Query 037027
Match_columns 205
No_of_seqs 114 out of 2287
Neff 11.0
Searched_HMMs 29240
Date Mon Mar 25 13:04:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037027.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037027hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ogq_A PGIP-2, polygalacturona 100.0 2.2E-29 7.5E-34 188.7 16.8 201 2-204 25-233 (313)
2 2o6q_A Variable lymphocyte rec 99.9 6.7E-26 2.3E-30 166.4 17.9 181 23-204 37-217 (270)
3 1ozn_A Reticulon 4 receptor; N 99.9 9.3E-25 3.2E-29 161.5 17.0 182 22-204 31-213 (285)
4 1ozn_A Reticulon 4 receptor; N 99.9 6.3E-25 2.1E-29 162.4 15.8 184 20-204 53-237 (285)
5 4fcg_A Uncharacterized protein 99.9 1.9E-25 6.6E-30 168.3 13.0 193 5-202 55-263 (328)
6 4eco_A Uncharacterized protein 99.9 3.3E-26 1.1E-30 186.2 8.7 197 3-204 59-389 (636)
7 3m19_A Variable lymphocyte rec 99.9 1.1E-24 3.9E-29 158.2 15.4 189 10-205 4-192 (251)
8 3rgz_A Protein brassinosteroid 99.9 1.3E-24 4.4E-29 180.3 16.5 198 2-204 31-259 (768)
9 1ogq_A PGIP-2, polygalacturona 99.9 6.1E-25 2.1E-29 164.6 11.4 182 21-204 74-280 (313)
10 2z66_A Variable lymphocyte rec 99.9 4.6E-24 1.6E-28 159.3 14.2 197 7-204 3-235 (306)
11 3rgz_A Protein brassinosteroid 99.9 2.5E-24 8.6E-29 178.6 13.4 183 22-204 465-716 (768)
12 2z80_A TOLL-like receptor 2, v 99.9 3.7E-24 1.3E-28 162.8 13.1 200 4-205 23-235 (353)
13 4fcg_A Uncharacterized protein 99.9 4.1E-24 1.4E-28 161.0 12.9 179 21-204 102-289 (328)
14 2xwt_C Thyrotropin receptor; s 99.9 2.1E-23 7E-28 150.5 15.3 199 3-205 2-218 (239)
15 4ecn_A Leucine-rich repeat pro 99.9 1.7E-24 5.8E-29 180.3 9.4 197 3-204 285-607 (876)
16 3rfs_A Internalin B, repeat mo 99.9 6.8E-23 2.3E-27 150.6 16.1 180 21-205 39-218 (272)
17 3o6n_A APL1; leucine-rich repe 99.9 2.4E-23 8.3E-28 160.3 13.4 181 23-204 45-284 (390)
18 1p9a_G Platelet glycoprotein I 99.9 6.8E-23 2.3E-27 151.8 15.2 178 22-204 30-207 (290)
19 2z62_A TOLL-like receptor 4, v 99.9 5.2E-23 1.8E-27 151.4 14.3 183 22-205 27-237 (276)
20 2z66_A Variable lymphocyte rec 99.9 1.8E-23 6.2E-28 156.0 11.8 182 22-204 77-260 (306)
21 3zyi_A Leucine-rich repeat-con 99.9 7E-23 2.4E-27 160.6 15.4 179 23-204 75-278 (452)
22 3zyj_A Leucine-rich repeat-con 99.9 6E-23 2.1E-27 160.4 14.9 179 23-204 64-267 (440)
23 2o6q_A Variable lymphocyte rec 99.9 1.7E-22 5.8E-27 148.3 16.3 193 8-205 2-194 (270)
24 3zyi_A Leucine-rich repeat-con 99.9 1E-22 3.4E-27 159.7 15.3 174 26-205 57-255 (452)
25 3zyj_A Leucine-rich repeat-con 99.9 1.9E-22 6.5E-27 157.6 16.0 181 21-204 86-291 (440)
26 3oja_B Anopheles plasmodium-re 99.9 8.2E-23 2.8E-27 165.3 13.7 180 24-204 52-290 (597)
27 2id5_A Lingo-1, leucine rich r 99.9 1.8E-22 6.3E-27 159.1 14.9 181 22-203 31-211 (477)
28 2z81_A CD282 antigen, TOLL-lik 99.9 1.7E-22 5.7E-27 161.8 14.1 182 23-204 26-208 (549)
29 2ft3_A Biglycan; proteoglycan, 99.9 4.8E-22 1.6E-26 150.0 15.4 192 9-205 31-277 (332)
30 1p9a_G Platelet glycoprotein I 99.9 9.1E-22 3.1E-26 145.8 15.6 178 21-205 8-185 (290)
31 3v47_A TOLL-like receptor 5B a 99.9 4.1E-22 1.4E-26 156.2 14.1 115 89-204 293-407 (455)
32 3v47_A TOLL-like receptor 5B a 99.9 6.4E-22 2.2E-26 155.1 15.0 135 23-157 30-167 (455)
33 1xku_A Decorin; proteoglycan, 99.9 2.1E-21 7.1E-26 146.4 16.5 193 9-205 29-253 (330)
34 2id5_A Lingo-1, leucine rich r 99.9 1.4E-21 4.7E-26 154.1 15.9 112 21-133 54-165 (477)
35 1xku_A Decorin; proteoglycan, 99.9 2.3E-21 7.8E-26 146.1 16.1 181 20-205 73-276 (330)
36 3vq2_A TLR4, TOLL-like recepto 99.9 6.1E-22 2.1E-26 160.3 13.1 179 24-204 377-557 (606)
37 2z80_A TOLL-like receptor 2, v 99.9 3.3E-22 1.1E-26 152.1 10.8 185 19-204 72-313 (353)
38 3m19_A Variable lymphocyte rec 99.9 2.4E-21 8.2E-26 140.7 14.5 161 22-183 34-194 (251)
39 3vq2_A TLR4, TOLL-like recepto 99.9 8.7E-22 3E-26 159.4 13.5 183 21-205 348-534 (606)
40 3o6n_A APL1; leucine-rich repe 99.9 2.7E-21 9.1E-26 148.9 15.3 180 23-204 69-307 (390)
41 3t6q_A CD180 antigen; protein- 99.9 1.1E-21 3.8E-26 158.8 13.7 180 24-204 377-559 (606)
42 3t6q_A CD180 antigen; protein- 99.9 3.1E-21 1.1E-25 156.2 15.6 161 43-203 346-511 (606)
43 3rfs_A Internalin B, repeat mo 99.9 9.1E-22 3.1E-26 144.5 11.4 161 19-182 59-219 (272)
44 2o6s_A Variable lymphocyte rec 99.9 1.3E-21 4.5E-26 138.2 11.7 179 7-193 3-190 (208)
45 2ft3_A Biglycan; proteoglycan, 99.9 3.9E-21 1.3E-25 145.0 14.6 184 20-205 75-307 (332)
46 2z63_A TOLL-like receptor 4, v 99.9 2.2E-21 7.5E-26 155.9 12.6 183 21-205 345-531 (570)
47 1wwl_A Monocyte differentiatio 99.9 5.5E-22 1.9E-26 148.4 8.5 178 23-205 95-309 (312)
48 1wwl_A Monocyte differentiatio 99.9 5.7E-22 1.9E-26 148.4 8.5 180 24-205 64-266 (312)
49 3oja_B Anopheles plasmodium-re 99.9 7.5E-21 2.6E-25 153.8 15.1 181 22-204 74-313 (597)
50 3j0a_A TOLL-like receptor 5; m 99.9 5.5E-21 1.9E-25 160.0 14.1 192 11-204 14-216 (844)
51 1ziw_A TOLL-like receptor 3; i 99.9 3E-20 1E-24 152.3 16.9 180 24-204 382-596 (680)
52 1ziw_A TOLL-like receptor 3; i 99.8 1.1E-20 3.7E-25 154.9 12.9 180 22-202 24-205 (680)
53 2xwt_C Thyrotropin receptor; s 99.8 2.5E-20 8.6E-25 134.3 13.2 177 20-203 52-237 (239)
54 1h6u_A Internalin H; cell adhe 99.8 1.7E-20 5.8E-25 140.1 12.5 169 21-204 61-229 (308)
55 3o53_A Protein LRIM1, AGAP0063 99.8 4.5E-21 1.5E-25 143.8 9.4 176 24-205 35-250 (317)
56 4eco_A Uncharacterized protein 99.8 3.4E-21 1.1E-25 156.8 9.4 179 21-204 204-414 (636)
57 4glp_A Monocyte differentiatio 99.8 2.3E-21 7.8E-26 144.9 7.8 177 24-205 92-307 (310)
58 2z7x_B TOLL-like receptor 1, v 99.8 1.5E-20 5.1E-25 149.7 12.8 159 44-205 321-481 (520)
59 2z63_A TOLL-like receptor 4, v 99.8 1.7E-20 5.8E-25 150.8 12.9 179 22-202 27-210 (570)
60 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 3E-20 1E-24 149.3 13.9 159 44-205 350-510 (562)
61 3e6j_A Variable lymphocyte rec 99.8 8.8E-20 3E-24 130.7 14.6 154 2-157 10-172 (229)
62 3oja_A Leucine-rich immune mol 99.8 2.1E-20 7.2E-25 147.7 12.1 176 23-204 34-249 (487)
63 2z62_A TOLL-like receptor 4, v 99.8 1E-19 3.5E-24 133.8 14.7 172 29-204 13-189 (276)
64 2xot_A Amphoterin-induced prot 99.8 3.1E-20 1.1E-24 141.6 12.2 174 27-204 22-201 (361)
65 2v9t_B SLIT homolog 2 protein 99.8 1.7E-19 5.8E-24 128.4 14.9 150 28-181 16-165 (220)
66 4glp_A Monocyte differentiatio 99.8 1.1E-20 3.7E-25 141.3 8.4 155 21-182 143-308 (310)
67 1h6u_A Internalin H; cell adhe 99.8 1E-19 3.4E-24 135.9 13.4 170 21-205 39-208 (308)
68 4fmz_A Internalin; leucine ric 99.8 4.4E-20 1.5E-24 139.9 11.6 169 24-205 178-346 (347)
69 4ecn_A Leucine-rich repeat pro 99.8 2.6E-20 8.9E-25 155.3 10.6 179 20-204 445-656 (876)
70 3j0a_A TOLL-like receptor 5; m 99.8 1.9E-19 6.4E-24 150.8 15.7 87 21-107 71-160 (844)
71 2z81_A CD282 antigen, TOLL-lik 99.8 4.2E-19 1.4E-23 142.2 16.4 181 9-204 2-184 (549)
72 2v9t_B SLIT homolog 2 protein 99.8 2.3E-19 8E-24 127.7 13.4 151 50-204 14-164 (220)
73 1h6t_A Internalin B; cell adhe 99.8 1.2E-19 3.9E-24 134.6 11.8 169 21-204 44-212 (291)
74 3e6j_A Variable lymphocyte rec 99.8 5.1E-19 1.7E-23 126.7 14.5 152 27-183 23-174 (229)
75 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 4E-19 1.4E-23 142.8 15.5 106 23-132 52-158 (562)
76 4g8a_A TOLL-like receptor 4; l 99.8 1.5E-19 5.2E-24 146.6 12.5 158 23-181 52-214 (635)
77 2o6s_A Variable lymphocyte rec 99.8 3.8E-19 1.3E-23 125.5 12.6 167 27-204 11-177 (208)
78 2z7x_B TOLL-like receptor 1, v 99.8 6.8E-19 2.3E-23 140.1 15.5 85 21-108 43-128 (520)
79 4g8a_A TOLL-like receptor 4; l 99.8 7.1E-19 2.4E-23 142.7 15.5 167 34-204 42-213 (635)
80 4fmz_A Internalin; leucine ric 99.8 4.1E-19 1.4E-23 134.6 13.0 152 43-205 173-324 (347)
81 2v70_A SLIT-2, SLIT homolog 2 99.8 3.7E-19 1.3E-23 126.7 11.9 152 27-182 15-167 (220)
82 4ezg_A Putative uncharacterize 99.8 4.6E-19 1.6E-23 124.1 10.7 153 44-205 41-194 (197)
83 2v70_A SLIT-2, SLIT homolog 2 99.8 2.3E-18 8E-23 122.5 14.4 152 6-158 6-167 (220)
84 2ast_B S-phase kinase-associat 99.8 4.5E-21 1.5E-25 144.7 -1.2 178 24-202 71-257 (336)
85 2xot_A Amphoterin-induced prot 99.8 6.6E-19 2.3E-23 134.2 10.4 174 7-181 14-202 (361)
86 1m9s_A Internalin B; cell inva 99.8 8.1E-19 2.8E-23 141.6 11.2 170 20-204 40-209 (605)
87 4ay9_X Follicle-stimulating ho 99.8 4.8E-18 1.6E-22 129.0 14.5 195 9-205 7-215 (350)
88 1o6v_A Internalin A; bacterial 99.8 3.3E-18 1.1E-22 134.6 13.5 37 165-203 350-386 (466)
89 2ast_B S-phase kinase-associat 99.8 1.3E-20 4.4E-25 142.2 -0.5 182 21-202 91-282 (336)
90 1o6v_A Internalin A; bacterial 99.8 2.9E-18 1E-22 134.9 12.6 172 19-205 195-366 (466)
91 4ezg_A Putative uncharacterize 99.8 4.1E-18 1.4E-22 119.3 11.2 153 21-182 42-195 (197)
92 3o53_A Protein LRIM1, AGAP0063 99.8 6.9E-19 2.4E-23 131.9 5.6 176 24-204 11-203 (317)
93 1xeu_A Internalin C; cellular 99.7 3E-18 1E-22 125.2 7.6 145 23-181 41-185 (263)
94 2ca6_A RAN GTPase-activating p 99.7 3.5E-20 1.2E-24 142.4 -3.9 134 71-204 159-315 (386)
95 3oja_A Leucine-rich immune mol 99.7 5.8E-18 2E-22 133.8 8.6 157 43-204 30-203 (487)
96 3bz5_A Internalin-J, INLJ; leu 99.7 8.8E-17 3E-21 126.1 14.7 165 22-204 41-224 (457)
97 1w8a_A SLIT protein; signaling 99.7 5.4E-17 1.8E-21 113.1 12.0 128 50-181 11-139 (192)
98 3bz5_A Internalin-J, INLJ; leu 99.7 1.6E-16 5.3E-21 124.7 15.5 164 21-205 62-246 (457)
99 3cvr_A Invasion plasmid antige 99.7 1.2E-16 4E-21 128.0 15.0 177 4-205 36-243 (571)
100 3goz_A Leucine-rich repeat-con 99.7 4E-19 1.4E-23 135.5 0.7 182 23-204 22-237 (362)
101 3cvr_A Invasion plasmid antige 99.7 3.6E-17 1.2E-21 131.0 11.6 134 48-205 60-193 (571)
102 1h6t_A Internalin B; cell adhe 99.7 6E-17 2.1E-21 119.9 11.6 149 44-205 43-191 (291)
103 2ca6_A RAN GTPase-activating p 99.7 3.6E-19 1.2E-23 136.9 -0.7 110 95-204 159-286 (386)
104 1m9s_A Internalin B; cell inva 99.7 7.6E-17 2.6E-21 130.2 11.9 154 19-185 61-214 (605)
105 2ell_A Acidic leucine-rich nuc 99.7 6.6E-17 2.3E-21 110.2 8.9 132 47-181 24-160 (168)
106 3goz_A Leucine-rich repeat-con 99.7 8.7E-19 3E-23 133.6 -0.7 178 28-205 3-209 (362)
107 2wfh_A SLIT homolog 2 protein 99.7 5.7E-16 1.9E-20 108.0 12.4 127 50-181 13-139 (193)
108 2o6r_A Variable lymphocyte rec 99.7 1.3E-15 4.5E-20 104.6 12.6 131 49-183 9-139 (177)
109 1xeu_A Internalin C; cellular 99.7 4.2E-16 1.4E-20 113.8 10.7 165 24-204 20-184 (263)
110 2ell_A Acidic leucine-rich nuc 99.7 2.4E-16 8.3E-21 107.4 8.2 134 21-157 22-160 (168)
111 1z7x_W Ribonuclease inhibitor; 99.7 6.9E-19 2.4E-23 138.0 -5.4 182 24-205 200-411 (461)
112 2je0_A Acidic leucine-rich nuc 99.7 1.4E-16 4.7E-21 106.5 6.3 128 71-201 17-149 (149)
113 3g06_A SSPH2 (leucine-rich rep 99.7 5.8E-16 2E-20 125.3 10.8 158 4-182 15-195 (622)
114 3sb4_A Hypothetical leucine ri 99.7 1.3E-15 4.6E-20 114.6 12.0 103 94-199 225-328 (329)
115 3g06_A SSPH2 (leucine-rich rep 99.6 7E-15 2.4E-19 119.0 16.2 77 120-205 221-297 (622)
116 1w8a_A SLIT protein; signaling 99.6 2E-15 6.9E-20 105.1 11.0 130 26-159 11-141 (192)
117 1z7x_W Ribonuclease inhibitor; 99.6 4.4E-18 1.5E-22 133.5 -4.0 181 24-204 86-296 (461)
118 1jl5_A Outer protein YOPM; leu 99.6 1.2E-14 4E-19 114.0 15.2 139 24-181 132-270 (454)
119 2je0_A Acidic leucine-rich nuc 99.6 3.2E-16 1.1E-20 104.7 5.2 108 23-133 17-126 (149)
120 1jl5_A Outer protein YOPM; leu 99.6 1.3E-14 4.4E-19 113.7 15.1 159 23-204 91-249 (454)
121 4b8c_D Glucose-repressible alc 99.6 7.4E-17 2.5E-21 133.0 2.1 159 23-188 173-336 (727)
122 2wfh_A SLIT homolog 2 protein 99.6 1.2E-14 4.2E-19 101.2 12.9 126 27-157 14-139 (193)
123 4ay9_X Follicle-stimulating ho 99.6 4.9E-15 1.7E-19 112.4 11.0 173 20-194 51-228 (350)
124 2o6r_A Variable lymphocyte rec 99.6 1.1E-14 3.9E-19 99.9 11.6 129 27-159 11-139 (177)
125 1a9n_A U2A', U2A'; complex (nu 99.6 2.5E-15 8.5E-20 103.2 7.9 131 44-181 16-153 (176)
126 1dce_A Protein (RAB geranylger 99.6 8.4E-19 2.9E-23 140.7 -12.6 102 97-204 443-545 (567)
127 4b8c_D Glucose-repressible alc 99.6 9.2E-15 3.1E-19 120.6 8.5 152 47-205 173-329 (727)
128 3g39_A Variable lymphocyte rec 99.6 3.6E-14 1.2E-18 96.8 10.1 105 73-181 11-115 (170)
129 1a9n_A U2A', U2A'; complex (nu 99.5 4.8E-15 1.6E-19 101.8 5.2 131 67-203 15-151 (176)
130 2r9u_A Variable lymphocyte rec 99.5 8.5E-14 2.9E-18 95.3 10.2 104 74-181 15-118 (174)
131 3sb4_A Hypothetical leucine ri 99.5 1.6E-13 5.5E-18 103.2 11.7 181 22-205 48-310 (329)
132 1ds9_A Outer arm dynein; leuci 99.5 9.9E-17 3.4E-21 112.3 -6.2 127 66-198 43-180 (198)
133 1dce_A Protein (RAB geranylger 99.4 3.9E-13 1.3E-17 107.9 10.1 122 72-199 442-567 (567)
134 1ds9_A Outer arm dynein; leuci 99.4 1.8E-16 6.2E-21 110.9 -8.3 150 24-181 19-185 (198)
135 3g39_A Variable lymphocyte rec 99.4 2.2E-12 7.6E-17 87.9 10.1 107 48-158 10-116 (170)
136 3un9_A NLR family member X1; l 99.4 4.3E-15 1.5E-19 113.5 -4.3 157 48-204 73-251 (372)
137 4fdw_A Leucine rich hypothetic 99.4 9.5E-12 3.2E-16 95.9 13.3 172 24-203 158-356 (401)
138 2r9u_A Variable lymphocyte rec 99.4 4.4E-12 1.5E-16 86.8 10.0 105 49-157 14-118 (174)
139 4fdw_A Leucine rich hypothetic 99.3 4.6E-11 1.6E-15 92.1 13.8 172 24-202 136-333 (401)
140 3un9_A NLR family member X1; l 99.3 6.5E-15 2.2E-19 112.5 -8.3 181 23-203 72-281 (372)
141 3ogk_B Coronatine-insensitive 99.3 3.3E-13 1.1E-17 108.9 0.3 83 25-107 140-232 (592)
142 2ifg_A High affinity nerve gro 99.3 1.5E-11 5.1E-16 93.1 8.8 103 75-181 12-116 (347)
143 2p1m_B Transport inhibitor res 99.3 3.2E-13 1.1E-17 109.0 -1.3 108 23-130 105-221 (594)
144 3ogk_B Coronatine-insensitive 99.2 9.6E-13 3.3E-17 106.2 0.7 81 21-102 162-250 (592)
145 2p1m_B Transport inhibitor res 99.2 6.8E-14 2.3E-18 112.9 -6.7 181 22-204 288-518 (594)
146 2ifg_A High affinity nerve gro 99.2 1.8E-10 6.2E-15 87.1 10.0 101 29-133 14-116 (347)
147 2ra8_A Uncharacterized protein 99.0 3.7E-10 1.3E-14 85.8 5.7 160 43-205 135-320 (362)
148 2ra8_A Uncharacterized protein 98.8 5.7E-10 1.9E-14 84.7 1.2 176 22-202 138-340 (362)
149 3e4g_A ATP synthase subunit S, 98.7 3.2E-09 1.1E-13 72.0 1.9 87 95-182 61-154 (176)
150 1io0_A Tropomodulin; LRR prote 98.6 3.8E-09 1.3E-13 72.8 -0.1 117 65-181 30-164 (185)
151 4fs7_A Uncharacterized protein 98.6 2E-06 6.7E-11 66.1 14.3 145 43-197 249-393 (394)
152 4fs7_A Uncharacterized protein 98.6 7.2E-07 2.5E-11 68.5 11.3 132 63-202 245-376 (394)
153 4h09_A Hypothetical leucine ri 98.5 4.3E-06 1.5E-10 63.8 13.5 147 41-193 211-357 (379)
154 4gt6_A Cell surface protein; l 98.5 7E-06 2.4E-10 63.0 14.7 106 93-203 263-368 (394)
155 3e4g_A ATP synthase subunit S, 98.5 7E-08 2.4E-12 65.4 2.7 82 72-154 62-149 (176)
156 1io0_A Tropomodulin; LRR prote 98.4 1.4E-08 4.7E-13 70.0 -1.5 114 90-204 31-163 (185)
157 4gt6_A Cell surface protein; l 98.4 4.3E-06 1.5E-10 64.2 12.0 135 62-204 256-390 (394)
158 4h09_A Hypothetical leucine ri 98.4 7.1E-06 2.4E-10 62.6 12.7 130 67-201 213-342 (379)
159 3rw6_A Nuclear RNA export fact 98.2 6.5E-07 2.2E-11 64.9 3.4 79 118-198 168-257 (267)
160 3rw6_A Nuclear RNA export fact 97.9 7.5E-06 2.6E-10 59.4 3.9 63 141-205 167-233 (267)
161 1pgv_A TMD-1, tropomodulin TMD 97.3 1.7E-05 5.8E-10 54.7 -1.5 86 68-153 38-135 (197)
162 3rfe_A Platelet glycoprotein I 97.2 0.00053 1.8E-08 44.0 5.0 56 124-181 12-68 (130)
163 1pgv_A TMD-1, tropomodulin TMD 97.0 0.00017 5.7E-09 49.8 0.9 112 91-203 37-168 (197)
164 3rfe_A Platelet glycoprotein I 96.1 0.01 3.6E-07 37.9 5.1 36 96-132 32-67 (130)
165 2lz0_A Uncharacterized protein 84.5 4.4 0.00015 24.2 6.1 50 32-82 5-54 (100)
166 2lz0_A Uncharacterized protein 81.5 4.2 0.00014 24.3 5.2 44 110-154 10-53 (100)
No 1
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.97 E-value=2.2e-29 Score=188.67 Aligned_cols=201 Identities=36% Similarity=0.589 Sum_probs=168.1
Q ss_pred CCCCCCCCCCc--cceeeecCCC--ceEEEEEecCCcccc--cCCCCCCCCCCCcEEEeec-CcceeecCccccCCCCcc
Q 037027 2 KNWNTSSPVCN--WTGVTCDVHS--HRVTVFNVSGLNLTG--TIPSQLGNLSSLQSLNLSF-NRLSGSIPSATFITHTLK 74 (205)
Q Consensus 2 ~~~~~~~~~c~--~~~~~~~~~~--~~l~~l~l~~~~~~~--~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~l~~L~ 74 (205)
..|..+.++|. |.|+.|.... .+++.|+++++.+.+ .+|..|+++++|+.|++++ +.+....+..+..+++|+
T Consensus 25 ~~W~~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~ 104 (313)
T 1ogq_A 25 SSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLH 104 (313)
T ss_dssp TTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCS
T ss_pred cCCCCCCCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCC
Confidence 36988889999 9999997654 689999999999988 7899999999999999995 888877888899999999
Q ss_pred EEEecCcccccCCCccccCCCCccEEEcccccCCcccCcccccCCCCcceeeecccccccCCCCCcCCCC-cceEEEeec
Q 037027 75 YVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCT-YLQILGLSF 153 (205)
Q Consensus 75 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~-~L~~l~l~~ 153 (205)
+|++.+|.+....|..+..+++|++|++++|.+.+.++..+ ..+++|++|++++|.+++..|..+..++ +|+.|++++
T Consensus 105 ~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~-~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~ 183 (313)
T 1ogq_A 105 YLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSI-SSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISR 183 (313)
T ss_dssp EEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGG-GGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCS
T ss_pred EEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHH-hcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcC
Confidence 99999999887788888889999999999998876666655 7788899999999988877787888877 888888888
Q ss_pred ceeecccCccccccCCceEEEeecccccccCchhccCCCCCcEEeccCCcC
Q 037027 154 NDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFDNEL 204 (205)
Q Consensus 154 ~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~L~~l~l~~n~l 204 (205)
|.+.+..|..+..++ |++|++++|.+.+..+..+..+++|+.|++++|.+
T Consensus 184 N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l 233 (313)
T 1ogq_A 184 NRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSL 233 (313)
T ss_dssp SEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEE
T ss_pred CeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCce
Confidence 888777777776665 78888888877766777777777777777777754
No 2
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.94 E-value=6.7e-26 Score=166.42 Aligned_cols=181 Identities=22% Similarity=0.234 Sum_probs=153.0
Q ss_pred ceEEEEEecCCcccccCCCCCCCCCCCcEEEeecCcceeecCccccCCCCccEEEecCcccccCCCccccCCCCccEEEc
Q 037027 23 HRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDL 102 (205)
Q Consensus 23 ~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 102 (205)
+.++.|+++++.+....+..|+++++|+.|++++|.+....+..|..+++|++|++.+|.+....+..+..+++|++|++
T Consensus 37 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 116 (270)
T 2o6q_A 37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRL 116 (270)
T ss_dssp TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEEC
T ss_pred CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEEC
Confidence 35788899998888666677889999999999999888666666788999999999999988666667778899999999
Q ss_pred ccccCCcccCcccccCCCCcceeeecccccccCCCCCcCCCCcceEEEeecceeecccCccccccCCceEEEeecccccc
Q 037027 103 SYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQG 182 (205)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~ 182 (205)
++|.+. .++...+..+++|++|++++|.++...+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+++
T Consensus 117 ~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 195 (270)
T 2o6q_A 117 DRNQLK-SLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKR 195 (270)
T ss_dssp CSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCCccC-eeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCc
Confidence 999987 5665555788999999999999986655668889999999999999887766778888999999999999987
Q ss_pred cCchhccCCCCCcEEeccCCcC
Q 037027 183 EIPRELSNLAELELMSLFDNEL 204 (205)
Q Consensus 183 ~~~~~l~~~~~L~~l~l~~n~l 204 (205)
..+..+..+++|+.|++++|++
T Consensus 196 ~~~~~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 196 VPEGAFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp CCTTTTTTCTTCCEEECCSSCB
T ss_pred CCHHHhccccCCCEEEecCCCe
Confidence 6667788999999999999986
No 3
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.93 E-value=9.3e-25 Score=161.47 Aligned_cols=182 Identities=22% Similarity=0.232 Sum_probs=108.0
Q ss_pred CceEEEEEecCCcccccCCCCCCCCCCCcEEEeecCcceeecCccccCCCCccEEEecCcc-cccCCCccccCCCCccEE
Q 037027 22 SHRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQ-LSGAFPSFIFNKSSLQDL 100 (205)
Q Consensus 22 ~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~l~~l~~L~~L 100 (205)
.++++.|+++++.+....+..|+.+++|+.|++++|.+....+..+..+++|++|++++|. +....+..+..+++|++|
T Consensus 31 ~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L 110 (285)
T 1ozn_A 31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL 110 (285)
T ss_dssp CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEE
Confidence 3467777777777776566667777777777777777765556666677777777777775 554445556666666666
Q ss_pred EcccccCCcccCcccccCCCCcceeeecccccccCCCCCcCCCCcceEEEeecceeecccCccccccCCceEEEeecccc
Q 037027 101 DLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRL 180 (205)
Q Consensus 101 ~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l 180 (205)
++++|.+. .+....+..+++|+.|++++|.++...+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+
T Consensus 111 ~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 189 (285)
T 1ozn_A 111 HLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRV 189 (285)
T ss_dssp ECTTSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred ECCCCcCC-EECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcc
Confidence 66666665 33333335555666666666655544344455555566666665555544444444555555555555555
Q ss_pred cccCchhccCCCCCcEEeccCCcC
Q 037027 181 QGEIPRELSNLAELELMSLFDNEL 204 (205)
Q Consensus 181 ~~~~~~~l~~~~~L~~l~l~~n~l 204 (205)
++..+..+..+++|+.|++++|.+
T Consensus 190 ~~~~~~~~~~l~~L~~L~l~~n~l 213 (285)
T 1ozn_A 190 AHVHPHAFRDLGRLMTLYLFANNL 213 (285)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCC
T ss_pred cccCHhHccCcccccEeeCCCCcC
Confidence 544445555555555555555543
No 4
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.93 E-value=6.3e-25 Score=162.40 Aligned_cols=184 Identities=24% Similarity=0.229 Sum_probs=165.6
Q ss_pred CCCceEEEEEecCCcccccCCCCCCCCCCCcEEEeecCc-ceeecCccccCCCCccEEEecCcccccCCCccccCCCCcc
Q 037027 20 VHSHRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNR-LSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQ 98 (205)
Q Consensus 20 ~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 98 (205)
...++++.|+++++.+.+..+..|+++++|+.|++++|. +....+..+..+++|++|++.+|.+....+..+..+++|+
T Consensus 53 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 132 (285)
T 1ozn_A 53 RACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQ 132 (285)
T ss_dssp TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred ccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCC
Confidence 355789999999999988788899999999999999997 7766678899999999999999999877788888899999
Q ss_pred EEEcccccCCcccCcccccCCCCcceeeecccccccCCCCCcCCCCcceEEEeecceeecccCccccccCCceEEEeecc
Q 037027 99 DLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRN 178 (205)
Q Consensus 99 ~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~ 178 (205)
+|++++|.+. .++...+..+++|+.|++++|.++...+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|
T Consensus 133 ~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 211 (285)
T 1ozn_A 133 YLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN 211 (285)
T ss_dssp EEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EEECCCCccc-ccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCC
Confidence 9999999997 666655588999999999999998766667899999999999999998888889999999999999999
Q ss_pred cccccCchhccCCCCCcEEeccCCcC
Q 037027 179 RLQGEIPRELSNLAELELMSLFDNEL 204 (205)
Q Consensus 179 ~l~~~~~~~l~~~~~L~~l~l~~n~l 204 (205)
.+++..+..+..+++|+.|++++|++
T Consensus 212 ~l~~~~~~~~~~l~~L~~L~l~~N~~ 237 (285)
T 1ozn_A 212 NLSALPTEALAPLRALQYLRLNDNPW 237 (285)
T ss_dssp CCSCCCHHHHTTCTTCCEEECCSSCE
T ss_pred cCCcCCHHHcccCcccCEEeccCCCc
Confidence 99977778899999999999999986
No 5
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.93 E-value=1.9e-25 Score=168.27 Aligned_cols=193 Identities=21% Similarity=0.257 Sum_probs=125.3
Q ss_pred CCCCCCCccceeeec--------CCCceEEEEEecCCcccccCCCCCCCCCCCcEEEeecCcceeecCccccCCCCccEE
Q 037027 5 NTSSPVCNWTGVTCD--------VHSHRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYV 76 (205)
Q Consensus 5 ~~~~~~c~~~~~~~~--------~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 76 (205)
......|.|.|..|. ....+++.|+++++.+. .+|..+.++++|+.|++++|.+. .++..+..+++|++|
T Consensus 55 ~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L 132 (328)
T 4fcg_A 55 SNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETL 132 (328)
T ss_dssp TTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEE
T ss_pred cccccccccCCcchhhhHHHHhcccccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEE
Confidence 457788999998883 23457888888888887 66766777888888888888887 667777788888888
Q ss_pred EecCcccccCCCccccCCCCccEEEcccccCCcccCccc--------ccCCCCcceeeecccccccCCCCCcCCCCcceE
Q 037027 77 DLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANI--------CSNLPFLEYISLSQNMFHGGIPSALSKCTYLQI 148 (205)
Q Consensus 77 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~--------~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~ 148 (205)
++++|.+. ..|..+..+++|++|++++|...+.++..+ +..+++|+.|++++|.++ .+|..+..+++|+.
T Consensus 133 ~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~ 210 (328)
T 4fcg_A 133 TLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKS 210 (328)
T ss_dssp EEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCE
T ss_pred ECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCE
Confidence 88888877 667777777777777777765554555433 123556666666666655 44555555556666
Q ss_pred EEeecceeecccCccccccCCceEEEeecccccccCchhccCCCCCcEEeccCC
Q 037027 149 LGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFDN 202 (205)
Q Consensus 149 l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~L~~l~l~~n 202 (205)
|++++|.+.+ .+..+..+++|++|++++|.+.+.+|..+..+++|+.|++++|
T Consensus 211 L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n 263 (328)
T 4fcg_A 211 LKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDC 263 (328)
T ss_dssp EEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTC
T ss_pred EEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCC
Confidence 6666655542 3334445555555555555544444444555555555555544
No 6
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.93 E-value=3.3e-26 Score=186.23 Aligned_cols=197 Identities=25% Similarity=0.433 Sum_probs=135.9
Q ss_pred CCCCCCCCCcc---ceeeecCCCceEEEEEecCCcccccCCCCCCCCCCCcEEEeecCcc--------------------
Q 037027 3 NWNTSSPVCNW---TGVTCDVHSHRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRL-------------------- 59 (205)
Q Consensus 3 ~~~~~~~~c~~---~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-------------------- 59 (205)
+|..+.++|.| .|+.|... .+|+.|+++++++.+.+|+.++++++|+.|++++|.+
T Consensus 59 ~W~~~~~~c~w~~~~GV~C~~~-~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~ 137 (636)
T 4eco_A 59 NWNFNKELDMWGAQPGVSLNSN-GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ 137 (636)
T ss_dssp CCCCSSCGGGTTCCTTEEECTT-CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH
T ss_pred CCCCCCCcccccCCCCeEEcCC-CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHH
Confidence 69999999999 99999766 4899999999999999999999999999999988743
Q ss_pred ----------------------------------------------------------eeecCccccCCCCccEEEecCc
Q 037027 60 ----------------------------------------------------------SGSIPSATFITHTLKYVDLRGN 81 (205)
Q Consensus 60 ----------------------------------------------------------~~~~~~~~~~l~~L~~L~l~~~ 81 (205)
.. +|..+..+++|++|++++|
T Consensus 138 ~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n 216 (636)
T 4eco_A 138 KQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNS 216 (636)
T ss_dssp HHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESC
T ss_pred HHHHHhhHHHhhhccCchhhHHHHHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCC
Confidence 22 5566777888888888888
Q ss_pred ccccC-----------------CCcccc--CCCCccEEEcccccCCcccCcccccCCCCcceeeecccc-ccc-CCCC--
Q 037027 82 QLSGA-----------------FPSFIF--NKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNM-FHG-GIPS-- 138 (205)
Q Consensus 82 ~~~~~-----------------~~~~l~--~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~-~~~-~~~~-- 138 (205)
.++.. .|..+. .+.+|++|++++|.+.+.++..+ ..+++|++|++++|. +++ .+|.
T Consensus 217 ~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~Ls~n~~l~~~~lp~~~ 295 (636)
T 4eco_A 217 PFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFL-KALPEMQLINVACNRGISGEQLKDDW 295 (636)
T ss_dssp CCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTT-TTCSSCCEEECTTCTTSCHHHHHHHH
T ss_pred ccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHH-hcCCCCCEEECcCCCCCccccchHHH
Confidence 87753 777777 78888888888887766666554 566677777777665 543 2333
Q ss_pred -----------------------------CcCCCCcceEEEeecceeecccCccccccCCceEEEeecccccccCchhcc
Q 037027 139 -----------------------------ALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELS 189 (205)
Q Consensus 139 -----------------------------~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~l~ 189 (205)
.+..+++|+.|++++|.+.+.+| .+..+++|++|++++|.++ .+|..+.
T Consensus 296 ~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~ 373 (636)
T 4eco_A 296 QALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFC 373 (636)
T ss_dssp HHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSE
T ss_pred HhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhh
Confidence 34444445555555554443444 4444455555555555554 4444455
Q ss_pred CCCC-CcEEeccCCcC
Q 037027 190 NLAE-LELMSLFDNEL 204 (205)
Q Consensus 190 ~~~~-L~~l~l~~n~l 204 (205)
.+++ |++|++++|.+
T Consensus 374 ~l~~~L~~L~Ls~N~l 389 (636)
T 4eco_A 374 GFTEQVENLSFAHNKL 389 (636)
T ss_dssp EECTTCCEEECCSSCC
T ss_pred hhcccCcEEEccCCcC
Confidence 5555 55555555544
No 7
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.93 E-value=1.1e-24 Score=158.25 Aligned_cols=189 Identities=23% Similarity=0.309 Sum_probs=160.2
Q ss_pred CCccceeeecCCCceEEEEEecCCcccccCCCCCCCCCCCcEEEeecCcceeecCccccCCCCccEEEecCcccccCCCc
Q 037027 10 VCNWTGVTCDVHSHRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPS 89 (205)
Q Consensus 10 ~c~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 89 (205)
++.|.|..|.. ..+.++++++.+. .+|..+. +.++.|++++|.+....+..+..+++|++|++++|.+....+.
T Consensus 4 Cp~~~gC~C~~---~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 77 (251)
T 3m19_A 4 CETVTGCTCNE---GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAG 77 (251)
T ss_dssp CHHHHSSEEEG---GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTT
T ss_pred CCCCCceEcCC---CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHh
Confidence 55677777742 3446788888877 5565553 5899999999999877777899999999999999999877777
Q ss_pred cccCCCCccEEEcccccCCcccCcccccCCCCcceeeecccccccCCCCCcCCCCcceEEEeecceeecccCccccccCC
Q 037027 90 FIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTK 169 (205)
Q Consensus 90 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~ 169 (205)
.+..+++|++|++++|.+. .++...+..+++|++|++++|.++...+..+..+++|+.|++++|.+.+..+..+..+++
T Consensus 78 ~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 156 (251)
T 3m19_A 78 VFDDLTELGTLGLANNQLA-SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTN 156 (251)
T ss_dssp TTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred HhccCCcCCEEECCCCccc-ccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcC
Confidence 7888999999999999998 666666688999999999999998666667888999999999999998776767888999
Q ss_pred ceEEEeecccccccCchhccCCCCCcEEeccCCcCC
Q 037027 170 LKELYLVRNRLQGEIPRELSNLAELELMSLFDNELQ 205 (205)
Q Consensus 170 L~~l~l~~~~l~~~~~~~l~~~~~L~~l~l~~n~l~ 205 (205)
|++|++++|.+++..+..+..+++|+.|++++|+++
T Consensus 157 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 157 LQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFD 192 (251)
T ss_dssp CCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred CCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCcee
Confidence 999999999999777788999999999999999874
No 8
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.92 E-value=1.3e-24 Score=180.32 Aligned_cols=198 Identities=30% Similarity=0.475 Sum_probs=151.6
Q ss_pred CCCCCCCCCCccceeeecCCCceEEEEEecCCccccc---C-----------------------CCCCCCCCCCcEEEee
Q 037027 2 KNWNTSSPVCNWTGVTCDVHSHRVTVFNVSGLNLTGT---I-----------------------PSQLGNLSSLQSLNLS 55 (205)
Q Consensus 2 ~~~~~~~~~c~~~~~~~~~~~~~l~~l~l~~~~~~~~---~-----------------------~~~~~~~~~L~~L~l~ 55 (205)
..|..+.++|.|.|+.|. ..+|+.++++++.+.+. + |+.|+++++|+.|+++
T Consensus 31 ~~W~~~~~~C~w~gv~C~--~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls 108 (768)
T 3rgz_A 31 PDWSSNKNPCTFDGVTCR--DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLS 108 (768)
T ss_dssp TTCCTTSCGGGSTTEEEE--TTEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEECTTSCEEECCCCCCCCTTCCEEECC
T ss_pred cCCCCCCCCcCCcceEEC--CCcEEEEECCCCCcCCccCccChhHhccCcccccCCcCCCcCCCchhhccCCCCCEEECC
Confidence 359988999999999998 45899999999877654 2 2567788888899998
Q ss_pred cCcceeecCc--cccCCCCccEEEecCcccccCCCccc-cCCCCccEEEcccccCCcccCccc--ccCCCCcceeeeccc
Q 037027 56 FNRLSGSIPS--ATFITHTLKYVDLRGNQLSGAFPSFI-FNKSSLQDLDLSYNALSGEIPANI--CSNLPFLEYISLSQN 130 (205)
Q Consensus 56 ~~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~~~~--~~~~~~L~~l~l~~~ 130 (205)
+|.+.+..+. .+..+++|++|++++|.+....+..+ ..+++|++|++++|.+.+..+... +..+++|+.+++++|
T Consensus 109 ~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n 188 (768)
T 3rgz_A 109 RNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGN 188 (768)
T ss_dssp SSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSS
T ss_pred CCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCC
Confidence 8888766666 78888889999998888876555554 677888888888888864433331 366777888888888
Q ss_pred ccccCCCCCcCCCCcceEEEeecceeecccCccccccCCceEEEeecccccccCchhccCCCCCcEEeccCCcC
Q 037027 131 MFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFDNEL 204 (205)
Q Consensus 131 ~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~L~~l~l~~n~l 204 (205)
.+.+..+ +..+++|++|++++|.+.+..|. +..+++|++|++++|.+++.++..+..+++|++|++++|.+
T Consensus 189 ~l~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l 259 (768)
T 3rgz_A 189 KISGDVD--VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQF 259 (768)
T ss_dssp EEESCCB--CTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCC
T ss_pred cccccCC--cccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcc
Confidence 7764333 36677888888888877765555 77788888888888888777777888888888888887765
No 9
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.92 E-value=6.1e-25 Score=164.56 Aligned_cols=182 Identities=27% Similarity=0.428 Sum_probs=129.6
Q ss_pred CCceEEEEEecC-CcccccCCCCCCCCCCCcEEEeecCcceeecCccccCCCCccEEEecCcccccCCCccccCCCCccE
Q 037027 21 HSHRVTVFNVSG-LNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQD 99 (205)
Q Consensus 21 ~~~~l~~l~l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 99 (205)
..++++.|++++ +.+.+..|..|+++++|+.|++++|.+....+..+..+++|++|++++|.+....|..+..+++|++
T Consensus 74 ~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 153 (313)
T 1ogq_A 74 NLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVG 153 (313)
T ss_dssp GCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCE
T ss_pred CCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCe
Confidence 456788899985 7888788888888999999999998888777888888888999999888888777788888888888
Q ss_pred EEcccccCCcccCcccccCCC-CcceeeecccccccCCCCCc-----------------------CCCCcceEEEeecce
Q 037027 100 LDLSYNALSGEIPANICSNLP-FLEYISLSQNMFHGGIPSAL-----------------------SKCTYLQILGLSFND 155 (205)
Q Consensus 100 L~l~~~~~~~~~~~~~~~~~~-~L~~l~l~~~~~~~~~~~~~-----------------------~~~~~L~~l~l~~~~ 155 (205)
|++++|.+.+.++..+ ..++ .|+.+++++|.+++..|..+ ..+++|+.|++++|.
