Query 037028
Match_columns 503
No_of_seqs 162 out of 695
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 07:53:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037028.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037028hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03514 GRAS: GRAS domain fam 100.0 2E-109 3E-114 867.2 37.9 364 131-501 1-374 (374)
2 PRK15451 tRNA cmo(5)U34 methyl 97.1 0.041 8.8E-07 54.7 18.1 193 216-456 33-227 (247)
3 TIGR00740 methyltransferase, p 96.3 0.19 4.2E-06 49.3 15.9 106 241-370 53-159 (239)
4 TIGR02752 MenG_heptapren 2-hep 95.3 2.2 4.7E-05 41.3 18.8 179 231-457 35-216 (231)
5 PF01209 Ubie_methyltran: ubiE 93.8 1.3 2.7E-05 44.2 13.2 180 232-458 38-219 (233)
6 TIGR02716 C20_methyl_CrtF C-20 93.3 1.5 3.2E-05 44.8 13.2 118 230-374 138-257 (306)
7 PF12847 Methyltransf_18: Meth 93.0 0.66 1.4E-05 39.3 8.5 105 244-371 4-110 (112)
8 PLN02233 ubiquinone biosynthes 92.1 14 0.00031 37.1 18.9 132 229-385 61-194 (261)
9 COG2226 UbiE Methylase involve 91.2 18 0.00039 36.4 17.8 190 218-456 27-221 (238)
10 PF13489 Methyltransf_23: Meth 90.4 3.2 7E-05 37.0 10.5 98 239-375 20-119 (161)
11 PF13847 Methyltransf_31: Meth 90.0 2.7 6E-05 38.1 9.8 108 240-373 2-112 (152)
12 PRK06202 hypothetical protein; 89.6 8.1 0.00018 37.7 13.4 109 238-370 57-165 (232)
13 TIGR01934 MenG_MenH_UbiE ubiqu 86.9 28 0.0006 32.9 17.4 118 229-374 27-146 (223)
14 TIGR00477 tehB tellurite resis 86.1 6.4 0.00014 37.7 10.1 111 228-367 17-128 (195)
15 PF13649 Methyltransf_25: Meth 85.7 3.2 6.9E-05 34.9 6.9 94 245-361 1-95 (101)
16 PLN02336 phosphoethanolamine N 85.5 37 0.0008 36.9 16.7 114 229-371 254-368 (475)
17 PRK08317 hypothetical protein; 85.0 35 0.00077 32.3 16.4 114 233-373 11-126 (241)
18 PTZ00098 phosphoethanolamine N 83.8 44 0.00096 33.6 15.3 116 227-370 38-154 (263)
19 TIGR03438 probable methyltrans 83.7 15 0.00032 37.8 12.0 121 233-373 57-178 (301)
20 PLN02396 hexaprenyldihydroxybe 83.6 22 0.00048 37.2 13.4 100 242-371 132-234 (322)
21 COG2230 Cfa Cyclopropane fatty 82.9 14 0.00031 38.2 11.3 112 226-365 57-169 (283)
22 PRK14103 trans-aconitate 2-met 82.2 14 0.00031 36.5 11.0 105 232-371 20-125 (255)
23 PLN02336 phosphoethanolamine N 81.9 20 0.00044 38.9 12.9 137 231-398 27-172 (475)
24 PLN02585 magnesium protoporphy 80.4 42 0.00092 35.1 14.0 103 241-370 144-248 (315)
25 PF02353 CMAS: Mycolic acid cy 80.2 16 0.00034 37.4 10.5 113 231-371 52-165 (273)
26 PRK01683 trans-aconitate 2-met 78.4 18 0.00039 35.7 10.2 111 230-372 20-130 (258)
27 PRK00216 ubiE ubiquinone/menaq 76.5 72 0.0016 30.4 17.1 116 233-373 43-160 (239)
28 PRK06922 hypothetical protein; 76.4 1.1E+02 0.0023 35.6 16.5 110 242-372 419-538 (677)
29 PRK12335 tellurite resistance 75.7 25 0.00053 35.8 10.5 107 232-367 111-218 (287)
30 PRK11036 putative S-adenosyl-L 75.1 24 0.00051 35.0 10.0 112 232-370 36-147 (255)
31 PF08241 Methyltransf_11: Meth 74.8 14 0.0003 29.5 7.0 75 277-369 19-94 (95)
32 PRK11207 tellurite resistance 74.7 40 0.00086 32.3 11.2 111 229-368 18-130 (197)
33 TIGR02021 BchM-ChlM magnesium 71.5 46 0.00099 32.0 10.8 116 224-370 36-156 (219)
34 COG4106 Tam Trans-aconitate me 71.4 14 0.00031 37.1 7.2 112 236-379 25-136 (257)
35 PRK09489 rsmC 16S ribosomal RN 70.7 59 0.0013 34.3 12.2 102 244-370 199-301 (342)
36 smart00138 MeTrc Methyltransfe 70.5 9.4 0.0002 38.6 6.0 55 238-296 96-151 (264)
37 PF09243 Rsm22: Mitochondrial 70.2 26 0.00056 35.7 9.1 139 225-389 13-156 (274)
38 TIGR02081 metW methionine bios 68.8 52 0.0011 31.1 10.4 22 437-458 145-166 (194)
39 smart00650 rADc Ribosomal RNA 67.8 40 0.00086 31.2 9.2 110 231-373 3-114 (169)
40 PRK10909 rsmD 16S rRNA m(2)G96 66.6 70 0.0015 31.1 10.9 106 243-377 55-164 (199)
41 PF03848 TehB: Tellurite resis 66.6 95 0.0021 30.3 11.7 111 231-370 20-131 (192)
42 COG0052 RpsB Ribosomal protein 65.7 1.8 3.9E-05 43.8 -0.4 112 240-375 35-168 (252)
43 TIGR03587 Pse_Me-ase pseudamin 65.6 1.3E+02 0.0029 29.0 13.8 100 244-374 46-145 (204)
44 PRK05785 hypothetical protein; 62.7 1.4E+02 0.0031 29.3 12.4 94 242-372 52-146 (226)
45 PF00891 Methyltransf_2: O-met 62.0 1E+02 0.0023 30.0 11.4 111 231-376 90-204 (241)
46 TIGR03439 methyl_EasF probable 62.0 1.1E+02 0.0023 32.2 11.9 139 243-398 78-234 (319)
47 PRK11705 cyclopropane fatty ac 59.5 91 0.002 33.4 11.1 108 231-370 157-265 (383)
48 PF03291 Pox_MCEL: mRNA cappin 58.8 65 0.0014 33.9 9.7 119 241-374 62-189 (331)
49 PLN02244 tocopherol O-methyltr 58.7 1.4E+02 0.0031 31.2 12.3 102 241-371 118-223 (340)
50 PF13679 Methyltransf_32: Meth 57.3 29 0.00064 31.4 6.1 50 237-296 21-72 (141)
51 PRK11873 arsM arsenite S-adeno 54.5 1.1E+02 0.0025 30.3 10.4 101 243-371 79-183 (272)
52 PRK00107 gidB 16S rRNA methylt 51.4 2.3E+02 0.005 27.2 13.3 97 242-371 46-144 (187)
53 PRK15001 SAM-dependent 23S rib 51.2 1.6E+02 0.0036 31.6 11.4 120 233-372 220-340 (378)
54 TIGR02072 BioC biotin biosynth 49.6 1.2E+02 0.0026 28.7 9.4 100 241-371 34-134 (240)
55 TIGR00091 tRNA (guanine-N(7)-) 48.5 85 0.0019 29.8 8.0 114 242-373 17-133 (194)
56 TIGR00537 hemK_rel_arch HemK-r 48.5 2.3E+02 0.0049 26.3 11.3 49 244-310 22-70 (179)
57 PRK00274 ksgA 16S ribosomal RN 48.3 56 0.0012 33.1 7.0 67 217-297 13-84 (272)
58 smart00828 PKS_MT Methyltransf 47.9 1.1E+02 0.0024 29.3 8.8 99 244-369 2-101 (224)
59 PRK13944 protein-L-isoaspartat 47.2 2.3E+02 0.005 27.2 10.9 56 232-298 63-118 (205)
60 PRK15068 tRNA mo(5)U34 methylt 46.5 2.4E+02 0.0052 29.4 11.6 112 233-371 114-225 (322)
61 PLN02232 ubiquinone biosynthes 44.8 2.5E+02 0.0055 25.8 12.6 81 281-373 1-83 (160)
62 PF08242 Methyltransf_12: Meth 44.5 22 0.00048 29.4 2.9 23 277-299 20-42 (99)
63 PRK07580 Mg-protoporphyrin IX 44.5 2.5E+02 0.0053 26.8 10.6 98 241-369 63-163 (230)
64 PRK10258 biotin biosynthesis p 44.3 2.5E+02 0.0055 27.4 10.9 54 229-296 30-83 (251)
65 TIGR00138 gidB 16S rRNA methyl 42.9 3E+02 0.0065 26.1 11.4 96 243-371 44-141 (181)
66 TIGR00452 methyltransferase, p 42.7 3E+02 0.0066 28.8 11.6 114 231-371 111-224 (314)
67 PRK13255 thiopurine S-methyltr 42.4 2.9E+02 0.0064 27.1 10.9 112 242-381 38-168 (218)
68 TIGR01626 ytfJ_HI0045 conserve 41.2 88 0.0019 30.3 6.8 114 241-362 59-182 (184)
69 COG2242 CobL Precorrin-6B meth 39.2 46 0.00099 32.5 4.5 54 236-301 29-82 (187)
70 PF07521 RMMBL: RNA-metabolisi 38.9 51 0.0011 24.1 3.7 38 331-371 1-39 (43)
71 COG0123 AcuC Deacetylases, inc 38.7 23 0.0005 37.5 2.6 31 229-263 144-174 (340)
72 PRK03646 dadX alanine racemase 37.1 74 0.0016 33.6 6.1 54 241-302 117-177 (355)
73 PLN02490 MPBQ/MSBQ methyltrans 35.9 2.2E+02 0.0047 30.2 9.3 100 241-370 113-213 (340)
74 PF02056 Glyco_hydro_4: Family 35.3 1E+02 0.0023 29.8 6.3 58 257-315 9-66 (183)
75 TIGR02085 meth_trns_rumB 23S r 33.7 3.4E+02 0.0074 28.8 10.5 99 244-373 236-335 (374)
76 COG2227 UbiG 2-polyprenyl-3-me 33.2 1.4E+02 0.0031 30.3 7.1 100 240-369 58-158 (243)
77 COG1500 Predicted exosome subu 32.4 1.2E+02 0.0026 30.5 6.3 59 408-468 91-151 (234)
78 PRK00811 spermidine synthase; 32.1 4.7E+02 0.01 26.6 10.8 109 244-371 79-190 (283)
79 COG1341 Predicted GTPase or GT 31.9 4.2E+02 0.0091 29.0 10.7 82 331-424 173-254 (398)
80 PTZ00063 histone deacetylase; 31.5 32 0.0007 37.7 2.4 59 330-396 251-316 (436)
81 TIGR02469 CbiT precorrin-6Y C5 31.4 1.3E+02 0.0029 25.2 5.8 44 244-299 22-65 (124)
82 PRK14896 ksgA 16S ribosomal RN 31.0 2E+02 0.0043 28.8 7.8 57 227-297 11-71 (258)
83 PRK00121 trmB tRNA (guanine-N( 31.0 4.1E+02 0.0089 25.4 9.8 111 241-370 40-154 (202)
84 TIGR01716 RGG_Cterm transcript 31.0 85 0.0018 30.0 5.0 53 131-183 127-180 (220)
85 PRK04148 hypothetical protein; 30.5 1E+02 0.0022 28.4 5.1 47 233-292 8-54 (134)
86 PRK03522 rumB 23S rRNA methylu 29.1 4.4E+02 0.0096 27.1 10.2 100 243-373 175-275 (315)
87 TIGR00755 ksgA dimethyladenosi 28.9 4E+02 0.0088 26.3 9.6 52 231-296 19-70 (253)
88 TIGR01983 UbiG ubiquinone bios 28.1 5.2E+02 0.011 24.4 14.0 100 242-370 46-147 (224)
89 TIGR02129 hisA_euk phosphoribo 26.1 62 0.0013 33.0 3.1 26 238-271 50-75 (253)
90 cd01822 Lysophospholipase_L1_l 25.0 5E+02 0.011 23.2 12.0 21 351-371 89-109 (177)
91 PTZ00346 histone deacetylase; 24.8 48 0.001 36.3 2.2 60 331-398 270-336 (429)
92 PF11312 DUF3115: Protein of u 24.1 60 0.0013 34.1 2.7 132 239-376 84-247 (315)
93 PRK13168 rumA 23S rRNA m(5)U19 24.0 5.8E+02 0.013 27.7 10.4 109 235-373 291-401 (443)
94 KOG1165 Casein kinase (serine/ 23.8 43 0.00093 36.0 1.5 12 239-250 164-175 (449)
95 COG4952 Predicted sugar isomer 23.8 4E+02 0.0087 28.1 8.4 116 295-426 110-231 (430)
96 PF07088 GvpD: GvpD gas vesicl 23.6 1.7E+02 0.0038 32.2 6.0 41 259-312 114-154 (484)
97 PF00367 PTS_EIIB: phosphotran 23.5 1.5E+02 0.0032 21.1 3.7 21 231-251 2-22 (35)
98 TIGR03534 RF_mod_PrmC protein- 23.2 6.7E+02 0.015 24.0 10.8 78 241-340 87-165 (251)
99 PTZ00338 dimethyladenosine tra 22.7 3.4E+02 0.0075 28.0 7.9 53 233-299 28-80 (294)
100 TIGR03840 TMPT_Se_Te thiopurin 22.6 7.2E+02 0.016 24.2 10.1 35 243-291 36-70 (213)
101 PF02283 CobU: Cobinamide kina 22.4 3.1E+02 0.0067 25.9 6.9 122 261-390 12-143 (167)
102 cd05296 GH4_P_beta_glucosidase 21.9 6.2E+02 0.013 27.6 10.0 54 260-314 12-67 (419)
103 PF05175 MTS: Methyltransferas 21.9 2E+02 0.0044 26.6 5.6 116 229-368 19-136 (170)
104 PRK07402 precorrin-6B methylas 21.8 2.5E+02 0.0055 26.4 6.4 63 225-299 24-86 (196)
105 PRK14024 phosphoribosyl isomer 21.7 89 0.0019 31.1 3.3 51 238-297 44-94 (241)
106 PRK02399 hypothetical protein; 21.6 7.7E+02 0.017 27.1 10.4 142 217-389 247-398 (406)
107 PRK05134 bifunctional 3-demeth 21.4 7.2E+02 0.016 23.8 16.3 104 239-371 46-150 (233)
108 PF01220 DHquinase_II: Dehydro 21.3 1.4E+02 0.0031 27.8 4.3 53 288-343 25-80 (140)
109 PLN02446 (5-phosphoribosyl)-5- 21.2 97 0.0021 31.8 3.5 27 238-269 55-81 (262)
110 PF11455 DUF3018: Protein of 20.9 53 0.0011 26.8 1.2 21 438-458 3-23 (65)
111 cd05298 GH4_GlvA_pagL_like Gly 20.7 1.9E+02 0.0042 31.7 5.9 60 261-321 14-73 (437)
No 1
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=100.00 E-value=1.5e-109 Score=867.19 Aligned_cols=364 Identities=48% Similarity=0.806 Sum_probs=335.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCchhhHHHHHHHHHHhhhhhccCCCCcccccccchhhhchhhHHH
Q 037028 131 LVQQLIACAEAVACRDKAHASALLSELRVNALVFGTSFQRVASCFVQGLSDRLALVQPLGAVGVVGSAAKSMAITSERDE 210 (503)
Q Consensus 131 L~~LLl~CAeAV~~gd~~~A~~lL~~L~~~as~~Gd~~qRlA~yF~eAL~~Rl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (503)
|+|||++||+||+.||.+.|+.+|++|++++||+|||+||||+||++||.+||.+.++..... .++.........+...
T Consensus 1 L~~lLl~cA~Av~~~~~~~A~~lL~~l~~~as~~g~~~qRla~yF~eAL~~Rl~~~~~~~~~~-~~~~~~~~~~~~~~~~ 79 (374)
T PF03514_consen 1 LVQLLLACAEAVAAGDFARAQELLARLRQLASPTGDPMQRLAAYFAEALAARLSGSGPGLYSA-LPPSSPSPSESSEQLA 79 (374)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhHHHHHhccCcccccC-CCCccccccchHHHHH
Confidence 689999999999999999999999999999999999999999999999999999865421111 1111100001234578
Q ss_pred HHHHHHHhccchhhhhHhhhHHHHhhhcCCceeEEeeeccccCCCCccchhhhHHHHhcCCCCCCCcEEEeeecC----C
Q 037028 211 SLSLVYEICPQIQFGHFVANASILEAFEGESLVHVVDLGMTLGLPHGRQWHSLMQSLVNRSGKVPKRLKITGVGN----C 286 (503)
Q Consensus 211 A~~~~~e~~P~~kfahftANqAILEA~~g~~~VHIVDfgi~~G~~~G~QWpsLiqaLA~R~ggpP~~LRITgI~~----~ 286 (503)
||++||+.|||+||||||||||||||++|+++||||||||+ +|+|||+|||+||.|++||| +||||||++ +
T Consensus 80 a~~~~~~~~P~~~fa~~taNqaIleA~~g~~~vHIID~~i~----~G~QW~~LiqaLa~R~~gpp-~LrIT~i~~~~~~~ 154 (374)
T PF03514_consen 80 AYQLFYELSPFLKFAHFTANQAILEAFEGERRVHIIDFGIG----FGVQWPSLIQALASRPGGPP-SLRITGIGPPNSGS 154 (374)
T ss_pred HHHHHHHHhhHHhhhhhchhHHHHHHhccCcceEEEeccCC----cchHHHHHHHHHhcCCCCCC-eEEEEeccCCCCCc
Confidence 99999999999999999999999999999999999999985 67999999999999999999 899999999 5
Q ss_pred chhHHHHHHHHHHHHhhCCCcEEEeee-cccccccCcccccccCCcEEEEEeccccccccccccc---hHHHHHHHHHhc
Q 037028 287 SERLGEIGDELKRYADGLKLNFEFLAV-EKSLETLQAKDINVEDGEVLVMNSILELHCVVKESRG---ALNSVLQRLHQL 362 (503)
Q Consensus 287 ~~~l~~tg~rL~~fA~~lgipFeF~~v-~~~le~l~~~~l~~~~~EaLaVN~~~~Lh~l~~es~~---~~~~~L~~Ir~L 362 (503)
.+.+++||++|.+||+++||||||++| ..++|++++++|++++||+|||||+|+||||++++.. +++.||+.||+|
T Consensus 155 ~~~l~~~g~rL~~fA~~lgv~fef~~v~~~~~e~l~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~ir~L 234 (374)
T PF03514_consen 155 ADELQETGRRLAEFARSLGVPFEFHPVVVESLEDLDPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRVIRSL 234 (374)
T ss_pred HHHHHHHHHHHHHHHHHcCccEEEEecccCchhhCCHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHHHHhc
Confidence 789999999999999999999999995 6789999999999999999999999999999976543 578899999999
Q ss_pred CCcEEEEEeecCCCCCCchHHHHHHHHHHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHhHhhhcCCCCccccccchhh
Q 037028 363 SPKVVMLVEQDSSHNGPFFLGRFMEALHYYSAIFDSLDAMLPKYDTKRAKIEQFYFAEEIKNIVSCEGPARVERHERVDQ 442 (503)
Q Consensus 363 ~PkvvvlvE~ea~~ns~~F~~RF~eAL~yYsAlFDSLda~lp~~~~eR~~iE~~~lg~eI~NiVAcEG~~RvERhE~~~~ 442 (503)
+|+|||++|+|+|||+|+|++||.|||+||+|+|||||+++|+++++|..+|+.+||++|+|||||||.+|+||||++++
T Consensus 235 ~P~vvv~~E~ea~~n~~~F~~RF~eal~yYsalfdsle~~~~~~~~~r~~~E~~~~~~eI~niVa~eg~~R~eR~e~~~~ 314 (374)
T PF03514_consen 235 NPKVVVLVEQEADHNSPSFLERFREALHYYSALFDSLEACLPRDSEERLAVERLFFGREIMNIVACEGEERVERHERLEQ 314 (374)
T ss_pred CCCEEEEEeecCCCCCCchHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhhHHHHhhhcccccccccccchhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCceeecCC--hHHHHHHHHHhcCCCCCcEEEeeCCEEEEEeCCceEEEEEeee
Q 037028 443 WRRRMSRAGFQSVPIK--MLMQAKQWLRKVQTCEGYTIIEEKGCLVLGWKSKPIIAASCWK 501 (503)
Q Consensus 443 Wr~rm~~aGF~~~~ls--~~~qA~~lL~~~~~~~gy~v~~~~g~L~LgWk~~pL~svSaWr 501 (503)
|+.||.+|||+++|+| .+.||+.+|+++. ++||+|++++|||+||||++||+++||||
T Consensus 315 W~~r~~~aGF~~~~ls~~~~~qa~~ll~~~~-~~g~~v~~~~~~l~L~Wk~~pL~~~SaWr 374 (374)
T PF03514_consen 315 WRRRMRRAGFRPVPLSEFAVSQAKLLLRKFP-GDGYTVEEDGGCLLLGWKGRPLVAASAWR 374 (374)
T ss_pred HHHHHHhcCCeecCCCHHHHHHHHHHHhccC-CCCeEEEEcCCEEEEEeCCcEEEEEeCcC
Confidence 9999999999999999 4789999998876 89999999999999999999999999997
No 2
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=97.10 E-value=0.041 Score=54.72 Aligned_cols=193 Identities=18% Similarity=0.238 Sum_probs=102.9
Q ss_pred HHhccchhhhhHhhhHHHHhhhcCCceeEEeeeccccCCCCccchhhhHHHHhcCCCCCCCcEEEeeecCCchhHHHHHH
Q 037028 216 YEICPQIQFGHFVANASILEAFEGESLVHVVDLGMTLGLPHGRQWHSLMQSLVNRSGKVPKRLKITGVGNCSERLGEIGD 295 (503)
Q Consensus 216 ~e~~P~~kfahftANqAILEA~~g~~~VHIVDfgi~~G~~~G~QWpsLiqaLA~R~ggpP~~LRITgI~~~~~~l~~tg~ 295 (503)
....|.....|-.++..+ ...-. ..-+|+|+|.|. |. +...|+.+-. .| ..++|||+.+...++.+.+
T Consensus 33 ~~~~p~y~~~~~~~~~~~-~~~~~-~~~~vLDlGcGt----G~----~~~~l~~~~~-~~-~~~v~gvD~S~~ml~~A~~ 100 (247)
T PRK15451 33 QRSVPGYSNIISMIGMLA-ERFVQ-PGTQVYDLGCSL----GA----ATLSVRRNIH-HD-NCKIIAIDNSPAMIERCRR 100 (247)
T ss_pred HhcCCChHHHHHHHHHHH-HHhCC-CCCEEEEEcccC----CH----HHHHHHHhcC-CC-CCeEEEEeCCHHHHHHHHH
Confidence 456788887777766543 33222 234799999753 33 3333444221 23 4899999999888888777
Q ss_pred HHHHHHhhCCCcEEEeeecccccccCcccccccCCcEEEEEeccccccccccccchHHHHHHHH-HhcCCc-EEEEEeec
Q 037028 296 ELKRYADGLKLNFEFLAVEKSLETLQAKDINVEDGEVLVMNSILELHCVVKESRGALNSVLQRL-HQLSPK-VVMLVEQD 373 (503)
Q Consensus 296 rL~~fA~~lgipFeF~~v~~~le~l~~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~I-r~L~Pk-vvvlvE~e 373 (503)
++.++.. .-.++| +..+++++.. .+.++++ +.+.||++..+ ....+|+.| +.|+|. +++++|.=
T Consensus 101 ~~~~~~~--~~~v~~--~~~d~~~~~~-----~~~D~vv--~~~~l~~l~~~---~~~~~l~~i~~~LkpGG~l~l~e~~ 166 (247)
T PRK15451 101 HIDAYKA--PTPVDV--IEGDIRDIAI-----ENASMVV--LNFTLQFLEPS---ERQALLDKIYQGLNPGGALVLSEKF 166 (247)
T ss_pred HHHhcCC--CCCeEE--EeCChhhCCC-----CCCCEEe--hhhHHHhCCHH---HHHHHHHHHHHhcCCCCEEEEEEec
Confidence 7654321 113444 3334443322 2234444 44667887542 234566655 678996 56666743
Q ss_pred CCCCCCchHHHHHHHHHHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHhHhhhcCCCCccccccchhhHHHHHhcCCce
Q 037028 374 SSHNGPFFLGRFMEALHYYSAIFDSLDAMLPKYDTKRAKIEQFYFAEEIKNIVSCEGPARVERHERVDQWRRRMSRAGFQ 453 (503)
Q Consensus 374 a~~ns~~F~~RF~eAL~yYsAlFDSLda~lp~~~~eR~~iE~~~lg~eI~NiVAcEG~~RvERhE~~~~Wr~rm~~aGF~ 453 (503)
... .+...+.+.+..+.|. .... .++ ..+++. ....+|+ -++++.++..++++.|||.
