BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037028
(503 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3CYY|A Chain A, The Crystal Structure Of Zo-1 Pdz2 In Complex With The
Cx43 Peptide
pdb|3CYY|B Chain B, The Crystal Structure Of Zo-1 Pdz2 In Complex With The
Cx43 Peptide
Length = 92
Score = 31.2 bits (69), Expect = 1.3, Method: Composition-based stats.
Identities = 20/64 (31%), Positives = 36/64 (56%), Gaps = 8/64 (12%)
Query: 303 GLKLNFEFLAVEKSLETLQAKDINVEDGE-VLVMN-------SILELHCVVKESRGALNS 354
GL+L E S ++L A+D N+++G+ VL +N S+ + +++ S+G L
Sbjct: 18 GLRLASHIFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMSLTDAKTLIERSKGKLKM 77
Query: 355 VLQR 358
V+QR
Sbjct: 78 VVQR 81
>pdb|3EB8|A Chain A, Vira
pdb|3EB8|B Chain B, Vira
Length = 358
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 48/125 (38%), Gaps = 10/125 (8%)
Query: 145 RDKAHASALLSELRVNALVFGTSFQRV-ASCFVQGLSDRLALVQPLGAVGVVGSAAKSMA 203
+D A SAL S + + +S + + A + + +RL + + G K A
Sbjct: 224 QDPAFISALTSAFWQSLHITSSSVEHIYAQIMSENIENRLNFMPEQRVINNCGHIIKINA 283
Query: 204 ITSERDESLSL----VYEICPQIQFGHFVANASILEAFEGESLVHVVDLGMTLGL----- 254
+ + D ++S YE+ I H N + E LVH L + GL
Sbjct: 284 VVPKNDTAISASGGRAYEVSSSILPSHITCNGVGINKIETSYLVHAGTLPSSEGLRNAIP 343
Query: 255 PHGRQ 259
P RQ
Sbjct: 344 PESRQ 348
>pdb|2RCZ|A Chain A, Structure Of The Second Pdz Domain Of Zo-1
pdb|2RCZ|B Chain B, Structure Of The Second Pdz Domain Of Zo-1
Length = 81
Score = 30.8 bits (68), Expect = 1.8, Method: Composition-based stats.
Identities = 18/64 (28%), Positives = 35/64 (54%), Gaps = 8/64 (12%)
Query: 303 GLKLNFEFLAVEKSLETLQAKDINVEDGEVLVM--------NSILELHCVVKESRGALNS 354
GL+L E S ++L A+D N+++G+V++ S+ + +++ S+G L
Sbjct: 16 GLRLASHIFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMSLTDAKTLIERSKGKLKM 75
Query: 355 VLQR 358
V+QR
Sbjct: 76 VVQR 79
>pdb|4FMB|A Chain A, Vira-Rab1 Complex Structure
pdb|4FMB|C Chain C, Vira-Rab1 Complex Structure
pdb|4FMB|E Chain E, Vira-Rab1 Complex Structure
Length = 361
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 48/125 (38%), Gaps = 10/125 (8%)
Query: 145 RDKAHASALLSELRVNALVFGTSFQRV-ASCFVQGLSDRLALVQPLGAVGVVGSAAKSMA 203
+D A SAL S + + +S + + A + + +RL + + G K A
Sbjct: 227 QDPAFISALTSAFWQSLHITSSSVEHIYAQIMSENIENRLNFMPEQRVINNCGHIIKINA 286
Query: 204 ITSERDESLSL----VYEICPQIQFGHFVANASILEAFEGESLVHVVDLGMTLGL----- 254
+ + D ++S YE+ I H N + E LVH L + GL
Sbjct: 287 VVPKNDTAISASGGRAYEVSSSILPSHITCNGVGINKIETSYLVHAGTLPSSEGLRNAIP 346
Query: 255 PHGRQ 259
P RQ
Sbjct: 347 PESRQ 351
>pdb|2JWE|A Chain A, Solution Structure Of The Second Pdz Domain From Human
Zonula Occludens-1: A Dimeric Form With 3d Domain
Swapping
pdb|2JWE|B Chain B, Solution Structure Of The Second Pdz Domain From Human
Zonula Occludens-1: A Dimeric Form With 3d Domain
Swapping
Length = 88
Score = 30.8 bits (68), Expect = 1.9, Method: Composition-based stats.
