BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037027
(205 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 94.0 bits (232), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 71/191 (37%), Positives = 96/191 (50%), Gaps = 7/191 (3%)
Query: 17 TCDVHSHRVTVFNVSGLNLTGTIPXXXXXXXXXXXXXXXXXXXXGSIPSATFIT-HTLKY 75
CD +T ++SG + G +P G +P T + LK
Sbjct: 292 ACDT----LTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKV 347
Query: 76 VDLRGNQLSGAFPSFIFNKS-SLQDLDLSYNALSGEIPANICSNLP-FLEYISLSQNMFH 133
+DL N+ SG P + N S SL LDLS N SG I N+C N L+ + L N F
Sbjct: 348 LDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFT 407
Query: 134 GGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAE 193
G IP LS C+ L L LSFN SG IP +G+++KL++L L N L+GEIP+EL +
Sbjct: 408 GKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKT 467
Query: 194 LELMSLFDNEL 204
LE + L N+L
Sbjct: 468 LETLILDFNDL 478
Score = 80.5 bits (197), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 52/132 (39%), Positives = 72/132 (54%), Gaps = 1/132 (0%)
Query: 71 HTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQN 130
+TL+ + L+ N +G P + N S L L LS+N LSG IP+++ S L L + L N
Sbjct: 394 NTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGS-LSKLRDLKLWLN 452
Query: 131 MFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSN 190
M G IP L L+ L L FND +G IP + N T L + L NRL GEIP+ +
Sbjct: 453 MLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGR 512
Query: 191 LAELELMSLFDN 202
L L ++ L +N
Sbjct: 513 LENLAILKLSNN 524
Score = 74.3 bits (181), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 56/142 (39%), Positives = 68/142 (47%), Gaps = 1/142 (0%)
Query: 61 GSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLP 120
G IP L + L N LSG PS + + S L+DL L N L GEIP + +
Sbjct: 408 GKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMY-VK 466
Query: 121 FLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRL 180
LE + L N G IPS LS CT L + LS N +G IPK IG + L L L N
Sbjct: 467 TLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSF 526
Query: 181 QGEIPRELSNLAELELMSLFDN 202
G IP EL + L + L N
Sbjct: 527 SGNIPAELGDCRSLIWLDLNTN 548
Score = 73.6 bits (179), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 50/128 (39%), Positives = 67/128 (52%), Gaps = 1/128 (0%)
Query: 61 GSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLP 120
G+IPS+ L+ + L N L G P + +L+ L L +N L+GEIP+ + SN
Sbjct: 432 GTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGL-SNCT 490
Query: 121 FLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRL 180
L +ISLS N G IP + + L IL LS N FSG IP E+G+ L L L N
Sbjct: 491 NLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLF 550
Query: 181 QGEIPREL 188
G IP +
Sbjct: 551 NGTIPAAM 558
Score = 64.7 bits (156), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 39/94 (41%), Positives = 50/94 (53%), Gaps = 1/94 (1%)
Query: 93 NKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLS 152
N S+ LD+SYN LSG IP I S +P+L ++L N G IP + L IL LS
Sbjct: 630 NNGSMMFLDMSYNMLSGYIPKEIGS-MPYLFILNLGHNDISGSIPDEVGDLRGLNILDLS 688
Query: 153 FNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPR 186
N G IP+ + +T L E+ L N L G IP
Sbjct: 689 SNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE 722
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/215 (26%), Positives = 82/215 (38%), Gaps = 45/215 (20%)
Query: 35 LTGTIPXXXXXXXXXXXXXXXXXXXXGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNK 94
LTG IP G+IP+ +L ++DL N +G P+ +F +
Sbjct: 502 LTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQ 561
Query: 95 SSLQDLDL---------------------------------SYNALSGEIPANICSNL-- 119
S + N LS P NI S +
Sbjct: 562 SGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYG 621
Query: 120 ----PFLE------YISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTK 169
P + ++ +S NM G IP + YL IL L ND SG+IP E+G++
Sbjct: 622 GHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRG 681
Query: 170 LKELYLVRNRLQGEIPRELSNLAELELMSLFDNEL 204
L L L N+L G IP+ +S L L + L +N L
Sbjct: 682 LNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNL 716
Score = 57.8 bits (138), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 50/149 (33%), Positives = 71/149 (47%), Gaps = 33/149 (22%)
Query: 72 TLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPF--LEYISLSQ 129
L+++D+ GN+LSG F I + L+ L++S N G IP LP L+Y+SL++
Sbjct: 224 ALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP-----LPLKSLQYLSLAE 278
Query: 130 NMFHGGIPSALS-KCTYLQILGLS------------------------FNDFSGAIPKE- 163
N F G IP LS C L L LS N+FSG +P +
Sbjct: 279 NKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDT 338
Query: 164 IGNVTKLKELYLVRNRLQGEIPRELSNLA 192
+ + LK L L N GE+P L+NL+
Sbjct: 339 LLKMRGLKVLDLSFNEFSGELPESLTNLS 367
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 69/146 (47%), Gaps = 25/146 (17%)
Query: 71 HTLKYVDLRGNQLSGA-FPSFIFNKS--SLQDLDLSYNALSGEIPANICSNLPFLE---- 123
++L+ +DL N +SGA ++ + L+ L +S N +SG++ + C NL FL+
Sbjct: 151 NSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSN 210
Query: 124 ----------------YISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNV 167
++ +S N G A+S CT L++L +S N F G IP +
Sbjct: 211 NFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLP--L 268
Query: 168 TKLKELYLVRNRLQGEIPRELSNLAE 193
L+ L L N+ GEIP LS +
Sbjct: 269 KSLQYLSLAENKFTGEIPDFLSGACD 294
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 55/103 (53%), Gaps = 2/103 (1%)
Query: 61 GSIPSATFITH-TLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNL 119
G S TF + ++ ++D+ N LSG P I + L L+L +N +SG IP + +L
Sbjct: 621 GGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEV-GDL 679
Query: 120 PFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPK 162
L + LS N G IP A+S T L + LS N+ SG IP+
Sbjct: 680 RGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE 722
Score = 46.6 bits (109), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 53/217 (24%), Positives = 78/217 (35%), Gaps = 45/217 (20%)
Query: 34 NLTGTIPXXXXXXXXXXXXXXXXXXXXGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFN 93
+LTG IP G IP L + L N SG P+ + +
Sbjct: 477 DLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGD 536
Query: 94 KSSLQDLDLSYNALSGEIPA-------NICSNL----------------------PFLEY 124
SL LDL+ N +G IPA I +N LE+
Sbjct: 537 CRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEF 596
Query: 125 ----------------ISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVT 168
+++ ++ G + L +S+N SG IPKEIG++
Sbjct: 597 QGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMP 656
Query: 169 KLKELYLVRNRLQGEIPRELSNLAELELMSLFDNELQ 205
L L L N + G IP E+ +L L ++ L N+L
Sbjct: 657 YLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLD 693
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 67/163 (41%), Gaps = 56/163 (34%)
Query: 95 SSLQDLDLSYNALSGEIPA----NICSNLPF----------------------------- 121
+SL LDLS N+LSG + CS L F
Sbjct: 100 ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLS 159
Query: 122 --------------------LEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIP 161
L+++++S N G + +S+C L+ L +S N+FS IP
Sbjct: 160 ANSISGANVVGWVLSDGCGELKHLAISGNKISGDV--DVSRCVNLEFLDVSSNNFSTGIP 217
Query: 162 KEIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFDNEL 204
+G+ + L+ L + N+L G+ R +S EL+L+++ N+
Sbjct: 218 F-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQF 259
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 93.6 bits (231), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 71/191 (37%), Positives = 96/191 (50%), Gaps = 7/191 (3%)
Query: 17 TCDVHSHRVTVFNVSGLNLTGTIPXXXXXXXXXXXXXXXXXXXXGSIPSATFIT-HTLKY 75
CD +T ++SG + G +P G +P T + LK
Sbjct: 289 ACDT----LTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKV 344
Query: 76 VDLRGNQLSGAFPSFIFNKS-SLQDLDLSYNALSGEIPANICSNLP-FLEYISLSQNMFH 133
+DL N+ SG P + N S SL LDLS N SG I N+C N L+ + L N F
Sbjct: 345 LDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFT 404
Query: 134 GGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAE 193
G IP LS C+ L L LSFN SG IP +G+++KL++L L N L+GEIP+EL +
Sbjct: 405 GKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKT 464
Query: 194 LELMSLFDNEL 204
LE + L N+L
Sbjct: 465 LETLILDFNDL 475