T Consensus 167 ~~~-~~~~~~~~~~~~~~~~-----~~~g---~s~--~ei~~~--~~~~~~~---------~~~~~~~~~~~~L~~aGF~ 224 (247)
T PRK15451 167 SFE-DAKVGELLFNMHHDFK-----RANG---YSE--LEISQK--RSMLENV---------MLTDSVETHKARLHKAGFE 224 (247)
T ss_pred CCC-cchhHHHHHHHHHHHH-----HHcC---CCH--HHHHHH--HHHHHhh---------cccCCHHHHHHHHHHcCch
Confidence 332 2233344443333221 1111 111 112221 1223333 3456788999999999997
Q ss_pred eec
Q 037028 454 SVP 456 (503)
Q Consensus 454 ~~~ 456 (503)
.+.
T Consensus 225 ~v~ 227 (247)
T PRK15451 225 HSE 227 (247)
T ss_pred hHH
Confidence 643
No 3
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=96.27 E-value=0.19 Score=49.32 Aligned_cols=106 Identities=19% Similarity=0.333 Sum_probs=60.7
Q ss_pred ceeEEeeeccccCCCCccchhhhHHHHhcCCCCCCCcEEEeeecCCchhHHHHHHHHHHHHhhCCCcEEEeeeccccccc
Q 037028 241 SLVHVVDLGMTLGLPHGRQWHSLMQSLVNRSGKVPKRLKITGVGNCSERLGEIGDELKRYADGLKLNFEFLAVEKSLETL 320 (503)
Q Consensus 241 ~~VHIVDfgi~~G~~~G~QWpsLiqaLA~R~ggpP~~LRITgI~~~~~~l~~tg~rL~~fA~~lgipFeF~~v~~~le~l 320 (503)
..-+|+|+|.|- | .++..|+.+-.. | ..++|||+.+...++.+.+++.++.. +.+++|. ..++.++
T Consensus 53 ~~~~iLDlGcG~----G----~~~~~l~~~~~~-p-~~~v~gvD~s~~ml~~a~~~~~~~~~--~~~v~~~--~~d~~~~ 118 (239)
T TIGR00740 53 PDSNVYDLGCSR----G----AATLSARRNINQ-P-NVKIIGIDNSQPMVERCRQHIAAYHS--EIPVEIL--CNDIRHV 118 (239)
T ss_pred CCCEEEEecCCC----C----HHHHHHHHhcCC-C-CCeEEEEeCCHHHHHHHHHHHHhcCC--CCCeEEE--ECChhhC
Confidence 344799999753 3 245555554322 3 48999999988778777777754322 2234443 3344443
Q ss_pred CcccccccCCcEEEEEeccccccccccccchHHHHHHHH-HhcCCcEEEEE
Q 037028 321 QAKDINVEDGEVLVMNSILELHCVVKESRGALNSVLQRL-HQLSPKVVMLV 370 (503)
Q Consensus 321 ~~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~I-r~L~Pkvvvlv 370 (503)
.. .+..+ |-+.+.||++.++ ....+|+.+ +.|+|.-.+++
T Consensus 119 ~~-----~~~d~--v~~~~~l~~~~~~---~~~~~l~~i~~~LkpgG~l~i 159 (239)
T TIGR00740 119 EI-----KNASM--VILNFTLQFLPPE---DRIALLTKIYEGLNPNGVLVL 159 (239)
T ss_pred CC-----CCCCE--EeeecchhhCCHH---HHHHHHHHHHHhcCCCeEEEE
Confidence 32 22233 3355567887542 234566655 67899755444
No 4
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=95.32 E-value=2.2 Score=41.34 Aligned_cols=179 Identities=15% Similarity=0.200 Sum_probs=87.7
Q ss_pred HHHHhhhcCCceeEEeeeccccCCCCccchhhhHHHHhcCCCCCCCcEEEeeecCCchhHHHHHHHHHHHHhhCCCc-EE
Q 037028 231 ASILEAFEGESLVHVVDLGMTLGLPHGRQWHSLMQSLVNRSGKVPKRLKITGVGNCSERLGEIGDELKRYADGLKLN-FE 309 (503)
Q Consensus 231 qAILEA~~g~~~VHIVDfgi~~G~~~G~QWpsLiqaLA~R~ggpP~~LRITgI~~~~~~l~~tg~rL~~fA~~lgip-Fe 309 (503)
+.++..+.-...-+|+|+|.+. |. +...|+.+- +| ..++|||+.+...++.+.+++.+ .+++ .+
T Consensus 35 ~~~l~~l~~~~~~~vLDiGcG~----G~----~~~~la~~~--~~-~~~v~gvD~s~~~~~~a~~~~~~----~~~~~v~ 99 (231)
T TIGR02752 35 KDTMKRMNVQAGTSALDVCCGT----AD----WSIALAEAV--GP-EGHVIGLDFSENMLSVGRQKVKD----AGLHNVE 99 (231)
T ss_pred HHHHHhcCCCCCCEEEEeCCCc----CH----HHHHHHHHh--CC-CCEEEEEECCHHHHHHHHHHHHh----cCCCceE
Confidence 4566666544455899999643 32 334555442 23 47999999887777666666532 3332 33
Q ss_pred EeeecccccccCcccccccCCcEEEEEeccccccccccccchHHHHHH-HHHhcCCcEEEEEeecCCCCCCchHHHHHHH
Q 037028 310 FLAVEKSLETLQAKDINVEDGEVLVMNSILELHCVVKESRGALNSVLQ-RLHQLSPKVVMLVEQDSSHNGPFFLGRFMEA 388 (503)
Q Consensus 310 F~~v~~~le~l~~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~-~Ir~L~PkvvvlvE~ea~~ns~~F~~RF~eA 388 (503)
| +..+.+++.. ....=+.|+.+ +.+|++.+ ...+|+ ..+.|+|.-.+++-.....+.+. +...
T Consensus 100 ~--~~~d~~~~~~---~~~~fD~V~~~--~~l~~~~~-----~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~----~~~~ 163 (231)
T TIGR02752 100 L--VHGNAMELPF---DDNSFDYVTIG--FGLRNVPD-----YMQVLREMYRVVKPGGKVVCLETSQPTIPG----FKQL 163 (231)
T ss_pred E--EEechhcCCC---CCCCccEEEEe--cccccCCC-----HHHHHHHHHHHcCcCeEEEEEECCCCCChH----HHHH
Confidence 3 2223333221 11111344443 45677643 234555 45778998555443222223222 3333
Q ss_pred HHHHHHH-HhhhhccCCCCCHHHHHHHHHHHHHHHhHhhhcCCCCccccccchhhHHHHHhcCCceeecC
Q 037028 389 LHYYSAI-FDSLDAMLPKYDTKRAKIEQFYFAEEIKNIVSCEGPARVERHERVDQWRRRMSRAGFQSVPI 457 (503)
Q Consensus 389 L~yYsAl-FDSLda~lp~~~~eR~~iE~~~lg~eI~NiVAcEG~~RvERhE~~~~Wr~rm~~aGF~~~~l 457 (503)
+.+|... ..-+...+..... +...+.+.+.+ --..++++..|+.+||+.+.+
T Consensus 164 ~~~~~~~~~p~~~~~~~~~~~-----~~~~~~~~~~~------------~~~~~~l~~~l~~aGf~~~~~ 216 (231)
T TIGR02752 164 YFFYFKYIMPLFGKLFAKSYK-----EYSWLQESTRD------------FPGMDELAEMFQEAGFKDVEV 216 (231)
T ss_pred HHHHHcChhHHhhHHhcCCHH-----HHHHHHHHHHH------------cCCHHHHHHHHHHcCCCeeEE
Confidence 3333211 1111111111111 11122223322 235678999999999988765
No 5
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=93.78 E-value=1.3 Score=44.20 Aligned_cols=180 Identities=20% Similarity=0.302 Sum_probs=67.2
Q ss_pred HHHhhhcCCceeEEeeeccccCCCCccchhhhHHHHhcCCCCCCCcEEEeeecCCchhHHHHHHHHHHHHhhCCCcEEEe
Q 037028 232 SILEAFEGESLVHVVDLGMTLGLPHGRQWHSLMQSLVNRSGKVPKRLKITGVGNCSERLGEIGDELKRYADGLKLNFEFL 311 (503)
Q Consensus 232 AILEA~~g~~~VHIVDfgi~~G~~~G~QWpsLiqaLA~R~ggpP~~LRITgI~~~~~~l~~tg~rL~~fA~~lgipFeF~ 311 (503)
.+++.+......+|+|++.| .|. +...|+.+.+ | .-+||||+.+.+-|+...+++.+.... +.+|.
T Consensus 38 ~~~~~~~~~~g~~vLDv~~G----tG~----~~~~l~~~~~--~-~~~v~~vD~s~~ML~~a~~k~~~~~~~---~i~~v 103 (233)
T PF01209_consen 38 KLIKLLGLRPGDRVLDVACG----TGD----VTRELARRVG--P-NGKVVGVDISPGMLEVARKKLKREGLQ---NIEFV 103 (233)
T ss_dssp HHHHHHT--S--EEEEET-T----TSH----HHHHHGGGSS------EEEEEES-HHHHHHHHHHHHHTT-----SEEEE
T ss_pred HHHhccCCCCCCEEEEeCCC----hHH----HHHHHHHHCC--C-ccEEEEecCCHHHHHHHHHHHHhhCCC---CeeEE
Confidence 44555566666799999975 343 3334454432 2 469999999988898888888765433 33442
Q ss_pred eecccccccCcccccccCCcEEEEEeccccccccccccchHHHHHHHHHhcCCcE-EEEEeecCCCCCCchHHHHHHHHH
Q 037028 312 AVEKSLETLQAKDINVEDGEVLVMNSILELHCVVKESRGALNSVLQRLHQLSPKV-VMLVEQDSSHNGPFFLGRFMEALH 390 (503)
Q Consensus 312 ~v~~~le~l~~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~Ir~L~Pkv-vvlvE~ea~~ns~~F~~RF~eAL~ 390 (503)
..+.++ +...++..=+|-|.|.||++.+. ...+=...|-|+|.- ++++|-.--.| .++.. ...
T Consensus 104 --~~da~~-----lp~~d~sfD~v~~~fglrn~~d~----~~~l~E~~RVLkPGG~l~ile~~~p~~--~~~~~---~~~ 167 (233)
T PF01209_consen 104 --QGDAED-----LPFPDNSFDAVTCSFGLRNFPDR----ERALREMYRVLKPGGRLVILEFSKPRN--PLLRA---LYK 167 (233)
T ss_dssp --E-BTTB-------S-TT-EEEEEEES-GGG-SSH----HHHHHHHHHHEEEEEEEEEEEEEB-SS--HHHHH---HHH
T ss_pred --EcCHHH-----hcCCCCceeEEEHHhhHHhhCCH----HHHHHHHHHHcCCCeEEEEeeccCCCC--chhhc---eee
Confidence 233333 34455667788899999998752 224445557789964 45556433222 23332 333
Q ss_pred HHHHHH-hhhhccCCCCCHHHHHHHHHHHHHHHhHhhhcCCCCccccccchhhHHHHHhcCCceeecCC
Q 037028 391 YYSAIF-DSLDAMLPKYDTKRAKIEQFYFAEEIKNIVSCEGPARVERHERVDQWRRRMSRAGFQSVPIK 458 (503)
Q Consensus 391 yYsAlF-DSLda~lp~~~~eR~~iE~~~lg~eI~NiVAcEG~~RvERhE~~~~Wr~rm~~aGF~~~~ls 458 (503)
+|...+ =-+...+..+ +. +-.+|.+-|.+... .++-.+.|+++||+.+...
T Consensus 168 ~y~~~ilP~~g~l~~~~---~~--~Y~yL~~Si~~f~~------------~~~~~~~l~~~Gf~~v~~~ 219 (233)
T PF01209_consen 168 FYFKYILPLIGRLLSGD---RE--AYRYLPESIRRFPS------------PEELKELLEEAGFKNVEYR 219 (233)
T ss_dssp H--------------------------------------------------------------------
T ss_pred eeecccccccccccccc---cc--cccccccccccccc------------ccccccccccccccccccc
Confidence 444322 1222222221 11 12356666665432 2344567889999876653
No 6
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=93.34 E-value=1.5 Score=44.84 Aligned_cols=118 Identities=8% Similarity=0.119 Sum_probs=64.7
Q ss_pred hHHHHhhhcCCceeEEeeeccccCCCCccchhhhHHHHhcCCCCCCCcEEEeeecCCchhHHHHHHHHHHHHhhCCCcEE
Q 037028 230 NASILEAFEGESLVHVVDLGMTLGLPHGRQWHSLMQSLVNRSGKVPKRLKITGVGNCSERLGEIGDELKRYADGLKLNFE 309 (503)
Q Consensus 230 NqAILEA~~g~~~VHIVDfgi~~G~~~G~QWpsLiqaLA~R~ggpP~~LRITgI~~~~~~l~~tg~rL~~fA~~lgipFe 309 (503)
.+.|++.+.-.+.-+|+|+|-+ .| .+...++.+. | .+++|+++.+ ..++.+.+ .++..|+.=.
T Consensus 138 ~~~l~~~~~~~~~~~vlDiG~G----~G----~~~~~~~~~~---p-~~~~~~~D~~-~~~~~a~~----~~~~~gl~~r 200 (306)
T TIGR02716 138 IQLLLEEAKLDGVKKMIDVGGG----IG----DISAAMLKHF---P-ELDSTILNLP-GAIDLVNE----NAAEKGVADR 200 (306)
T ss_pred HHHHHHHcCCCCCCEEEEeCCc----hh----HHHHHHHHHC---C-CCEEEEEecH-HHHHHHHH----HHHhCCccce
Confidence 5677887766666799999954 33 3445555552 3 5899999863 34444443 3455555422
Q ss_pred EeeecccccccCcccccccCCcEEEEEeccccccccccccchHHHHHHHH-HhcCCc-EEEEEeecC
Q 037028 310 FLAVEKSLETLQAKDINVEDGEVLVMNSILELHCVVKESRGALNSVLQRL-HQLSPK-VVMLVEQDS 374 (503)
Q Consensus 310 F~~v~~~le~l~~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~I-r~L~Pk-vvvlvE~ea 374 (503)
++.+..+..+.. + ...+++++. ..||+..++ ....+|+.+ +.|+|. .++++|.-.
T Consensus 201 v~~~~~d~~~~~---~--~~~D~v~~~--~~lh~~~~~---~~~~il~~~~~~L~pgG~l~i~d~~~ 257 (306)
T TIGR02716 201 MRGIAVDIYKES---Y--PEADAVLFC--RILYSANEQ---LSTIMCKKAFDAMRSGGRLLILDMVI 257 (306)
T ss_pred EEEEecCccCCC---C--CCCCEEEeE--hhhhcCChH---HHHHHHHHHHHhcCCCCEEEEEEecc
Confidence 233333322111 1 223444332 345665432 234567655 689995 566667643
No 7
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=92.98 E-value=0.66 Score=39.31 Aligned_cols=105 Identities=19% Similarity=0.279 Sum_probs=59.5
Q ss_pred EEeeeccccCCCCccchhhhHHHHhcCCCCCCCcEEEeeecCCchhHHHHHHHHHHHHhhCCCcEEEeeecccccccCcc
Q 037028 244 HVVDLGMTLGLPHGRQWHSLMQSLVNRSGKVPKRLKITGVGNCSERLGEIGDELKRYADGLKLNFEFLAVEKSLETLQAK 323 (503)
Q Consensus 244 HIVDfgi~~G~~~G~QWpsLiqaLA~R~ggpP~~LRITgI~~~~~~l~~tg~rL~~fA~~lgipFeF~~v~~~le~l~~~ 323 (503)
+|+|+|-+.| .+...|+.+. | ..++|||+.+.+.++...++..+.... -..+|.. .++ ...
T Consensus 4 ~vLDlGcG~G--------~~~~~l~~~~---~-~~~v~gvD~s~~~~~~a~~~~~~~~~~--~~i~~~~--~d~-~~~-- 64 (112)
T PF12847_consen 4 RVLDLGCGTG--------RLSIALARLF---P-GARVVGVDISPEMLEIARERAAEEGLS--DRITFVQ--GDA-EFD-- 64 (112)
T ss_dssp EEEEETTTTS--------HHHHHHHHHH---T-TSEEEEEESSHHHHHHHHHHHHHTTTT--TTEEEEE--SCC-HGG--
T ss_pred EEEEEcCcCC--------HHHHHHHhcC---C-CCEEEEEeCCHHHHHHHHHHHHhcCCC--CCeEEEE--Ccc-ccC--
Confidence 6899997543 3334444421 2 478999999988888888877443333 3444432 222 111
Q ss_pred ccccc-CCcEEEEEeccccccccccccchHHHHHHHH-HhcCCcEEEEEe
Q 037028 324 DINVE-DGEVLVMNSILELHCVVKESRGALNSVLQRL-HQLSPKVVMLVE 371 (503)
Q Consensus 324 ~l~~~-~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~I-r~L~PkvvvlvE 371 (503)
.... +=++++.+. +.+|++... .....+|+.+ +.|+|.-+++++
T Consensus 65 -~~~~~~~D~v~~~~-~~~~~~~~~--~~~~~~l~~~~~~L~pgG~lvi~ 110 (112)
T PF12847_consen 65 -PDFLEPFDLVICSG-FTLHFLLPL--DERRRVLERIRRLLKPGGRLVIN 110 (112)
T ss_dssp -TTTSSCEEEEEECS-GSGGGCCHH--HHHHHHHHHHHHHEEEEEEEEEE
T ss_pred -cccCCCCCEEEECC-Cccccccch--hHHHHHHHHHHHhcCCCcEEEEE
Confidence 1111 123455544 456666543 2345677766 578998766654
No 8
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=92.08 E-value=14 Score=37.05 Aligned_cols=132 Identities=19% Similarity=0.152 Sum_probs=71.6
Q ss_pred hhHHHHhhhcCCceeEEeeeccccCCCCccchhhhHHHHhcCCCCCCCcEEEeeecCCchhHHHHHHHHHHHHhhCCCcE
Q 037028 229 ANASILEAFEGESLVHVVDLGMTLGLPHGRQWHSLMQSLVNRSGKVPKRLKITGVGNCSERLGEIGDELKRYADGLKLNF 308 (503)
Q Consensus 229 ANqAILEA~~g~~~VHIVDfgi~~G~~~G~QWpsLiqaLA~R~ggpP~~LRITgI~~~~~~l~~tg~rL~~fA~~lgipF 308 (503)
....+++.+.-...-+|+|+|.| .|. +...|+.+-+ | .-+||||+.+.+.++.+.++....++...-..
