFTKEEDTIICNLYCTMG----------SRWSVIASQLP----GRTDNDVKNYWNTKLKKN 116 (238)
Q Consensus 67 ~k~~WT~eED~~L~~~v~~~G----------~~W~~Ia~~l~----gRt~~~cr~Rw~~~l~~~ 116 (238)
+...||.+|-..||+++..+. ..|..||..|. .||+.||+.+|.++.+..
T Consensus 3 R~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~Y 66 (86)
T 2ebi_A 3 RAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKEF 66 (86)
T ss_dssp CSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Confidence 346899999999999997632 14999999873 699999999999888764
No 85
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=97.29 E-value=9.6e-05 Score=54.28 Aligned_cols=43 Identities=16% Similarity=0.295 Sum_probs=39.5
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCCceecccccCCCCCcchhhhhhc
Q 037024 14 RGPWSAEEDSILKNYLEQFGNGGNWIALPKKAGLNRCGKSCRLRWL 59 (238)
Q Consensus 14 kg~WT~eED~~L~~~v~~~g~~~~W~~Ia~~~~~~Rt~~qcr~Rw~ 59 (238)
...||+||.++..+++..||. +|..||..++ +||..+|..-|.
T Consensus 43 ~~~WT~eE~~~F~~~~~~~gK--~F~~Ia~~l~-~Kt~~~cV~~YY 85 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQHPK--NFGLIASFLE-RKTVAECVLYYY 85 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHSTT--CHHHHHHTCT-TCCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCC--CHHHHHHHcC-CCCHHHHHHHHh
Confidence 467999999999999999997 9999999998 999999988764
No 86
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.21 E-value=0.00015 Score=50.30 Aligned_cols=44 Identities=18% Similarity=0.287 Sum_probs=39.7
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCCCceeccc-ccCCCCCcchhhhhhc
Q 037024 13 KRGPWSAEEDSILKNYLEQFGNGGNWIALPK-KAGLNRCGKSCRLRWL 59 (238)
Q Consensus 13 ~kg~WT~eED~~L~~~v~~~g~~~~W~~Ia~-~~~~~Rt~~qcr~Rw~ 59 (238)
....||+||-++..+++..||. +|..|+. .++ +|+..+|..-|.
T Consensus 7 ~~~~WT~eE~~~Fe~~l~~yGK--df~~I~~~~v~-~Kt~~~~v~fYY 51 (70)
T 2crg_A 7 GMEEWSASEACLFEEALEKYGK--DFNDIRQDFLP-WKSLTSIIEYYY 51 (70)
T ss_dssp SSCCCCHHHHHHHHHHHHHTCS--CHHHHHHTTCS-SSCHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCc--cHHHHHHHHcC-CCCHHHHHHHHH
Confidence 5568999999999999999997 9999999 587 999999988765
No 87
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=96.23 E-value=6.3e-05 Score=51.49 Aligned_cols=51 Identities=12% Similarity=0.207 Sum_probs=43.3
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCC-CCCceecccccCCCCCcchhhhhhccccC
Q 037024 11 NVKRGPWSAEEDSILKNYLEQFGN-GGNWIALPKKAGLNRCGKSCRLRWLNYLR 63 (238)
Q Consensus 11 ~~~kg~WT~eED~~L~~~v~~~g~-~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~L~ 63 (238)
+-.--.||.|||..|+..+++-|. ...|..||+.+ +|++.|+..||..++.
T Consensus 11 ge~vvlWTReeDR~IL~~cq~~G~s~~tfa~iA~~L--nks~~QV~~RF~~Lm~ 62 (70)
T 2lr8_A 11 GEIIILWTRNDDRVILLECQKRGPSSKTFAYLAAKL--DKNPNQVSERFQQLMK 62 (70)
Confidence 444557999999999999999886 35899999888 6999999999987653
No 88
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=96.89 E-value=0.00089 Score=55.58 Aligned_cols=103 Identities=16% Similarity=0.156 Sum_probs=67.7
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCC-CCCceecccc--cCCCCCcchhhh-------hhcc---------------------
Q 037024 12 VKRGPWSAEEDSILKNYLEQFGN-GGNWIALPKK--AGLNRCGKSCRL-------RWLN--------------------- 60 (238)
Q Consensus 12 ~~kg~WT~eED~~L~~~v~~~g~-~~~W~~Ia~~--~~~~Rt~~qcr~-------Rw~~--------------------- 60 (238)
-....||..|-..|+.++.+||. ...|..|+.. +. +++...+.. ++..
T Consensus 5 ~~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~-~Ks~~~v~~y~~~f~~~c~~~~~~~~~~~~~~~~~~~~~~~ 83 (211)
T 4b4c_A 5 ENIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELV-DKSETDLRRLGELVHNGCIKALKDSSSGTERTGGRLGKVKG 83 (211)
T ss_dssp ---CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCT-TSCHHHHHHHHHHHHHHHHHHHC-----------------C
T ss_pred ccCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccC-CCCHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccc
Confidence 35678999999999999999994 2589999754 33 555544331 0000
Q ss_pred -----------------------cc---------------CC-----CCCCCCCCHHHHHHHHHHHHhhC-Cchhhhcc-
Q 037024 61 -----------------------YL---------------RP-----DIKHGGFTKEEDTIICNLYCTMG-SRWSVIAS- 95 (238)
Q Consensus 61 -----------------------~L---------------~p-----~i~k~~WT~eED~~L~~~v~~~G-~~W~~Ia~- 95 (238)
.| -| ......||++||..|+..+.+|| ++|..|-.
T Consensus 84 ~~~~~~~v~~nA~~il~R~~~l~~L~~~v~~~~~~~~~~~i~~~~~~~~~~~~W~~~~D~~LL~Gi~k~G~g~w~~Ir~D 163 (211)
T 4b4c_A 84 PTFRISGVQVNAKLVISHEEELIPLHKSIPSDPEERKQYTIPCHTKAAHFDIDWGKEDDSNLLIGIYEYGYGSWEMIKMD 163 (211)
T ss_dssp CEEEETTEEEEHHHHHHHHHHHHHHHHHSCSSHHHHHTCCCCSCCCCCCSSSCCCHHHHHHHHHHHHHHCTTCHHHHHHC
T ss_pred hhhhhcccchhHHHHHHhHHHHHHHHHHHHhchhhHHHcCcCCCCCCCCCCCCccHHHHHHHHHHHHHHCcCcHHHHHhC
Confidence 00 00 01123599999999999999999 89998864
Q ss_pred -cC------------CCCCHHHHHHHHHHhhch
Q 037024 96 -QL------------PGRTDNDVKNYWNTKLKK 115 (238)
Q Consensus 96 -~l------------~gRt~~~cr~Rw~~~l~~ 115 (238)
.| ..+++..+..|...+|+-
T Consensus 164 ~~l~~~~k~~~~~~~k~p~a~~L~rR~~~Ll~~ 196 (211)
T 4b4c_A 164 PDLSLTHKILPDDPDKKPQAKQLQTRADYLIKL 196 (211)
T ss_dssp SSSSCTTTSSCSSTTSSCCHHHHHHHHHHHHHH
T ss_pred hhcCccccccccccccCCChHHHHHHHHHHHHH
Confidence 21 124566788887766653
No 89
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=96.86 E-value=9.2e-05 Score=53.22 Aligned_cols=50 Identities=20% Similarity=0.466 Sum_probs=40.0
Q ss_pred CCCCCCHHHHHHHHHHHHHhCC--------CCCceecccccC---CCCCcchhhhhhcccc
Q 037024 13 KRGPWSAEEDSILKNYLEQFGN--------GGNWIALPKKAG---LNRCGKSCRLRWLNYL 62 (238)
Q Consensus 13 ~kg~WT~eED~~L~~~v~~~g~--------~~~W~~Ia~~~~---~~Rt~~qcr~Rw~~~L 62 (238)
+...||.+|..+|++++..+-. ...|..||..|. ..||+.||+.+|.++.
T Consensus 3 R~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~ 63 (86)
T 2ebi_A 3 RAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLL 63 (86)
T ss_dssp CSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 5678999999999999986411 127999998753 5799999999998764
No 90
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=96.73 E-value=0.004 Score=56.20 Aligned_cols=101 Identities=16% Similarity=0.224 Sum_probs=77.2
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCCceecccccCCCCCcchhhh-------hhcccc-------------------------
Q 037024 15 GPWSAEEDSILKNYLEQFGNGGNWIALPKKAGLNRCGKSCRL-------RWLNYL------------------------- 62 (238)
Q Consensus 15 g~WT~eED~~L~~~v~~~g~~~~W~~Ia~~~~~~Rt~~qcr~-------Rw~~~L------------------------- 62 (238)
+.||.-+=..++.++.+||. .+-..||..|++++|...++. ||..+-
T Consensus 124 ~~WnrrDF~~FI~a~~kyGR-~d~~~IA~ev~~~Kt~eEV~~Y~~vFw~Ry~Ei~d~erii~~IEkgE~ki~r~~~~~~~ 202 (374)
T 2y9y_A 124 TNWNKLEFRKFITVSGKYGR-NSIQAIARELAPGKTLEEVRAYAKAFWSNIERIEDYEKYLKIIENEEEKIKRVKMQQEA 202 (374)
T ss_dssp CCSCHHHHHHHHHHHHHHCT-TCHHHHHSSCCCSSSHHHHHHHHHHHHHTCSSCSCCTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCH-hHHHHHHHHHccCCCHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46999999999999999998 689999999965788877661 221110
Q ss_pred ---------C----------CC-CCCCCCCHHHHHHHHHHHHhhC----Cchhhhccc------------CCCCCHHHHH
Q 037024 63 ---------R----------PD-IKHGGFTKEEDTIICNLYCTMG----SRWSVIASQ------------LPGRTDNDVK 106 (238)
Q Consensus 63 ---------~----------p~-i~k~~WT~eED~~L~~~v~~~G----~~W~~Ia~~------------l~gRt~~~cr 106 (238)
+ +. .+...||++||..|+-++.+|| +.|..|-.. +..||+..+.