T Consensus 154 L~L~~N~l~~~~p~~l-~~l~~~L~~L~L~~N~l~~~~~~~~~~l~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~ 232 (313)
T 1ogq_A 154 ITFDGNRISGAIPDSY-GSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNS 232 (313)
T ss_dssp EECCSSCCEEECCGGG-GCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSE
T ss_pred EECcCCcccCcCCHHH-hhhhhcCcEEECcCCeeeccCChHHhCCcccEEECcCCcccCcCCHHHhcCCCCCEEECCCCc
Confidence 8888888865666555 4444 66777777666654444444 444445555555554
Q ss_pred eecccCccccccCCceEEEeecccccccCchhccCCCCCcEEeccCCcC
Q 037027 156 FSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFDNEL 204 (205)
Q Consensus 156 ~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~L~~l~l~~n~l 204 (205)
+.+..+. +..+++|++|++++|.+++.+|..+..+++|+.|++++|++
T Consensus 233 l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 280 (313)
T 1ogq_A 233 LAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNL 280 (313)
T ss_dssp ECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEE
T ss_pred eeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcc
Confidence 4433222 44556666666666666666677777777777777777765
No 10
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.92 E-value=4.6e-24 Score=159.26 Aligned_cols=197 Identities=23% Similarity=0.284 Sum_probs=115.4
Q ss_pred CCCCCccceeeecC---------CCceEEEEEecCCcccccCCCCCCCCCCCcEEEeecCcceee--cCccccCCCCccE
Q 037027 7 SSPVCNWTGVTCDV---------HSHRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGS--IPSATFITHTLKY 75 (205)
Q Consensus 7 ~~~~c~~~~~~~~~---------~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~ 75 (205)
....|.|.++.|.. ..++++.|+++++.+....+..|+++++|+.|++++|.+... .+..+..+++|++
T Consensus 3 ~~C~C~~~~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~ 82 (306)
T 2z66_A 3 SRCSCSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKY 82 (306)
T ss_dssp TTCEEETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCE
T ss_pred CCCeeCCCEEEcCCCCcccCCCCCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCE
Confidence 34567888888843 235799999999998855555678999999999999887632 1334445555666
Q ss_pred EEecCcccccCCCccccCCCCccEEEcccccCCc------------------------ccCcccccCCCCcceeeecccc
Q 037027 76 VDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSG------------------------EIPANICSNLPFLEYISLSQNM 131 (205)
Q Consensus 76 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~------------------------~~~~~~~~~~~~L~~l~l~~~~ 131 (205)
|++++|.+. ..+..+..+++|++|++++|.+.+ ......+..+++|+.|++++|.
T Consensus 83 L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 161 (306)
T 2z66_A 83 LDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS 161 (306)
T ss_dssp EECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCE
T ss_pred EECCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCc
Confidence 666655554 233334444455555555444431 2222222444555555555555
Q ss_pred ccc-CCCCCcCCCCcceEEEeecceeecccCccccccCCceEEEeecccccccCchhccCCCCCcEEeccCCcC
Q 037027 132 FHG-GIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFDNEL 204 (205)
Q Consensus 132 ~~~-~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~L~~l~l~~n~l 204 (205)
+.+ ..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|++
T Consensus 162 l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 235 (306)
T 2z66_A 162 FQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI 235 (306)
T ss_dssp EGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCC
T ss_pred cccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCC
Confidence 543 2444555555555555555555544455555556666666666665544444555566666666666654
No 11
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.91 E-value=2.5e-24 Score=178.57 Aligned_cols=183 Identities=37% Similarity=0.531 Sum_probs=142.8
Q ss_pred CceEEEEEecCCcccccCCCCCCCCCCCcEEEeecCcceeecCccccCCCCccEEEecCcccccCCCccccCCCCccEEE
Q 037027 22 SHRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLD 101 (205)
Q Consensus 22 ~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 101 (205)
.++++.|++++|.+.+..|..++++++|+.|++++|.+.+..+..+..+++|++|++.+|.+....|..+..+++|+.|+
T Consensus 465 l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ 544 (768)
T 3rgz_A 465 VKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLD 544 (768)
T ss_dssp CTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEE
T ss_pred CCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEE
Confidence 44667777777777766777777777777777777777766777777777777778777777767777777778888888
Q ss_pred cccccCCcccCcccc-----------------------------------------------------------------
Q 037027 102 LSYNALSGEIPANIC----------------------------------------------------------------- 116 (205)
Q Consensus 102 l~~~~~~~~~~~~~~----------------------------------------------------------------- 116 (205)
+++|.+.+.++..++
T Consensus 545 Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~ 624 (768)
T 3rgz_A 545 LNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHT 624 (768)
T ss_dssp CCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEEC
T ss_pred CCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccC
Confidence 887776655443321
Q ss_pred ----cCCCCcceeeecccccccCCCCCcCCCCcceEEEeecceeecccCccccccCCceEEEeecccccccCchhccCCC
Q 037027 117 ----SNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLA 192 (205)
Q Consensus 117 ----~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~l~~~~ 192 (205)
..++.++.+++++|.+++.+|..+..++.|+.|++++|.+.+.+|..+..+++|+.|++++|++++.+|..+..++
T Consensus 625 ~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~ 704 (768)
T 3rgz_A 625 SPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALT 704 (768)
T ss_dssp CCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCC
T ss_pred chhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCC
Confidence 2245677888888888888888888888889999999988888888888888999999999998888888888999
Q ss_pred CCcEEeccCCcC
Q 037027 193 ELELMSLFDNEL 204 (205)
Q Consensus 193 ~L~~l~l~~n~l 204 (205)
.|++|++++|++
T Consensus 705 ~L~~L~ls~N~l 716 (768)
T 3rgz_A 705 MLTEIDLSNNNL 716 (768)
T ss_dssp CCSEEECCSSEE
T ss_pred CCCEEECcCCcc
Confidence 999999998876
No 12
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.91 E-value=3.7e-24 Score=162.80 Aligned_cols=200 Identities=22% Similarity=0.230 Sum_probs=165.7
Q ss_pred CCCCCCCCccceeeecC-----------CCceEEEEEecCCcccccCCCCCCCCCCCcEEEeecCcceeecCccccCCCC
Q 037027 4 WNTSSPVCNWTGVTCDV-----------HSHRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHT 72 (205)
Q Consensus 4 ~~~~~~~c~~~~~~~~~-----------~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~ 72 (205)
|......|.|.+. |+. ..++++.|+++++.+....+..|+++++|+.|++++|.+....+..+..+++
T Consensus 23 ~~~~~~~C~~~~~-c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 101 (353)
T 2z80_A 23 SNQASLSCDRNGI-CKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGS 101 (353)
T ss_dssp ----CCEECTTSE-EECCSTTCSSCCTTCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred CCccCCCCCCCeE-eeCCCCCcccccccccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCC
Confidence 5667778888765 532 2347999999999998777778999999999999999999777788999999
Q ss_pred ccEEEecCcccccCCCccccCCCCccEEEcccccCCcccCc-ccccCCCCcceeeecccc-cccCCCCCcCCCCcceEEE
Q 037027 73 LKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPA-NICSNLPFLEYISLSQNM-FHGGIPSALSKCTYLQILG 150 (205)
Q Consensus 73 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~~~~~~~L~~l~l~~~~-~~~~~~~~~~~~~~L~~l~ 150 (205)
|++|++++|.++...+..+..+++|++|++++|.+. .++. ..+..+++|+.+++++|. +....+..+..+++|+.|+
T Consensus 102 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ 180 (353)
T 2z80_A 102 LEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELE 180 (353)
T ss_dssp CCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEE
T ss_pred CCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEE
Confidence 999999999998554555888999999999999997 6665 455889999999999994 6655667889999999999
Q ss_pred eecceeecccCccccccCCceEEEeecccccccCchhccCCCCCcEEeccCCcCC
Q 037027 151 LSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFDNELQ 205 (205)
Q Consensus 151 l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~L~~l~l~~n~l~ 205 (205)
+++|.+.+..+..+..+++|++|++++|.+.......+..+++|+.|++++|.++
T Consensus 181 l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~ 235 (353)
T 2z80_A 181 IDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLD 235 (353)
T ss_dssp EEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCT
T ss_pred CCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccc
Confidence 9999998888889999999999999999987444445567899999999999764
No 13
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.91 E-value=4.1e-24 Score=161.01 Aligned_cols=179 Identities=20% Similarity=0.295 Sum_probs=132.1
Q ss_pred CCceEEEEEecCCcccccCCCCCCCCCCCcEEEeecCcceeecCccccCCCCccEEEecCcccccCCCccccC-------
Q 037027 21 HSHRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFN------- 93 (205)
Q Consensus 21 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~------- 93 (205)
..++++.|++++|.+. .+|..++++++|+.|++++|.+. .++..+..+++|++|++.+|......|..+..
T Consensus 102 ~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~ 179 (328)
T 4fcg_A 102 RLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEH 179 (328)
T ss_dssp GGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCE
T ss_pred hCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhh
Confidence 3457888888888877 67777888888888888888887 56777778888888888887666566655443
Q ss_pred --CCCccEEEcccccCCcccCcccccCCCCcceeeecccccccCCCCCcCCCCcceEEEeecceeecccCccccccCCce
Q 037027 94 --KSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLK 171 (205)
Q Consensus 94 --l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~ 171 (205)
+++|++|++++|.+. .++..+ ..+++|+.|++++|.+++ ++..+..+++|+.|++++|.+.+..|..+..+++|+
T Consensus 180 ~~l~~L~~L~L~~n~l~-~lp~~l-~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~ 256 (328)
T 4fcg_A 180 QGLVNLQSLRLEWTGIR-SLPASI-ANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLK 256 (328)
T ss_dssp EESTTCCEEEEEEECCC-CCCGGG-GGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCC
T ss_pred ccCCCCCEEECcCCCcC-cchHhh-cCCCCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCC
Confidence 777788888877776 666554 667777777777777763 455667777777777777777666777777777777
Q ss_pred EEEeecccccccCchhccCCCCCcEEeccCCcC
Q 037027 172 ELYLVRNRLQGEIPRELSNLAELELMSLFDNEL 204 (205)
Q Consensus 172 ~l~l~~~~l~~~~~~~l~~~~~L~~l~l~~n~l 204 (205)
+|++++|.+.+.+|..+..+++|+.|++++|++
T Consensus 257 ~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~ 289 (328)
T 4fcg_A 257 RLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVN 289 (328)
T ss_dssp EEECTTCTTCCBCCTTGGGCTTCCEEECTTCTT
T ss_pred EEECCCCCchhhcchhhhcCCCCCEEeCCCCCc
Confidence 777777777667777777777777777777654
No 14
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.91 E-value=2.1e-23 Score=150.52 Aligned_cols=199 Identities=15% Similarity=0.196 Sum_probs=162.4
Q ss_pred CCCCCCCCCcc-ce--eeecC------CCceEEEEEecCCcccccCCCCCCCCCCCcEEEeecCc-ceeecCccccCCCC
Q 037027 3 NWNTSSPVCNW-TG--VTCDV------HSHRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNR-LSGSIPSATFITHT 72 (205)
Q Consensus 3 ~~~~~~~~c~~-~~--~~~~~------~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~l~~ 72 (205)
.|+.....|.. .. +.|.. ..++++.|+++++.+....+..|+++++|+.|++++|+ +....+.+|..+++
T Consensus 2 ~~cp~~C~C~~~~~~~v~c~~l~~ip~~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~ 81 (239)
T 2xwt_C 2 GCSSPPCECHQEEDFRVTCKDIQRIPSLPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSK 81 (239)
T ss_dssp -CCSSSCSEEECSTTEEEECSCSSCCCCCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTT
T ss_pred CCCCCCCeeCCCCcceeEccCccccCCCCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcC
Confidence 34555555644 33 33632 34579999999999987777789999999999999997 88667778999999
Q ss_pred ccEEEecC-cccccCCCccccCCCCccEEEcccccCCcccCcccccCCCCcc---eeeeccc-ccccCCCCCcCCCCcce
Q 037027 73 LKYVDLRG-NQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLE---YISLSQN-MFHGGIPSALSKCTYLQ 147 (205)
Q Consensus 73 L~~L~l~~-~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~---~l~l~~~-~~~~~~~~~~~~~~~L~ 147 (205)
|++|++.+ +.++...+..+..+++|++|++++|.+. .++. +..++.|+ .+++++| .++...+..+..+++|+
T Consensus 82 L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~-~lp~--~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~ 158 (239)
T 2xwt_C 82 VTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLK-MFPD--LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNET 158 (239)
T ss_dssp CCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCC-SCCC--CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSE
T ss_pred CcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCc-cccc--cccccccccccEEECCCCcchhhcCcccccchhcce
Confidence 99999998 8888666678888999999999999997 5665 46778887 9999999 88866667789999999
Q ss_pred -EEEeecceeecccCccccccCCceEEEeeccc-ccccCchhccCC-CCCcEEeccCCcCC
Q 037027 148 -ILGLSFNDFSGAIPKEIGNVTKLKELYLVRNR-LQGEIPRELSNL-AELELMSLFDNELQ 205 (205)
Q Consensus 148 -~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~-l~~~~~~~l~~~-~~L~~l~l~~n~l~ 205 (205)
.+++++|.+....+..+.. ++|+++++++|+ +++..+..|..+ ++|+.|++++|+++
T Consensus 159 ~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~ 218 (239)
T 2xwt_C 159 LTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT 218 (239)
T ss_dssp EEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCC
T ss_pred eEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccc
Confidence 9999999988444444444 899999999995 987777889999 99999999999874
No 15
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.91 E-value=1.7e-24 Score=180.28 Aligned_cols=197 Identities=21% Similarity=0.366 Sum_probs=139.8
Q ss_pred CCCCCC-----CC--Ccc------------ceeeecCCCceEEEEEecCCcccccCCCCCCCCCCCcEEEe-ecCcceee
Q 037027 3 NWNTSS-----PV--CNW------------TGVTCDVHSHRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNL-SFNRLSGS 62 (205)
Q Consensus 3 ~~~~~~-----~~--c~~------------~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l-~~~~~~~~ 62 (205)
.|+.+. ++ |.| .|+.|... .+|+.|+|+++++.+.+|+.++++++|+.|++ ++|.+...
T Consensus 285 ~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~~-~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~ 363 (876)
T 4ecn_A 285 NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNN-GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSG 363 (876)
T ss_dssp GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECTT-SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHT
T ss_pred CCCcCCCcccccCCccccccccccccccCcCceEecCC-CCEEEEECccCCCCCcCchHHhccccceEeeeccccccccc
Confidence 476654 45 999 99999874 48999999999999999999999999999999 66532111
Q ss_pred ----------------------------------------------------------------------------cCcc
Q 037027 63 ----------------------------------------------------------------------------IPSA 66 (205)
Q Consensus 63 ----------------------------------------------------------------------------~~~~ 66 (205)
+|..
T Consensus 364 ~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~ 443 (876)
T 4ecn_A 364 RLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKA 443 (876)
T ss_dssp TCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGG
T ss_pred ccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCccccccccccccchhhceeccccCcccchhHH
Confidence 5566
Q ss_pred ccCCCCccEEEecCccccc-----------------CCCcccc--CCCCccEEEcccccCCcccCcccccCCCCcceeee
Q 037027 67 TFITHTLKYVDLRGNQLSG-----------------AFPSFIF--NKSSLQDLDLSYNALSGEIPANICSNLPFLEYISL 127 (205)
Q Consensus 67 ~~~l~~L~~L~l~~~~~~~-----------------~~~~~l~--~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l 127 (205)
+..+++|++|++++|.++. ..|..+. .+++|++|++++|.+.+.++..+ ..+++|+.|++
T Consensus 444 l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l-~~L~~L~~L~L 522 (876)
T 4ecn_A 444 IQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFL-YDLPELQSLNI 522 (876)
T ss_dssp GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGG-GGCSSCCEEEC
T ss_pred HhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHH-hCCCCCCEEEC
Confidence 7788889999999998885 2677766 88889999998888776777555 67777888888
Q ss_pred cccc-ccc-CCCCCcC-------CCCcceEEEeecceeecccCc--cccccCCceEEEeecccccccCchhccCCCCCcE
Q 037027 128 SQNM-FHG-GIPSALS-------KCTYLQILGLSFNDFSGAIPK--EIGNVTKLKELYLVRNRLQGEIPRELSNLAELEL 196 (205)
Q Consensus 128 ~~~~-~~~-~~~~~~~-------~~~~L~~l~l~~~~~~~~~~~--~~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~L~~ 196 (205)
++|. +++ .+|..+. .+++|+.|++++|.+. .+|. .+..+++|++|++++|.++ .+| .+..+++|+.
T Consensus 523 s~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~ 599 (876)
T 4ecn_A 523 ACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTD 599 (876)
T ss_dssp TTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESE
T ss_pred cCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceE
Confidence 7776 554 3343222 3336666666666665 4555 5556666666666666665 444 5555666666
Q ss_pred EeccCCcC
Q 037027 197 MSLFDNEL 204 (205)
Q Consensus 197 l~l~~n~l 204 (205)
|++++|.+
T Consensus 600 L~Ls~N~l 607 (876)
T 4ecn_A 600 LKLDYNQI 607 (876)
T ss_dssp EECCSSCC
T ss_pred EECcCCcc
Confidence 66666554
No 16
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.90 E-value=6.8e-23 Score=150.56 Aligned_cols=180 Identities=24% Similarity=0.310 Sum_probs=156.3
Q ss_pred CCceEEEEEecCCcccccCCCCCCCCCCCcEEEeecCcceeecCccccCCCCccEEEecCcccccCCCccccCCCCccEE
Q 037027 21 HSHRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDL 100 (205)
Q Consensus 21 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L 100 (205)
..++++.+++.++.+.. .+.++.+++|+.|++++|.+.+ ...+..+++|++|++.+|.++...+..+..+++|++|
T Consensus 39 ~l~~L~~L~l~~~~i~~--~~~l~~l~~L~~L~l~~n~l~~--~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 114 (272)
T 3rfs_A 39 ELNSIDQIIANNSDIKS--VQGIQYLPNVRYLALGGNKLHD--ISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKEL 114 (272)
T ss_dssp HHTTCCEEECTTSCCCC--CTTGGGCTTCCEEECTTSCCCC--CGGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred cccceeeeeeCCCCccc--ccccccCCCCcEEECCCCCCCC--chhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEE
Confidence 44578899999998763 3347889999999999999884 3478899999999999999987667778889999999
Q ss_pred EcccccCCcccCcccccCCCCcceeeecccccccCCCCCcCCCCcceEEEeecceeecccCccccccCCceEEEeecccc
Q 037027 101 DLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRL 180 (205)
Q Consensus 101 ~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l 180 (205)
++++|.+. .++...+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+
T Consensus 115 ~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l 193 (272)
T 3rfs_A 115 VLVENQLQ-SLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQL 193 (272)
T ss_dssp ECTTSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred ECCCCcCC-ccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcC
Confidence 99999998 56666558899999999999999876667788999999999999999877777788899999999999999
Q ss_pred cccCchhccCCCCCcEEeccCCcCC
Q 037027 181 QGEIPRELSNLAELELMSLFDNELQ 205 (205)
Q Consensus 181 ~~~~~~~l~~~~~L~~l~l~~n~l~ 205 (205)
++..+..+..+++|+.|++++|++.
T Consensus 194 ~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (272)
T 3rfs_A 194 KSVPDGVFDRLTSLQYIWLHDNPWD 218 (272)
T ss_dssp SCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CccCHHHHhCCcCCCEEEccCCCcc
Confidence 9877888999999999999999863
No 17
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.90 E-value=2.4e-23 Score=160.28 Aligned_cols=181 Identities=23% Similarity=0.193 Sum_probs=119.5
Q ss_pred ceEEEEEecCCcccccCCCCCCCCCCCcEEEeecCcceeecCccccCCCCccEEEecCcccccCCCccccCCCCccEEEc
Q 037027 23 HRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDL 102 (205)
Q Consensus 23 ~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 102 (205)
++++.++++++.+....+..|+.+++|+.|++.+|.+....+..+..+++|++|++.+|.+....+..+..+++|++|++
T Consensus 45 ~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 124 (390)
T 3o6n_A 45 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 124 (390)
T ss_dssp CCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEEC
Confidence 45677777777766444444566777777777777777555566777777777777777776555666667777777777
Q ss_pred ccccCCcccCcccccCCCCcceeeecccccccCCCCCcCCCCcceEEEeecceeeccc----------------------
Q 037027 103 SYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAI---------------------- 160 (205)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~---------------------- 160 (205)
++|.+. .++...+..+++|++|++++|.+....+..+..+++|+.|++++|.+.+..
T Consensus 125 ~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~ 203 (390)
T 3o6n_A 125 ERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAI 203 (390)
T ss_dssp CSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEEC
T ss_pred CCCccC-cCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccccccccccceeecccccccccCC
Confidence 777776 566555566777777777777776555556666677777777666553211
Q ss_pred -------------------------------------CccccccCCceEEEeecccccccCchhccCCCCCcEEeccCCc
Q 037027 161 -------------------------------------PKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFDNE 203 (205)
Q Consensus 161 -------------------------------------~~~~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~L~~l~l~~n~ 203 (205)
...+..+++|++|++++|.+.+..+..+..+++|+.|++++|.
T Consensus 204 ~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 283 (390)
T 3o6n_A 204 PIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR 283 (390)
T ss_dssp CSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSC
T ss_pred CCcceEEECCCCeeeeccccccccccEEECCCCCCcccHHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCc
Confidence 1123445666677777776665566667777777777777766
Q ss_pred C
Q 037027 204 L 204 (205)
Q Consensus 204 l 204 (205)
+
T Consensus 284 l 284 (390)
T 3o6n_A 284 L 284 (390)
T ss_dssp C
T ss_pred C
Confidence 5
No 18
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.90 E-value=6.8e-23 Score=151.84 Aligned_cols=178 Identities=24% Similarity=0.242 Sum_probs=152.8
Q ss_pred CceEEEEEecCCcccccCCCCCCCCCCCcEEEeecCcceeecCccccCCCCccEEEecCcccccCCCccccCCCCccEEE
Q 037027 22 SHRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLD 101 (205)
Q Consensus 22 ~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 101 (205)
.++++.|+++++.+.+..+..|+++++|+.|++++|.+...... ..+++|++|++++|.+. .++..+..+++|++|+
T Consensus 30 ~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~ 106 (290)
T 1p9a_G 30 PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLD 106 (290)
T ss_dssp CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEE
T ss_pred CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCCEEECCCCcCC-cCchhhccCCCCCEEE
Confidence 35788999999999877788899999999999999998854332 68889999999999988 6677778899999999
Q ss_pred cccccCCcccCcccccCCCCcceeeecccccccCCCCCcCCCCcceEEEeecceeecccCccccccCCceEEEeeccccc
Q 037027 102 LSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQ 181 (205)
Q Consensus 102 l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~ 181 (205)
+++|.+. .++...+..+++|+.|++++|.++...+..+..+++|+.|++++|.+....+..+..+++|++|++++|.++
T Consensus 107 l~~N~l~-~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~ 185 (290)
T 1p9a_G 107 VSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY 185 (290)
T ss_dssp CCSSCCC-CCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CCCCcCc-ccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC
Confidence 9999998 666655688999999999999998766677888999999999999998666667778999999999999999
Q ss_pred ccCchhccCCCCCcEEeccCCcC
Q 037027 182 GEIPRELSNLAELELMSLFDNEL 204 (205)
Q Consensus 182 ~~~~~~l~~~~~L~~l~l~~n~l 204 (205)
.+|..+...++|+.+++++|++
T Consensus 186 -~ip~~~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 186 -TIPKGFFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp -CCCTTTTTTCCCSEEECCSCCB
T ss_pred -ccChhhcccccCCeEEeCCCCc
Confidence 6777888888999999999986
No 19
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.90 E-value=5.2e-23 Score=151.41 Aligned_cols=183 Identities=22% Similarity=0.173 Sum_probs=144.3
Q ss_pred CceEEEEEecCCcccccCCCCCCCCCCCcEEEeecCcceeecCccccCCCCccEEEecCcccccCCCccccCCCCccEEE
Q 037027 22 SHRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLD 101 (205)
Q Consensus 22 ~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 101 (205)
.+.++.|+++++.+....+..|+++++|+.|++++|.+....+..+..+++|++|++++|.+....+..+..+++|++|+
T Consensus 27 ~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (276)
T 2z62_A 27 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 106 (276)
T ss_dssp CTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred CCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEE
Confidence 34688999999988877777888899999999999988876777888899999999999988866667788888999999
Q ss_pred cccccCCcccCcccccCCCCcceeeecccccccC-CCCCcCCCCcceEEEeecceeecccCcccc---------------
Q 037027 102 LSYNALSGEIPANICSNLPFLEYISLSQNMFHGG-IPSALSKCTYLQILGLSFNDFSGAIPKEIG--------------- 165 (205)
Q Consensus 102 l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~-~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~--------------- 165 (205)
+.+|.+. .+....+..+++|++|++++|.++.. .|..+..+++|+.|++++|.+.+..+..+.
T Consensus 107 l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls 185 (276)
T 2z62_A 107 AVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLS 185 (276)
T ss_dssp CTTSCCC-CSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECC
T ss_pred CCCCCcc-ccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecC
Confidence 9988887 45543347788889999988888753 477788888888888888876543332221
Q ss_pred ------------ccCCceEEEeecccccccCchhccCCCCCcEEeccCCcCC
Q 037027 166 ------------NVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFDNELQ 205 (205)
Q Consensus 166 ------------~~~~L~~l~l~~~~l~~~~~~~l~~~~~L~~l~l~~n~l~ 205 (205)
...+|++|++++|.+++..+..+..+++|+.|++++|+++
T Consensus 186 ~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 237 (276)
T 2z62_A 186 LNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 237 (276)
T ss_dssp SSCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBC
T ss_pred CCcccccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCccc
Confidence 2236888888888888666677788999999999999874
No 20
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.90 E-value=1.8e-23 Score=156.00 Aligned_cols=182 Identities=22% Similarity=0.292 Sum_probs=152.1
Q ss_pred CceEEEEEecCCcccccCCCCCCCCCCCcEEEeecCcceeecC-ccccCCCCccEEEecCcccccCCCccccCCCCccEE
Q 037027 22 SHRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIP-SATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDL 100 (205)
Q Consensus 22 ~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L 100 (205)
.++++.|+++++.+. ..+..+..+++|+.|++++|.+....+ ..+..+++|++|++.+|.+....+..+..+++|++|
T Consensus 77 ~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 155 (306)
T 2z66_A 77 TTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVL 155 (306)
T ss_dssp CSCCCEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEE
T ss_pred ccccCEEECCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEE
Confidence 456777777777665 345557778888888888888875444 567888999999999998887777778889999999
Q ss_pred EcccccCCcccCcccccCCCCcceeeecccccccCCCCCcCCCCcceEEEeecceeecccCccccccCCceEEEeecccc
Q 037027 101 DLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRL 180 (205)
Q Consensus 101 ~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l 180 (205)
++++|.+.+......+..+++|+.|++++|.+++..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+
T Consensus 156 ~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 235 (306)
T 2z66_A 156 KMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI 235 (306)
T ss_dssp ECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCC
T ss_pred ECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCC
Confidence 99999987423333447889999999999999877788899999999999999999877777788899999999999999
Q ss_pred cccCchhccCCC-CCcEEeccCCcC
Q 037027 181 QGEIPRELSNLA-ELELMSLFDNEL 204 (205)
Q Consensus 181 ~~~~~~~l~~~~-~L~~l~l~~n~l 204 (205)
++..+..+..++ +|+.|++++|++
T Consensus 236 ~~~~~~~~~~~~~~L~~L~L~~N~~ 260 (306)
T 2z66_A 236 MTSKKQELQHFPSSLAFLNLTQNDF 260 (306)
T ss_dssp CBCSSSSCCCCCTTCCEEECTTCCE
T ss_pred cccCHHHHHhhhccCCEEEccCCCe
Confidence 988888999885 899999999986
No 21
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.90 E-value=7e-23 Score=160.58 Aligned_cols=179 Identities=22% Similarity=0.208 Sum_probs=117.3
Q ss_pred ceEEEEEecCCcccccCCCCCCCCCCCcEEEeecCcceeecCccccCCCCccEEEecCcccccCCCccccCCCCccEEEc
Q 037027 23 HRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDL 102 (205)
Q Consensus 23 ~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 102 (205)
++++.|+++++.+.+..+..|+++++|+.|++++|.+....+..|..+++|++|++.+|.++...+..+..+++|++|++
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 154 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL 154 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence 57889999999998888888999999999999999998777788888999999999998888666666777888888888
Q ss_pred ccccCCcccCcccc-------------------------cCCCCcceeeecccccccCCCCCcCCCCcceEEEeecceee
Q 037027 103 SYNALSGEIPANIC-------------------------SNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFS 157 (205)
Q Consensus 103 ~~~~~~~~~~~~~~-------------------------~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~ 157 (205)
++|.+. .++...+ ..+++|+.|++++|.+++. +.+..+++|+.|++++|.+.
T Consensus 155 ~~N~l~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~ 231 (452)
T 3zyi_A 155 RNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM--PNLTPLVGLEELEMSGNHFP 231 (452)
T ss_dssp CSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC--CCCTTCTTCCEEECTTSCCS
T ss_pred CCCCcc-eeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc--ccccccccccEEECcCCcCc
Confidence 888775 4433222 3344444444444444321 12344445555555555554
Q ss_pred cccCccccccCCceEEEeecccccccCchhccCCCCCcEEeccCCcC
Q 037027 158 GAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFDNEL 204 (205)
Q Consensus 158 ~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~L~~l~l~~n~l 204 (205)
+..+..+..+++|++|++++|.+++..+..|..+++|+.|++++|.+
T Consensus 232 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l 278 (452)
T 3zyi_A 232 EIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNL 278 (452)
T ss_dssp EECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred ccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcC
Confidence 44444455555555555555555544444455555555555555543
No 22
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.90 E-value=6e-23 Score=160.44 Aligned_cols=179 Identities=23% Similarity=0.269 Sum_probs=106.5
Q ss_pred ceEEEEEecCCcccccCCCCCCCCCCCcEEEeecCcceeecCccccCCCCccEEEecCcccccCCCccccCCCCccEEEc
Q 037027 23 HRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDL 102 (205)
Q Consensus 23 ~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 102 (205)
++++.|+++++.+....+..|+++++|+.|++++|.+....+..|..+++|++|++.+|.++...+..+..+++|++|++
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 143 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL 143 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEEC
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeC
Confidence 46788888888888777788888888888888888888666677888888888888888877555556667777777777
Q ss_pred ccccCCcccCccc-------------------------ccCCCCcceeeecccccccCCCCCcCCCCcceEEEeecceee
Q 037027 103 SYNALSGEIPANI-------------------------CSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFS 157 (205)
Q Consensus 103 ~~~~~~~~~~~~~-------------------------~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~ 157 (205)
++|.+. .++... +..+++|+.|++++|.++. +| .+..+++|+.|++++|.+.
T Consensus 144 ~~N~i~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~ 220 (440)
T 3zyj_A 144 RNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE-IP-NLTPLIKLDELDLSGNHLS 220 (440)
T ss_dssp CSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS-CC-CCTTCSSCCEEECTTSCCC
T ss_pred CCCccc-ccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc-cc-ccCCCcccCEEECCCCccC
Confidence 777665 333322 2333444444444444331 11 2333444444444444444
Q ss_pred cccCccccccCCceEEEeecccccccCchhccCCCCCcEEeccCCcC
Q 037027 158 GAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFDNEL 204 (205)
Q Consensus 158 ~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~L~~l~l~~n~l 204 (205)
+..+..+..+++|++|++++|.+++..+..|..+++|+.|++++|.+
T Consensus 221 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l 267 (440)
T 3zyj_A 221 AIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNL 267 (440)
T ss_dssp EECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCC
T ss_pred ccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCC
Confidence 34344444444444444444444443344444444444444444433
No 23
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.90 E-value=1.7e-22 Score=148.26 Aligned_cols=193 Identities=25% Similarity=0.346 Sum_probs=167.2
Q ss_pred CCCCccceeeecCCCceEEEEEecCCcccccCCCCCCCCCCCcEEEeecCcceeecCccccCCCCccEEEecCcccccCC
Q 037027 8 SPVCNWTGVTCDVHSHRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAF 87 (205)
Q Consensus 8 ~~~c~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 87 (205)
...|.|.+..|.+.. ..+.++++++.++ .+|..+. ++++.|++++|.+....+..+..+++|++|++.+|.++...
T Consensus 2 ~~~C~~~~~~C~c~~-~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~ 77 (270)
T 2o6q_A 2 EALCKKDGGVCSCNN-NKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLP 77 (270)
T ss_dssp CCCBGGGTCSBEEET-TTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCC
T ss_pred CccCCCCCCCCEeCC-CCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeC
Confidence 468999999997754 4667899999887 4665543 67999999999998766678999999999999999998666
Q ss_pred CccccCCCCccEEEcccccCCcccCcccccCCCCcceeeecccccccCCCCCcCCCCcceEEEeecceeecccCcccccc
Q 037027 88 PSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNV 167 (205)
Q Consensus 88 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~ 167 (205)
+..+..+++|++|++++|.+. .++...+..+++|+.|++++|.++...+..+..+++|+.|++++|.+.+..+..+..+
T Consensus 78 ~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 156 (270)
T 2o6q_A 78 AGIFKELKNLETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKL 156 (270)
T ss_dssp TTTTSSCTTCCEEECCSSCCC-CCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred hhhhcCCCCCCEEECCCCcCC-cCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCC
Confidence 666788999999999999998 6776666889999999999999987777788999999999999999987766778889
Q ss_pred CCceEEEeecccccccCchhccCCCCCcEEeccCCcCC
Q 037027 168 TKLKELYLVRNRLQGEIPRELSNLAELELMSLFDNELQ 205 (205)
Q Consensus 168 ~~L~~l~l~~~~l~~~~~~~l~~~~~L~~l~l~~n~l~ 205 (205)
++|++|++++|.+++..+..|..+++|++|++++|+++
T Consensus 157 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 194 (270)
T 2o6q_A 157 TSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK 194 (270)
T ss_dssp TTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred cccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCC
Confidence 99999999999999777778999999999999999874
No 24
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.90 E-value=1e-22 Score=159.68 Aligned_cols=174 Identities=20% Similarity=0.213 Sum_probs=131.2
Q ss_pred EEEEecCCcccccCCCCCCCCCCCcEEEeecCcceeecCccccCCCCccEEEecCcccccCCCccccCCCCccEEEcccc
Q 037027 26 TVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYN 105 (205)
Q Consensus 26 ~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 105 (205)
..++.++..+. .+|..+. ++++.|++++|.+....+..|..+++|++|++++|.+....+..+..+.+|++|++++|
T Consensus 57 ~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n 133 (452)
T 3zyi_A 57 SKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN 133 (452)
T ss_dssp CEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred cEEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCC
Confidence 34666666665 4565443 68999999999999888889999999999999999998777788999999999999999
Q ss_pred cCCcccCcccccCCCCcceeeecccccccCCCCCcCCCCcceEEEeec-------------------------ceeeccc
Q 037027 106 ALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSF-------------------------NDFSGAI 160 (205)
Q Consensus 106 ~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~-------------------------~~~~~~~ 160 (205)
.+. .++...+..+++|+.|++++|.+....+..+..+++|+.|++++ |.+.+.
T Consensus 134 ~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~- 211 (452)
T 3zyi_A 134 WLT-VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM- 211 (452)
T ss_dssp CCS-BCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-
T ss_pred cCC-ccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-
Confidence 998 67766668899999999999988755444555555555555555 433321
Q ss_pred CccccccCCceEEEeecccccccCchhccCCCCCcEEeccCCcCC
Q 037027 161 PKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFDNELQ 205 (205)
Q Consensus 161 ~~~~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~L~~l~l~~n~l~ 205 (205)
+ .+..+++|++|++++|.+++..+..|..+++|+.|++++|.++
T Consensus 212 ~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~ 255 (452)
T 3zyi_A 212 P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVS 255 (452)
T ss_dssp C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCC
T ss_pred c-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCc
Confidence 1 2444556666666667666666677777777777777777653
No 25
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.89 E-value=1.9e-22 Score=157.59 Aligned_cols=181 Identities=24% Similarity=0.221 Sum_probs=133.4
Q ss_pred CCceEEEEEecCCcccccCCCCCCCCCCCcEEEeecCcceeecCccccCCCCccEEEecCccccc---------------
Q 037027 21 HSHRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSG--------------- 85 (205)
Q Consensus 21 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--------------- 85 (205)
..++++.|++++|.+....+..|.++++|+.|++++|.+....+..|..+++|++|++.+|.+..
T Consensus 86 ~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L 165 (440)
T 3zyj_A 86 HLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRL 165 (440)
T ss_dssp SCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEE
T ss_pred CCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEe
Confidence 33455556666655554444555555555555555555553333344555555555555554432
Q ss_pred ----------CCCccccCCCCccEEEcccccCCcccCcccccCCCCcceeeecccccccCCCCCcCCCCcceEEEeecce
Q 037027 86 ----------AFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFND 155 (205)
Q Consensus 86 ----------~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~ 155 (205)
..+..+..+.+|++|++++|.+. .++. +..+++|+.|++++|.+++..+..+..+++|+.|++++|.
T Consensus 166 ~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~--~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~ 242 (440)
T 3zyj_A 166 DLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIPN--LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQ 242 (440)
T ss_dssp ECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCCC--CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred CCCCCCCcceeCcchhhcccccCeecCCCCcCc-cccc--cCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCc
Confidence 22234556778888888888886 5553 3678899999999999998778899999999999999999
Q ss_pred eecccCccccccCCceEEEeecccccccCchhccCCCCCcEEeccCCcC
Q 037027 156 FSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFDNEL 204 (205)
Q Consensus 156 ~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~L~~l~l~~n~l 204 (205)
+.+..+..+..+++|++|++++|++++..+..+..+++|+.|++++|++
T Consensus 243 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 243 IQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPW 291 (440)
T ss_dssp CCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCE
T ss_pred eeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCc
Confidence 9888888899999999999999999977788899999999999999986
No 26
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.89 E-value=8.2e-23 Score=165.26 Aligned_cols=180 Identities=23% Similarity=0.192 Sum_probs=108.6
Q ss_pred eEEEEEecCCcccccCCCCCCCCCCCcEEEeecCcceeecCccccCCCCccEEEecCcccccCCCccccCCCCccEEEcc
Q 037027 24 RVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLS 103 (205)
Q Consensus 24 ~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 103 (205)
+++.++++++.+....+..|+.+++|+.|++++|.+....+..|..+++|++|++++|.+....+..+..+++|++|+++
T Consensus 52 ~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 131 (597)
T 3oja_B 52 NQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLE 131 (597)
T ss_dssp CCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEee
Confidence 45566666666654444445556666666666666665555566666666666666666665555555566666666666
Q ss_pred cccCCcccCcccccCCCCcceeeecccccccCCCCCcCCCCcceEEEeecceeeccc-----------------------
Q 037027 104 YNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAI----------------------- 160 (205)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~----------------------- 160 (205)
+|.+. .++...+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.+..
T Consensus 132 ~n~l~-~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~ 210 (597)
T 3oja_B 132 RNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIP 210 (597)
T ss_dssp SSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECC
T ss_pred CCCCC-CCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccCC
Confidence 66665 455544455666666666666665555555566666666666655443211
Q ss_pred ------------------------------------CccccccCCceEEEeecccccccCchhccCCCCCcEEeccCCcC
Q 037027 161 ------------------------------------PKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFDNEL 204 (205)
Q Consensus 161 ------------------------------------~~~~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~L~~l~l~~n~l 204 (205)
+..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+
T Consensus 211 ~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 290 (597)
T 3oja_B 211 IAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRL 290 (597)
T ss_dssp TTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCC
T ss_pred chhheeeccCCcccccccccCCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCC
Confidence 12344556677777777777666666677777777777776655
No 27
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.89 E-value=1.8e-22 Score=159.12 Aligned_cols=181 Identities=17% Similarity=0.157 Sum_probs=155.4
Q ss_pred CceEEEEEecCCcccccCCCCCCCCCCCcEEEeecCcceeecCccccCCCCccEEEecCcccccCCCccccCCCCccEEE
Q 037027 22 SHRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLD 101 (205)
Q Consensus 22 ~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 101 (205)
.++++.|+++++.+.+..+..|+++++|+.|++++|.+....+.+|..+++|++|++.+|.+....+..+..+++|++|+
T Consensus 31 ~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 110 (477)
T 2id5_A 31 PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLD 110 (477)
T ss_dssp CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEE
T ss_pred CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEE
Confidence 45789999999999988888999999999999999999988888999999999999999999866566678899999999
Q ss_pred cccccCCcccCcccccCCCCcceeeecccccccCCCCCcCCCCcceEEEeecceeecccCccccccCCceEEEeeccccc
Q 037027 102 LSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQ 181 (205)
Q Consensus 102 l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~ 181 (205)
+++|.+. .+....+..+++|+.|++++|.+....+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.
T Consensus 111 Ls~n~i~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~ 189 (477)
T 2id5_A 111 ISENKIV-ILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNIN 189 (477)
T ss_dssp CTTSCCC-EECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCC
T ss_pred CCCCccc-cCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCc
Confidence 9999997 444444588999999999999998777788899999999999999887666667788899999999999888
Q ss_pred ccCchhccCCCCCcEEeccCCc
Q 037027 182 GEIPRELSNLAELELMSLFDNE 203 (205)
Q Consensus 182 ~~~~~~l~~~~~L~~l~l~~n~ 203 (205)
+..+..+..+++|+.|++++|+
T Consensus 190 ~~~~~~~~~l~~L~~L~l~~~~ 211 (477)
T 2id5_A 190 AIRDYSFKRLYRLKVLEISHWP 211 (477)
T ss_dssp EECTTCSCSCTTCCEEEEECCT
T ss_pred EeChhhcccCcccceeeCCCCc
Confidence 7767778888888877777764
No 28
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.89 E-value=1.7e-22 Score=161.81 Aligned_cols=182 Identities=19% Similarity=0.115 Sum_probs=149.4
Q ss_pred ceEEEEEecCCcccccCCCCCCCCCCCcEEEeecCcceeecCccccCCCCccEEEecCcccccCCCccccCCCCccEEEc
Q 037027 23 HRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDL 102 (205)
Q Consensus 23 ~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 102 (205)
++++.|+++++.+.+..|..|+++++|+.|++++|.+....+.+|..+++|++|++++|.+....+..+..+.+|++|++
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 105 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL 105 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEEC
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEEC
Confidence 47999999999998888888999999999999999999777788999999999999999998666666889999999999
Q ss_pred ccccCCcccCcccccCCCCcceeeeccccc-ccCCCCCcCCCCcceEEEeecceeecccCccccccCCceEEEeeccccc
Q 037027 103 SYNALSGEIPANICSNLPFLEYISLSQNMF-HGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQ 181 (205)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~-~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~ 181 (205)
++|.+.+......+..+++|++|++++|.+ ....+..+..+++|+.|++++|.+.+..+..+..+++|+++++..|.+.