T Consensus 61 ~r~~~~~~~~~~~~~~VLDlGcG----tG~----~~~~la~~~~--~-~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i 129 (261)
T PLN02233 61 WKRMAVSWSGAKMGDRVLDLCCG----SGD----LAFLLSEKVG--S-DGKVMGLDFSSEQLAVAASRQELKAKSCYKNI 129 (261)
T ss_pred HHHHHHHHhCCCCCCEEEEECCc----CCH----HHHHHHHHhC--C-CCEEEEEECCHHHHHHHHHHhhhhhhccCCCe
Confidence 34444444443445689999975 343 3345665432 2 36999999998888777766543233322234
Q ss_pred EEeeecccccccCcccccccCCcEEEEEeccccccccccccchHHHHHH-HHHhcCCc-EEEEEeecCCCCCCchHHHH
Q 037028 309 EFLAVEKSLETLQAKDINVEDGEVLVMNSILELHCVVKESRGALNSVLQ-RLHQLSPK-VVMLVEQDSSHNGPFFLGRF 385 (503)
Q Consensus 309 eF~~v~~~le~l~~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~-~Ir~L~Pk-vvvlvE~ea~~ns~~F~~RF 385 (503)
+|.. .+.+++. ..++..=+|-+.+.||++.+ ...+|+ ..|-|+|. .++++|-.. ....|...+
T Consensus 130 ~~~~--~d~~~lp-----~~~~sfD~V~~~~~l~~~~d-----~~~~l~ei~rvLkpGG~l~i~d~~~--~~~~~~~~~ 194 (261)
T PLN02233 130 EWIE--GDATDLP-----FDDCYFDAITMGYGLRNVVD-----RLKAMQEMYRVLKPGSRVSILDFNK--STQPFTTSM 194 (261)
T ss_pred EEEE--cccccCC-----CCCCCEeEEEEecccccCCC-----HHHHHHHHHHHcCcCcEEEEEECCC--CCcHHHHHH
Confidence 4432 2333332 23333334456677888753 234444 44778997 445555442 223455544
No 9
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=91.20 E-value=18 Score=36.43 Aligned_cols=190 Identities=21% Similarity=0.335 Sum_probs=113.5
Q ss_pred hccchhhh-hHhhhHHHHhhhcCCceeEEeeeccccCCCCccchhhhHHHHhcCCCCCCCcEEEeeecCCchhHHHHHHH
Q 037028 218 ICPQIQFG-HFVANASILEAFEGESLVHVVDLGMTLGLPHGRQWHSLMQSLVNRSGKVPKRLKITGVGNCSERLGEIGDE 296 (503)
Q Consensus 218 ~~P~~kfa-hftANqAILEA~~g~~~VHIVDfgi~~G~~~G~QWpsLiqaLA~R~ggpP~~LRITgI~~~~~~l~~tg~r 296 (503)
..+++.|+ |.+=+++..+.+.-.+--+|+|.+.|- | .|.-++. +.-| .-+|||++.+...|+...++
T Consensus 27 ~n~~~S~g~~~~Wr~~~i~~~~~~~g~~vLDva~GT----G-d~a~~~~---k~~g----~g~v~~~D~s~~ML~~a~~k 94 (238)
T COG2226 27 MNDLMSFGLHRLWRRALISLLGIKPGDKVLDVACGT----G-DMALLLA---KSVG----TGEVVGLDISESMLEVAREK 94 (238)
T ss_pred hcccccCcchHHHHHHHHHhhCCCCCCEEEEecCCc----c-HHHHHHH---HhcC----CceEEEEECCHHHHHHHHHH
Confidence 34666776 567777777776555789999999753 3 4444444 3333 48999999998888888887
Q ss_pred HHHHHhhCCCc-EEEeeecccccccCcccccccCCcEEEEEeccccccccccccchHHHHHHHH-HhcCCcEEEEEeecC
Q 037028 297 LKRYADGLKLN-FEFLAVEKSLETLQAKDINVEDGEVLVMNSILELHCVVKESRGALNSVLQRL-HQLSPKVVMLVEQDS 374 (503)
Q Consensus 297 L~~fA~~lgip-FeF~~v~~~le~l~~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~I-r~L~PkvvvlvE~ea 374 (503)
+.+ .|+. ++| |..+-|+|. ..++-.=+|.+.|.||++.+ .+.+|+-+ |=|+|...+++-.=.
T Consensus 95 ~~~----~~~~~i~f--v~~dAe~LP-----f~D~sFD~vt~~fglrnv~d-----~~~aL~E~~RVlKpgG~~~vle~~ 158 (238)
T COG2226 95 LKK----KGVQNVEF--VVGDAENLP-----FPDNSFDAVTISFGLRNVTD-----IDKALKEMYRVLKPGGRLLVLEFS 158 (238)
T ss_pred hhc----cCccceEE--EEechhhCC-----CCCCccCEEEeeehhhcCCC-----HHHHHHHHHHhhcCCeEEEEEEcC
Confidence 643 3332 444 444444443 34555557788899999875 24555544 668998766654434
Q ss_pred CCCCCchHHHHHHHHH-HHHH-HHhhhhccCCCCCHHHHHHHHHHHHHHHhHhhhcCCCCccccccchhhHHHHHhcCCc
Q 037028 375 SHNGPFFLGRFMEALH-YYSA-IFDSLDAMLPKYDTKRAKIEQFYFAEEIKNIVSCEGPARVERHERVDQWRRRMSRAGF 452 (503)
Q Consensus 375 ~~ns~~F~~RF~eAL~-yYsA-lFDSLda~lp~~~~eR~~iE~~~lg~eI~NiVAcEG~~RvERhE~~~~Wr~rm~~aGF 452 (503)
....+.| ..+++ ||.. ++=.+......+..+.. ++.+-|+.. -..+.-.+.|..+||
T Consensus 159 ~p~~~~~----~~~~~~~~~~~v~P~~g~~~~~~~~~y~-----yL~eSi~~~------------p~~~~l~~~~~~~gf 217 (238)
T COG2226 159 KPDNPVL----RKAYILYYFKYVLPLIGKLVAKDAEAYE-----YLAESIRRF------------PDQEELKQMIEKAGF 217 (238)
T ss_pred CCCchhh----HHHHHHHHHHhHhhhhceeeecChHHHH-----HHHHHHHhC------------CCHHHHHHHHHhcCc
Confidence 3344333 33333 4444 55555544433333333 344444443 344455667788999
Q ss_pred eeec
Q 037028 453 QSVP 456 (503)
Q Consensus 453 ~~~~ 456 (503)
..+.
T Consensus 218 ~~i~ 221 (238)
T COG2226 218 EEVR 221 (238)
T ss_pred eEEe
Confidence 8754
No 10
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=90.38 E-value=3.2 Score=37.00 Aligned_cols=98 Identities=18% Similarity=0.309 Sum_probs=54.3
Q ss_pred CCceeEEeeeccccCCCCccchhhhHHHHhcCCCCCCCcEEEeeecCCchhHHHHHHHHHHHHhhCCCcEEEeeeccccc
Q 037028 239 GESLVHVVDLGMTLGLPHGRQWHSLMQSLVNRSGKVPKRLKITGVGNCSERLGEIGDELKRYADGLKLNFEFLAVEKSLE 318 (503)
Q Consensus 239 g~~~VHIVDfgi~~G~~~G~QWpsLiqaLA~R~ggpP~~LRITgI~~~~~~l~~tg~rL~~fA~~lgipFeF~~v~~~le 318 (503)
..+.-.|+|+|-+. | . +.+.|+.+ + .++||++.....++. ..+.+.-.-..
T Consensus 20 ~~~~~~vLDiGcG~----G-~---~~~~l~~~----~--~~~~g~D~~~~~~~~-----------~~~~~~~~~~~---- 70 (161)
T PF13489_consen 20 LKPGKRVLDIGCGT----G-S---FLRALAKR----G--FEVTGVDISPQMIEK-----------RNVVFDNFDAQ---- 70 (161)
T ss_dssp TTTTSEEEEESSTT----S-H---HHHHHHHT----T--SEEEEEESSHHHHHH-----------TTSEEEEEECH----
T ss_pred cCCCCEEEEEcCCC----C-H---HHHHHHHh----C--CEEEEEECCHHHHhh-----------hhhhhhhhhhh----
Confidence 35666999999753 3 3 45555554 1 299999987655544 22222211110
Q ss_pred ccCcccccccCCcEEEEEeccccccccccccchHHHHHHHH-HhcCCc-EEEEEeecCC
Q 037028 319 TLQAKDINVEDGEVLVMNSILELHCVVKESRGALNSVLQRL-HQLSPK-VVMLVEQDSS 375 (503)
Q Consensus 319 ~l~~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~I-r~L~Pk-vvvlvE~ea~ 375 (503)
.....++-.=+|-|...|||+.+ ...+|+.| +.|+|. ++++++....
T Consensus 71 -----~~~~~~~~fD~i~~~~~l~~~~d-----~~~~l~~l~~~LkpgG~l~~~~~~~~ 119 (161)
T PF13489_consen 71 -----DPPFPDGSFDLIICNDVLEHLPD-----PEEFLKELSRLLKPGGYLVISDPNRD 119 (161)
T ss_dssp -----THHCHSSSEEEEEEESSGGGSSH-----HHHHHHHHHHCEEEEEEEEEEEEBTT
T ss_pred -----hhhccccchhhHhhHHHHhhccc-----HHHHHHHHHHhcCCCCEEEEEEcCCc
Confidence 11112334444555577899874 34666666 457885 5555565543
No 11
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=89.98 E-value=2.7 Score=38.09 Aligned_cols=108 Identities=25% Similarity=0.386 Sum_probs=59.9
Q ss_pred CceeEEeeeccccCCCCccchhhhHHHHhcCCCCCCCcEEEeeecCCchhHHHHHHHHHHHHhhCCCc-EEEeeeccccc
Q 037028 240 ESLVHVVDLGMTLGLPHGRQWHSLMQSLVNRSGKVPKRLKITGVGNCSERLGEIGDELKRYADGLKLN-FEFLAVEKSLE 318 (503)
Q Consensus 240 ~~~VHIVDfgi~~G~~~G~QWpsLiqaLA~R~ggpP~~LRITgI~~~~~~l~~tg~rL~~fA~~lgip-FeF~~v~~~le 318 (503)
.+..+|+|+|.|.| .+...|+.+- +| ..++|||+.+...++...+ .++..+++ .+|.. .+++
T Consensus 2 ~~~~~iLDlGcG~G--------~~~~~l~~~~-~~--~~~i~gvD~s~~~i~~a~~----~~~~~~~~ni~~~~--~d~~ 64 (152)
T PF13847_consen 2 KSNKKILDLGCGTG--------RLLIQLAKEL-NP--GAKIIGVDISEEMIEYAKK----RAKELGLDNIEFIQ--GDIE 64 (152)
T ss_dssp TTTSEEEEET-TTS--------HHHHHHHHHS-TT--TSEEEEEESSHHHHHHHHH----HHHHTTSTTEEEEE--SBTT
T ss_pred CCCCEEEEecCcCc--------HHHHHHHHhc-CC--CCEEEEEECcHHHHHHhhc----ccccccccccceEE--eehh
Confidence 35678999997543 2334455322 12 3679999988766655544 56777876 66654 3455
Q ss_pred ccCcccccccCCcEEEEEeccccccccccccchHHHHHH-HHHhcCCcEEEEE-eec
Q 037028 319 TLQAKDINVEDGEVLVMNSILELHCVVKESRGALNSVLQ-RLHQLSPKVVMLV-EQD 373 (503)
Q Consensus 319 ~l~~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~-~Ir~L~Pkvvvlv-E~e 373 (503)
++... +. ..=+.++.+ ..+|++.+ ...+|+ ..+.|+|..++++ +..
T Consensus 65 ~l~~~-~~-~~~D~I~~~--~~l~~~~~-----~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 65 DLPQE-LE-EKFDIIISN--GVLHHFPD-----PEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp CGCGC-SS-TTEEEEEEE--STGGGTSH-----HHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred ccccc-cC-CCeeEEEEc--CchhhccC-----HHHHHHHHHHHcCCCcEEEEEECC
Confidence 54432 32 122334444 44476653 234444 4577898755444 444
No 12
>PRK06202 hypothetical protein; Provisional
Probab=89.62 E-value=8.1 Score=37.70 Aligned_cols=109 Identities=15% Similarity=0.155 Sum_probs=57.3
Q ss_pred cCCceeEEeeeccccCCCCccchhhhHHHHhcCCCCCCCcEEEeeecCCchhHHHHHHHHHHHHhhCCCcEEEeeecccc
Q 037028 238 EGESLVHVVDLGMTLGLPHGRQWHSLMQSLVNRSGKVPKRLKITGVGNCSERLGEIGDELKRYADGLKLNFEFLAVEKSL 317 (503)
Q Consensus 238 ~g~~~VHIVDfgi~~G~~~G~QWpsLiqaLA~R~ggpP~~LRITgI~~~~~~l~~tg~rL~~fA~~lgipFeF~~v~~~l 317 (503)
...+...|+|+|-|. |. +...|..... ..|| ..+||||+.+.+.++...++. +..++.+.....
T Consensus 57 ~~~~~~~iLDlGcG~----G~-~~~~L~~~~~-~~g~--~~~v~gvD~s~~~l~~a~~~~----~~~~~~~~~~~~---- 120 (232)
T PRK06202 57 SADRPLTLLDIGCGG----GD-LAIDLARWAR-RDGL--RLEVTAIDPDPRAVAFARANP----RRPGVTFRQAVS---- 120 (232)
T ss_pred CCCCCcEEEEeccCC----CH-HHHHHHHHHH-hCCC--CcEEEEEcCCHHHHHHHHhcc----ccCCCeEEEEec----
Confidence 334567899999754 32 3333322222 2233 389999999877766554442 223454443211
Q ss_pred cccCcccccccCCcEEEEEeccccccccccccchHHHHHHHHHhcCCcEEEEE
Q 037028 318 ETLQAKDINVEDGEVLVMNSILELHCVVKESRGALNSVLQRLHQLSPKVVMLV 370 (503)
Q Consensus 318 e~l~~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~Ir~L~Pkvvvlv 370 (503)
+.+. ..++..=+|-|.+.|||+.++ .+..+|+.+.++.-..+++.
T Consensus 121 ~~l~-----~~~~~fD~V~~~~~lhh~~d~---~~~~~l~~~~r~~~~~~~i~ 165 (232)
T PRK06202 121 DELV-----AEGERFDVVTSNHFLHHLDDA---EVVRLLADSAALARRLVLHN 165 (232)
T ss_pred cccc-----ccCCCccEEEECCeeecCChH---HHHHHHHHHHHhcCeeEEEe
Confidence 1121 122333334445567998753 24567777765544555544
No 13
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=86.93 E-value=28 Score=32.88 Aligned_cols=118 Identities=24% Similarity=0.280 Sum_probs=62.3
Q ss_pred hhHHHHhhhcCCceeEEeeeccccCCCCccchhhhHHHHhcCCCCCCCcEEEeeecCCchhHHHHHHHHHHHHhhCCCcE
Q 037028 229 ANASILEAFEGESLVHVVDLGMTLGLPHGRQWHSLMQSLVNRSGKVPKRLKITGVGNCSERLGEIGDELKRYADGLKLNF 308 (503)
Q Consensus 229 ANqAILEA~~g~~~VHIVDfgi~~G~~~G~QWpsLiqaLA~R~ggpP~~LRITgI~~~~~~l~~tg~rL~~fA~~lgipF 308 (503)
.-+.+++.+.......|+|+|.+. |. +...++.+- |+ ..++++|+.....++.+.+++. .+-..
T Consensus 27 ~~~~~~~~~~~~~~~~vldiG~G~----G~----~~~~~~~~~--~~-~~~~~~iD~~~~~~~~~~~~~~-----~~~~i 90 (223)
T TIGR01934 27 WRRRAVKLIGVFKGQKVLDVACGT----GD----LAIELAKSA--PD-RGKVTGVDFSSEMLEVAKKKSE-----LPLNI 90 (223)
T ss_pred HHHHHHHHhccCCCCeEEEeCCCC----Ch----hHHHHHHhc--CC-CceEEEEECCHHHHHHHHHHhc-----cCCCc
Confidence 334556666555677999999753 32 333444432 33 4789999987766666665543 22233
Q ss_pred EEeeecccccccCcccccccCCcEEEEEeccccccccccccchHHHHHHHH-HhcCCcE-EEEEeecC
Q 037028 309 EFLAVEKSLETLQAKDINVEDGEVLVMNSILELHCVVKESRGALNSVLQRL-HQLSPKV-VMLVEQDS 374 (503)
Q Consensus 309 eF~~v~~~le~l~~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~I-r~L~Pkv-vvlvE~ea 374 (503)
+|.. .++.++. ..++..=+|-+.+.+|++.+ ...+|+.+ +.|+|.- +++++...
T Consensus 91 ~~~~--~d~~~~~-----~~~~~~D~i~~~~~~~~~~~-----~~~~l~~~~~~L~~gG~l~~~~~~~ 146 (223)
T TIGR01934 91 EFIQ--ADAEALP-----FEDNSFDAVTIAFGLRNVTD-----IQKALREMYRVLKPGGRLVILEFSK 146 (223)
T ss_pred eEEe--cchhcCC-----CCCCcEEEEEEeeeeCCccc-----HHHHHHHHHHHcCCCcEEEEEEecC
Confidence 4432 2222222 11222333344556677643 23455544 5678864 44555543
No 14
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=86.14 E-value=6.4 Score=37.66 Aligned_cols=111 Identities=15% Similarity=0.209 Sum_probs=62.7
Q ss_pred hhhHHHHhhhcCCceeEEeeeccccCCCCccchhhhHHHHhcCCCCCCCcEEEeeecCCchhHHHHHHHHHHHHhhCCCc
Q 037028 228 VANASILEAFEGESLVHVVDLGMTLGLPHGRQWHSLMQSLVNRSGKVPKRLKITGVGNCSERLGEIGDELKRYADGLKLN 307 (503)
Q Consensus 228 tANqAILEA~~g~~~VHIVDfgi~~G~~~G~QWpsLiqaLA~R~ggpP~~LRITgI~~~~~~l~~tg~rL~~fA~~lgip 307 (503)
++...|++++.-...-+|+|+|.|.| . +...|+.+ | .++|||+.+...++.+.+ .++.-|++
T Consensus 17 ~~~~~l~~~~~~~~~~~vLDiGcG~G----~----~a~~la~~-g-----~~V~~iD~s~~~l~~a~~----~~~~~~~~ 78 (195)
T TIGR00477 17 TTHSAVREAVKTVAPCKTLDLGCGQG----R----NSLYLSLA-G-----YDVRAWDHNPASIASVLD----MKARENLP 78 (195)
T ss_pred CchHHHHHHhccCCCCcEEEeCCCCC----H----HHHHHHHC-C-----CeEEEEECCHHHHHHHHH----HHHHhCCC
Confidence 56678888887666679999997533 2 23345544 2 479999987655554443 34455666
Q ss_pred EEEeeecccccccCcccccccCCcEEEEEeccccccccccccchHHHHHHHH-HhcCCcEE
Q 037028 308 FEFLAVEKSLETLQAKDINVEDGEVLVMNSILELHCVVKESRGALNSVLQRL-HQLSPKVV 367 (503)
Q Consensus 308 FeF~~v~~~le~l~~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~I-r~L~Pkvv 367 (503)
.++... ++.... +. ..=+.++.+. .+|++.. ..+..+++.+ +.|+|.-.
T Consensus 79 v~~~~~--d~~~~~---~~-~~fD~I~~~~--~~~~~~~---~~~~~~l~~~~~~LkpgG~ 128 (195)
T TIGR00477 79 LRTDAY--DINAAA---LN-EDYDFIFSTV--VFMFLQA---GRVPEIIANMQAHTRPGGY 128 (195)
T ss_pred ceeEec--cchhcc---cc-CCCCEEEEec--ccccCCH---HHHHHHHHHHHHHhCCCcE
Confidence 544432 222211 11 1124444433 3577643 2345666665 56899854
No 15
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=85.72 E-value=3.2 Score=34.93 Aligned_cols=94 Identities=24% Similarity=0.371 Sum_probs=50.4
Q ss_pred EeeeccccCCCCccchhhhHHHHhcCCCCCCCcEEEeeecCCchhHHHHHHHHHHHHhhCCCcEEEeeecccccccCccc
Q 037028 245 VVDLGMTLGLPHGRQWHSLMQSLVNRSGKVPKRLKITGVGNCSERLGEIGDELKRYADGLKLNFEFLAVEKSLETLQAKD 324 (503)
Q Consensus 245 IVDfgi~~G~~~G~QWpsLiqaLA~R~ggpP~~LRITgI~~~~~~l~~tg~rL~~fA~~lgipFeF~~v~~~le~l~~~~ 324 (503)
|+|+|.| .|..=..|.+.+ +.+| ..++|||+.+.+.++.+.++..+ .+++.+|. ..++.++.
T Consensus 1 ILDlgcG----~G~~~~~l~~~~---~~~~--~~~~~gvD~s~~~l~~~~~~~~~----~~~~~~~~--~~D~~~l~--- 62 (101)
T PF13649_consen 1 ILDLGCG----TGRVTRALARRF---DAGP--SSRVIGVDISPEMLELAKKRFSE----DGPKVRFV--QADARDLP--- 62 (101)
T ss_dssp -EEET-T----TSHHHHHHHHHS----------SEEEEEES-HHHHHHHHHHSHH----TTTTSEEE--ESCTTCHH---
T ss_pred CEEeecC----CcHHHHHHHHHh---hhcc--cceEEEEECCHHHHHHHHHhchh----cCCceEEE--ECCHhHCc---
Confidence 7899975 455444444444 2223 48999999988888776665544 55566663 33444432
Q ss_pred ccccCCcE-EEEEeccccccccccccchHHHHHHHHHh
Q 037028 325 INVEDGEV-LVMNSILELHCVVKESRGALNSVLQRLHQ 361 (503)
Q Consensus 325 l~~~~~Ea-LaVN~~~~Lh~l~~es~~~~~~~L~~Ir~ 361 (503)
...+.. +||++...+||+.+ ..+..+|+.+.+
T Consensus 63 --~~~~~~D~v~~~~~~~~~~~~---~~~~~ll~~~~~ 95 (101)
T PF13649_consen 63 --FSDGKFDLVVCSGLSLHHLSP---EELEALLRRIAR 95 (101)
T ss_dssp --HHSSSEEEEEE-TTGGGGSSH---HHHHHHHHHHHH
T ss_pred --ccCCCeeEEEEcCCccCCCCH---HHHHHHHHHHHH
Confidence 223333 44444455788654 245667776643
No 16
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=85.48 E-value=37 Score=36.87 Aligned_cols=114 Identities=13% Similarity=0.160 Sum_probs=64.2
Q ss_pred hhHHHHhhhcCCceeEEeeeccccCCCCccchhhhHHHHhcCCCCCCCcEEEeeecCCchhHHHHHHHHHHHHhhCCCcE
Q 037028 229 ANASILEAFEGESLVHVVDLGMTLGLPHGRQWHSLMQSLVNRSGKVPKRLKITGVGNCSERLGEIGDELKRYADGLKLNF 308 (503)
Q Consensus 229 ANqAILEA~~g~~~VHIVDfgi~~G~~~G~QWpsLiqaLA~R~ggpP~~LRITgI~~~~~~l~~tg~rL~~fA~~lgipF 308 (503)
....+++.+.-...-+|+|+|.|.| .+...|+.+.+ .++|||+.+...++.+.++. ...+...