T Consensus 203 L~~Ki~~y~~P~~~L~i~y~~~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~ 282 (374)
T 2y9y_A 203 LRRKLSEYKNPFFDLKLKHPPSSNNKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELA 282 (374)
T ss_dssp HHHHHTTCSSHHHHCCCSSCCCCSSCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHH
T ss_pred HHHHHHHccCCHHHceeccCCCCCCCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHH
Confidence 0 11 1345799999999999999999 459998432 3569999999
Q ss_pred HHHHHhhchh
Q 037024 107 NYWNTKLKKN 116 (238)
Q Consensus 107 ~Rw~~~l~~~ 116 (238)
.|...+++-.
T Consensus 283 rRc~tLi~~I 292 (374)
T 2y9y_A 283 RRGNTLLQCL 292 (374)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999888753
No 91
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=95.86 E-value=0.0033 Score=45.79 Aligned_cols=48 Identities=13% Similarity=0.298 Sum_probs=41.3
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCCCceecccccC----CCCCcchhhhhhcccc
Q 037024 13 KRGPWSAEEDSILKNYLEQFGNGGNWIALPKKAG----LNRCGKSCRLRWLNYL 62 (238)
Q Consensus 13 ~kg~WT~eED~~L~~~v~~~g~~~~W~~Ia~~~~----~~Rt~~qcr~Rw~~~L 62 (238)
+...||.||...|..++++|.. .|-.|+.... ..||..+..+||..+.
T Consensus 29 ~~~~WT~eETd~LfdLc~~fdl--Rw~vI~DRy~~~~~~~RtvEdLK~RYY~V~ 80 (93)
T 4iej_A 29 HDDAWTKAETDHLFDLSRRFDL--RFVVIHDRYDHQQFKKRSVEDLKERYYHIC 80 (93)
T ss_dssp CBTTBCHHHHHHHHHHHHHTTT--CHHHHHHHCCTTTSCCCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCC--CeEEEeeccccCCCCCCCHHHHHHHHHHHH
Confidence 4468999999999999999997 9999997764 2799999999998654
No 92
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=95.84 E-value=0.028 Score=49.40 Aligned_cols=72 Identities=15% Similarity=0.179 Sum_probs=57.5
Q ss_pred CCCCCHHHHHHHHHHHHhhC-CchhhhcccCCCCCHHHHHHHHHHhhch-------------------------------
Q 037024 68 HGGFTKEEDTIICNLYCTMG-SRWSVIASQLPGRTDNDVKNYWNTKLKK------------------------------- 115 (238)
Q Consensus 68 k~~WT~eED~~L~~~v~~~G-~~W~~Ia~~l~gRt~~~cr~Rw~~~l~~------------------------------- 115 (238)
-+.||..+...++.++.+|| ..|..||..|+|+|...|+..+......
T Consensus 110 F~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~~Y~~vFw~ry~ei~d~ek~~~~IE~gE~ki~r~~~~~~~l 189 (304)
T 1ofc_X 110 FTAWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAVFWERCTELQDIERIMGQIERGEGKIQRRLSIKKAL 189 (304)
T ss_dssp CTTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHHHHHHHGGGCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCCCHHHHHHHHHHHHHhHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35799999999999999999 5799999999999999997665322110
Q ss_pred -------------------hhhcCCCChHHhHHHHhhhHHhCC
Q 037024 116 -------------------NVLAGKLSDNTQVSVSTIPEEFGN 139 (238)
Q Consensus 116 -------------------~~~~~~~t~~ed~~l~~~~~~~g~ 139 (238)
.-+...||.+||..|+-.+.+||-
T Consensus 190 ~~Ki~~~~~P~~~L~i~y~~~k~k~yteeEDRfLL~~l~k~G~ 232 (304)
T 1ofc_X 190 DQKMSRYRAPFHQLRLQYGNNKGKNYTEIEDRFLVCMLHKLGF 232 (304)
T ss_dssp HHHHHTCSSHHHHCCCCCTTCCCSSCCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHhcCcHHHhccccCCCCCCccCHHHHHHHHHHHHHhcC
Confidence 012356899999999999999986
No 93
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=94.75 E-value=0.026 Score=46.55 Aligned_cols=39 Identities=31% Similarity=0.545 Sum_probs=32.0
Q ss_pred ccCCCCCCCCCCCCHHHHHHHHHHHHHhCCCCCceecccc
Q 037024 5 PCCDKANVKRGPWSAEEDSILKNYLEQFGNGGNWIALPKK 44 (238)
Q Consensus 5 ~~~~k~~~~kg~WT~eED~~L~~~v~~~g~~~~W~~Ia~~ 44 (238)
|++.++......||.+||..|+..|.+||- ++|..|-.-
T Consensus 125 ~~~~~~~~~~~~W~~~~D~~LL~Gi~k~G~-g~w~~Ir~D 163 (211)
T 4b4c_A 125 PCHTKAAHFDIDWGKEDDSNLLIGIYEYGY-GSWEMIKMD 163 (211)
T ss_dssp CSCCCCCCSSSCCCHHHHHHHHHHHHHHCT-TCHHHHHHC
T ss_pred CCCCCCCCCCCCccHHHHHHHHHHHHHHCc-CcHHHHHhC
Confidence 455566666678999999999999999998 799988653
No 94
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=94.22 E-value=0.083 Score=35.72 Aligned_cols=47 Identities=13% Similarity=-0.024 Sum_probs=39.7
Q ss_pred CCCCCCHHHHHHHHHHHHhhCCc---hhhhcccC--CCCCHHHHHHHHHHhh
Q 037024 67 KHGGFTKEEDTIICNLYCTMGSR---WSVIASQL--PGRTDNDVKNYWNTKL 113 (238)
Q Consensus 67 ~k~~WT~eED~~L~~~v~~~G~~---W~~Ia~~l--~gRt~~~cr~Rw~~~l 113 (238)
.+-.||+|..+..+++|..+|.. +..|-+.| +|.|..+|+.+.+.|.
T Consensus 6 ~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR 57 (64)
T 1irz_A 6 PRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFR 57 (64)
T ss_dssp SSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHH
T ss_pred CCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999943 77887765 6899999999987654
No 95
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=89.15 E-value=0.31 Score=42.11 Aligned_cols=28 Identities=29% Similarity=0.630 Sum_probs=25.7
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCCceeccc
Q 037024 15 GPWSAEEDSILKNYLEQFGNGGNWIALPK 43 (238)
Q Consensus 15 g~WT~eED~~L~~~v~~~g~~~~W~~Ia~ 43 (238)
..|+.+||..|+..|.+||. ++|..|-.
T Consensus 169 c~W~~~dD~~LLvGIykyGy-G~We~Ir~ 196 (270)
T 2xb0_X 169 SNWTKEEDEKLLIGVFKYGY-GSWTQIRD 196 (270)
T ss_dssp SCCCHHHHHHHHHHHHHHCT-TCHHHHHH
T ss_pred CCcChHHHHHHHHHHHHHcC-CcHHHHhc
Confidence 56999999999999999999 79999964
No 96
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=88.42 E-value=0.27 Score=42.41 Aligned_cols=26 Identities=31% Similarity=0.468 Sum_probs=24.1
Q ss_pred CCCHHHHHHHHHHHHhhC-Cchhhhcc
Q 037024 70 GFTKEEDTIICNLYCTMG-SRWSVIAS 95 (238)
Q Consensus 70 ~WT~eED~~L~~~v~~~G-~~W~~Ia~ 95 (238)
.|+.+||..|+..|.+|| +.|..|..
T Consensus 170 ~W~~~dD~~LLvGIykyGyG~We~Ir~ 196 (270)
T 2xb0_X 170 NWTKEEDEKLLIGVFKYGYGSWTQIRD 196 (270)
T ss_dssp CCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CcChHHHHHHHHHHHHHcCCcHHHHhc
Confidence 499999999999999999 89999963
No 97
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=87.22 E-value=0.38 Score=32.42 Aligned_cols=49 Identities=8% Similarity=0.051 Sum_probs=35.9
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCC-CCceecccccCC-CCCcchhhhhhc
Q 037024 11 NVKRGPWSAEEDSILKNYLEQFGNG-GNWIALPKKAGL-NRCGKSCRLRWL 59 (238)
Q Consensus 11 ~~~kg~WT~eED~~L~~~v~~~g~~-~~W~~Ia~~~~~-~Rt~~qcr~Rw~ 59 (238)
...+-.||+|..+...++|...|.. ..+..|.+.|+. +.|..++..+.+
T Consensus 4 ~k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQ 54 (64)
T 1irz_A 4 KKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQ 54 (64)
T ss_dssp CCSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHH
T ss_pred CCCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHH
Confidence 3467789999999999999999952 236677776652 567777765544
No 98
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=80.32 E-value=5.9 Score=35.55 Aligned_cols=41 Identities=24% Similarity=0.312 Sum_probs=35.3
Q ss_pred CCCCHHHHHHHHHHHHhhC-CchhhhcccCC-CCCHHHHHHHH
Q 037024 69 GGFTKEEDTIICNLYCTMG-SRWSVIASQLP-GRTDNDVKNYW 109 (238)
Q Consensus 69 ~~WT~eED~~L~~~v~~~G-~~W~~Ia~~l~-gRt~~~cr~Rw 109 (238)
+.||.-+=..++.+..+|| ..-..||..|. |+|...|+...