T Consensus 106 s~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~ 185 (549)
T 2z81_A 106 MGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA 185 (549)
T ss_dssp TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST
T ss_pred CCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCccc
Confidence 999987321223347889999999999984 4333467899999999999999998878888888888888888888776
Q ss_pred ccCchhccCCCCCcEEeccCCcC
Q 037027 182 GEIPRELSNLAELELMSLFDNEL 204 (205)
Q Consensus 182 ~~~~~~l~~~~~L~~l~l~~n~l 204 (205)
......+..+++|++|++++|.+
T Consensus 186 ~~~~~~~~~l~~L~~L~L~~n~l 208 (549)
T 2z81_A 186 FLLEIFADILSSVRYLELRDTNL 208 (549)
T ss_dssp THHHHHHHSTTTBSEEEEESCBC
T ss_pred ccchhhHhhcccccEEEccCCcc
Confidence 33223335677777777777765
No 29
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.89 E-value=4.8e-22 Score=149.97 Aligned_cols=192 Identities=23% Similarity=0.300 Sum_probs=134.3
Q ss_pred CCCccceeeecC---------CCceEEEEEecCCcccccCCCCCCCCCCCcEEEeecCcceeecCccccCCCCccEEEec
Q 037027 9 PVCNWTGVTCDV---------HSHRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLR 79 (205)
Q Consensus 9 ~~c~~~~~~~~~---------~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 79 (205)
..|++....|.. ..++++.|+++++.+....+..|+++++|+.|++++|.+....+..+..+++|++|+++
T Consensus 31 c~c~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 31 CHCHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp CEEETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred CcccCCEEECCCCCccccCCCCCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 346777777742 23578999999999987778889999999999999999987778888888999999998
Q ss_pred CcccccCCCccccCCCCccEEEcccccCCcccCcccccCCC---------------------------------------
Q 037027 80 GNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLP--------------------------------------- 120 (205)
Q Consensus 80 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~--------------------------------------- 120 (205)
+|.+. ..+..+. .+|++|++++|.+. .++...+..++
T Consensus 111 ~n~l~-~l~~~~~--~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~ 186 (332)
T 2ft3_A 111 KNHLV-EIPPNLP--SSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTG 186 (332)
T ss_dssp SSCCC-SCCSSCC--TTCCEEECCSSCCC-CCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSS
T ss_pred CCcCC-ccCcccc--ccCCEEECCCCccC-ccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCc
Confidence 88776 3333221 34444444444443 22222223333
Q ss_pred -------CcceeeecccccccCCCCCcCCCCcceEEEeecceeecccCccccccCCceEEEeecccccccCchhccCCCC
Q 037027 121 -------FLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAE 193 (205)
Q Consensus 121 -------~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~ 193 (205)
+|+.+++++|.+++..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.++ .+|..+..+++
T Consensus 187 l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~ 265 (332)
T 2ft3_A 187 IPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKL 265 (332)
T ss_dssp CCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTT
T ss_pred cCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCcc
Confidence 3445555555554444456667777888888888777666667777888888888888887 66777888888
Q ss_pred CcEEeccCCcCC
Q 037027 194 LELMSLFDNELQ 205 (205)
Q Consensus 194 L~~l~l~~n~l~ 205 (205)
|+.|++++|+++
T Consensus 266 L~~L~l~~N~l~ 277 (332)
T 2ft3_A 266 LQVVYLHTNNIT 277 (332)
T ss_dssp CCEEECCSSCCC
T ss_pred CCEEECCCCCCC
Confidence 888888888764
No 30
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.88 E-value=9.1e-22 Score=145.78 Aligned_cols=178 Identities=26% Similarity=0.198 Sum_probs=153.9
Q ss_pred CCceEEEEEecCCcccccCCCCCCCCCCCcEEEeecCcceeecCccccCCCCccEEEecCcccccCCCccccCCCCccEE
Q 037027 21 HSHRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDL 100 (205)
Q Consensus 21 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L 100 (205)
..++++.++++++.++ .+|..+. ++++.|++++|.+....+..+..+++|++|++.+|.++...+ . ..+++|++|
T Consensus 8 ~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~-~~l~~L~~L 82 (290)
T 1p9a_G 8 KVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV-D-GTLPVLGTL 82 (290)
T ss_dssp CSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC-C-SCCTTCCEE
T ss_pred ccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC-C-CCCCcCCEE
Confidence 3447888999999887 5565553 689999999999997778889999999999999999874332 2 678999999
Q ss_pred EcccccCCcccCcccccCCCCcceeeecccccccCCCCCcCCCCcceEEEeecceeecccCccccccCCceEEEeecccc
Q 037027 101 DLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRL 180 (205)
Q Consensus 101 ~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l 180 (205)
++++|.+. .++..+ ..+++|+.|++++|.++...+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|++
T Consensus 83 ~Ls~N~l~-~l~~~~-~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 160 (290)
T 1p9a_G 83 DLSHNQLQ-SLPLLG-QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL 160 (290)
T ss_dssp ECCSSCCS-SCCCCT-TTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred ECCCCcCC-cCchhh-ccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcC
Confidence 99999997 777655 7889999999999999976668899999999999999999877777788899999999999999
Q ss_pred cccCchhccCCCCCcEEeccCCcCC
Q 037027 181 QGEIPRELSNLAELELMSLFDNELQ 205 (205)
Q Consensus 181 ~~~~~~~l~~~~~L~~l~l~~n~l~ 205 (205)
++..+..+..+++|+.|++++|.++
T Consensus 161 ~~l~~~~~~~l~~L~~L~L~~N~l~ 185 (290)
T 1p9a_G 161 TELPAGLLNGLENLDTLLLQENSLY 185 (290)
T ss_dssp SCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CccCHHHhcCcCCCCEEECCCCcCC
Confidence 9776778899999999999999874
No 31
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.88 E-value=4.1e-22 Score=156.17 Aligned_cols=115 Identities=25% Similarity=0.278 Sum_probs=69.3
Q ss_pred ccccCCCCccEEEcccccCCcccCcccccCCCCcceeeecccccccCCCCCcCCCCcceEEEeecceeecccCccccccC
Q 037027 89 SFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVT 168 (205)
Q Consensus 89 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~ 168 (205)
..+..+++|++|++++|.+. ......+..+++|+.|++++|.+++..+..+..+++|+.|++++|.+.+..+..+..++
T Consensus 293 ~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 371 (455)
T 3v47_A 293 SVFSHFTDLEQLTLAQNEIN-KIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLP 371 (455)
T ss_dssp TTTTTCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCT
T ss_pred hhcccCCCCCEEECCCCccc-ccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccc
Confidence 33444555556666665555 23222235556666666666666554455566666666666666666655566666666
Q ss_pred CceEEEeecccccccCchhccCCCCCcEEeccCCcC
Q 037027 169 KLKELYLVRNRLQGEIPRELSNLAELELMSLFDNEL 204 (205)
Q Consensus 169 ~L~~l~l~~~~l~~~~~~~l~~~~~L~~l~l~~n~l 204 (205)
+|++|++++|++++..+..+..+++|+.|++++|++
T Consensus 372 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l 407 (455)
T 3v47_A 372 NLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW 407 (455)
T ss_dssp TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred cccEEECCCCccccCCHhHhccCCcccEEEccCCCc
Confidence 677777777766655555566667777777777665
No 32
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.88 E-value=6.4e-22 Score=155.06 Aligned_cols=135 Identities=19% Similarity=0.174 Sum_probs=84.6
Q ss_pred ceEEEEEecCCcccccCCCCCCCCCCCcEEEeecCcce-eecCccccCCCCccEEEecCcccccCCCccccCCCCccEEE
Q 037027 23 HRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLS-GSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLD 101 (205)
Q Consensus 23 ~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 101 (205)
++++.|+++++.+.+..|..|+++++|+.|++++|.+. ...+..|..+++|++|++++|.+....+..+..+.+|++|+
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 109 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT 109 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence 56888888888887666777788888888888877764 23355677777777777777777655566666666777777
Q ss_pred cccccCCcccCc-ccccCCCCcceeeecccccccCCCCC-cCCCCcceEEEeecceee
Q 037027 102 LSYNALSGEIPA-NICSNLPFLEYISLSQNMFHGGIPSA-LSKCTYLQILGLSFNDFS 157 (205)
Q Consensus 102 l~~~~~~~~~~~-~~~~~~~~L~~l~l~~~~~~~~~~~~-~~~~~~L~~l~l~~~~~~ 157 (205)
+++|.+.+..+. ..+..+++|++|++++|.+++..+.. +..+++|+.|++++|.+.
T Consensus 110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~ 167 (455)
T 3v47_A 110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK 167 (455)
T ss_dssp CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBS
T ss_pred CCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccc
Confidence 776666532221 12244555556666555555433332 444555555555554443
No 33
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.88 E-value=2.1e-21 Score=146.35 Aligned_cols=193 Identities=21% Similarity=0.242 Sum_probs=134.1
Q ss_pred CCCccceeeecC---------CCceEEEEEecCCcccccCCCCCCCCCCCcEEEeecCcceeecCccccCCCCccEEEec
Q 037027 9 PVCNWTGVTCDV---------HSHRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLR 79 (205)
Q Consensus 9 ~~c~~~~~~~~~---------~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 79 (205)
..|.+....|.. ..+.++.|+++++.+.+..+..|+++++|+.|++++|.+....+..+..+++|++|+++
T Consensus 29 c~c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 29 CQCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp CEEETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CcCCCeEEEecCCCccccCccCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 356777777742 23578899999999987777789999999999999999987778889999999999999
Q ss_pred CcccccCCCccccCCCCccEEEcccccCCcccCcccccCCCCcceeeeccccccc--CCCCCcCCC--------------
Q 037027 80 GNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHG--GIPSALSKC-------------- 143 (205)
Q Consensus 80 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~--~~~~~~~~~-------------- 143 (205)
+|.++ ..+..+. .+|++|++++|.+. .++...+..+++|+.+++++|.+.. ..+..+..+
T Consensus 109 ~n~l~-~l~~~~~--~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~ 184 (330)
T 1xku_A 109 KNQLK-ELPEKMP--KTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT 184 (330)
T ss_dssp SSCCS-BCCSSCC--TTCCEEECCSSCCC-BBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC
T ss_pred CCcCC-ccChhhc--ccccEEECCCCccc-ccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc
Confidence 99877 3443332 45666666666655 3333333445555555555554431 222333333
Q ss_pred -------CcceEEEeecceeecccCccccccCCceEEEeecccccccCchhccCCCCCcEEeccCCcCC
Q 037027 144 -------TYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFDNELQ 205 (205)
Q Consensus 144 -------~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~L~~l~l~~n~l~ 205 (205)
++|+.|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.++
T Consensus 185 ~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 253 (330)
T 1xku_A 185 TIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV 253 (330)
T ss_dssp SCCSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS
T ss_pred cCCccccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc
Confidence 45666666666665555667777788888888888887666667788888888888888763
No 34
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.88 E-value=1.4e-21 Score=154.14 Aligned_cols=112 Identities=20% Similarity=0.186 Sum_probs=63.7
Q ss_pred CCceEEEEEecCCcccccCCCCCCCCCCCcEEEeecCcceeecCccccCCCCccEEEecCcccccCCCccccCCCCccEE
Q 037027 21 HSHRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDL 100 (205)
Q Consensus 21 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L 100 (205)
..++++.|++++|.+....|..|+++++|+.|++++|.+....+..|..+++|++|++++|.+....+..+..+++|++|
T Consensus 54 ~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 133 (477)
T 2id5_A 54 SFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSL 133 (477)
T ss_dssp TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred CCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEE
Confidence 44567777777776665566666666777777777666664444455666666666666666554444555555555555
Q ss_pred EcccccCCcccCcccccCCCCcceeeecccccc
Q 037027 101 DLSYNALSGEIPANICSNLPFLEYISLSQNMFH 133 (205)
Q Consensus 101 ~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~ 133 (205)
++.+|.+. .+....+..+++|+.|++++|.++
T Consensus 134 ~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~ 165 (477)
T 2id5_A 134 EVGDNDLV-YISHRAFSGLNSLEQLTLEKCNLT 165 (477)
T ss_dssp EECCTTCC-EECTTSSTTCTTCCEEEEESCCCS
T ss_pred ECCCCccc-eeChhhccCCCCCCEEECCCCcCc
Confidence 55555554 222222244444444444444443
No 35
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.88 E-value=2.3e-21 Score=146.10 Aligned_cols=181 Identities=22% Similarity=0.271 Sum_probs=128.8
Q ss_pred CCCceEEEEEecCCcccccCCCCCCCCCCCcEEEeecCcceeecC---------------------ccccCCCCccEEEe
Q 037027 20 VHSHRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIP---------------------SATFITHTLKYVDL 78 (205)
Q Consensus 20 ~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~---------------------~~~~~l~~L~~L~l 78 (205)
...++++.|+++++.+.+..|..|+++++|+.|++++|.+..... ..+..+++|++|++
T Consensus 73 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 152 (330)
T 1xku_A 73 KNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVEL 152 (330)
T ss_dssp TTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEEC
T ss_pred ccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhcccccEEECCCCcccccCHhHhcCCccccEEEC
Confidence 355688999999998887778888889999999998887763211 12334455555555
Q ss_pred cCccccc--CCCccccCCCCccEEEcccccCCcccCcccccCCCCcceeeecccccccCCCCCcCCCCcceEEEeeccee
Q 037027 79 RGNQLSG--AFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDF 156 (205)
Q Consensus 79 ~~~~~~~--~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~ 156 (205)
.+|.+.. ..+..+..+++|++|++++|.+. .++... .+.|+.+++++|.+++..+..+..+++|+.|++++|.+
T Consensus 153 ~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~---~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 228 (330)
T 1xku_A 153 GTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGL---PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSI 228 (330)
T ss_dssp CSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCSSC---CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCC
T ss_pred CCCcCCccCcChhhccCCCCcCEEECCCCccc-cCCccc---cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcC
Confidence 5555432 33444555666666666666665 444433 25677777777777766667788888888888888888
Q ss_pred ecccCccccccCCceEEEeecccccccCchhccCCCCCcEEeccCCcCC
Q 037027 157 SGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFDNELQ 205 (205)
Q Consensus 157 ~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~L~~l~l~~n~l~ 205 (205)
.+..+..+..+++|++|++++|.++ .+|..+..+++|++|++++|+++
T Consensus 229 ~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~ 276 (330)
T 1xku_A 229 SAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS 276 (330)
T ss_dssp CEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCC
T ss_pred ceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCC
Confidence 7666667778888888888888888 66777888888888888888764
No 36
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.87 E-value=6.1e-22 Score=160.34 Aligned_cols=179 Identities=19% Similarity=0.224 Sum_probs=92.4
Q ss_pred eEEEEEecCCcccccCCCCCCCCCCCcEEEeecCcceeecC-ccccCCCCccEEEecCcccccCCCccccCCCCccEEEc
Q 037027 24 RVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIP-SATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDL 102 (205)
Q Consensus 24 ~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 102 (205)
+++.|++++|.+.. .|..+..+++|+.|++++|.+....+ ..+..+++|++|++++|.+....+..+..+++|++|++
T Consensus 377 ~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 455 (606)
T 3vq2_A 377 SLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKM 455 (606)
T ss_dssp CCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEEC
T ss_pred cccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEEC
Confidence 34444444444332 23444455555555555555543333 34445555555555555555444445555555555555
Q ss_pred ccccCCcccCcccccCCCCcceeeecccccccCCCCCcCCCCcceEEEeecceeecccCccccccCCceEEEeecccccc
Q 037027 103 SYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQG 182 (205)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~ 182 (205)
++|.+.+......+..+++|+.|++++|.+++..+..+..+++|+.|++++|.+.+..|..+..+++|++|++++|+++
T Consensus 456 ~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~- 534 (606)
T 3vq2_A 456 AGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE- 534 (606)
T ss_dssp TTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-
T ss_pred CCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-
Confidence 5555543212222245555566666655555444555555555666666666555554555555556666666666555
Q ss_pred cCchhccCCC-CCcEEeccCCcC
Q 037027 183 EIPRELSNLA-ELELMSLFDNEL 204 (205)
Q Consensus 183 ~~~~~l~~~~-~L~~l~l~~n~l 204 (205)
.+|..+..++ +|+.+++++|++
T Consensus 535 ~~p~~~~~l~~~L~~l~l~~N~~ 557 (606)
T 3vq2_A 535 TSKGILQHFPKSLAFFNLTNNSV 557 (606)
T ss_dssp CEESCGGGSCTTCCEEECCSCCC
T ss_pred ccCHhHhhhcccCcEEEccCCCc
Confidence 3444455554 366666666554
No 37
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.87 E-value=3.3e-22 Score=152.07 Aligned_cols=185 Identities=21% Similarity=0.220 Sum_probs=140.5
Q ss_pred cCCCceEEEEEecCCcccccCCCCCCCCCCCcEEEeecCcceeecCccccCCCCccEEEecCcccccCCC-ccccCCCCc
Q 037027 19 DVHSHRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFP-SFIFNKSSL 97 (205)
Q Consensus 19 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L 97 (205)
....++++.|++++|.+.+..+..|+++++|+.|++++|.+....+..+..+++|++|++++|.+..... ..+..+++|
T Consensus 72 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L 151 (353)
T 2z80_A 72 LQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKL 151 (353)
T ss_dssp TTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTC
T ss_pred hccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCC
Confidence 3456789999999999987778889999999999999999985555558899999999999999884333 367889999
Q ss_pred cEEEccccc-CCcccCcccccCCCCcceeeecccccccCCCCCcCCCCcceEEEeecceeeccc----------------
Q 037027 98 QDLDLSYNA-LSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAI---------------- 160 (205)
Q Consensus 98 ~~L~l~~~~-~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~---------------- 160 (205)
++|++++|. +. .++...+..+++|+.+++++|.+.+..+..+..+++|+.|++++|.+....
T Consensus 152 ~~L~l~~n~~~~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~ 230 (353)
T 2z80_A 152 QILRVGNMDTFT-KIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELR 230 (353)
T ss_dssp CEEEEEESSSCC-EECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEE
T ss_pred cEEECCCCcccc-ccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECC
Confidence 999999984 55 555555578899999999999988777778888777777777776543211
Q ss_pred ---------------------------------------CccccccCCceEEEeecccccccCchhccCCCCCcEEeccC
Q 037027 161 ---------------------------------------PKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFD 201 (205)
Q Consensus 161 ---------------------------------------~~~~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~L~~l~l~~ 201 (205)
|..+..+++|++|++++|+++......|..+++|++|++++
T Consensus 231 ~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 310 (353)
T 2z80_A 231 DTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHT 310 (353)
T ss_dssp SCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeC
Confidence 11234456777777777777733333357777777777777
Q ss_pred CcC
Q 037027 202 NEL 204 (205)
Q Consensus 202 n~l 204 (205)
|++
T Consensus 311 N~~ 313 (353)
T 2z80_A 311 NPW 313 (353)
T ss_dssp SCB
T ss_pred CCc
Confidence 765
No 38
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.87 E-value=2.4e-21 Score=140.68 Aligned_cols=161 Identities=22% Similarity=0.246 Sum_probs=144.5
Q ss_pred CceEEEEEecCCcccccCCCCCCCCCCCcEEEeecCcceeecCccccCCCCccEEEecCcccccCCCccccCCCCccEEE
Q 037027 22 SHRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLD 101 (205)
Q Consensus 22 ~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 101 (205)
.+.++.|+++++.+.+..+..|+++++|+.|++++|.+....+..+..+++|++|++++|.++...+..+..+++|++|+
T Consensus 34 ~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 113 (251)
T 3m19_A 34 PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLY 113 (251)
T ss_dssp CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEE
Confidence 35789999999999988888899999999999999999977777889999999999999999977777788899999999
Q ss_pred cccccCCcccCcccccCCCCcceeeecccccccCCCCCcCCCCcceEEEeecceeecccCccccccCCceEEEeeccccc
Q 037027 102 LSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQ 181 (205)
Q Consensus 102 l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~ 181 (205)
+++|.+. .++...+..+++|+.|++++|.++...+..+..+++|+.|++++|.+.+..+..+..+++|+++++++|++.
T Consensus 114 L~~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 114 LGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFD 192 (251)
T ss_dssp CCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred cCCCcCC-CcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCcee
Confidence 9999998 677666688999999999999998766668999999999999999998777778889999999999999987
Q ss_pred cc
Q 037027 182 GE 183 (205)
Q Consensus 182 ~~ 183 (205)
..
T Consensus 193 c~ 194 (251)
T 3m19_A 193 CS 194 (251)
T ss_dssp TT
T ss_pred CC
Confidence 43
No 39
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.87 E-value=8.7e-22 Score=159.41 Aligned_cols=183 Identities=19% Similarity=0.169 Sum_probs=148.9
Q ss_pred CCceEEEEEecCCccccc--CCCCCCCCCCCcEEEeecCcceeecCccccCCCCccEEEecCcccccCCC-ccccCCCCc
Q 037027 21 HSHRVTVFNVSGLNLTGT--IPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFP-SFIFNKSSL 97 (205)
Q Consensus 21 ~~~~l~~l~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L 97 (205)
..++++.|++++|.+.+. .+..+..+++|+.|++++|.+.. .+..+..+++|+.|++.+|.+....+ ..+..+++|
T Consensus 348 ~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L 426 (606)
T 3vq2_A 348 ALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKL 426 (606)
T ss_dssp CCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTC
T ss_pred cCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccC
Confidence 455677777777776644 36666777888888888888773 55777888889999999888876555 567788899
Q ss_pred cEEEcccccCCcccCcccccCCCCcceeeeccccccc-CCCCCcCCCCcceEEEeecceeecccCccccccCCceEEEee
Q 037027 98 QDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHG-GIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLV 176 (205)
Q Consensus 98 ~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~-~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~ 176 (205)
++|++++|.+.+..+..+ ..+++|+++++++|.+++ ..+..+..+++|+.|++++|.+.+..+..+..+++|++|+++
T Consensus 427 ~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls 505 (606)
T 3vq2_A 427 LYLDISYTNTKIDFDGIF-LGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMS 505 (606)
T ss_dssp CEEECTTSCCEECCTTTT-TTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred CEEECcCCCCCccchhhh-cCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECC
Confidence 999999998874444444 788899999999999886 367888899999999999999887888888889999999999
Q ss_pred cccccccCchhccCCCCCcEEeccCCcCC
Q 037027 177 RNRLQGEIPRELSNLAELELMSLFDNELQ 205 (205)
Q Consensus 177 ~~~l~~~~~~~l~~~~~L~~l~l~~n~l~ 205 (205)
+|++++..|..+..+++|+.|++++|.++
T Consensus 506 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 534 (606)
T 3vq2_A 506 HNNLLFLDSSHYNQLYSLSTLDCSFNRIE 534 (606)
T ss_dssp SSCCSCEEGGGTTTCTTCCEEECTTSCCC
T ss_pred CCcCCCcCHHHccCCCcCCEEECCCCcCc
Confidence 99999877899999999999999999874
No 40
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.87 E-value=2.7e-21 Score=148.88 Aligned_cols=180 Identities=22% Similarity=0.262 Sum_probs=103.3
Q ss_pred ceEEEEEecCCcccccCCCCCCCCCCCcEEEeecCcceeecCccccCCCCccEEEecCcccccCCCccccCCCCccEEEc
Q 037027 23 HRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDL 102 (205)
Q Consensus 23 ~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 102 (205)
++++.|+++++.+....+..|+.+++|+.|++++|.+....+..+..+++|++|++.+|.+....+..+..+++|++|++
T Consensus 69 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 148 (390)
T 3o6n_A 69 RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSM 148 (390)
T ss_dssp CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred ccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEEC
Confidence 45666777766666555556666666666666666666545555566666666666666665333333455566666666
Q ss_pred ccccCCcccCcccccCCCCcceeeecccccccCC----------------------------------------------
Q 037027 103 SYNALSGEIPANICSNLPFLEYISLSQNMFHGGI---------------------------------------------- 136 (205)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~---------------------------------------------- 136 (205)
++|.+. .+....+..+++|+.|++++|.++...
T Consensus 149 ~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 227 (390)
T 3o6n_A 149 SNNNLE-RIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVE 227 (390)
T ss_dssp CSSCCC-BCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSS
T ss_pred CCCccC-ccChhhccCCCCCCEEECCCCcCCccccccccccceeecccccccccCCCCcceEEECCCCeeeecccccccc
Confidence 666554 333222244455555555544433210
Q ss_pred -------------CCCcCCCCcceEEEeecceeecccCccccccCCceEEEeecccccccCchhccCCCCCcEEeccCCc
Q 037027 137 -------------PSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFDNE 203 (205)
Q Consensus 137 -------------~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~L~~l~l~~n~ 203 (205)
...+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+++ ++..+..+++|+.|++++|+
T Consensus 228 L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~ 306 (390)
T 3o6n_A 228 LTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNH 306 (390)
T ss_dssp CCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSC
T ss_pred ccEEECCCCCCcccHHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCc
Confidence 1123445667777777777666666666667777777777776663 34444556666666666665
Q ss_pred C
Q 037027 204 L 204 (205)
Q Consensus 204 l 204 (205)
+
T Consensus 307 l 307 (390)
T 3o6n_A 307 L 307 (390)
T ss_dssp C
T ss_pred c
Confidence 4
No 41
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.87 E-value=1.1e-21 Score=158.82 Aligned_cols=180 Identities=21% Similarity=0.202 Sum_probs=88.2
Q ss_pred eEEEEEecCCcccccCCCCCCCCCCCcEEEeecCcceeecCc-cccCCCCccEEEecCcccccCCCccccCCCCccEEEc
Q 037027 24 RVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPS-ATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDL 102 (205)
Q Consensus 24 ~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 102 (205)
+++.|++++|.+.+..+..|..+++|+.|++++|.+....+. .+..+++|++|++.+|.+....+..+..+++|++|++
T Consensus 377 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 456 (606)
T 3t6q_A 377 HLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNL 456 (606)
T ss_dssp TCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEEC
Confidence 344444444444433344444444444444444444322221 2444444555555544444334444444555555555
Q ss_pred ccccCCcc-cC-cccccCCCCcceeeecccccccCCCCCcCCCCcceEEEeecceeecccCccccccCCceEEEeecccc
Q 037027 103 SYNALSGE-IP-ANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRL 180 (205)
Q Consensus 103 ~~~~~~~~-~~-~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l 180 (205)
++|.+.+. ++ ...+..+++|+.|++++|.+++..+..+..+++|+.|++++|.+.+..+..+..++.| ++++++|.+
T Consensus 457 ~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l 535 (606)
T 3t6q_A 457 QGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHI 535 (606)
T ss_dssp TTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCC
T ss_pred CCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcc
Confidence 55544321 11 1122445555555555555554444555555555555555555555555555555555 555555555
Q ss_pred cccCchhccCCCCCcEEeccCCcC
Q 037027 181 QGEIPRELSNLAELELMSLFDNEL 204 (205)
Q Consensus 181 ~~~~~~~l~~~~~L~~l~l~~n~l 204 (205)
++..+..+..+++|+.+++++|++
T Consensus 536 ~~~~~~~~~~l~~L~~L~l~~N~~ 559 (606)
T 3t6q_A 536 SIILPSLLPILSQQRTINLRQNPL 559 (606)
T ss_dssp CCCCGGGHHHHHTSSEEECTTCCE
T ss_pred cccCHhhcccCCCCCEEeCCCCCc
Confidence 555555555555666666666554
No 42
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.87 E-value=3.1e-21 Score=156.19 Aligned_cols=161 Identities=21% Similarity=0.202 Sum_probs=69.0
Q ss_pred CCCCCCCcEEEeecCcceeec--CccccCCCCccEEEecCcccccCCCccccCCCCccEEEcccccCCcccCcccccCCC
Q 037027 43 LGNLSSLQSLNLSFNRLSGSI--PSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLP 120 (205)
Q Consensus 43 ~~~~~~L~~L~l~~~~~~~~~--~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 120 (205)
++.+++|+.|++++|.+.... +..+..+++|++|++.+|.+....+..+..+++|++|++++|.+.+..+...+..++
T Consensus 346 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~ 425 (606)
T 3t6q_A 346 LENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLH 425 (606)
T ss_dssp TTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCT
T ss_pred hhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcc
Confidence 334444444444444443222 333444444444444444444333444444444444444444443222222223444
Q ss_pred CcceeeecccccccCCCCCcCCCCcceEEEeecceeecc---cCccccccCCceEEEeecccccccCchhccCCCCCcEE
Q 037027 121 FLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGA---IPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELELM 197 (205)
Q Consensus 121 ~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~---~~~~~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~L~~l 197 (205)
+|+.+++++|.+....+..+..+++|+.|++++|.+.+. .+..+..+++|++|++++|.+++..+..+..+++|+.|
T Consensus 426 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 505 (606)
T 3t6q_A 426 LLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHV 505 (606)
T ss_dssp TCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred cCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEE
Confidence 444444444444433344444444444444444444321 11223344444444444444443334444444444444
Q ss_pred eccCCc
Q 037027 198 SLFDNE 203 (205)
Q Consensus 198 ~l~~n~ 203 (205)
++++|+
T Consensus 506 ~Ls~N~ 511 (606)
T 3t6q_A 506 DLSHNR 511 (606)
T ss_dssp ECCSSC
T ss_pred ECCCCc
Confidence 444443
No 43
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.87 E-value=9.1e-22 Score=144.54 Aligned_cols=161 Identities=24% Similarity=0.193 Sum_probs=140.4
Q ss_pred cCCCceEEEEEecCCcccccCCCCCCCCCCCcEEEeecCcceeecCccccCCCCccEEEecCcccccCCCccccCCCCcc
Q 037027 19 DVHSHRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQ 98 (205)
Q Consensus 19 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 98 (205)
....++++.|++++|.+.+. +.+..+++|+.|++++|.+....+..+..+++|++|++.+|.+....+..+..+++|+
T Consensus 59 l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 136 (272)
T 3rfs_A 59 IQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLT 136 (272)
T ss_dssp GGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred cccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCC
Confidence 34567899999999998752 4688999999999999999976777788999999999999999876677788899999
Q ss_pred EEEcccccCCcccCcccccCCCCcceeeecccccccCCCCCcCCCCcceEEEeecceeecccCccccccCCceEEEeecc
Q 037027 99 DLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRN 178 (205)
Q Consensus 99 ~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~ 178 (205)
+|++++|.+. .++...+..+++|+.|++++|.+++..+..+..+++|+.|++++|.+.+..+..+..+++|+++++++|
T Consensus 137 ~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 215 (272)
T 3rfs_A 137 YLNLAHNQLQ-SLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 215 (272)
T ss_dssp EEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred EEECCCCccC-ccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCC
Confidence 9999999998 666665588999999999999998766677889999999999999998777777889999999999999
Q ss_pred cccc
Q 037027 179 RLQG 182 (205)
Q Consensus 179 ~l~~ 182 (205)
.+..
T Consensus 216 ~~~~ 219 (272)
T 3rfs_A 216 PWDC 219 (272)
T ss_dssp CBCC
T ss_pred Cccc
Confidence 8764
No 44
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.87 E-value=1.3e-21 Score=138.20 Aligned_cols=179 Identities=22% Similarity=0.246 Sum_probs=145.3
Q ss_pred CCCCCccceeeecC---------CCceEEEEEecCCcccccCCCCCCCCCCCcEEEeecCcceeecCccccCCCCccEEE
Q 037027 7 SSPVCNWTGVTCDV---------HSHRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVD 77 (205)
Q Consensus 7 ~~~~c~~~~~~~~~---------~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 77 (205)
....|.|.++.|.. ..++++.|+++++.+....+..|+.+++|+.|++.+|.+....+..+..+++|++|+
T Consensus 3 ~~C~C~~~~v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 82 (208)
T 2o6s_A 3 SRCSCSGTTVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLN 82 (208)
T ss_dssp TTCEEETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCEECCCEEEecCCCccCCCCCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEE
Confidence 44568888888843 234688999999998866677788999999999999999866666678899999999
Q ss_pred ecCcccccCCCccccCCCCccEEEcccccCCcccCcccccCCCCcceeeecccccccCCCCCcCCCCcceEEEeecceee
Q 037027 78 LRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFS 157 (205)
Q Consensus 78 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~ 157 (205)
+.+|.++...+..+..+++|++|++++|.+. .++...+..+++|+.|++++|.+++..+..+..+++|+.|++++|.+.
T Consensus 83 Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 161 (208)
T 2o6s_A 83 LSTNQLQSLPNGVFDKLTQLKELALNTNQLQ-SLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD 161 (208)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred CCCCcCCccCHhHhcCccCCCEEEcCCCcCc-ccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee
Confidence 9999988666666788899999999999987 566655578899999999999998666666888999999999998664
Q ss_pred cccCccccccCCceEEEeecccccccCchhccCCCC
Q 037027 158 GAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAE 193 (205)
Q Consensus 158 ~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~ 193 (205)
..+++++.+++..|.+++.+|..++.++.
T Consensus 162 -------~~~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 162 -------CTCPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp -------CCTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred -------cCCCCHHHHHHHHHhCCceeeccCccccC
Confidence 34678888888999998888887776653
No 45
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.87 E-value=3.9e-21 Score=144.98 Aligned_cols=184 Identities=20% Similarity=0.188 Sum_probs=128.0
Q ss_pred CCCceEEEEEecCCcccccCCCCCCCCCCCcEEEeecCcceee---------------------cCccccCCCCccEEEe
Q 037027 20 VHSHRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGS---------------------IPSATFITHTLKYVDL 78 (205)
Q Consensus 20 ~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~---------------------~~~~~~~l~~L~~L~l 78 (205)
...++++.|++++|.+.+..|..|+++++|+.|++++|.+... .+..+..+++|++|++
T Consensus 75 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l 154 (332)
T 2ft3_A 75 KGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEM 154 (332)
T ss_dssp TTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCCTTCCEEECCSSCCCCCCSGGGSSCSSCCEEEC
T ss_pred hCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCccccccCCEEECCCCccCccCHhHhCCCccCCEEEC
Confidence 3456777888888877766677777777777777777766521 2223444555555555
Q ss_pred cCccccc--CCCccccCC--------------------CCccEEEcccccCCcccCcccccCCCCcceeeecccccccCC
Q 037027 79 RGNQLSG--AFPSFIFNK--------------------SSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGI 136 (205)
Q Consensus 79 ~~~~~~~--~~~~~l~~l--------------------~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~ 136 (205)
.+|.+.. ..+..+..+ .+|++|++++|.+. .++...+..+++|+.|++++|.+++..
T Consensus 155 ~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~-~~~~~~l~~l~~L~~L~L~~N~l~~~~ 233 (332)
T 2ft3_A 155 GGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQIRMIE 233 (332)
T ss_dssp CSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCC-CCCTTSSTTCTTCSCCBCCSSCCCCCC
T ss_pred CCCccccCCCCcccccCCccCEEECcCCCCCccCccccCCCCEEECCCCcCC-ccCHHHhcCCCCCCEEECCCCcCCcCC
Confidence 5555431 222222211 23444444444444 233233467889999999999998776
Q ss_pred CCCcCCCCcceEEEeecceeecccCccccccCCceEEEeecccccccCchhccC------CCCCcEEeccCCcCC
Q 037027 137 PSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSN------LAELELMSLFDNELQ 205 (205)
Q Consensus 137 ~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~l~~------~~~L~~l~l~~n~l~ 205 (205)
+..+..+++|+.|++++|.+. .+|..+..+++|++|++++|.+++..+..+.. .+.++.+++.+|+++
T Consensus 234 ~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~ 307 (332)
T 2ft3_A 234 NGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVP 307 (332)
T ss_dssp TTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSC
T ss_pred hhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCccc
Confidence 778899999999999999988 67777889999999999999999766666654 367999999999863
No 46
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.86 E-value=2.2e-21 Score=155.90 Aligned_cols=183 Identities=20% Similarity=0.225 Sum_probs=146.8
Q ss_pred CCceEEEEEecCCcccccC--CCCCCCCCCCcEEEeecCcceeecCccccCCCCccEEEecCcccccCCC-ccccCCCCc
Q 037027 21 HSHRVTVFNVSGLNLTGTI--PSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFP-SFIFNKSSL 97 (205)
Q Consensus 21 ~~~~l~~l~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L 97 (205)
..++++.|+++++.+.+.. +..+..+++|+.|++++|.+....+. +..+++|++|++.+|.+....+ ..+..+++|
T Consensus 345 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L 423 (570)
T 2z63_A 345 DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL 423 (570)
T ss_dssp BCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTC
T ss_pred cCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCC
Confidence 4456777777777765432 45566778888888888887744333 7788889999999888875444 456778899
Q ss_pred cEEEcccccCCcccCcccccCCCCcceeeecccccc-cCCCCCcCCCCcceEEEeecceeecccCccccccCCceEEEee
Q 037027 98 QDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFH-GGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLV 176 (205)
Q Consensus 98 ~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~-~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~ 176 (205)
++|++++|.+.+..+ ..+..+++|+.|++++|.++ +..|..+..+++|+.|++++|.+.+..|..+..+++|++|+++
T Consensus 424 ~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 502 (570)
T 2z63_A 424 IYLDISHTHTRVAFN-GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMA 502 (570)
T ss_dssp CEEECTTSCCEECCT-TTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred CEEeCcCCcccccch-hhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCC
Confidence 999999998874333 34478899999999999987 3577888999999999999999987778888899999999999
Q ss_pred cccccccCchhccCCCCCcEEeccCCcCC
Q 037027 177 RNRLQGEIPRELSNLAELELMSLFDNELQ 205 (205)
Q Consensus 177 ~~~l~~~~~~~l~~~~~L~~l~l~~n~l~ 205 (205)
+|.+++..+..+..+++|+.|++++|+++
T Consensus 503 ~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 531 (570)
T 2z63_A 503 SNQLKSVPDGIFDRLTSLQKIWLHTNPWD 531 (570)
T ss_dssp SSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCcCCCCCHHHhhcccCCcEEEecCCccc
Confidence 99999777788999999999999999874
No 47
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.86 E-value=5.5e-22 Score=148.44 Aligned_cols=178 Identities=24% Similarity=0.280 Sum_probs=104.6
Q ss_pred ceEEEEEecCCcccccCCCCC--CCCCCCcEEEeecCcce----------------------------eecCccccCCCC
Q 037027 23 HRVTVFNVSGLNLTGTIPSQL--GNLSSLQSLNLSFNRLS----------------------------GSIPSATFITHT 72 (205)
Q Consensus 23 ~~l~~l~l~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~----------------------------~~~~~~~~~l~~ 72 (205)
++++.|++++|.+.+..|..+ +.+++|+.|++++|.+. ...+..+..+++
T Consensus 95 ~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~ 174 (312)
T 1wwl_A 95 SGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPA 174 (312)
T ss_dssp SCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSS
T ss_pred CCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCC
Confidence 355555555555554444443 45555555555555554 333344444555
Q ss_pred ccEEEecCcccccC--CCccc--cCCCCccEEEcccccCCc--ccCcccccCCCCcceeeecccccccCCC-CCcCCCCc
Q 037027 73 LKYVDLRGNQLSGA--FPSFI--FNKSSLQDLDLSYNALSG--EIPANICSNLPFLEYISLSQNMFHGGIP-SALSKCTY 145 (205)
Q Consensus 73 L~~L~l~~~~~~~~--~~~~l--~~l~~L~~L~l~~~~~~~--~~~~~~~~~~~~L~~l~l~~~~~~~~~~-~~~~~~~~ 145 (205)
|++|++++|.+... .+..+ ..+++|++|++++|.+.+ .++...+..+++|+.|++++|.+++..+ ..+..+++
T Consensus 175 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~ 254 (312)
T 1wwl_A 175 LSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQ 254 (312)
T ss_dssp CCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTT
T ss_pred CCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCC
Confidence 55555555543211 11111 344555555555555541 1122233455677777777777765443 44556778
Q ss_pred ceEEEeecceeecccCccccccCCceEEEeecccccccCchhccCCCCCcEEeccCCcCC
Q 037027 146 LQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFDNELQ 205 (205)
Q Consensus 146 L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~L~~l~l~~n~l~ 205 (205)
|+.|++++|.+. .+|..+. ++|++|++++|++++. |. +..+++|++|++++|+++
T Consensus 255 L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~ 309 (312)
T 1wwl_A 255 LNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFL 309 (312)
T ss_dssp CCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTT
T ss_pred CCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCC
Confidence 888888888876 5555554 7888888888888854 54 788888888888888874
No 48
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.86 E-value=5.7e-22 Score=148.37 Aligned_cols=180 Identities=21% Similarity=0.235 Sum_probs=130.7
Q ss_pred eEEEEEecCCccc-ccCCCCCC-------CCCCCcEEEeecCcceeecCccc--cCCCCccEEEecCcccccCCCccccC
Q 037027 24 RVTVFNVSGLNLT-GTIPSQLG-------NLSSLQSLNLSFNRLSGSIPSAT--FITHTLKYVDLRGNQLSGAFPSFIFN 93 (205)
Q Consensus 24 ~l~~l~l~~~~~~-~~~~~~~~-------~~~~L~~L~l~~~~~~~~~~~~~--~~l~~L~~L~l~~~~~~~~~~~~l~~ 93 (205)
.++.|+++++.+. ...+..+. ++++|+.|++++|.+.+..+..+ ..+++|++|++++|.++.. |..+..
T Consensus 64 ~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~ 142 (312)
T 1wwl_A 64 IIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAE 142 (312)
T ss_dssp HHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHH
T ss_pred HHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHH
Confidence 3777888888874 34555444 68999999999999987677765 8899999999999999855 666665
Q ss_pred C-----CCccEEEcccccCCcccCcccccCCCCcceeeecccccccC--CCCC--cCCCCcceEEEeecceeec---ccC
Q 037027 94 K-----SSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGG--IPSA--LSKCTYLQILGLSFNDFSG---AIP 161 (205)
Q Consensus 94 l-----~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~--~~~~--~~~~~~L~~l~l~~~~~~~---~~~ 161 (205)
+ ++|++|++++|.+. .++...+..+++|+.|++++|.+.+. .+.. +..+++|+.|++++|.+.+ ...
T Consensus 143 l~~~~~~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 221 (312)
T 1wwl_A 143 LQQWLKPGLKVLSIAQAHSL-NFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCS 221 (312)
T ss_dssp HHTTCCTTCCEEEEESCSCC-CCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHH
T ss_pred HHHhhcCCCcEEEeeCCCCc-cchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHH
Confidence 5 88999999999987 45544447888999999999886532 1222 2677888888888887762 112
Q ss_pred ccccccCCceEEEeecccccccCc-hhccCCCCCcEEeccCCcCC
Q 037027 162 KEIGNVTKLKELYLVRNRLQGEIP-RELSNLAELELMSLFDNELQ 205 (205)
Q Consensus 162 ~~~~~~~~L~~l~l~~~~l~~~~~-~~l~~~~~L~~l~l~~n~l~ 205 (205)
..+..+++|++|++++|.+++..+ ..+..+++|+.|++++|.++
T Consensus 222 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~ 266 (312)
T 1wwl_A 222 ALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK 266 (312)
T ss_dssp HHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS
T ss_pred HHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC
Confidence 233456778888888887775543 44556677777777777653
No 49
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.86 E-value=7.5e-21 Score=153.82 Aligned_cols=181 Identities=22% Similarity=0.256 Sum_probs=123.5
Q ss_pred CceEEEEEecCCcccccCCCCCCCCCCCcEEEeecCcceeecCccccCCCCccEEEecCcccccCCCccccCCCCccEEE
Q 037027 22 SHRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLD 101 (205)
Q Consensus 22 ~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 101 (205)
.++++.|+++++.+.+..+..|+.+++|+.|++++|.+....+..|..+++|++|++++|.+....+..+..+++|++|+
T Consensus 74 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~ 153 (597)
T 3oja_B 74 FRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLS 153 (597)
T ss_dssp CCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEE
Confidence 35688888888888777777788888888888888888766666677788888888888877744444456777777777
Q ss_pred cccccCCcccCcccccCCCCcceeeecccccccCC---------------------------------------------
Q 037027 102 LSYNALSGEIPANICSNLPFLEYISLSQNMFHGGI--------------------------------------------- 136 (205)
Q Consensus 102 l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~--------------------------------------------- 136 (205)
+++|.+. .++...+..+++|+.|++++|.+++..