Score = 80.5 bits (197), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 52/132 (39%), Positives = 72/132 (54%), Gaps = 1/132 (0%)
Query: 71 HTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQN 130
+TL+ + L+ N +G P + N S L L LS+N LSG IP+++ S L L + L N
Sbjct: 391 NTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGS-LSKLRDLKLWLN 449
Query: 131 MFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSN 190
M G IP L L+ L L FND +G IP + N T L + L NRL GEIP+ +
Sbjct: 450 MLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGR 509
Query: 191 LAELELMSLFDN 202
L L ++ L +N
Sbjct: 510 LENLAILKLSNN 521
Score = 74.3 bits (181), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 56/142 (39%), Positives = 68/142 (47%), Gaps = 1/142 (0%)
Query: 61 GSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLP 120
G IP L + L N LSG PS + + S L+DL L N L GEIP + +
Sbjct: 405 GKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMY-VK 463
Query: 121 FLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRL 180
LE + L N G IPS LS CT L + LS N +G IPK IG + L L L N
Sbjct: 464 TLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSF 523
Query: 181 QGEIPRELSNLAELELMSLFDN 202
G IP EL + L + L N
Sbjct: 524 SGNIPAELGDCRSLIWLDLNTN 545
Score = 73.6 bits (179), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 54/154 (35%), Positives = 71/154 (46%), Gaps = 1/154 (0%)
Query: 35 LTGTIPXXXXXXXXXXXXXXXXXXXXGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNK 94
TG IP G+IPS+ L+ + L N L G P +
Sbjct: 403 FTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYV 462
Query: 95 SSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFN 154
+L+ L L +N L+GEIP+ + SN L +ISLS N G IP + + L IL LS N
Sbjct: 463 KTLETLILDFNDLTGEIPSGL-SNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNN 521
Query: 155 DFSGAIPKEIGNVTKLKELYLVRNRLQGEIPREL 188
FSG IP E+G+ L L L N G IP +
Sbjct: 522 SFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM 555
Score = 64.3 bits (155), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 41/99 (41%), Positives = 53/99 (53%), Gaps = 2/99 (2%)
Query: 88 PSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQ 147
P+F N S+ LD+SYN LSG IP I S +P+L ++L N G IP + L
Sbjct: 623 PTFD-NNGSMMFLDMSYNMLSGYIPKEIGS-MPYLFILNLGHNDISGSIPDEVGDLRGLN 680
Query: 148 ILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPR 186
IL LS N G IP+ + +T L E+ L N L G IP
Sbjct: 681 ILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE 719
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/215 (26%), Positives = 82/215 (38%), Gaps = 45/215 (20%)
Query: 35 LTGTIPXXXXXXXXXXXXXXXXXXXXGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNK 94
LTG IP G+IP+ +L ++DL N +G P+ +F +
Sbjct: 499 LTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQ 558
Query: 95 SSLQDLDL---------------------------------SYNALSGEIPANICSNL-- 119
S + N LS P NI S +
Sbjct: 559 SGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYG 618
Query: 120 ----PFLE------YISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTK 169
P + ++ +S NM G IP + YL IL L ND SG+IP E+G++
Sbjct: 619 GHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRG 678
Query: 170 LKELYLVRNRLQGEIPRELSNLAELELMSLFDNEL 204
L L L N+L G IP+ +S L L + L +N L
Sbjct: 679 LNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNL 713
Score = 57.4 bits (137), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 50/149 (33%), Positives = 71/149 (47%), Gaps = 33/149 (22%)
Query: 72 TLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPF--LEYISLSQ 129
L+++D+ GN+LSG F I + L+ L++S N G IP LP L+Y+SL++
Sbjct: 221 ALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP-----LPLKSLQYLSLAE 275
Query: 130 NMFHGGIPSALS-KCTYLQILGLS------------------------FNDFSGAIPKE- 163
N F G IP LS C L L LS N+FSG +P +
Sbjct: 276 NKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDT 335
Query: 164 IGNVTKLKELYLVRNRLQGEIPRELSNLA 192
+ + LK L L N GE+P L+NL+
Sbjct: 336 LLKMRGLKVLDLSFNEFSGELPESLTNLS 364
Score = 54.7 bits (130), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 68/142 (47%), Gaps = 25/142 (17%)
Query: 71 HTLKYVDLRGNQLSGA-FPSFIFNKS--SLQDLDLSYNALSGEIPANICSNLPFLE---- 123
++L+ +DL N +SGA ++ + L+ L +S N +SG++ + C NL FL+
Sbjct: 148 NSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSN 207
Query: 124 ----------------YISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNV 167
++ +S N G A+S CT L++L +S N F G IP +
Sbjct: 208 NFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLP--L 265
Query: 168 TKLKELYLVRNRLQGEIPRELS 189
L+ L L N+ GEIP LS
Sbjct: 266 KSLQYLSLAENKFTGEIPDFLS 287
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 55/103 (53%), Gaps = 2/103 (1%)
Query: 61 GSIPSATFITH-TLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNL 119
G S TF + ++ ++D+ N LSG P I + L L+L +N +SG IP + +L
Sbjct: 618 GGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEV-GDL 676
Query: 120 PFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPK 162
L + LS N G IP A+S T L + LS N+ SG IP+
Sbjct: 677 RGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE 719
Score = 46.6 bits (109), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 53/217 (24%), Positives = 78/217 (35%), Gaps = 45/217 (20%)
Query: 34 NLTGTIPXXXXXXXXXXXXXXXXXXXXGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFN 93
+LTG IP G IP L + L N SG P+ + +
Sbjct: 474 DLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGD 533
Query: 94 KSSLQDLDLSYNALSGEIPA-------NICSNL----------------------PFLEY 124
SL LDL+ N +G IPA I +N LE+
Sbjct: 534 CRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEF 593
Query: 125 ----------------ISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVT 168
+++ ++ G + L +S+N SG IPKEIG++
Sbjct: 594 QGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMP 653
Query: 169 KLKELYLVRNRLQGEIPRELSNLAELELMSLFDNELQ 205
L L L N + G IP E+ +L L ++ L N+L
Sbjct: 654 YLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLD 690
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 67/163 (41%), Gaps = 56/163 (34%)
Query: 95 SSLQDLDLSYNALSGEIPA----NICSNLPF----------------------------- 121
+SL LDLS N+LSG + CS L F
Sbjct: 97 ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLS 156
Query: 122 --------------------LEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIP 161
L+++++S N G + +S+C L+ L +S N+FS IP
Sbjct: 157 ANSISGANVVGWVLSDGCGELKHLAISGNKISGDV--DVSRCVNLEFLDVSSNNFSTGIP 214
Query: 162 KEIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFDNEL 204
+G+ + L+ L + N+L G+ R +S EL+L+++ N+
Sbjct: 215 F-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQF 256
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 74.3 bits (181), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 61/188 (32%), Positives = 85/188 (45%), Gaps = 10/188 (5%)
Query: 4 WNTSSPVCN--WTGVTCDV--HSHRVTVFNVSGLNLTGTIPXXXXXXXXXXXX---XXXX 56
W ++ CN W GV CD ++RV ++SGLNL P
Sbjct: 27 WLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGI 86
Query: 57 XXXXGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANIC 116
G IP A L Y+ + +SGA P F+ +L LD SYNALSG +P +I
Sbjct: 87 NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSI- 145
Query: 117 SNLPFLEYISLSQNMFHGGIPSALSKCTYL-QILGLSFNDFSGAIPKEIGNVTKLKELYL 175
S+LP L I+ N G IP + + L + +S N +G IP N+ L + L
Sbjct: 146 SSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDL 204
Query: 176 VRNRLQGE 183
RN L+G+
Sbjct: 205 SRNMLEGD 212
Score = 44.3 bits (103), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 57/120 (47%), Gaps = 6/120 (5%)
Query: 61 GSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEI-PANICSNL 119
G IP TF L +VDL N L G + + Q + L+ N+L+ ++ + NL
Sbjct: 188 GKIP-PTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNL 246
Query: 120 PFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNR 179
L+ L N +G +P L++ +L L +SFN+ G IP+ GN+ + N+
Sbjct: 247 NGLD---LRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK 302
Score = 33.5 bits (75), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 4/76 (5%)
Query: 69 ITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLS 128
++ L +DLR N++ G P + L L++S+N L GEIP NL + + +
Sbjct: 242 LSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG--GNLQRFDVSAYA 299
Query: 129 QNMFHGGIPSALSKCT 144
N G P L CT
