Query 037025
Match_columns 366
No_of_seqs 121 out of 568
Neff 6.1
Searched_HMMs 13730
Date Mon Mar 25 13:01:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037025.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/037025hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1qled_ f.23.8.1 (D:) Bacteria 42.6 11 0.00079 24.0 3.2 25 121-145 19-43 (43)
2 d1m56d_ f.23.8.1 (D:) Bacteria 41.5 13 0.00094 23.5 3.4 25 121-145 18-42 (42)
3 d2axtt1 f.23.34.1 (T:1-30) Pho 12.5 56 0.004 18.4 1.9 12 159-170 9-20 (30)
4 d1jb0m_ f.23.19.1 (M:) Subunit 9.1 1.2E+02 0.0087 17.3 2.5 14 288-301 12-25 (31)
5 d2e74e1 f.23.24.1 (E:1-32) Pet 9.0 1.7E+02 0.013 16.4 3.4 27 144-174 4-30 (32)
6 d1cmca_ a.43.1.5 (A:) Met repr 6.5 98 0.0072 22.3 1.6 18 75-92 54-71 (104)
7 d3b45a1 f.51.1.1 (A:91-270) Gl 6.1 2.4E+02 0.017 21.4 4.1 58 46-105 62-119 (180)
8 d2hg6a1 d.364.1.1 (A:1-106) Hy 4.6 27 0.002 25.6 -2.6 13 150-162 27-39 (106)
9 d1h2sb_ f.17.4.1 (B:) Sensory 4.5 1.3E+02 0.0094 19.2 1.1 41 41-81 2-46 (60)
10 d2nr9a1 f.51.1.1 (A:4-192) Glp 4.5 83 0.006 24.7 0.1 56 45-102 63-118 (189)
No 1
>d1qled_ f.23.8.1 (D:) Bacterial aa3 type cytochrome c oxidase subunit IV {Paracoccus denitrificans [TaxId: 266]}
Probab=42.58 E-value=11 Score=23.97 Aligned_cols=25 Identities=32% Similarity=0.538 Sum_probs=22.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhh
Q 037025 121 LYLAWAGWVCVWTSLVLFLLAIFNA 145 (366)
Q Consensus 121 ~fl~~~~wvgiW~~~~~~i~a~~~~ 145 (366)
-|+.|.-|.++-+.++++.+|++|+
T Consensus 19 gFi~~~t~~~i~~i~~liflAi~ns 43 (43)
T d1qled_ 19 GFIKGATWVSILSIAVLVFLALANS 43 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 5899999999999999999999884
No 2
>d1m56d_ f.23.8.1 (D:) Bacterial aa3 type cytochrome c oxidase subunit IV {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=41.49 E-value=13 Score=23.46 Aligned_cols=25 Identities=28% Similarity=0.440 Sum_probs=22.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhh
Q 037025 121 LYLAWAGWVCVWTSLVLFLLAIFNA 145 (366)
Q Consensus 121 ~fl~~~~wvgiW~~~~~~i~a~~~~ 145 (366)
-|+.|..|.++=+.++++.+|++|+
T Consensus 18 gFik~~t~~~i~~i~~liflAi~ns 42 (42)
T d1m56d_ 18 GFVRMVTWAAVVIVAALIFLALANA 42 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 5899999999999999999999985
No 3
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=12.52 E-value=56 Score=18.43 Aligned_cols=12 Identities=33% Similarity=0.866 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHH
Q 037025 159 LFGMLIAVLFLQ 170 (366)
Q Consensus 159 iF~~lIs~iFi~ 170 (366)
||+++|++.|.-
T Consensus 9 ifac~i~lfffa 20 (30)
T d2axtt1 9 IFACIIALFFFA 20 (30)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 788889887653
No 4
>d1jb0m_ f.23.19.1 (M:) Subunit XII of photosystem I reaction centre, PsaM {Synechococcus elongatus [TaxId: 32046]}
Probab=9.08 E-value=1.2e+02 Score=17.26 Aligned_cols=14 Identities=29% Similarity=0.584 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHH
Q 037025 288 IFAAFIPAAMIVGL 301 (366)
Q Consensus 288 i~~A~iPAlll~iL 301 (366)
...|++||++.+=|
T Consensus 12 lvial~pg~lafrl 25 (31)
T d1jb0m_ 12 LVIALLPAVLAFRL 25 (31)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 45788899887643
No 5
>d2e74e1 f.23.24.1 (E:1-32) PetL subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=9.04 E-value=1.7e+02 Score=16.38 Aligned_cols=27 Identities=22% Similarity=0.378 Sum_probs=16.3
Q ss_pred hhhhHHHhhhhhhhhHHHHHHHHHHHHHHhh
Q 037025 144 NACDLINRFTRIAGELFGMLIAVLFLQEATK 174 (366)
Q Consensus 144 ~~s~lv~y~TRFTeEiF~~lIs~iFi~eai~ 174 (366)
++..++-++.-| |+.-+.+||-.+++|
T Consensus 4 gavfyivfialf----fgiavgiifaiksik 30 (32)
T d2e74e1 4 GAVFYIVFIALF----FGIAVGIIFAIKSIK 30 (32)
T ss_dssp HHHHHHHHHHHH----HHHHHHHHHHHHTTT
T ss_pred eeeHHHHHHHHH----HHHHhhheeeEEEEe
Confidence 344444444433 777777788777765
No 6
>d1cmca_ a.43.1.5 (A:) Met repressor, MetJ (MetR) {Escherichia coli [TaxId: 562]}
Probab=6.49 E-value=98 Score=22.26 Aligned_cols=18 Identities=39% Similarity=0.600 Sum_probs=12.9
Q ss_pred hhhhhhHHHHHhcCCcee
Q 037025 75 STALCGIVHSVLGGQPLL 92 (366)
Q Consensus 75 s~ai~Giifslf~gQPL~ 92 (366)
|.-+|--+-.-|.||||-
T Consensus 54 SELLCEAFLHAfTGQPLP 71 (104)
T d1cmca_ 54 SELLCEAFLHAFTGQPLP 71 (104)
T ss_dssp HHHHHHHHHHHHHCCCCC
T ss_pred HHHHHHHHHHHhcCCCCC
Confidence 334566677778999985
No 7
>d3b45a1 f.51.1.1 (A:91-270) GlpG {Escherichia coli [TaxId: 562]}
Probab=6.08 E-value=2.4e+02 Score=21.41 Aligned_cols=58 Identities=21% Similarity=0.153 Sum_probs=34.7
Q ss_pred HhhhhhHHHhccCCcccCCCCcchhHHHHhhhhhhHHHHHhcCCceeeeeccchhHHHHH
Q 037025 46 FASALPVIAFGEQPAKDTDGSLSTVETLSSTALCGIVHSVLGGQPLLILGVAEPTVLMYT 105 (366)
Q Consensus 46 Fa~l~PaItFG~ll~~~T~~~igv~E~lls~ai~Giifslf~gQPL~Ilg~TGP~~vf~~ 105 (366)
+.|+..-..||..++++-+..-=..=.+++..++|++..++..+ ...|.+|-+...-.
