Query 037027
Match_columns 205
No_of_seqs 114 out of 2287
Neff 11.0
Searched_HMMs 46136
Date Fri Mar 29 07:52:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037027.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037027hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 99.9 3.8E-24 8.3E-29 182.5 13.9 200 3-204 50-272 (968)
2 PLN00113 leucine-rich repeat r 99.9 9.2E-22 2E-26 168.0 11.8 181 22-203 139-319 (968)
3 KOG4194 Membrane glycoprotein 99.8 3.8E-20 8.2E-25 143.2 3.7 161 43-204 169-329 (873)
4 KOG4194 Membrane glycoprotein 99.8 2.8E-20 6.1E-25 143.9 2.5 187 15-202 165-351 (873)
5 KOG0617 Ras suppressor protein 99.7 6.6E-20 1.4E-24 121.8 -4.2 166 19-191 29-195 (264)
6 KOG0617 Ras suppressor protein 99.7 1.3E-19 2.8E-24 120.5 -3.9 157 43-205 29-186 (264)
7 KOG4237 Extracellular matrix p 99.6 2.2E-17 4.8E-22 122.4 -0.7 184 21-204 65-358 (498)
8 KOG0444 Cytoskeletal regulator 99.6 1.6E-16 3.5E-21 124.7 -2.3 35 169-204 269-303 (1255)
9 KOG0444 Cytoskeletal regulator 99.6 2.6E-16 5.7E-21 123.6 -1.7 162 40-205 96-258 (1255)
10 cd00116 LRR_RI Leucine-rich re 99.5 3.8E-16 8.3E-21 118.0 -1.5 184 22-205 80-291 (319)
11 KOG0472 Leucine-rich repeat pr 99.5 1.5E-16 3.2E-21 118.6 -8.3 172 24-204 138-309 (565)
12 PLN03210 Resistant to P. syrin 99.4 1.5E-12 3.2E-17 113.2 13.1 82 22-105 610-691 (1153)
13 PLN03210 Resistant to P. syrin 99.4 1.3E-12 2.9E-17 113.4 12.7 80 121-202 779-879 (1153)
14 KOG0472 Leucine-rich repeat pr 99.4 5.4E-16 1.2E-20 115.6 -8.4 171 27-205 95-288 (565)
15 cd00116 LRR_RI Leucine-rich re 99.4 1.4E-14 3.1E-19 109.5 -2.4 181 24-204 52-262 (319)
16 KOG0618 Serine/threonine phosp 99.4 1.6E-14 3.5E-19 117.3 -3.0 129 71-203 359-487 (1081)
17 KOG0618 Serine/threonine phosp 99.4 2.3E-14 5E-19 116.5 -3.6 179 21-204 239-442 (1081)
18 PRK15370 E3 ubiquitin-protein 99.3 3.7E-12 8E-17 105.2 8.7 162 24-205 200-380 (754)
19 PRK15370 E3 ubiquitin-protein 99.3 4.2E-12 9E-17 104.8 8.9 161 24-205 221-401 (754)
20 PLN03150 hypothetical protein; 99.3 9E-12 2E-16 101.8 9.4 129 3-133 391-528 (623)
21 KOG4237 Extracellular matrix p 99.3 2.6E-13 5.7E-18 101.1 -1.5 74 48-122 68-142 (498)
22 PRK15387 E3 ubiquitin-protein 99.3 2.1E-11 4.6E-16 100.5 9.2 116 72-205 343-458 (788)
23 KOG0532 Leucine-rich repeat (L 99.2 1.7E-13 3.7E-18 106.4 -5.5 168 28-205 80-247 (722)
24 COG4886 Leucine-rich repeat (L 99.2 2E-11 4.4E-16 95.0 5.3 173 23-204 116-289 (394)
25 PF14580 LRR_9: Leucine-rich r 99.1 3.5E-11 7.5E-16 82.4 3.3 124 46-174 18-146 (175)
26 PF14580 LRR_9: Leucine-rich r 99.1 5.2E-11 1.1E-15 81.5 4.0 127 68-200 16-148 (175)
27 KOG3207 Beta-tubulin folding c 99.1 6E-12 1.3E-16 95.0 -0.8 180 24-204 122-313 (505)
28 PRK15387 E3 ubiquitin-protein 99.1 6.3E-10 1.4E-14 92.0 10.4 135 27-182 205-356 (788)
29 PF13855 LRR_8: Leucine rich r 99.1 1E-10 2.2E-15 66.3 4.1 61 144-204 1-61 (61)
30 PLN03150 hypothetical protein; 99.1 2.9E-10 6.4E-15 93.1 6.5 106 97-203 420-526 (623)
31 PF13855 LRR_8: Leucine rich r 98.9 1.9E-09 4.1E-14 61.1 4.9 59 24-82 2-60 (61)
32 KOG3207 Beta-tubulin folding c 98.9 8.2E-11 1.8E-15 89.0 -1.9 187 18-205 141-339 (505)
33 KOG0532 Leucine-rich repeat (L 98.9 4.7E-11 1E-15 93.2 -3.3 146 28-182 103-248 (722)
34 KOG1909 Ran GTPase-activating 98.9 1.4E-10 2.9E-15 85.5 -1.3 182 23-205 30-254 (382)
35 KOG1259 Nischarin, modulator o 98.9 1.3E-10 2.8E-15 84.5 -1.9 129 47-182 284-413 (490)
36 COG4886 Leucine-rich repeat (L 98.9 1.3E-09 2.9E-14 84.9 3.3 156 43-205 112-268 (394)
37 KOG1909 Ran GTPase-activating 98.8 2.6E-10 5.7E-15 84.0 -2.1 182 23-204 92-310 (382)
38 KOG1259 Nischarin, modulator o 98.7 1.1E-09 2.4E-14 79.8 -1.3 128 24-158 285-413 (490)
39 KOG2120 SCF ubiquitin ligase, 98.7 4.3E-10 9.3E-15 81.6 -5.0 157 46-202 209-373 (419)
40 COG5238 RNA1 Ran GTPase-activa 98.6 8.3E-09 1.8E-13 74.2 0.2 184 21-205 28-255 (388)
41 KOG4658 Apoptotic ATPase [Sign 98.5 4.2E-08 9.1E-13 82.9 1.6 105 24-130 546-652 (889)
42 KOG0531 Protein phosphatase 1, 98.5 2.9E-08 6.4E-13 77.9 -0.2 151 44-204 92-267 (414)
43 PF12799 LRR_4: Leucine Rich r 98.3 5.5E-07 1.2E-11 47.1 3.0 36 145-181 2-37 (44)
44 KOG4658 Apoptotic ATPase [Sign 98.3 6.6E-07 1.4E-11 75.8 4.4 128 47-178 523-652 (889)
45 KOG1859 Leucine-rich repeat pr 98.3 5.6E-09 1.2E-13 84.2 -8.2 126 49-181 166-292 (1096)
46 KOG2982 Uncharacterized conser 98.2 4.9E-07 1.1E-11 66.1 1.7 160 46-205 70-262 (418)
47 KOG1859 Leucine-rich repeat pr 98.2 4.6E-08 1E-12 79.1 -3.9 102 96-204 165-266 (1096)
48 KOG0531 Protein phosphatase 1, 98.2 8.9E-08 1.9E-12 75.2 -3.2 129 45-181 70-199 (414)
49 KOG1644 U2-associated snRNP A' 98.1 5.7E-06 1.2E-10 57.2 5.2 103 73-178 44-150 (233)
50 PF13306 LRR_5: Leucine rich r 98.1 3E-05 6.5E-10 50.6 7.9 122 66-194 7-128 (129)
51 KOG3665 ZYG-1-like serine/thre 98.0 1.1E-06 2.5E-11 72.6 0.6 132 71-204 122-262 (699)
52 KOG2120 SCF ubiquitin ligase, 98.0 7E-08 1.5E-12 70.4 -6.6 157 22-178 209-373 (419)
53 KOG4579 Leucine-rich repeat (L 98.0 3.1E-07 6.7E-12 59.6 -3.1 85 94-181 52-136 (177)
54 KOG1644 U2-associated snRNP A' 97.9 2E-05 4.4E-10 54.6 4.9 102 49-153 44-149 (233)
55 PF13306 LRR_5: Leucine rich r 97.9 0.00013 2.9E-09 47.5 7.8 122 42-170 7-128 (129)
56 PF12799 LRR_4: Leucine Rich r 97.8 3.4E-05 7.4E-10 40.2 3.2 34 73-107 3-36 (44)
57 KOG4579 Leucine-rich repeat (L 97.7 1.9E-06 4.2E-11 56.0 -2.8 105 25-133 29-136 (177)
58 KOG2982 Uncharacterized conser 97.7 3.5E-06 7.5E-11 61.8 -1.8 112 43-155 41-157 (418)
59 PRK15386 type III secretion pr 97.4 0.0015 3.1E-08 51.0 9.0 133 23-178 52-187 (426)
60 COG5238 RNA1 Ran GTPase-activa 97.4 1.3E-05 2.9E-10 58.1 -2.3 135 22-156 91-254 (388)
61 KOG3665 ZYG-1-like serine/thre 97.4 3.2E-05 7E-10 64.3 -0.5 133 48-183 123-265 (699)
62 KOG2739 Leucine-rich acidic nu 97.3 9.7E-05 2.1E-09 53.1 1.5 87 44-133 40-129 (260)
63 PRK15386 type III secretion pr 97.3 0.0023 4.9E-08 49.9 8.5 54 46-105 51-104 (426)
64 KOG2123 Uncharacterized conser 97.1 1.3E-05 2.8E-10 58.4 -5.1 100 94-198 18-123 (388)
65 KOG2123 Uncharacterized conser 96.8 2.4E-05 5.1E-10 57.0 -5.5 101 69-174 17-123 (388)
66 KOG2739 Leucine-rich acidic nu 96.7 0.00049 1.1E-08 49.6 0.5 107 65-174 37-149 (260)
67 KOG3864 Uncharacterized conser 96.2 0.00026 5.7E-09 49.2 -3.2 80 122-201 103-185 (221)
68 PF00560 LRR_1: Leucine Rich R 95.7 0.0055 1.2E-07 26.6 0.9 19 170-189 2-20 (22)
69 KOG4341 F-box protein containi 95.2 0.0001 2.2E-09 56.5 -8.9 179 24-202 139-356 (483)
70 KOG1947 Leucine rich repeat pr 94.9 0.0021 4.5E-08 51.5 -3.1 86 21-106 212-306 (482)
71 KOG4308 LRR-containing protein 93.9 2.5E-05 5.4E-10 62.2 -15.7 180 25-204 89-302 (478)
72 PF13504 LRR_7: Leucine rich r 93.6 0.054 1.2E-06 21.8 1.3 12 193-204 2-13 (17)
73 KOG1947 Leucine rich repeat pr 93.3 0.0059 1.3E-07 48.9 -3.4 129 70-198 187-327 (482)
74 KOG4341 F-box protein containi 93.1 0.028 6E-07 43.7 0.1 133 70-202 293-436 (483)
75 KOG3864 Uncharacterized conser 93.0 0.0062 1.3E-07 42.6 -3.1 33 73-105 103-135 (221)
76 PF13516 LRR_6: Leucine Rich r 92.4 0.023 5E-07 25.1 -0.7 16 168-183 2-17 (24)
77 PF08263 LRRNT_2: Leucine rich 92.3 0.1 2.2E-06 26.8 1.6 18 2-19 24-43 (43)
78 smart00369 LRR_TYP Leucine-ric 91.5 0.16 3.4E-06 22.8 1.6 21 168-188 2-22 (26)
79 smart00370 LRR Leucine-rich re 91.5 0.16 3.4E-06 22.8 1.6 21 168-188 2-22 (26)
80 smart00368 LRR_RI Leucine rich 85.3 0.76 1.6E-05 21.0 1.6 13 192-204 2-14 (28)
81 smart00365 LRR_SD22 Leucine-ri 84.5 0.96 2.1E-05 20.4 1.7 13 192-204 2-14 (26)
82 KOG0473 Leucine-rich repeat pr 79.0 0.041 8.9E-07 39.6 -5.8 84 94-181 41-124 (326)
83 KOG0473 Leucine-rich repeat pr 73.5 0.037 7.9E-07 39.9 -7.2 60 94-156 64-123 (326)
84 smart00367 LRR_CC Leucine-rich 69.9 3.4 7.4E-05 18.3 1.2 13 191-203 1-13 (26)
85 smart00364 LRR_BAC Leucine-ric 67.1 3.8 8.1E-05 18.5 1.0 17 168-185 2-18 (26)
86 KOG3763 mRNA export factor TAP 55.1 5.8 0.00012 32.6 0.9 64 118-181 216-283 (585)
87 KOG3763 mRNA export factor TAP 54.2 4 8.6E-05 33.5 -0.1 62 94-157 217-283 (585)
88 TIGR00864 PCC polycystin catio 22.3 54 0.0012 33.0 1.7 32 101-133 1-32 (2740)
89 smart00446 LRRcap occurring C- 21.7 35 0.00076 15.4 0.2 15 187-201 8-22 (26)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.92 E-value=3.8e-24 Score=182.54 Aligned_cols=200 Identities=43% Similarity=0.722 Sum_probs=127.3
Q ss_pred CCCCCCCCCccceeeecCCCceEEEEEecCCcccccCCCCCCCCCCCcEEEeecCcceeecCccc-cCCCCccEEEecCc
Q 037027 3 NWNTSSPVCNWTGVTCDVHSHRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSAT-FITHTLKYVDLRGN 81 (205)
Q Consensus 3 ~~~~~~~~c~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~l~~L~~L~l~~~ 81 (205)
.|....++|.|.|+.|.. ..+++.|+++++.+.+..+..|..+++|+.|++++|.+....+..+ ..+.+|++|++++|
T Consensus 50 ~w~~~~~~c~w~gv~c~~-~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n 128 (968)
T PLN00113 50 NWNSSADVCLWQGITCNN-SSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNN 128 (968)
T ss_pred CCCCCCCCCcCcceecCC-CCcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCC
Confidence 488888999999999985 3489999999999888888888889999999999888764455433 36666666666666
Q ss_pred cccc----------------------CCCccccCCCCccEEEcccccCCcccCcccccCCCCcceeeecccccccCCCCC
Q 037027 82 QLSG----------------------AFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSA 139 (205)
Q Consensus 82 ~~~~----------------------~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~ 139 (205)
.++. ..|..+..+.+|++|++++|.+.+.++..+ ..+++|++|++++|.+.+..|..
T Consensus 129 ~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~-~~l~~L~~L~L~~n~l~~~~p~~ 207 (968)
T PLN00113 129 NFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSL-TNLTSLEFLTLASNQLVGQIPRE 207 (968)
T ss_pred ccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhh-hhCcCCCeeeccCCCCcCcCChH
Confidence 5543 333334444555555555555443333333 44555555555555555444555
Q ss_pred cCCCCcceEEEeecceeecccCccccccCCceEEEeecccccccCchhccCCCCCcEEeccCCcC
Q 037027 140 LSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFDNEL 204 (205)
Q Consensus 140 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~L~~l~l~~n~l 204 (205)
+..+++|+.|++++|.+.+..|..+..+++|++|++++|.+.+.+|..+..+++|+.|++++|.+
T Consensus 208 l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l 272 (968)
T PLN00113 208 LGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKL 272 (968)
T ss_pred HcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCee
Confidence 55555555555555555555555555556666666666665555556666666666666666543
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.87 E-value=9.2e-22 Score=168.03 Aligned_cols=181 Identities=39% Similarity=0.542 Sum_probs=109.3
Q ss_pred CceEEEEEecCCcccccCCCCCCCCCCCcEEEeecCcceeecCccccCCCCccEEEecCcccccCCCccccCCCCccEEE
Q 037027 22 SHRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLD 101 (205)
Q Consensus 22 ~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 101 (205)
.++++.|++++|.+.+..|..++.+++|+.|++++|.+....+..+..+++|++|++.+|.+....|..+..+.+|++|+
T Consensus 139 l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 218 (968)
T PLN00113 139 IPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIY 218 (968)
T ss_pred cCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEE
Confidence 44566666666666656666666677777777777766555666666666777777766666555566666666666666
Q ss_pred cccccCCcccCcccccCCCCcceeeecccccccCCCCCcCCCCcceEEEeecceeecccCccccccCCceEEEeeccccc
Q 037027 102 LSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQ 181 (205)
Q Consensus 102 l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~ 181 (205)
+.+|.+.+.++..+ ..+++|+.|++++|.+.+..|..+..+++|+.|++.+|.+.+..|..+..+++|++|++++|.+.
T Consensus 219 L~~n~l~~~~p~~l-~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~ 297 (968)
T PLN00113 219 LGYNNLSGEIPYEI-GGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLS 297 (968)
T ss_pred CcCCccCCcCChhH-hcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeec
Confidence 66666654444444 55566666666666655555555555666666666666555455555555555555555555555
Q ss_pred ccCchhccCCCCCcEEeccCCc
Q 037027 182 GEIPRELSNLAELELMSLFDNE 203 (205)
Q Consensus 182 ~~~~~~l~~~~~L~~l~l~~n~ 203 (205)
+.+|..+..+++|+.|++++|.