Sbjct: 300 NNKCLCGSP--LPACT 313
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 63/131 (48%), Gaps = 3/131 (2%)
Query: 73 LKYVDLRGNQLSGAFPSFIFNK-SSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNM 131
L Y+ L GNQL + P+ +F+K ++L++L L N L +P + L L Y++L+ N
Sbjct: 87 LTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVENQLQS-LPDGVFDKLTNLTYLNLAHNQ 144
Query: 132 FHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNL 191
K T L L LS+N +T+LK+L L +N+L+ L
Sbjct: 145 LQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRL 204
Query: 192 AELELMSLFDN 202
L+ + L DN
Sbjct: 205 TSLQYIWLHDN 215
Score = 37.0 bits (84), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 40/87 (45%), Gaps = 2/87 (2%)
Query: 119 LPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRN 178
LP + Y++L N H SAL + T L L L+ N +T LKEL LV N
Sbjct: 62 LPNVRYLALGGNKLHD--ISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVEN 119
Query: 179 RLQGEIPRELSNLAELELMSLFDNELQ 205
+LQ L L ++L N+LQ
Sbjct: 120 QLQSLPDGVFDKLTNLTYLNLAHNQLQ 146
Score = 35.4 bits (80), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 66/139 (47%), Gaps = 15/139 (10%)
Query: 73 LKYVDLRGNQLSGAFPSFIFNKSSLQDL-DLSYNALSG----EIPANICSNLPFLEYISL 127
++Y+ L GN+L + S+L++L +L+Y L+G +P + L L+ + L
Sbjct: 65 VRYLALGGNKL--------HDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVL 116
Query: 128 SQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEI-GNVTKLKELYLVRNRLQGEIPR 186
+N K T L L L+ N ++PK + +T L EL L N+LQ
Sbjct: 117 VENQLQSLPDGVFDKLTNLTYLNLAHNQLQ-SLPKGVFDKLTNLTELDLSYNQLQSLPEG 175
Query: 187 ELSNLAELELMSLFDNELQ 205
L +L+ + L+ N+L+
Sbjct: 176 VFDKLTQLKDLRLYQNQLK 194
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 43.9 bits (102), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 65/142 (45%), Gaps = 5/142 (3%)
Query: 62 SIPSATFITHTLKYVDLRGNQLSGAFPSFIFNK-SSLQDLDLSYNALSGEIPANICSNLP 120
S+P T I Y+DL N L + P+ +F++ +SL L L N L +P + + L
Sbjct: 21 SVP--TGIPAQTTYLDLETNSLK-SLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLT 76
Query: 121 FLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRL 180
L Y++LS N K T L+ L L+ N +T+LK+L L +N+L
Sbjct: 77 SLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQL 136
Query: 181 QGEIPRELSNLAELELMSLFDN 202
+ L L+ + L DN
Sbjct: 137 KSVPDGVFDRLTSLQYIWLHDN 158
Score = 34.7 bits (78), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 45/106 (42%), Gaps = 1/106 (0%)
Query: 100 LDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGA 159
LDL N+L +P + L L + L N +K T L L LS N
Sbjct: 33 LDLETNSLK-SLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSL 91
Query: 160 IPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFDNELQ 205
+T+LKEL L N+LQ L +L+ + L+ N+L+
Sbjct: 92 PNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLK 137
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 43.1 bits (100), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 70/147 (47%), Gaps = 6/147 (4%)
Query: 62 SIPSATFITHT-LKYVDLRGNQLSGAFPSFIFNK-SSLQDLDLSYNALSGEIPANICSNL 119
S+PS F T L+ + L N+L P+ IF + +L+ L ++ N L +P + L
Sbjct: 51 SLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQA-LPIGVFDQL 108
Query: 120 PFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEI-GNVTKLKELYLVRN 178
L + L +N P T L L L +N+ ++PK + +T LKEL L N
Sbjct: 109 VNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNN 167
Query: 179 RLQGEIPRELSNLAELELMSLFDNELQ 205
+L+ L EL+ + L +N+L+
Sbjct: 168 QLKRVPEGAFDKLTELKTLKLDNNQLK 194
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 37/74 (50%), Gaps = 8/74 (10%)
Query: 135 GIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQ---GEIPRELSNL 191
IPS + T + L L N S K +TKL+ LYL N+LQ I +EL N
Sbjct: 30 AIPSNIPADT--KKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKN- 86
Query: 192 AELELMSLFDNELQ 205
LE + + DN+LQ
Sbjct: 87 --LETLWVTDNKLQ 98
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 65/132 (49%), Gaps = 5/132 (3%)
Query: 73 LKYVDLRGNQLSGAFPSFIFNK--SSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQN 130
L+ + L+ N L F + K SSL+ LD+S N+L+ C+ + ++LS N
Sbjct: 379 LQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSN 438
Query: 131 MFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSN 190
M G + L +++L L N+ +IPK++ ++ L+EL + N+L+
Sbjct: 439 MLTGSVFRCLPP--KVKVLDLH-NNRIMSIPKDVTHLQALQELNVASNQLKSVPDGVFDR 495
Query: 191 LAELELMSLFDN 202
L L+ + L DN
Sbjct: 496 LTSLQYIWLHDN 507
>pdb|1D0B|A Chain A, Internalin B Leucine Rich Repeat Domain
Length = 213
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 6/85 (7%)
Query: 119 LPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRN 178
LP LE + L N + LS+ T L L L N S +P + +TKL+ LYL +N
Sbjct: 128 LPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN 183
Query: 179 RLQGEIPRELSNLAELELMSLFDNE 203
+ R L+ L L+++ LF E
Sbjct: 184 HISD--LRALAGLKNLDVLELFSQE 206
>pdb|1OTM|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 6/85 (7%)
Query: 119 LPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRN 178
LP LE + L N + LS+ T L L L N S +P + +TKL+ LYL +N
Sbjct: 151 LPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN 206
Query: 179 RLQGEIPRELSNLAELELMSLFDNE 203
+ R L+ L L+++ LF E
Sbjct: 207 HISD--LRALAGLKNLDVLELFSQE 229
>pdb|1OTN|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 6/85 (7%)
Query: 119 LPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRN 178
LP LE + L N + LS+ T L L L N S +P + +TKL+ LYL +N
Sbjct: 151 LPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN 206
Query: 179 RLQGEIPRELSNLAELELMSLFDNE 203
+ R L+ L L+++ LF E
Sbjct: 207 HISD--LRALAGLKNLDVLELFSQE 229
>pdb|1OTO|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 6/85 (7%)
Query: 119 LPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRN 178
LP LE + L N + LS+ T L L L N S +P + +TKL+ LYL +N
Sbjct: 151 LPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN 206
Query: 179 RLQGEIPRELSNLAELELMSLFDNE 203
+ R L+ L L+++ LF E
Sbjct: 207 HISD--LRALAGLKNLDVLELFSQE 229
>pdb|2Y5Q|A Chain A, Listeria Monocytogenes Inlb (Internalin B) Residues 36-392
Length = 362
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 43/86 (50%), Gaps = 6/86 (6%)
Query: 118 NLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVR 177
+LP LE + L N + LS+ T L L L N S +P + +TKL+ LYL +
Sbjct: 132 HLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSK 187
Query: 178 NRLQGEIPRELSNLAELELMSLFDNE 203
N + R L+ L L+++ LF E
Sbjct: 188 NHISDL--RALAGLKNLDVLELFSQE 211
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 40/87 (45%), Gaps = 2/87 (2%)
Query: 119 LPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRN 178
LP + Y++L N H SAL + T L L L+ N +T LKEL LV N
Sbjct: 62 LPNVRYLALGGNKLHD--ISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVEN 119
Query: 179 RLQGEIPRELSNLAELELMSLFDNELQ 205
+LQ L L + L+ N+LQ
Sbjct: 120 QLQSLPDGVFDKLTNLTYLYLYHNQLQ 146
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 51/110 (46%), Gaps = 3/110 (2%)
Query: 73 LKYVDLRGNQLSGAFPSFIFNK-SSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNM 131
L Y+ L GNQL + P+ +F+K ++L++L L N L +P + L L Y+ L N
Sbjct: 87 LTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVENQLQS-LPDGVFDKLTNLTYLYLYHNQ 144
Query: 132 FHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQ 181
K T L L L N +T+LK+L L N+L+
Sbjct: 145 LQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLK 194
Score = 33.5 bits (75), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 65/139 (46%), Gaps = 15/139 (10%)
Query: 73 LKYVDLRGNQLSGAFPSFIFNKSSLQDL-DLSYNALSG----EIPANICSNLPFLEYISL 127
++Y+ L GN+L + S+L++L +L+Y L+G +P + L L+ + L
Sbjct: 65 VRYLALGGNKL--------HDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVL 116
Query: 128 SQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEI-GNVTKLKELYLVRNRLQGEIPR 186
+N K T L L L N ++PK + +T L L L N+LQ
Sbjct: 117 VENQLQSLPDGVFDKLTNLTYLYLYHNQLQ-SLPKGVFDKLTNLTRLDLDNNQLQSLPEG 175
Query: 187 ELSNLAELELMSLFDNELQ 205
L +L+ +SL DN+L+
Sbjct: 176 VFDKLTQLKQLSLNDNQLK 194
>pdb|4AW4|A Chain A, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|B Chain B, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|C Chain C, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
Length = 311
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 6/85 (7%)