T Consensus 62 ~~N~~~l~~~G~~lE~~~G~~~~~~~~~~~~~~g~l~~~~~~~~--~~~G~sg~i~~l~~ 119 (180)
T d3b45a1 62 LFNLLWWWYLGGAVEKRLGSGKLIVITLISALLSGYVQQKFSGP--WFGGLSGVVYALMG 119 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCS--CCCCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccchhheeeeeHHHHHHHHHHHHHhcc--ccccccchHHHHHH
Confidence 44566666788777776543222223334666677777777665 46788886544333
No 8
>d2hg6a1 d.364.1.1 (A:1-106) Hypothetical protein PA1123 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=4.62 E-value=27 Score=25.64 Aligned_cols=13 Identities=31% Similarity=0.616 Sum_probs=10.7
Q ss_pred HhhhhhhhhHHHH
Q 037025 150 NRFTRIAGELFGM 162 (366)
Q Consensus 150 ~y~TRFTeEiF~~ 162 (366)
.|+-||+|+.|++
T Consensus 27 ~~ivRFSEDsFGm 39 (106)
T d2hg6a1 27 RYIVRFSEDSFGM 39 (106)
T ss_dssp EEEEESCGGGCSS
T ss_pred eEEEEecccccCC
Confidence 5788999998874
No 9
>d1h2sb_ f.17.4.1 (B:) Sensory rhodopsin II transducer, Htr2 {Natronomonas pharaonis [TaxId: 2257]}
Probab=4.52 E-value=1.3e+02 Score=19.20 Aligned_cols=41 Identities=29% Similarity=0.370 Sum_probs=27.6
Q ss_pred hHHHHHh---hhhhHHHhccCC-cccCCCCcchhHHHHhhhhhhH
Q 037025 41 TTYIFFA---SALPVIAFGEQP-AKDTDGSLSTVETLSSTALCGI 81 (366)
Q Consensus 41 ~~flyFa---~l~PaItFG~ll-~~~T~~~igv~E~lls~ai~Gi 81 (366)
.+|+|.. .+.-+|++|... ...|+..-.++|.-+|..++=+
T Consensus 2 avfifvgaltvlfgaiaygevtaaaatgdaaavqeaavsailgli 46 (60)
T d1h2sb_ 2 AVFIFVGALTVLFGAIAYGEVTAAAATGDAAAVQEAAVSAILGLI 46 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred cEEEEEcHHHHHHhhhhhceehHhhhcCcHHHHHHHHHHHHHHHH
Confidence 3566653 455699999874 4567777788888877555433
No 10
>d2nr9a1 f.51.1.1 (A:4-192) GlpG homolog HI0618 {Haemophilus influenzae [TaxId: 727]}
Probab=4.52 E-value=83 Score=24.73 Aligned_cols=56 Identities=13% Similarity=0.175 Sum_probs=36.0
Q ss_pred HHhhhhhHHHhccCCcccCCCCcchhHHHHhhhhhhHHHHHhcCCceeeeeccchhHH
Q 037025 45 FFASALPVIAFGEQPAKDTDGSLSTVETLSSTALCGIVHSVLGGQPLLILGVAEPTVL 102 (366)
Q Consensus 45 yFa~l~PaItFG~ll~~~T~~~igv~E~lls~ai~Giifslf~gQPL~Ilg~TGP~~v 102 (366)
...|+..-..+|...++..+..-=..=.+++..++++++.++.++| .+|.+|-+--
T Consensus 63 l~~N~~~l~~~g~~~E~~~G~~~~~~~~~~~~~~~~l~~~~~~~~~--~vGaSG~v~g 118 (189)
T d2nr9a1 63 ILFNLSWFFIFGGMIERTFGSVKLLMLYVVASAITGYVQNYVSGPA--FFGLSGVVYA 118 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCSC--CCCSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCC--cccchHHHHH
Confidence 3455666677777777654432223334557888888888887776 4798886443
Done!