T Consensus 298 ~~~p~~~~~l~~L~~L~l~~n~ 319 (968)
T PLN00113 298 GEIPELVIQLQNLEILHLFSNN 319 (968)
T ss_pred cCCChhHcCCCCCcEEECCCCc
Confidence 4455555555555555555544
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.79 E-value=3.8e-20 Score=143.18 Aligned_cols=161 Identities=20% Similarity=0.160 Sum_probs=75.6
Q ss_pred CCCCCCCcEEEeecCcceeecCccccCCCCccEEEecCcccccCCCccccCCCCccEEEcccccCCcccCcccccCCCCc
Q 037027 43 LGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFL 122 (205)
Q Consensus 43 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L 122 (205)
|..-.++++|++.+|+|+....+.|..+.+|-.|.+++|.++......|+++++|+.|++.+|.+. .+....|++++++
T Consensus 169 fp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~ir-ive~ltFqgL~Sl 247 (873)
T KOG4194|consen 169 FPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIR-IVEGLTFQGLPSL 247 (873)
T ss_pred CCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhcccccee-eehhhhhcCchhh
Confidence 333344555555555555445555555555555555555555333344444555555555555543 3333334444444
Q ss_pred ceeeecccccccCCCCCcCCCCcceEEEeecceeecccCccccccCCceEEEeecccccccCchhccCCCCCcEEeccCC
Q 037027 123 EYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFDN 202 (205)
Q Consensus 123 ~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~L~~l~l~~n 202 (205)
+.+.+.+|.+.......|..+.++++|+|..|++...-..++.++++|+.|+++.|.|...-++....+++|+.|+++.|
T Consensus 248 ~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N 327 (873)
T KOG4194|consen 248 QNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSN 327 (873)
T ss_pred hhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEecccc
Confidence 44444444444333333444444444444444444333444444444444444444444444444444444444444444
Q ss_pred cC
Q 037027 203 EL 204 (205)
Q Consensus 203 ~l 204 (205)
.|
T Consensus 328 ~i 329 (873)
T KOG4194|consen 328 RI 329 (873)
T ss_pred cc
Confidence 43
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.79 E-value=2.8e-20 Score=143.89 Aligned_cols=187 Identities=24% Similarity=0.197 Sum_probs=109.4
Q ss_pred eeeecCCCceEEEEEecCCcccccCCCCCCCCCCCcEEEeecCcceeecCccccCCCCccEEEecCcccccCCCccccCC
Q 037027 15 GVTCDVHSHRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNK 94 (205)
Q Consensus 15 ~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l 94 (205)
...|.....+++.|++.+|.|+......|+.+.+|..|.++.|.++-.-...|..+++|+.|++..|.+.......|..+
T Consensus 165 ~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL 244 (873)
T KOG4194|consen 165 PKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGL 244 (873)
T ss_pred cCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCc
Confidence 33455555578888888888876666777777788888888888775555566667777777777777664435555666
Q ss_pred CCccEEEcccccCCcccCcccccCCCCcceeeecccccccCCCCCcCCCCcceEEEeecceeecccCccccccCCceEEE
Q 037027 95 SSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELY 174 (205)
Q Consensus 95 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~ 174 (205)
++|+.|.+.+|.+. .+....|.++..+++|++..|++...-...+..++.|++|+++.|.+...-++.+..+++|++|+
T Consensus 245 ~Sl~nlklqrN~I~-kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~Ld 323 (873)
T KOG4194|consen 245 PSLQNLKLQRNDIS-KLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELD 323 (873)
T ss_pred hhhhhhhhhhcCcc-cccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEe
Confidence 66666666666665 44444445555555555555555433334444555555555555555444444444455555555
Q ss_pred eecccccccCchhccCCCCCcEEeccCC
Q 037027 175 LVRNRLQGEIPRELSNLAELELMSLFDN 202 (205)
Q Consensus 175 l~~~~l~~~~~~~l~~~~~L~~l~l~~n 202 (205)
|+.|++++..++.|..+..|+.|.+++|
T Consensus 324 Ls~N~i~~l~~~sf~~L~~Le~LnLs~N 351 (873)
T KOG4194|consen 324 LSSNRITRLDEGSFRVLSQLEELNLSHN 351 (873)
T ss_pred ccccccccCChhHHHHHHHhhhhccccc
Confidence 5555554433344443333333333333
No 5
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.72 E-value=6.6e-20 Score=121.84 Aligned_cols=166 Identities=34% Similarity=0.518 Sum_probs=130.7
Q ss_pred cCCCceEEEEEecCCcccccCCCCCCCCCCCcEEEeecCcceeecCccccCCCCccEEEecCcccccCCCccccCCCCcc
Q 037027 19 DVHSHRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQ 98 (205)
Q Consensus 19 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 98 (205)
...+.+++.|.++++.++ .+|+.++.+.+|+.|++.+|.++ ..|..+..+++|+.|+++.+.+. ..|..|..++.|+
T Consensus 29 Lf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~le 105 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALE 105 (264)
T ss_pred ccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhh
Confidence 345567778888888887 56667888888888888888888 57777888888888888888877 7888888888888
Q ss_pred EEEcccccCCc-ccCcccccCCCCcceeeecccccccCCCCCcCCCCcceEEEeecceeecccCccccccCCceEEEeec
Q 037027 99 DLDLSYNALSG-EIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVR 177 (205)
Q Consensus 99 ~L~l~~~~~~~-~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~ 177 (205)
.|+++.|++.. .++..+ -.+..|+.+++++|.+. .+|..+..+++|++|.+..|.+. .+|+.++.++.|++|++.+
T Consensus 106 vldltynnl~e~~lpgnf-f~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqg 182 (264)
T KOG0617|consen 106 VLDLTYNNLNENSLPGNF-FYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQG 182 (264)
T ss_pred hhhccccccccccCCcch-hHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhccc
Confidence 88888887752 344544 34677888888888876 66777888888888888888876 6788888888888899898
Q ss_pred ccccccCchhccCC
Q 037027 178 NRLQGEIPRELSNL 191 (205)
Q Consensus 178 ~~l~~~~~~~l~~~ 191 (205)
|.++ .+|..++.+
T Consensus 183 nrl~-vlppel~~l 195 (264)
T KOG0617|consen 183 NRLT-VLPPELANL 195 (264)
T ss_pred ceee-ecChhhhhh
Confidence 8888 666665543
No 6
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.71 E-value=1.3e-19 Score=120.47 Aligned_cols=157 Identities=30% Similarity=0.487 Sum_probs=142.2
Q ss_pred CCCCCCCcEEEeecCcceeecCccccCCCCccEEEecCcccccCCCccccCCCCccEEEcccccCCcccCcccccCCCCc
Q 037027 43 LGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFL 122 (205)
Q Consensus 43 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L 122 (205)
+-.+.++++|.+++|+++ ..+..+..+.+|+.|++.+++++ .+|..++.+++|+.|++..|.+. .++..+ +.++-|
T Consensus 29 Lf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgf-gs~p~l 104 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGF-GSFPAL 104 (264)
T ss_pred ccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCcccc-CCCchh
Confidence 346788999999999999 78888999999999999999998 88999999999999999999987 677766 889999
Q ss_pred ceeeeccccccc-CCCCCcCCCCcceEEEeecceeecccCccccccCCceEEEeecccccccCchhccCCCCCcEEeccC
Q 037027 123 EYISLSQNMFHG-GIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFD 201 (205)
Q Consensus 123 ~~l~l~~~~~~~-~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~L~~l~l~~ 201 (205)
+.+++.+|++.. ..|..|..++.|+.|.+++|.+. .+|..++.+++|+.|.+.+|.+- ..|+.++.+..|++|++.+
T Consensus 105 evldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqg 182 (264)
T KOG0617|consen 105 EVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQG 182 (264)
T ss_pred hhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhccc
Confidence 999999999875 57788888899999999999987 78888999999999999999988 7899999999999999999
Q ss_pred CcCC
Q 037027 202 NELQ 205 (205)
Q Consensus 202 n~l~ 205 (205)
|.++
T Consensus 183 nrl~ 186 (264)
T KOG0617|consen 183 NRLT 186 (264)
T ss_pred ceee
Confidence 9763
No 7
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.63 E-value=2.2e-17 Score=122.44 Aligned_cols=184 Identities=23% Similarity=0.220 Sum_probs=134.1
Q ss_pred CCceEEEEEecCCcccccCCCCCCCCCCCcEEEeecCcceeecCccccCCCCccEEEecC-cccccCCCcccc-------
Q 037027 21 HSHRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRG-NQLSGAFPSFIF------- 92 (205)
Q Consensus 21 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~l~------- 92 (205)
-++..+.+.|.-|.|+.+.+..|..+++|++|++++|.|....+.+|.+++.+-.|.+.+ |.|+..-...|.
T Consensus 65 LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqr 144 (498)
T KOG4237|consen 65 LPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQR 144 (498)
T ss_pred CCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHH
Confidence 345677889998999877788899999999999999999988888888888777666666 666522212221
Q ss_pred -----------------CCCCccEEEcccccCCc----------------------------------------------
Q 037027 93 -----------------NKSSLQDLDLSYNALSG---------------------------------------------- 109 (205)
Q Consensus 93 -----------------~l~~L~~L~l~~~~~~~---------------------------------------------- 109 (205)
.++++..|.+.+|.+..
T Consensus 145 LllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgar 224 (498)
T KOG4237|consen 145 LLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGAR 224 (498)
T ss_pred HhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccce
Confidence 12233333333332210
Q ss_pred ---------------------------------------ccCcccccCCCCcceeeecccccccCCCCCcCCCCcceEEE
Q 037027 110 ---------------------------------------EIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILG 150 (205)
Q Consensus 110 ---------------------------------------~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~ 150 (205)
..+...|.++++|++|++++|+++...+.+|.....++.|.
T Consensus 225 c~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~ 304 (498)
T KOG4237|consen 225 CVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELY 304 (498)
T ss_pred ecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhh
Confidence 12223356778888888888888876677788888888888
Q ss_pred eecceeecccCccccccCCceEEEeecccccccCchhccCCCCCcEEeccCCcC
Q 037027 151 LSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFDNEL 204 (205)
Q Consensus 151 l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~L~~l~l~~n~l 204 (205)
+..|++..+....|..+..|++|++.+|+|+-..|.+|..+..|.+|.+-.|++
T Consensus 305 L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~ 358 (498)
T KOG4237|consen 305 LTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPF 358 (498)
T ss_pred cCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcc
Confidence 888888766677788888888999999998877788888888888888888875
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.56 E-value=1.6e-16 Score=124.73 Aligned_cols=35 Identities=31% Similarity=0.494 Sum_probs=15.8
Q ss_pred CceEEEeecccccccCchhccCCCCCcEEeccCCcC
Q 037027 169 KLKELYLVRNRLQGEIPRELSNLAELELMSLFDNEL 204 (205)
Q Consensus 169 ~L~~l~l~~~~l~~~~~~~l~~~~~L~~l~l~~n~l 204 (205)
++++|+++.|+++ .+|.++..++.|+.|++.+|++
T Consensus 269 ~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL 303 (1255)
T KOG0444|consen 269 NLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKL 303 (1255)
T ss_pred hhhhhccccchhc-cchHHHhhhHHHHHHHhccCcc
Confidence 3333344444443 4444444555555555554443
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.55 E-value=2.6e-16 Score=123.56 Aligned_cols=162 Identities=27% Similarity=0.366 Sum_probs=76.7
Q ss_pred CCCCCCCCCCcEEEeecCcceeecCccccCCCCccEEEecCcccccCCCccccCCCCccEEEcccccCCcccCcccccCC
Q 037027 40 PSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNL 119 (205)
Q Consensus 40 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 119 (205)
|..+-++..|+.|++++|.+. -.|..+...+++-+|++++|++..+....+.++..|-+|++++|.+. .+|... +.+
T Consensus 96 P~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~-RRL 172 (1255)
T KOG0444|consen 96 PTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE-MLPPQI-RRL 172 (1255)
T ss_pred Cchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh-hcCHHH-HHH
Confidence 333444444555555555444 23333444444445555555544221122223444444455555444 444433 334
Q ss_pred CCcceeeecccccccCCCCCcCCCCcceEEEeeccee-ecccCccccccCCceEEEeecccccccCchhccCCCCCcEEe
Q 037027 120 PFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDF-SGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMS 198 (205)
Q Consensus 120 ~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~-~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~L~~l~ 198 (205)
.+|++|.+++|.+.-.-..-+..+++|+.|++++.+- ...+|..+-.+.+|..++++.|.+. .+|+++..+.+|+.|+
T Consensus 173 ~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLN 251 (1255)
T KOG0444|consen 173 SMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLN 251 (1255)
T ss_pred hhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheec
Confidence 4444444444433211111122233344444444322 1244555555666666666666666 5667777777777777
Q ss_pred ccCCcCC
Q 037027 199 LFDNELQ 205 (205)
Q Consensus 199 l~~n~l~ 205 (205)
+++|+|+
T Consensus 252 LS~N~it 258 (1255)
T KOG0444|consen 252 LSGNKIT 258 (1255)
T ss_pred cCcCcee
Confidence 7776653
No 10
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.54 E-value=3.8e-16 Score=118.05 Aligned_cols=184 Identities=21% Similarity=0.218 Sum_probs=125.1
Q ss_pred CceEEEEEecCCcccccCCCCCCCCC---CCcEEEeecCccee----ecCccccCC-CCccEEEecCccccc----CCCc
Q 037027 22 SHRVTVFNVSGLNLTGTIPSQLGNLS---SLQSLNLSFNRLSG----SIPSATFIT-HTLKYVDLRGNQLSG----AFPS 89 (205)
Q Consensus 22 ~~~l~~l~l~~~~~~~~~~~~~~~~~---~L~~L~l~~~~~~~----~~~~~~~~l-~~L~~L~l~~~~~~~----~~~~ 89 (205)
.++++.|+++++.+....+..+..+. +|+.|++.+|.+.+ .....+..+ ++|+.|++.+|.++. ....
T Consensus 80 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~ 159 (319)
T cd00116 80 GCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAK 159 (319)
T ss_pred cCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHH
Confidence 55888889988887644444444333 48999998887762 122334455 788999999988763 2233
Q ss_pred cccCCCCccEEEcccccCCcccCccc---ccCCCCcceeeecccccccC----CCCCcCCCCcceEEEeecceeecccCc
Q 037027 90 FIFNKSSLQDLDLSYNALSGEIPANI---CSNLPFLEYISLSQNMFHGG----IPSALSKCTYLQILGLSFNDFSGAIPK 162 (205)
Q Consensus 90 ~l~~l~~L~~L~l~~~~~~~~~~~~~---~~~~~~L~~l~l~~~~~~~~----~~~~~~~~~~L~~l~l~~~~~~~~~~~ 162 (205)
.+..+.+|++|++.+|.+.+.....+ +...++|+.+++++|.+.+. +...+..+++|+.|++++|.+.+....
T Consensus 160 ~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~ 239 (319)
T cd00116 160 ALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAA 239 (319)
T ss_pred HHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHH
Confidence 44556789999999988764222222 13446899999999887632 234466778899999999987642222
Q ss_pred ccc-----ccCCceEEEeecccccc----cCchhccCCCCCcEEeccCCcCC
Q 037027 163 EIG-----NVTKLKELYLVRNRLQG----EIPRELSNLAELELMSLFDNELQ 205 (205)
Q Consensus 163 ~~~-----~~~~L~~l~l~~~~l~~----~~~~~l~~~~~L~~l~l~~n~l~ 205 (205)
.+. ..+.|+++++.+|.+++ .+.+.+..+++|+++++++|+++
T Consensus 240 ~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~ 291 (319)
T cd00116 240 ALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFG 291 (319)
T ss_pred HHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCc
Confidence 221 23789999999998873 34466667788999999999874
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.47 E-value=1.5e-16 Score=118.55 Aligned_cols=172 Identities=25% Similarity=0.346 Sum_probs=134.1
Q ss_pred eEEEEEecCCcccccCCCCCCCCCCCcEEEeecCcceeecCccccCCCCccEEEecCcccccCCCccccCCCCccEEEcc
Q 037027 24 RVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLS 103 (205)
Q Consensus 24 ~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 103 (205)
.+..++-.+++++ ..|+.+..+.++..+++.+|++....+..+ .++.|++++...|-++ ..|..++.+.+|+-|++.
T Consensus 138 ~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i-~m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~ 214 (565)
T KOG0472|consen 138 DLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHI-AMKRLKHLDCNSNLLE-TLPPELGGLESLELLYLR 214 (565)
T ss_pred hhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHHHH-HHHHHHhcccchhhhh-cCChhhcchhhhHHHHhh
Confidence 4455566666665 566666677777777777777774343333 3777888888888776 778888888889999999
Q ss_pred cccCCcccCcccccCCCCcceeeecccccccCCCCCcCCCCcceEEEeecceeecccCccccccCCceEEEeeccccccc
Q 037027 104 YNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGE 183 (205)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~ 183 (205)
+|.+. ++| ++ .++..|..++++.|.+.-...+...++.++..||+.+|++. ..|+.+.-+.+|+.++++.|.++ .
T Consensus 215 ~Nki~-~lP-ef-~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is-~ 289 (565)
T KOG0472|consen 215 RNKIR-FLP-EF-PGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-S 289 (565)
T ss_pred hcccc-cCC-CC-CccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccc-c
Confidence 99987 777 44 77888999999999886333345568889999999999887 67778878889999999999998 7
Q ss_pred CchhccCCCCCcEEeccCCcC
Q 037027 184 IPRELSNLAELELMSLFDNEL 204 (205)
Q Consensus 184 ~~~~l~~~~~L~~l~l~~n~l 204 (205)
.|..++++ +|+.|.+.|||+
T Consensus 290 Lp~sLgnl-hL~~L~leGNPl 309 (565)
T KOG0472|consen 290 LPYSLGNL-HLKFLALEGNPL 309 (565)
T ss_pred CCcccccc-eeeehhhcCCch
Confidence 78899999 999999999987
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.45 E-value=1.5e-12 Score=113.17 Aligned_cols=82 Identities=21% Similarity=0.272 Sum_probs=49.5
Q ss_pred CceEEEEEecCCcccccCCCCCCCCCCCcEEEeecCcceeecCccccCCCCccEEEecCcccccCCCccccCCCCccEEE
Q 037027 22 SHRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLD 101 (205)
Q Consensus 22 ~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 101 (205)
..+++.|++.++.+. ..++.+..+++|+.++++++......+ .+..+++|+.|++.+|......|..+..+.+|+.|+
T Consensus 610 ~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~ 687 (1153)
T PLN03210 610 PENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLD 687 (1153)
T ss_pred ccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEe
Confidence 345666666666654 455556666777777776654332232 355666777777776654445566666666666666
Q ss_pred cccc
Q 037027 102 LSYN 105 (205)
Q Consensus 102 l~~~ 105 (205)
+.+|
T Consensus 688 L~~c 691 (1153)
T PLN03210 688 MSRC 691 (1153)
T ss_pred CCCC
Confidence 6665
No 13
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.45 E-value=1.3e-12 Score=113.45 Aligned_cols=80 Identities=21% Similarity=0.284 Sum_probs=41.6
Q ss_pred CcceeeecccccccCCCCCcCCCCcceEEEeecceeecccCcccccc---------------------CCceEEEeeccc
Q 037027 121 FLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNV---------------------TKLKELYLVRNR 179 (205)
Q Consensus 121 ~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~---------------------~~L~~l~l~~~~ 179 (205)
+|+.|++++|.....+|..+..+++|+.|++.+|...+.+|... .+ +++++|++++|.
T Consensus 779 sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~ 857 (1153)
T PLN03210 779 SLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDISTNISDLNLSRTG 857 (1153)
T ss_pred cchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccccccccCEeECCCCC
Confidence 45555555554444455555666666666666553222222221 22 234445555555
Q ss_pred ccccCchhccCCCCCcEEeccCC
Q 037027 180 LQGEIPRELSNLAELELMSLFDN 202 (205)
Q Consensus 180 l~~~~~~~l~~~~~L~~l~l~~n 202 (205)
++ .+|..+..+++|+.|++.+|
T Consensus 858 i~-~iP~si~~l~~L~~L~L~~C 879 (1153)
T PLN03210 858 IE-EVPWWIEKFSNLSFLDMNGC 879 (1153)
T ss_pred Cc-cChHHHhcCCCCCEEECCCC
Confidence 54 45556666667777766664
No 14
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.42 E-value=5.4e-16 Score=115.64 Aligned_cols=171 Identities=32% Similarity=0.487 Sum_probs=121.3
Q ss_pred EEEecCCcccccCCCCCCCCCCCcEEEeecCccee----------------------ecCccccCCCCccEEEecCcccc
Q 037027 27 VFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSG----------------------SIPSATFITHTLKYVDLRGNQLS 84 (205)
Q Consensus 27 ~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~----------------------~~~~~~~~l~~L~~L~l~~~~~~ 84 (205)
.++.+++.+. ..|+.++....+..++++.|.+.. ..|.++..+.++..+++.++.+.