Query: 119 LPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRN 178
LP LE + L N + LS+ T L L L N S +P + +TKL+ LYL +N
Sbjct: 153 LPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN 208
Query: 179 RLQGEIPRELSNLAELELMSLFDNE 203
+ R L+ L L+++ LF E
Sbjct: 209 HISDL--RALAGLKNLDVLELFSQE 231
>pdb|1H6T|A Chain A, Internalin B: Crystal Structure Of Fused N-Terminal
Domains
Length = 291
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 6/85 (7%)
Query: 119 LPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRN 178
LP LE + L N + LS+ T L L L N S +P + +TKL+ LYL +N
Sbjct: 133 LPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN 188
Query: 179 RLQGEIPRELSNLAELELMSLFDNE 203
+ R L+ L L+++ LF E
Sbjct: 189 HISDL--RALAGLKNLDVLELFSQE 211
>pdb|1M9S|A Chain A, Crystal Structure Of Internalin B (Inlb), A Listeria
Monocytogenes Virulence Protein Containing Sh3-Like
Domains
Length = 605
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 43/86 (50%), Gaps = 6/86 (6%)
Query: 118 NLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVR 177
+LP LE + L N + LS+ T L L L N S +P + +TKL+ LYL +
Sbjct: 129 HLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSK 184
Query: 178 NRLQGEIPRELSNLAELELMSLFDNE 203
N + R L+ L L+++ LF E
Sbjct: 185 NHISD--LRALAGLKNLDVLELFSQE 208
>pdb|2UZX|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZX|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZY|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2UZY|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2WQU|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|C Chain C, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|D Chain D, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|E Chain E, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|F Chain F, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQV|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
pdb|2WQV|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
Length = 289
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 6/85 (7%)
Query: 119 LPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRN 178
LP LE + L N + LS+ T L L L N S +P + +TKL+ LYL +N
Sbjct: 131 LPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN 186
Query: 179 RLQGEIPRELSNLAELELMSLFDNE 203
+ R L+ L L+++ LF E
Sbjct: 187 HISD--LRALAGLKNLDVLELFSQE 209
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 35/69 (50%)
Query: 136 IPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELE 195
+P LS +L ++ LS N S + N+T+L L L NRL+ PR L L
Sbjct: 46 VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLR 105
Query: 196 LMSLFDNEL 204
L+SL N++
Sbjct: 106 LLSLHGNDI 114
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 36.2 bits (82), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 49/114 (42%)
Query: 73 LKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMF 132
L Y+D+ AF SSL+ L ++ N+ +I + L L ++ LSQ
Sbjct: 423 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL 482
Query: 133 HGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPR 186
P+A + + LQ+L ++ N +T L++++L N PR
Sbjct: 483 EQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536
>pdb|2WQX|A Chain A, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQX|B Chain B, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
Length = 289
Score = 35.8 bits (81), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 40/85 (47%), Gaps = 6/85 (7%)
Query: 119 LPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRN 178
LP LE + L N + LS+ T L L L N +P + +TKL+ LYL +N
Sbjct: 131 LPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQIRRIVP--LARLTKLQNLYLSKN 186
Query: 179 RLQGEIPRELSNLAELELMSLFDNE 203
+ R L L L+++ LF E
Sbjct: 187 HISD--LRALRGLKNLDVLELFSQE 209
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 35.4 bits (80), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 58/144 (40%), Gaps = 3/144 (2%)
Query: 62 SIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPF 121
S+PS I + +DL+ L+ + + L L+L YN L + A + +L
Sbjct: 28 SVPSG--IPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTE 84
Query: 122 LEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQ 181
L + L+ N T L L L N +TKLKEL L N+LQ
Sbjct: 85 LGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ 144
Query: 182 GEIPRELSNLAELELMSLFDNELQ 205
L L+ +SL N+LQ
Sbjct: 145 SIPAGAFDKLTNLQTLSLSTNQLQ 168
Score = 35.0 bits (79), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 47/99 (47%), Gaps = 4/99 (4%)
Query: 61 GSIPSATFITHT-LKYVDLRGNQLSGAFPSFIFNK-SSLQDLDLSYNALSGEIPANICSN 118
S+P F T L + L GNQL + PS +F++ + L++L L+ N L IPA
Sbjct: 96 ASLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDK 153
Query: 119 LPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFS 157
L L+ +SLS N A + LQ + L N F
Sbjct: 154 LTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFD 192
Score = 34.3 bits (77), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 61/144 (42%), Gaps = 2/144 (1%)
Query: 61 GSIPSATFITHT-LKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNL 119
++ ATF T L +++L NQL + + L L L+ N L+ +P + +L
Sbjct: 48 ATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA-SLPLGVFDHL 106
Query: 120 PFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNR 179
L+ + L N + T L+ L L+ N +T L+ L L N+
Sbjct: 107 TQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQ 166
Query: 180 LQGEIPRELSNLAELELMSLFDNE 203
LQ L +L+ ++LF N+
Sbjct: 167 LQSVPHGAFDRLGKLQTITLFGNQ 190
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 35.4 bits (80), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 58/144 (40%), Gaps = 3/144 (2%)
Query: 62 SIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPF 121
S+PS I + +DL+ L+ + + L L+L YN L + A + +L
Sbjct: 28 SVPSG--IPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTE 84
Query: 122 LEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQ 181
L + L+ N T L L L N +TKLKEL L N+LQ
Sbjct: 85 LGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ 144
Query: 182 GEIPRELSNLAELELMSLFDNELQ 205
L L+ +SL N+LQ
Sbjct: 145 SIPAGAFDKLTNLQTLSLSTNQLQ 168
Score = 35.0 bits (79), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 47/98 (47%), Gaps = 4/98 (4%)
Query: 61 GSIPSATFITHT-LKYVDLRGNQLSGAFPSFIFNK-SSLQDLDLSYNALSGEIPANICSN 118
S+P F T L + L GNQL + PS +F++ + L++L L+ N L IPA
Sbjct: 96 ASLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDK 153
Query: 119 LPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDF 156
L L+ +SLS N A + LQ + L N F
Sbjct: 154 LTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQF 191
Score = 34.3 bits (77), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 61/144 (42%), Gaps = 2/144 (1%)
Query: 61 GSIPSATFITHT-LKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNL 119
++ ATF T L +++L NQL + + L L L+ N L+ +P + +L
Sbjct: 48 ATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA-SLPLGVFDHL 106
Query: 120 PFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNR 179
L+ + L N + T L+ L L+ N +T L+ L L N+
Sbjct: 107 TQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQ 166
Query: 180 LQGEIPRELSNLAELELMSLFDNE 203
LQ L +L+ ++LF N+
Sbjct: 167 LQSVPHGAFDRLGKLQTITLFGNQ 190
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 34.3 bits (77), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Query: 119 LPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRN 178
LP L + LS N +P L +L +SFN + + + +L+ELYL N
Sbjct: 76 LPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN 134
Query: 179 RLQGEIPRELSNLAELELMSLFDNEL 204
L+ P L+ +LE +SL +N+L
Sbjct: 135 ELKTLPPGLLTPTPKLEKLSLANNQL 160
Score = 28.5 bits (62), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 73 LKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMF 132
L+ + L+GN+L P + L+ L L+ N L+ E+PA + + L L+ + L +N
Sbjct: 126 LQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT-ELPAGLLNGLENLDTLLLQENSL 184
Query: 133 H 133
+
Sbjct: 185 Y 185
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 34.3 bits (77), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Query: 119 LPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRN 178
LP L + LS N +P L +L +SFN + + + +L+ELYL N
Sbjct: 76 LPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN 134