T Consensus 254 ~te~l~~~~~~~~~~~vLDiGcG~G--------~~~~~la~~~~-----~~v~gvDiS~~~l~~A~~~~----~~~~~~v 316 (475)
T PLN02336 254 TTKEFVDKLDLKPGQKVLDVGCGIG--------GGDFYMAENFD-----VHVVGIDLSVNMISFALERA----IGRKCSV 316 (475)
T ss_pred HHHHHHHhcCCCCCCEEEEEeccCC--------HHHHHHHHhcC-----CEEEEEECCHHHHHHHHHHh----hcCCCce
Confidence 3455667665445568999997533 23445666542 48999998876666555442 2344455
Q ss_pred EEeeecccccccCcccccccCCcEEEEEeccccccccccccchHHHHHHHH-HhcCCcEEEEEe
Q 037028 309 EFLAVEKSLETLQAKDINVEDGEVLVMNSILELHCVVKESRGALNSVLQRL-HQLSPKVVMLVE 371 (503)
Q Consensus 309 eF~~v~~~le~l~~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~I-r~L~PkvvvlvE 371 (503)
+|... ++.++. ..++..=+|-|...++|+.+ + ..+|+.+ +.|+|.-.+++.
T Consensus 317 ~~~~~--d~~~~~-----~~~~~fD~I~s~~~l~h~~d----~-~~~l~~~~r~LkpgG~l~i~ 368 (475)
T PLN02336 317 EFEVA--DCTKKT-----YPDNSFDVIYSRDTILHIQD----K-PALFRSFFKWLKPGGKVLIS 368 (475)
T ss_pred EEEEc--CcccCC-----CCCCCEEEEEECCcccccCC----H-HHHHHHHHHHcCCCeEEEEE
Confidence 66432 222221 11222334445556788754 1 2444444 678998665554
No 17
>PRK08317 hypothetical protein; Provisional
Probab=85.02 E-value=35 Score=32.30 Aligned_cols=114 Identities=22% Similarity=0.293 Sum_probs=57.7
Q ss_pred HHhhhcCCceeEEeeeccccCCCCccchhhhHHHHhcCCCCCCCcEEEeeecCCchhHHHHHHHHHHHHhhCCCcEEEee
Q 037028 233 ILEAFEGESLVHVVDLGMTLGLPHGRQWHSLMQSLVNRSGKVPKRLKITGVGNCSERLGEIGDELKRYADGLKLNFEFLA 312 (503)
Q Consensus 233 ILEA~~g~~~VHIVDfgi~~G~~~G~QWpsLiqaLA~R~ggpP~~LRITgI~~~~~~l~~tg~rL~~fA~~lgipFeF~~ 312 (503)
+++.+.-...-+|+|+|.+. | +|. ..++.+- +| .-++|+|+.+...++.+.++. ...+...+|..
T Consensus 11 ~~~~~~~~~~~~vLdiG~G~----G-~~~---~~~a~~~--~~-~~~v~~~d~~~~~~~~a~~~~----~~~~~~~~~~~ 75 (241)
T PRK08317 11 TFELLAVQPGDRVLDVGCGP----G-NDA---RELARRV--GP-EGRVVGIDRSEAMLALAKERA----AGLGPNVEFVR 75 (241)
T ss_pred HHHHcCCCCCCEEEEeCCCC----C-HHH---HHHHHhc--CC-CcEEEEEeCCHHHHHHHHHHh----hCCCCceEEEe
Confidence 55666655666899999753 3 343 3444433 23 469999998876665555441 12233344433
Q ss_pred ecccccccCcccccccCCcEEEEEeccccccccccccchHHHHHHHH-HhcCCcE-EEEEeec
Q 037028 313 VEKSLETLQAKDINVEDGEVLVMNSILELHCVVKESRGALNSVLQRL-HQLSPKV-VMLVEQD 373 (503)
Q Consensus 313 v~~~le~l~~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~I-r~L~Pkv-vvlvE~e 373 (503)
. +.+++. ..++..=+|.+...++|+.+. ..+|+.+ +.|+|.- ++++|.+
T Consensus 76 ~--d~~~~~-----~~~~~~D~v~~~~~~~~~~~~-----~~~l~~~~~~L~~gG~l~~~~~~ 126 (241)
T PRK08317 76 G--DADGLP-----FPDGSFDAVRSDRVLQHLEDP-----ARALAEIARVLRPGGRVVVLDTD 126 (241)
T ss_pred c--ccccCC-----CCCCCceEEEEechhhccCCH-----HHHHHHHHHHhcCCcEEEEEecC
Confidence 2 222221 112222223334445776541 2344444 5688975 4444543
No 18
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=83.80 E-value=44 Score=33.58 Aligned_cols=116 Identities=17% Similarity=0.214 Sum_probs=61.3
Q ss_pred HhhhHHHHhhhcCCceeEEeeeccccCCCCccchhhhHHHHhcCCCCCCCcEEEeeecCCchhHHHHHHHHHHHHhhCCC
Q 037028 227 FVANASILEAFEGESLVHVVDLGMTLGLPHGRQWHSLMQSLVNRSGKVPKRLKITGVGNCSERLGEIGDELKRYADGLKL 306 (503)
Q Consensus 227 ftANqAILEA~~g~~~VHIVDfgi~~G~~~G~QWpsLiqaLA~R~ggpP~~LRITgI~~~~~~l~~tg~rL~~fA~~lgi 306 (503)
.-+.+.+++.+.-...-+|+|+|.+.| . + ...|+.+. ..++|||+.+...++...++... .-
T Consensus 38 ~~~~~~~l~~l~l~~~~~VLDiGcG~G----~-~---a~~la~~~-----~~~v~giD~s~~~~~~a~~~~~~-----~~ 99 (263)
T PTZ00098 38 IEATTKILSDIELNENSKVLDIGSGLG----G-G---CKYINEKY-----GAHVHGVDICEKMVNIAKLRNSD-----KN 99 (263)
T ss_pred hHHHHHHHHhCCCCCCCEEEEEcCCCC----h-h---hHHHHhhc-----CCEEEEEECCHHHHHHHHHHcCc-----CC
Confidence 445677777776666778999997644 2 1 23444432 25899999877666665554322 12
Q ss_pred cEEEeeecccccccCcccccccCCcEEEEEeccccccccccccchHHHHHHHH-HhcCCcEEEEE
Q 037028 307 NFEFLAVEKSLETLQAKDINVEDGEVLVMNSILELHCVVKESRGALNSVLQRL-HQLSPKVVMLV 370 (503)
Q Consensus 307 pFeF~~v~~~le~l~~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~I-r~L~Pkvvvlv 370 (503)
..+|... +..+. ...++..=+|-+...++|+..+ ....+|+.+ +.|+|.-.+++
T Consensus 100 ~i~~~~~--D~~~~-----~~~~~~FD~V~s~~~l~h~~~~---d~~~~l~~i~r~LkPGG~lvi 154 (263)
T PTZ00098 100 KIEFEAN--DILKK-----DFPENTFDMIYSRDAILHLSYA---DKKKLFEKCYKWLKPNGILLI 154 (263)
T ss_pred ceEEEEC--CcccC-----CCCCCCeEEEEEhhhHHhCCHH---HHHHHHHHHHHHcCCCcEEEE
Confidence 2444322 22211 1112212122233345665421 234666655 67899744443
No 19
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=83.74 E-value=15 Score=37.78 Aligned_cols=121 Identities=18% Similarity=0.146 Sum_probs=69.9
Q ss_pred HHhhhcCCceeEEeeeccccCCCCccchhhhHHHHhcCCCCCCCcEEEeeecCCchhHHHHHHHHHHHHhhCCCcEEEee
Q 037028 233 ILEAFEGESLVHVVDLGMTLGLPHGRQWHSLMQSLVNRSGKVPKRLKITGVGNCSERLGEIGDELKRYADGLKLNFEFLA 312 (503)
Q Consensus 233 ILEA~~g~~~VHIVDfgi~~G~~~G~QWpsLiqaLA~R~ggpP~~LRITgI~~~~~~l~~tg~rL~~fA~~lgipFeF~~ 312 (503)
|.+.+. ....|||+|.| .|.-=..|++++.. ..++|+|+.+.+.|+.+.++|.+- .-++++++
T Consensus 57 ia~~~~--~~~~iLELGcG----tG~~t~~Ll~~l~~-------~~~~~~iDiS~~mL~~a~~~l~~~--~p~~~v~~-- 119 (301)
T TIGR03438 57 IAAATG--AGCELVELGSG----SSRKTRLLLDALRQ-------PARYVPIDISADALKESAAALAAD--YPQLEVHG-- 119 (301)
T ss_pred HHHhhC--CCCeEEecCCC----cchhHHHHHHhhcc-------CCeEEEEECCHHHHHHHHHHHHhh--CCCceEEE--
Confidence 444443 23579999974 44433456666632 278999999999999998888641 12344443
Q ss_pred ecccccccCcccccccCCcEEEEEeccccccccccccchHHHHHHHH-HhcCCcEEEEEeec
Q 037028 313 VEKSLETLQAKDINVEDGEVLVMNSILELHCVVKESRGALNSVLQRL-HQLSPKVVMLVEQD 373 (503)
Q Consensus 313 v~~~le~l~~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~I-r~L~PkvvvlvE~e 373 (503)
+..++.+..+..-....+..+++.+...++++..+ ....+|+.+ +.|+|.-..++.-|
T Consensus 120 i~gD~~~~~~~~~~~~~~~~~~~~~gs~~~~~~~~---e~~~~L~~i~~~L~pgG~~lig~d 178 (301)
T TIGR03438 120 ICADFTQPLALPPEPAAGRRLGFFPGSTIGNFTPE---EAVAFLRRIRQLLGPGGGLLIGVD 178 (301)
T ss_pred EEEcccchhhhhcccccCCeEEEEecccccCCCHH---HHHHHHHHHHHhcCCCCEEEEecc
Confidence 33333221000000112246677666667777532 345788887 46899766665444
No 20
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=83.62 E-value=22 Score=37.22 Aligned_cols=100 Identities=20% Similarity=0.240 Sum_probs=55.3
Q ss_pred eeEEeeeccccCCCCccchhhhHHHHhcCCCCCCCcEEEeeecCCchhHHHHHHHHHHHHhhCCC--cEEEeeecccccc
Q 037028 242 LVHVVDLGMTLGLPHGRQWHSLMQSLVNRSGKVPKRLKITGVGNCSERLGEIGDELKRYADGLKL--NFEFLAVEKSLET 319 (503)
Q Consensus 242 ~VHIVDfgi~~G~~~G~QWpsLiqaLA~R~ggpP~~LRITgI~~~~~~l~~tg~rL~~fA~~lgi--pFeF~~v~~~le~ 319 (503)
.-.|+|+|.|.| . +...|+. .| .++|||+...+.++...++ ++..++ ..+|.. .+.++
T Consensus 132 g~~ILDIGCG~G----~----~s~~La~-~g-----~~V~GID~s~~~i~~Ar~~----~~~~~~~~~i~~~~--~dae~ 191 (322)
T PLN02396 132 GLKFIDIGCGGG----L----LSEPLAR-MG-----ATVTGVDAVDKNVKIARLH----ADMDPVTSTIEYLC--TTAEK 191 (322)
T ss_pred CCEEEEeeCCCC----H----HHHHHHH-cC-----CEEEEEeCCHHHHHHHHHH----HHhcCcccceeEEe--cCHHH
Confidence 347999997533 2 4556664 22 5899999887666555443 222222 344432 23343
Q ss_pred cCcccccccCCcEEEEEeccccccccccccchHHHHHHHHH-hcCCcEEEEEe
Q 037028 320 LQAKDINVEDGEVLVMNSILELHCVVKESRGALNSVLQRLH-QLSPKVVMLVE 371 (503)
Q Consensus 320 l~~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~Ir-~L~PkvvvlvE 371 (503)
+.. .++..=+|-|..-|||+.+. ..+|+.++ -|+|.-.+++.
T Consensus 192 l~~-----~~~~FD~Vi~~~vLeHv~d~-----~~~L~~l~r~LkPGG~liis 234 (322)
T PLN02396 192 LAD-----EGRKFDAVLSLEVIEHVANP-----AEFCKSLSALTIPNGATVLS 234 (322)
T ss_pred hhh-----ccCCCCEEEEhhHHHhcCCH-----HHHHHHHHHHcCCCcEEEEE
Confidence 321 12222234455577998752 35666664 57997655554
No 21
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=82.91 E-value=14 Score=38.16 Aligned_cols=112 Identities=17% Similarity=0.222 Sum_probs=70.7
Q ss_pred hHhhhHHHHhhhcCCceeEEeeeccccCCCCccchhhhHHHHhcCCCCCCCcEEEeeecCCchhHHHHHHHHHHHHhhCC
Q 037028 226 HFVANASILEAFEGESLVHVVDLGMTLGLPHGRQWHSLMQSLVNRSGKVPKRLKITGVGNCSERLGEIGDELKRYADGLK 305 (503)
Q Consensus 226 hftANqAILEA~~g~~~VHIVDfgi~~G~~~G~QWpsLiqaLA~R~ggpP~~LRITgI~~~~~~l~~tg~rL~~fA~~lg 305 (503)
.+..-..|++-+.=+.--||+|+| +.|-.|+.-.|.+-| +++|||..+.+-+....+|+ +..|
T Consensus 57 Q~~k~~~~~~kl~L~~G~~lLDiG--------CGWG~l~~~aA~~y~-----v~V~GvTlS~~Q~~~~~~r~----~~~g 119 (283)
T COG2230 57 QRAKLDLILEKLGLKPGMTLLDIG--------CGWGGLAIYAAEEYG-----VTVVGVTLSEEQLAYAEKRI----AARG 119 (283)
T ss_pred HHHHHHHHHHhcCCCCCCEEEEeC--------CChhHHHHHHHHHcC-----CEEEEeeCCHHHHHHHHHHH----HHcC
Confidence 334445566666666788999998 579999999999864 89999998876666555554 5566
Q ss_pred CcEEEeeecccccccCcccccccCCcEEEEEeccccccccccccchHHHHHHHHHh-cCCc
Q 037028 306 LNFEFLAVEKSLETLQAKDINVEDGEVLVMNSILELHCVVKESRGALNSVLQRLHQ-LSPK 365 (503)
Q Consensus 306 ipFeF~~v~~~le~l~~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~Ir~-L~Pk 365 (503)
++=..+.+..++.++... -|-.| ++=.++|+..+ ..+.|++.+++ |+|.
T Consensus 120 l~~~v~v~l~d~rd~~e~-----fDrIv---SvgmfEhvg~~---~~~~ff~~~~~~L~~~ 169 (283)
T COG2230 120 LEDNVEVRLQDYRDFEEP-----FDRIV---SVGMFEHVGKE---NYDDFFKKVYALLKPG 169 (283)
T ss_pred CCcccEEEeccccccccc-----cceee---ehhhHHHhCcc---cHHHHHHHHHhhcCCC
Confidence 652222333345555432 12222 23344666543 24689988865 6776
No 22
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=82.16 E-value=14 Score=36.52 Aligned_cols=105 Identities=23% Similarity=0.302 Sum_probs=58.7
Q ss_pred HHHhhhcCCceeEEeeeccccCCCCccchhhhHHHHhcCCCCCCCcEEEeeecCCchhHHHHHHHHHHHHhhCCCcEEEe
Q 037028 232 SILEAFEGESLVHVVDLGMTLGLPHGRQWHSLMQSLVNRSGKVPKRLKITGVGNCSERLGEIGDELKRYADGLKLNFEFL 311 (503)
Q Consensus 232 AILEA~~g~~~VHIVDfgi~~G~~~G~QWpsLiqaLA~R~ggpP~~LRITgI~~~~~~l~~tg~rL~~fA~~lgipFeF~ 311 (503)
.+++.+.-...-+|+|+|.|. | .+...|+.+- | ..++|||+.+...++.+ +..++.| .
T Consensus 20 ~ll~~l~~~~~~~vLDlGcG~----G----~~~~~l~~~~---p-~~~v~gvD~s~~~~~~a--------~~~~~~~--~ 77 (255)
T PRK14103 20 DLLARVGAERARRVVDLGCGP----G----NLTRYLARRW---P-GAVIEALDSSPEMVAAA--------RERGVDA--R 77 (255)
T ss_pred HHHHhCCCCCCCEEEEEcCCC----C----HHHHHHHHHC---C-CCEEEEEECCHHHHHHH--------HhcCCcE--E
Confidence 466666655567899999643 3 3455677653 3 36899999876555443 3335443 2
Q ss_pred eecccccccCcccccccCCcEEEEEeccccccccccccchHHHHHH-HHHhcCCcEEEEEe
Q 037028 312 AVEKSLETLQAKDINVEDGEVLVMNSILELHCVVKESRGALNSVLQ-RLHQLSPKVVMLVE 371 (503)
Q Consensus 312 ~v~~~le~l~~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~-~Ir~L~PkvvvlvE 371 (503)
..+.+++.++ ..=+.|+. ...|||+.+. ..+|+ ..+.|+|.-.+++.
T Consensus 78 --~~d~~~~~~~----~~fD~v~~--~~~l~~~~d~-----~~~l~~~~~~LkpgG~l~~~ 125 (255)
T PRK14103 78 --TGDVRDWKPK----PDTDVVVS--NAALQWVPEH-----ADLLVRWVDELAPGSWIAVQ 125 (255)
T ss_pred --EcChhhCCCC----CCceEEEE--ehhhhhCCCH-----HHHHHHHHHhCCCCcEEEEE
Confidence 2233333211 11234444 4456887531 34454 45779998665554
No 23
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=81.92 E-value=20 Score=38.87 Aligned_cols=137 Identities=17% Similarity=0.308 Sum_probs=69.8
Q ss_pred HHHHhhhcCCceeEEeeeccccCCCCccchhhhHHHHhcCCCCCCCcEEEeeecCCchhHHHHHHHHHHHHhhCCCcEEE
Q 037028 231 ASILEAFEGESLVHVVDLGMTLGLPHGRQWHSLMQSLVNRSGKVPKRLKITGVGNCSERLGEIGDELKRYADGLKLNFEF 310 (503)
Q Consensus 231 qAILEA~~g~~~VHIVDfgi~~G~~~G~QWpsLiqaLA~R~ggpP~~LRITgI~~~~~~l~~tg~rL~~fA~~lgipFeF 310 (503)
..|++.+.....-+|+|+|.|. | .+...|+.+. -++|||+.....++...+ +. ...-..+|
T Consensus 27 ~~il~~l~~~~~~~vLDlGcG~----G----~~~~~la~~~------~~v~giD~s~~~l~~a~~-~~----~~~~~i~~ 87 (475)
T PLN02336 27 PEILSLLPPYEGKSVLELGAGI----G----RFTGELAKKA------GQVIALDFIESVIKKNES-IN----GHYKNVKF 87 (475)
T ss_pred hHHHhhcCccCCCEEEEeCCCc----C----HHHHHHHhhC------CEEEEEeCCHHHHHHHHH-Hh----ccCCceEE
Confidence 4556666544444899999753 4 3334455541 278999987666644221 11 11112333
Q ss_pred eeecccccccCcccccccCCcEEEEEeccccccccccccchHHHHHHHH-HhcCCcEEEEEeecCCCC--------CCch
Q 037028 311 LAVEKSLETLQAKDINVEDGEVLVMNSILELHCVVKESRGALNSVLQRL-HQLSPKVVMLVEQDSSHN--------GPFF 381 (503)
Q Consensus 311 ~~v~~~le~l~~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~I-r~L~PkvvvlvE~ea~~n--------s~~F 381 (503)
.. .++++. .+...++..=+|-|.+.|||+.++ ....+|+.+ +-|+|...++....+-++ .|++
T Consensus 88 ~~--~d~~~~---~~~~~~~~fD~I~~~~~l~~l~~~---~~~~~l~~~~r~Lk~gG~l~~~d~~~~~~~~~~~~~~~~~ 159 (475)
T PLN02336 88 MC--ADVTSP---DLNISDGSVDLIFSNWLLMYLSDK---EVENLAERMVKWLKVGGYIFFRESCFHQSGDSKRKNNPTH 159 (475)
T ss_pred EE--eccccc---ccCCCCCCEEEEehhhhHHhCCHH---HHHHHHHHHHHhcCCCeEEEEEeccCCCCCcccccCCCCe
Confidence 22 122111 122223333344455678998653 245677666 458998666553333222 2333
Q ss_pred HHHHHHHHHHHHHHHhh
Q 037028 382 LGRFMEALHYYSAIFDS 398 (503)
Q Consensus 382 ~~RF~eAL~yYsAlFDS 398 (503)
. ....+|..+|+.