T Consensus 154 Ls~N~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~ 232 (597)
T 3oja_B 154 MSNNNLE-RIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNV 232 (597)
T ss_dssp CCSSCCC-BCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCS
T ss_pred eeCCcCC-CCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccCC
Confidence 7777776 333333355666666666666544211
Q ss_pred --------------CCCcCCCCcceEEEeecceeecccCccccccCCceEEEeecccccccCchhccCCCCCcEEeccCC
Q 037027 137 --------------PSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFDN 202 (205)
Q Consensus 137 --------------~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~L~~l~l~~n 202 (205)
+..+..+++|+.|++++|.+.+..|..+..+++|++|++++|.+++ ++..+..+++|+.|++++|
T Consensus 233 ~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N 311 (597)
T 3oja_B 233 ELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHN 311 (597)
T ss_dssp CCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSS
T ss_pred CCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCC
Confidence 1224455677777777777776667777777777777777777763 3445555666666666666
Q ss_pred cC
Q 037027 203 EL 204 (205)
Q Consensus 203 ~l 204 (205)
.+
T Consensus 312 ~l 313 (597)
T 3oja_B 312 HL 313 (597)
T ss_dssp CC
T ss_pred CC
Confidence 55
No 50
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.86 E-value=5.5e-21 Score=160.05 Aligned_cols=192 Identities=20% Similarity=0.171 Sum_probs=162.4
Q ss_pred CccceeeecCCCceEEEEEecCCcccccCCCCCCCCCCCcEEEeecCcce-eecCccccCCCCccEEEecCcccccCCCc
Q 037027 11 CNWTGVTCDVHSHRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLS-GSIPSATFITHTLKYVDLRGNQLSGAFPS 89 (205)
Q Consensus 11 c~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 89 (205)
+.+..+.+ .+++++.|++++|.+.+..+..|+++++|+.|++++|... ...+.+|..+++|++|++++|.+....|.
T Consensus 14 ~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~ 91 (844)
T 3j0a_A 14 CNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPD 91 (844)
T ss_dssp CCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTT
T ss_pred CCCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHh
Confidence 34444444 5568999999999999888999999999999999999543 34478899999999999999999877899
Q ss_pred cccCCCCccEEEcccccCCcccCc-ccccCCCCcceeeecccccccCCC-CCcCCCCcceEEEeecceeecccCcccccc
Q 037027 90 FIFNKSSLQDLDLSYNALSGEIPA-NICSNLPFLEYISLSQNMFHGGIP-SALSKCTYLQILGLSFNDFSGAIPKEIGNV 167 (205)
Q Consensus 90 ~l~~l~~L~~L~l~~~~~~~~~~~-~~~~~~~~L~~l~l~~~~~~~~~~-~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~ 167 (205)
.+..+.+|++|++++|.+.+..+. ..+..+++|+.|++++|.+++..+ ..+..+++|+.|++++|.+.+..+..+..+
T Consensus 92 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l 171 (844)
T 3j0a_A 92 AFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPL 171 (844)
T ss_dssp SSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHH
T ss_pred HccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccc
Confidence 999999999999999999754443 335889999999999999986544 578999999999999999987778787776
Q ss_pred --CCceEEEeecccccccCchhccCCCC------CcEEeccCCcC
Q 037027 168 --TKLKELYLVRNRLQGEIPRELSNLAE------LELMSLFDNEL 204 (205)
Q Consensus 168 --~~L~~l~l~~~~l~~~~~~~l~~~~~------L~~l~l~~n~l 204 (205)
++|++|+++.|.+.+..+..+..+++ |+.|++++|.+
T Consensus 172 ~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l 216 (844)
T 3j0a_A 172 QGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGW 216 (844)
T ss_dssp HHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCS
T ss_pred cCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcC
Confidence 89999999999998777777776665 99999999864
No 51
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.85 E-value=3e-20 Score=152.28 Aligned_cols=180 Identities=21% Similarity=0.198 Sum_probs=102.0
Q ss_pred eEEEEEecCCcccccCCCCCCCCCCCcEEEeecCcceeecC-ccccCCCCccEEEecCccccc-----------------
Q 037027 24 RVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIP-SATFITHTLKYVDLRGNQLSG----------------- 85 (205)
Q Consensus 24 ~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~----------------- 85 (205)
.++.|++++|.+.+..|..|+.+++|+.|++++|.+....+ ..+..+++|++|++++|.+..
T Consensus 382 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l 461 (680)
T 1ziw_A 382 PLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLML 461 (680)
T ss_dssp CCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEEC
T ss_pred cCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchh
Confidence 45556666666555555555555666666666555543222 344444555555554444332
Q ss_pred ---------CCCccccCCCCccEEEcccccCCcccCcccccCCCCcceeeecccccccCC--------CCCcCCCCcceE
Q 037027 86 ---------AFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGI--------PSALSKCTYLQI 148 (205)
Q Consensus 86 ---------~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~--------~~~~~~~~~L~~ 148 (205)
..|..+..+.+|++|++++|.+. .++...+..+++|+.|++++|.++... ...+..+++|+.
T Consensus 462 ~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~ 540 (680)
T 1ziw_A 462 RRVALKNVDSSPSPFQPLRNLTILDLSNNNIA-NINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHI 540 (680)
T ss_dssp TTSCCBCTTCSSCTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCE
T ss_pred ccccccccccCCcccccCCCCCEEECCCCCCC-cCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCE
Confidence 23444555666666666666665 444444456666666666666655321 112455666666
Q ss_pred EEeecceeecccCccccccCCceEEEeecccccccCchhccCCCCCcEEeccCCcC
Q 037027 149 LGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFDNEL 204 (205)
Q Consensus 149 l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~L~~l~l~~n~l 204 (205)
|++++|.+....+..+..+++|+++++++|.++...+..|..+++|+.|++++|.+
T Consensus 541 L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l 596 (680)
T 1ziw_A 541 LNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLI 596 (680)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred EECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcC
Confidence 66666666544344556666677777766666655555566666666666666655
No 52
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.85 E-value=1.1e-20 Score=154.94 Aligned_cols=180 Identities=24% Similarity=0.216 Sum_probs=151.3
Q ss_pred CceEEEEEecCCcccccCCCCCCCCCCCcEEEeecCcceeecCccccCCCCccEEEecCcccccCCCccccCCCCccEEE
Q 037027 22 SHRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLD 101 (205)
Q Consensus 22 ~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 101 (205)
+++++.|+++++.+.+..+..|+++++|+.|++++|.+....+.++..+++|++|++++|.+....+..+..+.+|++|+
T Consensus 24 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~ 103 (680)
T 1ziw_A 24 PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELH 103 (680)
T ss_dssp CTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEE
T ss_pred CCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEE
Confidence 35899999999999877777899999999999999999877788899999999999999999855555788999999999
Q ss_pred cccccCCcccCcccccCCCCcceeeecccccccCCCCCcCCCCcceEEEeecceeecccCcccc--ccCCceEEEeeccc
Q 037027 102 LSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIG--NVTKLKELYLVRNR 179 (205)
Q Consensus 102 l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~--~~~~L~~l~l~~~~ 179 (205)
+++|.+. .++...+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.+..+..+. .+++|++|++++|.
T Consensus 104 L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~ 182 (680)
T 1ziw_A 104 LMSNSIQ-KIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQ 182 (680)
T ss_dssp CCSSCCC-CCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCC
T ss_pred CCCCccC-ccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCc
Confidence 9999997 56655558899999999999999877778889999999999999998766555443 45899999999999
Q ss_pred ccccCchhccCCCCCcEEeccCC
Q 037027 180 LQGEIPRELSNLAELELMSLFDN 202 (205)
Q Consensus 180 l~~~~~~~l~~~~~L~~l~l~~n 202 (205)
+++..+..+..+++|+.+++.++
T Consensus 183 l~~~~~~~~~~l~~L~~L~l~~~ 205 (680)
T 1ziw_A 183 IKEFSPGCFHAIGRLFGLFLNNV 205 (680)
T ss_dssp CCCBCTTGGGGSSEECEEECTTC
T ss_pred ccccChhhhhhhhhhhhhhcccc
Confidence 99877877776655555544443
No 53
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.84 E-value=2.5e-20 Score=134.32 Aligned_cols=177 Identities=20% Similarity=0.169 Sum_probs=147.7
Q ss_pred CCCceEEEEEecCCc-ccccCCCCCCCCCCCcEEEeec-CcceeecCccccCCCCccEEEecCcccccCCCccccCCCCc
Q 037027 20 VHSHRVTVFNVSGLN-LTGTIPSQLGNLSSLQSLNLSF-NRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSL 97 (205)
Q Consensus 20 ~~~~~l~~l~l~~~~-~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L 97 (205)
...++++.|+++++. +....+..|+++++|+.|++++ |.+....+..|..+++|++|++.+|.++. .|. +..+.+|
T Consensus 52 ~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L 129 (239)
T 2xwt_C 52 SNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM-FPD-LTKVYST 129 (239)
T ss_dssp TTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCS-CCC-CTTCCBC
T ss_pred cCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc-ccc-ccccccc
Confidence 356789999999997 8766677889999999999998 99987777789999999999999999884 555 7777778
Q ss_pred c---EEEcccc-cCCcccCcccccCCCCcc-eeeecccccccCCCCCcCCCCcceEEEeecce-eecccCcccccc-CCc
Q 037027 98 Q---DLDLSYN-ALSGEIPANICSNLPFLE-YISLSQNMFHGGIPSALSKCTYLQILGLSFND-FSGAIPKEIGNV-TKL 170 (205)
Q Consensus 98 ~---~L~l~~~-~~~~~~~~~~~~~~~~L~-~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~-~~~~~~~~~~~~-~~L 170 (205)
+ +|++++| .+. .++...+..+++|+ .+++++|.++...+..+.. ++|+.|++++|. +.+..+..+..+ ++|
T Consensus 130 ~~L~~L~l~~N~~l~-~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L 207 (239)
T 2xwt_C 130 DIFFILEITDNPYMT-SIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGP 207 (239)
T ss_dssp CSEEEEEEESCTTCC-EECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCC
T ss_pred ccccEEECCCCcchh-hcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCC
Confidence 7 9999999 887 67766668899999 9999999998544445555 899999999995 876767788888 999
Q ss_pred eEEEeecccccccCchhccCCCCCcEEeccCCc
Q 037027 171 KELYLVRNRLQGEIPRELSNLAELELMSLFDNE 203 (205)
Q Consensus 171 ~~l~l~~~~l~~~~~~~l~~~~~L~~l~l~~n~ 203 (205)
+++++++|++++ +|.. .+++|+.|++.++.
T Consensus 208 ~~L~l~~N~l~~-l~~~--~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 208 SLLDVSQTSVTA-LPSK--GLEHLKELIARNTW 237 (239)
T ss_dssp SEEECTTCCCCC-CCCT--TCTTCSEEECTTC-
T ss_pred cEEECCCCcccc-CChh--HhccCceeeccCcc
Confidence 999999999984 4443 67889999998763
No 54
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.84 E-value=1.7e-20 Score=140.12 Aligned_cols=169 Identities=24% Similarity=0.309 Sum_probs=118.6
Q ss_pred CCceEEEEEecCCcccccCCCCCCCCCCCcEEEeecCcceeecCccccCCCCccEEEecCcccccCCCccccCCCCccEE
Q 037027 21 HSHRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDL 100 (205)
Q Consensus 21 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L 100 (205)
..++++.|++++|.+....+ +..+++|+.|++++|.+... ..+..+++|++|++++|.+.. .+ .+..+++|++|
T Consensus 61 ~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L 134 (308)
T 1h6u_A 61 YLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDLTSTQITD-VT-PLAGLSNLQVL 134 (308)
T ss_dssp GCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEEECTTSCCCC-CG-GGTTCTTCCEE
T ss_pred ccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCCEEECCCCCCCC-ch-hhcCCCCCCEE
Confidence 45567777777777664333 67777777777777777632 356677778888887777763 22 26677778888
Q ss_pred EcccccCCcccCcccccCCCCcceeeecccccccCCCCCcCCCCcceEEEeecceeecccCccccccCCceEEEeecccc
Q 037027 101 DLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRL 180 (205)
Q Consensus 101 ~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l 180 (205)
++++|.+. .++. +..+++|+.|++++|.+++. +. +..+++|+.|++++|.+.+..+ +..+++|++|++++|.+
T Consensus 135 ~l~~n~l~-~~~~--l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l 207 (308)
T 1h6u_A 135 YLDLNQIT-NISP--LAGLTNLQYLSIGNAQVSDL-TP-LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQI 207 (308)
T ss_dssp ECCSSCCC-CCGG--GGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCC
T ss_pred ECCCCccC-cCcc--ccCCCCccEEEccCCcCCCC-hh-hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCcc
Confidence 88888776 3333 35677788888888877643 22 6777888888888887764333 66778888888888888
Q ss_pred cccCchhccCCCCCcEEeccCCcC
Q 037027 181 QGEIPRELSNLAELELMSLFDNEL 204 (205)
Q Consensus 181 ~~~~~~~l~~~~~L~~l~l~~n~l 204 (205)
.+.. .+..+++|+.|++++|++
T Consensus 208 ~~~~--~l~~l~~L~~L~l~~N~i 229 (308)
T 1h6u_A 208 SDVS--PLANTSNLFIVTLTNQTI 229 (308)
T ss_dssp CBCG--GGTTCTTCCEEEEEEEEE
T ss_pred Cccc--cccCCCCCCEEEccCCee
Confidence 7443 377888888888888865
No 55
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.84 E-value=4.5e-21 Score=143.81 Aligned_cols=176 Identities=24% Similarity=0.204 Sum_probs=106.1
Q ss_pred eEEEEEecCCcccccCCCCCCCCCCCcEEEeecCcceeecCccccCCCCccEEEecCcc---------------------
Q 037027 24 RVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQ--------------------- 82 (205)
Q Consensus 24 ~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~--------------------- 82 (205)
+++.|+++++.+....|..|+++++|+.|++++|.+....+ +..+++|++|++++|.
T Consensus 35 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~~~~~L~~L~l~~n~l~ 112 (317)
T 3o53_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNIS 112 (317)
T ss_dssp GCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCS
T ss_pred CCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccccccCCCCcCEEECCCCccC
Confidence 45555555555554444445555555555555555542221 4444445444444444
Q ss_pred -------------------cccCCCccccCCCCccEEEcccccCCcccCcccccCCCCcceeeecccccccCCCCCcCCC
Q 037027 83 -------------------LSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKC 143 (205)
Q Consensus 83 -------------------~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~ 143 (205)
++...+..+..+++|++|++++|.+.+..+..+...++.|+.|++++|.++.. + ....+
T Consensus 113 ~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~-~~~~l 190 (317)
T 3o53_A 113 RVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K-GQVVF 190 (317)
T ss_dssp EEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E-CCCCC
T ss_pred CcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-c-ccccc
Confidence 33223334444566666666666665323333334566777777777776543 2 22346
Q ss_pred CcceEEEeecceeecccCccccccCCceEEEeecccccccCchhccCCCCCcEEeccCCcCC
Q 037027 144 TYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFDNELQ 205 (205)
Q Consensus 144 ~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~L~~l~l~~n~l~ 205 (205)
++|+.|++++|.+.+. +..+..+++|++|++++|.++ .+|..+..+++|+.|++++|+++
T Consensus 191 ~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 191 AKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp TTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCB
T ss_pred ccCCEEECCCCcCCcc-hhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCcc
Confidence 7788888888877643 444777888888888888888 55777788888888888888763
No 56
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.84 E-value=3.4e-21 Score=156.83 Aligned_cols=179 Identities=18% Similarity=0.304 Sum_probs=122.0
Q ss_pred CCceEEEEEecCCccccc-----------------CCCCCC--CCCCCcEEEeecCcceeecCccccCCCCccEEEecCc
Q 037027 21 HSHRVTVFNVSGLNLTGT-----------------IPSQLG--NLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGN 81 (205)
Q Consensus 21 ~~~~l~~l~l~~~~~~~~-----------------~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 81 (205)
..++++.|++++|.+++. +|+.++ ++++|+.|++++|.+....+..+..+++|++|++.+|
T Consensus 204 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n 283 (636)
T 4eco_A 204 RLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACN 283 (636)
T ss_dssp GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTC
T ss_pred cccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCC
Confidence 456788888888888764 787777 8888888888888877677777888888888888888
Q ss_pred c-ccc-CCCccccCC------CCccEEEcccccCCcccCc--ccccCCCCcceeeecccccccCCCCCcCCCCcceEEEe
Q 037027 82 Q-LSG-AFPSFIFNK------SSLQDLDLSYNALSGEIPA--NICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGL 151 (205)
Q Consensus 82 ~-~~~-~~~~~l~~l------~~L~~L~l~~~~~~~~~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l 151 (205)
. ++. ..|..+..+ ++|++|++++|.+. .++. .+ ..+++|+.|++++|.+++.+| .+..+++|+.|++
T Consensus 284 ~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l-~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L 360 (636)
T 4eco_A 284 RGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSL-QKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNL 360 (636)
T ss_dssp TTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHH-TTCTTCCEEECCSCCCEEECC-CCEEEEEESEEEC
T ss_pred CCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhh-ccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEEC
Confidence 7 654 455555444 67777777777776 6665 34 667777777777777765555 6666666777777
Q ss_pred ecceeecccCccccccCC-ceEEEeecccccccCchhccCCC--CCcEEeccCCcC
Q 037027 152 SFNDFSGAIPKEIGNVTK-LKELYLVRNRLQGEIPRELSNLA--ELELMSLFDNEL 204 (205)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~-L~~l~l~~~~l~~~~~~~l~~~~--~L~~l~l~~n~l 204 (205)
++|.+. .+|..+..+++ |++|++++|.++ .+|..+...+ +|+.|++++|.+
T Consensus 361 ~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l 414 (636)
T 4eco_A 361 AYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEI 414 (636)
T ss_dssp CSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCT
T ss_pred CCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcC
Confidence 776666 45555666666 666666666665 4455444332 555555555543
No 57
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.84 E-value=2.3e-21 Score=144.95 Aligned_cols=177 Identities=24% Similarity=0.306 Sum_probs=109.8
Q ss_pred eEEEEEecCCcccccCCCCC--CCCCCCcEEEeecCcceeecC----ccccCCCCccEEEecCcccccCCCccccCCCCc
Q 037027 24 RVTVFNVSGLNLTGTIPSQL--GNLSSLQSLNLSFNRLSGSIP----SATFITHTLKYVDLRGNQLSGAFPSFIFNKSSL 97 (205)
Q Consensus 24 ~l~~l~l~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~----~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L 97 (205)
+++.|++++|.+.+..|..+ +.+++|+.|++++|.+....+ ..+..+++|++|++++|.+....+..+..+++|
T Consensus 92 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L 171 (310)
T 4glp_A 92 RLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPAL 171 (310)
T ss_dssp CCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTC
T ss_pred ceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCC
Confidence 47788888888877777766 777788888888877764222 233456777777777777765556666667777
Q ss_pred cEEEcccccCCc---------------------------ccCcc---cccCCCCcceeeecccccccCCCCCcCCC---C
Q 037027 98 QDLDLSYNALSG---------------------------EIPAN---ICSNLPFLEYISLSQNMFHGGIPSALSKC---T 144 (205)
Q Consensus 98 ~~L~l~~~~~~~---------------------------~~~~~---~~~~~~~L~~l~l~~~~~~~~~~~~~~~~---~ 144 (205)
++|++++|.+.+ .++.. .+..+++|++|++++|.+++..|+.+..+ +
T Consensus 172 ~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~ 251 (310)
T 4glp_A 172 TSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSS 251 (310)
T ss_dssp CEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCT
T ss_pred CEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcC
Confidence 777777776432 11110 11234556666666666654445444444 4
Q ss_pred cceEEEeecceeecccCccccccCCceEEEeecccccccCchhccCCCCCcEEeccCCcCC
Q 037027 145 YLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFDNELQ 205 (205)
Q Consensus 145 ~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~L~~l~l~~n~l~ 205 (205)
+|+.|++++|.+. .+|..+ .++|++|++++|++++. |. +..+++|+.|++++|+++
T Consensus 252 ~L~~L~Ls~N~l~-~lp~~~--~~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 252 ALNSLNLSFAGLE-QVPKGL--PAKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFL 307 (310)
T ss_dssp TCCCEECCSSCCC-SCCSCC--CSCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTS
T ss_pred cCCEEECCCCCCC-chhhhh--cCCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCC
Confidence 6666666666665 344443 25677777777766632 22 556677777777777663
No 58
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.84 E-value=1.5e-20 Score=149.70 Aligned_cols=159 Identities=25% Similarity=0.299 Sum_probs=115.2
Q ss_pred CCCCCCcEEEeecCcceeecCccccCCCCccEEEecCccccc--CCCccccCCCCccEEEcccccCCcccCcccccCCCC
Q 037027 44 GNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSG--AFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPF 121 (205)
Q Consensus 44 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 121 (205)
+.+++|+.|++++|.+.+..+..+..+++|++|++.+|.+.. ..+..+..+++|++|++++|.+.+.++...+..++.
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~ 400 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKS 400 (520)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTT
T ss_pred hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCcc
Confidence 456677777777777765566667777777777777777663 233456677777778887777764366554566777
Q ss_pred cceeeecccccccCCCCCcCCCCcceEEEeecceeecccCccccccCCceEEEeecccccccCchhccCCCCCcEEeccC
Q 037027 122 LEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFD 201 (205)
Q Consensus 122 L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~L~~l~l~~ 201 (205)
|+.+++++|.+++..+..+. ++|+.|++++|.+. .+|..+..+++|++|++++|++++..+..+..+++|+.|++++
T Consensus 401 L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~ 477 (520)
T 2z7x_B 401 LLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHT 477 (520)
T ss_dssp CCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcC
Confidence 88888888877655444443 67888888888877 5666666888999999999998843334488889999999999
Q ss_pred CcCC
Q 037027 202 NELQ 205 (205)
Q Consensus 202 n~l~ 205 (205)
|+++
T Consensus 478 N~~~ 481 (520)
T 2z7x_B 478 NPWD 481 (520)
T ss_dssp SCBC
T ss_pred CCCc
Confidence 9874
No 59
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.84 E-value=1.7e-20 Score=150.77 Aligned_cols=179 Identities=20% Similarity=0.170 Sum_probs=157.3
Q ss_pred CceEEEEEecCCcccccCCCCCCCCCCCcEEEeecCcceeecCccccCCCCccEEEecCcccccCCCccccCCCCccEEE
Q 037027 22 SHRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLD 101 (205)
Q Consensus 22 ~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 101 (205)
.+.++.|+++++.+....+..|+++++|+.|++++|.+....+.+|..+++|++|++.+|.+....+..+..+.+|++|+
T Consensus 27 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (570)
T 2z63_A 27 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 106 (570)
T ss_dssp CSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred cccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccc
Confidence 45799999999999877888899999999999999999877778899999999999999999877778889999999999
Q ss_pred cccccCCcccCcccccCCCCcceeeeccccccc-CCCCCcCCCCcceEEEeecceeecccCccccccCCc----eEEEee
Q 037027 102 LSYNALSGEIPANICSNLPFLEYISLSQNMFHG-GIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKL----KELYLV 176 (205)
Q Consensus 102 l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~-~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L----~~l~l~ 176 (205)
+++|.+. .++...+..+++|++|++++|.++. .+|..+..+++|+.|++++|.+.+..+..+..+++| .+++++
T Consensus 107 L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~ 185 (570)
T 2z63_A 107 AVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLS 185 (570)
T ss_dssp CTTSCCC-CSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECT
T ss_pred ccccccc-cCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccC
Confidence 9999997 5555445889999999999999876 358889999999999999999987777778888888 899999
Q ss_pred cccccccCchhccCCCCCcEEeccCC
Q 037027 177 RNRLQGEIPRELSNLAELELMSLFDN 202 (205)
Q Consensus 177 ~~~l~~~~~~~l~~~~~L~~l~l~~n 202 (205)
+|.+++..+..+... +|+.+++++|
T Consensus 186 ~n~l~~~~~~~~~~~-~L~~L~l~~n 210 (570)
T 2z63_A 186 LNPMNFIQPGAFKEI-RLHKLTLRNN 210 (570)
T ss_dssp TCCCCEECTTTTTTC-EEEEEEEESC
T ss_pred CCCceecCHHHhccC-cceeEecccc
Confidence 999997777777766 7999999887
No 60
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.84 E-value=3e-20 Score=149.32 Aligned_cols=159 Identities=26% Similarity=0.340 Sum_probs=120.9
Q ss_pred CCCCCCcEEEeecCcceeecCccccCCCCccEEEecCcccccC--CCccccCCCCccEEEcccccCCcccCcccccCCCC
Q 037027 44 GNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGA--FPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPF 121 (205)
Q Consensus 44 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 121 (205)
+.+++|+.|++++|.+.+..+..+..+++|++|++.+|.++.. .+..+..+++|++|++++|.+.+.++...+..+++
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~ 429 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAES 429 (562)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTT
T ss_pred cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCccc
Confidence 5667788888888888766677778888888888888877642 23456678888888888888874466666677788
Q ss_pred cceeeecccccccCCCCCcCCCCcceEEEeecceeecccCccccccCCceEEEeecccccccCchhccCCCCCcEEeccC
Q 037027 122 LEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFD 201 (205)
Q Consensus 122 L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~L~~l~l~~ 201 (205)
|+.+++++|.+++..+..+. ++|+.|++++|.+. .+|..+..+++|++|++++|++++..+..+..+++|+.+++++
T Consensus 430 L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~ 506 (562)
T 3a79_B 430 ILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHD 506 (562)
T ss_dssp CCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCS
T ss_pred CCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecC
Confidence 88888888888755554443 67889999998887 5565666889999999999999843333488899999999999
Q ss_pred CcCC
Q 037027 202 NELQ 205 (205)
Q Consensus 202 n~l~ 205 (205)
|+++
T Consensus 507 N~~~ 510 (562)
T 3a79_B 507 NPWD 510 (562)
T ss_dssp CCBC
T ss_pred CCcC
Confidence 9864
No 61
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.84 E-value=8.8e-20 Score=130.68 Aligned_cols=154 Identities=23% Similarity=0.229 Sum_probs=88.4
Q ss_pred CCCCCCCCCCccceeeecCC---------CceEEEEEecCCcccccCCCCCCCCCCCcEEEeecCcceeecCccccCCCC
Q 037027 2 KNWNTSSPVCNWTGVTCDVH---------SHRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHT 72 (205)
Q Consensus 2 ~~~~~~~~~c~~~~~~~~~~---------~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~ 72 (205)
.+|......|.|.++.|... .++++.|+++++.+.+..+..|..+++|+.|++++|.+....+..|..+++
T Consensus 10 ~~~~~~~~~Cs~~~v~c~~~~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~ 89 (229)
T 3e6j_A 10 SAACPSQCSCSGTTVDCRSKRHASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQ 89 (229)
T ss_dssp -CCCCTTCEEETTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred hccCCCCCEEeCCEeEccCCCcCccCCCCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCC
Confidence 46888999999999888531 234555666666555555555555566666666666555333344555556
Q ss_pred ccEEEecCcccccCCCccccCCCCccEEEcccccCCcccCcccccCCCCcceeeecccccccCCCCCcCCCCcceEEEee
Q 037027 73 LKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLS 152 (205)
Q Consensus 73 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~ 152 (205)
|++|++++|.++...+..+..+++|++|++++|.+. .++..+ ..+++|+.|++++|.++...+..+..+++|+.|++.
T Consensus 90 L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~-~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~ 167 (229)
T 3e6j_A 90 LTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGI-ERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLF 167 (229)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTG-GGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECT
T ss_pred cCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCccc-ccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEee
Confidence 666666666555444444455555666666666555 444444 445555666666555554333445555555566655
Q ss_pred cceee
Q 037027 153 FNDFS 157 (205)
Q Consensus 153 ~~~~~ 157 (205)
+|++.
T Consensus 168 ~N~~~ 172 (229)
T 3e6j_A 168 GNPWD 172 (229)
T ss_dssp TSCBC
T ss_pred CCCcc
Confidence 55543
No 62
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.84 E-value=2.1e-20 Score=147.72 Aligned_cols=176 Identities=24% Similarity=0.193 Sum_probs=102.8
Q ss_pred ceEEEEEecCCcccccCCCCCCCCCCCcEEEeecCcceeecCccccCCCCccEEEecCcccc------------------
Q 037027 23 HRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLS------------------ 84 (205)
Q Consensus 23 ~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~------------------ 84 (205)
++++.|+++++.+.+..|..|+.+++|+.|++++|.+....+ +..+++|++|++++|.++
T Consensus 34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~~~~L~~L~L~~N~l 111 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNI 111 (487)
T ss_dssp GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCC
T ss_pred CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCCCCCcCEEECcCCcC
Confidence 367777777777766566667777777777777777664332 555666666665555543
Q ss_pred ----------------------cCCCccccCCCCccEEEcccccCCcccCcccccCCCCcceeeecccccccCCCCCcCC
Q 037027 85 ----------------------GAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSK 142 (205)
Q Consensus 85 ----------------------~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~ 142 (205)
...+..+..+++|++|++++|.+.+..+..+...++.|+.|++++|.+++.. .+..
T Consensus 112 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~--~~~~ 189 (487)
T 3oja_A 112 SRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVK--GQVV 189 (487)
T ss_dssp CCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEE--CCCC
T ss_pred CCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccccc--cccc
Confidence 2223333344555555555555543333333234555555666555554331 1223
Q ss_pred CCcceEEEeecceeecccCccccccCCceEEEeecccccccCchhccCCCCCcEEeccCCcC
Q 037027 143 CTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFDNEL 204 (205)
Q Consensus 143 ~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~L~~l~l~~n~l 204 (205)
+++|+.|++++|.+.+. +..+..+++|+.|++++|.++ .+|..+..+++|+.+++++|++
T Consensus 190 l~~L~~L~Ls~N~l~~~-~~~~~~l~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~l~~N~l 249 (487)
T 3oja_A 190 FAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGF 249 (487)
T ss_dssp CTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCB
T ss_pred CCCCCEEECCCCCCCCC-CHhHcCCCCccEEEecCCcCc-ccchhhccCCCCCEEEcCCCCC
Confidence 56666666666666543 334566677777777777776 3555666777777777777765
No 63
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.83 E-value=1e-19 Score=133.81 Aligned_cols=172 Identities=23% Similarity=0.230 Sum_probs=137.8
Q ss_pred EecCCcccccCCCCCCCCCCCcEEEeecCcceeecCccccCCCCccEEEecCcccccCCCccccCCCCccEEEcccccCC
Q 037027 29 NVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALS 108 (205)
Q Consensus 29 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 108 (205)
+-.+.++. .+|..+. ++++.|++++|.+....+..+..+++|++|++++|.+....+..+..+++|++|++++|.+.
T Consensus 13 ~c~~~~l~-~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 89 (276)
T 2z62_A 13 QCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89 (276)
T ss_dssp ECTTSCCS-SCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC
T ss_pred EecCCCcc-ccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccC
Confidence 33344443 4555443 57999999999999777778999999999999999998666778888999999999999997
Q ss_pred cccCcccccCCCCcceeeecccccccCCCCCcCCCCcceEEEeecceeecc-cCccccccCCceEEEeecccccccCchh
Q 037027 109 GEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGA-IPKEIGNVTKLKELYLVRNRLQGEIPRE 187 (205)
Q Consensus 109 ~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~-~~~~~~~~~~L~~l~l~~~~l~~~~~~~ 187 (205)
.++...+..+++|+++++++|.+....+..+..+++|+.|++++|.+.+. .|..+..+++|++|++++|.+++..+..
T Consensus 90 -~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 168 (276)
T 2z62_A 90 -SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD 168 (276)
T ss_dssp -EECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGG
T ss_pred -ccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHH
Confidence 55555558899999999999999876666789999999999999998753 5888899999999999999998766555
Q ss_pred ccCCCCCc----EEeccCCcC
Q 037027 188 LSNLAELE----LMSLFDNEL 204 (205)
Q Consensus 188 l~~~~~L~----~l~l~~n~l 204 (205)
+..+++|+ .+++++|.+
T Consensus 169 ~~~l~~L~~l~l~L~ls~n~l 189 (276)
T 2z62_A 169 LRVLHQMPLLNLSLDLSLNPM 189 (276)
T ss_dssp GHHHHTCTTCCEEEECCSSCC
T ss_pred hhhhhhccccceeeecCCCcc
Confidence 65444444 556665554
No 64
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.83 E-value=3.1e-20 Score=141.58 Aligned_cols=174 Identities=28% Similarity=0.212 Sum_probs=145.4
Q ss_pred EEEecCCcccccCCCCCCCCCCCcEEEeecCcceeecCcccc-CCCCccEEEecCcccccCCCccccCCCCccEEEcccc
Q 037027 27 VFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATF-ITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYN 105 (205)
Q Consensus 27 ~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 105 (205)
.++.+++.+. .+|..+ ...++.|++++|.+....+..+. .+++|++|++.+|.+....+..+..+++|++|++++|
T Consensus 22 ~l~c~~~~l~-~iP~~~--~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 22 ILSCSKQQLP-NVPQSL--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp EEECCSSCCS-SCCSSC--CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EEEeCCCCcC-ccCccC--CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence 5788888776 456544 24689999999999977777777 8999999999999998777778889999999999999
Q ss_pred cCCcccCcccccCCCCcceeeecccccccCCCCCcCCCCcceEEEeecceeecccCccc---cccCCceEEEeecccccc
Q 037027 106 ALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEI---GNVTKLKELYLVRNRLQG 182 (205)
Q Consensus 106 ~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~---~~~~~L~~l~l~~~~l~~ 182 (205)
.+. .++...+..+++|+.|++++|.++...+..+..+++|+.|++++|.+.+..+..+ ..+++|++|++++|.++.
T Consensus 99 ~l~-~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 177 (361)
T 2xot_A 99 HLH-TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK 177 (361)
T ss_dssp CCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred cCC-cCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence 997 6776666889999999999999987778889999999999999999985544444 568999999999999996
Q ss_pred cCchhccCCCC--CcEEeccCCcC
Q 037027 183 EIPRELSNLAE--LELMSLFDNEL 204 (205)
Q Consensus 183 ~~~~~l~~~~~--L~~l~l~~n~l 204 (205)
..+..+..++. ++.|++.+|++
T Consensus 178 l~~~~~~~l~~~~l~~l~l~~N~~ 201 (361)
T 2xot_A 178 LPLTDLQKLPAWVKNGLYLHNNPL 201 (361)
T ss_dssp CCHHHHHHSCHHHHTTEECCSSCE
T ss_pred cCHHHhhhccHhhcceEEecCCCc
Confidence 66678888887 48899999986
No 65
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.83 E-value=1.7e-19 Score=128.42 Aligned_cols=150 Identities=23% Similarity=0.288 Sum_probs=102.7
Q ss_pred EEecCCcccccCCCCCCCCCCCcEEEeecCcceeecCccccCCCCccEEEecCcccccCCCccccCCCCccEEEcccccC
Q 037027 28 FNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNAL 107 (205)
Q Consensus 28 l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 107 (205)
++.+++.+. .+|..+. ++++.|++.+|.+....+..|..+++|++|++++|.+....+..+..+.+|++|++++|.+
T Consensus 16 v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l 92 (220)
T 2v9t_B 16 VDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI 92 (220)
T ss_dssp EECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCC
T ss_pred EEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcC
Confidence 455555554 3444332 5677777777777755555677777777777777777666666677777777777777777
Q ss_pred CcccCcccccCCCCcceeeecccccccCCCCCcCCCCcceEEEeecceeecccCccccccCCceEEEeeccccc
Q 037027 108 SGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQ 181 (205)
Q Consensus 108 ~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~ 181 (205)
. .++...+..+++|+.|++++|.++...+..+..+++|+.|++++|.+.+..+..+..+++|+++++++|++.
T Consensus 93 ~-~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 93 T-ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp C-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred C-ccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 6 566655566777777777777777655666777777777777777776555556666777777777777664
No 66
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.83 E-value=1.1e-20 Score=141.29 Aligned_cols=155 Identities=21% Similarity=0.244 Sum_probs=119.7
Q ss_pred CCceEEEEEecCCcccccCCCCCCCCCCCcEEEeecCcceee--c--CccccCCCCccEEEecCcccccCCCc----ccc
Q 037027 21 HSHRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGS--I--PSATFITHTLKYVDLRGNQLSGAFPS----FIF 92 (205)
Q Consensus 21 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~--~~~~~~l~~L~~L~l~~~~~~~~~~~----~l~ 92 (205)
..++++.|++++|.+.+..+..|+.+++|+.|++++|.+... . ...+..+++|++|++++|.++ ..+. .+.
T Consensus 143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~ 221 (310)
T 4glp_A 143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAA 221 (310)
T ss_dssp BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHH
T ss_pred hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHh
Confidence 356888899998888877778888889999999999886421 1 223357788999999998876 2222 245
Q ss_pred CCCCccEEEcccccCCcccCcccccCC---CCcceeeecccccccCCCCCcCCCCcceEEEeecceeecccCccccccCC
Q 037027 93 NKSSLQDLDLSYNALSGEIPANICSNL---PFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTK 169 (205)
Q Consensus 93 ~l~~L~~L~l~~~~~~~~~~~~~~~~~---~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~ 169 (205)
.+++|++|++++|.+.+..+..+ ..+ ++|+.|++++|.++ .+|..+. ++|+.|++++|.+.+. |. +..+++
T Consensus 222 ~l~~L~~L~Ls~N~l~~~~p~~~-~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~ 295 (310)
T 4glp_A 222 AGVQPHSLDLSHNSLRATVNPSA-PRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPE 295 (310)
T ss_dssp HTCCCSSEECTTSCCCCCCCSCC-SSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCC
T ss_pred cCCCCCEEECCCCCCCccchhhH-HhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCC
Confidence 67999999999999985445444 333 79999999999998 5566553 7999999999999854 33 577899
Q ss_pred ceEEEeecccccc
Q 037027 170 LKELYLVRNRLQG 182 (205)
Q Consensus 170 L~~l~l~~~~l~~ 182 (205)
|++|++++|++++
T Consensus 296 L~~L~L~~N~l~~ 308 (310)
T 4glp_A 296 VDNLTLDGNPFLV 308 (310)
T ss_dssp CSCEECSSTTTSC
T ss_pred ccEEECcCCCCCC
Confidence 9999999999974
No 67
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.83 E-value=1e-19 Score=135.93 Aligned_cols=170 Identities=25% Similarity=0.342 Sum_probs=143.2
Q ss_pred CCceEEEEEecCCcccccCCCCCCCCCCCcEEEeecCcceeecCccccCCCCccEEEecCcccccCCCccccCCCCccEE
Q 037027 21 HSHRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDL 100 (205)
Q Consensus 21 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L 100 (205)
..++++.|+++++.+.. .+ .++.+++|+.|++++|.+.+..+ +..+++|++|++++|.+... ..+..+++|++|
T Consensus 39 ~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L 112 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTL 112 (308)
T ss_dssp HHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEE
T ss_pred HcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCCEE
Confidence 45689999999998874 34 57889999999999999985443 88999999999999998743 367889999999
Q ss_pred EcccccCCcccCcccccCCCCcceeeecccccccCCCCCcCCCCcceEEEeecceeecccCccccccCCceEEEeecccc
Q 037027 101 DLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRL 180 (205)
Q Consensus 101 ~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l 180 (205)
++++|.+. .++. +..+++|+.|++++|.+++..+ +..+++|+.|++++|.+.+..+ +..+++|++|++++|.+
T Consensus 113 ~l~~n~l~-~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l 185 (308)
T 1h6u_A 113 DLTSTQIT-DVTP--LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKI 185 (308)
T ss_dssp ECTTSCCC-CCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred ECCCCCCC-Cchh--hcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCcc
Confidence 99999997 4543 4789999999999999975432 7889999999999999875433 78899999999999999
Q ss_pred cccCchhccCCCCCcEEeccCCcCC
Q 037027 181 QGEIPRELSNLAELELMSLFDNELQ 205 (205)
Q Consensus 181 ~~~~~~~l~~~~~L~~l~l~~n~l~ 205 (205)
++..+ +..+++|++|++++|+++
T Consensus 186 ~~~~~--l~~l~~L~~L~L~~N~l~ 208 (308)
T 1h6u_A 186 SDISP--LASLPNLIEVHLKNNQIS 208 (308)
T ss_dssp CCCGG--GGGCTTCCEEECTTSCCC
T ss_pred CcChh--hcCCCCCCEEEccCCccC
Confidence 85433 889999999999999874
No 68
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.83 E-value=4.4e-20 Score=139.88 Aligned_cols=169 Identities=21% Similarity=0.318 Sum_probs=101.0
Q ss_pred eEEEEEecCCcccccCCCCCCCCCCCcEEEeecCcceeecCccccCCCCccEEEecCcccccCCCccccCCCCccEEEcc
Q 037027 24 RVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLS 103 (205)
Q Consensus 24 ~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 103 (205)
+++.|++++|.+....+ +..+++|+.+++.+|.+.+..+ +..+++|++|++.+|.++.. +. +..+++|++|+++
T Consensus 178 ~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~l~ 251 (347)
T 4fmz_A 178 DLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDL-SP-LANLSQLTWLEIG 251 (347)
T ss_dssp TCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECC
T ss_pred CCCEEEccCCccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCC-cc-hhcCCCCCEEECC
Confidence 44444444444432111 3444445555555544442221 45566677777776666532 22 5566777777777
Q ss_pred cccCCcccCcccccCCCCcceeeecccccccCCCCCcCCCCcceEEEeecceeecccCccccccCCceEEEeeccccccc
Q 037027 104 YNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGE 183 (205)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~ 183 (205)
+|.+. .++ . +..+++|+.+++++|.+++. +.+..+++|+.|++++|.+.+..+..+..+++|++|++++|++++.