T Consensus 124 ~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~~Y~ 166 (374)
T 2y9y_A 124 TNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVRAYA 166 (374)
T ss_dssp CCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHHHHH
Confidence 4699999999999999999 56999999997 99999998543
No 99
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=67.78 E-value=9.4 Score=28.63 Aligned_cols=94 Identities=18% Similarity=0.209 Sum_probs=60.4
Q ss_pred CCCCCCCCHHHH--HHHHHHHHHhCCCCCceecccccCCCCCcchhhhhhccccCCCCCCCCCCHHHHHHHHHHHHhhCC
Q 037024 11 NVKRGPWSAEED--SILKNYLEQFGNGGNWIALPKKAGLNRCGKSCRLRWLNYLRPDIKHGGFTKEEDTIICNLYCTMGS 88 (238)
Q Consensus 11 ~~~kg~WT~eED--~~L~~~v~~~g~~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~L~p~i~k~~WT~eED~~L~~~v~~~G~ 88 (238)
+.-+.+|.+.+. +.|.+..+..|. ....++. ++ +|... =-+|..+|.+.|+
T Consensus 4 ~~~~~r~~~~~~Fl~~L~~F~~~rGt--pl~~~P~-i~-gk~lD-----------------------L~~Ly~~V~~~GG 56 (121)
T 2rq5_A 4 GSLGRRWGPNVQRLACIKKHLRSQGI--TMDELPL-IG-GCELD-----------------------LACFFRLINEMGG 56 (121)
T ss_dssp CCCSSCCCHHHHHHHHHHHHHHHTTC--CCSSCCE-ET-TEECC-----------------------HHHHHHHHHHTTS
T ss_pred HHhhHhcCCcHHHHHHHHHHHHHcCC--CCCCCCc-CC-CEecc-----------------------HHHHHHHHHHcCc
Confidence 345677988765 456777777787 4443432 22 23221 1247788888884
Q ss_pred --------chhhhcccC--CCC---CHHHHHHHHHHhhchhhhcCCCChHHhHHHHhhh
Q 037024 89 --------RWSVIASQL--PGR---TDNDVKNYWNTKLKKNVLAGKLSDNTQVSVSTIP 134 (238)
Q Consensus 89 --------~W~~Ia~~l--~gR---t~~~cr~Rw~~~l~~~~~~~~~t~~ed~~l~~~~ 134 (238)
.|..||..| |.- .+..+|..|..+|-+.-. .+++|-..|.+-+
T Consensus 57 ~~~Vt~~k~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~L~~YE~---~~~~e~~~l~~~v 112 (121)
T 2rq5_A 57 MQQVTDLKKWNKLADMLRIPKTAQDRLAKLQEAYCQYLLSYDS---LSPEEHRRLEKEV 112 (121)
T ss_dssp HHHHHHTTCHHHHHHHTCCCTTCSSHHHHHHHHHHTTHHHHHH---CCHHHHHHHHHHH
T ss_pred HHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHhHHHHC---cCHHHHhhHHHHH
Confidence 699999988 322 256889999999988543 6677776665544
No 100
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=65.03 E-value=3.2 Score=30.87 Aligned_cols=39 Identities=18% Similarity=0.301 Sum_probs=31.0
Q ss_pred HHHHHHHhhCC--------chhhhcccCCCCCHHHHHHHHHHhhchh
Q 037024 78 IICNLYCTMGS--------RWSVIASQLPGRTDNDVKNYWNTKLKKN 116 (238)
Q Consensus 78 ~L~~~v~~~G~--------~W~~Ia~~l~gRt~~~cr~Rw~~~l~~~ 116 (238)
.|..+|...|+ .|..||..|.--.+..++..|..+|-+-
T Consensus 53 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~Lr~~Y~k~L~~y 99 (116)
T 2li6_A 53 YLYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLPY 99 (116)
T ss_dssp HHHHHHHHHTSHHHHHHTTCHHHHHHHHTSCCTTHHHHHHHHHHSHH
T ss_pred HHHHHHHHhcCHHHccccCcHHHHHHHhCCChHHHHHHHHHHHHHHH
Confidence 47778888873 6999999885333789999999998874
No 101
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=63.69 E-value=6.5 Score=29.16 Aligned_cols=39 Identities=13% Similarity=0.274 Sum_probs=29.6
Q ss_pred HHHHHHHhhCC--------chhhhcccCCCC----CHHHHHHHHHHhhchh
Q 037024 78 IICNLYCTMGS--------RWSVIASQLPGR----TDNDVKNYWNTKLKKN 116 (238)
Q Consensus 78 ~L~~~v~~~G~--------~W~~Ia~~l~gR----t~~~cr~Rw~~~l~~~ 116 (238)
.|..+|...|+ .|..|+..|.-- .+.++|..|..+|.+-
T Consensus 44 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~a~~~Lk~~Y~k~L~~y 94 (117)
T 2jrz_A 44 SLSKIVVEEGGYEAICKDRRWARVAQRLNYPPGKNIGSLLRSHYERIVYPY 94 (117)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCTTCTHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHccCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHH
Confidence 47778888873 699999998421 1568899999988874
No 102
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=61.48 E-value=7.9 Score=28.04 Aligned_cols=39 Identities=13% Similarity=0.304 Sum_probs=29.0
Q ss_pred HHHHHHHhhCC--------chhhhcccCCC-CC---HHHHHHHHHHhhchh
Q 037024 78 IICNLYCTMGS--------RWSVIASQLPG-RT---DNDVKNYWNTKLKKN 116 (238)
Q Consensus 78 ~L~~~v~~~G~--------~W~~Ia~~l~g-Rt---~~~cr~Rw~~~l~~~ 116 (238)
.|..+|.+.|+ .|..||..|.- .+ +.++|..|..+|.+-
T Consensus 48 ~Ly~~V~~~GG~~~V~~~~~W~~va~~lg~~~~~~~~~~lk~~Y~k~L~~y 98 (107)
T 2lm1_A 48 TLHRIVQEEGGMEQTTKDRKWAKVANRMQYPSSKSVGATLKAHYERILHPF 98 (107)
T ss_dssp HHHHHHHHHTCHHHHHHHTTHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHHH
Confidence 46777777773 69999999842 22 568899999888763
No 103
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=61.28 E-value=21 Score=27.47 Aligned_cols=51 Identities=16% Similarity=0.164 Sum_probs=36.5
Q ss_pred HHHHHHHhhCC--------chhhhcccCC--CC---CHHHHHHHHHHhhchh--hhcCCCChHHhH
Q 037024 78 IICNLYCTMGS--------RWSVIASQLP--GR---TDNDVKNYWNTKLKKN--VLAGKLSDNTQV 128 (238)
Q Consensus 78 ~L~~~v~~~G~--------~W~~Ia~~l~--gR---t~~~cr~Rw~~~l~~~--~~~~~~t~~ed~ 128 (238)
.|..+|...|+ .|..|+..|. .. .+..+|..|..+|.+- ..+|.-.+++-.