T Consensus 160 ~----~~~~~~~~~f~~ 172 (475)
T PLN02336 160 Y----REPRFYTKVFKE 172 (475)
T ss_pred e----cChHHHHHHHHH
Confidence 2 124577777765
No 24
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=80.43 E-value=42 Score=35.06 Aligned_cols=103 Identities=19% Similarity=0.192 Sum_probs=59.3
Q ss_pred ceeEEeeeccccCCCCccchhhhHHHHhcCCCCCCCcEEEeeecCCchhHHHHHHHHHHHHh-h-CCCcEEEeeeccccc
Q 037028 241 SLVHVVDLGMTLGLPHGRQWHSLMQSLVNRSGKVPKRLKITGVGNCSERLGEIGDELKRYAD-G-LKLNFEFLAVEKSLE 318 (503)
Q Consensus 241 ~~VHIVDfgi~~G~~~G~QWpsLiqaLA~R~ggpP~~LRITgI~~~~~~l~~tg~rL~~fA~-~-lgipFeF~~v~~~le 318 (503)
+...|+|+|.|- | .+...|+.+ | .+||||+.+...++...++..+.-. . -+...+|... +++
T Consensus 144 ~~~~VLDlGcGt----G----~~a~~la~~-g-----~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~--Dl~ 207 (315)
T PLN02585 144 AGVTVCDAGCGT----G----SLAIPLALE-G-----AIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEAN--DLE 207 (315)
T ss_pred CCCEEEEecCCC----C----HHHHHHHHC-C-----CEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEc--chh
Confidence 456899999643 2 244556654 2 4899999988888777666533210 0 1234455432 333
Q ss_pred ccCcccccccCCcEEEEEeccccccccccccchHHHHHHHHHhcCCcEEEEE
Q 037028 319 TLQAKDINVEDGEVLVMNSILELHCVVKESRGALNSVLQRLHQLSPKVVMLV 370 (503)
Q Consensus 319 ~l~~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~Ir~L~Pkvvvlv 370 (503)
+++ ..=+ +|-|...|+|+.++ ....+++.++.+.|..+++.
T Consensus 208 ~l~------~~fD--~Vv~~~vL~H~p~~---~~~~ll~~l~~l~~g~liIs 248 (315)
T PLN02585 208 SLS------GKYD--TVTCLDVLIHYPQD---KADGMIAHLASLAEKRLIIS 248 (315)
T ss_pred hcC------CCcC--EEEEcCEEEecCHH---HHHHHHHHHHhhcCCEEEEE
Confidence 331 1112 23355556777653 24568888888888877664
No 25
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=80.15 E-value=16 Score=37.41 Aligned_cols=113 Identities=14% Similarity=0.181 Sum_probs=63.9
Q ss_pred HHHHhhhcCCceeEEeeeccccCCCCccchhhhHHHHhcCCCCCCCcEEEeeecCCchhHHHHHHHHHHHHhhCCCcEEE
Q 037028 231 ASILEAFEGESLVHVVDLGMTLGLPHGRQWHSLMQSLVNRSGKVPKRLKITGVGNCSERLGEIGDELKRYADGLKLNFEF 310 (503)
Q Consensus 231 qAILEA~~g~~~VHIVDfgi~~G~~~G~QWpsLiqaLA~R~ggpP~~LRITgI~~~~~~l~~tg~rL~~fA~~lgipFeF 310 (503)
.-|+|.+.=+.-=||+|+| +.|-.++..+|++.| .++|||..+.+-.+.+.+ .++..|++=..
T Consensus 52 ~~~~~~~~l~~G~~vLDiG--------cGwG~~~~~~a~~~g-----~~v~gitlS~~Q~~~a~~----~~~~~gl~~~v 114 (273)
T PF02353_consen 52 DLLCEKLGLKPGDRVLDIG--------CGWGGLAIYAAERYG-----CHVTGITLSEEQAEYARE----RIREAGLEDRV 114 (273)
T ss_dssp HHHHTTTT--TT-EEEEES---------TTSHHHHHHHHHH-------EEEEEES-HHHHHHHHH----HHHCSTSSSTE
T ss_pred HHHHHHhCCCCCCEEEEeC--------CCccHHHHHHHHHcC-----cEEEEEECCHHHHHHHHH----HHHhcCCCCce
Confidence 4566666555566999998 468899999999864 689999977655544444 44677876333
Q ss_pred eeecccccccCcccccccCCcEEEEEeccccccccccccchHHHHHHHH-HhcCCcEEEEEe
Q 037028 311 LAVEKSLETLQAKDINVEDGEVLVMNSILELHCVVKESRGALNSVLQRL-HQLSPKVVMLVE 371 (503)
Q Consensus 311 ~~v~~~le~l~~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~I-r~L~PkvvvlvE 371 (503)
..+..+..+++. .=|-++.| -.+-|+.. .....|++.+ +-|+|.-.+++.
T Consensus 115 ~v~~~D~~~~~~-----~fD~IvSi---~~~Ehvg~---~~~~~~f~~~~~~LkpgG~~~lq 165 (273)
T PF02353_consen 115 EVRLQDYRDLPG-----KFDRIVSI---EMFEHVGR---KNYPAFFRKISRLLKPGGRLVLQ 165 (273)
T ss_dssp EEEES-GGG--------S-SEEEEE---SEGGGTCG---GGHHHHHHHHHHHSETTEEEEEE
T ss_pred EEEEeeccccCC-----CCCEEEEE---echhhcCh---hHHHHHHHHHHHhcCCCcEEEEE
Confidence 333233443333 11223333 23455543 2356888888 568998666654
No 26
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=78.38 E-value=18 Score=35.66 Aligned_cols=111 Identities=23% Similarity=0.317 Sum_probs=61.1
Q ss_pred hHHHHhhhcCCceeEEeeeccccCCCCccchhhhHHHHhcCCCCCCCcEEEeeecCCchhHHHHHHHHHHHHhhCCCcEE
Q 037028 230 NASILEAFEGESLVHVVDLGMTLGLPHGRQWHSLMQSLVNRSGKVPKRLKITGVGNCSERLGEIGDELKRYADGLKLNFE 309 (503)
Q Consensus 230 NqAILEA~~g~~~VHIVDfgi~~G~~~G~QWpsLiqaLA~R~ggpP~~LRITgI~~~~~~l~~tg~rL~~fA~~lgipFe 309 (503)
+..+++.+.-.+.-+|+|+|.|.| .| ...|+.+. | ..+++||+.+...++.+.+++ -..+
T Consensus 20 ~~~ll~~~~~~~~~~vLDiGcG~G-----~~---~~~la~~~---~-~~~v~gvD~s~~~i~~a~~~~--------~~~~ 79 (258)
T PRK01683 20 ARDLLARVPLENPRYVVDLGCGPG-----NS---TELLVERW---P-AARITGIDSSPAMLAEARSRL--------PDCQ 79 (258)
T ss_pred HHHHHhhCCCcCCCEEEEEcccCC-----HH---HHHHHHHC---C-CCEEEEEECCHHHHHHHHHhC--------CCCe
Confidence 556677666556678999997543 33 44566552 2 369999998876665554442 1233
Q ss_pred EeeecccccccCcccccccCCcEEEEEeccccccccccccchHHHHHHHHHhcCCcEEEEEee
Q 037028 310 FLAVEKSLETLQAKDINVEDGEVLVMNSILELHCVVKESRGALNSVLQRLHQLSPKVVMLVEQ 372 (503)
Q Consensus 310 F~~v~~~le~l~~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~Ir~L~PkvvvlvE~ 372 (503)
|.. .+++++.+. ..=+.++ +...||++.+. ...+-+..+.|+|.-.+++..
T Consensus 80 ~~~--~d~~~~~~~----~~fD~v~--~~~~l~~~~d~----~~~l~~~~~~LkpgG~~~~~~ 130 (258)
T PRK01683 80 FVE--ADIASWQPP----QALDLIF--ANASLQWLPDH----LELFPRLVSLLAPGGVLAVQM 130 (258)
T ss_pred EEE--CchhccCCC----CCccEEE--EccChhhCCCH----HHHHHHHHHhcCCCcEEEEEC
Confidence 432 223322211 1113444 44556887542 223444447789987666653
No 27
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=76.50 E-value=72 Score=30.40 Aligned_cols=116 Identities=19% Similarity=0.225 Sum_probs=57.5
Q ss_pred HHhhhcCCceeEEeeeccccCCCCccchhhhHHHHhcCCCCCCCcEEEeeecCCchhHHHHHHHHHHHHhhCCCcEEEee
Q 037028 233 ILEAFEGESLVHVVDLGMTLGLPHGRQWHSLMQSLVNRSGKVPKRLKITGVGNCSERLGEIGDELKRYADGLKLNFEFLA 312 (503)
Q Consensus 233 ILEA~~g~~~VHIVDfgi~~G~~~G~QWpsLiqaLA~R~ggpP~~LRITgI~~~~~~l~~tg~rL~~fA~~lgipFeF~~ 312 (503)
+++.+.-....+|+|+|.+. |. +...++.+- |+ ..++|+++.+...++.+.+++... .+..+..|..
T Consensus 43 ~~~~~~~~~~~~vldiG~G~----G~----~~~~l~~~~--~~-~~~v~~~D~s~~~~~~a~~~~~~~--~~~~~~~~~~ 109 (239)
T PRK00216 43 TIKWLGVRPGDKVLDLACGT----GD----LAIALAKAV--GK-TGEVVGLDFSEGMLAVGREKLRDL--GLSGNVEFVQ 109 (239)
T ss_pred HHHHhCCCCCCeEEEeCCCC----CH----HHHHHHHHc--CC-CCeEEEEeCCHHHHHHHHHhhccc--ccccCeEEEe
Confidence 34444333457899999753 32 333344332 33 589999998776666665554321 1223344433
Q ss_pred ecccccccCcccccccCCcEEEEEeccccccccccccchHHHHHHHH-HhcCCcEE-EEEeec
Q 037028 313 VEKSLETLQAKDINVEDGEVLVMNSILELHCVVKESRGALNSVLQRL-HQLSPKVV-MLVEQD 373 (503)
Q Consensus 313 v~~~le~l~~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~I-r~L~Pkvv-vlvE~e 373 (503)
.+..++. +....-+.|+ +.+.||++.+ ...+|+.+ +.|+|.-. +++|..
T Consensus 110 --~d~~~~~---~~~~~~D~I~--~~~~l~~~~~-----~~~~l~~~~~~L~~gG~li~~~~~ 160 (239)
T PRK00216 110 --GDAEALP---FPDNSFDAVT--IAFGLRNVPD-----IDKALREMYRVLKPGGRLVILEFS 160 (239)
T ss_pred --cccccCC---CCCCCccEEE--EecccccCCC-----HHHHHHHHHHhccCCcEEEEEEec
Confidence 2232221 1111123433 3445676543 34555554 56788744 444443
No 28
>PRK06922 hypothetical protein; Provisional
Probab=76.35 E-value=1.1e+02 Score=35.62 Aligned_cols=110 Identities=14% Similarity=0.188 Sum_probs=59.0
Q ss_pred eeEEeeeccccCCCCccchhhhHHHHhcCCCCCCCcEEEeeecCCchhHHHHHHHHHHHHhhCCCcEEEeeecccccccC
Q 037028 242 LVHVVDLGMTLGLPHGRQWHSLMQSLVNRSGKVPKRLKITGVGNCSERLGEIGDELKRYADGLKLNFEFLAVEKSLETLQ 321 (503)
Q Consensus 242 ~VHIVDfgi~~G~~~G~QWpsLiqaLA~R~ggpP~~LRITgI~~~~~~l~~tg~rL~~fA~~lgipFeF~~v~~~le~l~ 321 (503)
.-.|+|+|.|. | .+...|+.+. | ..++|||+.+...++.+.+++. ..|.++++ +..+..++.
T Consensus 419 g~rVLDIGCGT----G----~ls~~LA~~~---P-~~kVtGIDIS~~MLe~Ararl~----~~g~~ie~--I~gDa~dLp 480 (677)
T PRK06922 419 GDTIVDVGAGG----G----VMLDMIEEET---E-DKRIYGIDISENVIDTLKKKKQ----NEGRSWNV--IKGDAINLS 480 (677)
T ss_pred CCEEEEeCCCC----C----HHHHHHHHhC---C-CCEEEEEECCHHHHHHHHHHhh----hcCCCeEE--EEcchHhCc
Confidence 34799999653 3 3445566652 3 4899999998877777665542 33455444 322222221
Q ss_pred cccccccCCcEEEEEecccccccccc----c----cchHHHHHHHH-HhcCCc-EEEEEee
Q 037028 322 AKDINVEDGEVLVMNSILELHCVVKE----S----RGALNSVLQRL-HQLSPK-VVMLVEQ 372 (503)
Q Consensus 322 ~~~l~~~~~EaLaVN~~~~Lh~l~~e----s----~~~~~~~L~~I-r~L~Pk-vvvlvE~ 372 (503)
.. ..++.+=+|-+.+.+|++..- . ......+|+.+ +.|+|. .++++|.
T Consensus 481 -~~--fedeSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~ 538 (677)
T PRK06922 481 -SS--FEKESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG 538 (677)
T ss_pred -cc--cCCCCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 00 223333333345556776421 0 11234556555 789996 4455554
No 29
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=75.67 E-value=25 Score=35.78 Aligned_cols=107 Identities=20% Similarity=0.270 Sum_probs=57.7
Q ss_pred HHHhhhcCCceeEEeeeccccCCCCccchhhhHHHHhcCCCCCCCcEEEeeecCCchhHHHHHHHHHHHHhhCCCcEEEe
Q 037028 232 SILEAFEGESLVHVVDLGMTLGLPHGRQWHSLMQSLVNRSGKVPKRLKITGVGNCSERLGEIGDELKRYADGLKLNFEFL 311 (503)
Q Consensus 232 AILEA~~g~~~VHIVDfgi~~G~~~G~QWpsLiqaLA~R~ggpP~~LRITgI~~~~~~l~~tg~rL~~fA~~lgipFeF~ 311 (503)
.+++++.--+.-+|+|+|.|.| . +...|+.+ | .++|||+.+...++.+. +.|+..|+++++.
T Consensus 111 ~~~~~~~~~~~~~vLDlGcG~G----~----~~~~la~~-g-----~~V~avD~s~~ai~~~~----~~~~~~~l~v~~~ 172 (287)
T PRK12335 111 EVLEAVQTVKPGKALDLGCGQG----R----NSLYLALL-G-----FDVTAVDINQQSLENLQ----EIAEKENLNIRTG 172 (287)
T ss_pred HHHHHhhccCCCCEEEeCCCCC----H----HHHHHHHC-C-----CEEEEEECCHHHHHHHH----HHHHHcCCceEEE
Confidence 3444443222238999997543 2 33445653 2 58999998866665443 4455667766664
Q ss_pred eecccccccCcccccccCCcEEEEEeccccccccccccchHHHHHHHH-HhcCCcEE
Q 037028 312 AVEKSLETLQAKDINVEDGEVLVMNSILELHCVVKESRGALNSVLQRL-HQLSPKVV 367 (503)
Q Consensus 312 ~v~~~le~l~~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~I-r~L~Pkvv 367 (503)
.. +++... +. ..=+.++.+. .||++..+ ....+|+.+ +.|+|.-+
T Consensus 173 ~~--D~~~~~---~~-~~fD~I~~~~--vl~~l~~~---~~~~~l~~~~~~LkpgG~ 218 (287)
T PRK12335 173 LY--DINSAS---IQ-EEYDFILSTV--VLMFLNRE---RIPAIIKNMQEHTNPGGY 218 (287)
T ss_pred Ee--chhccc---cc-CCccEEEEcc--hhhhCCHH---HHHHHHHHHHHhcCCCcE
Confidence 32 222211 10 1113444443 45776432 345667665 67899754
No 30
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=75.12 E-value=24 Score=35.05 Aligned_cols=112 Identities=11% Similarity=0.093 Sum_probs=60.2
Q ss_pred HHHhhhcCCceeEEeeeccccCCCCccchhhhHHHHhcCCCCCCCcEEEeeecCCchhHHHHHHHHHHHHhhCCCcEEEe
Q 037028 232 SILEAFEGESLVHVVDLGMTLGLPHGRQWHSLMQSLVNRSGKVPKRLKITGVGNCSERLGEIGDELKRYADGLKLNFEFL 311 (503)
Q Consensus 232 AILEA~~g~~~VHIVDfgi~~G~~~G~QWpsLiqaLA~R~ggpP~~LRITgI~~~~~~l~~tg~rL~~fA~~lgipFeF~ 311 (503)
.|++.+. .+.-+|+|+|.|. | .+...|+.+ + .++|+|+.+.+.++.+.+++ +..|+.-...
T Consensus 36 ~~l~~l~-~~~~~vLDiGcG~----G----~~a~~la~~-g-----~~v~~vD~s~~~l~~a~~~~----~~~g~~~~v~ 96 (255)
T PRK11036 36 RLLAELP-PRPLRVLDAGGGE----G----QTAIKLAEL-G-----HQVILCDLSAEMIQRAKQAA----EAKGVSDNMQ 96 (255)
T ss_pred HHHHhcC-CCCCEEEEeCCCc----h----HHHHHHHHc-C-----CEEEEEECCHHHHHHHHHHH----HhcCCccceE
Confidence 4666665 3446999999753 3 244556654 2 47999998877777666554 3345432222
Q ss_pred eecccccccCcccccccCCcEEEEEeccccccccccccchHHHHHHHHHhcCCcEEEEE
Q 037028 312 AVEKSLETLQAKDINVEDGEVLVMNSILELHCVVKESRGALNSVLQRLHQLSPKVVMLV 370 (503)
Q Consensus 312 ~v~~~le~l~~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~Ir~L~Pkvvvlv 370 (503)
.+..+.+++.+. .-..=++|+ |...|||+.+ +...+-...+-|+|.-.+++
T Consensus 97 ~~~~d~~~l~~~--~~~~fD~V~--~~~vl~~~~~----~~~~l~~~~~~LkpgG~l~i 147 (255)
T PRK11036 97 FIHCAAQDIAQH--LETPVDLIL--FHAVLEWVAD----PKSVLQTLWSVLRPGGALSL 147 (255)
T ss_pred EEEcCHHHHhhh--cCCCCCEEE--ehhHHHhhCC----HHHHHHHHHHHcCCCeEEEE
Confidence 233344443221 001113333 4455677743 12233344567899755543
No 31
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=74.82 E-value=14 Score=29.51 Aligned_cols=75 Identities=20% Similarity=0.259 Sum_probs=41.7
Q ss_pred cEEEeeecCCchhHHHHHHHHHHHHhhCCCcEEEeeecccccccCcccccccCCcEEEEEeccccccccccccchHHHHH
Q 037028 277 RLKITGVGNCSERLGEIGDELKRYADGLKLNFEFLAVEKSLETLQAKDINVEDGEVLVMNSILELHCVVKESRGALNSVL 356 (503)
Q Consensus 277 ~LRITgI~~~~~~l~~tg~rL~~fA~~lgipFeF~~v~~~le~l~~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L 356 (503)
-.++|+++...+.++...+++ +..+++ |. ..+.++ +...++-.=+|-+...+||+ . ....++
T Consensus 19 ~~~v~~~D~~~~~~~~~~~~~----~~~~~~--~~--~~d~~~-----l~~~~~sfD~v~~~~~~~~~-~----~~~~~l 80 (95)
T PF08241_consen 19 GASVTGIDISEEMLEQARKRL----KNEGVS--FR--QGDAED-----LPFPDNSFDVVFSNSVLHHL-E----DPEAAL 80 (95)
T ss_dssp TCEEEEEES-HHHHHHHHHHT----TTSTEE--EE--ESBTTS-----SSS-TT-EEEEEEESHGGGS-S----HHHHHH
T ss_pred CCEEEEEeCCHHHHHHHHhcc----cccCch--he--eehHHh-----Cccccccccccccccceeec-c----CHHHHH
Confidence 389999998877666555543 344444 22 222333 34445555566677777888 2 233455
Q ss_pred HHH-HhcCCcEEEE
Q 037028 357 QRL-HQLSPKVVML 369 (503)
Q Consensus 357 ~~I-r~L~Pkvvvl 369 (503)
+.+ |-|+|.-..+
T Consensus 81 ~e~~rvLk~gG~l~ 94 (95)
T PF08241_consen 81 REIYRVLKPGGRLV 94 (95)
T ss_dssp HHHHHHEEEEEEEE
T ss_pred HHHHHHcCcCeEEe
Confidence 444 6788875544
No 32
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=74.74 E-value=40 Score=32.25 Aligned_cols=111 Identities=14% Similarity=0.178 Sum_probs=58.7
Q ss_pred hhHHHHhhhcCCceeEEeeeccccCCCCccchhhhHHHHhcCCCCCCCcEEEeeecCCchhHHHHHHHHHHHHhhCCCc-
Q 037028 229 ANASILEAFEGESLVHVVDLGMTLGLPHGRQWHSLMQSLVNRSGKVPKRLKITGVGNCSERLGEIGDELKRYADGLKLN- 307 (503)
Q Consensus 229 ANqAILEA~~g~~~VHIVDfgi~~G~~~G~QWpsLiqaLA~R~ggpP~~LRITgI~~~~~~l~~tg~rL~~fA~~lgip- 307 (503)
+++.+++.+.....-.|+|+|.|.| . +...||.+ | .+||||+.+...++...++. +..|++
T Consensus 18 ~~~~l~~~l~~~~~~~vLDiGcG~G----~----~a~~La~~-g-----~~V~gvD~S~~~i~~a~~~~----~~~~~~~ 79 (197)
T PRK11207 18 THSEVLEAVKVVKPGKTLDLGCGNG----R----NSLYLAAN-G-----FDVTAWDKNPMSIANLERIK----AAENLDN 79 (197)
T ss_pred ChHHHHHhcccCCCCcEEEECCCCC----H----HHHHHHHC-C-----CEEEEEeCCHHHHHHHHHHH----HHcCCCc
Confidence 3445555555444568999997533 2 33446654 2 48999998876665554432 334443
Q ss_pred EEEeeecccccccCcccccccCCcEEEEEeccccccccccccchHHHHHHHH-HhcCCcEEE
Q 037028 308 FEFLAVEKSLETLQAKDINVEDGEVLVMNSILELHCVVKESRGALNSVLQRL-HQLSPKVVM 368 (503)
Q Consensus 308 FeF~~v~~~le~l~~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~I-r~L~Pkvvv 368 (503)
.++.. .++.++.. . ..=+.|+.+. .+|++.. ..+..+++.+ +.|+|.-.+
T Consensus 80 v~~~~--~d~~~~~~---~-~~fD~I~~~~--~~~~~~~---~~~~~~l~~i~~~LkpgG~~ 130 (197)
T PRK11207 80 LHTAV--VDLNNLTF---D-GEYDFILSTV--VLMFLEA---KTIPGLIANMQRCTKPGGYN 130 (197)
T ss_pred ceEEe--cChhhCCc---C-CCcCEEEEec--chhhCCH---HHHHHHHHHHHHHcCCCcEE
Confidence 33332 23333321 1 1123444443 3576543 2345666655 678998653
No 33
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=71.47 E-value=46 Score=32.03 Aligned_cols=116 Identities=17% Similarity=0.176 Sum_probs=63.5
Q ss_pred hhhHhhhHHHHhhhc--CCceeEEeeeccccCCCCccchhhhHHHHhcCCCCCCCcEEEeeecCCchhHHHHHHHHHHHH
Q 037028 224 FGHFVANASILEAFE--GESLVHVVDLGMTLGLPHGRQWHSLMQSLVNRSGKVPKRLKITGVGNCSERLGEIGDELKRYA 301 (503)
Q Consensus 224 fahftANqAILEA~~--g~~~VHIVDfgi~~G~~~G~QWpsLiqaLA~R~ggpP~~LRITgI~~~~~~l~~tg~rL~~fA 301 (503)
.+|-...+.+++.+. ..+.-+|+|+|-+. | .+...|+.+ ..+||||+.+.+.+....+++..