Query: 179 RLQGEIPRELSNLAELELMSLFDNEL 204
L+ P L+ +LE +SL +N+L
Sbjct: 135 ELKTLPPGLLTPTPKLEKLSLANNQL 160
Score = 28.5 bits (62), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 73 LKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMF 132
L+ + L+GN+L P + L+ L L+ N L+ E+PA + + L L+ + L +N
Sbjct: 126 LQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT-ELPAGLLNGLENLDTLLLQENSL 184
Query: 133 H 133
+
Sbjct: 185 Y 185
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 34.3 bits (77), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Query: 119 LPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRN 178
LP L + LS N +P L +L +SFN + + + +L+ELYL N
Sbjct: 76 LPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN 134
Query: 179 RLQGEIPRELSNLAELELMSLFDNEL 204
L+ P L+ +LE +SL +N+L
Sbjct: 135 ELKTLPPGLLTPTPKLEKLSLANNQL 160
Score = 28.5 bits (62), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 73 LKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMF 132
L+ + L+GN+L P + L+ L L+ N L+ E+PA + + L L+ + L +N
Sbjct: 126 LQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT-ELPAGLLNGLENLDTLLLQENSL 184
Query: 133 H 133
+
Sbjct: 185 Y 185
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 34.3 bits (77), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Query: 119 LPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRN 178
LP L + LS N +P L +L +SFN + + + +L+ELYL N
Sbjct: 76 LPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN 134
Query: 179 RLQGEIPRELSNLAELELMSLFDNEL 204
L+ P L+ +LE +SL +N+L
Sbjct: 135 ELKTLPPGLLTPTPKLEKLSLANNQL 160
Score = 28.5 bits (62), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 73 LKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMF 132
L+ + L+GN+L P + L+ L L+ N L+ E+PA + + L L+ + L +N
Sbjct: 126 LQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT-ELPAGLLNGLENLDTLLLQENSL 184
Query: 133 H 133
+
Sbjct: 185 Y 185
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 34.3 bits (77), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Query: 119 LPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRN 178
LP L + LS N +P L +L +SFN + + + +L+ELYL N
Sbjct: 76 LPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN 134
Query: 179 RLQGEIPRELSNLAELELMSLFDNEL 204
L+ P L+ +LE +SL +N+L
Sbjct: 135 ELKTLPPGLLTPTPKLEKLSLANNDL 160
Score = 28.1 bits (61), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 73 LKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMF 132
L+ + L+GN+L P + L+ L L+ N L+ E+PA + + L L+ + L +N
Sbjct: 126 LQELYLKGNELKTLPPGLLTPTPKLEKLSLANNDLT-ELPAGLLNGLENLDTLLLQENSL 184
Query: 133 H 133
+
Sbjct: 185 Y 185
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 33.9 bits (76), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 40/84 (47%)
Query: 73 LKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMF 132
L Y+D+ AF SSL+ L ++ N+ +I + L L ++ LSQ
Sbjct: 447 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL 506
Query: 133 HGGIPSALSKCTYLQILGLSFNDF 156
P+A + + LQ+L +S N+F
Sbjct: 507 EQLSPTAFNSLSSLQVLNMSHNNF 530
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 33.9 bits (76), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 40/84 (47%)
Query: 73 LKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMF 132
L Y+D+ AF SSL+ L ++ N+ +I + L L ++ LSQ
Sbjct: 423 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL 482
Query: 133 HGGIPSALSKCTYLQILGLSFNDF 156
P+A + + LQ+L +S N+F
Sbjct: 483 EQLSPTAFNSLSSLQVLNMSHNNF 506
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 33.9 bits (76), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 52/98 (53%), Gaps = 3/98 (3%)
Query: 96 SLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHG-GIPSALSKCTYLQILGL-SF 153
SL+ LDLSYN LS + ++ L L +++L N + G S S T LQIL + +
Sbjct: 101 SLEHLDLSYNYLSN-LSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNM 159
Query: 154 NDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNL 191
+ F+ K+ +T L+EL + + LQ P+ L ++
Sbjct: 160 DTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSI 197
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 33.9 bits (76), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 40/84 (47%)
Query: 73 LKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMF 132
L Y+D+ AF SSL+ L ++ N+ +I + L L ++ LSQ
Sbjct: 128 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL 187
Query: 133 HGGIPSALSKCTYLQILGLSFNDF 156
P+A + + LQ+L +S N+F
Sbjct: 188 EQLSPTAFNSLSSLQVLNMSHNNF 211
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 33.9 bits (76), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 53/112 (47%), Gaps = 5/112 (4%)
Query: 73 LKYVDLRGNQLS--GAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQN 130
L+ + L+ NQL SLQ LD+S N++S + CS L +++S N
Sbjct: 350 LETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSN 409
Query: 131 MFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQG 182
+ I L +++L L N +IPK++ + L+EL + N+L+
Sbjct: 410 ILTDTIFRCLP--PRIKVLDLHSNKI-KSIPKQVVKLEALQELNVASNQLKS 458
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 33.5 bits (75), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 41/86 (47%), Gaps = 1/86 (1%)
Query: 119 LPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRN 178
LP L + LS N +P L +L +SFN + + + +L+ELYL N
Sbjct: 77 LPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN 135
Query: 179 RLQGEIPRELSNLAELELMSLFDNEL 204
L+ P L+ +LE +SL +N L
Sbjct: 136 ELKTLPPGLLTPTPKLEKLSLANNNL 161
Score = 28.1 bits (61), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 73 LKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMF 132
L+ + L+GN+L P + L+ L L+ N L+ E+PA + + L L+ + L +N
Sbjct: 127 LQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSL 185
Query: 133 H 133
+
Sbjct: 186 Y 186
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 33.5 bits (75), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 81 NQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFH 133
NQL G P+F ++ L L+L+YN ++ EIPAN C +E +S + N
Sbjct: 340 NQLEGKLPAF-GSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK 390
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 33.5 bits (75), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 41/86 (47%), Gaps = 1/86 (1%)
Query: 119 LPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRN 178
LP L + LS N +P L +L +SFN + + + +L+ELYL N
Sbjct: 76 LPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN 134
Query: 179 RLQGEIPRELSNLAELELMSLFDNEL 204
L+ P L+ +LE +SL +N L
Sbjct: 135 ELKTLPPGLLTPTPKLEKLSLANNNL 160
Score = 28.1 bits (61), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 73 LKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMF 132
L+ + L+GN+L P + L+ L L+ N L+ E+PA + + L L+ + L +N
Sbjct: 126 LQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSL 184
Query: 133 H 133
+
Sbjct: 185 Y 185
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 33.5 bits (75), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 41/86 (47%), Gaps = 1/86 (1%)
Query: 119 LPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRN 178
LP L + LS N +P L +L +SFN + + + +L+ELYL N
Sbjct: 76 LPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN 134
Query: 179 RLQGEIPRELSNLAELELMSLFDNEL 204
L+ P L+ +LE +SL +N L
Sbjct: 135 ELKTLPPGLLTPTPKLEKLSLANNNL 160
Score = 28.1 bits (61), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 73 LKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMF 132
L+ + L+GN+L P + L+ L L+ N L+ E+PA + + L L+ + L +N
Sbjct: 126 LQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSL 184
Query: 133 H 133
+
Sbjct: 185 Y 185
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 33.5 bits (75), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 41/86 (47%), Gaps = 1/86 (1%)
Query: 119 LPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRN 178
LP L + LS N +P L +L +SFN + + + +L+ELYL N
Sbjct: 76 LPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN 134
Query: 179 RLQGEIPRELSNLAELELMSLFDNEL 204
L+ P L+ +LE +SL +N L
Sbjct: 135 ELKTLPPGLLTPTPKLEKLSLANNNL 160
Score = 28.1 bits (61), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 73 LKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMF 132
L+ + L+GN+L P + L+ L L+ N L+ E+PA + + L L+ + L +N