T Consensus 252 ~n~l~-~~~-~-~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 326 (347)
T 4fmz_A 252 TNQIS-DIN-A-VKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDI 326 (347)
T ss_dssp SSCCC-CCG-G-GTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCC
T ss_pred CCccC-CCh-h-HhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccc
Confidence 77665 332 2 35667777777777776542 3466677777777777777666666677777777777777777754
Q ss_pred CchhccCCCCCcEEeccCCcCC
Q 037027 184 IPRELSNLAELELMSLFDNELQ 205 (205)
Q Consensus 184 ~~~~l~~~~~L~~l~l~~n~l~ 205 (205)
.+ +..+++|++|++++|+++
T Consensus 327 ~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 327 RP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp GG--GGGCTTCSEESSSCC---
T ss_pred cC--hhhhhccceeehhhhccc
Confidence 44 677777888888777764
No 69
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.82 E-value=2.6e-20 Score=155.29 Aligned_cols=179 Identities=18% Similarity=0.261 Sum_probs=142.4
Q ss_pred CCCceEEEEEecCCcccc-----------------cCCCCCC--CCCCCcEEEeecCcceeecCccccCCCCccEEEecC
Q 037027 20 VHSHRVTVFNVSGLNLTG-----------------TIPSQLG--NLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRG 80 (205)
Q Consensus 20 ~~~~~l~~l~l~~~~~~~-----------------~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 80 (205)
...++++.|++++|.+++ .+|+.++ ++++|+.|++++|.+....|..+..+++|++|++.+
T Consensus 445 ~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~ 524 (876)
T 4ecn_A 445 QRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIAC 524 (876)
T ss_dssp GGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTT
T ss_pred hcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcC
Confidence 355789999999999987 3888877 999999999999988778888899999999999999
Q ss_pred cc-ccc-CCCccccC-------CCCccEEEcccccCCcccCc--ccccCCCCcceeeecccccccCCCCCcCCCCcceEE
Q 037027 81 NQ-LSG-AFPSFIFN-------KSSLQDLDLSYNALSGEIPA--NICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQIL 149 (205)
Q Consensus 81 ~~-~~~-~~~~~l~~-------l~~L~~L~l~~~~~~~~~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l 149 (205)
|. ++. ..|..+.. +++|++|++++|.+. .++. .+ ..+++|+.|++++|.++ .+| .+..+++|+.|
T Consensus 525 N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l-~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L 600 (876)
T 4ecn_A 525 NRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASL-QKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDL 600 (876)
T ss_dssp CTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHH-TTCTTCCEEECTTSCCC-BCC-CCCTTSEESEE
T ss_pred CCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhh-hcCCCCCEEECCCCCcc-cch-hhcCCCcceEE
Confidence 97 664 45554443 458999999999887 7776 44 77888999999988887 566 78888888899
Q ss_pred EeecceeecccCccccccCC-ceEEEeecccccccCchhccCCCC--CcEEeccCCcC
Q 037027 150 GLSFNDFSGAIPKEIGNVTK-LKELYLVRNRLQGEIPRELSNLAE--LELMSLFDNEL 204 (205)
Q Consensus 150 ~l~~~~~~~~~~~~~~~~~~-L~~l~l~~~~l~~~~~~~l~~~~~--L~~l~l~~n~l 204 (205)
++++|.+. .+|..+..+++ |++|++++|.++ .+|..+...+. |+.|++++|.+
T Consensus 601 ~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l 656 (876)
T 4ecn_A 601 KLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKI 656 (876)
T ss_dssp ECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCT
T ss_pred ECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcC
Confidence 98888887 67777777887 888888888887 66666665543 77777777665
No 70
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.82 E-value=1.9e-19 Score=150.82 Aligned_cols=87 Identities=21% Similarity=0.235 Sum_probs=46.6
Q ss_pred CCceEEEEEecCCcccccCCCCCCCCCCCcEEEeecCcceeecCc--cccCCCCccEEEecCcccccCCC-ccccCCCCc
Q 037027 21 HSHRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPS--ATFITHTLKYVDLRGNQLSGAFP-SFIFNKSSL 97 (205)
Q Consensus 21 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L 97 (205)
..++++.|++++|.+.+..|..|+++++|+.|++++|.+.+..+. .+..+++|++|++++|.+....+ ..+..+++|
T Consensus 71 ~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L 150 (844)
T 3j0a_A 71 NLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSL 150 (844)
T ss_dssp SCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSC
T ss_pred CCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCC
Confidence 344556666666665555555566666666666666555532222 25555566666666655543322 344555555
Q ss_pred cEEEcccccC
Q 037027 98 QDLDLSYNAL 107 (205)
Q Consensus 98 ~~L~l~~~~~ 107 (205)
++|++++|.+
T Consensus 151 ~~L~Ls~N~i 160 (844)
T 3j0a_A 151 KSIDFSSNQI 160 (844)
T ss_dssp CEEEEESSCC
T ss_pred CEEECCCCcC
Confidence 5555555544
No 71
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.82 E-value=4.2e-19 Score=142.15 Aligned_cols=181 Identities=25% Similarity=0.359 Sum_probs=153.0
Q ss_pred CCCccceeeecCCCceEEEEEecCCcccccCCCCCCCCCCCcEEEeecCcceeecCccccCCCCccEEEecCcccccCCC
Q 037027 9 PVCNWTGVTCDVHSHRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFP 88 (205)
Q Consensus 9 ~~c~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 88 (205)
..|.|.+. | +.+++.++ .+|..+. ++++.|++++|.+....+..+..+++|++|++++|.+....+
T Consensus 2 ~~C~~~~~-c----------~~~~~~l~-~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~ 67 (549)
T 2z81_A 2 LSCDASGV-C----------DGRSRSFT-SIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEG 67 (549)
T ss_dssp CEECTTSE-E----------ECTTSCCS-SCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECT
T ss_pred ccCCCCce-E----------ECCCCccc-cccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccCh
Confidence 35777775 5 34455555 5565443 789999999999997778899999999999999999987777
Q ss_pred ccccCCCCccEEEcccccCCcccCcccccCCCCcceeeeccccccc-CCCCCcCCCCcceEEEeeccee-ecccCccccc
Q 037027 89 SFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHG-GIPSALSKCTYLQILGLSFNDF-SGAIPKEIGN 166 (205)
Q Consensus 89 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~-~~~~~~~~~~~L~~l~l~~~~~-~~~~~~~~~~ 166 (205)
..+..+++|++|++++|.+. .++...+..+++|++|++++|.+++ ..+..+..+++|++|++++|.. ....+..+..
T Consensus 68 ~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~ 146 (549)
T 2z81_A 68 DAFYSLGSLEHLDLSDNHLS-SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAG 146 (549)
T ss_dssp TTTTTCTTCCEEECTTSCCC-SCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTT
T ss_pred hhccccccCCEEECCCCccC-ccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhc
Confidence 88999999999999999998 5666545889999999999999975 3457789999999999999984 4344467889
Q ss_pred cCCceEEEeecccccccCchhccCCCCCcEEeccCCcC
Q 037027 167 VTKLKELYLVRNRLQGEIPRELSNLAELELMSLFDNEL 204 (205)
Q Consensus 167 ~~~L~~l~l~~~~l~~~~~~~l~~~~~L~~l~l~~n~l 204 (205)
+++|++|++++|.+++..+..+..+++|++|++++|.+
T Consensus 147 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~ 184 (549)
T 2z81_A 147 LTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSES 184 (549)
T ss_dssp CCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBS
T ss_pred ccccCeeeccCCcccccChhhhhccccCceEecccCcc
Confidence 99999999999999988899999999999999998864
No 72
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.82 E-value=2.3e-19 Score=127.70 Aligned_cols=151 Identities=23% Similarity=0.225 Sum_probs=130.3
Q ss_pred cEEEeecCcceeecCccccCCCCccEEEecCcccccCCCccccCCCCccEEEcccccCCcccCcccccCCCCcceeeecc
Q 037027 50 QSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQ 129 (205)
Q Consensus 50 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~ 129 (205)
+.++..++.+. .+|..+. +.++.|++.+|.+....+..+..+.+|++|++++|.+. .+....+..+++|+.|++++
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~-~~~~~~~~~l~~L~~L~Ls~ 89 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYG 89 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCC-EECTTTTTTCSSCCEEECCS
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCC-CcCHHHhhCCcCCCEEECCC
Confidence 56777777776 3444332 68999999999998777778889999999999999998 55444558899999999999
Q ss_pred cccccCCCCCcCCCCcceEEEeecceeecccCccccccCCceEEEeecccccccCchhccCCCCCcEEeccCCcC
Q 037027 130 NMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFDNEL 204 (205)
Q Consensus 130 ~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~L~~l~l~~n~l 204 (205)
|.++...+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|++
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 90 NKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred CcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence 999866666788999999999999999988888899999999999999999977778899999999999999986
No 73
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.82 E-value=1.2e-19 Score=134.56 Aligned_cols=169 Identities=26% Similarity=0.400 Sum_probs=140.8
Q ss_pred CCceEEEEEecCCcccccCCCCCCCCCCCcEEEeecCcceeecCccccCCCCccEEEecCcccccCCCccccCCCCccEE
Q 037027 21 HSHRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDL 100 (205)
Q Consensus 21 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L 100 (205)
..++++.|+++++.+... + .++.+++|+.|++++|.+.+..+ +..+++|++|++.+|.+.. . ..+..+++|++|
T Consensus 44 ~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L 117 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-L-SSLKDLKKLKSL 117 (291)
T ss_dssp HHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-G-GGGTTCTTCCEE
T ss_pred hcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-C-hhhccCCCCCEE
Confidence 455789999999988643 3 47889999999999999985443 8899999999999999874 3 347889999999
Q ss_pred EcccccCCcccCcccccCCCCcceeeecccccccCCCCCcCCCCcceEEEeecceeecccCccccccCCceEEEeecccc
Q 037027 101 DLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRL 180 (205)
Q Consensus 101 ~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l 180 (205)
++++|.+. .++ .+ ..+++|+.|++++|.+++. ..+..+++|+.|++++|.+.+..+ +..+++|++|++++|.+
T Consensus 118 ~L~~n~i~-~~~-~l-~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i 190 (291)
T 1h6t_A 118 SLEHNGIS-DIN-GL-VHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI 190 (291)
T ss_dssp ECTTSCCC-CCG-GG-GGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred ECCCCcCC-CCh-hh-cCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcC
Confidence 99999997 443 33 6789999999999999754 678889999999999999876544 78899999999999999
Q ss_pred cccCchhccCCCCCcEEeccCCcC
Q 037027 181 QGEIPRELSNLAELELMSLFDNEL 204 (205)
Q Consensus 181 ~~~~~~~l~~~~~L~~l~l~~n~l 204 (205)
++ ++ .+..+++|+.|++++|++
T Consensus 191 ~~-l~-~l~~l~~L~~L~l~~n~i 212 (291)
T 1h6t_A 191 SD-LR-ALAGLKNLDVLELFSQEC 212 (291)
T ss_dssp CB-CG-GGTTCTTCSEEEEEEEEE
T ss_pred CC-Ch-hhccCCCCCEEECcCCcc
Confidence 84 34 488999999999999975
No 74
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.82 E-value=5.1e-19 Score=126.70 Aligned_cols=152 Identities=22% Similarity=0.258 Sum_probs=118.7
Q ss_pred EEEecCCcccccCCCCCCCCCCCcEEEeecCcceeecCccccCCCCccEEEecCcccccCCCccccCCCCccEEEccccc
Q 037027 27 VFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNA 106 (205)
Q Consensus 27 ~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 106 (205)
.++.+++.+. .+|..+. ++|+.|++++|.+....+..+..+++|++|++.+|.+....+..+..+++|++|++++|.
T Consensus 23 ~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~ 99 (229)
T 3e6j_A 23 TVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ 99 (229)
T ss_dssp EEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCc
Confidence 4677777765 4555443 778899999998887677778888889999998888875555667778888888888888
Q ss_pred CCcccCcccccCCCCcceeeecccccccCCCCCcCCCCcceEEEeecceeecccCccccccCCceEEEeeccccccc
Q 037027 107 LSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGE 183 (205)
Q Consensus 107 ~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~ 183 (205)
+. .++...+..+++|+.|++++|.++ .+|..+..+++|+.|++++|.+.+..+..+..+++|+++++.+|++...
T Consensus 100 l~-~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 174 (229)
T 3e6j_A 100 LT-VLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCE 174 (229)
T ss_dssp CC-CCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTT
T ss_pred CC-ccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCC
Confidence 87 566665577888888888888887 5677777888888888888888766666677788888888888887743
No 75
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.82 E-value=4e-19 Score=142.78 Aligned_cols=106 Identities=27% Similarity=0.407 Sum_probs=73.7
Q ss_pred ceEEEEEecCCcccccCCCCCCCCCCCcEEEeecCcceeecCccccCCCCccEEEecCcccccCCCccccCCCCccEEEc
Q 037027 23 HRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDL 102 (205)
Q Consensus 23 ~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 102 (205)
++++.|++++|.+.+..+..|+++++|+.|++++|.+....+.+|..+++|++|++++|.++ .+|.. .+.+|++|++
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L 128 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLDL 128 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEEC
T ss_pred CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEEC
Confidence 57888888888887666677888888888888888888766777888888888888887776 33333 5666777777
Q ss_pred ccccCCcccC-cccccCCCCcceeeeccccc
Q 037027 103 SYNALSGEIP-ANICSNLPFLEYISLSQNMF 132 (205)
Q Consensus 103 ~~~~~~~~~~-~~~~~~~~~L~~l~l~~~~~ 132 (205)
++|.+. .++ ...+..+++|+.|++++|.+
T Consensus 129 s~N~l~-~l~~p~~~~~l~~L~~L~L~~n~l 158 (562)
T 3a79_B 129 SFNDFD-VLPVCKEFGNLTKLTFLGLSAAKF 158 (562)
T ss_dssp CSSCCS-BCCCCGGGGGCTTCCEEEEECSBC
T ss_pred CCCCcc-ccCchHhhcccCcccEEecCCCcc
Confidence 776665 322 12225555566666555544
No 76
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.81 E-value=1.5e-19 Score=146.61 Aligned_cols=158 Identities=20% Similarity=0.157 Sum_probs=98.8
Q ss_pred ceEEEEEecCCcccccCCCCCCCCCCCcEEEeecCcceeecCccccCCCCccEEEecCcccccCCCccccCCCCccEEEc
Q 037027 23 HRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDL 102 (205)
Q Consensus 23 ~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 102 (205)
+.++.|++++|.++...+..|+++++|+.|++++|.+....+.+|..+++|++|++++|.++...+..|..+.+|++|++
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~L 131 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 131 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEEC
T ss_pred cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEEC
Confidence 35667777777766555566677777777777777766555566667777777777777666444455666677777777
Q ss_pred ccccCCcccCcccccCCCCcceeeeccccccc-CCCCCcCCCCcceEEEeecceeecccCccccccCCc----eEEEeec
Q 037027 103 SYNALSGEIPANICSNLPFLEYISLSQNMFHG-GIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKL----KELYLVR 177 (205)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~-~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L----~~l~l~~ 177 (205)
++|.+. .++...+..+++|++|++++|.++. ..+..+..+++|+.|++++|.+.+..+..+..+.++ ..++++.
T Consensus 132 s~N~l~-~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~ 210 (635)
T 4g8a_A 132 VETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 210 (635)
T ss_dssp TTSCCC-CSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTT
T ss_pred CCCcCC-CCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhccc
Confidence 777665 4554444666677777777776654 234556666677777777776655545444433322 2455555
Q ss_pred cccc
Q 037027 178 NRLQ 181 (205)
Q Consensus 178 ~~l~ 181 (205)
|.+.
T Consensus 211 n~l~ 214 (635)
T 4g8a_A 211 NPMN 214 (635)
T ss_dssp CCCC
T ss_pred Cccc
Confidence 5555
No 77
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.81 E-value=3.8e-19 Score=125.53 Aligned_cols=167 Identities=21% Similarity=0.217 Sum_probs=131.5
Q ss_pred EEEecCCcccccCCCCCCCCCCCcEEEeecCcceeecCccccCCCCccEEEecCcccccCCCccccCCCCccEEEccccc
Q 037027 27 VFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNA 106 (205)
Q Consensus 27 ~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 106 (205)
.++..++.+. .+|..+ .++++.|++++|.+....+..+..+++|++|++.+|.+....+..+..+.+|++|++++|.
T Consensus 11 ~v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 87 (208)
T 2o6s_A 11 TVECYSQGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ 87 (208)
T ss_dssp EEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEEecCCCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc
Confidence 4567776665 344333 4689999999999986666678889999999999999886656667789999999999999
Q ss_pred CCcccCcccccCCCCcceeeecccccccCCCCCcCCCCcceEEEeecceeecccCccccccCCceEEEeecccccccCch
Q 037027 107 LSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPR 186 (205)
Q Consensus 107 ~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~ 186 (205)
+. .++...+..+++|+.|++++|.++...+..+..+++|+.|++++|.+.+..+..+..+++|+++++++|.+...
T Consensus 88 l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~--- 163 (208)
T 2o6s_A 88 LQ-SLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT--- 163 (208)
T ss_dssp CC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCC---
T ss_pred CC-ccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecC---
Confidence 97 66666557889999999999999866666788899999999999998866666678899999999999987633
Q ss_pred hccCCCCCcEEeccCCcC
Q 037027 187 ELSNLAELELMSLFDNEL 204 (205)
Q Consensus 187 ~l~~~~~L~~l~l~~n~l 204 (205)
++.|+.|++..|.+
T Consensus 164 ----~~~l~~L~~~~n~~ 177 (208)
T 2o6s_A 164 ----CPGIRYLSEWINKH 177 (208)
T ss_dssp ----TTTTHHHHHHHHHC
T ss_pred ----CCCHHHHHHHHHhC
Confidence 34555555555443
No 78
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.81 E-value=6.8e-19 Score=140.13 Aligned_cols=85 Identities=26% Similarity=0.174 Sum_probs=46.6
Q ss_pred CCceEEEEEecCCcccccCCCCCCCCCCCcEEEeecCcceeecCccccCCCCccEEEecCccccc-CCCccccCCCCccE
Q 037027 21 HSHRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSG-AFPSFIFNKSSLQD 99 (205)
Q Consensus 21 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~ 99 (205)
..++++.|++++|.+.+..|..|+++++|+.|++++|.+.. ++.. .+++|++|++++|.++. ..|..+..+.+|++
T Consensus 43 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~ 119 (520)
T 2z7x_B 43 SLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVK-ISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKF 119 (520)
T ss_dssp TCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCE-EECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCE
T ss_pred ccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceee-cCcc--ccCCccEEeccCCccccccchhhhccCCcceE
Confidence 33455555665555554445555555666666666655552 2222 45556666666665553 23455556666666
Q ss_pred EEcccccCC
Q 037027 100 LDLSYNALS 108 (205)
Q Consensus 100 L~l~~~~~~ 108 (205)
|++++|.+.
T Consensus 120 L~L~~n~l~ 128 (520)
T 2z7x_B 120 LGLSTTHLE 128 (520)
T ss_dssp EEEEESSCC
T ss_pred EEecCcccc
Confidence 666665543
No 79
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.81 E-value=7.1e-19 Score=142.70 Aligned_cols=167 Identities=23% Similarity=0.219 Sum_probs=139.3
Q ss_pred cccccCCCCCCCCCCCcEEEeecCcceeecCccccCCCCccEEEecCcccccCCCccccCCCCccEEEcccccCCcccCc
Q 037027 34 NLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPA 113 (205)
Q Consensus 34 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 113 (205)
+++ .+|..+. ++++.|++++|.++...+.+|..+++|++|++++|.++...+..|..+++|++|++++|++. .++.
T Consensus 42 ~l~-~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~-~l~~ 117 (635)
T 4g8a_A 42 NFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLAL 117 (635)
T ss_dssp CCS-SCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC-EECG
T ss_pred CcC-ccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCC-CCCH
Confidence 444 4565442 47999999999999777789999999999999999998777778999999999999999998 7787
Q ss_pred ccccCCCCcceeeecccccccCCCCCcCCCCcceEEEeecceeec-ccCccccccCCceEEEeecccccccCchhccCCC
Q 037027 114 NICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSG-AIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLA 192 (205)
Q Consensus 114 ~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~-~~~~~~~~~~~L~~l~l~~~~l~~~~~~~l~~~~ 192 (205)
..|.++++|++|++++|.+++..+..+..+++|+.|++++|.+.. ..|..+..+++|++|++++|++++..+..+..+.
T Consensus 118 ~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~ 197 (635)
T 4g8a_A 118 GAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLH 197 (635)
T ss_dssp GGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHH
T ss_pred HHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchh
Confidence 777999999999999999987666779999999999999999865 3567778899999999999999877777666543
Q ss_pred C----CcEEeccCCcC
Q 037027 193 E----LELMSLFDNEL 204 (205)
Q Consensus 193 ~----L~~l~l~~n~l 204 (205)
+ ...++++.|++
T Consensus 198 ~l~~~~~~~~ls~n~l 213 (635)
T 4g8a_A 198 QMPLLNLSLDLSLNPM 213 (635)
T ss_dssp TCTTCCCEEECTTCCC
T ss_pred hhhhhhhhhhcccCcc
Confidence 3 33566666654
No 80
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.81 E-value=4.1e-19 Score=134.60 Aligned_cols=152 Identities=25% Similarity=0.406 Sum_probs=104.2
Q ss_pred CCCCCCCcEEEeecCcceeecCccccCCCCccEEEecCcccccCCCccccCCCCccEEEcccccCCcccCcccccCCCCc
Q 037027 43 LGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFL 122 (205)
Q Consensus 43 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L 122 (205)
+..+++|+.|++++|.+.+..+ +..+++|+.+++.+|.+....+ +..+++|++|++++|.+. .++. +..+++|
T Consensus 173 ~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~-~~~~--~~~l~~L 245 (347)
T 4fmz_A 173 IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKIT-DLSP--LANLSQL 245 (347)
T ss_dssp GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCC-CCGG--GTTCTTC
T ss_pred hccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccC-CCcc--hhcCCCC
Confidence 3344444444444444432111 4444555555555555442222 556677888888888776 3433 3677888
Q ss_pred ceeeecccccccCCCCCcCCCCcceEEEeecceeecccCccccccCCceEEEeecccccccCchhccCCCCCcEEeccCC
Q 037027 123 EYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFDN 202 (205)
Q Consensus 123 ~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~L~~l~l~~n 202 (205)
+.+++++|.+++. +.+..+++|+.|++++|.+.+. ..+..+++|++|++++|.+++..+..+..+++|+.|++++|
T Consensus 246 ~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n 321 (347)
T 4fmz_A 246 TWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQN 321 (347)
T ss_dssp CEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSS
T ss_pred CEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCC
Confidence 8888888887642 4577888899999998887643 45677889999999999998788888999999999999999
Q ss_pred cCC
Q 037027 203 ELQ 205 (205)
Q Consensus 203 ~l~ 205 (205)
+++
T Consensus 322 ~l~ 324 (347)
T 4fmz_A 322 HIT 324 (347)
T ss_dssp SCC
T ss_pred ccc
Confidence 874
No 81
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.81 E-value=3.7e-19 Score=126.67 Aligned_cols=152 Identities=16% Similarity=0.197 Sum_probs=129.5
Q ss_pred EEEecCCcccccCCCCCCCCCCCcEEEeecCcceeecC-ccccCCCCccEEEecCcccccCCCccccCCCCccEEEcccc
Q 037027 27 VFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIP-SATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYN 105 (205)
Q Consensus 27 ~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 105 (205)
.++++++.++ .+|..+ ...++.|++++|.+....+ ..|..+++|++|++.+|.++...+..+..+.+|++|++++|
T Consensus 15 ~l~~s~n~l~-~iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 15 TVDCSNQKLN-KIPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp EEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EeEeCCCCcc-cCccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence 5788888876 456554 3457899999999986644 46889999999999999998777778889999999999999
Q ss_pred cCCcccCcccccCCCCcceeeecccccccCCCCCcCCCCcceEEEeecceeecccCccccccCCceEEEeecccccc
Q 037027 106 ALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQG 182 (205)
Q Consensus 106 ~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~ 182 (205)
.+. .++...+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.+..+..+..+++|+++++++|++..
T Consensus 92 ~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 167 (220)
T 2v70_A 92 RLE-NVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNC 167 (220)
T ss_dssp CCC-CCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEEC
T ss_pred ccC-ccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcC
Confidence 997 6666666889999999999999987778889999999999999999987778888899999999999998874
No 82
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.80 E-value=4.6e-19 Score=124.08 Aligned_cols=153 Identities=16% Similarity=0.258 Sum_probs=119.0
Q ss_pred CCCCCCcEEEeecCcceeecCccccCCCCccEEEecCcccccCCCccccCCCCccEEEcccccCCcccCcccccCCCCcc
Q 037027 44 GNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLE 123 (205)
Q Consensus 44 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 123 (205)
+.+++|+.|+++++.+. ..+ .+..+++|++|++.+|.+. ....+..+++|++|++++|.+.+..+..+ ..+++|+
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l-~~l~~L~ 115 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNL-SGLTSLT 115 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCC-TTCTTCC
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhh-cCCCCCC
Confidence 45677888888888887 333 5778888999999888664 23467778889999999998874445544 7788899
Q ss_pred eeeecccccccCCCCCcCCCCcceEEEeecce-eecccCccccccCCceEEEeecccccccCchhccCCCCCcEEeccCC
Q 037027 124 YISLSQNMFHGGIPSALSKCTYLQILGLSFND-FSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFDN 202 (205)
Q Consensus 124 ~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~-~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~L~~l~l~~n 202 (205)
.|++++|.+++..+..+..+++|+.|++++|. +. ..+ .+..+++|++|++++|.+++ ++ .+..+++|+.|++++|
T Consensus 116 ~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 116 LLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQ 191 (197)
T ss_dssp EEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC
T ss_pred EEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCc
Confidence 99999998886666778888999999999997 54 344 57788999999999999985 33 7888999999999999
Q ss_pred cCC
Q 037027 203 ELQ 205 (205)
Q Consensus 203 ~l~ 205 (205)
+++
T Consensus 192 ~i~ 194 (197)
T 4ezg_A 192 TIG 194 (197)
T ss_dssp ---
T ss_pred ccC
Confidence 874
No 83
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.80 E-value=2.3e-18 Score=122.53 Aligned_cols=152 Identities=20% Similarity=0.197 Sum_probs=122.9
Q ss_pred CCCCCCccceeeecC---------CCceEEEEEecCCcccccCC-CCCCCCCCCcEEEeecCcceeecCccccCCCCccE
Q 037027 6 TSSPVCNWTGVTCDV---------HSHRVTVFNVSGLNLTGTIP-SQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKY 75 (205)
Q Consensus 6 ~~~~~c~~~~~~~~~---------~~~~l~~l~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 75 (205)
.+...|.|....|.. ..+.++.|+++++.+.+..+ ..|..+++|+.|++++|.+....+..|..+++|++
T Consensus 6 P~~C~C~~~~l~~s~n~l~~iP~~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~ 85 (220)
T 2v70_A 6 PEKCRCEGTTVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNE 85 (220)
T ss_dssp CTTCEEETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred CCCCEECCCEeEeCCCCcccCccCCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCE
Confidence 345567777777733 22357789999999886644 45788999999999999998777778899999999
Q ss_pred EEecCcccccCCCccccCCCCccEEEcccccCCcccCcccccCCCCcceeeecccccccCCCCCcCCCCcceEEEeecce
Q 037027 76 VDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFND 155 (205)
Q Consensus 76 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~ 155 (205)
|++++|.++...+..+..+++|++|++++|.+. .+....+..+++|+.|++++|.+++..+..+..+++|+.|++++|+
T Consensus 86 L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 86 ILLTSNRLENVQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp EECCSSCCCCCCGGGGTTCSSCCEEECTTSCCC-CBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred EECCCCccCccCHhHhcCCcCCCEEECCCCcCC-eECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcC
Confidence 999999998776777888999999999999998 4544444788999999999999987778888899999999999998
Q ss_pred eec
Q 037027 156 FSG 158 (205)
Q Consensus 156 ~~~ 158 (205)
+..
T Consensus 165 l~c 167 (220)
T 2v70_A 165 FNC 167 (220)
T ss_dssp EEC
T ss_pred CcC
Confidence 763
No 84
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.79 E-value=4.5e-21 Score=144.71 Aligned_cols=178 Identities=20% Similarity=0.169 Sum_probs=76.5
Q ss_pred eEEEEEecCCcccccCCCCCCCCCCCcEEEeecCcceee-cCccccCCCCccEEEecCcccccCCCccccCCCCccEEEc
Q 037027 24 RVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGS-IPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDL 102 (205)
Q Consensus 24 ~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 102 (205)
+++.+++.++.+.+..+. +..+++|+.|++++|.+.+. .+..+..+++|++|++.+|.++...+..+..+++|++|++
T Consensus 71 ~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L 149 (336)
T 2ast_B 71 GVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL 149 (336)
T ss_dssp TCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEEC
T ss_pred cceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEEC
Confidence 445555555555433332 33455555555555554422 3334445555555555555544333444444555555555
Q ss_pred ccc-cCCcccCcccccCCCCcceeeeccc-ccccC-CCCCcCCCC-cceEEEeecce--ee-cccCccccccCCceEEEe
Q 037027 103 SYN-ALSGEIPANICSNLPFLEYISLSQN-MFHGG-IPSALSKCT-YLQILGLSFND--FS-GAIPKEIGNVTKLKELYL 175 (205)
Q Consensus 103 ~~~-~~~~~~~~~~~~~~~~L~~l~l~~~-~~~~~-~~~~~~~~~-~L~~l~l~~~~--~~-~~~~~~~~~~~~L~~l~l 175 (205)
++| .+++......+..+++|+.|++++| .+++. .+..+..++ +|+.|++++|. +. +..+..+..+++|++|++
T Consensus 150 ~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l 229 (336)
T 2ast_B 150 SGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDL 229 (336)
T ss_dssp TTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEEC
T ss_pred CCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeC
Confidence 555 3332111111233444555555544 44321 222233344 44444444442 21 122223333444444444
Q ss_pred eccc-ccccCchhccCCCCCcEEeccCC
Q 037027 176 VRNR-LQGEIPRELSNLAELELMSLFDN 202 (205)
Q Consensus 176 ~~~~-l~~~~~~~l~~~~~L~~l~l~~n 202 (205)
++|. +++..+..+..+++|++|++++|
T Consensus 230 ~~~~~l~~~~~~~l~~l~~L~~L~l~~~ 257 (336)
T 2ast_B 230 SDSVMLKNDCFQEFFQLNYLQHLSLSRC 257 (336)
T ss_dssp TTCTTCCGGGGGGGGGCTTCCEEECTTC
T ss_pred CCCCcCCHHHHHHHhCCCCCCEeeCCCC
Confidence 4444 33333334444444444444443
No 85
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.78 E-value=6.6e-19 Score=134.25 Aligned_cols=174 Identities=24% Similarity=0.246 Sum_probs=142.0
Q ss_pred CCCCCccceeeecC---------CCceEEEEEecCCcccccCCCCCC-CCCCCcEEEeecCcceeecCccccCCCCccEE
Q 037027 7 SSPVCNWTGVTCDV---------HSHRVTVFNVSGLNLTGTIPSQLG-NLSSLQSLNLSFNRLSGSIPSATFITHTLKYV 76 (205)
Q Consensus 7 ~~~~c~~~~~~~~~---------~~~~l~~l~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 76 (205)
....|.+....|.. ..+.++.|++++|.++...+..|. .+++|+.|++++|.+....+..|..+++|++|
T Consensus 14 ~~C~C~~~~l~c~~~~l~~iP~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L 93 (361)
T 2xot_A 14 ANCLCASNILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYL 93 (361)
T ss_dssp TTCEEETTEEECCSSCCSSCCSSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred CCCEECCCEEEeCCCCcCccCccCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEE
Confidence 44556666666632 234588999999999977777787 89999999999999997777889999999999
Q ss_pred EecCcccccCCCccccCCCCccEEEcccccCCcccCcccccCCCCcceeeecccccccCCCCCc---CCCCcceEEEeec
Q 037027 77 DLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSAL---SKCTYLQILGLSF 153 (205)
Q Consensus 77 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~---~~~~~L~~l~l~~ 153 (205)
++++|.+....+..+..+.+|++|++++|.+. .+....+..+++|+.|++++|.++...+..+ ..+++|+.|++++
T Consensus 94 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~ 172 (361)
T 2xot_A 94 DLSSNHLHTLDEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSS 172 (361)
T ss_dssp ECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCS
T ss_pred ECCCCcCCcCCHHHhCCCcCCCEEECCCCccc-EECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCC
Confidence 99999998776777889999999999999998 5655555889999999999999986444444 5689999999999
Q ss_pred ceeecccCccccccCC--ceEEEeeccccc
Q 037027 154 NDFSGAIPKEIGNVTK--LKELYLVRNRLQ 181 (205)
Q Consensus 154 ~~~~~~~~~~~~~~~~--L~~l~l~~~~l~ 181 (205)
|.+....+..+..++. ++.+++.+|++.
T Consensus 173 N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 173 NKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp SCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred CCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence 9998655566666766 478999998875
No 86
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.78 E-value=8.1e-19 Score=141.59 Aligned_cols=170 Identities=26% Similarity=0.393 Sum_probs=138.0
Q ss_pred CCCceEEEEEecCCcccccCCCCCCCCCCCcEEEeecCcceeecCccccCCCCccEEEecCcccccCCCccccCCCCccE
Q 037027 20 VHSHRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQD 99 (205)
Q Consensus 20 ~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 99 (205)
...++++.|+++++.+.. ++ .++.+++|+.|++++|.+.+..+ +..+++|+.|++.+|.+.. . ..+..+++|++
T Consensus 40 ~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~ 113 (605)
T 1m9s_A 40 NELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-L-SSLKDLKKLKS 113 (605)
T ss_dssp HHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-C-TTSTTCTTCCE
T ss_pred hcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-C-hhhccCCCCCE
Confidence 345578888999888763 33 47889999999999999885443 7889999999999998873 3 36778899999
Q ss_pred EEcccccCCcccCcccccCCCCcceeeecccccccCCCCCcCCCCcceEEEeecceeecccCccccccCCceEEEeeccc
Q 037027 100 LDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNR 179 (205)
Q Consensus 100 L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~ 179 (205)
|++++|.+. .++ . +..+++|+.|++++|.+.+. ..+..+++|+.|++++|.+.+..+ +..+++|+.|+|++|.
T Consensus 114 L~Ls~N~l~-~l~-~-l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~ 186 (605)
T 1m9s_A 114 LSLEHNGIS-DIN-G-LVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNH 186 (605)
T ss_dssp EECTTSCCC-CCG-G-GGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred EEecCCCCC-CCc-c-ccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCC
Confidence 999999987 443 2 36789999999999988753 678888999999999999876555 7788999999999999
Q ss_pred ccccCchhccCCCCCcEEeccCCcC
Q 037027 180 LQGEIPRELSNLAELELMSLFDNEL 204 (205)
Q Consensus 180 l~~~~~~~l~~~~~L~~l~l~~n~l 204 (205)
+.+. ..+..+++|+.|++++|++
T Consensus 187 i~~l--~~l~~l~~L~~L~L~~N~l 209 (605)
T 1m9s_A 187 ISDL--RALAGLKNLDVLELFSQEC 209 (605)
T ss_dssp CCBC--GGGTTCTTCSEEECCSEEE
T ss_pred CCCC--hHHccCCCCCEEEccCCcC
Confidence 9853 4688899999999999875
No 87
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.78 E-value=4.8e-18 Score=129.00 Aligned_cols=195 Identities=15% Similarity=0.057 Sum_probs=140.4
Q ss_pred CCCccceeeecC---------CCceEEEEEecCCcccccCCCCCCCCCCCcEEEeecCcceee-cCccccCCCCccE-EE
Q 037027 9 PVCNWTGVTCDV---------HSHRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGS-IPSATFITHTLKY-VD 77 (205)
Q Consensus 9 ~~c~~~~~~~~~---------~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~-L~ 77 (205)
..|.+..+.|.. ..++++.|++++|.++...+..|+++++|+.|++++|.+... .+.+|.++++++. +.
T Consensus 7 C~C~~~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~ 86 (350)
T 4ay9_X 7 CHCSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRI 86 (350)
T ss_dssp SEEETTEEEEESTTCCSCCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEE
T ss_pred cEeeCCEEEecCCCCCccCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhc
Confidence 446777777732 235789999999999866667899999999999999998544 4457888888775 55
Q ss_pred ecCcccccCCCccccCCCCccEEEcccccCCcccCcccccCCCCcceeeecc-cccccCCCCCcCCC-CcceEEEeecce
Q 037027 78 LRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQ-NMFHGGIPSALSKC-TYLQILGLSFND 155 (205)
Q Consensus 78 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~-~~~~~~~~~~~~~~-~~L~~l~l~~~~ 155 (205)
+..+.+....+..+..+++|++|++.+|.+. .++...+.....+..+++.+ +.+....+..+..+ ..++.|++++|.
T Consensus 87 ~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~ 165 (350)
T 4ay9_X 87 EKANNLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNG 165 (350)
T ss_dssp EEETTCCEECTTSBCCCTTCCEEEEEEECCS-SCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSC
T ss_pred ccCCcccccCchhhhhccccccccccccccc-cCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccc
Confidence 5667887677788889999999999999987 55544334455566777755 34554444455554 357888888888
Q ss_pred eecccCccccccCCceEEEeec-ccccccCchhccCCCCCcEEeccCCcCC
Q 037027 156 FSGAIPKEIGNVTKLKELYLVR-NRLQGEIPRELSNLAELELMSLFDNELQ 205 (205)
Q Consensus 156 ~~~~~~~~~~~~~~L~~l~l~~-~~l~~~~~~~l~~~~~L~~l~l~~n~l~ 205 (205)
+....+.. ...++++++++.+ |.++...+++|..+++|+.|++++|.|+
T Consensus 166 i~~i~~~~-f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~ 215 (350)
T 4ay9_X 166 IQEIHNSA-FNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH 215 (350)
T ss_dssp CCEECTTS-STTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCC
T ss_pred ccCCChhh-ccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcC
Confidence 87443333 3456788888875 4566444567788888888888888764
No 88
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.78 E-value=3.3e-18 Score=134.56 Aligned_cols=37 Identities=27% Similarity=0.398 Sum_probs=16.1
Q ss_pred cccCCceEEEeecccccccCchhccCCCCCcEEeccCCc
Q 037027 165 GNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFDNE 203 (205)
Q Consensus 165 ~~~~~L~~l~l~~~~l~~~~~~~l~~~~~L~~l~l~~n~ 203 (205)
..+++|++|++++|.+.+..| +..+++|+.|++++|+
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~ 386 (466)
T 1o6v_A 350 ANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQA 386 (466)
T ss_dssp TTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEE
T ss_pred ccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCc
Confidence 334444444444444443322 4444444444444443
No 89
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.77 E-value=1.3e-20 Score=142.21 Aligned_cols=182 Identities=22% Similarity=0.273 Sum_probs=145.7
Q ss_pred CCceEEEEEecCCccccc-CCCCCCCCCCCcEEEeecCcceeecCccccCCCCccEEEecCc-cccc-CCCccccCCCCc
Q 037027 21 HSHRVTVFNVSGLNLTGT-IPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGN-QLSG-AFPSFIFNKSSL 97 (205)
Q Consensus 21 ~~~~l~~l~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~-~~~~-~~~~~l~~l~~L 97 (205)
..++++.|++++|.+... .+..+..+++|+.|++++|.+.+..+..+..+++|++|++.+| .++. ..+..+..+++|
T Consensus 91 ~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L 170 (336)
T 2ast_B 91 SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRL 170 (336)
T ss_dssp CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTC
T ss_pred cCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCC
Confidence 456899999999988754 6777888999999999999988767777888999999999999 5653 245556778999
Q ss_pred cEEEcccc-cCCcccCcccccCCC-Ccceeeecccc--cc-cCCCCCcCCCCcceEEEeecce-eecccCccccccCCce
Q 037027 98 QDLDLSYN-ALSGEIPANICSNLP-FLEYISLSQNM--FH-GGIPSALSKCTYLQILGLSFND-FSGAIPKEIGNVTKLK 171 (205)
Q Consensus 98 ~~L~l~~~-~~~~~~~~~~~~~~~-~L~~l~l~~~~--~~-~~~~~~~~~~~~L~~l~l~~~~-~~~~~~~~~~~~~~L~ 171 (205)
++|++++| .+++......+..++ +|++|++++|. ++ ...+..+..+++|+.|++++|. +.+..+..+..+++|+
T Consensus 171 ~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~ 250 (336)
T 2ast_B 171 DELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQ 250 (336)
T ss_dssp CEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCC
T ss_pred CEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCC
Confidence 99999999 886432233346788 99999999994 44 2345566778999999999998 6666777888899999
Q ss_pred EEEeecc-cccccCchhccCCCCCcEEeccCC
Q 037027 172 ELYLVRN-RLQGEIPRELSNLAELELMSLFDN 202 (205)
Q Consensus 172 ~l~l~~~-~l~~~~~~~l~~~~~L~~l~l~~n 202 (205)
+|++++| .+.+.....+..+++|+.|++++|
T Consensus 251 ~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 251 HLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp EEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred EeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 9999999 455444457888999999999987
No 90
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.77 E-value=2.9e-18 Score=134.86 Aligned_cols=172 Identities=26% Similarity=0.387 Sum_probs=143.0
Q ss_pred cCCCceEEEEEecCCcccccCCCCCCCCCCCcEEEeecCcceeecCccccCCCCccEEEecCcccccCCCccccCCCCcc
Q 037027 19 DVHSHRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQ 98 (205)
Q Consensus 19 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 98 (205)
....++++.|+++++.+.+..+ ++.+++|+.|++++|.+.+. ..+..+++|++|++.+|.+....+ +..+++|+
T Consensus 195 l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~ 268 (466)
T 1o6v_A 195 LAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLT 268 (466)
T ss_dssp GGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCS
T ss_pred hccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhcCCCCC
Confidence 4456789999999998875544 67789999999999998743 467889999999999999874433 77889999
Q ss_pred EEEcccccCCcccCcccccCCCCcceeeecccccccCCCCCcCCCCcceEEEeecceeecccCccccccCCceEEEeecc
Q 037027 99 DLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRN 178 (205)
Q Consensus 99 ~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~ 178 (205)
+|++++|.+. .++. +..++.|+.|++++|.+.+..+ +..+++|+.|++++|.+.+..+ +..+++|++|++++|
T Consensus 269 ~L~l~~n~l~-~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n 341 (466)
T 1o6v_A 269 ELKLGANQIS-NISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNN 341 (466)
T ss_dssp EEECCSSCCC-CCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSS
T ss_pred EEECCCCccC-cccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCC
Confidence 9999999987 4443 4778999999999999875433 7788999999999999876554 678999999999999
Q ss_pred cccccCchhccCCCCCcEEeccCCcCC
Q 037027 179 RLQGEIPRELSNLAELELMSLFDNELQ 205 (205)
Q Consensus 179 ~l~~~~~~~l~~~~~L~~l~l~~n~l~ 205 (205)
.+++. ..++.+++|+.|++++|+++
T Consensus 342 ~l~~~--~~l~~l~~L~~L~l~~n~l~ 366 (466)
T 1o6v_A 342 KVSDV--SSLANLTNINWLSAGHNQIS 366 (466)
T ss_dssp CCCCC--GGGTTCTTCCEEECCSSCCC
T ss_pred ccCCc--hhhccCCCCCEEeCCCCccC
Confidence 99854 57889999999999999874
No 91
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.77 E-value=4.1e-18 Score=119.25 Aligned_cols=153 Identities=20% Similarity=0.267 Sum_probs=126.2
Q ss_pred CCceEEEEEecCCcccccCCCCCCCCCCCcEEEeecCcceeecCccccCCCCccEEEecCcccccCCCccccCCCCccEE
Q 037027 21 HSHRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDL 100 (205)
Q Consensus 21 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L 100 (205)
..++++.|+++++.+. .++ .+..+++|+.|++++|.+. ....+..+++|++|++++|.++...+..+..+++|++|
T Consensus 42 ~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 42 QMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred hcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence 4457899999999887 445 5888999999999999776 33478889999999999999987678888899999999
Q ss_pred EcccccCCcccCcccccCCCCcceeeecccc-cccCCCCCcCCCCcceEEEeecceeecccCccccccCCceEEEeeccc
Q 037027 101 DLSYNALSGEIPANICSNLPFLEYISLSQNM-FHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNR 179 (205)
Q Consensus 101 ~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~-~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~ 179 (205)
++++|.+.+..+..+ ..+++|+.|++++|. ++ .++ .+..+++|+.|++++|.+.+. + .+..+++|++|++++|+
T Consensus 118 ~Ls~n~i~~~~~~~l-~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~-~-~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 118 DISHSAHDDSILTKI-NTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDY-R-GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp ECCSSBCBGGGHHHH-TTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCC-T-TGGGCSSCCEEEECBC-
T ss_pred EecCCccCcHhHHHH-hhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcCh-H-HhccCCCCCEEEeeCcc
Confidence 999999985444444 789999999999998 65 334 688899999999999998753 3 67789999999999999
Q ss_pred ccc
Q 037027 180 LQG 182 (205)
Q Consensus 180 l~~ 182 (205)
+.+
T Consensus 193 i~~ 195 (197)
T 4ezg_A 193 IGG 195 (197)
T ss_dssp ---
T ss_pred cCC
Confidence 863
No 92
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.75 E-value=6.9e-19 Score=131.90 Aligned_cols=176 Identities=23% Similarity=0.186 Sum_probs=112.0
Q ss_pred eEEEEEecCCcccccCCCCCCCCCCCcEEEeecCcceeecCccccCCCCccEEEecCcccccCCCccccCCCCccEEEcc
Q 037027 24 RVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLS 103 (205)
Q Consensus 24 ~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 103 (205)
.++..+++.+.+.......+..+++|+.|++++|.+....+..+..+++|++|++++|.++...+ +..+++|++|+++
T Consensus 11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls 88 (317)
T 3o53_A 11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLN 88 (317)
T ss_dssp EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECC
T ss_pred ceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECc
Confidence 56666777776654444555667899999999999997777789999999999999999874433 7788899999999
Q ss_pred cccCCcccCc----------------ccccCCCCcceeeecccccccCCCCCcCCCCcceEEEeecceeecccCccc-cc
Q 037027 104 YNALSGEIPA----------------NICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEI-GN 166 (205)
Q Consensus 104 ~~~~~~~~~~----------------~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~-~~ 166 (205)
+|.+. .++. .....+++|+.+++++|.+++..+..+..+++|+.|++++|.+.+..+..+ ..