T Consensus 36 ~~~~~~~~~~~~~l~~~~~~~~~vLDiGcG~----G----~~~~~la~~------~~~v~gvD~s~~~i~~a~~~~~~-- 99 (219)
T TIGR02021 36 EGRAAMRRKLLDWLPKDPLKGKRVLDAGCGT----G----LLSIELAKR------GAIVKAVDISEQMVQMARNRAQG-- 99 (219)
T ss_pred HHHHHHHHHHHHHHhcCCCCCCEEEEEeCCC----C----HHHHHHHHC------CCEEEEEECCHHHHHHHHHHHHh--
Confidence 345555666777665 23566999999643 3 255566654 14899999887777766666543
Q ss_pred hhCCC--cEEEeeecccccccCcccccccCCcEEEEEeccccccccccccchHHHHHHHHHh-cCCcEEEEE
Q 037028 302 DGLKL--NFEFLAVEKSLETLQAKDINVEDGEVLVMNSILELHCVVKESRGALNSVLQRLHQ-LSPKVVMLV 370 (503)
Q Consensus 302 ~~lgi--pFeF~~v~~~le~l~~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~Ir~-L~Pkvvvlv 370 (503)
.++ .++|.. .+++++. ..=++++ +...++|+..+ ....+++.+.. ++|.+++..
T Consensus 100 --~~~~~~i~~~~--~d~~~~~------~~fD~ii--~~~~l~~~~~~---~~~~~l~~i~~~~~~~~~i~~ 156 (219)
T TIGR02021 100 --RDVAGNVEFEV--NDLLSLC------GEFDIVV--CMDVLIHYPAS---DMAKALGHLASLTKERVIFTF 156 (219)
T ss_pred --cCCCCceEEEE--CChhhCC------CCcCEEE--EhhHHHhCCHH---HHHHHHHHHHHHhCCCEEEEE
Confidence 233 355543 2343332 1223333 23344665432 23455665543 566655543
No 34
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=71.37 E-value=14 Score=37.07 Aligned_cols=112 Identities=23% Similarity=0.315 Sum_probs=69.4
Q ss_pred hhcCCceeEEeeeccccCCCCccchhhhHHHHhcCCCCCCCcEEEeeecCCchhHHHHHHHHHHHHhhCCCcEEEeeecc
Q 037028 236 AFEGESLVHVVDLGMTLGLPHGRQWHSLMQSLVNRSGKVPKRLKITGVGNCSERLGEIGDELKRYADGLKLNFEFLAVEK 315 (503)
Q Consensus 236 A~~g~~~VHIVDfgi~~G~~~G~QWpsLiqaLA~R~ggpP~~LRITgI~~~~~~l~~tg~rL~~fA~~lgipFeF~~v~~ 315 (503)
-+.-+.---|+|+|.|- |.+ -+-|++|-. -=.||||+++.+.+++..++| +..+|.. .
T Consensus 25 ~Vp~~~~~~v~DLGCGp----Gns----TelL~~RwP----~A~i~GiDsS~~Mla~Aa~rl--------p~~~f~~--a 82 (257)
T COG4106 25 RVPLERPRRVVDLGCGP----GNS----TELLARRWP----DAVITGIDSSPAMLAKAAQRL--------PDATFEE--A 82 (257)
T ss_pred hCCccccceeeecCCCC----CHH----HHHHHHhCC----CCeEeeccCCHHHHHHHHHhC--------CCCceec--c
Confidence 34455566799999754 333 345666742 367999999988887766654 4445532 2
Q ss_pred cccccCcccccccCCcEEEEEeccccccccccccchHHHHHHHHHhcCCcEEEEEeecCCCCCC
Q 037028 316 SLETLQAKDINVEDGEVLVMNSILELHCVVKESRGALNSVLQRLHQLSPKVVMLVEQDSSHNGP 379 (503)
Q Consensus 316 ~le~l~~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~Ir~L~PkvvvlvE~ea~~ns~ 379 (503)
++.+.+++ .+-..|.-|.+| |-|.+.. +-|-+.+-.|.|.-+.-|---.|+..|
T Consensus 83 Dl~~w~p~----~~~dllfaNAvl--qWlpdH~----~ll~rL~~~L~Pgg~LAVQmPdN~dep 136 (257)
T COG4106 83 DLRTWKPE----QPTDLLFANAVL--QWLPDHP----ELLPRLVSQLAPGGVLAVQMPDNLDEP 136 (257)
T ss_pred cHhhcCCC----Cccchhhhhhhh--hhccccH----HHHHHHHHhhCCCceEEEECCCccCch
Confidence 33333332 233466667776 5555532 456777888999988877665555544
No 35
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=70.69 E-value=59 Score=34.30 Aligned_cols=102 Identities=21% Similarity=0.260 Sum_probs=59.5
Q ss_pred EEeeeccccCCCCccchhhhHHHHhcCCCCCCCcEEEeeecCCchhHHHHHHHHHHHHhhCCCcEEEeeecccccccCcc
Q 037028 244 HVVDLGMTLGLPHGRQWHSLMQSLVNRSGKVPKRLKITGVGNCSERLGEIGDELKRYADGLKLNFEFLAVEKSLETLQAK 323 (503)
Q Consensus 244 HIVDfgi~~G~~~G~QWpsLiqaLA~R~ggpP~~LRITgI~~~~~~l~~tg~rL~~fA~~lgipFeF~~v~~~le~l~~~ 323 (503)
+|+|+|-|.| .+-..|+.+. | ..++|+|+.+...++.+.+++.+ .++..++.. .+.. .
T Consensus 199 ~VLDlGCG~G--------~ls~~la~~~---p-~~~v~~vDis~~Al~~A~~nl~~----n~l~~~~~~--~D~~--~-- 256 (342)
T PRK09489 199 KVLDVGCGAG--------VLSAVLARHS---P-KIRLTLSDVSAAALESSRATLAA----NGLEGEVFA--SNVF--S-- 256 (342)
T ss_pred eEEEeccCcC--------HHHHHHHHhC---C-CCEEEEEECCHHHHHHHHHHHHH----cCCCCEEEE--cccc--c--
Confidence 6999996533 2445566552 3 47899999988778777766643 455555532 2211 1
Q ss_pred cccccCCcEEEEEeccccccccccccchHHHHHHHH-HhcCCcEEEEE
Q 037028 324 DINVEDGEVLVMNSILELHCVVKESRGALNSVLQRL-HQLSPKVVMLV 370 (503)
Q Consensus 324 ~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~I-r~L~Pkvvvlv 370 (503)
.+ -..=+.|+.|-.| |...+........+++.+ +.|+|.-..+.
T Consensus 257 ~~-~~~fDlIvsNPPF--H~g~~~~~~~~~~~i~~a~~~LkpgG~L~i 301 (342)
T PRK09489 257 DI-KGRFDMIISNPPF--HDGIQTSLDAAQTLIRGAVRHLNSGGELRI 301 (342)
T ss_pred cc-CCCccEEEECCCc--cCCccccHHHHHHHHHHHHHhcCcCCEEEE
Confidence 11 1223678888766 654433333345666554 66899754444
No 36
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=70.53 E-value=9.4 Score=38.59 Aligned_cols=55 Identities=16% Similarity=0.066 Sum_probs=35.4
Q ss_pred cCCceeEEeeeccccCCCCccchhhhHHHHhcCC-CCCCCcEEEeeecCCchhHHHHHHH
Q 037028 238 EGESLVHVVDLGMTLGLPHGRQWHSLMQSLVNRS-GKVPKRLKITGVGNCSERLGEIGDE 296 (503)
Q Consensus 238 ~g~~~VHIVDfgi~~G~~~G~QWpsLiqaLA~R~-ggpP~~LRITgI~~~~~~l~~tg~r 296 (503)
...+.++|.|.|.+ .|--.-+|--.|++.- ..++...+|+|++.+...++.+.+.
T Consensus 96 ~~~~~~ri~d~GCg----tGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~ 151 (264)
T smart00138 96 RHGRRVRIWSAGCS----TGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAG 151 (264)
T ss_pred CCCCCEEEEecccc----CChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcC
Confidence 34467999999964 5665555554454431 1112258999999988777666553
No 37
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=70.19 E-value=26 Score=35.67 Aligned_cols=139 Identities=17% Similarity=0.216 Sum_probs=69.8
Q ss_pred hhHhhhHHHHhhhc----CCceeEEeeeccccCCCCccchhhhHHHHhcCCCCCCCcEEEeeecCCchhHHHHHHHHHHH
Q 037028 225 GHFVANASILEAFE----GESLVHVVDLGMTLGLPHGRQWHSLMQSLVNRSGKVPKRLKITGVGNCSERLGEIGDELKRY 300 (503)
Q Consensus 225 ahftANqAILEA~~----g~~~VHIVDfgi~~G~~~G~QWpsLiqaLA~R~ggpP~~LRITgI~~~~~~l~~tg~rL~~f 300 (503)
+++++-..||+.+. +-+--+|+|||-|-| .| =|.. ...-+ ....+|.|+.+. .+.+++++|.+-
T Consensus 13 ~~YA~~~~vl~El~~r~p~f~P~~vLD~GsGpG--ta-~wAa----~~~~~----~~~~~~~vd~s~-~~~~l~~~l~~~ 80 (274)
T PF09243_consen 13 ATYAAVYRVLSELRKRLPDFRPRSVLDFGSGPG--TA-LWAA----REVWP----SLKEYTCVDRSP-EMLELAKRLLRA 80 (274)
T ss_pred HHHHHHHHHHHHHHHhCcCCCCceEEEecCChH--HH-HHHH----HHHhc----CceeeeeecCCH-HHHHHHHHHHhc
Confidence 45566666666665 335569999997644 12 2321 11111 257899999765 444677777543
Q ss_pred HhhCCCcEEEeeecccccccCcccccccCCcEEEEEeccccccccccccchHHHHHHHH-HhcCCcEEEEEeecCCCCCC
Q 037028 301 ADGLKLNFEFLAVEKSLETLQAKDINVEDGEVLVMNSILELHCVVKESRGALNSVLQRL-HQLSPKVVMLVEQDSSHNGP 379 (503)
Q Consensus 301 A~~lgipFeF~~v~~~le~l~~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~I-r~L~PkvvvlvE~ea~~ns~ 379 (503)
.....- .+.. ..+..+...+.+.+-|++ .+.|-.|.+ ..+..+++.+ ..++| ++|+||+..-. +-
T Consensus 81 ~~~~~~-~~~~------~~~~~~~~~~~~~DLvi~--s~~L~EL~~---~~r~~lv~~LW~~~~~-~LVlVEpGt~~-Gf 146 (274)
T PF09243_consen 81 GPNNRN-AEWR------RVLYRDFLPFPPDDLVIA--SYVLNELPS---AARAELVRSLWNKTAP-VLVLVEPGTPA-GF 146 (274)
T ss_pred cccccc-chhh------hhhhcccccCCCCcEEEE--ehhhhcCCc---hHHHHHHHHHHHhccC-cEEEEcCCChH-HH
Confidence 322111 0011 111111122223333333 233334433 3456677777 44566 88888876543 33
Q ss_pred chHHHHHHHH
Q 037028 380 FFLGRFMEAL 389 (503)
Q Consensus 380 ~F~~RF~eAL 389 (503)
..+.+.++.|
T Consensus 147 ~~i~~aR~~l 156 (274)
T PF09243_consen 147 RRIAEARDQL 156 (274)
T ss_pred HHHHHHHHHH
Confidence 4555555555
No 38
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=68.82 E-value=52 Score=31.10 Aligned_cols=22 Identities=0% Similarity=0.018 Sum_probs=16.5
Q ss_pred ccchhhHHHHHhcCCceeecCC
Q 037028 437 HERVDQWRRRMSRAGFQSVPIK 458 (503)
Q Consensus 437 hE~~~~Wr~rm~~aGF~~~~ls 458 (503)
.-+.+.+.+.++.+||+.+...
T Consensus 145 ~~s~~~~~~ll~~~Gf~v~~~~ 166 (194)
T TIGR02081 145 FCTIADFEDLCGELNLRILDRA 166 (194)
T ss_pred cCcHHHHHHHHHHCCCEEEEEE
Confidence 4466778888999999887653
No 39
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=67.75 E-value=40 Score=31.24 Aligned_cols=110 Identities=14% Similarity=0.186 Sum_probs=59.0
Q ss_pred HHHHhhhcCCceeEEeeeccccCCCCccchhhhHHHHhcCCCCCCCcEEEeeecCCchhHHHHHHHHHHHHhhCCCcEEE
Q 037028 231 ASILEAFEGESLVHVVDLGMTLGLPHGRQWHSLMQSLVNRSGKVPKRLKITGVGNCSERLGEIGDELKRYADGLKLNFEF 310 (503)
Q Consensus 231 qAILEA~~g~~~VHIVDfgi~~G~~~G~QWpsLiqaLA~R~ggpP~~LRITgI~~~~~~l~~tg~rL~~fA~~lgipFeF 310 (503)
+.|++.+.-...=+|+|+|.|.| .|...|+.+ + -++|+|+.+...++.+.+++.. .+ .++
T Consensus 3 ~~i~~~~~~~~~~~vLEiG~G~G--------~lt~~l~~~-~-----~~v~~vE~~~~~~~~~~~~~~~----~~-~v~- 62 (169)
T smart00650 3 DKIVRAANLRPGDTVLEIGPGKG--------ALTEELLER-A-----ARVTAIEIDPRLAPRLREKFAA----AD-NLT- 62 (169)
T ss_pred HHHHHhcCCCCcCEEEEECCCcc--------HHHHHHHhc-C-----CeEEEEECCHHHHHHHHHHhcc----CC-CEE-
Confidence 34666665344448999997533 466667776 2 3799999887666666555432 11 233
Q ss_pred eeecccccccCcccccccCCcEEEEEeccccccccccccchHHHHHHHHHh--cCCcEEEEEeec
Q 037028 311 LAVEKSLETLQAKDINVEDGEVLVMNSILELHCVVKESRGALNSVLQRLHQ--LSPKVVMLVEQD 373 (503)
Q Consensus 311 ~~v~~~le~l~~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~Ir~--L~PkvvvlvE~e 373 (503)
.+..+..++.... ..-..++-|..+.+ . . +.+.+.++. +.+..+++++.|
T Consensus 63 -ii~~D~~~~~~~~---~~~d~vi~n~Py~~---~---~---~~i~~~l~~~~~~~~~~l~~q~e 114 (169)
T smart00650 63 -VIHGDALKFDLPK---LQPYKVVGNLPYNI---S---T---PILFKLLEEPPAFRDAVLMVQKE 114 (169)
T ss_pred -EEECchhcCCccc---cCCCEEEECCCccc---H---H---HHHHHHHhcCCCcceEEEEEEHH
Confidence 3334444433221 11245555655422 1 1 223333333 346777787776
No 40
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=66.63 E-value=70 Score=31.12 Aligned_cols=106 Identities=15% Similarity=0.152 Sum_probs=60.1
Q ss_pred eEEeeeccccCCCCccchhhhHHHHhcCCCCCCCcEEEeeecCCchhHHHHHHHHHHHHhhCCCc-EEEeeecccccccC
Q 037028 243 VHVVDLGMTLGLPHGRQWHSLMQSLVNRSGKVPKRLKITGVGNCSERLGEIGDELKRYADGLKLN-FEFLAVEKSLETLQ 321 (503)
Q Consensus 243 VHIVDfgi~~G~~~G~QWpsLiqaLA~R~ggpP~~LRITgI~~~~~~l~~tg~rL~~fA~~lgip-FeF~~v~~~le~l~ 321 (503)
-.|+|++-|.| .--+.+|+.. .-++|+|+...+.++.+.+.+.. +|+. .+| +..++.+.-
T Consensus 55 ~~vLDl~~GsG-------~l~l~~lsr~------a~~V~~vE~~~~a~~~a~~Nl~~----~~~~~v~~--~~~D~~~~l 115 (199)
T PRK10909 55 ARCLDCFAGSG-------ALGLEALSRY------AAGATLLEMDRAVAQQLIKNLAT----LKAGNARV--VNTNALSFL 115 (199)
T ss_pred CEEEEcCCCcc-------HHHHHHHHcC------CCEEEEEECCHHHHHHHHHHHHH----hCCCcEEE--EEchHHHHH
Confidence 36899997544 2233455532 14899999876666655555433 3442 333 322322211
Q ss_pred cccccccCCcEEEEEeccccccccccccchHHHHHHHHHh---cCCcEEEEEeecCCCC
Q 037028 322 AKDINVEDGEVLVMNSILELHCVVKESRGALNSVLQRLHQ---LSPKVVMLVEQDSSHN 377 (503)
Q Consensus 322 ~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~Ir~---L~PkvvvlvE~ea~~n 377 (503)
+. . ..+=+.|++|=.|. .+..+.++..|.. +.|+-++++|.....+
T Consensus 116 ~~-~-~~~fDlV~~DPPy~--------~g~~~~~l~~l~~~~~l~~~~iv~ve~~~~~~ 164 (199)
T PRK10909 116 AQ-P-GTPHNVVFVDPPFR--------KGLLEETINLLEDNGWLADEALIYVESEVENG 164 (199)
T ss_pred hh-c-CCCceEEEECCCCC--------CChHHHHHHHHHHCCCcCCCcEEEEEecCCCC
Confidence 10 0 11236777777652 1234567788877 6999999999876543
No 41
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=66.60 E-value=95 Score=30.30 Aligned_cols=111 Identities=20% Similarity=0.252 Sum_probs=65.8
Q ss_pred HHHHhhhcCCceeEEeeeccccCCCCccchhhhHHHHhcCCCCCCCcEEEeeecCCchhHHHHHHHHHHHHhhCCCcEEE
Q 037028 231 ASILEAFEGESLVHVVDLGMTLGLPHGRQWHSLMQSLVNRSGKVPKRLKITGVGNCSERLGEIGDELKRYADGLKLNFEF 310 (503)
Q Consensus 231 qAILEA~~g~~~VHIVDfgi~~G~~~G~QWpsLiqaLA~R~ggpP~~LRITgI~~~~~~l~~tg~rL~~fA~~lgipFeF 310 (503)
..+++|++--+.--++|+|-|.| . -+ --||++ -..+|+|+.+...+ ++|.+.|+.-+++.+.
T Consensus 20 s~v~~a~~~~~~g~~LDlgcG~G----R--Na--lyLA~~------G~~VtAvD~s~~al----~~l~~~a~~~~l~i~~ 81 (192)
T PF03848_consen 20 SEVLEAVPLLKPGKALDLGCGEG----R--NA--LYLASQ------GFDVTAVDISPVAL----EKLQRLAEEEGLDIRT 81 (192)
T ss_dssp HHHHHHCTTS-SSEEEEES-TTS----H--HH--HHHHHT------T-EEEEEESSHHHH----HHHHHHHHHTT-TEEE
T ss_pred HHHHHHHhhcCCCcEEEcCCCCc----H--HH--HHHHHC------CCeEEEEECCHHHH----HHHHHHHhhcCceeEE
Confidence 45677776666678999997654 1 11 126664 38899999876555 4567788999999766
Q ss_pred eeecccccccCcccccccCCcEEEEEeccccccccccccchHHHHHHHHH-hcCCcEEEEE
Q 037028 311 LAVEKSLETLQAKDINVEDGEVLVMNSILELHCVVKESRGALNSVLQRLH-QLSPKVVMLV 370 (503)
Q Consensus 311 ~~v~~~le~l~~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~Ir-~L~Pkvvvlv 370 (503)
... ++++... +++.=+|.+...+++|..+ .++.+++.++ .++|..+.+.
T Consensus 82 ~~~--Dl~~~~~------~~~yD~I~st~v~~fL~~~---~~~~i~~~m~~~~~pGG~~li 131 (192)
T PF03848_consen 82 RVA--DLNDFDF------PEEYDFIVSTVVFMFLQRE---LRPQIIENMKAATKPGGYNLI 131 (192)
T ss_dssp EE---BGCCBS-------TTTEEEEEEESSGGGS-GG---GHHHHHHHHHHTEEEEEEEEE
T ss_pred EEe--cchhccc------cCCcCEEEEEEEeccCCHH---HHHHHHHHHHhhcCCcEEEEE
Confidence 643 3433322 2333355566666777653 4567777775 5799744443
No 42
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=65.69 E-value=1.8 Score=43.80 Aligned_cols=112 Identities=17% Similarity=0.253 Sum_probs=63.6
Q ss_pred CceeEEeeeccccCCCCccchhhhHHHHhc--CCCCCCCcEEEeeecCCchhHHHHHHHHHHHHhhCCCcEEEeee-ccc
Q 037028 240 ESLVHVVDLGMTLGLPHGRQWHSLMQSLVN--RSGKVPKRLKITGVGNCSERLGEIGDELKRYADGLKLNFEFLAV-EKS 316 (503)
Q Consensus 240 ~~~VHIVDfgi~~G~~~G~QWpsLiqaLA~--R~ggpP~~LRITgI~~~~~~l~~tg~rL~~fA~~lgipFeF~~v-~~~ 316 (503)
.+.|||||+. -.|+-|-.|+.- +-..-| =+|-.|+.. ....+-+.+||+..|.++-.+-. -..