Sbjct: 126 LQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSL 184
Query: 133 H 133
+
Sbjct: 185 Y 185
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 33.5 bits (75), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 52/98 (53%), Gaps = 3/98 (3%)
Query: 96 SLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHG-GIPSALSKCTYLQILGL-SF 153
SL+ LDLSYN LS + ++ L L +++L N + G S S T LQIL + +
Sbjct: 75 SLEHLDLSYNYLSN-LSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNM 133
Query: 154 NDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNL 191
+ F+ K+ +T L+EL + + LQ P+ L ++
Sbjct: 134 DTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSI 171
Score = 32.7 bits (73), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 59/133 (44%), Gaps = 28/133 (21%)
Query: 72 TLKYVDLRGNQLSGAFPSFIFNKS------SLQDLDLSYNALSG-EIPANICSNLPFLEY 124
+L+Y+DL N + ++ N + SLQ L L N L+ E L L
Sbjct: 335 SLEYLDLSENLM---VEEYLKNSACEDAWPSLQTLILRQNHLASLEKTGETLLTLKNLTN 391
Query: 125 ISLSQNMFHGGIPSAL---SKCTYLQILGLSFNDFSGAIPK--EIGNVT----------- 168
I +S+N FH +P K YL + + +G IPK EI +V+
Sbjct: 392 IDISKNSFHS-MPETCQWPEKMKYLNLSSTRIHSVTGCIPKTLEILDVSNNNLNLFSLNL 450
Query: 169 -KLKELYLVRNRL 180
+LKELY+ RN+L
Sbjct: 451 PQLKELYISRNKL 463
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 33.1 bits (74), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 41/86 (47%), Gaps = 1/86 (1%)
Query: 119 LPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRN 178
LP L + LS N +P L +L +SFN + + + +L+ELYL N
Sbjct: 76 LPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN 134
Query: 179 RLQGEIPRELSNLAELELMSLFDNEL 204
L+ P L+ +LE +SL +N L
Sbjct: 135 ELKTLPPGLLTPTPKLEKLSLANNNL 160
Score = 28.1 bits (61), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 73 LKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMF 132
L+ + L+GN+L P + L+ L L+ N L+ E+PA + + L L+ + L +N
Sbjct: 126 LQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSL 184
Query: 133 H 133
+
Sbjct: 185 Y 185
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 32.3 bits (72), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 64/143 (44%), Gaps = 6/143 (4%)
Query: 61 GSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLP 120
S+P+ + Y L NQ++ P + +L++L L N L G +P + +L
Sbjct: 32 ASVPAGIPTNAQILY--LHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLT 88
Query: 121 FLEYISLSQNMFHGGIPSAL-SKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNR 179
L + L N +PSA+ + +L+ L + N + +P+ I +T L L L +N+
Sbjct: 89 QLTVLDLGTNQL-TVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQ 146
Query: 180 LQGEIPRELSNLAELELMSLFDN 202
L+ L+ L LF N
Sbjct: 147 LKSIPHGAFDRLSSLTHAYLFGN 169
Score = 31.6 bits (70), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 144 TYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFDNE 203
T L +L L N + + LKEL++ N+L E+PR + L L ++L N+
Sbjct: 88 TQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQ 146
Query: 204 LQ 205
L+
Sbjct: 147 LK 148
Score = 30.8 bits (68), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 4/73 (5%)
Query: 133 HGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPREL-SNL 191
H +P+ + T QIL L N + P ++ LKELYL N+L G +P + +L
Sbjct: 31 HASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSL 87
Query: 192 AELELMSLFDNEL 204
+L ++ L N+L
Sbjct: 88 TQLTVLDLGTNQL 100
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 32.3 bits (72), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 37/87 (42%), Gaps = 1/87 (1%)
Query: 95 SSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFN 154
SS L+L N L +P + L L +SLSQN K T L IL L N
Sbjct: 28 SSATRLELESNKLQS-LPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86
Query: 155 DFSGAIPKEIGNVTKLKELYLVRNRLQ 181
+T+LKEL L N+L+
Sbjct: 87 KLQSLPNGVFDKLTQLKELALDTNQLK 113
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 42/96 (43%), Gaps = 5/96 (5%)
Query: 111 IPANICSNLPFLEYISLS-QNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTK 169
+P I S+ LE S Q++ HG K T L L LS N +TK
Sbjct: 22 VPTGIPSSATRLELESNKLQSLPHG----VFDKLTQLTKLSLSQNQIQSLPDGVFDKLTK 77
Query: 170 LKELYLVRNRLQGEIPRELSNLAELELMSLFDNELQ 205
L LYL N+LQ L +L+ ++L N+L+
Sbjct: 78 LTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLK 113
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 32.0 bits (71), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 53/112 (47%), Gaps = 7/112 (6%)
Query: 78 LRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIP 137
L GN L+ P+ I N S+L+ LDLS+N L+ +PA + S L+Y NM +P
Sbjct: 254 LNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTS-LPAELGSCFQ-LKYFYFFDNMV-TTLP 309
Query: 138 SALSKCTYLQILGLSFNDFSGAIPKEI--GNVTKLKELYLVRNRLQGEIPRE 187
LQ LG+ N K + +VT L YL NR + +P E
Sbjct: 310 WEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLI-FYLRDNRPEIPLPHE 360
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 31.6 bits (70), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Query: 120 PFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNR 179
P L + L N ++L L LGLSFN S + N L+EL+L N+
Sbjct: 192 PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNK 251
Query: 180 LQGEIPRELSNLAELELMSLFDNEL 204
L ++P L++ ++++ L +N +
Sbjct: 252 LV-KVPGGLADHKYIQVVYLHNNNI 275
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 44/87 (50%), Gaps = 2/87 (2%)
Query: 72 TLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNM 131
+L + L GN+++ + + ++L L LS+N++S + +N P L + L+ N
Sbjct: 193 SLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISA-VDNGSLANTPHLRELHLNNNK 251
Query: 132 FHGGIPSALSKCTYLQILGLSFNDFSG 158
+P L+ Y+Q++ L N+ S
Sbjct: 252 L-VKVPGGLADHKYIQVVYLHNNNISA 277
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 31.6 bits (70), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 53/110 (48%), Gaps = 3/110 (2%)
Query: 73 LKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMF 132
+K DL +++ S + + L+ L L+ N ++ +I N L L ++LSQN F
Sbjct: 277 VKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEIN-KIDDNAFWGLTHLLKLNLSQN-F 334
Query: 133 HGGIPSAL-SKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQ 181
G I S + L++L LS+N + + LKEL L N+L+
Sbjct: 335 LGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLK 384
>pdb|4HNG|A Chain A, The Crystal Structure Of A Short-Chain
DehydrogenasesREDUCTASE (WIDE Type) From Veillonella
Parvula Dsm 2008
pdb|4HNH|A Chain A, The Crystal Structure Of A Short-Chain
DehydrogenasesREDUCTASE (WIDE Type) From Veillonella
Parvula Dsm 2008 In Complex With Nadp
pdb|4HNH|B Chain B, The Crystal Structure Of A Short-Chain
DehydrogenasesREDUCTASE (WIDE Type) From Veillonella
Parvula Dsm 2008 In Complex With Nadp
Length = 221
Score = 31.6 bits (70), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 43/97 (44%), Gaps = 2/97 (2%)
Query: 65 SATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEY 124
+AT +T+T ++ L G QL P I + + ++ S+ A + + F+
Sbjct: 22 TATLLTYTDMHITLYGRQLKTRIPPEIIDHERVTVIEGSFQNPGKLEQAVTNAEVVFVGA 81
Query: 125 ISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIP 161
+ +M I ALS+ +++G+S SG P
Sbjct: 82 MESGSDM--ASIVKALSRKNIRRVIGVSMAGLSGEFP 116
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 31.6 bits (70), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Query: 120 PFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNR 179
P L + L N ++L L LGLSFN S + N L+EL+L N+
Sbjct: 192 PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNK 251
Query: 180 LQGEIPRELSNLAELELMSLFDNEL 204
L ++P L++ ++++ L +N +
Sbjct: 252 LV-KVPGGLADHKYIQVVYLHNNNI 275
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 44/87 (50%), Gaps = 2/87 (2%)
Query: 72 TLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNM 131
+L + L GN+++ + + ++L L LS+N++S + +N P L + L+ N
Sbjct: 193 SLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISA-VDNGSLANTPHLRELHLNNNK 251
Query: 132 FHGGIPSALSKCTYLQILGLSFNDFSG 158
+P L+ Y+Q++ L N+ S
Sbjct: 252 L-VKVPGGLADHKYIQVVYLHNNNISA 277
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 31.6 bits (70), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 48/122 (39%), Gaps = 31/122 (25%)
Query: 110 EIPANICSNLP-FLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVT 168
EIP +NLP + I L QN P A S L+ + LS N S P +
Sbjct: 25 EIP----TNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLR 80