T Consensus 95 ~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~ 173 (565)
T KOG0472|consen 95 SLNVSHNKLS-ELPEQIGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLK 173 (565)
T ss_pred HhhcccchHh-hccHHHhhhhhhhhhhccccceeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccchh
Confidence 4455555544 455555555555555555554441 34444444445555555555555
Q ss_pred cCCCccccCCCCccEEEcccccCCcccCcccccCCCCcceeeecccccccCCCCCcCCCCcceEEEeecceeecccCccc
Q 037027 85 GAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEI 164 (205)
Q Consensus 85 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~ 164 (205)
..|+..-.+..|++++...|-+. .+|.+. +++..|..+++..|.+. +.| .|..|..|..++++.|++. .+|...
T Consensus 174 -~l~~~~i~m~~L~~ld~~~N~L~-tlP~~l-g~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~ 247 (565)
T KOG0472|consen 174 -ALPENHIAMKRLKHLDCNSNLLE-TLPPEL-GGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEH 247 (565)
T ss_pred -hCCHHHHHHHHHHhcccchhhhh-cCChhh-cchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHH
Confidence 22332223667788888888776 788888 88889999999999986 455 7888899999999999887 555544
Q ss_pred -cccCCceEEEeecccccccCchhccCCCCCcEEeccCCcCC
Q 037027 165 -GNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFDNELQ 205 (205)
Q Consensus 165 -~~~~~L~~l~l~~~~l~~~~~~~l~~~~~L~~l~l~~n~l~ 205 (205)
.+++++-.+++++|+++ ++|+.+..+.+|..||+++|.|+
T Consensus 248 ~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is 288 (565)
T KOG0472|consen 248 LKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS 288 (565)
T ss_pred hcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccc
Confidence 48899999999999999 78999999999999999999875
No 15
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.40 E-value=1.4e-14 Score=109.48 Aligned_cols=181 Identities=20% Similarity=0.163 Sum_probs=97.1
Q ss_pred eEEEEEecCCcccc------cCCCCCCCCCCCcEEEeecCcceeecCccccCCC---CccEEEecCccccc----CCCcc
Q 037027 24 RVTVFNVSGLNLTG------TIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITH---TLKYVDLRGNQLSG----AFPSF 90 (205)
Q Consensus 24 ~l~~l~l~~~~~~~------~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~---~L~~L~l~~~~~~~----~~~~~ 90 (205)
.++.++++++.+.+ ..+..++.+++|+.|+++++.+....+..+..+. +|++|++.+|.+.. .....
T Consensus 52 ~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~ 131 (319)
T cd00116 52 SLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKG 131 (319)
T ss_pred CceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHH
Confidence 46666666655431 1223345566677777776666533333333333 37777777766542 11222
Q ss_pred ccCC-CCccEEEcccccCCcccCc---ccccCCCCcceeeecccccccC----CCCCcCCCCcceEEEeecceeeccc--
Q 037027 91 IFNK-SSLQDLDLSYNALSGEIPA---NICSNLPFLEYISLSQNMFHGG----IPSALSKCTYLQILGLSFNDFSGAI-- 160 (205)
Q Consensus 91 l~~l-~~L~~L~l~~~~~~~~~~~---~~~~~~~~L~~l~l~~~~~~~~----~~~~~~~~~~L~~l~l~~~~~~~~~-- 160 (205)
+..+ ++|+.+++.+|.+++.... ..+..++.|+++++++|.+++. ++..+...++|+.|++++|.+.+..
T Consensus 132 l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~ 211 (319)
T cd00116 132 LKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGAS 211 (319)
T ss_pred HHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHH
Confidence 3344 6677777777766521111 1123445677777777766531 2223344457777777777654322
Q ss_pred --CccccccCCceEEEeecccccccCchhcc-----CCCCCcEEeccCCcC
Q 037027 161 --PKEIGNVTKLKELYLVRNRLQGEIPRELS-----NLAELELMSLFDNEL 204 (205)
Q Consensus 161 --~~~~~~~~~L~~l~l~~~~l~~~~~~~l~-----~~~~L~~l~l~~n~l 204 (205)
...+..+++|++|++++|.+++.....+. ..+.|++|++++|.+
T Consensus 212 ~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i 262 (319)
T cd00116 212 ALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDI 262 (319)
T ss_pred HHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCC
Confidence 23344566777777777777643222222 235677777777765
No 16
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.38 E-value=1.6e-14 Score=117.35 Aligned_cols=129 Identities=28% Similarity=0.341 Sum_probs=103.6
Q ss_pred CCccEEEecCcccccCCCccccCCCCccEEEcccccCCcccCcccccCCCCcceeeecccccccCCCCCcCCCCcceEEE
Q 037027 71 HTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILG 150 (205)
Q Consensus 71 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~ 150 (205)
+.|+.|.+.+|.+++.....+-++.+|+.|++++|.+. .++...+.++..|+.|++++|+++ .+|..+..+..|++|.
T Consensus 359 ~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~-~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ 436 (1081)
T KOG0618|consen 359 AALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN-SFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLR 436 (1081)
T ss_pred HHHHHHHHhcCcccccchhhhccccceeeeeecccccc-cCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHh
Confidence 34777888888887766666777889999999999987 777777788899999999999988 5678888888999999
Q ss_pred eecceeecccCccccccCCceEEEeecccccccCchhccCCCCCcEEeccCCc
Q 037027 151 LSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFDNE 203 (205)
Q Consensus 151 l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~L~~l~l~~n~ 203 (205)
..+|++. ..| .+..++.|+.+|++.|.++......-...++|++||+.||.
T Consensus 437 ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 437 AHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNT 487 (1081)
T ss_pred hcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCc
Confidence 8888886 455 77788999999999999885433333344889999999985
No 17
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.36 E-value=2.3e-14 Score=116.45 Aligned_cols=179 Identities=26% Similarity=0.400 Sum_probs=110.0
Q ss_pred CCceEEEEEecCCcccccCCCCCCCCCCCcEEEeecCcceeecCccccCCCCccEEEecCcccccCCCccccCCCCccEE
Q 037027 21 HSHRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDL 100 (205)
Q Consensus 21 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L 100 (205)
.+.+++.++++++.++ ..|+.+..+.+|+.+...+|.+. ..+..+....+|+.|....|.+. ..|..+..+.+|++|
T Consensus 239 ~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tL 315 (1081)
T KOG0618|consen 239 VPLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTL 315 (1081)
T ss_pred ccccceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeee
Confidence 3445666666666655 34466666666666666666664 44444445555555555555555 455555566777777
Q ss_pred EcccccCCcccCcccccC-------------------------CCCcceeeecccccccCCCCCcCCCCcceEEEeecce
Q 037027 101 DLSYNALSGEIPANICSN-------------------------LPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFND 155 (205)
Q Consensus 101 ~l~~~~~~~~~~~~~~~~-------------------------~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~ 155 (205)
++..|.+. .++..++.. .+.|+.|.+.+|.+++...+.+...+.|+.|++++|.
T Consensus 316 dL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNr 394 (1081)
T KOG0618|consen 316 DLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNR 394 (1081)
T ss_pred eehhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccc
Confidence 77777665 444322221 2335566666666666555556666677777777777
Q ss_pred eecccCccccccCCceEEEeecccccccCchhccCCCCCcEEeccCCcC
Q 037027 156 FSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFDNEL 204 (205)
Q Consensus 156 ~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~L~~l~l~~n~l 204 (205)
+.......+..+..|++|+++||+++ .+|..++.++.|++|...+|.+
T Consensus 395 L~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l 442 (1081)
T KOG0618|consen 395 LNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQL 442 (1081)
T ss_pred cccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCce
Confidence 66444455566677777777777777 6667777777777777766654
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.35 E-value=3.7e-12 Score=105.16 Aligned_cols=162 Identities=25% Similarity=0.426 Sum_probs=85.0
Q ss_pred eEEEEEecCCcccccCCCCCCCCCCCcEEEeecCcceeecCccccCCCCccEEEecCcccccCCCccccCCCCccEEEcc
Q 037027 24 RVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLS 103 (205)
Q Consensus 24 ~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 103 (205)
.++.|++++|.++ .+|..+ ..+|+.|++++|.+. .++..+ ..+|+.|++++|.+. .+|..+. ..|+.|+++
T Consensus 200 ~L~~L~Ls~N~Lt-sLP~~l--~~nL~~L~Ls~N~Lt-sLP~~l--~~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls 270 (754)
T PRK15370 200 QITTLILDNNELK-SLPENL--QGNIKTLYANSNQLT-SIPATL--PDTIQEMELSINRIT-ELPERLP--SALQSLDLF 270 (754)
T ss_pred CCcEEEecCCCCC-cCChhh--ccCCCEEECCCCccc-cCChhh--hccccEEECcCCccC-cCChhHh--CCCCEEECc
Confidence 4566666666655 333332 235666666666555 223222 124555566555554 3333322 245566666
Q ss_pred cccCCcccCcccccCCCCcceeeecccccccCCCCCcC-------------------CCCcceEEEeecceeecccCccc
Q 037027 104 YNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALS-------------------KCTYLQILGLSFNDFSGAIPKEI 164 (205)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~-------------------~~~~L~~l~l~~~~~~~~~~~~~ 164 (205)
+|++. .++..+ .++|+.|++++|+++. +|..+. ..++|+.|++.+|.+.. +|..+
T Consensus 271 ~N~L~-~LP~~l---~~sL~~L~Ls~N~Lt~-LP~~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~Lt~-LP~~l 344 (754)
T PRK15370 271 HNKIS-CLPENL---PEELRYLSVYDNSIRT-LPAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGENALTS-LPASL 344 (754)
T ss_pred CCccC-cccccc---CCCCcEEECCCCcccc-CcccchhhHHHHHhcCCccccCCccccccceeccccCCcccc-CChhh
Confidence 65554 444333 1345555555555542 121110 11456666666666553 34333
Q ss_pred cccCCceEEEeecccccccCchhccCCCCCcEEeccCCcCC
Q 037027 165 GNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFDNELQ 205 (205)
Q Consensus 165 ~~~~~L~~l~l~~~~l~~~~~~~l~~~~~L~~l~l~~n~l~ 205 (205)
.++|+.|++++|+++ .+|..+. +.|+.|++++|.|+
T Consensus 345 --~~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt 380 (754)
T PRK15370 345 --PPELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALT 380 (754)
T ss_pred --cCcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCC
Confidence 357778888888777 4554442 57888888888763
No 19
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.35 E-value=4.2e-12 Score=104.84 Aligned_cols=161 Identities=27% Similarity=0.463 Sum_probs=95.8
Q ss_pred eEEEEEecCCcccccCCCCCCCCCCCcEEEeecCcceeecCccccCCCCccEEEecCcccccCCCccccCCCCccEEEcc
Q 037027 24 RVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLS 103 (205)
Q Consensus 24 ~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 103 (205)
+++.|++++|.+. .+|..+ ..+|+.|++++|.+. .++..+. .+|+.|++++|.+. .+|..+. .+|++|+++
T Consensus 221 nL~~L~Ls~N~Lt-sLP~~l--~~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls 291 (754)
T PRK15370 221 NIKTLYANSNQLT-SIPATL--PDTIQEMELSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVY 291 (754)
T ss_pred CCCEEECCCCccc-cCChhh--hccccEEECcCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECC
Confidence 5666666666655 333322 124555555555554 2222221 24555555555444 2333221 244444444
Q ss_pred cccCCc--------------------ccCcccccCCCCcceeeecccccccCCCCCcCCCCcceEEEeecceeecccCcc
Q 037027 104 YNALSG--------------------EIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKE 163 (205)
Q Consensus 104 ~~~~~~--------------------~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~ 163 (205)
+|.+.. .++... .++|+.|++++|.++. +|..+ .++|+.|++++|.+. .+|..
T Consensus 292 ~N~Lt~LP~~lp~sL~~L~Ls~N~Lt~LP~~l---~~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~L~-~LP~~ 364 (754)
T PRK15370 292 DNSIRTLPAHLPSGITHLNVQSNSLTALPETL---PPGLKTLEAGENALTS-LPASL--PPELQVLDVSKNQIT-VLPET 364 (754)
T ss_pred CCccccCcccchhhHHHHHhcCCccccCCccc---cccceeccccCCcccc-CChhh--cCcccEEECCCCCCC-cCChh
Confidence 444431 333222 3568888888888774 45544 368999999999987 45554
Q ss_pred ccccCCceEEEeecccccccCchhccCCCCCcEEeccCCcCC
Q 037027 164 IGNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFDNELQ 205 (205)
Q Consensus 164 ~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~L~~l~l~~n~l~ 205 (205)
+ .++|++|++++|.++ .+|..+. ..|+.|++++|.++
T Consensus 365 l--p~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~ 401 (754)
T PRK15370 365 L--PPTITTLDVSRNALT-NLPENLP--AALQIMQASRNNLV 401 (754)
T ss_pred h--cCCcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcc
Confidence 4 468999999999998 5565543 36889999999864
No 20
>PLN03150 hypothetical protein; Provisional
Probab=99.32 E-value=9e-12 Score=101.83 Aligned_cols=129 Identities=31% Similarity=0.516 Sum_probs=108.7
Q ss_pred CCCCCCCCC-----ccceeeecCCC----ceEEEEEecCCcccccCCCCCCCCCCCcEEEeecCcceeecCccccCCCCc
Q 037027 3 NWNTSSPVC-----NWTGVTCDVHS----HRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTL 73 (205)
Q Consensus 3 ~~~~~~~~c-----~~~~~~~~~~~----~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L 73 (205)
.|.. ++| .|.|+.|.... ..++.|+|+++.+.+.+|..++.+++|+.|++++|.+....+..+..+++|
T Consensus 391 ~W~g--~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L 468 (623)
T PLN03150 391 GWNG--DPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSL 468 (623)
T ss_pred CCCC--CCCCCcccccccceeeccCCCCceEEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCC
Confidence 5864 344 69999996432 258899999999999999999999999999999999987888889999999
Q ss_pred cEEEecCcccccCCCccccCCCCccEEEcccccCCcccCcccccCCCCcceeeecccccc
Q 037027 74 KYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFH 133 (205)
Q Consensus 74 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~ 133 (205)
+.|++.+|.+....|..+..+.+|++|++++|.+.+.++..+.....++..+++.+|...
T Consensus 469 ~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~l 528 (623)
T PLN03150 469 EVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGL 528 (623)
T ss_pred CEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCCccc
Confidence 999999999998889999999999999999999988888776433445677888877543
No 21
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.28 E-value=2.6e-13 Score=101.15 Aligned_cols=74 Identities=27% Similarity=0.298 Sum_probs=60.4
Q ss_pred CCcEEEeecCcceeecCccccCCCCccEEEecCcccccCCCccccCCCCccEEEccc-ccCCcccCcccccCCCCc
Q 037027 48 SLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSY-NALSGEIPANICSNLPFL 122 (205)
Q Consensus 48 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~-~~~~~~~~~~~~~~~~~L 122 (205)
....+.+..|.|....+++|..+++|+.|++++|.|+.+.|.+|..+..+..|.+.+ |.|+ .+++..|.++..+
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F~gL~sl 142 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-DLPKGAFGGLSSL 142 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-hhhhhHhhhHHHH
Confidence 578899999999988888999999999999999999999999999998887666665 8887 5555554444333
No 22
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.28 E-value=2.1e-11 Score=100.54 Aligned_cols=116 Identities=28% Similarity=0.334 Sum_probs=73.1
Q ss_pred CccEEEecCcccccCCCccccCCCCccEEEcccccCCcccCcccccCCCCcceeeecccccccCCCCCcCCCCcceEEEe
Q 037027 72 TLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGL 151 (205)
Q Consensus 72 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l 151 (205)
+|++|++++|.+. .+|.. ...|+.|++.+|.+. .++. ....|+.|++++|.++. +|.. ..+|+.|++
T Consensus 343 ~Lq~LdLS~N~Ls-~LP~l---p~~L~~L~Ls~N~L~-~LP~----l~~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdL 409 (788)
T PRK15387 343 GLQELSVSDNQLA-SLPTL---PSELYKLWAYNNRLT-SLPA----LPSGLKELIVSGNRLTS-LPVL---PSELKELMV 409 (788)
T ss_pred ccceEecCCCccC-CCCCC---Ccccceehhhccccc-cCcc----cccccceEEecCCcccC-CCCc---ccCCCEEEc
Confidence 3445555555444 22221 123444455555544 3332 12457777777777763 3432 246778888
Q ss_pred ecceeecccCccccccCCceEEEeecccccccCchhccCCCCCcEEeccCCcCC
Q 037027 152 SFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFDNELQ 205 (205)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~L~~l~l~~n~l~ 205 (205)
++|.+.. +|.. ..+|+.|++++|+++ .+|..+..+++|+.|++++|+++
T Consensus 410 S~N~Lss-IP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls 458 (788)
T PRK15387 410 SGNRLTS-LPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLS 458 (788)
T ss_pred cCCcCCC-CCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCC
Confidence 8887763 4432 356788899999988 67888999999999999999875
No 23
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.21 E-value=1.7e-13 Score=106.37 Aligned_cols=168 Identities=29% Similarity=0.435 Sum_probs=101.3
Q ss_pred EEecCCcccccCCCCCCCCCCCcEEEeecCcceeecCccccCCCCccEEEecCcccccCCCccccCCCCccEEEcccccC
Q 037027 28 FNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNAL 107 (205)
Q Consensus 28 l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 107 (205)
.+++.|.+. .+|+.+..|..|+.+.+++|.+. .++.++..+..|.+++++.|.++ .+|..++. .-|+.|.+++|++
T Consensus 80 aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~-lpLkvli~sNNkl 155 (722)
T KOG0532|consen 80 ADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCD-LPLKVLIVSNNKL 155 (722)
T ss_pred hhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhc-CcceeEEEecCcc
Confidence 344444433 34444444444555555555554 45555566666666666666665 55555432 2355566666666
Q ss_pred CcccCcccccCCCCcceeeecccccccCCCCCcCCCCcceEEEeecceeecccCccccccCCceEEEeecccccccCchh
Q 037027 108 SGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRE 187 (205)
Q Consensus 108 ~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~ 187 (205)
. .++..+ .....|..++.+.|.+. .+|.-++.+.+|+.+.+..|.+. .+|..+. .-.|..||+++|++. .+|-.
T Consensus 156 ~-~lp~~i-g~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~-~LpLi~lDfScNkis-~iPv~ 229 (722)
T KOG0532|consen 156 T-SLPEEI-GLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELC-SLPLIRLDFSCNKIS-YLPVD 229 (722)
T ss_pred c-cCCccc-ccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHh-CCceeeeecccCcee-ecchh
Confidence 5 566555 35556666666666665 34444555566666666666555 3454554 446678888888888 77888
Q ss_pred ccCCCCCcEEeccCCcCC
Q 037027 188 LSNLAELELMSLFDNELQ 205 (205)
Q Consensus 188 l~~~~~L~~l~l~~n~l~ 205 (205)
|.++.+|+.|-+.+|+|+
T Consensus 230 fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 230 FRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred hhhhhhheeeeeccCCCC
Confidence 888888888888888874
No 24
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.20 E-value=2e-11 Score=95.04 Aligned_cols=173 Identities=36% Similarity=0.494 Sum_probs=134.8
Q ss_pred ceEEEEEecCCcccccCCCCCCCCC-CCcEEEeecCcceeecCccccCCCCccEEEecCcccccCCCccccCCCCccEEE
Q 037027 23 HRVTVFNVSGLNLTGTIPSQLGNLS-SLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLD 101 (205)
Q Consensus 23 ~~l~~l~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 101 (205)
..+..+++.++.+. .++.....+. +|+.|++++|.+. ..+..+..++.|+.|++..|.+. ..+........|+.|+
T Consensus 116 ~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ 192 (394)
T COG4886 116 TNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLD 192 (394)
T ss_pred cceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhhee
Confidence 35788899888887 4555555664 8999999999988 44466788999999999999988 4555444678899999
Q ss_pred cccccCCcccCcccccCCCCcceeeecccccccCCCCCcCCCCcceEEEeecceeecccCccccccCCceEEEeeccccc
Q 037027 102 LSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQ 181 (205)
Q Consensus 102 l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~ 181 (205)
+++|.+. .++... .....|.++.+++|.+. ..+..+..+.++..+.+.+|++. ..+..+..++.++++++++|.+.