T Consensus 89 ~n~l~-~l~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 167 (317)
T 3o53_A 89 NNYVQ-ELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAAS 167 (317)
T ss_dssp SSEEE-EEEECTTCCEEECCSSCCSEEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGG
T ss_pred CCccc-cccCCCCcCEEECCCCccCCcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhc
Confidence 98775 2221 001223445555555555554334445555556666666665554444333 24
Q ss_pred cCCceEEEeecccccccCchhccCCCCCcEEeccCCcC
Q 037027 167 VTKLKELYLVRNRLQGEIPRELSNLAELELMSLFDNEL 204 (205)
Q Consensus 167 ~~~L~~l~l~~~~l~~~~~~~l~~~~~L~~l~l~~n~l 204 (205)
+++|++|++++|.+++. + ....+++|+.|++++|.+
T Consensus 168 l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l 203 (317)
T 3o53_A 168 SDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKL 203 (317)
T ss_dssp TTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCC
T ss_pred cCcCCEEECCCCcCccc-c-cccccccCCEEECCCCcC
Confidence 55666666666665533 1 222356666666666654
No 93
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.74 E-value=3e-18 Score=125.18 Aligned_cols=145 Identities=21% Similarity=0.263 Sum_probs=69.7
Q ss_pred ceEEEEEecCCcccccCCCCCCCCCCCcEEEeecCcceeecCccccCCCCccEEEecCcccccCCCccccCCCCccEEEc
Q 037027 23 HRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDL 102 (205)
Q Consensus 23 ~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 102 (205)
++++.|+++++.+. .++ .++.+++|+.|++++|.+.+..+ +..+++|++|++++|.++. .+.. .. .+|++|++
T Consensus 41 ~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~-l~~~-~~-~~L~~L~L 113 (263)
T 1xeu_A 41 SGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKN-LNGI-PS-ACLSRLFL 113 (263)
T ss_dssp TTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSC-CTTC-CC-SSCCEEEC
T ss_pred CcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccCC-cCcc-cc-CcccEEEc
Confidence 34555555555544 222 34455555555555555543222 4555555555555555542 2211 11 45555555
Q ss_pred ccccCCcccCcccccCCCCcceeeecccccccCCCCCcCCCCcceEEEeecceeecccCccccccCCceEEEeeccccc
Q 037027 103 SYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQ 181 (205)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~ 181 (205)
++|.+. .++ . +..+++|+.|++++|.+++. +.+..+++|+.|++++|.+.+. ..+..+++|+.|++++|.+.
T Consensus 114 ~~N~l~-~~~-~-l~~l~~L~~L~Ls~N~i~~~--~~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~ 185 (263)
T 1xeu_A 114 DNNELR-DTD-S-LIHLKNLEILSIRNNKLKSI--VMLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCV 185 (263)
T ss_dssp CSSCCS-BSG-G-GTTCTTCCEEECTTSCCCBC--GGGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEE
T ss_pred cCCccC-CCh-h-hcCcccccEEECCCCcCCCC--hHHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCccc
Confidence 555554 222 1 24455555555555555432 2344455555555555555433 33444555555555555554
No 94
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.73 E-value=3.5e-20 Score=142.45 Aligned_cols=134 Identities=18% Similarity=0.210 Sum_probs=66.3
Q ss_pred CCccEEEecCccccc-CCC---ccccCCCCccEEEcccccCCcc----cCcccccCCCCcceeeecccccc----cCCCC
Q 037027 71 HTLKYVDLRGNQLSG-AFP---SFIFNKSSLQDLDLSYNALSGE----IPANICSNLPFLEYISLSQNMFH----GGIPS 138 (205)
Q Consensus 71 ~~L~~L~l~~~~~~~-~~~---~~l~~l~~L~~L~l~~~~~~~~----~~~~~~~~~~~L~~l~l~~~~~~----~~~~~ 138 (205)
++|++|++.+|.++. ..+ ..+..+++|++|++++|.+... +....+..+++|+.|++++|.++ ..++.
T Consensus 159 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~ 238 (386)
T 2ca6_A 159 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI 238 (386)
T ss_dssp CCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH
T ss_pred CCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHH
Confidence 455555555554431 111 1233445555555555554311 11111234555666666666553 23344
Q ss_pred CcCCCCcceEEEeecceeecc----cCccc--cccCCceEEEeecccccc----cCchhc-cCCCCCcEEeccCCcC
Q 037027 139 ALSKCTYLQILGLSFNDFSGA----IPKEI--GNVTKLKELYLVRNRLQG----EIPREL-SNLAELELMSLFDNEL 204 (205)
Q Consensus 139 ~~~~~~~L~~l~l~~~~~~~~----~~~~~--~~~~~L~~l~l~~~~l~~----~~~~~l-~~~~~L~~l~l~~n~l 204 (205)
.+..+++|+.|++++|.+.+. ++..+ ..+++|++|++++|.+++ .++..+ .++++|++|++++|++
T Consensus 239 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l 315 (386)
T 2ca6_A 239 ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF 315 (386)
T ss_dssp HGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBS
T ss_pred HHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcC
Confidence 455555666666666655433 22333 225666666666666664 244444 4456666666666655
No 95
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.73 E-value=5.8e-18 Score=133.78 Aligned_cols=157 Identities=23% Similarity=0.182 Sum_probs=99.7
Q ss_pred CCCCCCCcEEEeecCcceeecCccccCCCCccEEEecCcccccCCCccccCCCCccEEEcccccCCcccCcc--------
Q 037027 43 LGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPAN-------- 114 (205)
Q Consensus 43 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-------- 114 (205)
...+++|+.|++++|.+....+..|..+++|++|++++|.++...+ +..+++|++|++++|.+. .++..
T Consensus 30 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~-~l~~~~~L~~L~L 106 (487)
T 3oja_A 30 RQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQ-ELLVGPSIETLHA 106 (487)
T ss_dssp STTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEE-EEEECTTCCEEEC
T ss_pred cccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCC-CCCCCCCcCEEEC
Confidence 3445689999999999997777889999999999999999875443 778889999999988775 22210
Q ss_pred --------cccCCCCcceeeecccccccCCCCCcCCCCcceEEEeecceeecccCcccc-ccCCceEEEeecccccccCc
Q 037027 115 --------ICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIG-NVTKLKELYLVRNRLQGEIP 185 (205)
Q Consensus 115 --------~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~-~~~~L~~l~l~~~~l~~~~~ 185 (205)
....+++|+.|++++|.+++..+..+..+++|+.|++++|.+.+..|..+. .+++|++|++++|.+++. +
T Consensus 107 ~~N~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~ 185 (487)
T 3oja_A 107 ANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K 185 (487)
T ss_dssp CSSCCCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E
T ss_pred cCCcCCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-c
Confidence 011234455555555555544444455555555555555555544444443 455555556555555533 1
Q ss_pred hhccCCCCCcEEeccCCcC
Q 037027 186 RELSNLAELELMSLFDNEL 204 (205)
Q Consensus 186 ~~l~~~~~L~~l~l~~n~l 204 (205)
....+++|+.|++++|.+
T Consensus 186 -~~~~l~~L~~L~Ls~N~l 203 (487)
T 3oja_A 186 -GQVVFAKLKTLDLSSNKL 203 (487)
T ss_dssp -CCCCCTTCCEEECCSSCC
T ss_pred -ccccCCCCCEEECCCCCC
Confidence 122355666666666654
No 96
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.73 E-value=8.8e-17 Score=126.06 Aligned_cols=165 Identities=19% Similarity=0.255 Sum_probs=91.0
Q ss_pred CceEEEEEecCCcccccCCCCCCCCCCCcEEEeecCcceeecCccccCCCCccEEEecCcccccCCCccccCCCCccEEE
Q 037027 22 SHRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLD 101 (205)
Q Consensus 22 ~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 101 (205)
.++++.|+++++.+.+. | .++.+++|+.|++++|.+... .+..+++|++|++++|.++.. + +..+++|++|+
T Consensus 41 l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~---~~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~ 112 (457)
T 3bz5_A 41 LATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL---DLSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLN 112 (457)
T ss_dssp HTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEE
T ss_pred cCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE---ccccCCCCCEEECcCCCCcee-e--cCCCCcCCEEE
Confidence 34566666666666532 3 355666666666666665532 155556666666666655532 2 44555666666
Q ss_pred cccccCCcccCcccccCCCCcceeeecccccccCC-------------------CCCcCCCCcceEEEeecceeecccCc
Q 037027 102 LSYNALSGEIPANICSNLPFLEYISLSQNMFHGGI-------------------PSALSKCTYLQILGLSFNDFSGAIPK 162 (205)
Q Consensus 102 l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~-------------------~~~~~~~~~L~~l~l~~~~~~~~~~~ 162 (205)
+++|.+. .++ +..+++|+.+++++|.+++.. .-.+..+++|+.|++++|.+.+ .+
T Consensus 113 L~~N~l~-~l~---~~~l~~L~~L~l~~N~l~~l~l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~-l~- 186 (457)
T 3bz5_A 113 CDTNKLT-KLD---VSQNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITE-LD- 186 (457)
T ss_dssp CCSSCCS-CCC---CTTCTTCCEEECTTSCCSCCCCTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCC-CC-
T ss_pred CCCCcCC-eec---CCCCCcCCEEECCCCccceeccccCCcCCEEECCCCCcccccccccCCcCCEEECCCCccce-ec-
Confidence 6666554 232 244555555555555554310 0023445555666666665543 22
Q ss_pred cccccCCceEEEeecccccccCchhccCCCCCcEEeccCCcC
Q 037027 163 EIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFDNEL 204 (205)
Q Consensus 163 ~~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~L~~l~l~~n~l 204 (205)
+..+++|++|++++|.+++. .+..+++|+.|++++|.+
T Consensus 187 -l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l 224 (457)
T 3bz5_A 187 -VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKL 224 (457)
T ss_dssp -CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCC
T ss_pred -cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcc
Confidence 45566666666666666633 256667777777777765
No 97
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.73 E-value=5.4e-17 Score=113.09 Aligned_cols=128 Identities=20% Similarity=0.208 Sum_probs=76.6
Q ss_pred cEEEeecCcceeecCccccCCCCccEEEecCcccccCCCc-cccCCCCccEEEcccccCCcccCcccccCCCCcceeeec
Q 037027 50 QSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPS-FIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLS 128 (205)
Q Consensus 50 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~ 128 (205)
+.++++++.+. .++..+. .++++|++.+|.+....+. .+..+++|++|++++|.+. .+....+..+++|+.|+++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls 86 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT-GIEPNAFEGASHIQELQLG 86 (192)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCC-CBCTTTTTTCTTCCEEECC
T ss_pred CEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCC-CcCHhHcCCcccCCEEECC
Confidence 56666666665 3333322 2666677777666543332 2556666666666666665 3333333566666666666
Q ss_pred ccccccCCCCCcCCCCcceEEEeecceeecccCccccccCCceEEEeeccccc
Q 037027 129 QNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQ 181 (205)
Q Consensus 129 ~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~ 181 (205)
+|.+++..+..+..+++|+.|++++|.+.+..+..+..+++|+++++++|.+.
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred CCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 66666555555666666666666666666555666666666666666666665
No 98
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.73 E-value=1.6e-16 Score=124.68 Aligned_cols=164 Identities=20% Similarity=0.222 Sum_probs=113.8
Q ss_pred CCceEEEEEecCCcccccCCCCCCCCCCCcEEEeecCcceeecCccccCCCCccEEEecCcccccCCCccccCCCCccEE
Q 037027 21 HSHRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDL 100 (205)
Q Consensus 21 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L 100 (205)
..++++.|++++|.+.+. + ++.+++|+.|++++|.+... .+..+++|++|++++|.++. .+ +..+++|++|
T Consensus 62 ~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~---~~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L 132 (457)
T 3bz5_A 62 KLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL---DVTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYL 132 (457)
T ss_dssp GCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC---CCTTCTTCCEEECCSSCCSC-CC--CTTCTTCCEE
T ss_pred ccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee---ecCCCCcCCEEECCCCcCCe-ec--CCCCCcCCEE
Confidence 445666677776666542 2 55666666666666666532 25556666666666665553 22 4445555555
Q ss_pred EcccccCCc---------------------ccCcccccCCCCcceeeecccccccCCCCCcCCCCcceEEEeecceeecc
Q 037027 101 DLSYNALSG---------------------EIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGA 159 (205)
Q Consensus 101 ~l~~~~~~~---------------------~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~ 159 (205)
++++|.+.+ .+ . +..++.|+.+++++|.+++ ++ +..+++|+.|++++|.+.+.
T Consensus 133 ~l~~N~l~~l~l~~l~~L~~L~l~~n~~~~~~--~-~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~ 206 (457)
T 3bz5_A 133 NCARNTLTEIDVSHNTQLTELDCHLNKKITKL--D-VTPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL 206 (457)
T ss_dssp ECTTSCCSCCCCTTCTTCCEEECTTCSCCCCC--C-CTTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC
T ss_pred ECCCCccceeccccCCcCCEEECCCCCccccc--c-cccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCee
Confidence 555554432 22 1 2456788888888888875 33 77889999999999998754
Q ss_pred cCccccccCCceEEEeecccccccCchhccCCCCCcEEeccCCcCC
Q 037027 160 IPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFDNELQ 205 (205)
Q Consensus 160 ~~~~~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~L~~l~l~~n~l~ 205 (205)
.+..+++|++|++++|++++ +| +..+++|+.|++++|+++
T Consensus 207 ---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~ 246 (457)
T 3bz5_A 207 ---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLT 246 (457)
T ss_dssp ---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCS
T ss_pred ---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCC
Confidence 37789999999999999996 55 889999999999999874
No 99
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.72 E-value=1.2e-16 Score=128.03 Aligned_cols=177 Identities=24% Similarity=0.379 Sum_probs=107.5
Q ss_pred CCCCCCCC-----cccee-eecCCCceEEEEEecCCcccccCCCCCCCCCCCcEEEeecCcceeecCccccCCCCccEEE
Q 037027 4 WNTSSPVC-----NWTGV-TCDVHSHRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVD 77 (205)
Q Consensus 4 ~~~~~~~c-----~~~~~-~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 77 (205)
|.....+| .|.++ .|.. .+++.|+++++.+.+ +|..+ +++|+.|++++|.+. .++ ..+++|++|+
T Consensus 36 W~~~~~~~~~~~~~~~~l~~C~~--~~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~ 106 (571)
T 3cvr_A 36 WEKQALPGENRNEAVSLLKECLI--NQFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLD 106 (571)
T ss_dssp HHTTCCTTCCHHHHHHHHHHHHH--TTCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEE
T ss_pred HhccCCccccccchhhhcccccc--CCccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEE
Confidence 66666667 46665 4532 256677777777664 44433 255666666666655 233 2345555555
Q ss_pred ecCcccccCCCcccc------------------CCCCccEEEcccccCCcccCcccccCCCCcceeeecccccccCCCCC
Q 037027 78 LRGNQLSGAFPSFIF------------------NKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSA 139 (205)
Q Consensus 78 l~~~~~~~~~~~~l~------------------~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~ 139 (205)
+++|.++. +|. +. .+++|++|++++|.++ .++. .+++|+.|++++|.+++ +|.
T Consensus 107 Ls~N~l~~-ip~-l~~~L~~L~Ls~N~l~~lp~~l~~L~~L~Ls~N~l~-~lp~----~l~~L~~L~Ls~N~L~~-lp~- 177 (571)
T 3cvr_A 107 ACDNRLST-LPE-LPASLKHLDVDNNQLTMLPELPALLEYINADNNQLT-MLPE----LPTSLEVLSVRNNQLTF-LPE- 177 (571)
T ss_dssp CCSSCCSC-CCC-CCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCSC-CCC-
T ss_pred ccCCCCCC-cch-hhcCCCEEECCCCcCCCCCCcCccccEEeCCCCccC-cCCC----cCCCcCEEECCCCCCCC-cch-
Confidence 55555542 332 22 2345555555555554 2332 34567777777777764 444
Q ss_pred cCCCCcceEEEeecceeecccCccccccCCc-------eEEEeecccccccCchhccCCCCCcEEeccCCcCC
Q 037027 140 LSKCTYLQILGLSFNDFSGAIPKEIGNVTKL-------KELYLVRNRLQGEIPRELSNLAELELMSLFDNELQ 205 (205)
Q Consensus 140 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L-------~~l~l~~~~l~~~~~~~l~~~~~L~~l~l~~n~l~ 205 (205)
+. ++|+.|++++|.+. .+|. +.. +| ++|++++|.++ .+|..+..+++|+.|++++|+++
T Consensus 178 l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~ 243 (571)
T 3cvr_A 178 LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLS 243 (571)
T ss_dssp CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCC
T ss_pred hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCC
Confidence 43 67888888888776 4444 432 66 88899999888 56777777999999999999874
No 100
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.72 E-value=4e-19 Score=135.53 Aligned_cols=182 Identities=23% Similarity=0.193 Sum_probs=103.2
Q ss_pred ceEEEEEecCCcccccCC----CCCCCCC-CCcEEEeecCcceeecCccccCC-----CCccEEEecCcccccCCCcc--
Q 037027 23 HRVTVFNVSGLNLTGTIP----SQLGNLS-SLQSLNLSFNRLSGSIPSATFIT-----HTLKYVDLRGNQLSGAFPSF-- 90 (205)
Q Consensus 23 ~~l~~l~l~~~~~~~~~~----~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~l-----~~L~~L~l~~~~~~~~~~~~-- 90 (205)
++++.|++++|.+....+ ..+.+++ +|+.|++++|.+.+..+..+..+ ++|++|++++|.++...+..
T Consensus 22 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~ 101 (362)
T 3goz_A 22 HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELV 101 (362)
T ss_dssp TTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHH
T ss_pred CCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHH
Confidence 347777777777765444 5556666 67777777777765444444443 67777777777776444332
Q ss_pred --ccCC-CCccEEEcccccCCcccCccc---ccC-CCCcceeeecccccccCCC----CCcCCCC-cceEEEeecceeec
Q 037027 91 --IFNK-SSLQDLDLSYNALSGEIPANI---CSN-LPFLEYISLSQNMFHGGIP----SALSKCT-YLQILGLSFNDFSG 158 (205)
Q Consensus 91 --l~~l-~~L~~L~l~~~~~~~~~~~~~---~~~-~~~L~~l~l~~~~~~~~~~----~~~~~~~-~L~~l~l~~~~~~~ 158 (205)
+..+ ++|++|++++|.+.+.....+ +.. ..+|++|++++|.+++... ..+...+ +|+.|++++|.+.+
T Consensus 102 ~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~ 181 (362)
T 3goz_A 102 KTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLAS 181 (362)
T ss_dssp HHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGG
T ss_pred HHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCch
Confidence 2333 667777777777653222221 122 2467777777776653222 2223333 66677777766654
Q ss_pred ccCccc----ccc-CCceEEEeeccccccc----CchhccC-CCCCcEEeccCCcC
Q 037027 159 AIPKEI----GNV-TKLKELYLVRNRLQGE----IPRELSN-LAELELMSLFDNEL 204 (205)
Q Consensus 159 ~~~~~~----~~~-~~L~~l~l~~~~l~~~----~~~~l~~-~~~L~~l~l~~n~l 204 (205)
..+..+ ..+ ++|++|++++|.+.+. ++..+.. .++|++|++++|.+
T Consensus 182 ~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l 237 (362)
T 3goz_A 182 KNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCL 237 (362)
T ss_dssp SCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCC
T ss_pred hhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCC
Confidence 443322 222 4666666666666642 2333333 34666666666655
No 101
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.72 E-value=3.6e-17 Score=130.96 Aligned_cols=134 Identities=25% Similarity=0.360 Sum_probs=97.6
Q ss_pred CCcEEEeecCcceeecCccccCCCCccEEEecCcccccCCCccccCCCCccEEEcccccCCcccCcccccCCCCcceeee
Q 037027 48 SLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISL 127 (205)
Q Consensus 48 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l 127 (205)
+++.|+++++.+.. ++..+ .++|++|++++|.++ .+| ..+++|++|++++|.++ .++. + .. +|+.|++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~-~ip~-l-~~--~L~~L~L 127 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLS-TLPE-L-PA--SLKHLDV 127 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCS-CCCC-C-CT--TCCEEEC
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCC-Ccch-h-hc--CCCEEEC
Confidence 79999999999985 55544 378999999999998 555 34689999999999997 4665 4 32 7888888
Q ss_pred cccccccCCCCCcCCCCcceEEEeecceeecccCccccccCCceEEEeecccccccCchhccCCCCCcEEeccCCcCC
Q 037027 128 SQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFDNELQ 205 (205)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~L~~l~l~~n~l~ 205 (205)
++|.+++ +|. .+++|+.|++++|.+.+ +|. .+++|++|++++|.+++ +|. +. ++|+.|++++|.|+
T Consensus 128 s~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~ 193 (571)
T 3cvr_A 128 DNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE 193 (571)
T ss_dssp CSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS
T ss_pred CCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC
Confidence 8888875 444 46777788888777764 343 35677777777777764 444 44 66777777776653
No 102
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.72 E-value=6e-17 Score=119.92 Aligned_cols=149 Identities=23% Similarity=0.283 Sum_probs=127.0
Q ss_pred CCCCCCcEEEeecCcceeecCccccCCCCccEEEecCcccccCCCccccCCCCccEEEcccccCCcccCcccccCCCCcc
Q 037027 44 GNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLE 123 (205)
Q Consensus 44 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 123 (205)
+.+++|+.|++.++.+... ..+..+++|++|++++|.++...+ +..+++|++|++++|.+. .++. +..+++|+
T Consensus 43 ~~l~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~-~~~~--l~~l~~L~ 115 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVK-DLSS--LKDLKKLK 115 (291)
T ss_dssp HHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CGGG--GTTCTTCC
T ss_pred hhcCcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCC-CChh--hccCCCCC
Confidence 4578899999999998743 347889999999999999985433 788999999999999997 4443 47899999
Q ss_pred eeeecccccccCCCCCcCCCCcceEEEeecceeecccCccccccCCceEEEeecccccccCchhccCCCCCcEEeccCCc
Q 037027 124 YISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFDNE 203 (205)
Q Consensus 124 ~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~L~~l~l~~n~ 203 (205)
.|++++|.+++. +.+..+++|+.|++++|.+.+. ..+..+++|++|++++|.+++..+ +..+++|+.|++++|.
T Consensus 116 ~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~ 189 (291)
T 1h6t_A 116 SLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNH 189 (291)
T ss_dssp EEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred EEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCc
Confidence 999999999753 5678899999999999998754 577889999999999999995544 8999999999999998
Q ss_pred CC
Q 037027 204 LQ 205 (205)
Q Consensus 204 l~ 205 (205)
++
T Consensus 190 i~ 191 (291)
T 1h6t_A 190 IS 191 (291)
T ss_dssp CC
T ss_pred CC
Confidence 74
No 103
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.72 E-value=3.6e-19 Score=136.86 Aligned_cols=110 Identities=22% Similarity=0.255 Sum_probs=57.7
Q ss_pred CCccEEEcccccCCcccCc---ccccCCCCcceeeeccccccc-----CCCCCcCCCCcceEEEeecceee----cccCc
Q 037027 95 SSLQDLDLSYNALSGEIPA---NICSNLPFLEYISLSQNMFHG-----GIPSALSKCTYLQILGLSFNDFS----GAIPK 162 (205)
Q Consensus 95 ~~L~~L~l~~~~~~~~~~~---~~~~~~~~L~~l~l~~~~~~~-----~~~~~~~~~~~L~~l~l~~~~~~----~~~~~ 162 (205)
++|++|++++|.+.+.... ..+..+++|++|++++|.++. ..+..+..+++|+.|++++|.+. ..++.
T Consensus 159 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~ 238 (386)
T 2ca6_A 159 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI 238 (386)
T ss_dssp CCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH
T ss_pred CCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHH
Confidence 4555555555554311111 111344556666666665542 12224555666666666666653 23444
Q ss_pred cccccCCceEEEeeccccccc----CchhccC--CCCCcEEeccCCcC
Q 037027 163 EIGNVTKLKELYLVRNRLQGE----IPRELSN--LAELELMSLFDNEL 204 (205)
Q Consensus 163 ~~~~~~~L~~l~l~~~~l~~~----~~~~l~~--~~~L~~l~l~~n~l 204 (205)
.+..+++|++|++++|.+++. ++..+.. +++|+.|++++|.+
T Consensus 239 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i 286 (386)
T 2ca6_A 239 ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEI 286 (386)
T ss_dssp HGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCC
T ss_pred HHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcC
Confidence 555566666666666666543 3444432 66666666666655
No 104
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.71 E-value=7.6e-17 Score=130.16 Aligned_cols=154 Identities=28% Similarity=0.270 Sum_probs=129.6
Q ss_pred cCCCceEEEEEecCCcccccCCCCCCCCCCCcEEEeecCcceeecCccccCCCCccEEEecCcccccCCCccccCCCCcc
Q 037027 19 DVHSHRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQ 98 (205)
Q Consensus 19 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 98 (205)
...+++|+.|++++|.+.+..+ +..+++|+.|++++|.+.. ...+..+++|+.|++.+|.+... ..+..+++|+
T Consensus 61 l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~--l~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~ 134 (605)
T 1m9s_A 61 IQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD--LSSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLE 134 (605)
T ss_dssp GGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC--CTTSTTCTTCCEEECTTSCCCCC--GGGGGCTTCS
T ss_pred HccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC--ChhhccCCCCCEEEecCCCCCCC--ccccCCCccC
Confidence 4466789999999999885444 8899999999999999984 34688999999999999998743 4577899999
Q ss_pred EEEcccccCCcccCcccccCCCCcceeeecccccccCCCCCcCCCCcceEEEeecceeecccCccccccCCceEEEeecc
Q 037027 99 DLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRN 178 (205)
Q Consensus 99 ~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~ 178 (205)
.|++++|.+. .+ . .+..+++|+.|++++|.+.+..+ +..+++|+.|++++|.+.+. ..+..+++|+.|++++|
T Consensus 135 ~L~Ls~N~l~-~l-~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N 207 (605)
T 1m9s_A 135 SLYLGNNKIT-DI-T-VLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQ 207 (605)
T ss_dssp EEECCSSCCC-CC-G-GGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSE
T ss_pred EEECCCCccC-Cc-h-hhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCC
Confidence 9999999997 44 3 34789999999999999986544 88999999999999998754 46788999999999999
Q ss_pred cccccCc
Q 037027 179 RLQGEIP 185 (205)
Q Consensus 179 ~l~~~~~ 185 (205)
.+.+...
T Consensus 208 ~l~~~p~ 214 (605)
T 1m9s_A 208 ECLNKPI 214 (605)
T ss_dssp EEECCCC
T ss_pred cCcCCcc
Confidence 9885433
No 105
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.70 E-value=6.6e-17 Score=110.22 Aligned_cols=132 Identities=22% Similarity=0.195 Sum_probs=66.0
Q ss_pred CCCcEEEeecCcce-eecCccccCCCCccEEEecCcccccCCCccccCCCCccEEEcccccCCcccCcccccCCCCccee
Q 037027 47 SSLQSLNLSFNRLS-GSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYI 125 (205)
Q Consensus 47 ~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l 125 (205)
++++.|++++|.+. ...+..+..+++|++|++.+|.+... ..+..+++|++|++++|.+.+.++. .+..+++|+.|
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L 100 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDM-LAEKLPNLTHL 100 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCH-HHHHCTTCCEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHH-HHhhCCCCCEE
Confidence 45666666666655 23444455556666666666655532 4444555556666665555422222 22345555555
Q ss_pred eecccccccCCC-CCcCCCCcceEEEeecceeecccC---ccccccCCceEEEeeccccc
Q 037027 126 SLSQNMFHGGIP-SALSKCTYLQILGLSFNDFSGAIP---KEIGNVTKLKELYLVRNRLQ 181 (205)
Q Consensus 126 ~l~~~~~~~~~~-~~~~~~~~L~~l~l~~~~~~~~~~---~~~~~~~~L~~l~l~~~~l~ 181 (205)
++++|.+++... ..+..+++|+.|++++|.+.+..+ ..+..+++|++|++++|.+.
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 555555543211 344445555555555555443222 23444555555555555444
No 106
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.70 E-value=8.7e-19 Score=133.65 Aligned_cols=178 Identities=21% Similarity=0.194 Sum_probs=136.7
Q ss_pred EEecCCcccccCCCCCCCCCCCcEEEeecCcceeecC----ccccCCC-CccEEEecCcccccCCCccccCC-----CCc
Q 037027 28 FNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIP----SATFITH-TLKYVDLRGNQLSGAFPSFIFNK-----SSL 97 (205)
Q Consensus 28 l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~----~~~~~l~-~L~~L~l~~~~~~~~~~~~l~~l-----~~L 97 (205)
+.++++++++.+|+.+...++|+.|++++|.+.+..+ ..+..++ +|++|++++|.+....+..+..+ ++|
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 5778888887778777777789999999999986555 6777888 89999999999986656655553 899
Q ss_pred cEEEcccccCCcccCccc---ccCC-CCcceeeecccccccCCCCC----cCC-CCcceEEEeecceeecccCc----cc
Q 037027 98 QDLDLSYNALSGEIPANI---CSNL-PFLEYISLSQNMFHGGIPSA----LSK-CTYLQILGLSFNDFSGAIPK----EI 164 (205)
Q Consensus 98 ~~L~l~~~~~~~~~~~~~---~~~~-~~L~~l~l~~~~~~~~~~~~----~~~-~~~L~~l~l~~~~~~~~~~~----~~ 164 (205)
++|++++|.+.+..+..+ +... ++|+.|++++|.+++..+.. +.. .++|+.|++++|.+.+.... .+
T Consensus 83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l 162 (362)
T 3goz_A 83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQIL 162 (362)
T ss_dssp CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHH
T ss_pred cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHH
Confidence 999999999874333322 2334 78999999999998654433 333 36899999999998754333 33
Q ss_pred cccC-CceEEEeecccccccCchh----ccCC-CCCcEEeccCCcCC
Q 037027 165 GNVT-KLKELYLVRNRLQGEIPRE----LSNL-AELELMSLFDNELQ 205 (205)
Q Consensus 165 ~~~~-~L~~l~l~~~~l~~~~~~~----l~~~-~~L~~l~l~~n~l~ 205 (205)
...+ +|++|++++|.+++..+.. +..+ ++|++|++++|.++
T Consensus 163 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~ 209 (362)
T 3goz_A 163 AAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLG 209 (362)
T ss_dssp HTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGG
T ss_pred hcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCC
Confidence 4444 9999999999998766644 4455 59999999999874
No 107
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.68 E-value=5.7e-16 Score=107.96 Aligned_cols=127 Identities=25% Similarity=0.270 Sum_probs=81.8
Q ss_pred cEEEeecCcceeecCccccCCCCccEEEecCcccccCCCccccCCCCccEEEcccccCCcccCcccccCCCCcceeeecc
Q 037027 50 QSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQ 129 (205)
Q Consensus 50 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~ 129 (205)
+.++++++.+. .++..+ .+++++|++.+|.++ ..+..+..+.+|++|++++|.+. .++...+..++.|+.|++++
T Consensus 13 ~~l~~~~~~l~-~ip~~~--~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~Ls~ 87 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGI--PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQLLTLILSY 87 (193)
T ss_dssp TEEECTTSCCS-SCCSCC--CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCCC-cCCCCC--CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCC-EeCHhHccCCCCCCEEECCC
Confidence 45666666665 333322 246777777777766 45566666777777777777776 45544446667777777777
Q ss_pred cccccCCCCCcCCCCcceEEEeecceeecccCccccccCCceEEEeeccccc
Q 037027 130 NMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQ 181 (205)
Q Consensus 130 ~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~ 181 (205)
|.++...+..+..+++|+.|++++|.+....+..+..+++|+++++++|++.
T Consensus 88 N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 88 NRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp SCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 7776555556666777777777777766555555666677777777776664
No 108
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.67 E-value=1.3e-15 Score=104.65 Aligned_cols=131 Identities=20% Similarity=0.275 Sum_probs=91.3
Q ss_pred CcEEEeecCcceeecCccccCCCCccEEEecCcccccCCCccccCCCCccEEEcccccCCcccCcccccCCCCcceeeec
Q 037027 49 LQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLS 128 (205)
Q Consensus 49 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~ 128 (205)
.+.+++.++.+.. .+.. ..++|++|++.++.+....+..+..+.+|++|++++|.+. .++...+..+++|+.|+++
T Consensus 9 ~~~l~~~~~~l~~-~p~~--~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~ 84 (177)
T 2o6r_A 9 GTEIRCNSKGLTS-VPTG--IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQ-SLPDGVFDKLTKLTILYLH 84 (177)
T ss_dssp TTEEECCSSCCSS-CCTT--CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECC
T ss_pred CCEEEecCCCCcc-CCCC--CCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcce-EeChhHccCCCccCEEECC
Confidence 4567777776662 3322 2357888888888777555555667778888888888776 5555555677778888888
Q ss_pred ccccccCCCCCcCCCCcceEEEeecceeecccCccccccCCceEEEeeccccccc
Q 037027 129 QNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGE 183 (205)
Q Consensus 129 ~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~ 183 (205)
+|.+++..+..+..+++|+.|++++|.+.+..+..+..+++|+++++++|++...
T Consensus 85 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 139 (177)
T 2o6r_A 85 ENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 139 (177)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeecc
Confidence 8877755555667777888888888877755555556677888888888877643
No 109
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.67 E-value=4.2e-16 Score=113.75 Aligned_cols=165 Identities=21% Similarity=0.274 Sum_probs=134.5
Q ss_pred eEEEEEecCCcccccCCCCCCCCCCCcEEEeecCcceeecCccccCCCCccEEEecCcccccCCCccccCCCCccEEEcc
Q 037027 24 RVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLS 103 (205)
Q Consensus 24 ~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 103 (205)
++..++++++.+.... .+..+++|+.|++.+|.+.. .+ .+..+++|++|++++|.+....+ +..+++|++|+++
T Consensus 20 ~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~ 93 (263)
T 1xeu_A 20 NAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVN 93 (263)
T ss_dssp HHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECC
T ss_pred HHHHHHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECC
Confidence 4455667777665332 46778999999999999884 33 67889999999999999885433 7889999999999
Q ss_pred cccCCcccCcccccCCCCcceeeecccccccCCCCCcCCCCcceEEEeecceeecccCccccccCCceEEEeeccccccc
Q 037027 104 YNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGE 183 (205)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~ 183 (205)
+|.+. .++... . ++|+.|++++|.+++. +.+..+++|+.|++++|.+.+. + .+..+++|++|++++|.+++.
T Consensus 94 ~N~l~-~l~~~~--~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~ 165 (263)
T 1xeu_A 94 RNRLK-NLNGIP--S-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT 165 (263)
T ss_dssp SSCCS-CCTTCC--C-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC
T ss_pred CCccC-CcCccc--c-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch
Confidence 99997 555433 2 8899999999999753 4588899999999999998754 3 677899999999999999855
Q ss_pred CchhccCCCCCcEEeccCCcC
Q 037027 184 IPRELSNLAELELMSLFDNEL 204 (205)
Q Consensus 184 ~~~~l~~~~~L~~l~l~~n~l 204 (205)
..+..+++|+.|++++|++
T Consensus 166 --~~l~~l~~L~~L~l~~N~~ 184 (263)
T 1xeu_A 166 --GGLTRLKKVNWIDLTGQKC 184 (263)
T ss_dssp --TTSTTCCCCCEEEEEEEEE
T ss_pred --HHhccCCCCCEEeCCCCcc
Confidence 7788999999999999975
No 110
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.66 E-value=2.4e-16 Score=107.41 Aligned_cols=134 Identities=19% Similarity=0.129 Sum_probs=114.2
Q ss_pred CCceEEEEEecCCccc-ccCCCCCCCCCCCcEEEeecCcceeecCccccCCCCccEEEecCcccccCCCccccCCCCccE
Q 037027 21 HSHRVTVFNVSGLNLT-GTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQD 99 (205)
Q Consensus 21 ~~~~l~~l~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 99 (205)
..++++.|++++|.+. +.+|..+..+++|+.|++.+|.+... ..+..+++|++|++++|.+....+..+..+++|++
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 99 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH 99 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence 3468999999999987 67788889999999999999999854 77889999999999999998667777777999999
Q ss_pred EEcccccCCcccCc-ccccCCCCcceeeecccccccCCC---CCcCCCCcceEEEeecceee
Q 037027 100 LDLSYNALSGEIPA-NICSNLPFLEYISLSQNMFHGGIP---SALSKCTYLQILGLSFNDFS 157 (205)
Q Consensus 100 L~l~~~~~~~~~~~-~~~~~~~~L~~l~l~~~~~~~~~~---~~~~~~~~L~~l~l~~~~~~ 157 (205)
|++++|.+. .++. ..+..+++|+.+++++|.+++..+ ..+..+++|+.|++.+|...
T Consensus 100 L~Ls~N~l~-~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 100 LNLSGNKLK-DISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp EECBSSSCC-SSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred EeccCCccC-cchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 999999997 4442 344789999999999999985543 37889999999999999775
No 111
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.66 E-value=6.9e-19 Score=138.02 Aligned_cols=182 Identities=20% Similarity=0.221 Sum_probs=117.8
Q ss_pred eEEEEEecCCccccc----CCCCCCCCCCCcEEEeecCcceeec-----CccccCCCCccEEEecCcccccC----CCcc
Q 037027 24 RVTVFNVSGLNLTGT----IPSQLGNLSSLQSLNLSFNRLSGSI-----PSATFITHTLKYVDLRGNQLSGA----FPSF 90 (205)
Q Consensus 24 ~l~~l~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~-----~~~~~~l~~L~~L~l~~~~~~~~----~~~~ 90 (205)
+++.|++++|.++.. ++..+..+++|+.|++++|.+.+.. +..+..+++|++|++.+|.++.. ++..
T Consensus 200 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 279 (461)
T 1z7x_W 200 QLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRV 279 (461)
T ss_dssp CCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHH
T ss_pred CceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHH
Confidence 556666666655432 2444455667777777777665322 11222466777777777766532 3444
Q ss_pred ccCCCCccEEEcccccCCcccCc----ccccCCCCcceeeecccccccC----CCCCcCCCCcceEEEeecceeecccCc
Q 037027 91 IFNKSSLQDLDLSYNALSGEIPA----NICSNLPFLEYISLSQNMFHGG----IPSALSKCTYLQILGLSFNDFSGAIPK 162 (205)
Q Consensus 91 l~~l~~L~~L~l~~~~~~~~~~~----~~~~~~~~L~~l~l~~~~~~~~----~~~~~~~~~~L~~l~l~~~~~~~~~~~ 162 (205)
+..+++|++|++++|.+.+.... ......++|+.|++++|.+++. ++..+..+++|+.|++++|.+.+..+.
T Consensus 280 l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~ 359 (461)
T 1z7x_W 280 LRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVR 359 (461)
T ss_dssp HHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHH
T ss_pred HhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHH
Confidence 55577788888887776532221 1212235788888888877643 334456678889999999887654444
Q ss_pred cccc-----cCCceEEEeecccccc----cCchhccCCCCCcEEeccCCcCC
Q 037027 163 EIGN-----VTKLKELYLVRNRLQG----EIPRELSNLAELELMSLFDNELQ 205 (205)
Q Consensus 163 ~~~~-----~~~L~~l~l~~~~l~~----~~~~~l~~~~~L~~l~l~~n~l~ 205 (205)
.+.. .++|++|++++|.+++ .++..+..+++|++|++++|+++
T Consensus 360 ~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~ 411 (461)
T 1z7x_W 360 ELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG 411 (461)
T ss_dssp HHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCC
T ss_pred HHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCC
Confidence 3332 5689999999998885 56777888899999999999874
No 112
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.66 E-value=1.4e-16 Score=106.49 Aligned_cols=128 Identities=22% Similarity=0.245 Sum_probs=90.1
Q ss_pred CCccEEEecCcccc-cCCCccccCCCCccEEEcccccCCcccCcccccCCCCcceeeecccccccCCCCCcCCCCcceEE
Q 037027 71 HTLKYVDLRGNQLS-GAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQIL 149 (205)
Q Consensus 71 ~~L~~L~l~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l 149 (205)
++++.|++.+|.+. ...+..+..+++|++|++++|.+. .+ ..+..+++|+.+++++|.+++..|..+..+++|+.|
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~-~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCC-CC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCC-Cc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 55666666666665 345555566777777777777775 33 233667777777777777765455556667788888
Q ss_pred Eeecceeecc-cCccccccCCceEEEeecccccccCc---hhccCCCCCcEEeccC
Q 037027 150 GLSFNDFSGA-IPKEIGNVTKLKELYLVRNRLQGEIP---RELSNLAELELMSLFD 201 (205)
Q Consensus 150 ~l~~~~~~~~-~~~~~~~~~~L~~l~l~~~~l~~~~~---~~l~~~~~L~~l~l~~ 201 (205)
++++|.+.+. .+..+..+++|++|++++|.+++..+ ..+..+++|+.|++++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 8888877643 23667788889999999998886554 5788888999888764
No 113
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.65 E-value=5.8e-16 Score=125.27 Aligned_cols=158 Identities=27% Similarity=0.394 Sum_probs=100.0
Q ss_pred CCCCCCCCccceee------ecCCCceEEEEEecCCcccccCCCCCCCCCCCcEEEeecCcceeecCccccCCCCccEEE
Q 037027 4 WNTSSPVCNWTGVT------CDVHSHRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVD 77 (205)
Q Consensus 4 ~~~~~~~c~~~~~~------~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 77 (205)
|....++|.|.+.. |.+...+++.++++++.++ .+|..+. ++|+.|++++|.+. .++. .+++|++|+
T Consensus 15 W~~~~~~~~~~~r~~~~~~~~~c~~~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~ 87 (622)
T 3g06_A 15 WRRAAPAEESRGRAAVVQKMRACLNNGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLE 87 (622)
T ss_dssp HHHTCCGGGHHHHHHHHHHHHHHHHHCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEE
T ss_pred HHhcCCcchhccccccCcccccccCCCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEE
Confidence 76777888874422 2333446788888888887 5565554 68888888888877 3333 567888888
Q ss_pred ecCcccccCCCccccCCCCccEEEcccccCCcccCcccccCCCCcceeeecccccccCCCCCcCCCCcceEEEeecceee
Q 037027 78 LRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFS 157 (205)
Q Consensus 78 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~ 157 (205)
+++|.++ .+|. .+++|++|++++|.+. .++. .+++|+.|++++|.++. +|.. +++|+.|++++|.+.
T Consensus 88 Ls~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~l~~----~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~ 154 (622)
T 3g06_A 88 VSGNQLT-SLPV---LPPGLLELSIFSNPLT-HLPA----LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLA 154 (622)
T ss_dssp ECSCCCS-CCCC---CCTTCCEEEECSCCCC-CCCC----CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS
T ss_pred cCCCcCC-cCCC---CCCCCCEEECcCCcCC-CCCC----CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCC
Confidence 8888876 3443 4677888888888776 4443 34566666666666653 3332 255666666666554
Q ss_pred cccCc---cc--------------cccCCceEEEeecccccc
Q 037027 158 GAIPK---EI--------------GNVTKLKELYLVRNRLQG 182 (205)
Q Consensus 158 ~~~~~---~~--------------~~~~~L~~l~l~~~~l~~ 182 (205)
+ +|. .+ ..+++|+.|++++|.+++
T Consensus 155 ~-l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~l~~ 195 (622)
T 3g06_A 155 S-LPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLAS 195 (622)
T ss_dssp C-CCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSC
T ss_pred C-cCCccCCCCEEECCCCCCCCCcccCCCCcEEECCCCCCCC
Confidence 2 111 11 123667777777777763
No 114
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.65 E-value=1.3e-15 Score=114.56 Aligned_cols=103 Identities=17% Similarity=0.159 Sum_probs=69.6
Q ss_pred CCCccEEEcccccCCcccCcccccCCCCcceeeecccccccCCCCCcCCCCcce-EEEeecceeecccCccccccCCceE
Q 037027 94 KSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQ-ILGLSFNDFSGAIPKEIGNVTKLKE 172 (205)
Q Consensus 94 l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~-~l~l~~~~~~~~~~~~~~~~~~L~~ 172 (205)
+.+|+++++++|++. .++...|.++.+|+.+++..+ ++...+.+|..+++|+ .+++.+ .+....+..|..+++|++
T Consensus 225 ~~~L~~l~L~~n~i~-~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~ 301 (329)
T 3sb4_A 225 MPNLVSLDISKTNAT-TIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRY 301 (329)
T ss_dssp CTTCCEEECTTBCCC-EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEE
T ss_pred cCCCeEEECCCCCcc-eecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCE
Confidence 456777777776666 666666677777777777665 5545556677777777 777766 444455667777777777
Q ss_pred EEeecccccccCchhccCCCCCcEEec
Q 037027 173 LYLVRNRLQGEIPRELSNLAELELMSL 199 (205)
Q Consensus 173 l~l~~~~l~~~~~~~l~~~~~L~~l~l 199 (205)
+++..+.++.....+|.++++|+.++.