Query: 169 KLKELYLVRNRLQGEIPREL-------------------------SNLAELELMSLFDNE 203
L L L N++ E+P+ L +L L L+SL+DN+
Sbjct: 81 SLNSLVLYGNKIT-ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNK 139
Query: 204 LQ 205
LQ
Sbjct: 140 LQ 141
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 31.6 bits (70), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 48/122 (39%), Gaps = 31/122 (25%)
Query: 110 EIPANICSNLP-FLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVT 168
EIP +NLP + I L QN P A S L+ + LS N S P +
Sbjct: 25 EIP----TNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLR 80
Query: 169 KLKELYLVRNRLQGEIPREL-------------------------SNLAELELMSLFDNE 203
L L L N++ E+P+ L +L L L+SL+DN+
Sbjct: 81 SLNSLVLYGNKIT-ELPKSLFEGLFSLQLLLLNANKINXLRVDAFQDLHNLNLLSLYDNK 139
Query: 204 LQ 205
LQ
Sbjct: 140 LQ 141
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 31.2 bits (69), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 59/145 (40%), Gaps = 8/145 (5%)
Query: 62 SIPSATF----ITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICS 117
S+ ATF HTL ++D G Q G P ++LQ L L NAL +P +
Sbjct: 94 SVDPATFHGLGRLHTL-HLDRCGLQELG--PGLFRGLAALQYLYLQDNALQA-LPDDTFR 149
Query: 118 NLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVR 177
+L L ++ L N A L L L N + P ++ +L LYL
Sbjct: 150 DLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFA 209
Query: 178 NRLQGEIPRELSNLAELELMSLFDN 202
N L L+ L L+ + L DN
Sbjct: 210 NNLSALPTEALAPLRALQYLRLNDN 234
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 31.2 bits (69), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 59/145 (40%), Gaps = 8/145 (5%)
Query: 62 SIPSATF----ITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICS 117
S+ ATF HTL ++D G Q G P ++LQ L L NAL +P +
Sbjct: 95 SVDPATFHGLGRLHTL-HLDRCGLQELG--PGLFRGLAALQYLYLQDNALQA-LPDDTFR 150
Query: 118 NLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVR 177
+L L ++ L N A L L L N + P ++ +L LYL
Sbjct: 151 DLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFA 210
Query: 178 NRLQGEIPRELSNLAELELMSLFDN 202
N L L+ L L+ + L DN
Sbjct: 211 NNLSALPTEALAPLRALQYLRLNDN 235
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 30.0 bits (66), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 37/84 (44%)
Query: 119 LPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRN 178
LP L + L +N G P+A +++Q L L N K + +LK L L N
Sbjct: 53 LPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDN 112
Query: 179 RLQGEIPRELSNLAELELMSLFDN 202
++ +P +L L ++L N
Sbjct: 113 QISCVMPGSFEHLNSLTSLNLASN 136
Score = 30.0 bits (66), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 2/89 (2%)
Query: 69 ITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLS 128
+ H +K ++L+ NQL+G P+ S +Q+L L N + EI + L L+ ++L
Sbjct: 53 LPHLVK-LELKRNQLTGIEPNAFEGASHIQELQLGENKIK-EISNKMFLGLHQLKTLNLY 110
Query: 129 QNMFHGGIPSALSKCTYLQILGLSFNDFS 157
N +P + L L L+ N F+
Sbjct: 111 DNQISCVMPGSFEHLNSLTSLNLASNPFN 139
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 37/80 (46%), Gaps = 3/80 (3%)
Query: 76 VDLRGNQLSGAFPSFIFNK-SSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHG 134
++L NQL P+ F + S L LD+ +N +S P +C LP L+ ++L N
Sbjct: 30 LNLTHNQLR-RLPAANFTRYSQLTSLDVGFNTISKLEPE-LCQKLPMLKVLNLQHNELSQ 87
Query: 135 GIPSALSKCTYLQILGLSFN 154
+ CT L L L N
Sbjct: 88 LSDKTFAFCTNLTELHLMSN 107
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 37/80 (46%), Gaps = 3/80 (3%)
Query: 76 VDLRGNQLSGAFPSFIFNK-SSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHG 134
++L NQL P+ F + S L LD+ +N +S P +C LP L+ ++L N
Sbjct: 40 LNLTHNQLR-RLPAANFTRYSQLTSLDVGFNTISKLEPE-LCQKLPMLKVLNLQHNELSQ 97
Query: 135 GIPSALSKCTYLQILGLSFN 154
+ CT L L L N
Sbjct: 98 LSDKTFAFCTNLTELHLMSN 117
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 28.9 bits (63), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 37/80 (46%), Gaps = 3/80 (3%)
Query: 76 VDLRGNQLSGAFPSFIFNK-SSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHG 134
++L NQL P+ F + S L LD+ +N +S P +C LP L+ ++L N
Sbjct: 35 LNLTHNQLR-RLPAANFTRYSQLTSLDVGFNTISKLEPE-LCQKLPMLKVLNLQHNELSQ 92
Query: 135 GIPSALSKCTYLQILGLSFN 154
+ CT L L L N
Sbjct: 93 LSDKTFAFCTNLTELHLMSN 112
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 28.5 bits (62), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 53/124 (42%), Gaps = 15/124 (12%)
Query: 90 FIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSAL-----SKCT 144
F+ LQ L L+ N S S P LE + L +NM + L +
Sbjct: 421 FLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLS 480
Query: 145 YLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRL----QGEIPRELSNLAELELMSLF 200
+LQ+L L+ N + P ++T L+ L L NRL ++P A LE++ +
Sbjct: 481 HLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP------ANLEILDIS 534
Query: 201 DNEL 204
N+L
Sbjct: 535 RNQL 538
Score = 27.7 bits (60), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 49/111 (44%), Gaps = 1/111 (0%)
Query: 94 KSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSF 153
+SS++ LDLS+ + + + L L+ ++L+ N + A LQ+L LS+
Sbjct: 265 RSSVRHLDLSH-GFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSY 323
Query: 154 NDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFDNEL 204
N + K+ + L +N + + L +L+ + L DN L
Sbjct: 324 NLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNAL 374
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 28.1 bits (61), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 55/122 (45%), Gaps = 26/122 (21%)
Query: 78 LRGNQLSGAFPSFIFNKSSLQDLDLSYNAL-SGEIPANICSNLPFLEYISLSQNMFHGGI 136
L+ + GA+PS LQ L LS N L S + I L L + +S+N FH +
Sbjct: 377 LKNSACKGAWPS-------LQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHP-M 428
Query: 137 PSALSKCTYLQILGLS---FNDFSGAIPK--EIGNVT------------KLKELYLVRNR 179
P + ++ L LS IP+ E+ +V+ +L+ELY+ RN+
Sbjct: 429 PDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNK 488
Query: 180 LQ 181
L+
Sbjct: 489 LK 490
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 27.7 bits (60), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 3/76 (3%)
Query: 119 LPFLEYISLSQNMFHGG---IPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYL 175
LP L++++L N F G ++L L+IL LSF D S ++ + + L
Sbjct: 448 LPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDL 507
Query: 176 VRNRLQGEIPRELSNL 191
NRL LS+L
Sbjct: 508 SHNRLTSSSIEALSHL 523
>pdb|1A5I|A Chain A, Catalytic Domain Of Vampire Bat (Desmodus Rotundus) Saliva
Plasminogen Activator In Complex With Egr-Cmk
(Glu-Gly-Arg Chloromethyl Ketone)
Length = 265
Score = 27.7 bits (60), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 26/51 (50%)
Query: 65 SATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANI 115
S+ F + LK +R S P F+FNK+ ++ + + SGEI N+
Sbjct: 158 SSPFYSEQLKEGHVRLYPSSRCAPKFLFNKTVTNNMLCAGDTRSGEIYPNV 208
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 27.7 bits (60), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 55/122 (45%), Gaps = 26/122 (21%)
Query: 78 LRGNQLSGAFPSFIFNKSSLQDLDLSYNAL-SGEIPANICSNLPFLEYISLSQNMFHGGI 136
L+ + GA+PS LQ L LS N L S + I L L + +S+N FH +
Sbjct: 351 LKNSACKGAWPS-------LQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHP-M 402
Query: 137 PSALSKCTYLQILGLS---FNDFSGAIPK--EIGNVT------------KLKELYLVRNR 179
P + ++ L LS IP+ E+ +V+ +L+ELY+ RN+
Sbjct: 403 PDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNK 462
Query: 180 LQ 181
L+
Sbjct: 463 LK 464
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 27.3 bits (59), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 53/132 (40%), Gaps = 4/132 (3%)
Query: 72 TLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLP--FLEYISLSQ 129
+L+ +DL N L P L L L+ L+ + +C L ++ +SL+
Sbjct: 172 SLRKLDLSSNPLKEFSPGCFQTIGKLFALLLNNAQLNPHLTEKLCWELSNTSIQNLSLAN 231
Query: 130 NMFHGGIPSALS--KCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRE 187
N S S K T L L LS+N+ + L+ L L N +Q PR
Sbjct: 232 NQLLATSESTFSGLKWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNIQRLSPRS 291
Query: 188 LSNLAELELMSL 199
L+ L +SL
Sbjct: 292 FYGLSNLRYLSL 303
>pdb|4AQ1|C Chain C, Structure Of The Sbsb S-Layer Protein Of Geobacillus
Stearothermophilus Pv72p2 In Complex With Nanobody Kb6
Length = 892
Score = 27.3 bits (59), Expect = 6.4, Method: Composition-based stats.
Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 64 PSATFITHTLKYVDLRGN--QLSGAFPSFIFNKSSLQDLDLSYNALSGEIP 112
P+AT + T YV++ GN Q G + SS ++D++ + ++ IP
Sbjct: 650 PTATTLVGTNDYVEVNGNVLQFKGNDELTLLTSSSTVNVDVTADGITKRIP 700
>pdb|4AQ1|A Chain A, Structure Of The Sbsb S-Layer Protein Of Geobacillus
Stearothermophilus Pv72p2 In Complex With Nanobody Kb6
Length = 892
Score = 27.3 bits (59), Expect = 6.4, Method: Composition-based stats.
Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 64 PSATFITHTLKYVDLRGN--QLSGAFPSFIFNKSSLQDLDLSYNALSGEIP 112
P+AT + T YV++ GN Q G + SS ++D++ + ++ IP
Sbjct: 650 PTATTLVGTNDYVEVNGNVLQFKGNDELTLLTSSSTVNVDVTADGITKRIP 700
>pdb|3TB9|A Chain A, Structure Of Yeast Ribonucleotide Reductase 1 Q288a With
Amppnp And Cdp
pdb|3TBA|A Chain A, Structure Of Yeast Ribonucleotide Reductase 1 Q288a With
Dgtp And Adp
Length = 888
Score = 26.9 bits (58), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Query: 61 GSIPSATFITHTLKYVDLRGNQLSGAFPSFI--FNKSSLQDLDLSYNALSGEIPAN 114
G IP +T +YVD GN+ GAF ++ ++ +D+ N EI A
Sbjct: 271 GLIPMIRVFNNTARYVDAGGNKRPGAFALYLEPWHADIFDFIDIRKNHGKEEIRAR 326
>pdb|3S8A|A Chain A, Structure Of Yeast Ribonucleotide Reductase R293a With
Dgtp
pdb|3S8C|A Chain A, Structure Of Yeast Ribonucleotide Reductase 1 R293a With
Amppnp And Cdp
Length = 888
Score = 26.9 bits (58), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Query: 61 GSIPSATFITHTLKYVDLRGNQLSGAFPSFI--FNKSSLQDLDLSYNALSGEIPAN 114
G IP +T +YVD GN+ GAF ++ ++ +D+ N EI A
Sbjct: 271 GLIPMIRVFNNTARYVDQGGNKAPGAFALYLEPWHADIFDFIDIRKNHGKEEIRAR 326
>pdb|1ZYZ|A Chain A, Structures Of Yeast Ribonucloetide Reductase I
pdb|1ZYZ|B Chain B, Structures Of Yeast Ribonucloetide Reductase I
pdb|1ZZD|A Chain A, Structures Of Yeast Ribonucleotide Reductase I
pdb|2CVS|A Chain A, Structures Of Yeast Ribonucleotide Reductase I
pdb|2CVT|A Chain A, Structures Of Yeast Ribonucleotide Reductase I
pdb|2CVU|A Chain A, Structures Of Yeast Ribonucleotide Reductase I
pdb|2CVV|A Chain A, Structures Of Yeast Ribonucleotide Reductase I
pdb|2CVW|A Chain A, Structures Of Yeast Ribonucleotide Reductase I
pdb|2CVX|A Chain A, Structures Of Yeast Ribonucleotide Reductase I
pdb|2CVY|A Chain A, Structures Of Yeast Ribonucleotide Reductase I
pdb|2EUD|A Chain A, Structures Of Yeast Ribonucleotide Reductase I Complexed
With Ligands And Subunit Peptides
pdb|2ZLF|A Chain A, The Structural Basis For Peptidomimetic Inhibition Of
Eukaryotic Ribonucleotide Reductase
pdb|2ZLG|A Chain A, The Structual Basis For Peptidomimetic Inhibition Of
Eukaryotic Ribonucleotide Reductase
pdb|3K8T|A Chain A, Structure Of Eukaryotic Rnr Large Subunit R1 Complexed
With Designed Adp Analog Compound
pdb|3PAW|A Chain A, Low Resolution X-Ray Crystal Structure Of Yeast Rnr1p With
Datp Bound In The A-Site
pdb|3PAW|B Chain B, Low Resolution X-Ray Crystal Structure Of Yeast Rnr1p With
Datp Bound In The A-Site
pdb|3PAW|C Chain C, Low Resolution X-Ray Crystal Structure Of Yeast Rnr1p With
Datp Bound In The A-Site
pdb|3PAW|D Chain D, Low Resolution X-Ray Crystal Structure Of Yeast Rnr1p With
Datp Bound In The A-Site
pdb|3S87|A Chain A, Structure Of Yeast Ribonucleotide Reductase 1 With Dgtp
And Adp
pdb|3S8B|A Chain A, Structure Of Yeast Ribonucleotide Reductase 1 With Amppnp
And Cdp
pdb|3RSR|A Chain A, Crystal Structure Of 5-Nitp Inhibition Of Yeast
Ribonucleotide Reductase
Length = 888
Score = 26.6 bits (57), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Query: 61 GSIPSATFITHTLKYVDLRGNQLSGAFPSFI--FNKSSLQDLDLSYNALSGEIPAN 114
G IP +T +YVD GN+ GAF ++ ++ +D+ N EI A
Sbjct: 271 GLIPMIRVFNNTARYVDQGGNKRPGAFALYLEPWHADIFDFIDIRKNHGKEEIRAR 326
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,462,625
Number of Sequences: 62578
Number of extensions: 197189
Number of successful extensions: 642
Number of sequences better than 100.0: 82
Number of HSP's better than 100.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 44
Number of HSP's that attempted gapping in prelim test: 423
Number of HSP's gapped (non-prelim): 179
length of query: 205
length of database: 14,973,337
effective HSP length: 94
effective length of query: 111
effective length of database: 9,091,005
effective search space: 1009101555
effective search space used: 1009101555
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)