T Consensus 193 ls~N~i~-~l~~~~-~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~ 268 (394)
T COG4886 193 LSGNKIS-DLPPEI-ELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQIS 268 (394)
T ss_pred ccCCccc-cCchhh-hhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccchhccccccceecccccccc
Confidence 9999997 677653 34556999999999543 45666778888888888888776 33566778888999999999998
Q ss_pred ccCchhccCCCCCcEEeccCCcC
Q 037027 182 GEIPRELSNLAELELMSLFDNEL 204 (205)
Q Consensus 182 ~~~~~~l~~~~~L~~l~l~~n~l 204 (205)
+. +. ++...+++.+++++|.+
T Consensus 269 ~i-~~-~~~~~~l~~L~~s~n~~ 289 (394)
T COG4886 269 SI-SS-LGSLTNLRELDLSGNSL 289 (394)
T ss_pred cc-cc-ccccCccCEEeccCccc
Confidence 44 33 88999999999999865
No 25
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.13 E-value=3.5e-11 Score=82.36 Aligned_cols=124 Identities=30% Similarity=0.261 Sum_probs=37.7
Q ss_pred CCCCcEEEeecCcceeecCcccc-CCCCccEEEecCcccccCCCccccCCCCccEEEcccccCCcccCcccccCCCCcce
Q 037027 46 LSSLQSLNLSFNRLSGSIPSATF-ITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEY 124 (205)
Q Consensus 46 ~~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 124 (205)
..+++.|++.++.+.. +. .+. .+.+|+.|++++|.+... +.+..+..|++|++.+|.++ .+...+...+++|+.
T Consensus 18 ~~~~~~L~L~~n~I~~-Ie-~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~ 92 (175)
T PF14580_consen 18 PVKLRELNLRGNQIST-IE-NLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQE 92 (175)
T ss_dssp --------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS----S-CHHHHHH-TT--E
T ss_pred cccccccccccccccc-cc-chhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCC-ccccchHHhCCcCCE
Confidence 3456677777777663 22 222 455677777777766532 23555667777777777775 444333234667777
Q ss_pred eeecccccccC-CCCCcCCCCcceEEEeecceeecccC---ccccccCCceEEE
Q 037027 125 ISLSQNMFHGG-IPSALSKCTYLQILGLSFNDFSGAIP---KEIGNVTKLKELY 174 (205)
Q Consensus 125 l~l~~~~~~~~-~~~~~~~~~~L~~l~l~~~~~~~~~~---~~~~~~~~L~~l~ 174 (205)
|++++|++.+. ....+..+++|+.|++.+|++..... ..+..+|+|+.||
T Consensus 93 L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD 146 (175)
T PF14580_consen 93 LYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLD 146 (175)
T ss_dssp EE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEET
T ss_pred EECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeC
Confidence 77777766542 12345566667777777666643211 2234456666654
No 26
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.13 E-value=5.2e-11 Score=81.51 Aligned_cols=127 Identities=28% Similarity=0.296 Sum_probs=52.0
Q ss_pred cCCCCccEEEecCcccccCCCcccc-CCCCccEEEcccccCCcccCcccccCCCCcceeeecccccccCCCCCc-CCCCc
Q 037027 68 FITHTLKYVDLRGNQLSGAFPSFIF-NKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSAL-SKCTY 145 (205)
Q Consensus 68 ~~l~~L~~L~l~~~~~~~~~~~~l~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~-~~~~~ 145 (205)
.+..++++|++.++.++.. +.+. .+.+|+.|++++|.+. .+.. + ..++.|++|++++|.++. +.+.+ ..+++
T Consensus 16 ~n~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~-~l~~-l-~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~ 89 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQIT-KLEG-L-PGLPRLKTLDLSNNRISS-ISEGLDKNLPN 89 (175)
T ss_dssp ----------------------S--TT-TT--EEE-TTS--S---TT------TT--EEE--SS---S--CHHHHHH-TT
T ss_pred ccccccccccccccccccc--cchhhhhcCCCEEECCCCCCc-cccC-c-cChhhhhhcccCCCCCCc-cccchHHhCCc
Confidence 4556789999999998743 3444 5789999999999997 5553 3 568999999999999984 33333 45789
Q ss_pred ceEEEeecceeeccc-CccccccCCceEEEeecccccccC---chhccCCCCCcEEecc
Q 037027 146 LQILGLSFNDFSGAI-PKEIGNVTKLKELYLVRNRLQGEI---PRELSNLAELELMSLF 200 (205)
Q Consensus 146 L~~l~l~~~~~~~~~-~~~~~~~~~L~~l~l~~~~l~~~~---~~~l~~~~~L~~l~l~ 200 (205)
|+.|++++|.+.+.. -..+..+++|+.|++.+|++.+.. ..++..+|+|+.||-.
T Consensus 90 L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 90 LQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp --EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred CCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence 999999999886422 245667899999999999998532 2566788999988754
No 27
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.12 E-value=6e-12 Score=95.02 Aligned_cols=180 Identities=21% Similarity=0.185 Sum_probs=93.7
Q ss_pred eEEEEEecCCcccccCC--CCCCCCCCCcEEEeecCcceee--cCccccCCCCccEEEecCcccccCCCccc-cCCCCcc
Q 037027 24 RVTVFNVSGLNLTGTIP--SQLGNLSSLQSLNLSFNRLSGS--IPSATFITHTLKYVDLRGNQLSGAFPSFI-FNKSSLQ 98 (205)
Q Consensus 24 ~l~~l~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~~~~~~~~l-~~l~~L~ 98 (205)
+++.+.+.++.+. ..+ +....+++++.|++++|=+... ...-...+++|+.|+++.|.+.....+.. ..+.+|+
T Consensus 122 kL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK 200 (505)
T KOG3207|consen 122 KLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLK 200 (505)
T ss_pred hhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhh
Confidence 4555555554433 112 2344566677777766644311 22223456667777776666542111111 1245666
Q ss_pred EEEcccccCCcccCcccccCCCCcceeeecccccccCCCCCcCCCCcceEEEeecceeeccc-CccccccCCceEEEeec
Q 037027 99 DLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAI-PKEIGNVTKLKELYLVR 177 (205)
Q Consensus 99 ~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~-~~~~~~~~~L~~l~l~~ 177 (205)
.|.++.|+++..-.+.+...+|++..|++..|.....-......++.|+.|+|++|++.+.. ......++.|+.++++.
T Consensus 201 ~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~ 280 (505)
T KOG3207|consen 201 QLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSS 280 (505)
T ss_pred eEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccc
Confidence 67777776653333344345666677777666321121222344556677777776654221 13445566666677666
Q ss_pred cccccc-Cchh-----ccCCCCCcEEeccCCcC
Q 037027 178 NRLQGE-IPRE-----LSNLAELELMSLFDNEL 204 (205)
Q Consensus 178 ~~l~~~-~~~~-----l~~~~~L~~l~l~~n~l 204 (205)
+.+.+. .|++ ...+++|++|++..|++
T Consensus 281 tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I 313 (505)
T KOG3207|consen 281 TGIASIAEPDVESLDKTHTFPKLEYLNISENNI 313 (505)
T ss_pred cCcchhcCCCccchhhhcccccceeeecccCcc
Confidence 666542 1222 33456667777666665
No 28
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.12 E-value=6.3e-10 Score=92.04 Aligned_cols=135 Identities=29% Similarity=0.395 Sum_probs=69.9
Q ss_pred EEEecCCcccccCCCCCCCCCCCcEEEeecCcceeecCccccCCCCccEEEecCcccccCCCcccc--------------
Q 037027 27 VFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIF-------------- 92 (205)
Q Consensus 27 ~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~-------------- 92 (205)
.|+++++.++ .+|..+. .+|+.|++.+|.++. ++. .+++|++|++.+|.++ .+|....
T Consensus 205 ~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~Lt-sLP~lp~sL~~L~Ls~N~L~~ 276 (788)
T PRK15387 205 VLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLT-SLPVLPPGLLELSIFSNPLTH 276 (788)
T ss_pred EEEcCCCCCC-cCCcchh--cCCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccC-cccCcccccceeeccCCchhh
Confidence 4566666665 4454443 256666666666652 221 2355666666666655 2232110
Q ss_pred ---CCCCccEEEcccccCCcccCcccccCCCCcceeeecccccccCCCCCcCCCCcceEEEeecceeecccCccccccCC
Q 037027 93 ---NKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTK 169 (205)
Q Consensus 93 ---~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~ 169 (205)
-...|+.|++.+|.+. .++. ..++|+.|++++|.++. +|.. ..+|..|++.+|.+.. +|. ...+
T Consensus 277 Lp~lp~~L~~L~Ls~N~Lt-~LP~----~p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~~-LP~---lp~~ 343 (788)
T PRK15387 277 LPALPSGLCKLWIFGNQLT-SLPV----LPPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLTS-LPT---LPSG 343 (788)
T ss_pred hhhchhhcCEEECcCCccc-cccc----cccccceeECCCCcccc-CCCC---cccccccccccCcccc-ccc---cccc
Confidence 0123444455555444 3332 13456666776666653 2321 1245556666666542 332 1247
Q ss_pred ceEEEeecccccc
Q 037027 170 LKELYLVRNRLQG 182 (205)
Q Consensus 170 L~~l~l~~~~l~~ 182 (205)
|++|++++|++++
T Consensus 344 Lq~LdLS~N~Ls~ 356 (788)
T PRK15387 344 LQELSVSDNQLAS 356 (788)
T ss_pred cceEecCCCccCC
Confidence 8888888888873
No 29
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.11 E-value=1e-10 Score=66.35 Aligned_cols=61 Identities=33% Similarity=0.453 Sum_probs=47.8
Q ss_pred CcceEEEeecceeecccCccccccCCceEEEeecccccccCchhccCCCCCcEEeccCCcC
Q 037027 144 TYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFDNEL 204 (205)
Q Consensus 144 ~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~L~~l~l~~n~l 204 (205)
++|+.|++++|.+....+..+..+++|+++++++|.++...++.|..+++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 3577788888877766667777888888888888888866677888888888888888875
No 30
>PLN03150 hypothetical protein; Provisional
Probab=99.07 E-value=2.9e-10 Score=93.09 Aligned_cols=106 Identities=38% Similarity=0.618 Sum_probs=80.0
Q ss_pred ccEEEcccccCCcccCcccccCCCCcceeeecccccccCCCCCcCCCCcceEEEeecceeecccCccccccCCceEEEee
Q 037027 97 LQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLV 176 (205)
Q Consensus 97 L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~ 176 (205)
++.|++.++.+.+.++..+ ..+++|+.|++++|.+.+.+|..+..+++|+.|++++|.+.+..|..+..+++|++|+++
T Consensus 420 v~~L~L~~n~L~g~ip~~i-~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDI-SKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEECCCCCccccCCHHH-hCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 5677777777776666665 677888888888888877777777788888888888888877777777788888888888
Q ss_pred cccccccCchhccCC-CCCcEEeccCCc
Q 037027 177 RNRLQGEIPRELSNL-AELELMSLFDNE 203 (205)
Q Consensus 177 ~~~l~~~~~~~l~~~-~~L~~l~l~~n~ 203 (205)
+|.+.+.+|..+... .++..+++.+|+
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCc
Confidence 888877777776643 456667777664
No 31
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.95 E-value=1.9e-09 Score=61.09 Aligned_cols=59 Identities=32% Similarity=0.466 Sum_probs=42.0
Q ss_pred eEEEEEecCCcccccCCCCCCCCCCCcEEEeecCcceeecCccccCCCCccEEEecCcc
Q 037027 24 RVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQ 82 (205)
Q Consensus 24 ~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 82 (205)
+++.|++++|.+....+..|+++++|+.|++++|.+....+.+|..+++|++|++++|.
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 56677777777775556677777777777777777776666677777777777777664
No 32
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.92 E-value=8.2e-11 Score=89.03 Aligned_cols=187 Identities=25% Similarity=0.187 Sum_probs=128.3
Q ss_pred ecCCCceEEEEEecCCccccc--CCCCCCCCCCCcEEEeecCcceeecCc-cccCCCCccEEEecCcccccC-CCccccC
Q 037027 18 CDVHSHRVTVFNVSGLNLTGT--IPSQLGNLSSLQSLNLSFNRLSGSIPS-ATFITHTLKYVDLRGNQLSGA-FPSFIFN 93 (205)
Q Consensus 18 ~~~~~~~l~~l~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~-~~~~l~~ 93 (205)
..+.+++++.|+++++-+... +..-..++++|+.|+++.|++...... .-..+..|+.|.++.|.++.. ....+..
T Consensus 141 ~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~ 220 (505)
T KOG3207|consen 141 YSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLT 220 (505)
T ss_pred hhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHh
Confidence 345677999999999865422 223335689999999999988622221 123567899999999988732 2223446
Q ss_pred CCCccEEEcccccCCcccCcccccCCCCcceeeecccccccCC-CCCcCCCCcceEEEeecceeecc-cCcc-----ccc
Q 037027 94 KSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGI-PSALSKCTYLQILGLSFNDFSGA-IPKE-----IGN 166 (205)
Q Consensus 94 l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~-~~~~~~~~~L~~l~l~~~~~~~~-~~~~-----~~~ 166 (205)
++.|+.|++..|... .........+..|+.|++++|.+.++. ......++.|+.|.++.+.+... .|+. .-.
T Consensus 221 fPsl~~L~L~~N~~~-~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~ 299 (505)
T KOG3207|consen 221 FPSLEVLYLEANEII-LIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHT 299 (505)
T ss_pred CCcHHHhhhhccccc-ceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcc
Confidence 789999999998422 111111145678999999999887542 24567889999999999987532 2222 345
Q ss_pred cCCceEEEeecccccccC-chhccCCCCCcEEeccCCcCC
Q 037027 167 VTKLKELYLVRNRLQGEI-PRELSNLAELELMSLFDNELQ 205 (205)
Q Consensus 167 ~~~L~~l~l~~~~l~~~~-~~~l~~~~~L~~l~l~~n~l~ 205 (205)
+++|++|++..|++.+.- ...+..+++|+.+.+..|.++
T Consensus 300 f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 300 FPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred cccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence 789999999999997431 245566777888877777653
No 33
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.92 E-value=4.7e-11 Score=93.16 Aligned_cols=146 Identities=29% Similarity=0.392 Sum_probs=102.7
Q ss_pred EEecCCcccccCCCCCCCCCCCcEEEeecCcceeecCccccCCCCccEEEecCcccccCCCccccCCCCccEEEcccccC
Q 037027 28 FNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNAL 107 (205)
Q Consensus 28 l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 107 (205)
+.+.+|.+- .+|+.+.++..|+.++|+.|.+. ..+..++.+ -|+.|-+.+|+++ ..|+.+....+|..|+.+.|.+
T Consensus 103 liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~l-pLkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei 178 (722)
T KOG0532|consen 103 LILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDL-PLKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEI 178 (722)
T ss_pred HHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcC-cceeEEEecCccc-cCCcccccchhHHHhhhhhhhh
Confidence 445555443 56777777888888888887776 455544333 3677777777777 6666666667777888888877
Q ss_pred CcccCcccccCCCCcceeeecccccccCCCCCcCCCCcceEEEeecceeecccCccccccCCceEEEeecccccc
Q 037027 108 SGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQG 182 (205)
Q Consensus 108 ~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~ 182 (205)
. .++..+ .++..|+.+++.+|++. ..|+.+..+ .|..||++.|.+. .+|..+..++.|++|-|.+|.+++
T Consensus 179 ~-slpsql-~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLqS 248 (722)
T KOG0532|consen 179 Q-SLPSQL-GYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQS 248 (722)
T ss_pred h-hchHHh-hhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCcee-ecchhhhhhhhheeeeeccCCCCC
Confidence 6 666666 66777788888888776 345555543 4788888888776 677777788888888888888873
No 34
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.90 E-value=1.4e-10 Score=85.51 Aligned_cols=182 Identities=20% Similarity=0.201 Sum_probs=121.3
Q ss_pred ceEEEEEecCCcccc----cCCCCCCCCCCCcEEEeecCcce----------eecCccccCCCCccEEEecCcccccCCC
Q 037027 23 HRVTVFNVSGLNLTG----TIPSQLGNLSSLQSLNLSFNRLS----------GSIPSATFITHTLKYVDLRGNQLSGAFP 88 (205)
Q Consensus 23 ~~l~~l~l~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~----------~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 88 (205)
..++.++|+|+.+.. .+...++.-+.|+..+++...-. .....++.++++|++++++.|-+....+
T Consensus 30 ~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~ 109 (382)
T KOG1909|consen 30 DSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGI 109 (382)
T ss_pred CceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccch
Confidence 368889999998752 24445566677888888764221 1223344567789999999987664333
Q ss_pred cc----ccCCCCccEEEcccccCCcccCccc-------------ccCCCCcceeeecccccccC----CCCCcCCCCcce
Q 037027 89 SF----IFNKSSLQDLDLSYNALSGEIPANI-------------CSNLPFLEYISLSQNMFHGG----IPSALSKCTYLQ 147 (205)
Q Consensus 89 ~~----l~~l~~L~~L~l~~~~~~~~~~~~~-------------~~~~~~L~~l~l~~~~~~~~----~~~~~~~~~~L~ 147 (205)
.. ++++..|++|++.+|++. ...... ...-+.|+.+..++|++-+. +...+...+.|+
T Consensus 110 ~~l~~ll~s~~~L~eL~L~N~Glg-~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~le 188 (382)
T KOG1909|consen 110 RGLEELLSSCTDLEELYLNNCGLG-PEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLE 188 (382)
T ss_pred HHHHHHHHhccCHHHHhhhcCCCC-hhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccc
Confidence 33 345778999999998774 222111 13346788888888877542 234466677888
Q ss_pred EEEeecceeeccc----CccccccCCceEEEeecccccc----cCchhccCCCCCcEEeccCCcCC
Q 037027 148 ILGLSFNDFSGAI----PKEIGNVTKLKELYLVRNRLQG----EIPRELSNLAELELMSLFDNELQ 205 (205)
Q Consensus 148 ~l~l~~~~~~~~~----~~~~~~~~~L~~l~l~~~~l~~----~~~~~l~~~~~L~~l~l~~n~l~ 205 (205)
.++++.|.+.... ...+.++++|+.|++.+|-++. .+.+.+..+++|+.|++.+|.++
T Consensus 189 evr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~ 254 (382)
T KOG1909|consen 189 EVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLE 254 (382)
T ss_pred eEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccc
Confidence 8888888774322 2455678888888888887764 24466667888888888887653
No 35
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.88 E-value=1.3e-10 Score=84.49 Aligned_cols=129 Identities=30% Similarity=0.285 Sum_probs=102.6
Q ss_pred CCCcEEEeecCcceeecCccccCCCCccEEEecCcccccCCCccccCCCCccEEEcccccCCcccCcccccCCCCcceee
Q 037027 47 SSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYIS 126 (205)
Q Consensus 47 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~ 126 (205)
+.|+.+++++|.|. -+.....-.+.++.|+++.|.+... ..+..+++|++|++++|.++ ++...- .++.+++++.