T Consensus 68 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~tsa~~~Lk~~Y~k~L~~yE~~~~g~~~p~~~~ 133 (145)
T 2kk0_A 68 MLYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKYLYPYECEKRGLSNPNELQ 133 (145)
T ss_dssp HHHHHHHHHTCHHHHHHHTCHHHHHHHTTCCTTSTTHHHHHHHHHHHHSSHHHHHHTCCCCHHHHH
T ss_pred HHHHHHHHhCCHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence 47777888873 6999999883 22 2678999999999985 335655555543
No 104
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.4.3.1 PDB: 1kn5_A
Probab=60.15 E-value=4.7 Score=30.33 Aligned_cols=39 Identities=18% Similarity=0.301 Sum_probs=30.2
Q ss_pred HHHHHHHhhCC--------chhhhcccCCCCCHHHHHHHHHHhhchh
Q 037024 78 IICNLYCTMGS--------RWSVIASQLPGRTDNDVKNYWNTKLKKN 116 (238)
Q Consensus 78 ~L~~~v~~~G~--------~W~~Ia~~l~gRt~~~cr~Rw~~~l~~~ 116 (238)
.|..+|.+.|+ .|..|+..|.--.+..+|..|.++|-+-
T Consensus 52 ~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~Lr~~Y~k~L~~y 98 (123)
T 1kkx_A 52 YLYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLPY 98 (123)
T ss_dssp HHHHHHTTTSCHHHHTTSHHHHHHHHHHTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHhccccccHHHHHHHHCCChHHHHHHHHHHHHHHH
Confidence 36677777763 5999999885333899999999998874
No 105
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=58.05 E-value=9.4 Score=28.60 Aligned_cols=39 Identities=15% Similarity=0.221 Sum_probs=29.5
Q ss_pred HHHHHHHhhCC--------chhhhcccCCC-C---CHHHHHHHHHHhhchh
Q 037024 78 IICNLYCTMGS--------RWSVIASQLPG-R---TDNDVKNYWNTKLKKN 116 (238)
Q Consensus 78 ~L~~~v~~~G~--------~W~~Ia~~l~g-R---t~~~cr~Rw~~~l~~~ 116 (238)
.|..+|...|+ .|..||..|.- . .+..+|..|..+|.+-
T Consensus 55 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~s~~~~Lk~~Y~k~L~~y 105 (125)
T 2cxy_A 55 RLYVCVKEIGGLAQVNKNKKWRELATNLNVGTSSSAASSLKKQYIQYLFAF 105 (125)
T ss_dssp HHHHHHHHHTSHHHHHHHTCHHHHHHHTTSCSSHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHcCCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHH
Confidence 47777888773 69999998842 2 2568899999988874
No 106
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=57.65 E-value=9.3 Score=28.54 Aligned_cols=39 Identities=15% Similarity=0.347 Sum_probs=28.8
Q ss_pred HHHHHHHhhCC--------chhhhcccCCC-C-C--HHHHHHHHHHhhchh
Q 037024 78 IICNLYCTMGS--------RWSVIASQLPG-R-T--DNDVKNYWNTKLKKN 116 (238)
Q Consensus 78 ~L~~~v~~~G~--------~W~~Ia~~l~g-R-t--~~~cr~Rw~~~l~~~ 116 (238)
+|..+|.+.|+ .|..|+..|.- . + +..+|..|.++|.+-
T Consensus 46 ~Ly~~V~~~GG~~~V~~~k~W~~V~~~lg~~~~~~~~~~Lr~~Y~k~L~~y 96 (122)
T 2eqy_A 46 QLNKLVAEEGGFAVVCKDRKWTKIATKMGFAPGKAVGSHIRGHYERILNPY 96 (122)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCSSSHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHccCHHHHcCCCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHHH
Confidence 47777888773 69999998832 1 1 468899999888774
No 107
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=54.54 E-value=11 Score=28.19 Aligned_cols=49 Identities=14% Similarity=0.125 Sum_probs=34.4
Q ss_pred HHHHHHHHhhCC--------chhhhcccCC--CC---CHHHHHHHHHHhhchhhh--cCCCChH
Q 037024 77 TIICNLYCTMGS--------RWSVIASQLP--GR---TDNDVKNYWNTKLKKNVL--AGKLSDN 125 (238)
Q Consensus 77 ~~L~~~v~~~G~--------~W~~Ia~~l~--gR---t~~~cr~Rw~~~l~~~~~--~~~~t~~ 125 (238)
-.|..+|...|+ .|..||..|. .. .+..+|..|..+|.+--. ++.-+++
T Consensus 55 ~~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~sa~~~Lk~~Y~k~L~~yE~~~~~~~~p~ 118 (128)
T 1c20_A 55 YELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYECEKKNLSTPA 118 (128)
T ss_dssp HHHHHHHHHHTCHHHHHHHTTHHHHHHHTCCCSSCCSHHHHHHHHHHHHTHHHHHHHHCCSCHH
T ss_pred HHHHHHHHHhcCHHHcCccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHHHHHcCCChH
Confidence 357778888873 6999999883 22 267899999999988532 3444443
No 108
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=53.17 E-value=4.3 Score=30.59 Aligned_cols=59 Identities=12% Similarity=0.180 Sum_probs=43.3
Q ss_pred HHHHHHHHHhCC------CCCceecccccCCCCCc----chhhhhhccccCCCCCCCCCCHHHHHHHHHHHH
Q 037024 23 SILKNYLEQFGN------GGNWIALPKKAGLNRCG----KSCRLRWLNYLRPDIKHGGFTKEEDTIICNLYC 84 (238)
Q Consensus 23 ~~L~~~v~~~g~------~~~W~~Ia~~~~~~Rt~----~qcr~Rw~~~L~p~i~k~~WT~eED~~L~~~v~ 84 (238)
-+|..+|.+.|- ...|..||..++...+. ...+..|.++|.|-- ..+++|-..|.+-|.
T Consensus 45 ~~Ly~~V~~~GG~~~Vt~~k~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~L~~YE---~~~~~e~~~l~~~v~ 113 (121)
T 2rq5_A 45 ACFFRLINEMGGMQQVTDLKKWNKLADMLRIPKTAQDRLAKLQEAYCQYLLSYD---SLSPEEHRRLEKEVL 113 (121)
T ss_dssp HHHHHHHHHTTSHHHHHHTTCHHHHHHHTCCCTTCSSHHHHHHHHHHTTHHHHH---HCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCcHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHhHHHH---CcCHHHHhhHHHHHH
Confidence 468888888872 25999999999865433 467888998887632 378888888877664
No 109
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=51.59 E-value=12 Score=23.81 Aligned_cols=43 Identities=12% Similarity=0.071 Sum_probs=31.0
Q ss_pred CCHHHHHHHHHHHHhhCCchhhhcccCCCCCHHHHHHHHHHhhch
Q 037024 71 FTKEEDTIICNLYCTMGSRWSVIASQLPGRTDNDVKNYWNTKLKK 115 (238)
Q Consensus 71 WT~eED~~L~~~v~~~G~~W~~Ia~~l~gRt~~~cr~Rw~~~l~~ 115 (238)
.++ .+..++.++-..|-.+..||..+ |-+...|+.+....++.
T Consensus 16 L~~-~~r~il~l~~~~g~s~~eIA~~l-gis~~tv~~~~~ra~~~ 58 (70)
T 2o8x_A 16 LTT-DQREALLLTQLLGLSYADAAAVC-GCPVGTIRSRVARARDA 58 (70)
T ss_dssp SCH-HHHHHHHHHHTSCCCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred CCH-HHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 444 44455556667788999999999 88999888877655443
No 110
>3cz6_A DNA-binding protein RAP1; helical bundle, activator, chromosomal protein, nucleus, phosphoprotein, repressor, telomere; HET: MES; 1.85A {Saccharomyces cerevisiae} PDB: 3owt_A
Probab=50.54 E-value=13 Score=29.45 Aligned_cols=24 Identities=25% Similarity=0.343 Sum_probs=19.0
Q ss_pred CCCCCCCCCHHHHHHHH--------HHHHhhC
Q 037024 64 PDIKHGGFTKEEDTIIC--------NLYCTMG 87 (238)
Q Consensus 64 p~i~k~~WT~eED~~L~--------~~v~~~G 87 (238)
|....|-||.++|+.|. +++++||
T Consensus 110 P~N~pGIWT~eDDe~L~s~d~~dikrL~kKHG 141 (168)
T 3cz6_A 110 PPNVPGIWTHDDDESLKSNDQEQIRKLVKKHG 141 (168)
T ss_dssp CTTCTTCCCHHHHHHHHSCCHHHHHHHHHHHC
T ss_pred CCCCCCCCChhhHHHHHcCCHHHHHHHHHHhC
Confidence 56788999999999886 5566666
No 111
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=49.98 E-value=14 Score=24.26 Aligned_cols=43 Identities=14% Similarity=0.253 Sum_probs=30.1
Q ss_pred CCHHHHHHHHHHHHh----hCCchhhhcccCCCCCHHHHHHHHHHhhch
Q 037024 71 FTKEEDTIICNLYCT----MGSRWSVIASQLPGRTDNDVKNYWNTKLKK 115 (238)
Q Consensus 71 WT~eED~~L~~~v~~----~G~~W~~Ia~~l~gRt~~~cr~Rw~~~l~~ 115 (238)
.++.|- .++.+.-- .|-.+..||..+ |-+...|+.+....++.