Identities = 18/64 (28%), Positives = 35/64 (54%), Gaps = 8/64 (12%)
Query: 303 GLKLNFEFLAVEKSLETLQAKDINVEDGEVLVM--------NSILELHCVVKESRGALNS 354
GL+L E S ++L A+D N+++G+V++ S+ + +++ S+G L
Sbjct: 15 GLRLASHIFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMSLTDAKTLIERSKGKLKM 74
Query: 355 VLQR 358
V+QR
Sbjct: 75 VVQR 78
>pdb|3EE1|A Chain A, Novel Fold Of Vira, A Type Iii Secretion System Effector
Protein From Shigella Flexneri
pdb|3EE1|B Chain B, Novel Fold Of Vira, A Type Iii Secretion System Effector
Protein From Shigella Flexneri
Length = 400
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 47/125 (37%), Gaps = 10/125 (8%)
Query: 145 RDKAHASALLSELRVNALVFGTSFQRV-ASCFVQGLSDRLALVQPLGAVGVVGSAAKSMA 203
+D A SAL S + + +S + + A + + +RL + G K A
Sbjct: 266 QDPAFISALTSAFWQSLHITSSSVEHIYAQIXSENIENRLNFXPEQRVINNCGHIIKINA 325
Query: 204 ITSERDESLSL----VYEICPQIQFGHFVANASILEAFEGESLVHVVDLGMTLGL----- 254
+ + D ++S YE+ I H N + E LVH L + GL
Sbjct: 326 VVPKNDTAISASGGRAYEVSSSILPSHITCNGVGINKIETSYLVHAGTLPSSEGLRNAIP 385
Query: 255 PHGRQ 259
P RQ
Sbjct: 386 PESRQ 390
>pdb|4ASK|A Chain A, Crystal Structure Of Jmjd3 With Gsk-J1
pdb|4ASK|B Chain B, Crystal Structure Of Jmjd3 With Gsk-J1
Length = 510
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 12/48 (25%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
Query: 244 HVVDLGMTLGLPHGRQWHSLMQSLVNRSGKVPKRLKITGVGNCSERLG 291
H++ G + L ++W +Q L+ K+P +++T GN +G
Sbjct: 185 HIIKFGTNIDLSDAKRWKPQLQELL----KLPAFMRVTSTGNMLSHVG 228
>pdb|2XUE|A Chain A, Crystal Structure Of Jmjd3
pdb|2XUE|B Chain B, Crystal Structure Of Jmjd3
Length = 509
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 12/48 (25%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
Query: 244 HVVDLGMTLGLPHGRQWHSLMQSLVNRSGKVPKRLKITGVGNCSERLG 291
H++ G + L ++W +Q L+ K+P +++T GN +G
Sbjct: 184 HIIKFGTNIDLSDAKRWKPQLQELL----KLPAFMRVTSTGNMLSHVG 227
>pdb|4EYU|A Chain A, The Free Structure Of The Mouse C-Terminal Domain Of Kdm6b
pdb|4EYU|B Chain B, The Free Structure Of The Mouse C-Terminal Domain Of Kdm6b
pdb|4EZ4|A Chain A, Free Kdm6b Structure
pdb|4EZ4|B Chain B, Free Kdm6b Structure
pdb|4EZH|A Chain A, The Crystal Structure Of Kdm6b Bound With H3k27me3 Peptide
pdb|4EZH|B Chain B, The Crystal Structure Of Kdm6b Bound With H3k27me3 Peptide
Length = 486
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 12/48 (25%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
Query: 244 HVVDLGMTLGLPHGRQWHSLMQSLVNRSGKVPKRLKITGVGNCSERLG 291
H++ G + L ++W +Q L+ K+P +++T GN +G
Sbjct: 167 HIIKFGTNIDLSDAKRWKPQLQELL----KLPAFMRVTSTGNMLSHVG 210
>pdb|3HXJ|A Chain A, Crystal Structure Of Pyrrolo-quinoline Quinone (pqq_dh)
From Methanococcus Maripaludis, Northeast Structural
Genomics Consortium Target Mrr86
pdb|3HXJ|B Chain B, Crystal Structure Of Pyrrolo-quinoline Quinone (pqq_dh)
From Methanococcus Maripaludis, Northeast Structural
Genomics Consortium Target Mrr86
pdb|3HXJ|C Chain C, Crystal Structure Of Pyrrolo-quinoline Quinone (pqq_dh)
From Methanococcus Maripaludis, Northeast Structural
Genomics Consortium Target Mrr86
pdb|3HXJ|D Chain D, Crystal Structure Of Pyrrolo-quinoline Quinone (pqq_dh)