T Consensus 284 q~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~Gwh-~KLGNIKtL~ 358 (490)
T KOG1259|consen 284 QELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVGWH-LKLGNIKTLK 358 (490)
T ss_pred hhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhH-hhhhhH-hhhcCEeeee
Confidence 46889999999988 4566677889999999999998733 23778899999999999887 665544 6788999999
Q ss_pred ecccccccCCCCCcCCCCcceEEEeecceeec-ccCccccccCCceEEEeecccccc
Q 037027 127 LSQNMFHGGIPSALSKCTYLQILGLSFNDFSG-AIPKEIGNVTKLKELYLVRNRLQG 182 (205)
Q Consensus 127 l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~-~~~~~~~~~~~L~~l~l~~~~l~~ 182 (205)
++.|.+. ....+..+.+|..||+.+|++.. .....++.+|-|+++.+.+|++..
T Consensus 359 La~N~iE--~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 359 LAQNKIE--TLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred hhhhhHh--hhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence 9999884 33567788899999999998752 223566788899999999998874
No 36
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.87 E-value=1.3e-09 Score=84.95 Aligned_cols=156 Identities=33% Similarity=0.528 Sum_probs=119.7
Q ss_pred CCCCCCCcEEEeecCcceeecCccccCCC-CccEEEecCcccccCCCccccCCCCccEEEcccccCCcccCcccccCCCC
Q 037027 43 LGNLSSLQSLNLSFNRLSGSIPSATFITH-TLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPF 121 (205)
Q Consensus 43 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 121 (205)
+..+..++.+++.++.+. .++....... +|+.|+++.+.+. ..+..+..++.|+.|++..|++. .++... ...+.
T Consensus 112 ~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~-~~~~~ 187 (394)
T COG4886 112 LLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLL-SNLSN 187 (394)
T ss_pred hhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhh-hhhhh
Confidence 344567888999998888 4555555563 8999999999887 55556677899999999999987 666543 36788
Q ss_pred cceeeecccccccCCCCCcCCCCcceEEEeecceeecccCccccccCCceEEEeecccccccCchhccCCCCCcEEeccC
Q 037027 122 LEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFD 201 (205)
Q Consensus 122 L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~L~~l~l~~ 201 (205)
+..+++++|.+. .+|........|+.+.+++|... ..+..+..++.+..+.+.+|++. ..+..+..++++++|++.+
T Consensus 188 L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~ 264 (394)
T COG4886 188 LNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSN 264 (394)
T ss_pred hhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccchhccccccceecccc
Confidence 999999999987 44554445566899999998533 44556677888888888888887 4467888899999999999
Q ss_pred CcCC
Q 037027 202 NELQ 205 (205)
Q Consensus 202 n~l~ 205 (205)
|.++
T Consensus 265 n~i~ 268 (394)
T COG4886 265 NQIS 268 (394)
T ss_pred cccc
Confidence 9874
No 37
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.82 E-value=2.6e-10 Score=84.01 Aligned_cols=182 Identities=20% Similarity=0.214 Sum_probs=126.1
Q ss_pred ceEEEEEecCCcccccCCCC----CCCCCCCcEEEeecCcceee-------------cCccccCCCCccEEEecCccccc
Q 037027 23 HRVTVFNVSGLNLTGTIPSQ----LGNLSSLQSLNLSFNRLSGS-------------IPSATFITHTLKYVDLRGNQLSG 85 (205)
Q Consensus 23 ~~l~~l~l~~~~~~~~~~~~----~~~~~~L~~L~l~~~~~~~~-------------~~~~~~~l~~L~~L~l~~~~~~~ 85 (205)
++++.++|+.|-+...-+.. +..+..|++|.+.+|.+... .......-+.|+++...+|.+.+
T Consensus 92 ~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen 171 (382)
T KOG1909|consen 92 PKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLEN 171 (382)
T ss_pred CceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccccc
Confidence 48888999998776443332 34567789999998877521 11223445678999988887763
Q ss_pred C----CCccccCCCCccEEEcccccCCcccC---cccccCCCCcceeeeccccccc----CCCCCcCCCCcceEEEeecc
Q 037027 86 A----FPSFIFNKSSLQDLDLSYNALSGEIP---ANICSNLPFLEYISLSQNMFHG----GIPSALSKCTYLQILGLSFN 154 (205)
Q Consensus 86 ~----~~~~l~~l~~L~~L~l~~~~~~~~~~---~~~~~~~~~L~~l~l~~~~~~~----~~~~~~~~~~~L~~l~l~~~ 154 (205)
. ....++..+.|+.+.+..|.|..... ..-+..+++|+.|++.+|.++. .+.+.++.++.|+.+.+++|
T Consensus 172 ~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dc 251 (382)
T KOG1909|consen 172 GGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDC 251 (382)
T ss_pred ccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccccc
Confidence 2 22335566788999999887752221 1223567889999999998764 35567788889999999999
Q ss_pred eeecccCccc-----cccCCceEEEeeccccccc----CchhccCCCCCcEEeccCCcC
Q 037027 155 DFSGAIPKEI-----GNVTKLKELYLVRNRLQGE----IPRELSNLAELELMSLFDNEL 204 (205)
Q Consensus 155 ~~~~~~~~~~-----~~~~~L~~l~l~~~~l~~~----~~~~l~~~~~L~~l~l~~n~l 204 (205)
.+.......+ ...++|+.+.+.+|.++.. +..+++..+.|..|++++|.+
T Consensus 252 ll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 252 LLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred ccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 8764333222 3468899999999988743 334555678899999999876
No 38
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.73 E-value=1.1e-09 Score=79.81 Aligned_cols=128 Identities=23% Similarity=0.306 Sum_probs=101.3
Q ss_pred eEEEEEecCCcccccCCCCCCCCCCCcEEEeecCcceeecCccccCCCCccEEEecCcccccCCCccccCCCCccEEEcc
Q 037027 24 RVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLS 103 (205)
Q Consensus 24 ~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 103 (205)
.++++|+++|.|+ .+.+.+.-.+.++.|++++|.+.. ...+..+++|+.|++++|.++... ..=.++.++++|.++
T Consensus 285 ~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~--v~nLa~L~~L~~LDLS~N~Ls~~~-Gwh~KLGNIKtL~La 360 (490)
T KOG1259|consen 285 ELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRT--VQNLAELPQLQLLDLSGNLLAECV-GWHLKLGNIKTLKLA 360 (490)
T ss_pred hhhhccccccchh-hhhhhhhhccceeEEeccccceee--ehhhhhcccceEeecccchhHhhh-hhHhhhcCEeeeehh
Confidence 3667999999887 677777788999999999999973 334778999999999999886321 112357789999999
Q ss_pred cccCCcccCcccccCCCCcceeeeccccccc-CCCCCcCCCCcceEEEeecceeec
Q 037027 104 YNALSGEIPANICSNLPFLEYISLSQNMFHG-GIPSALSKCTYLQILGLSFNDFSG 158 (205)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~-~~~~~~~~~~~L~~l~l~~~~~~~ 158 (205)
+|.+. .++. + .++-+|..+++.+|+|.. .....+++++.|+++.+.+|++.+
T Consensus 361 ~N~iE-~LSG-L-~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 361 QNKIE-TLSG-L-RKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred hhhHh-hhhh-h-HhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence 99886 4433 2 567789999999999874 233678899999999999999864
No 39
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.66 E-value=4.3e-10 Score=81.62 Aligned_cols=157 Identities=22% Similarity=0.152 Sum_probs=87.0
Q ss_pred CCCCcEEEeecCcceeecCccccCCCCccEEEecCcccccCC--CccccCCCCccEEEcccccCCcccCc-ccccCCCCc
Q 037027 46 LSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAF--PSFIFNKSSLQDLDLSYNALSGEIPA-NICSNLPFL 122 (205)
Q Consensus 46 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~--~~~l~~l~~L~~L~l~~~~~~~~~~~-~~~~~~~~L 122 (205)
+++|+.+++.++.+.+-+...+.+-..|+.+++++|+--... .-.+..+..|..|++++|.+..+... .+...-++|
T Consensus 209 C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l 288 (419)
T KOG2120|consen 209 CSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETL 288 (419)
T ss_pred HHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhh
Confidence 444555555555544444444445555666666665421111 11133456666777776654322111 111112456
Q ss_pred ceeeecccccc--c-CCCCCcCCCCcceEEEeeccee-ecccCccccccCCceEEEeeccccc-ccCchhccCCCCCcEE
Q 037027 123 EYISLSQNMFH--G-GIPSALSKCTYLQILGLSFNDF-SGAIPKEIGNVTKLKELYLVRNRLQ-GEIPRELSNLAELELM 197 (205)
Q Consensus 123 ~~l~l~~~~~~--~-~~~~~~~~~~~L~~l~l~~~~~-~~~~~~~~~~~~~L~~l~l~~~~l~-~~~~~~l~~~~~L~~l 197 (205)
..|+++++.-. . .+.--.+.+++|..||+++|.. .+.....+..++.|+++.++.|-.- -...-.+...|.|.+|
T Consensus 289 ~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yL 368 (419)
T KOG2120|consen 289 TQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYL 368 (419)
T ss_pred hhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEE
Confidence 77777766321 1 1111135678899999999854 3334456677899999999988532 1222345677889999
Q ss_pred eccCC
Q 037027 198 SLFDN 202 (205)
Q Consensus 198 ~l~~n 202 (205)
++.++
T Consensus 369 dv~g~ 373 (419)
T KOG2120|consen 369 DVFGC 373 (419)
T ss_pred Eeccc
Confidence 98876
No 40
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.60 E-value=8.3e-09 Score=74.18 Aligned_cols=184 Identities=21% Similarity=0.204 Sum_probs=129.7
Q ss_pred CCceEEEEEecCCccccc----CCCCCCCCCCCcEEEeecCcce----------eecCccccCCCCccEEEecCcccccC
Q 037027 21 HSHRVTVFNVSGLNLTGT----IPSQLGNLSSLQSLNLSFNRLS----------GSIPSATFITHTLKYVDLRGNQLSGA 86 (205)
Q Consensus 21 ~~~~l~~l~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~----------~~~~~~~~~l~~L~~L~l~~~~~~~~ 86 (205)
.+..++.++++||.|... +...+++-++|+..+++..... .....++.++++|+.++++.|-+...
T Consensus 28 ~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~ 107 (388)
T COG5238 28 MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE 107 (388)
T ss_pred hhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence 355788999999988633 4556677788998888875322 22345567899999999999987765
Q ss_pred CCcc----ccCCCCccEEEcccccCCcccCcccc-------------cCCCCcceeeecccccccCCC----CCcCCCCc
Q 037027 87 FPSF----IFNKSSLQDLDLSYNALSGEIPANIC-------------SNLPFLEYISLSQNMFHGGIP----SALSKCTY 145 (205)
Q Consensus 87 ~~~~----l~~l~~L~~L~l~~~~~~~~~~~~~~-------------~~~~~L~~l~l~~~~~~~~~~----~~~~~~~~ 145 (205)
.++. +++...|.||.+.+|++- .+..... ..-|.|+++.+++|++..... ..+..-..
T Consensus 108 ~~e~L~d~is~~t~l~HL~l~NnGlG-p~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~ 186 (388)
T COG5238 108 FPEELGDLISSSTDLVHLKLNNNGLG-PIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHEN 186 (388)
T ss_pred cchHHHHHHhcCCCceeEEeecCCCC-ccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcC
Confidence 5554 345678999999999874 4333211 234779999999998863211 12333357
Q ss_pred ceEEEeecceeecccC-----ccccccCCceEEEeecccccc----cCchhccCCCCCcEEeccCCcCC
Q 037027 146 LQILGLSFNDFSGAIP-----KEIGNVTKLKELYLVRNRLQG----EIPRELSNLAELELMSLFDNELQ 205 (205)
Q Consensus 146 L~~l~l~~~~~~~~~~-----~~~~~~~~L~~l~l~~~~l~~----~~~~~l~~~~~L~~l~l~~n~l~ 205 (205)
|..+.+..|.+..... ..+.++.+|+.|++++|.++- ....++..++.|+.|.+.+|-++
T Consensus 187 lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls 255 (388)
T COG5238 187 LKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLS 255 (388)
T ss_pred ceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhc
Confidence 8899999998764322 223567899999999998874 34566678888999999888653
No 41
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.49 E-value=4.2e-08 Score=82.88 Aligned_cols=105 Identities=24% Similarity=0.237 Sum_probs=54.0
Q ss_pred eEEEEEecCCc--ccccCCCCCCCCCCCcEEEeecCcceeecCccccCCCCccEEEecCcccccCCCccccCCCCccEEE
Q 037027 24 RVTVFNVSGLN--LTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLD 101 (205)
Q Consensus 24 ~l~~l~l~~~~--~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 101 (205)
++++|-+.++. +.....++|..++.|+.||+++|.-....|..+..+-+||+|++.++.+. .+|..+..+..|.+|+
T Consensus 546 ~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Ln 624 (889)
T KOG4658|consen 546 KLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLN 624 (889)
T ss_pred ccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheec
Confidence 45555555543 33333444555566666666655433345555555666666666666555 5555555555666666
Q ss_pred cccccCCcccCcccccCCCCcceeeeccc
Q 037027 102 LSYNALSGEIPANICSNLPFLEYISLSQN 130 (205)
Q Consensus 102 l~~~~~~~~~~~~~~~~~~~L~~l~l~~~ 130 (205)
+..+...... ..+...+.+|+++.+...
T Consensus 625 l~~~~~l~~~-~~i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 625 LEVTGRLESI-PGILLELQSLRVLRLPRS 652 (889)
T ss_pred cccccccccc-cchhhhcccccEEEeecc
Confidence 5555433122 222233555555555444
No 42
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.46 E-value=2.9e-08 Score=77.88 Aligned_cols=151 Identities=29% Similarity=0.345 Sum_probs=70.4
Q ss_pred CCCCCCcEEEeecCcceeecCccccCCCCccEEEecCcccccCCCccccCCCCccEEEcccccCCcccCcccccCCCCcc
Q 037027 44 GNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLE 123 (205)
Q Consensus 44 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 123 (205)
..+.+++.+++.+|.+.. ....+..+.+|++|++++|.++.. ..+..+..|+.|++.+|.+. .+... ..+..++
T Consensus 92 ~~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~l~~N~i~-~~~~~--~~l~~L~ 165 (414)
T KOG0531|consen 92 SKLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKELNLSGNLIS-DISGL--ESLKSLK 165 (414)
T ss_pred ccccceeeeeccccchhh-cccchhhhhcchheeccccccccc--cchhhccchhhheeccCcch-hccCC--ccchhhh
Confidence 344455555555555542 111134455555555555555422 22233444555555555554 22221 2244455
Q ss_pred eeeecccccccCCC-CCcCCCCcceEEEeeccee----------------------ecccCccccccC--CceEEEeecc
Q 037027 124 YISLSQNMFHGGIP-SALSKCTYLQILGLSFNDF----------------------SGAIPKEIGNVT--KLKELYLVRN 178 (205)
Q Consensus 124 ~l~l~~~~~~~~~~-~~~~~~~~L~~l~l~~~~~----------------------~~~~~~~~~~~~--~L~~l~l~~~ 178 (205)
.+++++|.+..... . ...+.+++.+++.+|.+ ....+ +.... +|+.+++.+|
T Consensus 166 ~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~~~~~~~~l~~~~l~~n~i~~~~~--l~~~~~~~L~~l~l~~n 242 (414)
T KOG0531|consen 166 LLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIEGLDLLKKLVLLSLLDNKISKLEG--LNELVMLHLRELYLSGN 242 (414)
T ss_pred cccCCcchhhhhhhhh-hhhccchHHHhccCCchhcccchHHHHHHHHhhcccccceeccC--cccchhHHHHHHhcccC
Confidence 55555555443211 1 23344444444444433 21111 11111 2677777777
Q ss_pred cccccCchhccCCCCCcEEeccCCcC
Q 037027 179 RLQGEIPRELSNLAELELMSLFDNEL 204 (205)
Q Consensus 179 ~l~~~~~~~l~~~~~L~~l~l~~n~l 204 (205)
++. .+++.+..+..+..+++.+|.+
T Consensus 243 ~i~-~~~~~~~~~~~l~~l~~~~n~~ 267 (414)
T KOG0531|consen 243 RIS-RSPEGLENLKNLPVLDLSSNRI 267 (414)
T ss_pred ccc-cccccccccccccccchhhccc
Confidence 776 3335566666777777776654
No 43
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.34 E-value=5.5e-07 Score=47.05 Aligned_cols=36 Identities=33% Similarity=0.517 Sum_probs=15.8
Q ss_pred cceEEEeecceeecccCccccccCCceEEEeeccccc
Q 037027 145 YLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQ 181 (205)
Q Consensus 145 ~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~ 181 (205)
+|++|++++|++. .++..+..+++|++|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 3445555555444 22333444555555555555444
No 44
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.31 E-value=6.6e-07 Score=75.83 Aligned_cols=128 Identities=27% Similarity=0.342 Sum_probs=68.1
Q ss_pred CCCcEEEeecCcceeecCccccCCCCccEEEecCcc--cccCCCccccCCCCccEEEcccccCCcccCcccccCCCCcce
Q 037027 47 SSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQ--LSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEY 124 (205)
Q Consensus 47 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 124 (205)
...+++.+.++.+. ..+.+. ..+.|++|-+..+. +.......|..++.|+.|++++|.--+++|..+ +.+-+|++
T Consensus 523 ~~~rr~s~~~~~~~-~~~~~~-~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I-~~Li~Lry 599 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIE-HIAGSS-ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSI-GELVHLRY 599 (889)
T ss_pred hheeEEEEeccchh-hccCCC-CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHH-hhhhhhhc
Confidence 34555666555554 222222 23356666665554 222333345556666666666553333555555 55566666
Q ss_pred eeecccccccCCCCCcCCCCcceEEEeecceeecccCccccccCCceEEEeecc
Q 037027 125 ISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRN 178 (205)
Q Consensus 125 l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~ 178 (205)
|++++..+. .+|..+..++.|.+|++..+......+.....+++|++|.+...
