BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 037025
         (366 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2IFY|A Chain A, Structure Of Bacillus Anthracis Cofactor-Independent
           Phosphoglucerate Mutase
          Length = 508

 Score = 28.9 bits (63), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 15/76 (19%)

Query: 304 FDHSTL-ACG-LIGLPPSN-------------GVLPQSPMHTKSLAVLKTQFMKKKMVES 348
           F H+TL ACG  +GLP                G +    +   ++A+ + +F K +  +S
Sbjct: 38  FPHTTLTACGEAVGLPEGQMGNSEVGHLNIGAGRIVYQSLTRVNVAIREGEFDKNETFQS 97

Query: 349 ATESIKQKATDSEIYG 364
           A +S+K+K T   ++G
Sbjct: 98  AIKSVKEKGTALHLFG 113


>pdb|3FN9|A Chain A, Crystal Structure Of Putative Beta-galactosidase From
           Bacteroides Fragilis
 pdb|3FN9|B Chain B, Crystal Structure Of Putative Beta-galactosidase From
           Bacteroides Fragilis
 pdb|3FN9|C Chain C, Crystal Structure Of Putative Beta-galactosidase From
           Bacteroides Fragilis
 pdb|3FN9|D Chain D, Crystal Structure Of Putative Beta-galactosidase From
           Bacteroides Fragilis
          Length = 692

 Score = 28.5 bits (62), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 13/39 (33%), Positives = 18/39 (46%)

Query: 226 WSFIADYGVPLMVLVWSALSFSVPSKVPSGVPRRLFSPL 264
           WS I D+   +   +W+   F+VP     GVP R    L
Sbjct: 522 WSIIKDHPYIIASYLWNMFDFAVPMWTRGGVPARNMKGL 560


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.137    0.428 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,809,537
Number of Sequences: 62578
Number of extensions: 438441
Number of successful extensions: 986
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 985
Number of HSP's gapped (non-prelim): 2
length of query: 366
length of database: 14,973,337
effective HSP length: 100
effective length of query: 266
effective length of database: 8,715,537
effective search space: 2318332842
effective search space used: 2318332842
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (24.6 bits)