T Consensus 11 L~~~er-~il~l~~~l~~~~~~s~~eIA~~l-~is~~tV~~~~~ra~~k 57 (73)
T 1ku3_A 11 LSEREA-MVLKMRKGLIDGREHTLEEVGAYF-GVTRERIRQIENKALRK 57 (73)
T ss_dssp SCHHHH-HHHHHHHTTTTSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred CCHHHH-HHHHHHHhcccCCCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 344444 44445443 567899999999 89999998887765544
No 112
>2jxj_A Histone demethylase jarid1A; ARID domain, chromatin regulator, developmental protein, dioxygenase, iron, metal-binding, nucleus, oxidoreductase; NMR {Homo sapiens}
Probab=48.69 E-value=6.6 Score=27.87 Aligned_cols=38 Identities=24% Similarity=0.455 Sum_probs=27.5
Q ss_pred HHHHHHHhhC--------CchhhhcccCC---C-CCHHHHHHHHHHhhch
Q 037024 78 IICNLYCTMG--------SRWSVIASQLP---G-RTDNDVKNYWNTKLKK 115 (238)
Q Consensus 78 ~L~~~v~~~G--------~~W~~Ia~~l~---g-Rt~~~cr~Rw~~~l~~ 115 (238)
.|..+|.+.| +.|..|+..|. + -.+.++|..|.++|.+
T Consensus 40 ~Ly~~V~~~GG~~~V~~~~~W~~v~~~lg~~~~~~~~~~Lk~~Y~k~L~~ 89 (96)
T 2jxj_A 40 ALSKIVASKGGFEMVTKEKKWSKVGSRLGYLPGKGTGSLLKSHYERILYP 89 (96)
T ss_dssp HHHHHHHHHHTTHHHHHHTTHHHHHHHHTCCSCSCHHHHHHHHHTTTTHH
T ss_pred HHHHHHHHcCCHHHHccCCcHHHHHHHhCCCCcCcHHHHHHHHHHHHHHH
Confidence 4667777776 36999999873 1 1266889989888866
No 113
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=46.30 E-value=4.1 Score=30.24 Aligned_cols=40 Identities=15% Similarity=0.360 Sum_probs=30.1
Q ss_pred HHHHHHHHhCC------CCCceecccccCCCCCcchhhhhhccccCC
Q 037024 24 ILKNYLEQFGN------GGNWIALPKKAGLNRCGKSCRLRWLNYLRP 64 (238)
Q Consensus 24 ~L~~~v~~~g~------~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~L~p 64 (238)
.|..+|.+.|- ...|..||..++... +...+..|.++|.|
T Consensus 53 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~-~~~Lr~~Y~k~L~~ 98 (116)
T 2li6_A 53 YLYMLVQKFGGADQVTRTQQWSMVAQRLQISD-YQQLESIYFRILLP 98 (116)
T ss_dssp HHHHHHHHHTSHHHHHHTTCHHHHHHHHTSCC-TTHHHHHHHHHHSH
T ss_pred HHHHHHHHhcCHHHccccCcHHHHHHHhCCCh-HHHHHHHHHHHHHH
Confidence 57777887762 248999999998544 77888888888764
No 114
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=46.01 E-value=15 Score=23.69 Aligned_cols=39 Identities=10% Similarity=0.164 Sum_probs=28.6
Q ss_pred HHHHHHHHH----hhCCchhhhcccCCCCCHHHHHHHHHHhhch
Q 037024 76 DTIICNLYC----TMGSRWSVIASQLPGRTDNDVKNYWNTKLKK 115 (238)
Q Consensus 76 D~~L~~~v~----~~G~~W~~Ia~~l~gRt~~~cr~Rw~~~l~~ 115 (238)
+..++.+.- ..|-.+.+||..+ |-+...|+.+....+++
T Consensus 10 er~il~l~~~l~~~~g~s~~eIA~~l-gis~~tV~~~~~ra~~k 52 (68)
T 2p7v_B 10 EAKVLRMRFGIDMNTDYTLEEVGKQF-DVTRERIRQIEAKALRK 52 (68)
T ss_dssp HHHHHHHHTTTTSSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHccCCCCCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 334444444 3467899999999 99999999988766554
No 115
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=43.95 E-value=17 Score=27.88 Aligned_cols=45 Identities=11% Similarity=0.041 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHhhC-CchhhhcccCCCCCHHHHHHHHHHhhchhhhc
Q 037024 74 EEDTIICNLYCTMG-SRWSVIASQLPGRTDNDVKNYWNTKLKKNVLA 119 (238)
Q Consensus 74 eED~~L~~~v~~~G-~~W~~Ia~~l~gRt~~~cr~Rw~~~l~~~~~~ 119 (238)
+-|..|+.+.++.| -.|..||+.+ |-+...|+.|...+....+.+
T Consensus 3 ~~d~~il~~L~~~~~~s~~~la~~l-g~s~~tv~~rl~~L~~~g~i~ 48 (162)
T 3i4p_A 3 RLDRKILRILQEDSTLAVADLAKKV-GLSTTPCWRRIQKMEEDGVIR 48 (162)
T ss_dssp HHHHHHHHHHTTCSCSCHHHHHHHH-TCCHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCee
Confidence 45778888888877 5799999999 999999999999888776554
No 116
>1ig6_A MRF-2, modulator recognition factor 2; DNA binding protein, DNA-binding motif, protein-DNA interaction; NMR {Homo sapiens} SCOP: a.4.3.1 PDB: 2oeh_A
Probab=40.88 E-value=12 Score=27.19 Aligned_cols=39 Identities=10% Similarity=0.196 Sum_probs=28.8
Q ss_pred HHHHHHHhhC--------CchhhhcccCC--CC---CHHHHHHHHHHhhchh
Q 037024 78 IICNLYCTMG--------SRWSVIASQLP--GR---TDNDVKNYWNTKLKKN 116 (238)
Q Consensus 78 ~L~~~v~~~G--------~~W~~Ia~~l~--gR---t~~~cr~Rw~~~l~~~ 116 (238)
.|..+|...| +.|..||..|. .. .+.+++..|..+|.+-
T Consensus 37 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~s~~~~Lk~~Y~k~L~~y 88 (107)
T 1ig6_A 37 TMFQAAQKLGGYETITARRQWKHIYDELGGNPGSTSAATCTRRHYERLILPY 88 (107)
T ss_dssp HHHHHHHHTTHHHHHHHHTTHHHHHHHHTCCTTCTTTTTTHHHHHHHHTTTT
T ss_pred HHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHH
Confidence 4677777777 36999999873 11 2467899999988874
No 117
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=40.31 E-value=99 Score=22.09 Aligned_cols=87 Identities=11% Similarity=0.106 Sum_probs=47.9
Q ss_pred CCCHHHHHHHHHHHHHhCCCCCceecccccCCCCCcchhh---hhhcccc--CCCCCCCCCCHHHHHHHHHHHHhhCCch
Q 037024 16 PWSAEEDSILKNYLEQFGNGGNWIALPKKAGLNRCGKSCR---LRWLNYL--RPDIKHGGFTKEEDTIICNLYCTMGSRW 90 (238)
Q Consensus 16 ~WT~eED~~L~~~v~~~g~~~~W~~Ia~~~~~~Rt~~qcr---~Rw~~~L--~p~i~k~~WT~eED~~L~~~v~~~G~~W 90 (238)
..|.++-..++.++. -|. .-..||..++ .+...++ .+|...- .+.-.....+++++..|+.+...-+-.-
T Consensus 6 ~~s~~~r~~i~~~~~-~G~--s~~~ia~~lg--is~~Tv~r~~~~~~~~g~~~~~gr~~~l~~~~~~~i~~~~~~~~~s~ 80 (141)
T 1u78_A 6 ALSDTERAQLDVMKL-LNV--SLHEMSRKIS--RSRHCIRVYLKDPVSYGTSKRAPRRKALSVRDERNVIRAASNSCKTA 80 (141)
T ss_dssp CCCHHHHHHHHHHHH-TTC--CHHHHHHHHT--CCHHHHHHHHHSGGGTTCCCCCCCCCSSCHHHHHHHHHHHHHCCCCH
T ss_pred cCCHHHHHHHHHHHH-cCC--CHHHHHHHHC--cCHHHHHHHHHcccccCCcCCCCCCCcCCHHHHHHHHHHHhCCCCCH
Confidence 477888777777764 464 7789999887 4443332 2332211 1111223578888888877733222233
Q ss_pred hhhcccCC-CCCHHHHHH
Q 037024 91 SVIASQLP-GRTDNDVKN 107 (238)
Q Consensus 91 ~~Ia~~l~-gRt~~~cr~ 107 (238)
..|+..++ .-+...|..
T Consensus 81 ~~i~~~lg~~~s~~tV~r 98 (141)
T 1u78_A 81 RDIRNELQLSASKRTILN 98 (141)
T ss_dssp HHHHHHTTCCSCHHHHHH
T ss_pred HHHHHHHCCCccHHHHHH
Confidence 56666662 145555544
No 118
>3cz6_A DNA-binding protein RAP1; helical bundle, activator, chromosomal protein, nucleus, phosphoprotein, repressor, telomere; HET: MES; 1.85A {Saccharomyces cerevisiae} PDB: 3owt_A
Probab=38.69 E-value=18 Score=28.63 Aligned_cols=25 Identities=24% Similarity=0.554 Sum_probs=18.8
Q ss_pred CCCCCCCCCHHHHHHHH--------HHHHHhCC
Q 037024 10 ANVKRGPWSAEEDSILK--------NYLEQFGN 34 (238)
Q Consensus 10 ~~~~kg~WT~eED~~L~--------~~v~~~g~ 34 (238)
|.-..|-||+|+|+.|. +++++||.
T Consensus 110 P~N~pGIWT~eDDe~L~s~d~~dikrL~kKHG~ 142 (168)
T 3cz6_A 110 PPNVPGIWTHDDDESLKSNDQEQIRKLVKKHGT 142 (168)
T ss_dssp CTTCTTCCCHHHHHHHHSCCHHHHHHHHHHHCH
T ss_pred CCCCCCCCChhhHHHHHcCCHHHHHHHHHHhCH
Confidence 34578999999999886 46666664
No 119
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=35.57 E-value=29 Score=23.72 Aligned_cols=41 Identities=20% Similarity=0.208 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHhhCCchhhhcccCCCCCHHHHHHHHHHhhch
Q 037024 74 EEDTIICNLYCTMGSRWSVIASQLPGRTDNDVKNYWNTKLKK 115 (238)
Q Consensus 74 eED~~L~~~v~~~G~~W~~Ia~~l~gRt~~~cr~Rw~~~l~~ 115 (238)
+.+..++.++-..|-.-..||..| |-+...|+.+....+++
T Consensus 40 ~~~r~vl~l~~~~g~s~~eIA~~l-gis~~tV~~~l~ra~~~ 80 (92)
T 3hug_A 40 AEHRAVIQRSYYRGWSTAQIATDL-GIAEGTVKSRLHYAVRA 80 (92)
T ss_dssp HHHHHHHHHHHTSCCCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 344455566566677889999999 89999999887755443
No 120
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=32.14 E-value=1.5e+02 Score=21.67 Aligned_cols=67 Identities=15% Similarity=0.084 Sum_probs=42.5
Q ss_pred CCCCCHHHHHHHHHHHHhhCCchhhhcccCCCCCHHHHHHHHHHhh-----chhhh----cCCCChHHhHHHHhhhHH
Q 037024 68 HGGFTKEEDTIICNLYCTMGSRWSVIASQLPGRTDNDVKNYWNTKL-----KKNVL----AGKLSDNTQVSVSTIPEE 136 (238)
Q Consensus 68 k~~WT~eED~~L~~~v~~~G~~W~~Ia~~l~gRt~~~cr~Rw~~~l-----~~~~~----~~~~t~~ed~~l~~~~~~ 136 (238)
....|.++-..++.++. -|..-..||+.+ |.+...|+.-...+. .+... ....+++....|..++..