T Consensus 600 L~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 600 LDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRS 652 (889)
T ss_pred ccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeecc
Confidence 666666665 45666666666666666655433333444445566666655554
No 45
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.27 E-value=5.6e-09 Score=84.20 Aligned_cols=126 Identities=25% Similarity=0.310 Sum_probs=82.5
Q ss_pred CcEEEeecCcceeecCccccCCCCccEEEecCcccccCCCccccCCCCccEEEcccccCCcccCcccccCCCCcceeeec
Q 037027 49 LQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLS 128 (205)
Q Consensus 49 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~ 128 (205)
|...+++.|.+. ....++..++.++.|++++|+++.. ..++.+++|++|+++.|.+. .++..--.++ .|+.|.+.
T Consensus 166 L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc-~L~~L~lr 240 (1096)
T KOG1859|consen 166 LATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGC-KLQLLNLR 240 (1096)
T ss_pred HhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhh-hheeeeec
Confidence 333444444444 3444555677788888888888743 26778888888888888876 6665432233 38888888
Q ss_pred ccccccCCCCCcCCCCcceEEEeecceeeccc-CccccccCCceEEEeeccccc
Q 037027 129 QNMFHGGIPSALSKCTYLQILGLSFNDFSGAI-PKEIGNVTKLKELYLVRNRLQ 181 (205)
Q Consensus 129 ~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~-~~~~~~~~~L~~l~l~~~~l~ 181 (205)
+|.++.. ..+.++++|+.||++.|-+.+.. -.-++.+..|+.|+|.||++-
T Consensus 241 nN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 241 NNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred ccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 8877532 33567788888888888664321 112345677888888888763
No 46
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.23 E-value=4.9e-07 Score=66.10 Aligned_cols=160 Identities=18% Similarity=0.127 Sum_probs=91.0
Q ss_pred CCCCcEEEeecCcceeec--CccccCCCCccEEEecCcccccCCCccccCCCCccEEEcccccCCcccCcccccCCCCcc
Q 037027 46 LSSLQSLNLSFNRLSGSI--PSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLE 123 (205)
Q Consensus 46 ~~~L~~L~l~~~~~~~~~--~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 123 (205)
.+.++.+++.+|.+.+.. ...+..+|.|++|+++.|++.......-.+..+|+++.+.++.+...........+|.++
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vt 149 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVT 149 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhh
Confidence 456777888888776442 234467788888888888766322211134567777777777665444444445666667
Q ss_pred eeeecccccccC--CCCCc---------------------------CCCCcceEEEeecceeecc-cCccccccCCceEE
Q 037027 124 YISLSQNMFHGG--IPSAL---------------------------SKCTYLQILGLSFNDFSGA-IPKEIGNVTKLKEL 173 (205)
Q Consensus 124 ~l~l~~~~~~~~--~~~~~---------------------------~~~~~L~~l~l~~~~~~~~-~~~~~~~~~~L~~l 173 (205)
.+.++.|+.... ..+.. +.++++..+.+..|++.+. .....-.++++.-|
T Consensus 150 elHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~L 229 (418)
T KOG2982|consen 150 ELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCL 229 (418)
T ss_pred hhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhh
Confidence 777766633210 00111 1123333344444433211 11222334566667
Q ss_pred EeecccccccC-chhccCCCCCcEEeccCCcCC
Q 037027 174 YLVRNRLQGEI-PRELSNLAELELMSLFDNELQ 205 (205)
Q Consensus 174 ~l~~~~l~~~~-~~~l~~~~~L~~l~l~~n~l~ 205 (205)
+++.++|.+.. -++++.+++|+.|.+.++|+.
T Consensus 230 nL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~ 262 (418)
T KOG2982|consen 230 NLGANNIDSWASVDALNGFPQLVDLRVSENPLS 262 (418)
T ss_pred hhcccccccHHHHHHHcCCchhheeeccCCccc
Confidence 77777776532 377888899999999888863
No 47
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.23 E-value=4.6e-08 Score=79.10 Aligned_cols=102 Identities=32% Similarity=0.350 Sum_probs=57.9
Q ss_pred CccEEEcccccCCcccCcccccCCCCcceeeecccccccCCCCCcCCCCcceEEEeecceeecccCccccccCCceEEEe
Q 037027 96 SLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYL 175 (205)
Q Consensus 96 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l 175 (205)
+|.+.+.+.|.+. .+...+ +-++.++.|+++.|+++.. +.++.++.|.+||++.|.++. .|..-..-++|+.|.+
T Consensus 165 ~L~~a~fsyN~L~-~mD~SL-qll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~-vp~l~~~gc~L~~L~l 239 (1096)
T KOG1859|consen 165 KLATASFSYNRLV-LMDESL-QLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRH-VPQLSMVGCKLQLLNL 239 (1096)
T ss_pred hHhhhhcchhhHH-hHHHHH-HHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhcc-ccccchhhhhheeeee
Confidence 3444444444443 333333 4456677777777777532 366677777777777777663 3333222334777777
Q ss_pred ecccccccCchhccCCCCCcEEeccCCcC
Q 037027 176 VRNRLQGEIPRELSNLAELELMSLFDNEL 204 (205)
Q Consensus 176 ~~~~l~~~~~~~l~~~~~L~~l~l~~n~l 204 (205)
++|.++ . ...+.++++|+.||++.|-|
T Consensus 240 rnN~l~-t-L~gie~LksL~~LDlsyNll 266 (1096)
T KOG1859|consen 240 RNNALT-T-LRGIENLKSLYGLDLSYNLL 266 (1096)
T ss_pred cccHHH-h-hhhHHhhhhhhccchhHhhh
Confidence 777665 2 23445666666666666643
No 48
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.18 E-value=8.9e-08 Score=75.20 Aligned_cols=129 Identities=29% Similarity=0.395 Sum_probs=97.6
Q ss_pred CCCCCcEEEeecCcceeecCccccCCCCccEEEecCcccccCCCccccCCCCccEEEcccccCCcccCcccccCCCCcce
Q 037027 45 NLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEY 124 (205)
Q Consensus 45 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 124 (205)
.+..++.+.+..+.+.. ....+..+.++..+++..+.+. .....+..+.+|++|+++.|.|. .+..- ..++.|+.
T Consensus 70 ~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~-~i~~l--~~l~~L~~ 144 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKIT-KLEGL--STLTLLKE 144 (414)
T ss_pred HhHhHHhhccchhhhhh-hhcccccccceeeeeccccchh-hcccchhhhhcchheeccccccc-cccch--hhccchhh
Confidence 45667777777777763 3445678899999999999997 33333677899999999999997 44432 44667999
Q ss_pred eeecccccccCCCCCcCCCCcceEEEeecceeecccC-ccccccCCceEEEeeccccc
Q 037027 125 ISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIP-KEIGNVTKLKELYLVRNRLQ 181 (205)
Q Consensus 125 l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~-~~~~~~~~L~~l~l~~~~l~ 181 (205)
|++.+|.+... +.+..++.|+.+++++|.+..... . ...+.+++.+++.+|.+.
T Consensus 145 L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 145 LNLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIR 199 (414)
T ss_pred heeccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchh
Confidence 99999999743 445568999999999998864433 2 466888888888888775
No 49
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.13 E-value=5.7e-06 Score=57.23 Aligned_cols=103 Identities=21% Similarity=0.223 Sum_probs=54.1
Q ss_pred ccEEEecCcccccCCCccccCCCCccEEEcccccCCcccCcccccCCCCcceeeecccccccC-CCCCcCCCCcceEEEe
Q 037027 73 LKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGG-IPSALSKCTYLQILGL 151 (205)
Q Consensus 73 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~-~~~~~~~~~~L~~l~l 151 (205)
...+++++|.+. -...|..+..|.+|.+.+|.|+ .+...+-..++++..|.+.+|++... ..+.+..++.|+.|.+
T Consensus 44 ~d~iDLtdNdl~--~l~~lp~l~rL~tLll~nNrIt-~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 44 FDAIDLTDNDLR--KLDNLPHLPRLHTLLLNNNRIT-RIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL 120 (233)
T ss_pred cceecccccchh--hcccCCCccccceEEecCCcce-eeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence 445556555543 1223445556666666666665 55554444456666666666665431 1133455566666666
Q ss_pred ecceeecccC---ccccccCCceEEEeecc
Q 037027 152 SFNDFSGAIP---KEIGNVTKLKELYLVRN 178 (205)
Q Consensus 152 ~~~~~~~~~~---~~~~~~~~L~~l~l~~~ 178 (205)
-+|++....- ..++.+++|++|+++.-
T Consensus 121 l~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 121 LGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred cCCchhcccCceeEEEEecCcceEeehhhh
Confidence 6665542211 23344566666665554
No 50
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=98.09 E-value=3e-05 Score=50.63 Aligned_cols=122 Identities=21% Similarity=0.255 Sum_probs=42.6
Q ss_pred cccCCCCccEEEecCcccccCCCccccCCCCccEEEcccccCCcccCcccccCCCCcceeeecccccccCCCCCcCCCCc
Q 037027 66 ATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTY 145 (205)
Q Consensus 66 ~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~ 145 (205)
+|..+.+|+.+.+.. .+.......+..+.+|+.+.+..+ +. .+....+..++.++.+.+.. .+.......+..+++
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~-~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~ 82 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LT-SIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTN 82 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TS-CE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TT
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-cc-ccceeeeecccccccccccc-ccccccccccccccc
Confidence 344444444444432 122222333444444555555443 33 33433444554555555544 222223344555666
Q ss_pred ceEEEeecceeecccCccccccCCceEEEeecccccccCchhccCCCCC
Q 037027 146 LQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAEL 194 (205)
Q Consensus 146 L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~L 194 (205)
++.+.+..+ +.......+..+ .++.+.+.. .++......|.++++|
T Consensus 83 l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 83 LKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp ECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred ccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence 666666543 322334444444 666666554 3332444566666555
No 51
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.05 E-value=1.1e-06 Score=72.62 Aligned_cols=132 Identities=21% Similarity=0.303 Sum_probs=88.8
Q ss_pred CCccEEEecCcccc-cCCCcccc-CCCCccEEEcccccCCcccCcccccCCCCcceeeecccccccCCCCCcCCCCcceE
Q 037027 71 HTLKYVDLRGNQLS-GAFPSFIF-NKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQI 148 (205)
Q Consensus 71 ~~L~~L~l~~~~~~-~~~~~~l~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~ 148 (205)
.+|++|++++...- ...+..++ -+|.|++|.+.+-.+...--...+..+|+|..||+++.+++.. ..+..+++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence 46888898885432 12222232 4789999998887664222234557889999999999988743 66788888998
Q ss_pred EEeecceeec-ccCccccccCCceEEEeeccccccc------CchhccCCCCCcEEeccCCcC
Q 037027 149 LGLSFNDFSG-AIPKEIGNVTKLKELYLVRNRLQGE------IPRELSNLAELELMSLFDNEL 204 (205)
Q Consensus 149 l~l~~~~~~~-~~~~~~~~~~~L~~l~l~~~~l~~~------~~~~l~~~~~L~~l~l~~n~l 204 (205)
|.+.+-.+.. ..-..+..+++|+.||++.....+. .-+....+|+|+.||.+++.+
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi 262 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDI 262 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcch
Confidence 8877755532 2223456789999999998754421 113333578999999988765
No 52
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.98 E-value=7e-08 Score=70.38 Aligned_cols=157 Identities=20% Similarity=0.164 Sum_probs=104.5
Q ss_pred CceEEEEEecCCcccccCCCCCCCCCCCcEEEeecCc-ceee-cCccccCCCCccEEEecCccccc-CCCccccC-CCCc
Q 037027 22 SHRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNR-LSGS-IPSATFITHTLKYVDLRGNQLSG-AFPSFIFN-KSSL 97 (205)
Q Consensus 22 ~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~-~~~~~~~l~~L~~L~l~~~~~~~-~~~~~l~~-l~~L 97 (205)
+.+++.+++.|+.+...+...+++-++|+.++++.+. ++.. ....+..+..|+.|+++.|.... ........ -..|
T Consensus 209 C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l 288 (419)
T KOG2120|consen 209 CSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETL 288 (419)
T ss_pred HHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhh
Confidence 3467788888888877777788888999999998764 4422 22345788999999999997652 22222222 2467
Q ss_pred cEEEcccccCC--cccCcccccCCCCcceeeeccccc-ccCCCCCcCCCCcceEEEeeccee-ecccCccccccCCceEE
Q 037027 98 QDLDLSYNALS--GEIPANICSNLPFLEYISLSQNMF-HGGIPSALSKCTYLQILGLSFNDF-SGAIPKEIGNVTKLKEL 173 (205)
Q Consensus 98 ~~L~l~~~~~~--~~~~~~~~~~~~~L~~l~l~~~~~-~~~~~~~~~~~~~L~~l~l~~~~~-~~~~~~~~~~~~~L~~l 173 (205)
..|+++++.-. .....-+...++++..|++++|.. +......+..++.|+++.++.|.. .....-.+...++|.+|
T Consensus 289 ~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yL 368 (419)
T KOG2120|consen 289 TQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYL 368 (419)
T ss_pred hhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEE
Confidence 77888876321 111112235678999999998854 322334567788899999999853 22222344667889999
Q ss_pred Eeecc
Q 037027 174 YLVRN 178 (205)
Q Consensus 174 ~l~~~ 178 (205)
++-++
T Consensus 369 dv~g~ 373 (419)
T KOG2120|consen 369 DVFGC 373 (419)
T ss_pred Eeccc
Confidence 88776
No 53
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.97 E-value=3.1e-07 Score=59.59 Aligned_cols=85 Identities=26% Similarity=0.376 Sum_probs=43.2
Q ss_pred CCCccEEEcccccCCcccCcccccCCCCcceeeecccccccCCCCCcCCCCcceEEEeecceeecccCccccccCCceEE
Q 037027 94 KSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKEL 173 (205)
Q Consensus 94 l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l 173 (205)
..+|...++++|.+. .++..+-...+.+.++++.+|.+. ..|..+..++.|+.+.+..|++. ..|+.+..+.++..|
T Consensus 52 ~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~L 128 (177)
T KOG4579|consen 52 GYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDML 128 (177)
T ss_pred CceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHh
Confidence 344555555555554 444444344445555555555555 33444555555555555555554 334444445555555
Q ss_pred Eeeccccc
Q 037027 174 YLVRNRLQ 181 (205)
Q Consensus 174 ~l~~~~l~ 181 (205)
+..+|.+.
T Consensus 129 ds~~na~~ 136 (177)
T KOG4579|consen 129 DSPENARA 136 (177)
T ss_pred cCCCCccc
Confidence 55555444
No 54
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.94 E-value=2e-05 Score=54.58 Aligned_cols=102 Identities=22% Similarity=0.196 Sum_probs=42.9
Q ss_pred CcEEEeecCcceeecCccccCCCCccEEEecCcccccCCCccccCCCCccEEEcccccCCcccC-cccccCCCCcceeee
Q 037027 49 LQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIP-ANICSNLPFLEYISL 127 (205)
Q Consensus 49 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~~~~~~L~~l~l 127 (205)
...+++.+|.+. -...|..++.|.+|.+.+|.++.+.|..-..++.|..|.+.+|++. .+. -.-...++.|+.|.+
T Consensus 44 ~d~iDLtdNdl~--~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~-~l~dl~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 44 FDAIDLTDNDLR--KLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQ-ELGDLDPLASCPKLEYLTL 120 (233)
T ss_pred cceecccccchh--hcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchh-hhhhcchhccCCccceeee
Confidence 344444444443 1223344445555555555554333333333444555555555443 221 111133445555555
Q ss_pred cccccccC---CCCCcCCCCcceEEEeec
Q 037027 128 SQNMFHGG---IPSALSKCTYLQILGLSF 153 (205)
Q Consensus 128 ~~~~~~~~---~~~~~~~~~~L~~l~l~~ 153 (205)
-+|.+... .---++.+++|+.||+..
T Consensus 121 l~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 121 LGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred cCCchhcccCceeEEEEecCcceEeehhh
Confidence 55544320 011233445555555444
No 55
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.86 E-value=0.00013 Score=47.51 Aligned_cols=122 Identities=24% Similarity=0.239 Sum_probs=48.5
Q ss_pred CCCCCCCCcEEEeecCcceeecCccccCCCCccEEEecCcccccCCCccccCCCCccEEEcccccCCcccCcccccCCCC
Q 037027 42 QLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPF 121 (205)
Q Consensus 42 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 121 (205)
.|.++.+|+.+.+.. .+......+|..+..|+.+.+... +.......+..+..++.+.+.. .+. .+....+..++.
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~-~i~~~~F~~~~~ 82 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLK-SIGDNAFSNCTN 82 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT--EE-TTTTTT-TT
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccc-cccccccccccc
Confidence 455555666666553 344445556666666666666553 3323334445555666666654 332 344444455666
Q ss_pred cceeeecccccccCCCCCcCCCCcceEEEeecceeecccCccccccCCc
Q 037027 122 LEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKL 170 (205)
Q Consensus 122 L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L 170 (205)
++.+.+..+ +.......+..+ +++.+.+..+ +.......+..+++|
T Consensus 83 l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~~-~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 83 LKNIDIPSN-ITEIGSSSFSNC-NLKEINIPSN-ITKIEENAFKNCTKL 128 (129)
T ss_dssp ECEEEETTT--BEEHTTTTTT--T--EEE-TTB--SS----GGG-----
T ss_pred ccccccCcc-ccEEchhhhcCC-CceEEEECCC-ccEECCccccccccC
Confidence 666666543 332333445555 6666665542 222333444444443
No 56
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.79 E-value=3.4e-05 Score=40.23 Aligned_cols=34 Identities=35% Similarity=0.554 Sum_probs=13.0
Q ss_pred ccEEEecCcccccCCCccccCCCCccEEEcccccC
Q 037027 73 LKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNAL 107 (205)
Q Consensus 73 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 107 (205)
|++|++.+|.++ .++..+..+++|+.|++++|.+
T Consensus 3 L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i 36 (44)
T PF12799_consen 3 LEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPI 36 (44)
T ss_dssp -SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCC
T ss_pred ceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCC
Confidence 344444444443 2222234444444444444443
No 57
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.70 E-value=1.9e-06 Score=56.00 Aligned_cols=105 Identities=23% Similarity=0.263 Sum_probs=65.6
Q ss_pred EEEEEecCCcccccCCCC---CCCCCCCcEEEeecCcceeecCccccCCCCccEEEecCcccccCCCccccCCCCccEEE
Q 037027 25 VTVFNVSGLNLTGTIPSQ---LGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLD 101 (205)
Q Consensus 25 l~~l~l~~~~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 101 (205)
+..++++.|.+. .+++. +.....|+..++++|.+.+..+.....++.++.+++.+|.+. ..|+.+..++.|+.++
T Consensus 29 ~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lN 106 (177)
T KOG4579|consen 29 LHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLN 106 (177)
T ss_pred hhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcc
Confidence 345666666554 22222 223345666777777777433333345557777888888777 5666677788888888
Q ss_pred cccccCCcccCcccccCCCCcceeeecccccc
Q 037027 102 LSYNALSGEIPANICSNLPFLEYISLSQNMFH 133 (205)
Q Consensus 102 l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~ 133 (205)
++.|.+. ..++-++ .+.++..|+..++.+.