T Consensus 302 l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 302 VLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp EEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred EEeCCCccCccchhhhcCCcchhhhcc
Confidence 777777777566667777777777653
No 115
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.65 E-value=7e-15 Score=118.99 Aligned_cols=77 Identities=26% Similarity=0.299 Sum_probs=57.8
Q ss_pred CCcceeeecccccccCCCCCcCCCCcceEEEeecceeecccCccccccCCceEEEeecccccccCchhccCCCCCcEEec
Q 037027 120 PFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMSL 199 (205)
Q Consensus 120 ~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~L~~l~l 199 (205)
++|+.|++++|.+++ +| ..+++|+.|++++|.+. .+|. .+++|++|++++|.++ .+|..+..+++|+.|++
T Consensus 221 ~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L 291 (622)
T 3g06_A 221 SGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNL 291 (622)
T ss_dssp TTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEEC
T ss_pred CCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEe
Confidence 456666666666653 33 34467778888888776 3443 4678999999999998 77888999999999999
Q ss_pred cCCcCC
Q 037027 200 FDNELQ 205 (205)
Q Consensus 200 ~~n~l~ 205 (205)
++|+++
T Consensus 292 ~~N~l~ 297 (622)
T 3g06_A 292 EGNPLS 297 (622)
T ss_dssp CSCCCC
T ss_pred cCCCCC
Confidence 999874
No 116
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.64 E-value=2e-15 Score=105.11 Aligned_cols=130 Identities=25% Similarity=0.296 Sum_probs=110.3
Q ss_pred EEEEecCCcccccCCCCCCCCCCCcEEEeecCcceeecCc-cccCCCCccEEEecCcccccCCCccccCCCCccEEEccc
Q 037027 26 TVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPS-ATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSY 104 (205)
Q Consensus 26 ~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 104 (205)
+.++++++.+. .+|..+. .+++.|++.+|.+....+. .+..+++|++|++++|.++...+..+..+.+|++|++++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 35788888875 5666553 3899999999999855543 488999999999999999977788899999999999999
Q ss_pred ccCCcccCcccccCCCCcceeeecccccccCCCCCcCCCCcceEEEeecceeecc
Q 037027 105 NALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGA 159 (205)
Q Consensus 105 ~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~ 159 (205)
|.+. .++...+..+++|++|++++|.+++..+..+..+++|+.|++++|++...
T Consensus 88 N~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 141 (192)
T 1w8a_A 88 NKIK-EISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN 141 (192)
T ss_dssp CCCC-EECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred CcCC-ccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence 9998 55555558899999999999999988888999999999999999988643
No 117
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.63 E-value=4.4e-18 Score=133.49 Aligned_cols=181 Identities=23% Similarity=0.256 Sum_probs=99.3
Q ss_pred eEEEEEecCCcccc----cCCCCCCCCCCCcEEEeecCcceeecCccc-----cCCCCccEEEecCcccccCC----Ccc
Q 037027 24 RVTVFNVSGLNLTG----TIPSQLGNLSSLQSLNLSFNRLSGSIPSAT-----FITHTLKYVDLRGNQLSGAF----PSF 90 (205)
Q Consensus 24 ~l~~l~l~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-----~~l~~L~~L~l~~~~~~~~~----~~~ 90 (205)
+++.|++++|.+.. .++..+..+++|+.|++++|.+.+.....+ ...++|++|++.+|.++... +..
T Consensus 86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 165 (461)
T 1z7x_W 86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASV 165 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHH
T ss_pred ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHH
Confidence 46666666666552 235555666666666666666543222211 12345666666666555322 333
Q ss_pred ccCCCCccEEEcccccCCcccCcccc----cCCCCcceeeecccccccC----CCCCcCCCCcceEEEeecceeeccc--
Q 037027 91 IFNKSSLQDLDLSYNALSGEIPANIC----SNLPFLEYISLSQNMFHGG----IPSALSKCTYLQILGLSFNDFSGAI-- 160 (205)
Q Consensus 91 l~~l~~L~~L~l~~~~~~~~~~~~~~----~~~~~L~~l~l~~~~~~~~----~~~~~~~~~~L~~l~l~~~~~~~~~-- 160 (205)
+..+++|++|++++|.+.+.....+. ...++|+.|++++|.+++. ++..+..+++|+.|++++|.+.+..
T Consensus 166 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~ 245 (461)
T 1z7x_W 166 LRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMA 245 (461)
T ss_dssp HHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHH
T ss_pred HhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHH
Confidence 34456677777777665422222111 1234677777777766542 2344555667777777777664322
Q ss_pred ---CccccccCCceEEEeeccccccc----CchhccCCCCCcEEeccCCcC
Q 037027 161 ---PKEIGNVTKLKELYLVRNRLQGE----IPRELSNLAELELMSLFDNEL 204 (205)
Q Consensus 161 ---~~~~~~~~~L~~l~l~~~~l~~~----~~~~l~~~~~L~~l~l~~n~l 204 (205)
+.....+++|++|++++|.+++. ++..+..+++|++|++++|.+
T Consensus 246 ~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i 296 (461)
T 1z7x_W 246 ELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNEL 296 (461)
T ss_dssp HHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCC
T ss_pred HHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCC
Confidence 11222356777777777766643 345555666777777776654
No 118
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.63 E-value=1.2e-14 Score=113.96 Aligned_cols=139 Identities=24% Similarity=0.339 Sum_probs=73.4
Q ss_pred eEEEEEecCCcccccCCCCCCCCCCCcEEEeecCcceeecCccccCCCCccEEEecCcccccCCCccccCCCCccEEEcc
Q 037027 24 RVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLS 103 (205)
Q Consensus 24 ~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 103 (205)
+++.|++++|.+.+ +| .|+++++|+.|++++|.+.. .+.. ..+|++|++.+|.++. .+ .+..+++|++|+++
T Consensus 132 ~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~ 203 (454)
T 1jl5_A 132 LLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYAD 203 (454)
T ss_dssp TCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECC
T ss_pred CCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEECC
Confidence 55666666666553 44 36666666666666666552 2221 2356666666666553 33 35556666666666
Q ss_pred cccCCcccCcccccCCCCcceeeecccccccCCCCCcCCCCcceEEEeecceeecccCccccccCCceEEEeeccccc
Q 037027 104 YNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQ 181 (205)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~ 181 (205)
+|.+. .++. ..++|+.+++++|.+. .+| .+..+++|+.|++++|.+.+ .|.. .++|++|++++|.++
T Consensus 204 ~N~l~-~l~~----~~~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~ 270 (454)
T 1jl5_A 204 NNSLK-KLPD----LPLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLT 270 (454)
T ss_dssp SSCCS-SCCC----CCTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCS
T ss_pred CCcCC-cCCC----CcCcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCccc
Confidence 66554 2322 1235566666666555 333 25566666666666665543 2211 244444544444444
No 119
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.62 E-value=3.2e-16 Score=104.68 Aligned_cols=108 Identities=18% Similarity=0.187 Sum_probs=53.4
Q ss_pred ceEEEEEecCCccc-ccCCCCCCCCCCCcEEEeecCcceeecCccccCCCCccEEEecCcccccCCCccccCCCCccEEE
Q 037027 23 HRVTVFNVSGLNLT-GTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLD 101 (205)
Q Consensus 23 ~~l~~l~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 101 (205)
++++.|+++++.+. +.+|..+..+++|+.|++++|.+... ..+..+++|++|++++|.+....+..+..+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 35556666666655 44555555566666666666655532 4444555555555555555433344443455555555
Q ss_pred cccccCCcccC-cccccCCCCcceeeecccccc
Q 037027 102 LSYNALSGEIP-ANICSNLPFLEYISLSQNMFH 133 (205)
Q Consensus 102 l~~~~~~~~~~-~~~~~~~~~L~~l~l~~~~~~ 133 (205)
+++|.+. .++ ...+..+++|+.+++++|.++
T Consensus 95 ls~N~i~-~~~~~~~~~~l~~L~~L~l~~N~l~ 126 (149)
T 2je0_A 95 LSGNKIK-DLSTIEPLKKLENLKSLDLFNCEVT 126 (149)
T ss_dssp CTTSCCC-SHHHHGGGGGCTTCCEEECTTCGGG
T ss_pred CCCCcCC-ChHHHHHHhhCCCCCEEeCcCCccc
Confidence 5555544 211 011233444444444444444
No 120
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.62 E-value=1.3e-14 Score=113.71 Aligned_cols=159 Identities=28% Similarity=0.399 Sum_probs=80.8
Q ss_pred ceEEEEEecCCcccccCCCCCCCCCCCcEEEeecCcceeecCccccCCCCccEEEecCcccccCCCccccCCCCccEEEc
Q 037027 23 HRVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDL 102 (205)
Q Consensus 23 ~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 102 (205)
++++.|+++++.+.+ +|+. ..+|+.|++++|.+.. .+. ..++|++|++++|.++. .| .+..+.+|++|++
T Consensus 91 ~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~-l~~---~~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l 160 (454)
T 1jl5_A 91 PHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKA-LSD---LPPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDV 160 (454)
T ss_dssp TTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-CCS---CCTTCCEEECCSSCCSS-CC-CCTTCTTCCEEEC
T ss_pred CCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCc-ccC---CCCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEEC
Confidence 456677777766664 3432 2456666666665542 111 11456666666666653 34 3555666666666
Q ss_pred ccccCCcccCcccccCCCCcceeeecccccccCCCCCcCCCCcceEEEeecceeecccCccccccCCceEEEeecccccc
Q 037027 103 SYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQG 182 (205)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~ 182 (205)
++|.+. .++.. ..+|+++++++|.+++ +| .+..+++|+.|++++|.+.+ .|.. .++|++|++++|.++
T Consensus 161 ~~N~l~-~lp~~----~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~n~l~- 228 (454)
T 1jl5_A 161 DNNSLK-KLPDL----PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVAGNNILE- 228 (454)
T ss_dssp CSSCCS-CCCCC----CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-
T ss_pred CCCcCc-ccCCC----cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC---cCcccEEECcCCcCC-
Confidence 666655 33321 2356666666665553 23 35555555555555555542 2211 134555555555444
Q ss_pred cCchhccCCCCCcEEeccCCcC
Q 037027 183 EIPRELSNLAELELMSLFDNEL 204 (205)
Q Consensus 183 ~~~~~l~~~~~L~~l~l~~n~l 204 (205)
.+| .+..+++|++|++++|.+
T Consensus 229 ~lp-~~~~l~~L~~L~l~~N~l 249 (454)
T 1jl5_A 229 ELP-ELQNLPFLTTIYADNNLL 249 (454)
T ss_dssp SCC-CCTTCTTCCEEECCSSCC
T ss_pred ccc-ccCCCCCCCEEECCCCcC
Confidence 333 244444455555544443
No 121
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.62 E-value=7.4e-17 Score=132.96 Aligned_cols=159 Identities=24% Similarity=0.273 Sum_probs=87.6
Q ss_pred ceEEEEEecCCcccccCCCCCCCCCCCcEE-----EeecCcceeecCccccCCCCccEEEecCcccccCCCccccCCCCc
Q 037027 23 HRVTVFNVSGLNLTGTIPSQLGNLSSLQSL-----NLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSL 97 (205)
Q Consensus 23 ~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L-----~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L 97 (205)
++++.+++.++.+.. .+..+.....|+.+ ++..+.+. ..+..+..+..|+.|++++|.+. .++..+..+.+|
T Consensus 173 ~~~~~l~L~~n~~~~-~~~~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L 249 (727)
T 4b8c_D 173 PLTPKIELFANGKDE-ANQALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFL 249 (727)
T ss_dssp ---------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSC
T ss_pred CccceEEeeCCCCCc-chhhHhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCC
Confidence 467778887777653 23322222222222 22223333 34556777788888888888877 556556677888
Q ss_pred cEEEcccccCCcccCcccccCCCCcceeeecccccccCCCCCcCCCCcceEEEeecceeecccCccccccCCceEEEeec
Q 037027 98 QDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVR 177 (205)
Q Consensus 98 ~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~ 177 (205)
++|++++|.+. .++..+ ..+++|+.|++++|.++ .+|..+..+++|+.|++++|.+. .+|..+..+++|++|+|++
T Consensus 250 ~~L~Ls~N~l~-~lp~~~-~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~ 325 (727)
T 4b8c_D 250 TRLYLNGNSLT-ELPAEI-KNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEG 325 (727)
T ss_dssp SCCBCTTSCCS-CCCGGG-GGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTT
T ss_pred CEEEeeCCcCc-ccChhh-hCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCC
Confidence 88888888887 677655 67788888888888887 56777778888888888888776 5566677788888888888
Q ss_pred ccccccCchhc
Q 037027 178 NRLQGEIPREL 188 (205)
Q Consensus 178 ~~l~~~~~~~l 188 (205)
|.+.+.+|..+
T Consensus 326 N~l~~~~p~~~ 336 (727)
T 4b8c_D 326 NPLEKQFLKIL 336 (727)
T ss_dssp SCCCSHHHHHH
T ss_pred CccCCCChHHH
Confidence 88876555444
No 122
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.62 E-value=1.2e-14 Score=101.18 Aligned_cols=126 Identities=25% Similarity=0.276 Sum_probs=108.1
Q ss_pred EEEecCCcccccCCCCCCCCCCCcEEEeecCcceeecCccccCCCCccEEEecCcccccCCCccccCCCCccEEEccccc
Q 037027 27 VFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNA 106 (205)
Q Consensus 27 ~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 106 (205)
.++++++.+. .+|..+ .++++.|++++|.+. .++..+..+++|++|++++|.++...+..|..+.+|++|++++|.
T Consensus 14 ~l~~~~~~l~-~ip~~~--~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 14 VVRCSNKGLK-VLPKGI--PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp EEECTTSCCS-SCCSCC--CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEEcCCCCCC-cCCCCC--CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence 5778888776 556544 368999999999998 566889999999999999999997777788999999999999999
Q ss_pred CCcccCcccccCCCCcceeeecccccccCCCCCcCCCCcceEEEeecceee
Q 037027 107 LSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFS 157 (205)
Q Consensus 107 ~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~ 157 (205)
+. .++...+..+++|+.|++++|.++...+..+..+++|+.|++.+|++.
T Consensus 90 l~-~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 90 LR-CIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CC-BCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred cC-EeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 98 666655688999999999999998666667889999999999999875
No 123
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.61 E-value=4.9e-15 Score=112.43 Aligned_cols=173 Identities=19% Similarity=0.095 Sum_probs=121.1
Q ss_pred CCCceEEEEEecCCcccccC-CCCCCCCCCCcE-EEeecCcceeecCccccCCCCccEEEecCcccccCCCccccCCCCc
Q 037027 20 VHSHRVTVFNVSGLNLTGTI-PSQLGNLSSLQS-LNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSL 97 (205)
Q Consensus 20 ~~~~~l~~l~l~~~~~~~~~-~~~~~~~~~L~~-L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L 97 (205)
...++++.|++++|.+.+.+ +..|.++++++. +.+..|.+....+..|..+++|++|++.+|.+....+..+....++
T Consensus 51 ~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l 130 (350)
T 4ay9_X 51 SGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQK 130 (350)
T ss_dssp TTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSC
T ss_pred cCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchh
Confidence 45678999999999986554 456788888776 5667788887778889999999999999999875545455555667
Q ss_pred cEEEccc-ccCCcccCcccccCCC-CcceeeecccccccCCCCCcCCCCcceEEEeec-ceeecccCccccccCCceEEE
Q 037027 98 QDLDLSY-NALSGEIPANICSNLP-FLEYISLSQNMFHGGIPSALSKCTYLQILGLSF-NDFSGAIPKEIGNVTKLKELY 174 (205)
Q Consensus 98 ~~L~l~~-~~~~~~~~~~~~~~~~-~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~-~~~~~~~~~~~~~~~~L~~l~ 174 (205)
..+++.. +.+. .++...+..+. .++.+++++|.++...+..+ ...+++.+++.+ |.+....+..+..+++|++|+
T Consensus 131 ~~l~l~~~~~i~-~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f-~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~Ld 208 (350)
T 4ay9_X 131 VLLDIQDNINIH-TIERNSFVGLSFESVILWLNKNGIQEIHNSAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILD 208 (350)
T ss_dssp EEEEEESCTTCC-EECTTSSTTSBSSCEEEECCSSCCCEECTTSS-TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEE
T ss_pred hhhhhccccccc-cccccchhhcchhhhhhccccccccCCChhhc-cccchhHHhhccCCcccCCCHHHhccCcccchhh
Confidence 7777765 4554 55554444443 57788888888874433333 456788888875 455544445677888888888
Q ss_pred eecccccccCchhccCCCCC
Q 037027 175 LVRNRLQGEIPRELSNLAEL 194 (205)
Q Consensus 175 l~~~~l~~~~~~~l~~~~~L 194 (205)
+++|+++...+..+.++++|
T Consensus 209 Ls~N~l~~lp~~~~~~L~~L 228 (350)
T 4ay9_X 209 ISRTRIHSLPSYGLENLKKL 228 (350)
T ss_dssp CTTSCCCCCCSSSCTTCCEE
T ss_pred cCCCCcCccChhhhccchHh
Confidence 88888874444444444333
No 124
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.60 E-value=1.1e-14 Score=99.93 Aligned_cols=129 Identities=22% Similarity=0.217 Sum_probs=105.1
Q ss_pred EEEecCCcccccCCCCCCCCCCCcEEEeecCcceeecCccccCCCCccEEEecCcccccCCCccccCCCCccEEEccccc
Q 037027 27 VFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNA 106 (205)
Q Consensus 27 ~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 106 (205)
.++++++++. .+|..+ .++++.|++.+|.+....+..+..+++|++|++++|.++...+..+..+++|++|++++|.
T Consensus 11 ~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 87 (177)
T 2o6r_A 11 EIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK 87 (177)
T ss_dssp EEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCC
Confidence 3555566665 344333 3689999999999986666678899999999999999986666667889999999999999
Q ss_pred CCcccCcccccCCCCcceeeecccccccCCCCCcCCCCcceEEEeecceeecc
Q 037027 107 LSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGA 159 (205)
Q Consensus 107 ~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~ 159 (205)
+. .++...+..+++|+.+++++|.++...+..+..+++|+.|++++|++...
T Consensus 88 l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 139 (177)
T 2o6r_A 88 LQ-SLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 139 (177)
T ss_dssp CC-CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred cc-ccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeecc
Confidence 98 66666557889999999999999866556678899999999999988643
No 125
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.60 E-value=2.5e-15 Score=103.17 Aligned_cols=131 Identities=18% Similarity=0.164 Sum_probs=64.0
Q ss_pred CCCCCCcEEEeecCcceeecCccccCCC-CccEEEecCcccccCCCccccCCCCccEEEcccccCCcccCcccccCCCCc
Q 037027 44 GNLSSLQSLNLSFNRLSGSIPSATFITH-TLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFL 122 (205)
Q Consensus 44 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L 122 (205)
..+.+|+.|++++|.+.. .+. +..+. +|++|++++|.++.. ..+..+++|++|++++|.+. .++...+..+++|
T Consensus 16 ~~~~~L~~L~l~~n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L 90 (176)
T 1a9n_A 16 TNAVRDRELDLRGYKIPV-IEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRIC-RIGEGLDQALPDL 90 (176)
T ss_dssp ECTTSCEEEECTTSCCCS-CCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCC-EECSCHHHHCTTC
T ss_pred CCcCCceEEEeeCCCCch-hHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCccc-ccCcchhhcCCCC
Confidence 345556666666665552 222 22222 556666655555432 34445555555555555554 3443333445555
Q ss_pred ceeeecccccccCCCC--CcCCCCcceEEEeecceeecccCc----cccccCCceEEEeeccccc
Q 037027 123 EYISLSQNMFHGGIPS--ALSKCTYLQILGLSFNDFSGAIPK----EIGNVTKLKELYLVRNRLQ 181 (205)
Q Consensus 123 ~~l~l~~~~~~~~~~~--~~~~~~~L~~l~l~~~~~~~~~~~----~~~~~~~L~~l~l~~~~l~ 181 (205)
+.|++++|.+.. .+. .+..+++|+.|++++|.+.. .+. .+..+++|+++++++|.+.
T Consensus 91 ~~L~L~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 91 TELILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp CEEECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CEEECCCCcCCc-chhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccceeCCCcCCHH
Confidence 555555555542 222 34445555555555555442 222 2444555555555555443
No 126
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.58 E-value=8.4e-19 Score=140.67 Aligned_cols=102 Identities=28% Similarity=0.409 Sum_probs=53.2
Q ss_pred ccEEEcccccCCcccCcccccCCCCcceeeecccccccCCCCCcCCCCcceEEEeecceeecccCccccccCCceEEEee
Q 037027 97 LQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLV 176 (205)
Q Consensus 97 L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~ 176 (205)
|+.|++++|.++ .++. +..+++|+.|++++|.++ .+|..+..+++|+.|++++|.+.+ +| .+..+++|++|+++
T Consensus 443 L~~L~Ls~n~l~-~lp~--~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls 516 (567)
T 1dce_A 443 VRVLHLAHKDLT-VLCH--LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLC 516 (567)
T ss_dssp CSEEECTTSCCS-SCCC--GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECC
T ss_pred ceEEEecCCCCC-CCcC--ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECC
Confidence 445555555554 3333 244555555555555554 344455555555555555555543 33 44555555555555
Q ss_pred cccccccC-chhccCCCCCcEEeccCCcC
Q 037027 177 RNRLQGEI-PRELSNLAELELMSLFDNEL 204 (205)
Q Consensus 177 ~~~l~~~~-~~~l~~~~~L~~l~l~~n~l 204 (205)
+|.+++.. |..+..+++|+.|++++|++
T Consensus 517 ~N~l~~~~~p~~l~~l~~L~~L~L~~N~l 545 (567)
T 1dce_A 517 NNRLQQSAAIQPLVSCPRLVLLNLQGNSL 545 (567)
T ss_dssp SSCCCSSSTTGGGGGCTTCCEEECTTSGG
T ss_pred CCCCCCCCCcHHHhcCCCCCEEEecCCcC
Confidence 55555433 55555555555555555544
No 127
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.55 E-value=9.2e-15 Score=120.55 Aligned_cols=152 Identities=25% Similarity=0.375 Sum_probs=99.6
Q ss_pred CCCcEEEeecCcceeecCccccCCCCccEE-----EecCcccccCCCccccCCCCccEEEcccccCCcccCcccccCCCC
Q 037027 47 SSLQSLNLSFNRLSGSIPSATFITHTLKYV-----DLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPF 121 (205)
Q Consensus 47 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L-----~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 121 (205)
+.++.+++.++.+.. .+..+.....|..+ ++..+.+. ..+..+..+..|+.|++++|.+. .++..++ .+++
T Consensus 173 ~~~~~l~L~~n~~~~-~~~~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~-~l~~ 248 (727)
T 4b8c_D 173 PLTPKIELFANGKDE-ANQALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIF-KYDF 248 (727)
T ss_dssp ---------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGG-GCCS
T ss_pred CccceEEeeCCCCCc-chhhHhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhc-CCCC
Confidence 457778887777663 22222222223222 23333333 45667778899999999999998 7887774 7899
Q ss_pred cceeeecccccccCCCCCcCCCCcceEEEeecceeecccCccccccCCceEEEeecccccccCchhccCCCCCcEEeccC
Q 037027 122 LEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFD 201 (205)
Q Consensus 122 L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~L~~l~l~~ 201 (205)
|+.|++++|.++ .+|..+..+++|+.|+|++|.+. .+|..+..+++|++|+|++|.++ .+|..|..+++|+.|++++
T Consensus 249 L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~ 325 (727)
T 4b8c_D 249 LTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEG 325 (727)
T ss_dssp CSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTT
T ss_pred CCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCC
Confidence 999999999998 77888999999999999999998 67888999999999999999998 7788899999999999999
Q ss_pred CcCC
Q 037027 202 NELQ 205 (205)
Q Consensus 202 n~l~ 205 (205)
|+|+
T Consensus 326 N~l~ 329 (727)
T 4b8c_D 326 NPLE 329 (727)
T ss_dssp SCCC
T ss_pred CccC
Confidence 9874
No 128
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.55 E-value=3.6e-14 Score=96.80 Aligned_cols=105 Identities=23% Similarity=0.277 Sum_probs=63.5
Q ss_pred ccEEEecCcccccCCCccccCCCCccEEEcccccCCcccCcccccCCCCcceeeecccccccCCCCCcCCCCcceEEEee
Q 037027 73 LKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLS 152 (205)
Q Consensus 73 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~ 152 (205)
.+.++++++.++ .+|..+ ...+++|++++|.+. .++...+..+++|++|++++|.++...+..+..+++|+.|+++
T Consensus 11 ~~~l~~s~n~l~-~ip~~~--~~~l~~L~L~~N~i~-~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 11 GTTVDCSGKSLA-SVPTGI--PTTTQVLYLYDNQIT-KLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp TTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEEeCCCCcC-ccCccC--CCCCcEEEcCCCcCC-ccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 456666666665 344433 256666667766665 4433333566666666666666665444455666666666666
Q ss_pred cceeecccCccccccCCceEEEeeccccc
Q 037027 153 FNDFSGAIPKEIGNVTKLKELYLVRNRLQ 181 (205)
Q Consensus 153 ~~~~~~~~~~~~~~~~~L~~l~l~~~~l~ 181 (205)
+|.+.+..+..+..+++|++|++++|++.
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 66666554555666666666666666665
No 129
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.54 E-value=4.8e-15 Score=101.75 Aligned_cols=131 Identities=14% Similarity=0.131 Sum_probs=74.7
Q ss_pred ccCCCCccEEEecCcccccCCCccccCCCCccEEEcccccCCcccCcccccCCCCcceeeecccccccCCCCCcCCCCcc
Q 037027 67 TFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYL 146 (205)
Q Consensus 67 ~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L 146 (205)
+..+.+|+.|++.+|.++. .+......++|++|++++|.+. .+ . .+..+++|+++++++|.++...+..+..+++|
T Consensus 15 ~~~~~~L~~L~l~~n~l~~-i~~~~~~~~~L~~L~Ls~N~l~-~~-~-~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIR-KL-D-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 90 (176)
T ss_dssp EECTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCC-EE-C-CCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred cCCcCCceEEEeeCCCCch-hHHhhhcCCCCCEEECCCCCCC-cc-c-ccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence 4455666666666666652 3332222236666666666665 33 2 22556666666666666664333333566666
Q ss_pred eEEEeecceeecccCc--cccccCCceEEEeecccccccCch----hccCCCCCcEEeccCCc
Q 037027 147 QILGLSFNDFSGAIPK--EIGNVTKLKELYLVRNRLQGEIPR----ELSNLAELELMSLFDNE 203 (205)
Q Consensus 147 ~~l~l~~~~~~~~~~~--~~~~~~~L~~l~l~~~~l~~~~~~----~l~~~~~L~~l~l~~n~ 203 (205)
+.|++++|.+.. .+. .+..+++|+++++++|.+. ..+. .+..+++|+.|++++|.
T Consensus 91 ~~L~L~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 91 TELILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp CEEECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECC
T ss_pred CEEECCCCcCCc-chhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCC
Confidence 666666666642 332 4556666666666666666 3333 35666666666666654
No 130
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.52 E-value=8.5e-14 Score=95.32 Aligned_cols=104 Identities=21% Similarity=0.264 Sum_probs=62.5
Q ss_pred cEEEecCcccccCCCccccCCCCccEEEcccccCCcccCcccccCCCCcceeeecccccccCCCCCcCCCCcceEEEeec
Q 037027 74 KYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSF 153 (205)
Q Consensus 74 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~ 153 (205)
+.++++++.+. .+|..+. ..|++|++++|.+. .++...+..+++|+.|++++|.++...+..+..+++|+.|++++
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQIT-KLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCcc-ccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 45666666665 4444332 56666677776665 34333335666666667766666644444456666666666666
Q ss_pred ceeecccCccccccCCceEEEeeccccc
Q 037027 154 NDFSGAIPKEIGNVTKLKELYLVRNRLQ 181 (205)
Q Consensus 154 ~~~~~~~~~~~~~~~~L~~l~l~~~~l~ 181 (205)
|.+.+..+..+..+++|++|++++|++.
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred CccceeCHHHhccccCCCEEEeCCCCcc
Confidence 6666444444566666666666666665
No 131
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.51 E-value=1.6e-13 Score=103.19 Aligned_cols=181 Identities=14% Similarity=0.113 Sum_probs=134.6
Q ss_pred CceEEEEEecCCccc--------------------ccCCCCCCC--------CCCCcEEEeecCcceeecCccccCCCCc
Q 037027 22 SHRVTVFNVSGLNLT--------------------GTIPSQLGN--------LSSLQSLNLSFNRLSGSIPSATFITHTL 73 (205)
Q Consensus 22 ~~~l~~l~l~~~~~~--------------------~~~~~~~~~--------~~~L~~L~l~~~~~~~~~~~~~~~l~~L 73 (205)
.++++.|+++++.+. ......|.+ +++|+.+.+.. .+......+|.++++|
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L 126 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNL 126 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTC
T ss_pred hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCccc
Confidence 456888888888776 223345666 88888888888 7776777788888889
Q ss_pred cEEEecCcccccCCCccccCCCCccEEEcccccCC---cccC-----------------------cc-------------
Q 037027 74 KYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALS---GEIP-----------------------AN------------- 114 (205)
Q Consensus 74 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~---~~~~-----------------------~~------------- 114 (205)
+.+.+..+.+....+..|..+.++..+........ ..+. ..
T Consensus 127 ~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~ 206 (329)
T 3sb4_A 127 KICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINF 206 (329)
T ss_dssp CEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSE
T ss_pred ceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCccccce
Confidence 99999888776566666666666665554441100 0000 00
Q ss_pred --------------cccCCCCcceeeecccccccCCCCCcCCCCcceEEEeecceeecccCccccccCCce-EEEeeccc
Q 037027 115 --------------ICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLK-ELYLVRNR 179 (205)
Q Consensus 115 --------------~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~-~l~l~~~~ 179 (205)
+...+++|+.+++.+|.++.....+|..+++|+.+++.+| +.......|..+++|+ .+++.. .
T Consensus 207 l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~ 284 (329)
T 3sb4_A 207 LTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-S 284 (329)
T ss_dssp EEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-T
T ss_pred EEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-c
Confidence 0012678999999999898776788999999999999998 6657788899999999 999998 7
Q ss_pred ccccCchhccCCCCCcEEeccCCcCC
Q 037027 180 LQGEIPRELSNLAELELMSLFDNELQ 205 (205)
Q Consensus 180 l~~~~~~~l~~~~~L~~l~l~~n~l~ 205 (205)
++...+.+|.+|++|+.+++.+|.++
T Consensus 285 l~~I~~~aF~~c~~L~~l~l~~n~i~ 310 (329)
T 3sb4_A 285 VTAIEFGAFMGCDNLRYVLATGDKIT 310 (329)
T ss_dssp CCEECTTTTTTCTTEEEEEECSSCCC
T ss_pred ceEEchhhhhCCccCCEEEeCCCccC
Confidence 77677899999999999999888763
No 132
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.50 E-value=9.9e-17 Score=112.26 Aligned_cols=127 Identities=20% Similarity=0.218 Sum_probs=58.5
Q ss_pred cccCCCCccEEEecCcccccCCCccccCCCCccEEEcccccCCcccCcccccCCCCcceeeecccccccCCCCCcCCCCc
Q 037027 66 ATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTY 145 (205)
Q Consensus 66 ~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~ 145 (205)
.+..+++|++|++.+|.+.. .+ .+..+++|++|++++|.+. .++... ..+++|+.|++++|.+++ ++ .+..+++
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~-~~~~~L~~L~L~~N~l~~-l~-~~~~l~~ 116 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLD-AVADTLEELWISYNQIAS-LS-GIEKLVN 116 (198)
T ss_dssp HHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHH-HHHHHCSEEEEEEEECCC-HH-HHHHHHH
T ss_pred HHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchh-hcCCcCCEEECcCCcCCc-CC-ccccCCC
Confidence 34444445555554444442 22 3444445555555555444 333322 333445555555555542 12 3444455
Q ss_pred ceEEEeecceeecccC-ccccccCCceEEEeecccccccCch----------hccCCCCCcEEe
Q 037027 146 LQILGLSFNDFSGAIP-KEIGNVTKLKELYLVRNRLQGEIPR----------ELSNLAELELMS 198 (205)
Q Consensus 146 L~~l~l~~~~~~~~~~-~~~~~~~~L~~l~l~~~~l~~~~~~----------~l~~~~~L~~l~ 198 (205)
|+.|++++|.+.+..+ ..+..+++|+++++++|.+.+.+|. .+..+++|+.||
T Consensus 117 L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 117 LRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp SSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred CCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 5555555555442211 2344455555555555555433222 245555555554
No 133
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.45 E-value=3.9e-13 Score=107.94 Aligned_cols=122 Identities=22% Similarity=0.228 Sum_probs=105.5
Q ss_pred CccEEEecCcccccCCCccccCCCCccEEEcccccCCcccCcccccCCCCcceeeecccccccCCCCCcCCCCcceEEEe
Q 037027 72 TLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGL 151 (205)
Q Consensus 72 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l 151 (205)
.|+.|++++|.++. +|. +..+.+|++|++++|.+. .++..+ ..+++|+.|++++|.+++ +| .+..+++|+.|++
T Consensus 442 ~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~-~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~L 515 (567)
T 1dce_A 442 DVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPAL-AALRCLEVLQASDNALEN-VD-GVANLPRLQELLL 515 (567)
T ss_dssp TCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGG-GGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEEC
T ss_pred CceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhh-hcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEEC
Confidence 58899999999984 565 888999999999999998 888766 789999999999999985 55 8899999999999
Q ss_pred ecceeeccc-CccccccCCceEEEeecccccccCc---hhccCCCCCcEEec
Q 037027 152 SFNDFSGAI-PKEIGNVTKLKELYLVRNRLQGEIP---RELSNLAELELMSL 199 (205)
Q Consensus 152 ~~~~~~~~~-~~~~~~~~~L~~l~l~~~~l~~~~~---~~l~~~~~L~~l~l 199 (205)
++|.+.+.. |..+..+++|++|++++|.+++..+ ..+..+++|+.|++
T Consensus 516 s~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 516 CNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp CSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 999998776 8899999999999999999986543 33446899998864
No 134
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.44 E-value=1.8e-16 Score=110.92 Aligned_cols=150 Identities=22% Similarity=0.257 Sum_probs=118.4
Q ss_pred eEEEEEecCCcccccCCC------CCCCCCCCcEEEeecCcceeecCccccCCCCccEEEecCcccccCCCccccCCCCc
Q 037027 24 RVTVFNVSGLNLTGTIPS------QLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSL 97 (205)
Q Consensus 24 ~l~~l~l~~~~~~~~~~~------~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L 97 (205)
.++.++++++.+.+..|. .+..+++|+.|++++|.+.. .+ .+..+++|++|++.+|.+. .++..+..+++|
T Consensus 19 ~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L 95 (198)
T 1ds9_A 19 SVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTL 95 (198)
T ss_dssp CCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHC
T ss_pred cccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcC
Confidence 445555666666555554 77889999999999999985 45 7888999999999999998 567666667899
Q ss_pred cEEEcccccCCcccCcccccCCCCcceeeecccccccCCC-CCcCCCCcceEEEeecceeecccCc----------cccc
Q 037027 98 QDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIP-SALSKCTYLQILGLSFNDFSGAIPK----------EIGN 166 (205)
Q Consensus 98 ~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~-~~~~~~~~L~~l~l~~~~~~~~~~~----------~~~~ 166 (205)
++|++++|.+. .++ .+ ..+++|+.+++++|.+++..+ ..+..+++|+.|++++|.+.+..|. .+..
T Consensus 96 ~~L~L~~N~l~-~l~-~~-~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~ 172 (198)
T 1ds9_A 96 EELWISYNQIA-SLS-GI-EKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKR 172 (198)
T ss_dssp SEEEEEEEECC-CHH-HH-HHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHH
T ss_pred CEEECcCCcCC-cCC-cc-ccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHh
Confidence 99999999997 454 33 678899999999999975322 4678899999999999998655443 3677
Q ss_pred cCCceEEEeeccccc
Q 037027 167 VTKLKELYLVRNRLQ 181 (205)
Q Consensus 167 ~~~L~~l~l~~~~l~ 181 (205)
+++|+.++ ++.++
T Consensus 173 l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 173 LPNLKKLD--GMPVD 185 (198)
T ss_dssp CSSCSEEC--CGGGT
T ss_pred CCCcEEEC--CcccC
Confidence 89999886 66665
No 135
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.40 E-value=2.2e-12 Score=87.89 Aligned_cols=107 Identities=24% Similarity=0.276 Sum_probs=90.6
Q ss_pred CCcEEEeecCcceeecCccccCCCCccEEEecCcccccCCCccccCCCCccEEEcccccCCcccCcccccCCCCcceeee
Q 037027 48 SLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISL 127 (205)
Q Consensus 48 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l 127 (205)
..+.++++++.+.. ++..+ .+++++|++++|.++...+..+..+.+|++|++++|.+. .++...+..+++|+.|++
T Consensus 10 ~~~~l~~s~n~l~~-ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L 85 (170)
T 3g39_A 10 SGTTVDCSGKSLAS-VPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKLTQLTQLSL 85 (170)
T ss_dssp ETTEEECTTSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEEC
T ss_pred CCCEEEeCCCCcCc-cCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcC-ccChhhccCCCCCCEEEC
Confidence 35788999998873 45443 378999999999999777888889999999999999998 677776688999999999
Q ss_pred cccccccCCCCCcCCCCcceEEEeecceeec
Q 037027 128 SQNMFHGGIPSALSKCTYLQILGLSFNDFSG 158 (205)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~ 158 (205)
++|.++...+..+..+++|+.|++++|++..
T Consensus 86 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 116 (170)
T 3g39_A 86 NDNQLKSIPRGAFDNLKSLTHIWLLNNPWDC 116 (170)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred CCCccCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence 9999987666678899999999999998763
No 136
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.39 E-value=4.3e-15 Score=113.47 Aligned_cols=157 Identities=24% Similarity=0.227 Sum_probs=70.5
Q ss_pred CCcEEEeecCcceeecCccc----c-CCCCccEEEecCcccccCCCcccc-CCCCccEEEcccccCCcccCcccc----c
Q 037027 48 SLQSLNLSFNRLSGSIPSAT----F-ITHTLKYVDLRGNQLSGAFPSFIF-NKSSLQDLDLSYNALSGEIPANIC----S 117 (205)
Q Consensus 48 ~L~~L~l~~~~~~~~~~~~~----~-~l~~L~~L~l~~~~~~~~~~~~l~-~l~~L~~L~l~~~~~~~~~~~~~~----~ 117 (205)
.++.|++++|.+.......+ . ...+|++|++++|.++......+. .+.+|++|++++|.+.+.....+. .
T Consensus 73 ~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~ 152 (372)
T 3un9_A 73 SLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLH 152 (372)
T ss_dssp TCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHS
T ss_pred hCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHh
Confidence 45555555555542211111 1 124555556555554321111111 233555556665555422111111 1
Q ss_pred CCCCcceeeecccccccC----CCCCcCCCCcceEEEeecceeeccc----CccccccCCceEEEeeccccccc----Cc
Q 037027 118 NLPFLEYISLSQNMFHGG----IPSALSKCTYLQILGLSFNDFSGAI----PKEIGNVTKLKELYLVRNRLQGE----IP 185 (205)
Q Consensus 118 ~~~~L~~l~l~~~~~~~~----~~~~~~~~~~L~~l~l~~~~~~~~~----~~~~~~~~~L~~l~l~~~~l~~~----~~ 185 (205)
..+.|++|++++|.+++. ++..+..+++|++|++++|.+.+.. ...+...+.|++|++++|.+++. ++
T Consensus 153 ~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~ 232 (372)
T 3un9_A 153 DQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALA 232 (372)
T ss_dssp TTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHH
T ss_pred cCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHH
Confidence 234555666665555431 2222344555666666665554321 22333445566666666655532 22
Q ss_pred hhccCCCCCcEEeccCCcC
Q 037027 186 RELSNLAELELMSLFDNEL 204 (205)
Q Consensus 186 ~~l~~~~~L~~l~l~~n~l 204 (205)
..+...++|++|++++|+|
T Consensus 233 ~~L~~~~~L~~L~Ls~N~i 251 (372)
T 3un9_A 233 RAAREHPSLELLHLYFNEL 251 (372)
T ss_dssp HHHHHCSSCCEEECTTSSC
T ss_pred HHHHhCCCCCEEeccCCCC
Confidence 3333445566666666554
No 137
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.38 E-value=9.5e-12 Score=95.92 Aligned_cols=172 Identities=15% Similarity=0.116 Sum_probs=85.6
Q ss_pred eEEEEEecCCcccccCCCCCCCCCCCcEEEeecCcceee----------------------cCccccCCCCccEEEecCc
Q 037027 24 RVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGS----------------------IPSATFITHTLKYVDLRGN 81 (205)
Q Consensus 24 ~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~----------------------~~~~~~~l~~L~~L~l~~~ 81 (205)
.++.+.+.. .+.......|.++.+|+.+++.++.+... ...+|..+++|+.+.+..+
T Consensus 158 ~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~l~~I~~~aF~~~~~L~~l~l~~~ 236 (401)
T 4fdw_A 158 TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVTLKEIGSQAFLKTSQLKTIEIPEN 236 (401)
T ss_dssp CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCTTCCEECTTTTTTCTTCCCEECCTT
T ss_pred CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEEeCCchheehhhHhhCCCCCCEEecCCC
Confidence 355555543 33333444555566666666655544433 3344444444555444432
Q ss_pred ccccCCCccccCCCCccEEEcccccCCcccCcccccCCCCcceeeecccccc-----cCCCCCcCCCCcceEEEeeccee
Q 037027 82 QLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFH-----GGIPSALSKCTYLQILGLSFNDF 156 (205)
Q Consensus 82 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~-----~~~~~~~~~~~~L~~l~l~~~~~ 156 (205)
++......|.. ..|+.+.+.. .+. .+....|.++++|+.+.+..+.+. .....+|..|++|+.+.+..+ +
T Consensus 237 -l~~I~~~aF~~-~~L~~i~lp~-~i~-~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~-i 311 (401)
T 4fdw_A 237 -VSTIGQEAFRE-SGITTVKLPN-GVT-NIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPES-I 311 (401)
T ss_dssp -CCEECTTTTTT-CCCSEEEEET-TCC-EECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTT-C
T ss_pred -ccCcccccccc-CCccEEEeCC-Ccc-EEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCc-e
Confidence 11122222222 3444444422 232 344444455666666666555432 133345666666666666533 3
Q ss_pred ecccCccccccCCceEEEeecccccccCchhccCCCCCcEEeccCCc
Q 037027 157 SGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFDNE 203 (205)
Q Consensus 157 ~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~L~~l~l~~n~ 203 (205)
.......+..+++|+.+.+..+ ++.....+|.++ +|+.+++.+|.
T Consensus 312 ~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~ 356 (401)
T 4fdw_A 312 RILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTT 356 (401)
T ss_dssp CEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSS
T ss_pred EEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCC
Confidence 3344555666666666666433 444445666666 67777666654
No 138
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.37 E-value=4.4e-12 Score=86.76 Aligned_cols=105 Identities=23% Similarity=0.256 Sum_probs=89.9
Q ss_pred CcEEEeecCcceeecCccccCCCCccEEEecCcccccCCCccccCCCCccEEEcccccCCcccCcccccCCCCcceeeec
Q 037027 49 LQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLS 128 (205)
Q Consensus 49 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~ 128 (205)
-+.++++++.+. .++..+ .+.|++|++++|.+....+..+..+.+|++|++++|.+. .++...+..+++|+.|+++
T Consensus 14 ~~~l~~~~n~l~-~iP~~~--~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~ 89 (174)
T 2r9u_A 14 QTLVNCQNIRLA-SVPAGI--PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLT-AIPTGVFDKLTQLTQLDLN 89 (174)
T ss_dssp SSEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECC
T ss_pred CcEEEeCCCCCC-ccCCCc--CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCC-ccChhHhCCcchhhEEECC
Confidence 467899998887 455544 378999999999999777888899999999999999998 6777766889999999999
Q ss_pred ccccccCCCCCcCCCCcceEEEeecceee
Q 037027 129 QNMFHGGIPSALSKCTYLQILGLSFNDFS 157 (205)
Q Consensus 129 ~~~~~~~~~~~~~~~~~L~~l~l~~~~~~ 157 (205)
+|.++...+..+..+++|+.|++++|++.