T Consensus 30 ~~~~s~e~r~~iv~~~~-~G~s~~~iA~~l-gis~~TV~rw~~~~~~~G~~~~~~r~gr~~~~~~~~~~~~I~~~~~~ 105 (149)
T 1k78_A 30 GRPLPDVVRQRIVELAH-QGVRPCDISRQL-RVSHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVEKIAEYKRQ 105 (149)
T ss_dssp TSCCCHHHHHHHHHHHH-TTCCHHHHHHHH-TCCHHHHHHHHHHHHHHSCCCCCCCCCCCCSSSCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH-cCCCHHHHHHHH-CcCHHHHHHHHHHHHHcCCCCccCCCCCCCCCCCHHHHHHHHHHHHh
Confidence 34688998888888884 577788999999 777777665433321 11111 123566656666666544
No 121
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=30.41 E-value=54 Score=21.23 Aligned_cols=42 Identities=17% Similarity=0.178 Sum_probs=30.8
Q ss_pred CCHHHHHHHHHHHHhhCCchhhhcccCCCCCHHHHHHHHHHhhch
Q 037024 71 FTKEEDTIICNLYCTMGSRWSVIASQLPGRTDNDVKNYWNTKLKK 115 (238)
Q Consensus 71 WT~eED~~L~~~v~~~G~~W~~Ia~~l~gRt~~~cr~Rw~~~l~~ 115 (238)
.|+.|-+.| .++ ..|-.-..||..+ |-+...|+.+....+++
T Consensus 17 L~~~e~~vl-~l~-~~g~s~~eIA~~l-~is~~tV~~~~~r~~~k 58 (79)
T 1x3u_A 17 LSERERQVL-SAV-VAGLPNKSIAYDL-DISPRTVEVHRANVMAK 58 (79)
T ss_dssp HCHHHHHHH-HHH-TTTCCHHHHHHHT-TSCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHH-HHH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 455555444 444 6677889999999 88999999887766654
No 122
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=29.95 E-value=43 Score=25.33 Aligned_cols=29 Identities=14% Similarity=0.099 Sum_probs=22.9
Q ss_pred hCCchhhhcccCCCCCHHHHHHHHHHhhch
Q 037024 86 MGSRWSVIASQLPGRTDNDVKNYWNTKLKK 115 (238)
Q Consensus 86 ~G~~W~~Ia~~l~gRt~~~cr~Rw~~~l~~ 115 (238)
.|-....||..| |-+...|+.+....++.
T Consensus 150 ~g~s~~eIA~~l-gis~~tV~~~l~ra~~~ 178 (184)
T 2q1z_A 150 GDLTHRELAAET-GLPLGTIKSRIRLALDR 178 (184)
T ss_dssp SCCSSCCSTTTC-CCCCHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 466789999999 88889998887765543
No 123
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=29.95 E-value=1.7e+02 Score=21.68 Aligned_cols=66 Identities=11% Similarity=0.016 Sum_probs=40.9
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCCceecccccCCCCCcchhhhhhccc------cCCCCC----CCCCCHHHHHHHHHHHH
Q 037024 15 GPWSAEEDSILKNYLEQFGNGGNWIALPKKAGLNRCGKSCRLRWLNY------LRPDIK----HGGFTKEEDTIICNLYC 84 (238)
Q Consensus 15 g~WT~eED~~L~~~v~~~g~~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~------L~p~i~----k~~WT~eED~~L~~~v~ 84 (238)
...|.++-..++.++. -|. ....||..++ .+...+ .||.+. +.+... ....+.++.+.|++++.
T Consensus 24 ~~~s~e~r~~ii~l~~-~G~--s~~~IA~~lg--is~~TV-~rwl~r~~~~G~~~~~~r~gr~~~~~~~~~~~~I~~~~~ 97 (159)
T 2k27_A 24 RPLPEVVRQRIVDLAH-QGV--RPCDISRQLR--VSHGCV-SKILGRYYETGSIRPGVIGGSKPKVATPKVVEKIGDYKR 97 (159)
T ss_dssp CSSCHHHHHHHHHHHH-HTC--CHHHHHHHHT--CCSHHH-HHHHCCSSTTSCCCCCCCCCCCCCCCCTTHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH-cCC--CHHHHHHHHC--cCHHHH-HHHHHHHHhcCCccCCCCCCCCCCCCCHHHHHHHHHHHH
Confidence 4688888888888774 465 7789999887 333333 334332 222211 23477777778887775
Q ss_pred hh
Q 037024 85 TM 86 (238)
Q Consensus 85 ~~ 86 (238)
+.
T Consensus 98 ~~ 99 (159)
T 2k27_A 98 QN 99 (159)
T ss_dssp HC
T ss_pred HC
Confidence 53
No 124
>1pqr_A Alpha-A-conotoxin EIVA; alpha-helix, two disulfide bonds, C-TERM amidation; HET: HYP; NMR {Synthetic} SCOP: j.30.1.3
Probab=29.43 E-value=8.1 Score=21.33 Aligned_cols=11 Identities=45% Similarity=1.223 Sum_probs=8.5
Q ss_pred CCCCccCCCCC
Q 037024 1 MGRAPCCDKAN 11 (238)
Q Consensus 1 mg~~~~~~k~~ 11 (238)
.||+|+|++|.
T Consensus 18 v~rp~yc~rps 28 (31)
T 1pqr_A 18 VGRPPYCDRPS 28 (31)
T ss_dssp SSCCHHHHSCC
T ss_pred CCCCCcCCCCC
Confidence 47888888875
No 125
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=29.26 E-value=60 Score=22.34 Aligned_cols=47 Identities=17% Similarity=0.123 Sum_probs=35.5
Q ss_pred CCCCCCHHHHHHHHHHHHhhCCchhhhcccCCCCCHHHHHHHHHHhhchh
Q 037024 67 KHGGFTKEEDTIICNLYCTMGSRWSVIASQLPGRTDNDVKNYWNTKLKKN 116 (238)
Q Consensus 67 ~k~~WT~eED~~L~~~v~~~G~~W~~Ia~~l~gRt~~~cr~Rw~~~l~~~ 116 (238)
.....|+.|-+.|.-++ .|..-..||..| |-+...|+.+....+++-
T Consensus 26 ~~~~Lt~rE~~Vl~l~~--~G~s~~eIA~~L-~iS~~TV~~~~~~i~~Kl 72 (90)
T 3ulq_B 26 EQDVLTPRECLILQEVE--KGFTNQEIADAL-HLSKRSIEYSLTSIFNKL 72 (90)
T ss_dssp ---CCCHHHHHHHHHHH--TTCCHHHHHHHH-TCCHHHHHHHHHHHHHHT
T ss_pred cccCCCHHHHHHHHHHH--cCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 34468888887765544 787889999999 999999999988776653
No 126
>2yqf_A Ankyrin-1; death domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yvi_A
Probab=28.82 E-value=55 Score=23.54 Aligned_cols=35 Identities=17% Similarity=0.375 Sum_probs=28.3
Q ss_pred CHHHHHHHHHHHHhhCCchhhhcccCCCCCHHHHHH
Q 037024 72 TKEEDTIICNLYCTMGSRWSVIASQLPGRTDNDVKN 107 (238)
Q Consensus 72 T~eED~~L~~~v~~~G~~W~~Ia~~l~gRt~~~cr~ 107 (238)
++.-+..|..+....|..|..+|+.| |=+..+|..
T Consensus 14 ~~~~~~~~~~ia~~lg~~Wk~LAr~L-g~s~~~I~~ 48 (111)
T 2yqf_A 14 TEQAEMKMAVISEHLGLSWAELAREL-QFSVEDINR 48 (111)
T ss_dssp SHHHHHHHHHHHHHHTTTHHHHHHHT-TCCHHHHHH
T ss_pred HhHHHHHHHHHHHHHhhhHHHHHHHc-CCCHHHHHH
Confidence 66677788888899999999999999 766665544
No 127
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=28.37 E-value=47 Score=22.46 Aligned_cols=39 Identities=8% Similarity=0.137 Sum_probs=27.9
Q ss_pred HHHHHHHHHh----hCCchhhhcccCCCCCHHHHHHHHHHhhch
Q 037024 76 DTIICNLYCT----MGSRWSVIASQLPGRTDNDVKNYWNTKLKK 115 (238)
Q Consensus 76 D~~L~~~v~~----~G~~W~~Ia~~l~gRt~~~cr~Rw~~~l~~ 115 (238)
+..++.+.-- .|-.+..||..+ |-+...|+.+-...+++
T Consensus 23 er~vl~l~~~l~~~~~~s~~EIA~~l-gis~~tV~~~~~ra~~k 65 (87)
T 1tty_A 23 EAMVLRMRYGLLDGKPKTLEEVGQYF-NVTRERIRQIEVKALRK 65 (87)
T ss_dssp HHHHHHHHHTTTTSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCCCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 3444444443 567899999999 89999998887655544
No 128
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=28.36 E-value=50 Score=25.58 Aligned_cols=45 Identities=16% Similarity=0.183 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHhhC-CchhhhcccCCCCCHHHHHHHHHHhhchhhhc
Q 037024 74 EEDTIICNLYCTMG-SRWSVIASQLPGRTDNDVKNYWNTKLKKNVLA 119 (238)
Q Consensus 74 eED~~L~~~v~~~G-~~W~~Ia~~l~gRt~~~cr~Rw~~~l~~~~~~ 119 (238)
+-|..|+.+....| -.+..||+.+ |-+...|+.|...+....+..