T Consensus 107 l~~N~l~-~~p~vi~-~L~~l~~Lds~~na~~ 136 (177)
T KOG4579|consen 107 LRFNPLN-AEPRVIA-PLIKLDMLDSPENARA 136 (177)
T ss_pred cccCccc-cchHHHH-HHHhHHHhcCCCCccc
Confidence 8888776 5555453 3666677777666654
No 58
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.70 E-value=3.5e-06 Score=61.77 Aligned_cols=112 Identities=23% Similarity=0.204 Sum_probs=70.0
Q ss_pred CCCCCCCcEEEeecCcceeecC-ccc-cCCCCccEEEecCcccccC--CCccccCCCCccEEEcccccCCcccCcccccC
Q 037027 43 LGNLSSLQSLNLSFNRLSGSIP-SAT-FITHTLKYVDLRGNQLSGA--FPSFIFNKSSLQDLDLSYNALSGEIPANICSN 118 (205)
Q Consensus 43 ~~~~~~L~~L~l~~~~~~~~~~-~~~-~~l~~L~~L~l~~~~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~ 118 (205)
++..+.++.+.+.++.+..... ..| ..++.++.+++.+|.+++. ....+..+++|++|+++.|++...+ ......
T Consensus 41 v~s~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I-~~lp~p 119 (418)
T KOG2982|consen 41 VSSLRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDI-KSLPLP 119 (418)
T ss_pred eccccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCcc-ccCccc
Confidence 3334445566666665541111 111 3456788999999988742 2334457899999999999887333 323235
Q ss_pred CCCcceeeeccccccc-CCCCCcCCCCcceEEEeecce
Q 037027 119 LPFLEYISLSQNMFHG-GIPSALSKCTYLQILGLSFND 155 (205)
Q Consensus 119 ~~~L~~l~l~~~~~~~-~~~~~~~~~~~L~~l~l~~~~ 155 (205)
..+|+++-+.+..+.. .....+..++.++.++++.|.
T Consensus 120 ~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~ 157 (418)
T KOG2982|consen 120 LKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNS 157 (418)
T ss_pred ccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccch
Confidence 6788888887776542 223445667778888888873
No 59
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.44 E-value=0.0015 Score=50.98 Aligned_cols=133 Identities=15% Similarity=0.201 Sum_probs=73.9
Q ss_pred ceEEEEEecCCcccccCCCCCCCCCCCcEEEeecCcceeecCccccCCCCccEEEecCcc-cccCCCccccCCCCccEEE
Q 037027 23 HRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQ-LSGAFPSFIFNKSSLQDLD 101 (205)
Q Consensus 23 ~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~l~~l~~L~~L~ 101 (205)
.+++.|++++|.+. .+|. + -.+|+.|.+.++.-....+..+ ..+|+.|.+.+|. +. .+| .+|++|+
T Consensus 52 ~~l~~L~Is~c~L~-sLP~-L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~-sLP------~sLe~L~ 118 (426)
T PRK15386 52 RASGRLYIKDCDIE-SLPV-L--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS-GLP------ESVRSLE 118 (426)
T ss_pred cCCCEEEeCCCCCc-ccCC-C--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccc-ccc------cccceEE
Confidence 46778888888665 3442 1 2358888887754332344333 3578888888873 32 333 3466777
Q ss_pred cccccCCcccCcccccCCCCcceeeecccccc--cCCCCCcCCCCcceEEEeecceeecccCccccccCCceEEEeecc
Q 037027 102 LSYNALSGEIPANICSNLPFLEYISLSQNMFH--GGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRN 178 (205)
Q Consensus 102 l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~--~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~ 178 (205)
+..+... .+. .-.+.|+.|.+..++.. ...+.. -..+|+.|++.+|... ..|..+ ..+|++|++..+
T Consensus 119 L~~n~~~-~L~----~LPssLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i-~LP~~L--P~SLk~L~ls~n 187 (426)
T PRK15386 119 IKGSATD-SIK----NVPNGLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNI-ILPEKL--PESLQSITLHIE 187 (426)
T ss_pred eCCCCCc-ccc----cCcchHhheeccccccccccccccc--cCCcccEEEecCCCcc-cCcccc--cccCcEEEeccc
Confidence 7655443 221 11234666666433211 011111 1257899999888754 334333 368888888765
No 60
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.39 E-value=1.3e-05 Score=58.09 Aligned_cols=135 Identities=19% Similarity=0.165 Sum_probs=62.6
Q ss_pred CceEEEEEecCCcccccCCCC----CCCCCCCcEEEeecCcceeecCcc-------------ccCCCCccEEEecCcccc
Q 037027 22 SHRVTVFNVSGLNLTGTIPSQ----LGNLSSLQSLNLSFNRLSGSIPSA-------------TFITHTLKYVDLRGNQLS 84 (205)
Q Consensus 22 ~~~l~~l~l~~~~~~~~~~~~----~~~~~~L~~L~l~~~~~~~~~~~~-------------~~~l~~L~~L~l~~~~~~ 84 (205)
+|++..++++.|-+....|+. +++-..|.+|.+++|.+....-.. ...-|.|+++....|.+.
T Consensus 91 cp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRle 170 (388)
T COG5238 91 CPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLE 170 (388)
T ss_pred CCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhc
Confidence 345666666666554333332 334455666666666554111111 112345666666665544
Q ss_pred cCCC----ccccCCCCccEEEcccccCCcccC-ccc---ccCCCCcceeeeccccccc----CCCCCcCCCCcceEEEee
Q 037027 85 GAFP----SFIFNKSSLQDLDLSYNALSGEIP-ANI---CSNLPFLEYISLSQNMFHG----GIPSALSKCTYLQILGLS 152 (205)
Q Consensus 85 ~~~~----~~l~~l~~L~~L~l~~~~~~~~~~-~~~---~~~~~~L~~l~l~~~~~~~----~~~~~~~~~~~L~~l~l~ 152 (205)
.-.. ..+.....|+++.+..|.|..+.. .-. ...+.+|+.|++..|.++- .+..+++.++.|+.|.+.
T Consensus 171 ngs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~ln 250 (388)
T COG5238 171 NGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLN 250 (388)
T ss_pred cCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhcccc
Confidence 2111 112223355566666665542211 100 1223556666666665542 223444555556666666
Q ss_pred ccee
Q 037027 153 FNDF 156 (205)
Q Consensus 153 ~~~~ 156 (205)
+|-+
T Consensus 251 DCll 254 (388)
T COG5238 251 DCLL 254 (388)
T ss_pred chhh
Confidence 6654
No 61
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.38 E-value=3.2e-05 Score=64.26 Aligned_cols=133 Identities=21% Similarity=0.207 Sum_probs=79.6
Q ss_pred CCcEEEeecCcce--eecCccccCCCCccEEEecCcccccC-CCccccCCCCccEEEcccccCCcccCcccccCCCCcce
Q 037027 48 SLQSLNLSFNRLS--GSIPSATFITHTLKYVDLRGNQLSGA-FPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEY 124 (205)
Q Consensus 48 ~L~~L~l~~~~~~--~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 124 (205)
+|++|++.+...- +....--.-+|+|+.|.+.+-.+... +.....++++|..||+++++++ .+ ..+ +.+++|+.
T Consensus 123 nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~-nl-~GI-S~LknLq~ 199 (699)
T KOG3665|consen 123 NLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS-NL-SGI-SRLKNLQV 199 (699)
T ss_pred hhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCcc-Cc-HHH-hccccHHH
Confidence 5677777664322 11111123467888888877655422 2222345788888888888886 44 223 56778888
Q ss_pred eeecccccccC-CCCCcCCCCcceEEEeecceeeccc--C----ccccccCCceEEEeeccccccc
Q 037027 125 ISLSQNMFHGG-IPSALSKCTYLQILGLSFNDFSGAI--P----KEIGNVTKLKELYLVRNRLQGE 183 (205)
Q Consensus 125 l~l~~~~~~~~-~~~~~~~~~~L~~l~l~~~~~~~~~--~----~~~~~~~~L~~l~l~~~~l~~~ 183 (205)
|.+.+-.+... .-..+..+++|+.||++........ . ..-..+|.|+.|+.+++.+.+.
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~ 265 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEE 265 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHH
Confidence 87776665431 1134567888888888886543211 1 1123467888888888777654
No 62
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.33 E-value=9.7e-05 Score=53.14 Aligned_cols=87 Identities=20% Similarity=0.191 Sum_probs=38.1
Q ss_pred CCCCCCcEEEeecCcceeecCccccCCCCccEEEecCc--ccccCCCccccCCCCccEEEcccccCCcccC-cccccCCC
Q 037027 44 GNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGN--QLSGAFPSFIFNKSSLQDLDLSYNALSGEIP-ANICSNLP 120 (205)
Q Consensus 44 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~--~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~~~~~ 120 (205)
..+.+++.+++.+..++ ....+..+++|+.|.++.| .+..-+......+++|+++++++|++.. +. ..-...+.
T Consensus 40 d~~~~le~ls~~n~glt--t~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~-lstl~pl~~l~ 116 (260)
T KOG2739|consen 40 DEFVELELLSVINVGLT--TLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD-LSTLRPLKELE 116 (260)
T ss_pred ccccchhhhhhhcccee--ecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc-ccccchhhhhc
Confidence 33444555554444443 2223445555555555555 2322222222334555555555555531 11 01112334
Q ss_pred Ccceeeecccccc
Q 037027 121 FLEYISLSQNMFH 133 (205)
Q Consensus 121 ~L~~l~l~~~~~~ 133 (205)
+|..|++++|..+
T Consensus 117 nL~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 117 NLKSLDLFNCSVT 129 (260)
T ss_pred chhhhhcccCCcc
Confidence 4555555555443
No 63
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.28 E-value=0.0023 Score=49.93 Aligned_cols=54 Identities=15% Similarity=0.222 Sum_probs=26.7
Q ss_pred CCCCcEEEeecCcceeecCccccCCCCccEEEecCcccccCCCccccCCCCccEEEcccc
Q 037027 46 LSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYN 105 (205)
Q Consensus 46 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 105 (205)
+.+++.|++++|.+. .+| ....+|++|.+.+|.-...+|..+ ..+|++|.+.+|
T Consensus 51 ~~~l~~L~Is~c~L~-sLP---~LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~C 104 (426)
T PRK15386 51 ARASGRLYIKDCDIE-SLP---VLPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHC 104 (426)
T ss_pred hcCCCEEEeCCCCCc-ccC---CCCCCCcEEEccCCCCcccCCchh--hhhhhheEccCc
Confidence 355666666666554 222 122346666666544322334333 235666666655
No 64
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.07 E-value=1.3e-05 Score=58.35 Aligned_cols=100 Identities=29% Similarity=0.398 Sum_probs=69.9
Q ss_pred CCCccEEEcccccCCcccCcccccCCCCcceeeecccccccCCCCCcCCCCcceEEEeecceeeccc-CccccccCCceE
Q 037027 94 KSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAI-PKEIGNVTKLKE 172 (205)
Q Consensus 94 l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~-~~~~~~~~~L~~ 172 (205)
+.+.+.|+..++.++ .+ +++..++.|+.|.++-|+|+. ...+..|++|..|.|..|.+.+.. -.-+.++++|+.
T Consensus 18 l~~vkKLNcwg~~L~-DI--sic~kMp~lEVLsLSvNkIss--L~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~ 92 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLD-DI--SICEKMPLLEVLSLSVNKISS--LAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRT 92 (388)
T ss_pred HHHhhhhcccCCCcc-HH--HHHHhcccceeEEeecccccc--chhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhh
Confidence 445677888888886 23 456788999999999998864 345778899999999888775321 134467889999
Q ss_pred EEeecccccccCc-----hhccCCCCCcEEe
Q 037027 173 LYLVRNRLQGEIP-----RELSNLAELELMS 198 (205)
Q Consensus 173 l~l~~~~l~~~~~-----~~l~~~~~L~~l~ 198 (205)
|+|..|+=-+..+ .++.-+|+|+.||
T Consensus 93 LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 93 LWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred HhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 9998885443222 4455566666554
No 65
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.82 E-value=2.4e-05 Score=57.01 Aligned_cols=101 Identities=23% Similarity=0.172 Sum_probs=70.7
Q ss_pred CCCCccEEEecCcccccCCCccccCCCCccEEEcccccCCcccCcccccCCCCcceeeecccccccCCC-CCcCCCCcce
Q 037027 69 ITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIP-SALSKCTYLQ 147 (205)
Q Consensus 69 ~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~-~~~~~~~~L~ 147 (205)
.+.+++.|+..+|.+.++ ....+++.|+.|.++-|.|+ .+.. +..+..|+.+++-.|.|.+... .-+.++++|+
T Consensus 17 dl~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIs-sL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr 91 (388)
T KOG2123|consen 17 DLENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKIS-SLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLR 91 (388)
T ss_pred HHHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccc-cchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhh
Confidence 355677888888887632 23346888999999999987 5543 2557889999999998864211 3467889999
Q ss_pred EEEeecceeecccC-----ccccccCCceEEE
Q 037027 148 ILGLSFNDFSGAIP-----KEIGNVTKLKELY 174 (205)
Q Consensus 148 ~l~l~~~~~~~~~~-----~~~~~~~~L~~l~ 174 (205)
.|.|..|+..+..+ ..+..+|+|+.|+
T Consensus 92 ~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 92 TLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 99998887654333 2344567777765
No 66
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.72 E-value=0.00049 Score=49.61 Aligned_cols=107 Identities=21% Similarity=0.139 Sum_probs=64.5
Q ss_pred ccccCCCCccEEEecCcccccCCCccccCCCCccEEEcccc--cCCcccCcccccCCCCcceeeeccccccc-CCCCCcC
Q 037027 65 SATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYN--ALSGEIPANICSNLPFLEYISLSQNMFHG-GIPSALS 141 (205)
Q Consensus 65 ~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~--~~~~~~~~~~~~~~~~L~~l~l~~~~~~~-~~~~~~~ 141 (205)
+....+..++.+.+.++..+. -..+..+++|+.|.++.| .+.+.+.... ...++|++++++.|.++. .....+.
T Consensus 37 gl~d~~~~le~ls~~n~gltt--~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~-e~~P~l~~l~ls~Nki~~lstl~pl~ 113 (260)
T KOG2739|consen 37 GLTDEFVELELLSVINVGLTT--LTNFPKLPKLKKLELSDNYRRVSGGLEVLA-EKAPNLKVLNLSGNKIKDLSTLRPLK 113 (260)
T ss_pred cccccccchhhhhhhccceee--cccCCCcchhhhhcccCCcccccccceehh-hhCCceeEEeecCCccccccccchhh
Confidence 333445567777776666542 234456788999999988 4443333322 455889999999998863 1112345
Q ss_pred CCCcceEEEeecceeeccc---CccccccCCceEEE
Q 037027 142 KCTYLQILGLSFNDFSGAI---PKEIGNVTKLKELY 174 (205)
Q Consensus 142 ~~~~L~~l~l~~~~~~~~~---~~~~~~~~~L~~l~ 174 (205)
.+.+|..|++.+|...... -..+.-+++|.+++
T Consensus 114 ~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD 149 (260)
T KOG2739|consen 114 ELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLD 149 (260)
T ss_pred hhcchhhhhcccCCccccccHHHHHHHHhhhhcccc
Confidence 5667788888888654311 12334456666654
No 67
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.21 E-value=0.00026 Score=49.16 Aligned_cols=80 Identities=19% Similarity=0.184 Sum_probs=48.9
Q ss_pred cceeeecccccccCCCCCcCCCCcceEEEeeccee-ecccCccc-cccCCceEEEeecc-cccccCchhccCCCCCcEEe
Q 037027 122 LEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDF-SGAIPKEI-GNVTKLKELYLVRN-RLQGEIPRELSNLAELELMS 198 (205)
Q Consensus 122 L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~-~~~~~~~~-~~~~~L~~l~l~~~-~l~~~~~~~l~~~~~L~~l~ 198 (205)
++.++-+++.|..+.-+.+..++.++.|.+.+|.- .+..-..+ ...++|+.|++++| .|++-....+..+++|+.|.
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~ 182 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLH 182 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence 56666667766655555666667777777777642 22111111 23567777777777 57766566666777777666
Q ss_pred ccC
Q 037027 199 LFD 201 (205)
Q Consensus 199 l~~ 201 (205)
+.+
T Consensus 183 l~~ 185 (221)
T KOG3864|consen 183 LYD 185 (221)
T ss_pred hcC
Confidence 654
No 68
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.68 E-value=0.0055 Score=26.56 Aligned_cols=19 Identities=42% Similarity=0.524 Sum_probs=10.6
Q ss_pred ceEEEeecccccccCchhcc
Q 037027 170 LKELYLVRNRLQGEIPRELS 189 (205)
Q Consensus 170 L~~l~l~~~~l~~~~~~~l~ 189 (205)
|++|++++|+++ .+|..|+
T Consensus 2 L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp ESEEEETSSEES-EEGTTTT
T ss_pred ccEEECCCCcCE-eCChhhc
Confidence 556666666666 4444443
No 69
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=95.24 E-value=0.0001 Score=56.50 Aligned_cols=179 Identities=17% Similarity=0.124 Sum_probs=93.2
Q ss_pred eEEEEEecCCcccccC--CCCCCCCCCCcEEEeecCc-ceeecCc-cccCCCCccEEEecCcc-cccCCCccc-cCCCCc
Q 037027 24 RVTVFNVSGLNLTGTI--PSQLGNLSSLQSLNLSFNR-LSGSIPS-ATFITHTLKYVDLRGNQ-LSGAFPSFI-FNKSSL 97 (205)
Q Consensus 24 ~l~~l~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~-~~~~~~~-~~~~l~~L~~L~l~~~~-~~~~~~~~l-~~l~~L 97 (205)
.++.|.++|+.-.+.. ......++++++|.+.++. +++.... .-..+.+++++++..|. +++..-..+ ..+++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 5778888888654332 2334568889998888875 3322211 22456778888888854 333222222 346788
Q ss_pred cEEEcccc-cCCcccCcccccCCCCcceeeeccc--------------------------c-cccCCC-CCcCCCCcceE
Q 037027 98 QDLDLSYN-ALSGEIPANICSNLPFLEYISLSQN--------------------------M-FHGGIP-SALSKCTYLQI 148 (205)
Q Consensus 98 ~~L~l~~~-~~~~~~~~~~~~~~~~L~~l~l~~~--------------------------~-~~~~~~-~~~~~~~~L~~ 148 (205)
++++++++ .+++.....+.++...++.+...+| . +++... ..-..+..|+.