T Consensus 35 RngihIIDL~--------kT~~~l~~A~~~v~~~~~~~--g~ILfVgTK----~~a~~~V~~~A~r~g~~yV~~RwLgG~ 100 (252)
T COG0052 35 RNGIHIIDLQ--------KTLERLREAYKFLRRIAANG--GKILFVGTK----KQAQEPVKEFAERTGAYYVNGRWLGGM 100 (252)
T ss_pred cCCcEEEEHH--------HHHHHHHHHHHHHHHHHcCC--CEEEEEech----HHHHHHHHHHHHHhCCceecCcccCcc
Confidence 4799999998 578888776542 111112 245555533 56677889999999998766532 122
Q ss_pred ccccCc---c--ccc------------ccCCcEEEEEeccccccccccccchHHHHHHHHHhcC--CcEEEEEeecCC
Q 037028 317 LETLQA---K--DIN------------VEDGEVLVMNSILELHCVVKESRGALNSVLQRLHQLS--PKVVMLVEQDSS 375 (503)
Q Consensus 317 le~l~~---~--~l~------------~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~Ir~L~--PkvvvlvE~ea~ 375 (503)
|.+.+. + .|+ +...|++- | ......++.+|.-||.|+ |++++++++..+
T Consensus 101 LTN~~ti~~si~rl~~lE~~~~~~~~~~tKkE~l~------l----~re~~kL~k~lgGIk~m~~~Pd~l~ViDp~~e 168 (252)
T COG0052 101 LTNFKTIRKSIKRLKELEKMEEDGFDGLTKKEALM------L----TRELEKLEKSLGGIKDMKGLPDVLFVIDPRKE 168 (252)
T ss_pred ccCchhHHHHHHHHHHHHHHhhcccccccHHHHHH------H----HHHHHHHHHhhcchhhccCCCCEEEEeCCcHh
Confidence 222221 1 010 01122211 0 111234667888888775 888888886543
No 43
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=65.65 E-value=1.3e+02 Score=29.03 Aligned_cols=100 Identities=18% Similarity=0.194 Sum_probs=55.3
Q ss_pred EEeeeccccCCCCccchhhhHHHHhcCCCCCCCcEEEeeecCCchhHHHHHHHHHHHHhhCCCcEEEeeecccccccCcc
Q 037028 244 HVVDLGMTLGLPHGRQWHSLMQSLVNRSGKVPKRLKITGVGNCSERLGEIGDELKRYADGLKLNFEFLAVEKSLETLQAK 323 (503)
Q Consensus 244 HIVDfgi~~G~~~G~QWpsLiqaLA~R~ggpP~~LRITgI~~~~~~l~~tg~rL~~fA~~lgipFeF~~v~~~le~l~~~ 323 (503)
.|+|+|.| .|.. +..|+.+. | ..++|||+.+.+.++.+.+++. ++. |. ..++.+ +
T Consensus 46 ~VLDiGCG----~G~~----~~~L~~~~---~-~~~v~giDiS~~~l~~A~~~~~------~~~--~~--~~d~~~--~- 100 (204)
T TIGR03587 46 SILELGAN----IGMN----LAALKRLL---P-FKHIYGVEINEYAVEKAKAYLP------NIN--II--QGSLFD--P- 100 (204)
T ss_pred cEEEEecC----CCHH----HHHHHHhC---C-CCeEEEEECCHHHHHHHHhhCC------CCc--EE--EeeccC--C-
Confidence 48999975 4433 33344331 2 3689999988777776654421 222 22 112211 1
Q ss_pred cccccCCcEEEEEeccccccccccccchHHHHHHHHHhcCCcEEEEEeecC
Q 037028 324 DINVEDGEVLVMNSILELHCVVKESRGALNSVLQRLHQLSPKVVMLVEQDS 374 (503)
Q Consensus 324 ~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~Ir~L~PkvvvlvE~ea 374 (503)
..++..=+|-+...|||+.. ..+..+++.+.+..=+.++++|...
T Consensus 101 ---~~~~sfD~V~~~~vL~hl~p---~~~~~~l~el~r~~~~~v~i~e~~~ 145 (204)
T TIGR03587 101 ---FKDNFFDLVLTKGVLIHINP---DNLPTAYRELYRCSNRYILIAEYYN 145 (204)
T ss_pred ---CCCCCEEEEEECChhhhCCH---HHHHHHHHHHHhhcCcEEEEEEeeC
Confidence 12222222334555688742 3456777777777777888888754
No 44
>PRK05785 hypothetical protein; Provisional
Probab=62.69 E-value=1.4e+02 Score=29.26 Aligned_cols=94 Identities=17% Similarity=0.134 Sum_probs=50.5
Q ss_pred eeEEeeeccccCCCCccchhhhHHHHhcCCCCCCCcEEEeeecCCchhHHHHHHHHHHHHhhCCCcEEEeeecccccccC
Q 037028 242 LVHVVDLGMTLGLPHGRQWHSLMQSLVNRSGKVPKRLKITGVGNCSERLGEIGDELKRYADGLKLNFEFLAVEKSLETLQ 321 (503)
Q Consensus 242 ~VHIVDfgi~~G~~~G~QWpsLiqaLA~R~ggpP~~LRITgI~~~~~~l~~tg~rL~~fA~~lgipFeF~~v~~~le~l~ 321 (503)
.-.|+|+|.| .|. +...|+.+.+ .++|||+.+.+.++...++ .+ + +..+.+++
T Consensus 52 ~~~VLDlGcG----tG~----~~~~l~~~~~-----~~v~gvD~S~~Ml~~a~~~---------~~--~--~~~d~~~l- 104 (226)
T PRK05785 52 PKKVLDVAAG----KGE----LSYHFKKVFK-----YYVVALDYAENMLKMNLVA---------DD--K--VVGSFEAL- 104 (226)
T ss_pred CCeEEEEcCC----CCH----HHHHHHHhcC-----CEEEEECCCHHHHHHHHhc---------cc--e--EEechhhC-
Confidence 3479999974 442 3344555431 4899999887666654332 11 1 22233333
Q ss_pred cccccccCCcEEEEEeccccccccccccchHHHHHHHH-HhcCCcEEEEEee
Q 037028 322 AKDINVEDGEVLVMNSILELHCVVKESRGALNSVLQRL-HQLSPKVVMLVEQ 372 (503)
Q Consensus 322 ~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~I-r~L~PkvvvlvE~ 372 (503)
...++..=+|-+.+.|||+.+ .+.+|+.+ |-|+|.++ ++|-
T Consensus 105 ----p~~d~sfD~v~~~~~l~~~~d-----~~~~l~e~~RvLkp~~~-ile~ 146 (226)
T PRK05785 105 ----PFRDKSFDVVMSSFALHASDN-----IEKVIAEFTRVSRKQVG-FIAM 146 (226)
T ss_pred ----CCCCCCEEEEEecChhhccCC-----HHHHHHHHHHHhcCceE-EEEe
Confidence 233443444555667888654 23445444 56678543 4443
No 45
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=62.03 E-value=1e+02 Score=30.00 Aligned_cols=111 Identities=22% Similarity=0.248 Sum_probs=57.0
Q ss_pred HHHHhhhcCCceeEEeeeccccCCCCccchhhhHHHHhcCCCCCCCcEEEeeecCCchhHHHHHHHHHHHHhhCCCcEEE
Q 037028 231 ASILEAFEGESLVHVVDLGMTLGLPHGRQWHSLMQSLVNRSGKVPKRLKITGVGNCSERLGEIGDELKRYADGLKLNFEF 310 (503)
Q Consensus 231 qAILEA~~g~~~VHIVDfgi~~G~~~G~QWpsLiqaLA~R~ggpP~~LRITgI~~~~~~l~~tg~rL~~fA~~lgipFeF 310 (503)
..++++..=...-+|||+|-+ .| .+..+|+.+. | .||+|..+.|. .++.+.+ .=..+|
T Consensus 90 ~~~~~~~d~~~~~~vvDvGGG----~G----~~~~~l~~~~---P-~l~~~v~Dlp~-v~~~~~~---------~~rv~~ 147 (241)
T PF00891_consen 90 DILLEAFDFSGFKTVVDVGGG----SG----HFAIALARAY---P-NLRATVFDLPE-VIEQAKE---------ADRVEF 147 (241)
T ss_dssp HHHHHHSTTTTSSEEEEET-T----TS----HHHHHHHHHS---T-TSEEEEEE-HH-HHCCHHH---------TTTEEE
T ss_pred hhhhccccccCccEEEeccCc----ch----HHHHHHHHHC---C-CCcceeeccHh-hhhcccc---------cccccc
Confidence 456666665556689999964 44 3334444442 4 69999998762 1211111 223444
Q ss_pred eeecccccccCcccccccCCcEEEEEeccccccccccccchHHHHHHHH-HhcCCc---EEEEEeecCCC
Q 037028 311 LAVEKSLETLQAKDINVEDGEVLVMNSILELHCVVKESRGALNSVLQRL-HQLSPK---VVMLVEQDSSH 376 (503)
Q Consensus 311 ~~v~~~le~l~~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~I-r~L~Pk---vvvlvE~ea~~ 376 (503)
.+- ++- +.+.. .+ +|-+..-||+..++. ...+|+.+ +.|.|. .++++|.=.+.
T Consensus 148 ~~g--d~f----~~~P~--~D--~~~l~~vLh~~~d~~---~~~iL~~~~~al~pg~~g~llI~e~~~~~ 204 (241)
T PF00891_consen 148 VPG--DFF----DPLPV--AD--VYLLRHVLHDWSDED---CVKILRNAAAALKPGKDGRLLIIEMVLPD 204 (241)
T ss_dssp EES---TT----TCCSS--ES--EEEEESSGGGS-HHH---HHHHHHHHHHHSEECTTEEEEEEEEEECS
T ss_pred ccc--cHH----hhhcc--cc--ceeeehhhhhcchHH---HHHHHHHHHHHhCCCCCCeEEEEeeccCC
Confidence 331 211 11211 23 333344567776642 34677766 578876 67777765443
No 46
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=61.99 E-value=1.1e+02 Score=32.23 Aligned_cols=139 Identities=17% Similarity=0.144 Sum_probs=81.6
Q ss_pred eEEeeeccccCCCCccchhhhHHHHhcCCCCCCCcEEEeeecCCchhHHHHHHHHHHHHhhCCCc-EEEeeecccccc--
Q 037028 243 VHVVDLGMTLGLPHGRQWHSLMQSLVNRSGKVPKRLKITGVGNCSERLGEIGDELKRYADGLKLN-FEFLAVEKSLET-- 319 (503)
Q Consensus 243 VHIVDfgi~~G~~~G~QWpsLiqaLA~R~ggpP~~LRITgI~~~~~~l~~tg~rL~~fA~~lgip-FeF~~v~~~le~-- 319 (503)
..|||||-| .|..=..||++|... +.| .+-.+|+-+.+.|+++.++|. .-..| +++.+|..+.++
T Consensus 78 ~~lIELGsG----~~~Kt~~LL~aL~~~--~~~--~~Y~plDIS~~~L~~a~~~L~----~~~~p~l~v~~l~gdy~~~l 145 (319)
T TIGR03439 78 SMLVELGSG----NLRKVGILLEALERQ--KKS--VDYYALDVSRSELQRTLAELP----LGNFSHVRCAGLLGTYDDGL 145 (319)
T ss_pred CEEEEECCC----chHHHHHHHHHHHhc--CCC--ceEEEEECCHHHHHHHHHhhh----hccCCCeEEEEEEecHHHHH
Confidence 479999974 678889999999732 233 788999999999999999996 12245 777777544322
Q ss_pred --cCcccccccCCcEEEEEeccccccccccccchHHHHHHHHHh--cCCcEEEEEeecCC---------CCCC-ch-HHH
Q 037028 320 --LQAKDINVEDGEVLVMNSILELHCVVKESRGALNSVLQRLHQ--LSPKVVMLVEQDSS---------HNGP-FF-LGR 384 (503)
Q Consensus 320 --l~~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~Ir~--L~PkvvvlvE~ea~---------~ns~-~F-~~R 384 (503)
+.... ....-.++.-.-..+.++. +.....||+.+++ |+|.-..++=-|.. +|.+ .. ...
T Consensus 146 ~~l~~~~--~~~~~r~~~flGSsiGNf~---~~ea~~fL~~~~~~~l~~~d~lLiG~D~~k~~~~l~~AY~d~~gvTa~F 220 (319)
T TIGR03439 146 AWLKRPE--NRSRPTTILWLGSSIGNFS---RPEAAAFLAGFLATALSPSDSFLIGLDGCKDPDKVLRAYNDPGGVTRRF 220 (319)
T ss_pred hhccccc--ccCCccEEEEeCccccCCC---HHHHHHHHHHHHHhhCCCCCEEEEecCCCCCHHHHHHHhcCCcchhHHH
Confidence 21111 1111223332222344443 2345689999987 89965444433322 2322 22 233
Q ss_pred HHHHHHHHHHHHhh
Q 037028 385 FMEALHYYSAIFDS 398 (503)
Q Consensus 385 F~eAL~yYsAlFDS 398 (503)
..+.|++--..+++
T Consensus 221 nlN~L~~~Nr~Lg~ 234 (319)
T TIGR03439 221 VLNGLVHANEILGS 234 (319)
T ss_pred HHHHHHHHHHHhCc
Confidence 45566666666554
No 47
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=59.46 E-value=91 Score=33.40 Aligned_cols=108 Identities=17% Similarity=0.243 Sum_probs=58.2
Q ss_pred HHHHhhhcCCceeEEeeeccccCCCCccchhhhHHHHhcCCCCCCCcEEEeeecCCchhHHHHHHHHHHHHhhCCCcEEE
Q 037028 231 ASILEAFEGESLVHVVDLGMTLGLPHGRQWHSLMQSLVNRSGKVPKRLKITGVGNCSERLGEIGDELKRYADGLKLNFEF 310 (503)
Q Consensus 231 qAILEA~~g~~~VHIVDfgi~~G~~~G~QWpsLiqaLA~R~ggpP~~LRITgI~~~~~~l~~tg~rL~~fA~~lgipFeF 310 (503)
..|++.+.-...-+|+|+|.| |-.+...++.+.+ .++|||+.+.+.++.+.++. + +++++|
T Consensus 157 ~~l~~~l~l~~g~rVLDIGcG--------~G~~a~~la~~~g-----~~V~giDlS~~~l~~A~~~~----~--~l~v~~ 217 (383)
T PRK11705 157 DLICRKLQLKPGMRVLDIGCG--------WGGLARYAAEHYG-----VSVVGVTISAEQQKLAQERC----A--GLPVEI 217 (383)
T ss_pred HHHHHHhCCCCCCEEEEeCCC--------ccHHHHHHHHHCC-----CEEEEEeCCHHHHHHHHHHh----c--cCeEEE
Confidence 445555543444589999964 3345556666542 58999998877776666554 2 333444
Q ss_pred eeecccccccCcccccccCCcEEEEEeccccccccccccchHHHHHHHH-HhcCCcEEEEE
Q 037028 311 LAVEKSLETLQAKDINVEDGEVLVMNSILELHCVVKESRGALNSVLQRL-HQLSPKVVMLV 370 (503)
Q Consensus 311 ~~v~~~le~l~~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~I-r~L~Pkvvvlv 370 (503)
.. .+..++. ..=+.|+- ...++|+..+ ..+.+++.+ +-|+|.-.+++
T Consensus 218 ~~--~D~~~l~------~~fD~Ivs--~~~~ehvg~~---~~~~~l~~i~r~LkpGG~lvl 265 (383)
T PRK11705 218 RL--QDYRDLN------GQFDRIVS--VGMFEHVGPK---NYRTYFEVVRRCLKPDGLFLL 265 (383)
T ss_pred EE--CchhhcC------CCCCEEEE--eCchhhCChH---HHHHHHHHHHHHcCCCcEEEE
Confidence 32 2222221 11133332 2334676432 234566655 56899755544
No 48
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=58.78 E-value=65 Score=33.93 Aligned_cols=119 Identities=18% Similarity=0.247 Sum_probs=65.5
Q ss_pred ceeEEeeeccccCCCCccchhhhHHHHhcCCCCCCCcEEEeeecCCchhHHHHHHHHHHHHhhC---CCcEEEee----e
Q 037028 241 SLVHVVDLGMTLGLPHGRQWHSLMQSLVNRSGKVPKRLKITGVGNCSERLGEIGDELKRYADGL---KLNFEFLA----V 313 (503)
Q Consensus 241 ~~VHIVDfgi~~G~~~G~QWpsLiqaLA~R~ggpP~~LRITgI~~~~~~l~~tg~rL~~fA~~l---gipFeF~~----v 313 (503)
...+|+|++.|=| -.|.+=... .+ =++.||+.....++++.+|..+.-+.. ...+.|.. -
T Consensus 62 ~~~~VLDl~CGkG-------GDL~Kw~~~----~i--~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~ 128 (331)
T PF03291_consen 62 PGLTVLDLCCGKG-------GDLQKWQKA----KI--KHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAA 128 (331)
T ss_dssp TT-EEEEET-TTT-------TTHHHHHHT----T---SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEES
T ss_pred CCCeEEEecCCCc-------hhHHHHHhc----CC--CEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheecc
Confidence 6789999998643 223332222 22 578899999999999999986655432 23333432 2
Q ss_pred cccccccCcccccccCCcEEEEEeccccccccccccchHHHHHHHH-HhcCCcEEEE-EeecC
Q 037028 314 EKSLETLQAKDINVEDGEVLVMNSILELHCVVKESRGALNSVLQRL-HQLSPKVVML-VEQDS 374 (503)
Q Consensus 314 ~~~le~l~~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~I-r~L~Pkvvvl-vE~ea 374 (503)
.+..+.|. +.+.-..+..=+|.|+|.||..... ......+|+.| ..|+|.-+.+ +-.|+
T Consensus 129 D~f~~~l~-~~~~~~~~~FDvVScQFalHY~Fes-e~~ar~~l~Nvs~~Lk~GG~FIgT~~d~ 189 (331)
T PF03291_consen 129 DCFSESLR-EKLPPRSRKFDVVSCQFALHYAFES-EEKARQFLKNVSSLLKPGGYFIGTTPDS 189 (331)
T ss_dssp TTCCSHHH-CTSSSTTS-EEEEEEES-GGGGGSS-HHHHHHHHHHHHHTEEEEEEEEEEEE-H
T ss_pred ccccchhh-hhccccCCCcceeehHHHHHHhcCC-HHHHHHHHHHHHHhcCCCCEEEEEecCH
Confidence 11111111 1122223467799999999998853 23455666666 6789974443 34443
No 49
>PLN02244 tocopherol O-methyltransferase
Probab=58.69 E-value=1.4e+02 Score=31.15 Aligned_cols=102 Identities=17% Similarity=0.224 Sum_probs=55.4
Q ss_pred ceeEEeeeccccCCCCccchhhhHHHHhcCCCCCCCcEEEeeecCCchhHHHHHHHHHHHHhhCCC--cEEEeeeccccc
Q 037028 241 SLVHVVDLGMTLGLPHGRQWHSLMQSLVNRSGKVPKRLKITGVGNCSERLGEIGDELKRYADGLKL--NFEFLAVEKSLE 318 (503)
Q Consensus 241 ~~VHIVDfgi~~G~~~G~QWpsLiqaLA~R~ggpP~~LRITgI~~~~~~l~~tg~rL~~fA~~lgi--pFeF~~v~~~le 318 (503)
+.-+|+|+|.|.| .+...|+.+.+ .++|||+.+...++...++ ++..|+ ..+|.. .+..
T Consensus 118 ~~~~VLDiGCG~G--------~~~~~La~~~g-----~~v~gvD~s~~~i~~a~~~----~~~~g~~~~v~~~~--~D~~ 178 (340)
T PLN02244 118 RPKRIVDVGCGIG--------GSSRYLARKYG-----ANVKGITLSPVQAARANAL----AAAQGLSDKVSFQV--ADAL 178 (340)
T ss_pred CCCeEEEecCCCC--------HHHHHHHHhcC-----CEEEEEECCHHHHHHHHHH----HHhcCCCCceEEEE--cCcc
Confidence 3447999996533 24556676542 4899999876555444332 344454 355543 2232
Q ss_pred ccCcccccccCCcEEEEEeccccccccccccchHHHHHH-HHHhcCCcE-EEEEe
Q 037028 319 TLQAKDINVEDGEVLVMNSILELHCVVKESRGALNSVLQ-RLHQLSPKV-VMLVE 371 (503)
Q Consensus 319 ~l~~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~-~Ir~L~Pkv-vvlvE 371 (503)
++. ..++..=+|-+...+||+.+. ..+|+ ..|-|+|.- +++++
T Consensus 179 ~~~-----~~~~~FD~V~s~~~~~h~~d~-----~~~l~e~~rvLkpGG~lvi~~ 223 (340)
T PLN02244 179 NQP-----FEDGQFDLVWSMESGEHMPDK-----RKFVQELARVAAPGGRIIIVT 223 (340)
T ss_pred cCC-----CCCCCccEEEECCchhccCCH-----HHHHHHHHHHcCCCcEEEEEE
Confidence 222 223333344456677888642 34554 457789963 34433
No 50
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=57.25 E-value=29 Score=31.36 Aligned_cols=50 Identities=24% Similarity=0.402 Sum_probs=30.0
Q ss_pred hcCCceeEEeeeccccCCCCccchhhhHHHHhcC--CCCCCCcEEEeeecCCchhHHHHHHH
Q 037028 237 FEGESLVHVVDLGMTLGLPHGRQWHSLMQSLVNR--SGKVPKRLKITGVGNCSERLGEIGDE 296 (503)
Q Consensus 237 ~~g~~~VHIVDfgi~~G~~~G~QWpsLiqaLA~R--~ggpP~~LRITgI~~~~~~l~~tg~r 296 (503)
-...+..+|||+|-|.| . |=+.|+.. ... | .++|++|+......+..-++
T Consensus 21 ~~~~~~~~vvD~GsG~G------y--Ls~~La~~l~~~~-~-~~~v~~iD~~~~~~~~a~~~ 72 (141)
T PF13679_consen 21 GESKRCITVVDLGSGKG------Y--LSRALAHLLCNSS-P-NLRVLGIDCNESLVESAQKR 72 (141)
T ss_pred hccCCCCEEEEeCCChh------H--HHHHHHHHHHhcC-C-CCeEEEEECCcHHHHHHHHH
Confidence 34578999999997533 2 33334431 112 3 59999999876554444333
No 51
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=54.54 E-value=1.1e+02 Score=30.33 Aligned_cols=101 Identities=24% Similarity=0.296 Sum_probs=51.4
Q ss_pred eEEeeeccccCCCCccchhhhHHHHhcCCCCCCCcEEEeeecCCchhHHHHHHHHHHHHhhCCCc-EEEeeecccccccC
Q 037028 243 VHVVDLGMTLGLPHGRQWHSLMQSLVNRSGKVPKRLKITGVGNCSERLGEIGDELKRYADGLKLN-FEFLAVEKSLETLQ 321 (503)
Q Consensus 243 VHIVDfgi~~G~~~G~QWpsLiqaLA~R~ggpP~~LRITgI~~~~~~l~~tg~rL~~fA~~lgip-FeF~~v~~~le~l~ 321 (503)
=+|+|+|.+- | .|..+ ++...+ | .-+||+|+.+...++.+.++. +..|++ .+|. ..+++++.