T Consensus 27 ~~d~~IL~~L~~~~~~s~~eLA~~l-glS~~tv~~rl~~L~~~G~I~ 72 (171)
T 2e1c_A 27 EIDKKIIKILQNDGKAPLREISKIT-GLAESTIHERIRKLRESGVIK 72 (171)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHH-TSCHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCeE
Confidence 45667777777766 5799999999 889999999999887776554
No 129
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=27.26 E-value=79 Score=17.72 Aligned_cols=38 Identities=8% Similarity=0.222 Sum_probs=27.0
Q ss_pred CCCHHHHHHHHHHHHhhCCchhhhcccCCCCCHHHHHHHH
Q 037024 70 GFTKEEDTIICNLYCTMGSRWSVIASQLPGRTDNDVKNYW 109 (238)
Q Consensus 70 ~WT~eED~~L~~~v~~~G~~W~~Ia~~l~gRt~~~cr~Rw 109 (238)
..++++-..++.++ .-|-....||+.+ |-+...|+...
T Consensus 5 ~l~~~~~~~i~~~~-~~g~s~~~IA~~l-gis~~Tv~~~~ 42 (51)
T 1tc3_C 5 ALSDTERAQLDVMK-LLNVSLHEMSRKI-SRSRHCIRVYL 42 (51)
T ss_dssp CCCHHHHHHHHHHH-HTTCCHHHHHHHH-TCCHHHHHHHH
T ss_pred CCCHHHHHHHHHHH-HcCCCHHHHHHHH-CcCHHHHHHHH
Confidence 45666666666665 4577789999999 77877776544
No 130
>2of5_A Death domain-containing protein cradd; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=26.78 E-value=55 Score=23.97 Aligned_cols=29 Identities=24% Similarity=0.472 Sum_probs=22.5
Q ss_pred HHHHHHHhhCCchhhhcccCCCCCHHHHHH
Q 037024 78 IICNLYCTMGSRWSVIASQLPGRTDNDVKN 107 (238)
Q Consensus 78 ~L~~~v~~~G~~W~~Ia~~l~gRt~~~cr~ 107 (238)
.|..+....|..|..+|+.| |=+..+|..
T Consensus 26 ~l~~Ia~~lG~~Wk~LAR~L-Glse~dId~ 54 (114)
T 2of5_A 26 QINQLAQRLGPEWEPMVLSL-GLSQTDIYR 54 (114)
T ss_dssp HHHHHHHTCCSTHHHHHHTT-TCCHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHc-CCCHHHHHH
Confidence 46666788999999999999 666665544
No 131
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=26.02 E-value=73 Score=23.61 Aligned_cols=44 Identities=11% Similarity=0.157 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHhhC-CchhhhcccCCCCCHHHHHHHHHHhhchhhh
Q 037024 74 EEDTIICNLYCTMG-SRWSVIASQLPGRTDNDVKNYWNTKLKKNVL 118 (238)
Q Consensus 74 eED~~L~~~v~~~G-~~W~~Ia~~l~gRt~~~cr~Rw~~~l~~~~~ 118 (238)
+-|..|+.+....| -.+..||+.+ |-+...|+.|...+....+.
T Consensus 9 ~~d~~il~~L~~~~~~s~~ela~~l-g~s~~tv~~~l~~L~~~G~i 53 (151)
T 2dbb_A 9 RVDMQLVKILSENSRLTYRELADIL-NTTRQRIARRIDKLKKLGII 53 (151)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHT-TSCHHHHHHHHHHHHHHTSE
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCE
Confidence 44567777777766 5799999999 88999999999887766543
No 132
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=25.81 E-value=63 Score=24.51 Aligned_cols=29 Identities=14% Similarity=0.070 Sum_probs=22.9
Q ss_pred hCCchhhhcccCCCCCHHHHHHHHHHhhch
Q 037024 86 MGSRWSVIASQLPGRTDNDVKNYWNTKLKK 115 (238)
Q Consensus 86 ~G~~W~~Ia~~l~gRt~~~cr~Rw~~~l~~ 115 (238)
.|-....||..| |-+...|+.+....++.
T Consensus 155 ~g~s~~EIA~~l-gis~~tV~~~l~ra~~~ 183 (194)
T 1or7_A 155 DGLSYEEIAAIM-DCPVGTVRSRIFRAREA 183 (194)
T ss_dssp TCCCHHHHHHHT-TSCHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 466789999999 88999998887755443
No 133
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=25.29 E-value=63 Score=22.26 Aligned_cols=43 Identities=30% Similarity=0.369 Sum_probs=33.2
Q ss_pred CCCHHHHHHHHHHHHhhCCchhhhcccCCCCCHHHHHHHHHHhhch
Q 037024 70 GFTKEEDTIICNLYCTMGSRWSVIASQLPGRTDNDVKNYWNTKLKK 115 (238)
Q Consensus 70 ~WT~eED~~L~~~v~~~G~~W~~Ia~~l~gRt~~~cr~Rw~~~l~~ 115 (238)
..|+.|-+.|.- + ..|-.-..||..| |-+...|+.+....+++
T Consensus 27 ~Lt~~e~~vl~l-~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~~k 69 (95)
T 3c57_A 27 GLTDQERTLLGL-L-SEGLTNKQIADRM-FLAEKTVKNYVSRLLAK 69 (95)
T ss_dssp CCCHHHHHHHHH-H-HTTCCHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHH-H-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 467777666554 4 6777889999999 88999999888766655
No 134
>2of5_H Leucine-rich repeat and death domain-containing protein; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=25.13 E-value=53 Score=24.03 Aligned_cols=31 Identities=19% Similarity=0.442 Sum_probs=23.7
Q ss_pred HHHHHHHHHhhCCchhhhcccCCCCCHHHHHH
Q 037024 76 DTIICNLYCTMGSRWSVIASQLPGRTDNDVKN 107 (238)
Q Consensus 76 D~~L~~~v~~~G~~W~~Ia~~l~gRt~~~cr~ 107 (238)
|..|..+....|..|..+|+.| |=+..+|..
T Consensus 13 ~~~l~~ia~~lg~dWk~LAr~L-g~s~~~I~~ 43 (118)
T 2of5_H 13 QSNLLSVAGRLGLDWPAVALHL-GVSYREVQR 43 (118)
T ss_dssp HHHHHHHHHTCCTTHHHHHHHT-TCCHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHc-CCCHHHHHH
Confidence 4567777889999999999999 656655533
No 135
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=24.88 E-value=72 Score=20.21 Aligned_cols=34 Identities=12% Similarity=0.011 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHhhCCchhhhcccCCCCCHHHHHHH
Q 037024 74 EEDTIICNLYCTMGSRWSVIASQLPGRTDNDVKNY 108 (238)
Q Consensus 74 eED~~L~~~v~~~G~~W~~Ia~~l~gRt~~~cr~R 108 (238)
-|.+.|.++...++++....|+.| |=+...+..+
T Consensus 19 ~E~~~i~~aL~~~~gn~~~aA~~L-Gisr~tL~rk 52 (63)
T 3e7l_A 19 FEKIFIEEKLREYDYDLKRTAEEI-GIDLSNLYRK 52 (63)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHH-TCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHH-CcCHHHHHHH
Confidence 477788899999999999999988 5555544443
No 136
>2o71_A Death domain-containing protein cradd; raidd, apoptosis; 2.00A {Homo sapiens}
Probab=24.52 E-value=58 Score=23.87 Aligned_cols=29 Identities=24% Similarity=0.472 Sum_probs=22.2
Q ss_pred HHHHHHHhhCCchhhhcccCCCCCHHHHHH
Q 037024 78 IICNLYCTMGSRWSVIASQLPGRTDNDVKN 107 (238)
Q Consensus 78 ~L~~~v~~~G~~W~~Ia~~l~gRt~~~cr~ 107 (238)
.|..+....|..|..+|+.| |=+..+|..