T Consensus 219 ~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~ 298 (483)
T KOG4341|consen 219 KYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQV 298 (483)
T ss_pred HHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhh
Confidence 88888877 3332222223344444444443333 1 111100 01122345556
Q ss_pred EEeeccee-eccc-CccccccCCceEEEeeccc-ccccCchhcc-CCCCCcEEeccCC
Q 037027 149 LGLSFNDF-SGAI-PKEIGNVTKLKELYLVRNR-LQGEIPRELS-NLAELELMSLFDN 202 (205)
Q Consensus 149 l~l~~~~~-~~~~-~~~~~~~~~L~~l~l~~~~-l~~~~~~~l~-~~~~L~~l~l~~n 202 (205)
++.+++.. .+.. ...-.++.+|+.+-+.+|+ +++.....++ ++++|+.+++..+
T Consensus 299 l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~ 356 (483)
T KOG4341|consen 299 LCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEEC 356 (483)
T ss_pred hcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhccccc
Confidence 65555432 1111 1112455677777777773 5544444443 5667777776654
No 70
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=94.89 E-value=0.0021 Score=51.50 Aligned_cols=86 Identities=23% Similarity=0.102 Sum_probs=43.0
Q ss_pred CCceEEEEEecCC-cccccC----CCCCCCCCCCcEEEeecCc-ceeecCcccc-CCCCccEEEecCcc-cccCCCc-cc
Q 037027 21 HSHRVTVFNVSGL-NLTGTI----PSQLGNLSSLQSLNLSFNR-LSGSIPSATF-ITHTLKYVDLRGNQ-LSGAFPS-FI 91 (205)
Q Consensus 21 ~~~~l~~l~l~~~-~~~~~~----~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~-~l~~L~~L~l~~~~-~~~~~~~-~l 91 (205)
..+.++.|+++++ ...... ......+++++.+++..+. +++....++. .+++|+.|.+.+|. +++..-. ..
T Consensus 212 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~ 291 (482)
T KOG1947|consen 212 KCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIA 291 (482)
T ss_pred hCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHH
Confidence 3446666777652 111111 1122345667777777665 4433333322 25677777766665 3322111 12
Q ss_pred cCCCCccEEEccccc
Q 037027 92 FNKSSLQDLDLSYNA 106 (205)
Q Consensus 92 ~~l~~L~~L~l~~~~ 106 (205)
..++.|++|++..+.
T Consensus 292 ~~~~~L~~L~l~~c~ 306 (482)
T KOG1947|consen 292 ERCPSLRELDLSGCH 306 (482)
T ss_pred HhcCcccEEeeecCc
Confidence 345667777777663
No 71
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=93.86 E-value=2.5e-05 Score=62.18 Aligned_cols=180 Identities=23% Similarity=0.269 Sum_probs=109.8
Q ss_pred EEEEEecCCccccc----CCCCCCCCCCCcEEEeecCcceeecCc----cccCC-CCccEEEecCcccccCC----Cccc
Q 037027 25 VTVFNVSGLNLTGT----IPSQLGNLSSLQSLNLSFNRLSGSIPS----ATFIT-HTLKYVDLRGNQLSGAF----PSFI 91 (205)
Q Consensus 25 l~~l~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~----~~~~l-~~L~~L~l~~~~~~~~~----~~~l 91 (205)
+..+++.+|.+... ....+...+.|..+++.+|.+.+.... .+... ..+++|.+..|.++... ...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 55677777776533 223344567788888888887633222 22222 45777788777776432 2233
Q ss_pred cCCCCccEEEcccccCCcc----cCccc---ccCCCCcceeeecccccccC----CCCCcCCCCc-ceEEEeecceeecc
Q 037027 92 FNKSSLQDLDLSYNALSGE----IPANI---CSNLPFLEYISLSQNMFHGG----IPSALSKCTY-LQILGLSFNDFSGA 159 (205)
Q Consensus 92 ~~l~~L~~L~l~~~~~~~~----~~~~~---~~~~~~L~~l~l~~~~~~~~----~~~~~~~~~~-L~~l~l~~~~~~~~ 159 (205)
....+++.++++.|.+... +.... +....+++++.+.+|.++.. ....+...+. +..+++..|.+.+.
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~ 248 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV 248 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence 3466788888888866311 11111 12356688888888876531 1122334444 56688888877543
Q ss_pred c----Ccccccc-CCceEEEeecccccc----cCchhccCCCCCcEEeccCCcC
Q 037027 160 I----PKEIGNV-TKLKELYLVRNRLQG----EIPRELSNLAELELMSLFDNEL 204 (205)
Q Consensus 160 ~----~~~~~~~-~~L~~l~l~~~~l~~----~~~~~l~~~~~L~~l~l~~n~l 204 (205)
. .+.+... +.++++++..|.+++ ..++.+..++.++.+.+..|++
T Consensus 249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l 302 (478)
T KOG4308|consen 249 GVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPL 302 (478)
T ss_pred HHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcc
Confidence 2 2333334 577889999998875 3456666778888888888876
No 72
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.64 E-value=0.054 Score=21.76 Aligned_cols=12 Identities=33% Similarity=0.526 Sum_probs=5.6
Q ss_pred CCcEEeccCCcC
Q 037027 193 ELELMSLFDNEL 204 (205)
Q Consensus 193 ~L~~l~l~~n~l 204 (205)
+|+.|++++|+|
T Consensus 2 ~L~~L~l~~n~L 13 (17)
T PF13504_consen 2 NLRTLDLSNNRL 13 (17)
T ss_dssp T-SEEEETSS--
T ss_pred ccCEEECCCCCC
Confidence 456666666654
No 73
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=93.33 E-value=0.0059 Score=48.89 Aligned_cols=129 Identities=22% Similarity=0.163 Sum_probs=61.7
Q ss_pred CCCccEEEecCcccccC--CCccccCCCCccEEEcccc-c-CC--cccCcccccCCCCcceeeecccc-cccCCCCCcC-
Q 037027 70 THTLKYVDLRGNQLSGA--FPSFIFNKSSLQDLDLSYN-A-LS--GEIPANICSNLPFLEYISLSQNM-FHGGIPSALS- 141 (205)
Q Consensus 70 l~~L~~L~l~~~~~~~~--~~~~l~~l~~L~~L~l~~~-~-~~--~~~~~~~~~~~~~L~~l~l~~~~-~~~~~~~~~~- 141 (205)
.+.|+.+.+.++.-... ........+.|+.|++..+ . +. ..........++.++.+++.++. +++..-..+.
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 45666666666543212 1223334566777776652 1 11 00111122344666777777766 4432222222
Q ss_pred CCCcceEEEeecce-eeccc-CccccccCCceEEEeecccc-ccc-CchhccCCCCCcEEe
Q 037027 142 KCTYLQILGLSFND-FSGAI-PKEIGNVTKLKELYLVRNRL-QGE-IPRELSNLAELELMS 198 (205)
Q Consensus 142 ~~~~L~~l~l~~~~-~~~~~-~~~~~~~~~L~~l~l~~~~l-~~~-~~~~l~~~~~L~~l~ 198 (205)
.+++|+.|.+.+|. +.+.. ......++.|++|++++|.. ++. +.....++++++.+.
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~ 327 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELK 327 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhh
Confidence 26677777766665 33222 22234466677777777643 222 222233455554443
No 74
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=93.09 E-value=0.028 Score=43.70 Aligned_cols=133 Identities=21% Similarity=0.150 Sum_probs=70.0
Q ss_pred CCCccEEEecCcccc-cCCCcc-ccCCCCccEEEcccccC-CcccCcccccCCCCcceeeeccccccc--CCCCCcCCCC
Q 037027 70 THTLKYVDLRGNQLS-GAFPSF-IFNKSSLQDLDLSYNAL-SGEIPANICSNLPFLEYISLSQNMFHG--GIPSALSKCT 144 (205)
Q Consensus 70 l~~L~~L~l~~~~~~-~~~~~~-l~~l~~L~~L~l~~~~~-~~~~~~~~~~~~~~L~~l~l~~~~~~~--~~~~~~~~~~ 144 (205)
+..||++..+++... +..-.. ..+..+|+.+.+..++. ++.....+-++++.|+.+++.++.... .+...-.+++
T Consensus 293 c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~ 372 (483)
T KOG4341|consen 293 CHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCP 372 (483)
T ss_pred hhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCc
Confidence 445666666655321 111111 12346677777777642 211122233456677777777764321 1222234567
Q ss_pred cceEEEeecceee-cccCccc----cccCCceEEEeeccc-ccccCchhccCCCCCcEEeccCC
Q 037027 145 YLQILGLSFNDFS-GAIPKEI----GNVTKLKELYLVRNR-LQGEIPRELSNLAELELMSLFDN 202 (205)
Q Consensus 145 ~L~~l~l~~~~~~-~~~~~~~----~~~~~L~~l~l~~~~-l~~~~~~~l~~~~~L~~l~l~~n 202 (205)
.|+.+.+++|... +.....+ .....++.+.+..++ +++...+.+..+++|+.+++.++
T Consensus 373 ~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~ 436 (483)
T KOG4341|consen 373 RLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDC 436 (483)
T ss_pred hhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeech
Confidence 7777777776542 2211111 234566677777774 34455566667777777777665
No 75
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.01 E-value=0.0062 Score=42.56 Aligned_cols=33 Identities=15% Similarity=0.129 Sum_probs=14.3
Q ss_pred ccEEEecCcccccCCCccccCCCCccEEEcccc
Q 037027 73 LKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYN 105 (205)
Q Consensus 73 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 105 (205)
++.++-+++.+...--+.+..+..++.|.+.++
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~c 135 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANC 135 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccc
Confidence 444444444443332333344444444444444
No 76
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=92.44 E-value=0.023 Score=25.06 Aligned_cols=16 Identities=31% Similarity=0.466 Sum_probs=7.3
Q ss_pred CCceEEEeeccccccc
Q 037027 168 TKLKELYLVRNRLQGE 183 (205)
Q Consensus 168 ~~L~~l~l~~~~l~~~ 183 (205)
++|++|++++|.+.+.
T Consensus 2 ~~L~~L~l~~n~i~~~ 17 (24)
T PF13516_consen 2 PNLETLDLSNNQITDE 17 (24)
T ss_dssp TT-SEEE-TSSBEHHH
T ss_pred CCCCEEEccCCcCCHH
Confidence 4455555555555543
No 77
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=92.26 E-value=0.1 Score=26.77 Aligned_cols=18 Identities=61% Similarity=1.438 Sum_probs=12.2
Q ss_pred CCCCCC--CCCCccceeeec
Q 037027 2 KNWNTS--SPVCNWTGVTCD 19 (205)
Q Consensus 2 ~~~~~~--~~~c~~~~~~~~ 19 (205)
..|... .++|.|.|+.|.
T Consensus 24 ~~W~~~~~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 24 SSWNPSSDSDPCSWSGVTCD 43 (43)
T ss_dssp TT--TT--S-CCCSTTEEE-
T ss_pred ccCCCcCCCCCeeeccEEeC
Confidence 458887 799999999994
No 78
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=91.53 E-value=0.16 Score=22.76 Aligned_cols=21 Identities=33% Similarity=0.458 Sum_probs=12.4
Q ss_pred CCceEEEeecccccccCchhc
Q 037027 168 TKLKELYLVRNRLQGEIPREL 188 (205)
Q Consensus 168 ~~L~~l~l~~~~l~~~~~~~l 188 (205)
++|++|++.+|.++...+.+|
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCCcCCHHHc
Confidence 456777777777764333333
No 79
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=91.53 E-value=0.16 Score=22.76 Aligned_cols=21 Identities=33% Similarity=0.458 Sum_probs=12.4
Q ss_pred CCceEEEeecccccccCchhc
Q 037027 168 TKLKELYLVRNRLQGEIPREL 188 (205)
Q Consensus 168 ~~L~~l~l~~~~l~~~~~~~l 188 (205)
++|++|++.+|.++...+.+|
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCCcCCHHHc
Confidence 456777777777764333333
No 80
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=85.29 E-value=0.76 Score=21.03 Aligned_cols=13 Identities=31% Similarity=0.457 Sum_probs=8.5
Q ss_pred CCCcEEeccCCcC
Q 037027 192 AELELMSLFDNEL 204 (205)
Q Consensus 192 ~~L~~l~l~~n~l 204 (205)
++|+.|++++|.+
T Consensus 2 ~~L~~LdL~~N~i 14 (28)
T smart00368 2 PSLRELDLSNNKL 14 (28)
T ss_pred CccCEEECCCCCC
Confidence 4566777777765
No 81
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=84.47 E-value=0.96 Score=20.43 Aligned_cols=13 Identities=31% Similarity=0.501 Sum_probs=7.1
Q ss_pred CCCcEEeccCCcC
Q 037027 192 AELELMSLFDNEL 204 (205)
Q Consensus 192 ~~L~~l~l~~n~l 204 (205)
.+|+.|++++|.|
T Consensus 2 ~~L~~L~L~~NkI 14 (26)
T smart00365 2 TNLEELDLSQNKI 14 (26)
T ss_pred CccCEEECCCCcc
Confidence 3455555555554
No 82
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=78.96 E-value=0.041 Score=39.63 Aligned_cols=84 Identities=23% Similarity=0.141 Sum_probs=52.8
Q ss_pred CCCccEEEcccccCCcccCcccccCCCCcceeeecccccccCCCCCcCCCCcceEEEeecceeecccCccccccCCceEE
Q 037027 94 KSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKEL 173 (205)
Q Consensus 94 l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l 173 (205)
......|+++.|.+- .+...+ +.+..+..++++.+.+. ..|+.+.....+..+++..|... ..|.+....++++++
T Consensus 41 ~kr~tvld~~s~r~v-n~~~n~-s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~ 116 (326)
T KOG0473|consen 41 FKRVTVLDLSSNRLV-NLGKNF-SILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKN 116 (326)
T ss_pred cceeeeehhhhhHHH-hhccch-HHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchh
Confidence 345556666666553 333333 45566677777777765 55666666666666666666554 566677777777777
Q ss_pred Eeeccccc
Q 037027 174 YLVRNRLQ 181 (205)
Q Consensus 174 ~l~~~~l~ 181 (205)
+.-++.+.
T Consensus 117 e~k~~~~~ 124 (326)
T KOG0473|consen 117 EQKKTEFF 124 (326)
T ss_pred hhccCcch
Confidence 77777654
No 83
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=73.49 E-value=0.037 Score=39.89 Aligned_cols=60 Identities=18% Similarity=0.113 Sum_probs=27.5
Q ss_pred CCCccEEEcccccCCcccCcccccCCCCcceeeecccccccCCCCCcCCCCcceEEEeeccee
Q 037027 94 KSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDF 156 (205)
Q Consensus 94 l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~ 156 (205)
++.+..++++.+.+. .++.+. .....+..++...|... ..|.++...+.++.+++..+.+
T Consensus 64 ~t~~~rl~~sknq~~-~~~~d~-~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k~~~~ 123 (326)
T KOG0473|consen 64 LTRLVRLDLSKNQIK-FLPKDA-KQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQKKTEF 123 (326)
T ss_pred HHHHHHHhccHhhHh-hChhhH-HHHHHHHHHHhhccchh-hCCccccccCCcchhhhccCcc
Confidence 344444445555443 444333 33333444444444443 3455555555555555555443
No 84
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=69.92 E-value=3.4 Score=18.29 Aligned_cols=13 Identities=15% Similarity=0.105 Sum_probs=8.8
Q ss_pred CCCCcEEeccCCc
Q 037027 191 LAELELMSLFDNE 203 (205)
Q Consensus 191 ~~~L~~l~l~~n~ 203 (205)
+++|++|++++|+
T Consensus 1 c~~L~~L~l~~C~ 13 (26)
T smart00367 1 CPNLRELDLSGCT 13 (26)
T ss_pred CCCCCEeCCCCCC
Confidence 4567777777763
No 85
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=67.11 E-value=3.8 Score=18.52 Aligned_cols=17 Identities=41% Similarity=0.679 Sum_probs=11.2
Q ss_pred CCceEEEeecccccccCc
Q 037027 168 TKLKELYLVRNRLQGEIP 185 (205)
Q Consensus 168 ~~L~~l~l~~~~l~~~~~ 185 (205)
++|+.|+++.|+++ .+|
T Consensus 2 ~~L~~L~vs~N~Lt-~LP 18 (26)
T smart00364 2 PSLKELNVSNNQLT-SLP 18 (26)
T ss_pred cccceeecCCCccc-cCc
Confidence 35677777777776 444
No 86
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=55.07 E-value=5.8 Score=32.59 Aligned_cols=64 Identities=30% Similarity=0.220 Sum_probs=30.1
Q ss_pred CCCCcceeeecccccccC--CCCCcCCCCcceEEEeecc--eeecccCccccccCCceEEEeeccccc
Q 037027 118 NLPFLEYISLSQNMFHGG--IPSALSKCTYLQILGLSFN--DFSGAIPKEIGNVTKLKELYLVRNRLQ 181 (205)
Q Consensus 118 ~~~~L~~l~l~~~~~~~~--~~~~~~~~~~L~~l~l~~~--~~~~~~~~~~~~~~~L~~l~l~~~~l~ 181 (205)
+.+.+..+++++|++... +...-...++|..|+|++| .+.......-.....|++|.+.||++.
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc 283 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLC 283 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccc
Confidence 345566666666655321 1111123356667777776 222111101112345666677777664
No 87
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=54.15 E-value=4 Score=33.47 Aligned_cols=62 Identities=24% Similarity=0.195 Sum_probs=36.2
Q ss_pred CCCccEEEcccccCCcccC--cccccCCCCcceeeecccccccCCC---CCcCCCCcceEEEeecceee
Q 037027 94 KSSLQDLDLSYNALSGEIP--ANICSNLPFLEYISLSQNMFHGGIP---SALSKCTYLQILGLSFNDFS 157 (205)
Q Consensus 94 l~~L~~L~l~~~~~~~~~~--~~~~~~~~~L~~l~l~~~~~~~~~~---~~~~~~~~L~~l~l~~~~~~ 157 (205)
.+.+..+.+++|++. .+. ..+....|+|.+|+|++|...-... +.++. ..|+.|-+.+|++.
T Consensus 217 ~p~i~sl~lsnNrL~-~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~-l~Leel~l~GNPlc 283 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLY-HLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKG-LPLEELVLEGNPLC 283 (585)
T ss_pred Ccceeeeecccchhh-chhhhhHHHHhcchhheeecccchhhhcchhhhhhhcC-CCHHHeeecCCccc
Confidence 456667778887664 322 1233456788888888883221111 12222 34778888888774
No 88
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=22.33 E-value=54 Score=32.98 Aligned_cols=32 Identities=47% Similarity=0.612 Sum_probs=25.2
Q ss_pred EcccccCCcccCcccccCCCCcceeeecccccc
Q 037027 101 DLSYNALSGEIPANICSNLPFLEYISLSQNMFH 133 (205)
Q Consensus 101 ~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~ 133 (205)
+|++|+|. .++...|..+++|+.|+|.+|.+.
T Consensus 1 DLSnN~Ls-tLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKIS-TIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCC-ccChHHhccCCCceEEEeeCCccc
Confidence 46778887 778777788888888888888765
No 89
>smart00446 LRRcap occurring C-terminal to leucine-rich repeats. A motif occurring C-terminal to leucine-rich repeats in "sds22-like" and "typical" LRR-containing proteins.
Probab=21.71 E-value=35 Score=15.38 Aligned_cols=15 Identities=13% Similarity=0.217 Sum_probs=10.8
Q ss_pred hccCCCCCcEEeccC
Q 037027 187 ELSNLAELELMSLFD 201 (205)
Q Consensus 187 ~l~~~~~L~~l~l~~ 201 (205)
++..+|+|+.||...
T Consensus 8 Vi~~LPqL~~LD~~~ 22 (26)
T smart00446 8 VIRLLPQLRKLDXXX 22 (26)
T ss_pred HHHHCCccceecccc
Confidence 556778888888654
Done!