From Methanococcus Maripaludis, Northeast Structural
Genomics Consortium Target Mrr86
Length = 330
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 405 KYDTKRAKIEQFYFAEEIKNIVSCEGPARVERHERVDQWRRRMSRAGFQSVPI 457
++DTK+A + F E+I + S +G + ++WR + +A + PI
Sbjct: 92 RFDTKKAIVSDFTIFEDILYVTSXDGHLYAINTDGTEKWRFKTKKA-IYATPI 143
>pdb|3TJZ|C Chain C, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
pdb|3TJZ|F Chain F, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
Length = 153
Score = 29.3 bits (64), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 54/116 (46%), Gaps = 9/116 (7%)
Query: 309 EFLAVEKSLETLQAKDINVEDGEVLVMNSILELHCVVKESRGALNSVLQRLHQLSPKVVM 368
E L +E SL T++A I DG+ L + + VKE + ++ + H+ ++ +
Sbjct: 2 EALILEPSLYTVKAILILDNDGDRLFAKYYDDTYPSVKEQKAFEKNIFNKTHRTDSEIAL 61
Query: 369 L----VEQDSSHNGPFF-LGRFME----ALHYYSAIFDSLDAMLPKYDTKRAKIEQ 415
L V SS + F+ +G E + + +FDSL ML K KRA +E
Sbjct: 62 LEGLTVVYKSSIDLYFYVIGSSYENELMLMTVLNCLFDSLSQMLRKNVEKRALLEN 117
>pdb|2HF6|A Chain A, Solution Structure Of Human Zeta-Cop
Length = 149
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 54/116 (46%), Gaps = 9/116 (7%)
Query: 309 EFLAVEKSLETLQAKDINVEDGEVLVMNSILELHCVVKESRGALNSVLQRLHQLSPKVVM 368
E L +E SL T++A I DG+ L + + VKE + ++ + H+ ++ +
Sbjct: 2 EALILEPSLYTVKAILILDNDGDRLFAKYYDDTYPSVKEQKAFEKNIFNKTHRTDSEIAL 61
Query: 369 L----VEQDSSHNGPFF-LGRFME----ALHYYSAIFDSLDAMLPKYDTKRAKIEQ 415
L V SS + F+ +G E + + +FDSL ML K KRA +E
Sbjct: 62 LEGLTVVYKSSIDLYFYVIGSSYENELMLMAVLNCLFDSLSQMLRKNVEKRALLEN 117
>pdb|2XXZ|A Chain A, Crystal Structure Of The Human Jmjd3 Jumonji Domain
pdb|2XXZ|B Chain B, Crystal Structure Of The Human Jmjd3 Jumonji Domain
Length = 332
Score = 29.3 bits (64), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 12/48 (25%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
Query: 244 HVVDLGMTLGLPHGRQWHSLMQSLVNRSGKVPKRLKITGVGNCSERLG 291
H++ G + L ++W +Q L+ K+P +++T GN +G
Sbjct: 151 HIIKFGTNIDLSDAKRWKPQLQELL----KLPAFMRVTSTGNMLSHVG 194
>pdb|1O03|A Chain A, Structure Of Pentavalent Phosphorous Intermediate Of An
Enzyme Catalyzed Phosphoryl Transfer Reaction Observed
On Cocrystallization With Glucose 6-Phosphate
pdb|1O08|A Chain A, Structure Of Pentavalent Phosphorous Intermediate Of An
Enzyme Catalyzed Phosphoryl Transfer Reaction Observed
On Cocrystallization With Glucose 1-Phosphate
pdb|1Z4N|A Chain A, Structure Of Beta-phosphoglucomutase With Inhibitor Bound
Alpha-galactose 1-phosphate Cocrystallized With Fluoride
pdb|1Z4N|B Chain B, Structure Of Beta-phosphoglucomutase With Inhibitor Bound
Alpha-galactose 1-phosphate Cocrystallized With Fluoride
pdb|1Z4O|A Chain A, Structure Of Beta-Phosphoglucomutase With Inhibitor Bound
Alpha-Galactose 1-Phosphate
pdb|1Z4O|B Chain B, Structure Of Beta-Phosphoglucomutase With Inhibitor Bound
Alpha-Galactose 1-Phosphate
pdb|1ZOL|A Chain A, Native Beta-Pgm
pdb|2WF5|A Chain A, Structure Of Beta-Phosphoglucomutase Inhibited With
Glucose- 6-Phospahte And Trifluoromagnesate
pdb|2WHE|A Chain A, Structure Of Native Beta-Phosphoglucomutase In An Open
Conformation Without Bound Ligands.