T Consensus 26 ~l~~Ia~~LG~~Wk~LAR~L-Glse~dId~ 54 (115)
T 2o71_A 26 QINQLAQRLGPEWEPMVLSL-GLSQTDIYR 54 (115)
T ss_dssp HHHHHHHHCCTTHHHHHHHT-TCCHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHc-CCCHHHHHH
Confidence 46666788999999999999 666665543
No 137
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=23.91 E-value=67 Score=21.43 Aligned_cols=43 Identities=30% Similarity=0.256 Sum_probs=32.7
Q ss_pred CCCHHHHHHHHHHHHhhCCchhhhcccCCCCCHHHHHHHHHHhhch
Q 037024 70 GFTKEEDTIICNLYCTMGSRWSVIASQLPGRTDNDVKNYWNTKLKK 115 (238)
Q Consensus 70 ~WT~eED~~L~~~v~~~G~~W~~Ia~~l~gRt~~~cr~Rw~~~l~~ 115 (238)
..|+.|-+.|.- + ..|-.-.+||..| |-+...|+.+....+++
T Consensus 21 ~Lt~~e~~vl~l-~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~~k 63 (82)
T 1je8_A 21 QLTPRERDILKL-I-AQGLPNKMIARRL-DITESTVKVHVKHMLKK 63 (82)
T ss_dssp GSCHHHHHHHHH-H-TTTCCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHH-H-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 467777665554 4 5777889999999 89999999887766554
No 138
>2jvw_A Uncharacterized protein; solution structure, alpha helical protein, structural GE unknown function, PSI-2, protein structure initiative; NMR {Vibrio fischeri}
Probab=23.55 E-value=42 Score=23.58 Aligned_cols=48 Identities=13% Similarity=0.181 Sum_probs=29.6
Q ss_pred HHHHHHHHHHhhCCchhhhcccCCCCC---HHHHHHHHHHhhchhhhcCCCChHHhHH
Q 037024 75 EDTIICNLYCTMGSRWSVIASQLPGRT---DNDVKNYWNTKLKKNVLAGKLSDNTQVS 129 (238)
Q Consensus 75 ED~~L~~~v~~~G~~W~~Ia~~l~gRt---~~~cr~Rw~~~l~~~~~~~~~t~~ed~~ 129 (238)
-+.+|-+||..|| |..++..+.=|+ ...++.-- +-+++.+|..+..+.
T Consensus 17 LE~ilt~Lv~~YG--W~~L~~~i~I~CF~~~PSikSSL-----KFLRKTpWAR~KVE~ 67 (88)
T 2jvw_A 17 LQKLLTELVEHYG--WEELSYMVNINCFKKDPSIKSSL-----KFLRKTDWARERVEN 67 (88)
T ss_dssp HHHHHHHHHHHTC--HHHHHHHTTSSSTTSSCCHHHHH-----HHHHHSHHHHHHHHH
T ss_pred HHHHHHHHHHHhC--HHHHHhhcccccCCCCCchHHHH-----HHHhcCHhHHHHHHH
Confidence 3578899999998 999998885432 22232211 124456777665443
No 139
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=23.21 E-value=94 Score=19.56 Aligned_cols=44 Identities=23% Similarity=0.178 Sum_probs=33.2
Q ss_pred CCCCHHHHHHHHHHHHhhCCchhhhcccCCCCCHHHHHHHHHHhhch
Q 037024 69 GGFTKEEDTIICNLYCTMGSRWSVIASQLPGRTDNDVKNYWNTKLKK 115 (238)
Q Consensus 69 ~~WT~eED~~L~~~v~~~G~~W~~Ia~~l~gRt~~~cr~Rw~~~l~~ 115 (238)
...|+.|-+.|.- + ..|..-..||..+ |-+...|+.+....+++
T Consensus 10 ~~L~~~e~~il~~-~-~~g~s~~eIA~~l-~is~~tV~~~~~~~~~k 53 (74)
T 1fse_A 10 PLLTKREREVFEL-L-VQDKTTKEIASEL-FISEKTVRNHISNAMQK 53 (74)
T ss_dssp CCCCHHHHHHHHH-H-TTTCCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHH-H-HcCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 3577777766654 4 5677889999999 88999999888766554
No 140
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=23.13 E-value=74 Score=23.65 Aligned_cols=45 Identities=16% Similarity=0.183 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHhhC-CchhhhcccCCCCCHHHHHHHHHHhhchhhhc
Q 037024 74 EEDTIICNLYCTMG-SRWSVIASQLPGRTDNDVKNYWNTKLKKNVLA 119 (238)
Q Consensus 74 eED~~L~~~v~~~G-~~W~~Ia~~l~gRt~~~cr~Rw~~~l~~~~~~ 119 (238)
+-|..|+.+....| -.+..||+.+ |-+...|+.|...+....+..
T Consensus 7 ~~~~~il~~L~~~~~~s~~ela~~l-g~s~~tv~~~l~~L~~~G~i~ 52 (151)
T 2cyy_A 7 EIDKKIIKILQNDGKAPLREISKIT-GLAESTIHERIRKLRESGVIK 52 (151)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHH-CSCHHHHHHHHHHHHHHTSSC
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCeE
Confidence 34566777777766 5799999999 889999999998887776543
No 141
>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} SCOP: a.4.1.12
Probab=23.04 E-value=1e+02 Score=21.08 Aligned_cols=35 Identities=14% Similarity=0.068 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHhhCCchhhhcccCCCCCHHHHHHH
Q 037024 73 KEEDTIICNLYCTMGSRWSVIASQLPGRTDNDVKNY 108 (238)
Q Consensus 73 ~eED~~L~~~v~~~G~~W~~Ia~~l~gRt~~~cr~R 108 (238)
.-|...|.+++..+|++....|+.| |=+...++.+
T Consensus 50 ~~E~~~i~~aL~~~~gn~~~aA~~L-GIsr~tL~rk 84 (91)
T 1ntc_A 50 ELERTLLTTALRHTQGHKQEAARLL-GWGAATLTAK 84 (91)
T ss_dssp HHHHHHHHHHHHHTTTCTTHHHHHT-TCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHH-CcCHHHHHHH
Confidence 3477788889999998999999998 6565555444
No 142
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=22.62 E-value=88 Score=22.44 Aligned_cols=39 Identities=13% Similarity=0.055 Sum_probs=29.0
Q ss_pred HHHHHHHHHHhhCCchhhhcccCCCCCHHHHHHHHHHhhc
Q 037024 75 EDTIICNLYCTMGSRWSVIASQLPGRTDNDVKNYWNTKLK 114 (238)
Q Consensus 75 ED~~L~~~v~~~G~~W~~Ia~~l~gRt~~~cr~Rw~~~l~ 114 (238)
.+..++.++-..|-....||..+ |-+...|+.+....++
T Consensus 29 ~~r~vl~l~~~~g~s~~EIA~~l-giS~~tV~~~l~ra~~ 67 (113)
T 1xsv_A 29 KQRNYLELFYLEDYSLSEIADTF-NVSRQAVYDNIRRTGD 67 (113)
T ss_dssp HHHHHHHHHHTSCCCHHHHHHHT-TCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHH
Confidence 34455556666788899999999 8899999887765443
No 143
>1wxp_A THO complex subunit 1; death domain, structural genomics, nuclear matrix, riken structural genomics/proteomics initiative, RSGI, transport protein; NMR {Homo sapiens}
Probab=22.51 E-value=93 Score=22.28 Aligned_cols=31 Identities=19% Similarity=0.472 Sum_probs=22.9
Q ss_pred HHHHHHHHHhhCCchhhhcccCCCCCHHHHHH
Q 037024 76 DTIICNLYCTMGSRWSVIASQLPGRTDNDVKN 107 (238)
Q Consensus 76 D~~L~~~v~~~G~~W~~Ia~~l~gRt~~~cr~ 107 (238)
+..|..+....|..|..+|+.| |=+..+|..
T Consensus 18 ~~~~~~ia~~lg~~Wk~LAr~L-g~~~~~I~~ 48 (110)
T 1wxp_A 18 GEQIEVFANKLGEQWKILAPYL-EMKDSEIRQ 48 (110)
T ss_dssp HHHHHHHHHHHTTTHHHHTTTT-TCCHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHh-CCCHHHHHH
Confidence 4455566677899999999999 666666544
No 144
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=21.75 E-value=93 Score=18.91 Aligned_cols=37 Identities=16% Similarity=0.101 Sum_probs=27.9
Q ss_pred HHHHHHHHhhCCchhhhcccCCCCCHHHHHHHHHHhhch
Q 037024 77 TIICNLYCTMGSRWSVIASQLPGRTDNDVKNYWNTKLKK 115 (238)
Q Consensus 77 ~~L~~~v~~~G~~W~~Ia~~l~gRt~~~cr~Rw~~~l~~ 115 (238)
..++.+ -..|-.-.+||..| |-+...++.+....+++
T Consensus 4 ~~vl~l-~~~g~s~~eIA~~l-~is~~tV~~~~~~~~~k 40 (61)
T 2jpc_A 4 RQVLKL-IDEGYTNHGISEKL-HISIKTVETHRMNMMRK 40 (61)
T ss_dssp HHHHHH-HHTSCCSHHHHHHT-CSCHHHHHHHHHHHHHH
T ss_pred HHHHHH-HHcCCCHHHHHHHh-CCCHHHHHHHHHHHHHH
Confidence 344555 35577788999999 88999999888766654
No 145
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*
Probab=20.06 E-value=69 Score=24.60 Aligned_cols=35 Identities=14% Similarity=0.421 Sum_probs=27.0
Q ss_pred hhhcccCCCCCHHHHHHHHHHhhchhhhcCCCChHHhHHHHh
Q 037024 91 SVIASQLPGRTDNDVKNYWNTKLKKNVLAGKLSDNTQVSVST 132 (238)
Q Consensus 91 ~~Ia~~l~gRt~~~cr~Rw~~~l~~~~~~~~~t~~ed~~l~~ 132 (238)
..||..+.|+|+.+||..|+ + ...+|++|+..+.+
T Consensus 119 ~~vA~~ikgkt~eeir~~f~------I-~nd~t~eEe~~ir~ 153 (160)
T 2p1m_A 119 QTVADMIKGKTPEEIRTTFN------I-KNDFTPEEEEEVRR 153 (160)
T ss_dssp HHHHHTTTTCCHHHHHHHTT------C-CCCCCHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHcC------C-CCCCCHHHHHHHHH
Confidence 57888889999999998774 2 33589998876643
Done!