T Consensus 90 ~N~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 90 DNHLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp SSCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred CCccceeCHHHhccccCCCEEEeCCCCcc
Confidence 99998665566899999999999999886
No 139
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.32 E-value=4.6e-11 Score=92.09 Aligned_cols=172 Identities=15% Similarity=0.109 Sum_probs=109.9
Q ss_pred eEEEEEecCCcccccCCCCCCCCCCCcEEEeecCcceeecCccccCCCCccEEEecCcccccCCCccccCCCCccEEEcc
Q 037027 24 RVTVFNVSGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLS 103 (205)
Q Consensus 24 ~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 103 (205)
+++.+.+..+ +.......|.+ .+|+.+.+.. .+......+|..+.+|+.+.+..+.++......|. ...|+.+.+.
T Consensus 136 ~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp 211 (401)
T 4fdw_A 136 QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLP 211 (401)
T ss_dssp CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECC
T ss_pred CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeC
Confidence 6778888654 65556667777 4799999986 66667788999999999999998877644444443 4667777776
Q ss_pred cccCCcccCcccccCCCCcceeeeccc---------------------ccccCCCCCcCCCCcceEEEeecceee-----
Q 037027 104 YNALSGEIPANICSNLPFLEYISLSQN---------------------MFHGGIPSALSKCTYLQILGLSFNDFS----- 157 (205)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~L~~l~l~~~---------------------~~~~~~~~~~~~~~~L~~l~l~~~~~~----- 157 (205)
.+ +. .+....|.++++|+.+.+..+ .++.....+|..|++|+.+.+.++...
T Consensus 212 ~~-l~-~I~~~aF~~~~~L~~l~l~~~l~~I~~~aF~~~~L~~i~lp~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~ 289 (401)
T 4fdw_A 212 VT-LK-EIGSQAFLKTSQLKTIEIPENVSTIGQEAFRESGITTVKLPNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEA 289 (401)
T ss_dssp TT-CC-EECTTTTTTCTTCCCEECCTTCCEECTTTTTTCCCSEEEEETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTC
T ss_pred Cc-hh-eehhhHhhCCCCCCEEecCCCccCccccccccCCccEEEeCCCccEEChhHhhCCCCCCEEEeCCccccCCccc
Confidence 43 43 455555555666666655442 222233455666666666666665442
Q ss_pred cccCccccccCCceEEEeecccccccCchhccCCCCCcEEeccCC
Q 037027 158 GAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFDN 202 (205)
Q Consensus 158 ~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~L~~l~l~~n 202 (205)
......+..+++|+.+.+. +.++.....+|.+|.+|+.+.+..+
T Consensus 290 ~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~ 333 (401)
T 4fdw_A 290 MIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN 333 (401)
T ss_dssp EECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT
T ss_pred EECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc
Confidence 2444556666666666666 3355455566777777777776443
No 140
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.30 E-value=6.5e-15 Score=112.47 Aligned_cols=181 Identities=18% Similarity=0.174 Sum_probs=123.6
Q ss_pred ceEEEEEecCCcccccCCCCC----C-CCCCCcEEEeecCcceeecCccc-cCCCCccEEEecCcccccCCCccc-----
Q 037027 23 HRVTVFNVSGLNLTGTIPSQL----G-NLSSLQSLNLSFNRLSGSIPSAT-FITHTLKYVDLRGNQLSGAFPSFI----- 91 (205)
Q Consensus 23 ~~l~~l~l~~~~~~~~~~~~~----~-~~~~L~~L~l~~~~~~~~~~~~~-~~l~~L~~L~l~~~~~~~~~~~~l----- 91 (205)
+.++.|++++|.++......+ . ..++|+.|++++|.+.+.....+ ..+.+|+.|++++|.++......+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 468899999998864322222 2 23689999999999874433322 345689999999998874333333
Q ss_pred cCCCCccEEEcccccCCcccCccc---ccCCCCcceeeecccccccC----CCCCcCCCCcceEEEeecceeecccC---
Q 037027 92 FNKSSLQDLDLSYNALSGEIPANI---CSNLPFLEYISLSQNMFHGG----IPSALSKCTYLQILGLSFNDFSGAIP--- 161 (205)
Q Consensus 92 ~~l~~L~~L~l~~~~~~~~~~~~~---~~~~~~L~~l~l~~~~~~~~----~~~~~~~~~~L~~l~l~~~~~~~~~~--- 161 (205)
...+.|++|++++|.+.+.....+ ....+.|++|++++|.+.+. +...+...++|+.|++++|.+.+...
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l 231 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALAL 231 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHH
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHH
Confidence 246789999999998863222211 14578899999999998752 24556777899999999999865332
Q ss_pred -ccccccCCceEEEeecccccccCchhccCCC-----CCcEEe--ccCCc
Q 037027 162 -KEIGNVTKLKELYLVRNRLQGEIPRELSNLA-----ELELMS--LFDNE 203 (205)
Q Consensus 162 -~~~~~~~~L~~l~l~~~~l~~~~~~~l~~~~-----~L~~l~--l~~n~ 203 (205)
..+...++|++|++++|.+++.....+.... .++.+. +..+.
T Consensus 232 ~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~ 281 (372)
T 3un9_A 232 ARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTA 281 (372)
T ss_dssp HHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----
T ss_pred HHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCc
Confidence 3344568999999999999876555554332 166665 55544
No 141
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.28 E-value=3.3e-13 Score=108.92 Aligned_cols=83 Identities=10% Similarity=0.134 Sum_probs=36.4
Q ss_pred EEEEEecCCc-ccc-cCCCCCCCCCCCcEEEeecCcceee----cCccccCCCCccEEEecCccccc----CCCccccCC
Q 037027 25 VTVFNVSGLN-LTG-TIPSQLGNLSSLQSLNLSFNRLSGS----IPSATFITHTLKYVDLRGNQLSG----AFPSFIFNK 94 (205)
Q Consensus 25 l~~l~l~~~~-~~~-~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~----~~~~~l~~l 94 (205)
++.|++.+|. +.. ..+..+.++++|+.|++.+|.+.+. ....+..+++|++|++..+.++. ..+..+..+
T Consensus 140 L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~ 219 (592)
T 3ogk_B 140 LETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNC 219 (592)
T ss_dssp CCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHC
T ss_pred CcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhC
Confidence 6666666654 110 0111112455666666666655422 11122344555555555554431 111222334
Q ss_pred CCccEEEcccccC
Q 037027 95 SSLQDLDLSYNAL 107 (205)
Q Consensus 95 ~~L~~L~l~~~~~ 107 (205)
++|++|++.++.+
T Consensus 220 ~~L~~L~L~~~~~ 232 (592)
T 3ogk_B 220 RSLVSVKVGDFEI 232 (592)
T ss_dssp TTCCEEECSSCBG
T ss_pred CCCcEEeccCccH
Confidence 4555555555443
No 142
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.27 E-value=1.5e-11 Score=93.06 Aligned_cols=103 Identities=20% Similarity=0.224 Sum_probs=75.7
Q ss_pred EEEecCc-ccccCCCccccCCCCccEEEccc-ccCCcccCcccccCCCCcceeeecccccccCCCCCcCCCCcceEEEee
Q 037027 75 YVDLRGN-QLSGAFPSFIFNKSSLQDLDLSY-NALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLS 152 (205)
Q Consensus 75 ~L~l~~~-~~~~~~~~~l~~l~~L~~L~l~~-~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~ 152 (205)
.++..++ .++ .+|. +..+.+|++|++++ |.+. .++...+..+++|+.|++++|.+++..+..|..+++|+.|+|+
T Consensus 12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQ-HLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCC-EECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCC-CcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 4566666 666 4666 77778888888885 8886 5665555778888888888888877667777888888888888
Q ss_pred cceeecccCccccccCCceEEEeeccccc
Q 037027 153 FNDFSGAIPKEIGNVTKLKELYLVRNRLQ 181 (205)
Q Consensus 153 ~~~~~~~~~~~~~~~~~L~~l~l~~~~l~ 181 (205)
+|.+.+..+..+..++ |++|++.+|.+.
T Consensus 89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 89 FNALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp SSCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred CCccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 8888755555554444 888888888776
No 143
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.26 E-value=3.2e-13 Score=108.99 Aligned_cols=108 Identities=18% Similarity=0.216 Sum_probs=56.1
Q ss_pred ceEEEEEecCCcccccCCCCCC-CCCCCcEEEeecC-cceee-cCccccCCCCccEEEecCcccccCCCccc----cCCC
Q 037027 23 HRVTVFNVSGLNLTGTIPSQLG-NLSSLQSLNLSFN-RLSGS-IPSATFITHTLKYVDLRGNQLSGAFPSFI----FNKS 95 (205)
Q Consensus 23 ~~l~~l~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~-~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~l----~~l~ 95 (205)
++++.|+++++.++...+..+. .+++|+.|++.+| .+.+. .+..+..+++|++|++.+|.++...+..+ ..++
T Consensus 105 ~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~ 184 (594)
T 2p1m_B 105 TWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYT 184 (594)
T ss_dssp TTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCC
T ss_pred CCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCC
Confidence 3566667766665543333333 4566777777766 33321 22223356677777777776554332222 2455
Q ss_pred CccEEEccccc--CCcccCcccccCCCCcceeeeccc
Q 037027 96 SLQDLDLSYNA--LSGEIPANICSNLPFLEYISLSQN 130 (205)
Q Consensus 96 ~L~~L~l~~~~--~~~~~~~~~~~~~~~L~~l~l~~~ 130 (205)
+|++|++.++. +.......+...+++|+.|++.+|
T Consensus 185 ~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~ 221 (594)
T 2p1m_B 185 SLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRA 221 (594)
T ss_dssp CCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred cCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCC
Confidence 67777777664 211111111123466666666655
No 144
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.24 E-value=9.6e-13 Score=106.18 Aligned_cols=81 Identities=11% Similarity=0.183 Sum_probs=43.8
Q ss_pred CCceEEEEEecCCccccc----CCCCCCCCCCCcEEEeecCcce----eecCccccCCCCccEEEecCcccccCCCcccc
Q 037027 21 HSHRVTVFNVSGLNLTGT----IPSQLGNLSSLQSLNLSFNRLS----GSIPSATFITHTLKYVDLRGNQLSGAFPSFIF 92 (205)
Q Consensus 21 ~~~~l~~l~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~----~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~ 92 (205)
..++++.|++++|.+.+. ++..+..+++|+.|+++++.+. ...+..+..+++|++|++.+|.+.. .+..+.
T Consensus 162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~ 240 (592)
T 3ogk_B 162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFK 240 (592)
T ss_dssp HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHH
T ss_pred hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHh
Confidence 345777888888776533 1222345667777777776664 1223334456677777777665542 223333
Q ss_pred CCCCccEEEc
Q 037027 93 NKSSLQDLDL 102 (205)
Q Consensus 93 ~l~~L~~L~l 102 (205)
.+++|+++++
T Consensus 241 ~~~~L~~L~l 250 (592)
T 3ogk_B 241 AAANLEEFCG 250 (592)
T ss_dssp HCTTCCEEEE
T ss_pred hhhHHHhhcc
Confidence 3344444443
No 145
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.22 E-value=6.8e-14 Score=112.91 Aligned_cols=181 Identities=13% Similarity=0.088 Sum_probs=98.2
Q ss_pred CceEEEEEecCCcccccC-CCCCCCCCCCcEEEeecCcceeecCc-cccCCCCccEEEecCc---------ccccCCCcc
Q 037027 22 SHRVTVFNVSGLNLTGTI-PSQLGNLSSLQSLNLSFNRLSGSIPS-ATFITHTLKYVDLRGN---------QLSGAFPSF 90 (205)
Q Consensus 22 ~~~l~~l~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~---------~~~~~~~~~ 90 (205)
.++++.|++++|.+.... ...+..+++|+.|++.++ +.+.... ....+++|++|++..+ .++......
T Consensus 288 ~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~ 366 (594)
T 2p1m_B 288 CSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVS 366 (594)
T ss_dssp HTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHH
T ss_pred hCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHH
Confidence 457889999998865332 223457788888888877 3322111 1223566777766331 111100001
Q ss_pred c-cCCCCccEEEcccccCCcccCccc-----------------------------------ccCCCCcceeeeccccccc
Q 037027 91 I-FNKSSLQDLDLSYNALSGEIPANI-----------------------------------CSNLPFLEYISLSQNMFHG 134 (205)
Q Consensus 91 l-~~l~~L~~L~l~~~~~~~~~~~~~-----------------------------------~~~~~~L~~l~l~~~~~~~ 134 (205)
+ ..+++|++|.+..+.+++.....+ +..+++|+.|++++ .+++
T Consensus 367 l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~ 445 (594)
T 2p1m_B 367 VSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTD 445 (594)
T ss_dssp HHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCH
T ss_pred HHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccH
Confidence 1 113444444444333332111111 23344555555544 3332
Q ss_pred CCCCCcCC-CCcceEEEeecceeecccCccc-cccCCceEEEeecccccccCch-hccCCCCCcEEeccCCcC
Q 037027 135 GIPSALSK-CTYLQILGLSFNDFSGAIPKEI-GNVTKLKELYLVRNRLQGEIPR-ELSNLAELELMSLFDNEL 204 (205)
Q Consensus 135 ~~~~~~~~-~~~L~~l~l~~~~~~~~~~~~~-~~~~~L~~l~l~~~~l~~~~~~-~l~~~~~L~~l~l~~n~l 204 (205)
.....+.. +++|+.|++++|.+.+.....+ ..+++|++|++++|.+++.... ....+++|+.|++++|++
T Consensus 446 ~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 446 KVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp HHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred HHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 22222222 6678888888887754444333 5578888888888888654433 344578888888888875
No 146
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.16 E-value=1.8e-10 Score=87.07 Aligned_cols=101 Identities=21% Similarity=0.202 Sum_probs=66.5
Q ss_pred EecCC-cccccCCCCCCCCCCCcEEEeec-CcceeecCccccCCCCccEEEecCcccccCCCccccCCCCccEEEccccc
Q 037027 29 NVSGL-NLTGTIPSQLGNLSSLQSLNLSF-NRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNA 106 (205)
Q Consensus 29 ~l~~~-~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 106 (205)
+.+++ .+. .+|. +..+.+|+.|++++ |.+....+..|..+++|+.|++++|.++...+..|..+.+|++|++++|.
T Consensus 14 ~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 91 (347)
T 2ifg_A 14 RCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA 91 (347)
T ss_dssp ECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC
T ss_pred EcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCc
Confidence 34444 444 3555 67777777777774 77765555667777777777777777776666666777777777777777
Q ss_pred CCcccCcccccCCCCcceeeecccccc
Q 037027 107 LSGEIPANICSNLPFLEYISLSQNMFH 133 (205)
Q Consensus 107 ~~~~~~~~~~~~~~~L~~l~l~~~~~~ 133 (205)
+. .++...+..++ |+.|++.+|.+.
T Consensus 92 l~-~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 92 LE-SLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp CS-CCCSTTTCSCC-CCEEECCSSCCC
T ss_pred cc-eeCHHHcccCC-ceEEEeeCCCcc
Confidence 76 55555544444 777777777654
No 147
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.01 E-value=3.7e-10 Score=85.78 Aligned_cols=160 Identities=14% Similarity=0.181 Sum_probs=98.8
Q ss_pred CCCCCCCcEEEeecCcce---------eecCccccCCCCccEEEecCcccccCCCccccCCCCccEEEcccccCCcccCc
Q 037027 43 LGNLSSLQSLNLSFNRLS---------GSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPA 113 (205)
Q Consensus 43 ~~~~~~L~~L~l~~~~~~---------~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 113 (205)
+..+++|+.|.+...... ......+..+++|+.|.+.++.-. ..+. + .+++|++|.+..+.+......
T Consensus 135 ~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~ 211 (362)
T 2ra8_A 135 KEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVE 211 (362)
T ss_dssp HHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHH
T ss_pred hhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHH
Confidence 345678888888654321 012234456788999999877311 2222 3 377899999888877533323
Q ss_pred ccc-cCCCCcceeeeccc--cccc-----CCCCCc--CCCCcceEEEeecceeecccCccc---cccCCceEEEeecccc
Q 037027 114 NIC-SNLPFLEYISLSQN--MFHG-----GIPSAL--SKCTYLQILGLSFNDFSGAIPKEI---GNVTKLKELYLVRNRL 180 (205)
Q Consensus 114 ~~~-~~~~~L~~l~l~~~--~~~~-----~~~~~~--~~~~~L~~l~l~~~~~~~~~~~~~---~~~~~L~~l~l~~~~l 180 (205)
.+. ..+++|+.|+++.+ ...+ .+...+ ..+++|+.|++.+|.+.+.....+ ..++.|++|+++.|.+
T Consensus 212 ~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L 291 (362)
T 2ra8_A 212 DILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVL 291 (362)
T ss_dssp HHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCC
T ss_pred HHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCC
Confidence 332 25788888887532 1111 111122 246889999998887754332222 2467899999998888
Q ss_pred cccCc----hhccCCCCCcEEeccCCcCC
Q 037027 181 QGEIP----RELSNLAELELMSLFDNELQ 205 (205)
Q Consensus 181 ~~~~~----~~l~~~~~L~~l~l~~n~l~ 205 (205)
.+..+ ..+..+++|+.|++++|.++
T Consensus 292 ~d~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 292 TDEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp BHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred ChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence 86433 33345788999999988764
No 148
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.84 E-value=5.7e-10 Score=84.75 Aligned_cols=176 Identities=14% Similarity=0.158 Sum_probs=110.2
Q ss_pred CceEEEEEecCCccc---------ccCCCCCCCCCCCcEEEeecCcceeecCccccCCCCccEEEecCcccccCCCcccc
Q 037027 22 SHRVTVFNVSGLNLT---------GTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIF 92 (205)
Q Consensus 22 ~~~l~~l~l~~~~~~---------~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~ 92 (205)
.++++.|.+.+.... +.+...+..+++|+.|.+.++... ..+. + ..++|+.|.+..+.+.......+.
T Consensus 138 l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~ 214 (362)
T 2ra8_A 138 FAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDIL 214 (362)
T ss_dssp HTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHH
T ss_pred cchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHH
Confidence 357888888654321 112233456789999999887322 1222 3 378999999998876533223333
Q ss_pred --CCCCccEEEcccc--cCCc-----ccCcccc-cCCCCcceeeecccccccCCCCCc---CCCCcceEEEeecceeecc
Q 037027 93 --NKSSLQDLDLSYN--ALSG-----EIPANIC-SNLPFLEYISLSQNMFHGGIPSAL---SKCTYLQILGLSFNDFSGA 159 (205)
Q Consensus 93 --~l~~L~~L~l~~~--~~~~-----~~~~~~~-~~~~~L~~l~l~~~~~~~~~~~~~---~~~~~L~~l~l~~~~~~~~ 159 (205)
.+++|++|+++.+ ...+ .+...+. ..+++|+.|++.+|.+.+..+..+ ..+++|+.|+++.|.+.+.
T Consensus 215 ~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~ 294 (362)
T 2ra8_A 215 GSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDE 294 (362)
T ss_dssp HSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHH
T ss_pred HccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChH
Confidence 6889999998632 1111 1111121 247899999999998764222222 2468999999999988654
Q ss_pred c----CccccccCCceEEEeecccccccCchhccC-CCCCcEEeccCC
Q 037027 160 I----PKEIGNVTKLKELYLVRNRLQGEIPRELSN-LAELELMSLFDN 202 (205)
Q Consensus 160 ~----~~~~~~~~~L~~l~l~~~~l~~~~~~~l~~-~~~L~~l~l~~n 202 (205)
. +..+..+++|+.|+++.|.+++...+.+.. + -..++++.+
T Consensus 295 G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~ 340 (362)
T 2ra8_A 295 GARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDS 340 (362)
T ss_dssp HHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSB
T ss_pred HHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCC
Confidence 3 233356799999999999998655544443 2 234566554
No 149
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.72 E-value=3.2e-09 Score=71.97 Aligned_cols=87 Identities=15% Similarity=0.152 Sum_probs=55.1
Q ss_pred CCccEEEcccccCCcccCcccccCCCCcceeeecccc-cccCCCCCcCCC----CcceEEEeecce-eecccCccccccC
Q 037027 95 SSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNM-FHGGIPSALSKC----TYLQILGLSFND-FSGAIPKEIGNVT 168 (205)
Q Consensus 95 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~-~~~~~~~~~~~~----~~L~~l~l~~~~-~~~~~~~~~~~~~ 168 (205)
..|++|+++++.+++..-..+ ..+++|+.|++++|. +++..-..+..+ ++|+.|++++|. +++..-..+..++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L-~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~ 139 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHM-EGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFR 139 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGG-TTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred ceEeEEeCcCCCccHHHHHHh-cCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence 467788888877764444444 567777888887774 554333334442 367777777774 5554445566677
Q ss_pred CceEEEeeccc-ccc
Q 037027 169 KLKELYLVRNR-LQG 182 (205)
Q Consensus 169 ~L~~l~l~~~~-l~~ 182 (205)
+|++|++++|. +++
T Consensus 140 ~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 140 NLKYLFLSDLPGVKE 154 (176)
T ss_dssp TCCEEEEESCTTCCC
T ss_pred CCCEEECCCCCCCCc
Confidence 77777777773 553
No 150
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.62 E-value=3.8e-09 Score=72.79 Aligned_cols=117 Identities=12% Similarity=0.099 Sum_probs=54.6
Q ss_pred ccccCCCCccEEEecCc-cccc----CCCccccCCCCccEEEcccccCCcccCccc---ccCCCCcceeeecccccccC-
Q 037027 65 SATFITHTLKYVDLRGN-QLSG----AFPSFIFNKSSLQDLDLSYNALSGEIPANI---CSNLPFLEYISLSQNMFHGG- 135 (205)
Q Consensus 65 ~~~~~l~~L~~L~l~~~-~~~~----~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~---~~~~~~L~~l~l~~~~~~~~- 135 (205)
..+...+.|++|++.+| .+.. .+...+...+.|++|++++|.+.+.....+ ....+.|++|++++|.+.+.
T Consensus 30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g 109 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG 109 (185)
T ss_dssp HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH
T ss_pred HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHH
Confidence 34455666777777766 5542 122333445566666666666643221111 12234455555555555431
Q ss_pred ---CCCCcCCCCcceEEEe--ecceeeccc----CccccccCCceEEEeeccccc
Q 037027 136 ---IPSALSKCTYLQILGL--SFNDFSGAI----PKEIGNVTKLKELYLVRNRLQ 181 (205)
Q Consensus 136 ---~~~~~~~~~~L~~l~l--~~~~~~~~~----~~~~~~~~~L~~l~l~~~~l~ 181 (205)
+...+...++|+.|++ .+|.+.+.. ...+...+.|++|++++|.+.
T Consensus 110 ~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 110 ILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 2233444444555555 444443221 122223344555555555443
No 151
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.59 E-value=2e-06 Score=66.12 Aligned_cols=145 Identities=16% Similarity=0.163 Sum_probs=73.3
Q ss_pred CCCCCCCcEEEeecCcceeecCccccCCCCccEEEecCcccccCCCccccCCCCccEEEcccccCCcccCcccccCCCCc
Q 037027 43 LGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFL 122 (205)
Q Consensus 43 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L 122 (205)
|..+..++.+.+..+... ....+|..+..++.+......+. ...+..+.+|+.+.+..+ +. .+....|.++.+|
T Consensus 249 f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~~~-i~-~I~~~aF~~c~~L 322 (394)
T 4fs7_A 249 FYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEVKLLDS-VK-FIGEEAFESCTSL 322 (394)
T ss_dssp TTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEEC---TTTTTTCTTCCEEEECTT-CC-EECTTTTTTCTTC
T ss_pred ccccccceeEEcCCCcce-eeccccccccccceeccCceeec---cccccccccccccccccc-cc-eechhhhcCCCCC
Confidence 344444444444433222 33344444445554444433221 223344556666665543 33 4444445566666
Q ss_pred ceeeecccccccCCCCCcCCCCcceEEEeecceeecccCccccccCCceEEEeecccccccCchhccCCCCCcEE
Q 037027 123 EYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELELM 197 (205)
Q Consensus 123 ~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~L~~l 197 (205)
+.+.+..+ ++.....+|..|++|+.+.+..+ +......++..|++|+.+++..+ ++ ....+|.++++|+.+
T Consensus 323 ~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~-~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 323 VSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LE-QYRYDFEDTTKFKWI 393 (394)
T ss_dssp CEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GG-GGGGGBCTTCEEEEE
T ss_pred CEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CE-EhhheecCCCCCcEE
Confidence 66666433 43334456666666666666555 33344556666666666666543 22 223456666666654
No 152
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.57 E-value=7.2e-07 Score=68.54 Aligned_cols=132 Identities=16% Similarity=0.146 Sum_probs=91.8
Q ss_pred cCccccCCCCccEEEecCcccccCCCccccCCCCccEEEcccccCCcccCcccccCCCCcceeeecccccccCCCCCcCC
Q 037027 63 IPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSK 142 (205)
Q Consensus 63 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~ 142 (205)
...++..+..++.+.+..+... .....+..+..++.+...... ++...+..+..|+.+.+..+ ++.....+|..
T Consensus 245 ~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~----i~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~ 318 (394)
T 4fs7_A 245 GKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVI----VPEKTFYGCSSLTEVKLLDS-VKFIGEEAFES 318 (394)
T ss_dssp CSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSE----ECTTTTTTCTTCCEEEECTT-CCEECTTTTTT
T ss_pred ccccccccccceeEEcCCCcce-eeccccccccccceeccCcee----eccccccccccccccccccc-cceechhhhcC
Confidence 3445556666666666554332 344445556666666554443 33344567788888888654 55455678999
Q ss_pred CCcceEEEeecceeecccCccccccCCceEEEeecccccccCchhccCCCCCcEEeccCC
Q 037027 143 CTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFDN 202 (205)
Q Consensus 143 ~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~L~~l~l~~n 202 (205)
+++|+.+++..+ +......++..|++|+.+.+..+ ++.....+|.+|++|+.+++..+
T Consensus 319 c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 319 CTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp CTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred CCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence 999999999765 44466788899999999999876 66566789999999999998654
No 153
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.48 E-value=4.3e-06 Score=63.77 Aligned_cols=147 Identities=12% Similarity=0.145 Sum_probs=94.5
Q ss_pred CCCCCCCCCcEEEeecCcceeecCccccCCCCccEEEecCcccccCCCccccCCCCccEEEcccccCCcccCcccccCCC
Q 037027 41 SQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLP 120 (205)
Q Consensus 41 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 120 (205)
..+..+.+++.+.+..+ +......++..+..|+.+.+..+ ++......+..+..|+.+.+..+ +. .+....|.++.
T Consensus 211 ~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~-~i~~~aF~~c~ 286 (379)
T 4h09_A 211 YGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VK-TVPYLLCSGCS 286 (379)
T ss_dssp TTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CS-EECTTTTTTCT
T ss_pred cccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ce-ecccccccccc
Confidence 34445566777666543 33345566777777888877664 33344555666777777777544 43 45555567778
Q ss_pred CcceeeecccccccCCCCCcCCCCcceEEEeecceeecccCccccccCCceEEEeecccccccCchhccCCCC
Q 037027 121 FLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAE 193 (205)
Q Consensus 121 ~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~ 193 (205)
+|+.+.+..+.++.....+|..|.+|+.+.+..+ +......++..|++|+.+.+..+ ++.....+|.+++.
T Consensus 287 ~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~~ 357 (379)
T 4h09_A 287 NLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSSI 357 (379)
T ss_dssp TCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSSC
T ss_pred ccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCCC
Confidence 8888888777666555667888888888887655 33355667777888888777544 44344566666643
No 154
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.48 E-value=7e-06 Score=63.01 Aligned_cols=106 Identities=13% Similarity=0.180 Sum_probs=67.2
Q ss_pred CCCCccEEEcccccCCcccCcccccCCCCcceeeecccccccCCCCCcCCCCcceEEEeecceeecccCccccccCCceE
Q 037027 93 NKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKE 172 (205)
Q Consensus 93 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~ 172 (205)
.+..|+.+.+..+-. .+....|..+..|+.+.+.. .++.....+|..|.+|+.+.+..+ +......+|..|.+|+.
T Consensus 263 ~c~~L~~i~lp~~~~--~I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~ 338 (394)
T 4gt6_A 263 SCAYLASVKMPDSVV--SIGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLER 338 (394)
T ss_dssp TCSSCCEEECCTTCC--EECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCE
T ss_pred ecccccEEecccccc--eecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCE
Confidence 344555555544322 23333445566666666643 344344567778888888888765 33355677788888888
Q ss_pred EEeecccccccCchhccCCCCCcEEeccCCc
Q 037027 173 LYLVRNRLQGEIPRELSNLAELELMSLFDNE 203 (205)
Q Consensus 173 l~l~~~~l~~~~~~~l~~~~~L~~l~l~~n~ 203 (205)
+.+..+ ++.....+|.+|.+|+.+++.++.
T Consensus 339 i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 339 IAIPSS-VTKIPESAFSNCTALNNIEYSGSR 368 (394)
T ss_dssp EEECTT-CCBCCGGGGTTCTTCCEEEESSCH
T ss_pred EEECcc-cCEEhHhHhhCCCCCCEEEECCce
Confidence 888644 555556788888888888887653
No 155
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.46 E-value=7e-08 Score=65.38 Aligned_cols=82 Identities=12% Similarity=-0.003 Sum_probs=38.0
Q ss_pred CccEEEecCcccccCCCccccCCCCccEEEccccc-CCcccCcccccCC----CCcceeeecccc-cccCCCCCcCCCCc
Q 037027 72 TLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNA-LSGEIPANICSNL----PFLEYISLSQNM-FHGGIPSALSKCTY 145 (205)
Q Consensus 72 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~~~~----~~L~~l~l~~~~-~~~~~~~~~~~~~~ 145 (205)
.|+.|++++|.+++..-..+..+++|++|++++|. +++..-..+ ..+ +.|+.|++++|. +++.....+..+++
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L-~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERL-SQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHH-HTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHH-HhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 45555555555544333334445555555555552 432222222 221 245555555553 44332233444555
Q ss_pred ceEEEeecc
Q 037027 146 LQILGLSFN 154 (205)
Q Consensus 146 L~~l~l~~~ 154 (205)
|+.|++++|
T Consensus 141 L~~L~L~~c 149 (176)
T 3e4g_A 141 LKYLFLSDL 149 (176)
T ss_dssp CCEEEEESC
T ss_pred CCEEECCCC
Confidence 555555555
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.42 E-value=1.4e-08 Score=69.96 Aligned_cols=114 Identities=16% Similarity=0.166 Sum_probs=63.8
Q ss_pred cccCCCCccEEEcccc-cCCcccC----cccccCCCCcceeeecccccccC----CCCCcCCCCcceEEEeecceeecc-
Q 037027 90 FIFNKSSLQDLDLSYN-ALSGEIP----ANICSNLPFLEYISLSQNMFHGG----IPSALSKCTYLQILGLSFNDFSGA- 159 (205)
Q Consensus 90 ~l~~l~~L~~L~l~~~-~~~~~~~----~~~~~~~~~L~~l~l~~~~~~~~----~~~~~~~~~~L~~l~l~~~~~~~~- 159 (205)
.+...+.|++|++++| .+.+... ..+ ...+.|++|++++|.+.+. +.+.+...++|+.|++++|.+.+.
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L-~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g 109 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEAL-KTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG 109 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHH-TTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHH-HhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHH
Confidence 3445566777777776 6643211 122 3345677777777766531 223344455677777777766532
Q ss_pred ---cCccccccCCceEEEe--eccccccc----CchhccCCCCCcEEeccCCcC
Q 037027 160 ---IPKEIGNVTKLKELYL--VRNRLQGE----IPRELSNLAELELMSLFDNEL 204 (205)
Q Consensus 160 ---~~~~~~~~~~L~~l~l--~~~~l~~~----~~~~l~~~~~L~~l~l~~n~l 204 (205)
+...+...+.|++|++ ++|.+.+. +.+.+...++|++|++++|.+
T Consensus 110 ~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 110 ILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred HHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 2334445566777777 66666643 234444556677777776654
No 157
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.41 E-value=4.3e-06 Score=64.23 Aligned_cols=135 Identities=17% Similarity=0.202 Sum_probs=96.6
Q ss_pred ecCccccCCCCccEEEecCcccccCCCccccCCCCccEEEcccccCCcccCcccccCCCCcceeeecccccccCCCCCcC
Q 037027 62 SIPSATFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALS 141 (205)
Q Consensus 62 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~ 141 (205)
....+|..+..|+.+.+...... .....+..+..|+.+.+.. .+. .+....|.++.+|+.+.+..+ ++.....+|.
T Consensus 256 i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~~-~i~-~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~ 331 (394)
T 4gt6_A 256 IETHAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFSS-RIT-ELPESVFAGCISLKSIDIPEG-ITQILDDAFA 331 (394)
T ss_dssp ECTTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECCT-TCC-EECTTTTTTCTTCCEEECCTT-CCEECTTTTT
T ss_pred cccceeeecccccEEecccccce-ecCcccccccccccccCCC-ccc-ccCceeecCCCCcCEEEeCCc-ccEehHhHhh
Confidence 34567888889999998765443 5556677888999999864 454 677777789999999999765 5545567899
Q ss_pred CCCcceEEEeecceeecccCccccccCCceEEEeecccccccCchhccCCCCCcEEeccCCcC
Q 037027 142 KCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFDNEL 204 (205)
Q Consensus 142 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~L~~l~l~~n~l 204 (205)
.|.+|+.+.+..+ +......+|..|++|+.+++.++... ...+..+..|+.+.+..+.+
T Consensus 332 ~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~---~~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 332 GCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQ---WNAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp TCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHH---HHTCBCCCCC----------
T ss_pred CCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceee---hhhhhccCCCCEEEeCCCCE
Confidence 9999999999765 45466788999999999999988654 24667788888888876643
No 158
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.39 E-value=7.1e-06 Score=62.58 Aligned_cols=130 Identities=14% Similarity=0.125 Sum_probs=91.9
Q ss_pred ccCCCCccEEEecCcccccCCCccccCCCCccEEEcccccCCcccCcccccCCCCcceeeecccccccCCCCCcCCCCcc
Q 037027 67 TFITHTLKYVDLRGNQLSGAFPSFIFNKSSLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYL 146 (205)
Q Consensus 67 ~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L 146 (205)
+.....++.+.+...- .......+..+..|+.+.+..+ +. .+....+..+..++.+.+..+ +......++..+.+|
T Consensus 213 f~~~~~l~~i~~~~~~-~~i~~~~f~~~~~L~~i~lp~~-v~-~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L 288 (379)
T 4h09_A 213 FSYGKNLKKITITSGV-TTLGDGAFYGMKALDEIAIPKN-VT-SIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNL 288 (379)
T ss_dssp TTTCSSCSEEECCTTC-CEECTTTTTTCSSCCEEEECTT-CC-EECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTC
T ss_pred cccccccceeeeccce-eEEccccccCCccceEEEcCCC-cc-EeCccccceeehhcccccccc-ceecccccccccccc
Confidence 3444556666664432 2233445556778888887765 43 555556677788888888654 443455678899999
Q ss_pred eEEEeecceeecccCccccccCCceEEEeecccccccCchhccCCCCCcEEeccC
Q 037027 147 QILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLAELELMSLFD 201 (205)
Q Consensus 147 ~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~L~~l~l~~ 201 (205)
+.+.+.++.+.......+..+.+|+.+.+..+ ++.....+|.+|.+|+.+.+-.
T Consensus 289 ~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 289 TKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPK 342 (379)
T ss_dssp CEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCT
T ss_pred ccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECC
Confidence 99999888776677788899999999998754 6656678899999999888754
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.23 E-value=6.5e-07 Score=64.94 Aligned_cols=79 Identities=29% Similarity=0.395 Sum_probs=49.2
Q ss_pred CCCCcceeeeccccccc--CCCCCcCCCCcceEEEeecceeecccCccccccC--CceEEEeecccccccCc-------h
Q 037027 118 NLPFLEYISLSQNMFHG--GIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVT--KLKELYLVRNRLQGEIP-------R 186 (205)
Q Consensus 118 ~~~~L~~l~l~~~~~~~--~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~--~L~~l~l~~~~l~~~~~-------~ 186 (205)
.++.|+.|++++|.+++ .++..+..+++|+.|+|++|.+.+. ..+..+. +|++|++.+|++.+..+ .
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence 45667777777777764 2334455667777777777776543 2233333 77778888877765333 3
Q ss_pred hccCCCCCcEEe
Q 037027 187 ELSNLAELELMS 198 (205)
Q Consensus 187 ~l~~~~~L~~l~ 198 (205)
.+..+++|+.||
T Consensus 246 il~~~P~L~~LD 257 (267)
T 3rw6_A 246 IRERFPKLLRLD 257 (267)
T ss_dssp HHHHCTTCCEES
T ss_pred HHHHCcccCeEC
Confidence 456777777766
No 160
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.92 E-value=7.5e-06 Score=59.36 Aligned_cols=63 Identities=32% Similarity=0.326 Sum_probs=50.5
Q ss_pred CCCCcceEEEeecceeec--ccCccccccCCceEEEeecccccccCchhccCCC--CCcEEeccCCcCC
Q 037027 141 SKCTYLQILGLSFNDFSG--AIPKEIGNVTKLKELYLVRNRLQGEIPRELSNLA--ELELMSLFDNELQ 205 (205)
Q Consensus 141 ~~~~~L~~l~l~~~~~~~--~~~~~~~~~~~L~~l~l~~~~l~~~~~~~l~~~~--~L~~l~l~~n~l~ 205 (205)
..+++|+.|++++|.+.+ .++..+..+++|+.|+|++|.+++. ..+..++ +|++|++.+|++.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~ 233 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLC 233 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTG
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCc
Confidence 456889999999999976 3445667899999999999999854 3344444 9999999999873
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.30 E-value=1.7e-05 Score=54.69 Aligned_cols=86 Identities=13% Similarity=0.133 Sum_probs=42.6
Q ss_pred cCCCCccEEEecCc-cccc----CCCccccCCCCccEEEcccccCCcccCcccc---cCCCCcceeeecccccccC----
Q 037027 68 FITHTLKYVDLRGN-QLSG----AFPSFIFNKSSLQDLDLSYNALSGEIPANIC---SNLPFLEYISLSQNMFHGG---- 135 (205)
Q Consensus 68 ~~l~~L~~L~l~~~-~~~~----~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~---~~~~~L~~l~l~~~~~~~~---- 135 (205)
..-+.|+.|++.++ .+.+ .+.+.+..-..|+.|++.+|.+.+.....+. ..-..|+.|+++.|.|.+.
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a 117 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR 117 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence 34456666666654 4432 2233344455666666666666532222211 2234566666666655431
Q ss_pred CCCCcCCCCcceEEEeec
Q 037027 136 IPSALSKCTYLQILGLSF 153 (205)
Q Consensus 136 ~~~~~~~~~~L~~l~l~~ 153 (205)
+.+++..-+.|+.|++.+
T Consensus 118 la~aL~~N~tL~~L~L~n 135 (197)
T 1pgv_A 118 LLRSTLVTQSIVEFKADN 135 (197)
T ss_dssp HHHHTTTTCCCSEEECCC
T ss_pred HHHHHhhCCceeEEECCC
Confidence 223344445566666554
No 162
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.23 E-value=0.00053 Score=44.03 Aligned_cols=56 Identities=16% Similarity=0.191 Sum_probs=34.8
Q ss_pred eeeecccccc-cCCCCCcCCCCcceEEEeecceeecccCccccccCCceEEEeeccccc
Q 037027 124 YISLSQNMFH-GGIPSALSKCTYLQILGLSFNDFSGAIPKEIGNVTKLKELYLVRNRLQ 181 (205)
Q Consensus 124 ~l~l~~~~~~-~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~ 181 (205)
.++.++..++ ..+|..+ ..+++.|+|++|.+....+..+..+++|++|+|.+|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 4555565554 1234322 235777777777776555666667777777777777664
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.99 E-value=0.00017 Score=49.76 Aligned_cols=112 Identities=12% Similarity=0.115 Sum_probs=79.7
Q ss_pred ccCCCCccEEEcccc-cCCccc----CcccccCCCCcceeeecccccccC----CCCCcCCCCcceEEEeecceeecccC
Q 037027 91 IFNKSSLQDLDLSYN-ALSGEI----PANICSNLPFLEYISLSQNMFHGG----IPSALSKCTYLQILGLSFNDFSGAIP 161 (205)
Q Consensus 91 l~~l~~L~~L~l~~~-~~~~~~----~~~~~~~~~~L~~l~l~~~~~~~~----~~~~~~~~~~L~~l~l~~~~~~~~~~ 161 (205)
+..-+.|++|+++++ .+.+.. ...+ ..-..|+.|++++|.+.+. +.+.+..-+.|+.|+|++|.+.+...
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL-~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga 115 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAA-CNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELL 115 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHH-TTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHH
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHH-hhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHH
Confidence 345678999999985 775332 2233 4557899999999999753 33445667899999999999865433
Q ss_pred ----ccccccCCceEEEeecc---cccc----cCchhccCCCCCcEEeccCCc
Q 037027 162 ----KEIGNVTKLKELYLVRN---RLQG----EIPRELSNLAELELMSLFDNE 203 (205)
Q Consensus 162 ----~~~~~~~~L~~l~l~~~---~l~~----~~~~~l~~~~~L~~l~l~~n~ 203 (205)
..+...+.|++|+|.++ .+.+ .+.+++..-+.|+.|+++.|.
T Consensus 116 ~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 116 ARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred HHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 34455677999999865 4443 244666677889999998764
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.14 E-value=0.01 Score=37.88 Aligned_cols=36 Identities=28% Similarity=0.428 Sum_probs=16.9
Q ss_pred CccEEEcccccCCcccCcccccCCCCcceeeeccccc
Q 037027 96 SLQDLDLSYNALSGEIPANICSNLPFLEYISLSQNMF 132 (205)
Q Consensus 96 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~ 132 (205)
.+++|++++|.++ .++...|..+++|+.|++.+|.+
T Consensus 32 ~l~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 32 DTTELVLTGNNLT-ALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TCSEEECTTSCCS-SCCTTTGGGCTTCCEEECCSSCC
T ss_pred CCCEEECCCCcCC-ccChhhhhhccccCEEEecCCCe
Confidence 3445555555554 44444444444444444444433
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=84.51 E-value=4.4 Score=24.22 Aligned_cols=50 Identities=14% Similarity=0.107 Sum_probs=33.4
Q ss_pred CCcccccCCCCCCCCCCCcEEEeecCcceeecCccccCCCCccEEEecCcc
Q 037027 32 GLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSATFITHTLKYVDLRGNQ 82 (205)
Q Consensus 32 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 82 (205)
|..++.+-...|.++..|+.+.+..+ ++.....+|.++.+|+.+.+....
T Consensus 5 g~~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~~ 54 (100)
T 2lz0_A 5 GEPVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGED 54 (100)
T ss_dssp CCCCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCSC
T ss_pred CCccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCCC
Confidence 33445455566778888888887764 333566777888888888776643
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=81.52 E-value=4.2 Score=24.33 Aligned_cols=44 Identities=18% Similarity=0.169 Sum_probs=27.2
Q ss_pred ccCcccccCCCCcceeeecccccccCCCCCcCCCCcceEEEeecc
Q 037027 110 EIPANICSNLPFLEYISLSQNMFHGGIPSALSKCTYLQILGLSFN 154 (205)
Q Consensus 110 ~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~ 154 (205)
.+....|.++..|+.+.+-.+ ++.....+|..|.+|+.+.+...
T Consensus 10 ~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 10 GMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp SSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred EecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 455555566777777777554 33344566777777777776553
Done!