pdb|2WF7|A Chain A, Structure Of Beta-Phosphoglucomutase Inhibited With
Glucose- 6-Phosphonate And Aluminium Tetrafluoride
pdb|2WF6|A Chain A, Structure Of Beta-Phosphoglucomutase Inhibited With
Glucose- 6-Phospahte And Aluminium Tetrafluoride
pdb|2WF8|A Chain A, Structure Of Beta-Phosphoglucomutase Inhibited With
Glucose- 6-Phosphate, Glucose-1-Phosphate And Beryllium
Trifluoride
pdb|2WF9|A Chain A, Structure Of Beta-Phosphoglucomutase Inhibited With
Glucose- 6-Phosphate, And Beryllium Trifluoride, Crystal
Form 2
pdb|2WFA|A Chain A, Structure Of Beta-Phosphoglucomutase Inhibited With
Beryllium Trifluoride, In An Open Conformation
Length = 221
Score = 28.9 bits (63), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 355 VLQRLHQLSPKVVMLVEQDSSHNGPFFLGRFMEALHYYSAIFD 397
+LQ L L + + +S NGPF L R M Y+ AI D
Sbjct: 96 ILQLLKDLRSNKIKIALASASKNGPFLLER-MNLTGYFDAIAD 137
>pdb|1LVH|A Chain A, The Structure Of Phosphorylated Beta-phosphoglucomutase
From Lactoccocus Lactis To 2.3 Angstrom Resolution
pdb|1LVH|B Chain B, The Structure Of Phosphorylated Beta-phosphoglucomutase
From Lactoccocus Lactis To 2.3 Angstrom Resolution
Length = 221
Score = 28.9 bits (63), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 355 VLQRLHQLSPKVVMLVEQDSSHNGPFFLGRFMEALHYYSAIFD 397
+LQ L L + + +S NGPF L R M Y+ AI D
Sbjct: 96 ILQLLKDLRSNKIKIALASASKNGPFLLER-MNLTGYFDAIAD 137
>pdb|3FM9|A Chain A, Analysis Of The Structural Determinants Underlying
Discrimination Between Substrate And Solvent In Beta-
Phosphoglucomutase Catalysis
Length = 221
Score = 28.9 bits (63), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 355 VLQRLHQLSPKVVMLVEQDSSHNGPFFLGRFMEALHYYSAIFD 397
+LQ L L + + +S NGPF L R M Y+ AI D
Sbjct: 96 ILQLLKDLRSNKIKIALASASKNGPFLLER-MNLTGYFDAIAD 137
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.134 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,283,935
Number of Sequences: 62578
Number of extensions: 485821
Number of successful extensions: 1060
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 1054
Number of HSP's gapped (non-prelim): 18
length of query: 503
length of database: 14,973,337
effective HSP length: 103
effective length of query: 400
effective length of database: 8,527,803
effective search space: 3411121200
effective search space used: 3411121200
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)