T Consensus 79 ~~VLDiG~G~----G-~~~~~---~a~~~g--~-~~~v~gvD~s~~~l~~A~~~~----~~~g~~~v~~~--~~d~~~l~ 141 (272)
T PRK11873 79 ETVLDLGSGG----G-FDCFL---AARRVG--P-TGKVIGVDMTPEMLAKARANA----RKAGYTNVEFR--LGEIEALP 141 (272)
T ss_pred CEEEEeCCCC----C-HHHHH---HHHHhC--C-CCEEEEECCCHHHHHHHHHHH----HHcCCCCEEEE--EcchhhCC
Confidence 3899999752 3 22221 222222 2 468999998876666655543 334442 3332 23444433
Q ss_pred cccccccCC--cEEEEEeccccccccccccchHHHHHHHHHhcCCcE-EEEEe
Q 037028 322 AKDINVEDG--EVLVMNSILELHCVVKESRGALNSVLQRLHQLSPKV-VMLVE 371 (503)
Q Consensus 322 ~~~l~~~~~--EaLaVN~~~~Lh~l~~es~~~~~~~L~~Ir~L~Pkv-vvlvE 371 (503)
..++ +.|+.|+.+ |+..+. ...+=...+-|+|.- +++++
T Consensus 142 -----~~~~~fD~Vi~~~v~--~~~~d~----~~~l~~~~r~LkpGG~l~i~~ 183 (272)
T PRK11873 142 -----VADNSVDVIISNCVI--NLSPDK----ERVFKEAFRVLKPGGRFAISD 183 (272)
T ss_pred -----CCCCceeEEEEcCcc--cCCCCH----HHHHHHHHHHcCCCcEEEEEE
Confidence 1222 355556654 554431 223444557788974 44434
No 52
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=51.38 E-value=2.3e+02 Score=27.20 Aligned_cols=97 Identities=19% Similarity=0.256 Sum_probs=54.5
Q ss_pred eeEEeeeccccCCCCccchhhhHHHHhcCCCCCCCcEEEeeecCCchhHHHHHHHHHHHHhhCCCc-EEEeeeccccccc
Q 037028 242 LVHVVDLGMTLGLPHGRQWHSLMQSLVNRSGKVPKRLKITGVGNCSERLGEIGDELKRYADGLKLN-FEFLAVEKSLETL 320 (503)
Q Consensus 242 ~VHIVDfgi~~G~~~G~QWpsLiqaLA~R~ggpP~~LRITgI~~~~~~l~~tg~rL~~fA~~lgip-FeF~~v~~~le~l 320 (503)
.-.|+|+|-+ ....+++=+. +. | ..++|+|+.+.+.++.+.++ ++..|++ ++|. ..+.+++
T Consensus 46 g~~VLDiGcG------tG~~al~la~--~~---~-~~~V~giD~s~~~l~~A~~~----~~~~~l~~i~~~--~~d~~~~ 107 (187)
T PRK00107 46 GERVLDVGSG------AGFPGIPLAI--AR---P-ELKVTLVDSLGKKIAFLREV----AAELGLKNVTVV--HGRAEEF 107 (187)
T ss_pred CCeEEEEcCC------CCHHHHHHHH--HC---C-CCeEEEEeCcHHHHHHHHHH----HHHcCCCCEEEE--eccHhhC
Confidence 3469999964 3344443322 21 2 36999999887666655544 3445654 4443 3344443
Q ss_pred CcccccccCCcEEEEEeccccccccccccchHHHHHHHH-HhcCCcEEEEEe
Q 037028 321 QAKDINVEDGEVLVMNSILELHCVVKESRGALNSVLQRL-HQLSPKVVMLVE 371 (503)
Q Consensus 321 ~~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~I-r~L~PkvvvlvE 371 (503)
.. -.+=+.++.|+. ...+.+++.+ +.|+|.-.+++.
T Consensus 108 ~~----~~~fDlV~~~~~-----------~~~~~~l~~~~~~LkpGG~lv~~ 144 (187)
T PRK00107 108 GQ----EEKFDVVTSRAV-----------ASLSDLVELCLPLLKPGGRFLAL 144 (187)
T ss_pred CC----CCCccEEEEccc-----------cCHHHHHHHHHHhcCCCeEEEEE
Confidence 32 123456666542 1234666654 789998666655
No 53
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=51.23 E-value=1.6e+02 Score=31.62 Aligned_cols=120 Identities=12% Similarity=0.134 Sum_probs=62.6
Q ss_pred HHhhhcCCceeEEeeeccccCCCCccchhhhHHHHhcCCCCCCCcEEEeeecCCchhHHHHHHHHHHHHhhCCCcEEEee
Q 037028 233 ILEAFEGESLVHVVDLGMTLGLPHGRQWHSLMQSLVNRSGKVPKRLKITGVGNCSERLGEIGDELKRYADGLKLNFEFLA 312 (503)
Q Consensus 233 ILEA~~g~~~VHIVDfgi~~G~~~G~QWpsLiqaLA~R~ggpP~~LRITgI~~~~~~l~~tg~rL~~fA~~lgipFeF~~ 312 (503)
+|+.+.....=+|+|+|.|.| . +--.|+.+. | ..+||+|+.+...++.+.+++......-.-.++|..
T Consensus 220 lL~~lp~~~~~~VLDLGCGtG----v----i~i~la~~~---P-~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~ 287 (378)
T PRK15001 220 FMQHLPENLEGEIVDLGCGNG----V----IGLTLLDKN---P-QAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMI 287 (378)
T ss_pred HHHhCCcccCCeEEEEecccc----H----HHHHHHHhC---C-CCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEE
Confidence 444443322227999997644 2 334555552 3 589999999877777777666433211111344432
Q ss_pred ecccccccCcccccccCCcEEEEEeccccccccccccchHHHHHH-HHHhcCCcEEEEEee
Q 037028 313 VEKSLETLQAKDINVEDGEVLVMNSILELHCVVKESRGALNSVLQ-RLHQLSPKVVMLVEQ 372 (503)
Q Consensus 313 v~~~le~l~~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~-~Ir~L~PkvvvlvE~ 372 (503)
- .-++.+.. ..=+.|+.|-.|...+-..+ .....+++ .-+-|+|.-.+.++.
T Consensus 288 ~-D~l~~~~~-----~~fDlIlsNPPfh~~~~~~~--~ia~~l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 288 N-NALSGVEP-----FRFNAVLCNPPFHQQHALTD--NVAWEMFHHARRCLKINGELYIVA 340 (378)
T ss_pred c-cccccCCC-----CCEEEEEECcCcccCccCCH--HHHHHHHHHHHHhcccCCEEEEEE
Confidence 1 11222211 12257777877743332221 12334444 446789986555553
No 54
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=49.59 E-value=1.2e+02 Score=28.68 Aligned_cols=100 Identities=23% Similarity=0.325 Sum_probs=52.3
Q ss_pred ceeEEeeeccccCCCCccchhhhHHHHhcCCCCCCCcEEEeeecCCchhHHHHHHHHHHHHhhCCCcEEEeeeccccccc
Q 037028 241 SLVHVVDLGMTLGLPHGRQWHSLMQSLVNRSGKVPKRLKITGVGNCSERLGEIGDELKRYADGLKLNFEFLAVEKSLETL 320 (503)
Q Consensus 241 ~~VHIVDfgi~~G~~~G~QWpsLiqaLA~R~ggpP~~LRITgI~~~~~~l~~tg~rL~~fA~~lgipFeF~~v~~~le~l 320 (503)
+..+|+|+|-| .|. +...|+.+ +| ..++|+|+.+...++.+.+++. . .++| +..+++++
T Consensus 34 ~~~~vLDlG~G----~G~----~~~~l~~~--~~--~~~~~~~D~~~~~~~~~~~~~~----~---~~~~--~~~d~~~~ 92 (240)
T TIGR02072 34 IPASVLDIGCG----TGY----LTRALLKR--FP--QAEFIALDISAGMLAQAKTKLS----E---NVQF--ICGDAEKL 92 (240)
T ss_pred CCCeEEEECCC----ccH----HHHHHHHh--CC--CCcEEEEeChHHHHHHHHHhcC----C---CCeE--EecchhhC
Confidence 34689999965 332 33344443 22 4789999987666655555443 1 2233 32334333
Q ss_pred CcccccccCCcEEEEEeccccccccccccchHHHHHHHH-HhcCCcEEEEEe
Q 037028 321 QAKDINVEDGEVLVMNSILELHCVVKESRGALNSVLQRL-HQLSPKVVMLVE 371 (503)
Q Consensus 321 ~~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~I-r~L~PkvvvlvE 371 (503)
.... ..=++|+ +...||++.+ ...+|..+ +.|+|.-+++..
T Consensus 93 ~~~~---~~fD~vi--~~~~l~~~~~-----~~~~l~~~~~~L~~~G~l~~~ 134 (240)
T TIGR02072 93 PLED---SSFDLIV--SNLALQWCDD-----LSQALSELARVLKPGGLLAFS 134 (240)
T ss_pred CCCC---CceeEEE--EhhhhhhccC-----HHHHHHHHHHHcCCCcEEEEE
Confidence 2110 1113333 4445677643 24566666 468997655553
No 55
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=48.51 E-value=85 Score=29.84 Aligned_cols=114 Identities=12% Similarity=0.093 Sum_probs=57.9
Q ss_pred eeEEeeeccccCCCCccchhhhHHHHhcCCCCCCCcEEEeeecCCchhHHHHHHHHHHHHhhCCCc-EEEeeeccccccc
Q 037028 242 LVHVVDLGMTLGLPHGRQWHSLMQSLVNRSGKVPKRLKITGVGNCSERLGEIGDELKRYADGLKLN-FEFLAVEKSLETL 320 (503)
Q Consensus 242 ~VHIVDfgi~~G~~~G~QWpsLiqaLA~R~ggpP~~LRITgI~~~~~~l~~tg~rL~~fA~~lgip-FeF~~v~~~le~l 320 (503)
.--|+|+|.|.| .++-.||.+. | ...++||+...+.++.+.+++. ..|+. .+| +..++.++
T Consensus 17 ~~~ilDiGcG~G--------~~~~~la~~~---p-~~~v~gvD~~~~~l~~a~~~~~----~~~l~ni~~--i~~d~~~~ 78 (194)
T TIGR00091 17 APLHLEIGCGKG--------RFLIDMAKQN---P-DKNFLGIEIHTPIVLAANNKAN----KLGLKNLHV--LCGDANEL 78 (194)
T ss_pred CceEEEeCCCcc--------HHHHHHHHhC---C-CCCEEEEEeeHHHHHHHHHHHH----HhCCCCEEE--EccCHHHH
Confidence 346999996533 4555666552 3 4789999988777766666553 33443 333 33344333
Q ss_pred CcccccccCCcEEEEEecccccccccc-ccchHHHHHHHH-HhcCCcEEEEEeec
Q 037028 321 QAKDINVEDGEVLVMNSILELHCVVKE-SRGALNSVLQRL-HQLSPKVVMLVEQD 373 (503)
Q Consensus 321 ~~~~l~~~~~EaLaVN~~~~Lh~l~~e-s~~~~~~~L~~I-r~L~PkvvvlvE~e 373 (503)
....+.-..=+.+++|+..-.+.-... .+-....+|+.+ +.|+|.-.+.+..|
T Consensus 79 ~~~~~~~~~~d~v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td 133 (194)
T TIGR00091 79 LDKFFPDGSLSKVFLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTD 133 (194)
T ss_pred HHhhCCCCceeEEEEECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeC
Confidence 211111011135666654321110000 000114677765 66899866655443
No 56
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=48.50 E-value=2.3e+02 Score=26.30 Aligned_cols=49 Identities=14% Similarity=0.159 Sum_probs=31.6
Q ss_pred EEeeeccccCCCCccchhhhHHHHhcCCCCCCCcEEEeeecCCchhHHHHHHHHHHHHhhCCCcEEE
Q 037028 244 HVVDLGMTLGLPHGRQWHSLMQSLVNRSGKVPKRLKITGVGNCSERLGEIGDELKRYADGLKLNFEF 310 (503)
Q Consensus 244 HIVDfgi~~G~~~G~QWpsLiqaLA~R~ggpP~~LRITgI~~~~~~l~~tg~rL~~fA~~lgipFeF 310 (503)
.|+|+|.+. | .+...++.+ ++ ++|+|+.+.+.++.+.+++. ..++..+|
T Consensus 22 ~vLdlG~G~----G----~~~~~l~~~--~~----~v~~vD~s~~~~~~a~~~~~----~~~~~~~~ 70 (179)
T TIGR00537 22 DVLEIGAGT----G----LVAIRLKGK--GK----CILTTDINPFAVKELRENAK----LNNVGLDV 70 (179)
T ss_pred eEEEeCCCh----h----HHHHHHHhc--CC----EEEEEECCHHHHHHHHHHHH----HcCCceEE
Confidence 499999754 3 244455554 22 89999988877777777664 33444444
No 57
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=48.32 E-value=56 Score=33.05 Aligned_cols=67 Identities=22% Similarity=0.354 Sum_probs=40.8
Q ss_pred Hhccchhhhh-HhhhHHHHh----hhcCCceeEEeeeccccCCCCccchhhhHHHHhcCCCCCCCcEEEeeecCCchhHH
Q 037028 217 EICPQIQFGH-FVANASILE----AFEGESLVHVVDLGMTLGLPHGRQWHSLMQSLVNRSGKVPKRLKITGVGNCSERLG 291 (503)
Q Consensus 217 e~~P~~kfah-ftANqAILE----A~~g~~~VHIVDfgi~~G~~~G~QWpsLiqaLA~R~ggpP~~LRITgI~~~~~~l~ 291 (503)
...|=-++++ |..|+.|++ .+.-...-+|+|+|-|.| .+...|+.+ + + ++|||+.+...++
T Consensus 13 ~~~~~k~~gq~fl~~~~i~~~i~~~l~~~~~~~VLEiG~G~G--------~lt~~L~~~--~-~---~v~avE~d~~~~~ 78 (272)
T PRK00274 13 GHRAKKSLGQNFLIDENILDKIVDAAGPQPGDNVLEIGPGLG--------ALTEPLLER--A-A---KVTAVEIDRDLAP 78 (272)
T ss_pred CCCCCcccCcCcCCCHHHHHHHHHhcCCCCcCeEEEeCCCcc--------HHHHHHHHh--C-C---cEEEEECCHHHHH
Confidence 3455555554 555655554 333345568999996533 566777776 2 2 7899998866665
Q ss_pred HHHHHH
Q 037028 292 EIGDEL 297 (503)
Q Consensus 292 ~tg~rL 297 (503)
.+.+++
T Consensus 79 ~~~~~~ 84 (272)
T PRK00274 79 ILAETF 84 (272)
T ss_pred HHHHhh
Confidence 554433
No 58
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=47.87 E-value=1.1e+02 Score=29.26 Aligned_cols=99 Identities=14% Similarity=0.187 Sum_probs=51.5
Q ss_pred EEeeeccccCCCCccchhhhHHHHhcCCCCCCCcEEEeeecCCchhHHHHHHHHHHHHhhCCCcEEEeeecccccccCcc
Q 037028 244 HVVDLGMTLGLPHGRQWHSLMQSLVNRSGKVPKRLKITGVGNCSERLGEIGDELKRYADGLKLNFEFLAVEKSLETLQAK 323 (503)
Q Consensus 244 HIVDfgi~~G~~~G~QWpsLiqaLA~R~ggpP~~LRITgI~~~~~~l~~tg~rL~~fA~~lgipFeF~~v~~~le~l~~~ 323 (503)
+|+|+|.+. -.+...++.+. | ..++|||+.+.+.++...+++ +..|+.-....+..+.+.....
T Consensus 2 ~vLDiGcG~--------G~~~~~la~~~---~-~~~v~gid~s~~~~~~a~~~~----~~~gl~~~i~~~~~d~~~~~~~ 65 (224)
T smart00828 2 RVLDFGCGY--------GSDLIDLAERH---P-HLQLHGYTISPEQAEVGRERI----RALGLQGRIRIFYRDSAKDPFP 65 (224)
T ss_pred eEEEECCCC--------CHHHHHHHHHC---C-CCEEEEEECCHHHHHHHHHHH----HhcCCCcceEEEecccccCCCC
Confidence 689998643 23455666543 2 378999998766666555554 3345543333222222211110
Q ss_pred cccccCCcEEEEEeccccccccccccchHHHHHHHH-HhcCCcEEEE
Q 037028 324 DINVEDGEVLVMNSILELHCVVKESRGALNSVLQRL-HQLSPKVVML 369 (503)
Q Consensus 324 ~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~I-r~L~Pkvvvl 369 (503)
..=+.++ +...+||+.+ ...+|+.+ +.|+|.-.++
T Consensus 66 ----~~fD~I~--~~~~l~~~~~-----~~~~l~~~~~~LkpgG~l~ 101 (224)
T smart00828 66 ----DTYDLVF--GFEVIHHIKD-----KMDLFSNISRHLKDGGHLV 101 (224)
T ss_pred ----CCCCEee--hHHHHHhCCC-----HHHHHHHHHHHcCCCCEEE
Confidence 1112333 3344577643 24666666 5689974443
No 59
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=47.20 E-value=2.3e+02 Score=27.18 Aligned_cols=56 Identities=11% Similarity=0.077 Sum_probs=33.2
Q ss_pred HHHhhhcCCceeEEeeeccccCCCCccchhhhHHHHhcCCCCCCCcEEEeeecCCchhHHHHHHHHH
Q 037028 232 SILEAFEGESLVHVVDLGMTLGLPHGRQWHSLMQSLVNRSGKVPKRLKITGVGNCSERLGEIGDELK 298 (503)
Q Consensus 232 AILEA~~g~~~VHIVDfgi~~G~~~G~QWpsLiqaLA~R~ggpP~~LRITgI~~~~~~l~~tg~rL~ 298 (503)
.+++.++-...-+|+|+|-| ..|.+ ..|+..-+ +. -++++|+...+.++.+.+++.
T Consensus 63 ~~~~~l~~~~~~~VLDiG~G------sG~~~--~~la~~~~-~~--g~V~~iD~~~~~~~~a~~~l~ 118 (205)
T PRK13944 63 MMCELIEPRPGMKILEVGTG------SGYQA--AVCAEAIE-RR--GKVYTVEIVKELAIYAAQNIE 118 (205)
T ss_pred HHHHhcCCCCCCEEEEECcC------ccHHH--HHHHHhcC-CC--CEEEEEeCCHHHHHHHHHHHH
Confidence 35566654445579999953 33433 22332221 22 479999988777776766664
No 60
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=46.52 E-value=2.4e+02 Score=29.38 Aligned_cols=112 Identities=18% Similarity=0.182 Sum_probs=53.4
Q ss_pred HHhhhcCCceeEEeeeccccCCCCccchhhhHHHHhcCCCCCCCcEEEeeecCCchhHHHHHHHHHHHHhhCCCcEEEee
Q 037028 233 ILEAFEGESLVHVVDLGMTLGLPHGRQWHSLMQSLVNRSGKVPKRLKITGVGNCSERLGEIGDELKRYADGLKLNFEFLA 312 (503)
Q Consensus 233 ILEA~~g~~~VHIVDfgi~~G~~~G~QWpsLiqaLA~R~ggpP~~LRITgI~~~~~~l~~tg~rL~~fA~~lgipFeF~~ 312 (503)
|++.+..-+.-+|+|+|.|.| .++..++.+ | | -+++||+++...+... +...+++.. +.+.+|..
T Consensus 114 l~~~l~~l~g~~VLDIGCG~G--------~~~~~la~~--g-~--~~V~GiD~S~~~l~q~-~a~~~~~~~-~~~i~~~~ 178 (322)
T PRK15068 114 VLPHLSPLKGRTVLDVGCGNG--------YHMWRMLGA--G-A--KLVVGIDPSQLFLCQF-EAVRKLLGN-DQRAHLLP 178 (322)
T ss_pred HHHhhCCCCCCEEEEeccCCc--------HHHHHHHHc--C-C--CEEEEEcCCHHHHHHH-HHHHHhcCC-CCCeEEEe
Confidence 344443222347999997543 222345544 2 2 2599999775444221 111222211 22344533
Q ss_pred ecccccccCcccccccCCcEEEEEeccccccccccccchHHHHHHHHHhcCCcEEEEEe
Q 037028 313 VEKSLETLQAKDINVEDGEVLVMNSILELHCVVKESRGALNSVLQRLHQLSPKVVMLVE 371 (503)
Q Consensus 313 v~~~le~l~~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~Ir~L~PkvvvlvE 371 (503)
..++++... ..=++| -|+..|||+.+ +.+.+-+.-+.|+|.-.++.+
T Consensus 179 --~d~e~lp~~----~~FD~V--~s~~vl~H~~d----p~~~L~~l~~~LkpGG~lvl~ 225 (322)
T PRK15068 179 --LGIEQLPAL----KAFDTV--FSMGVLYHRRS----PLDHLKQLKDQLVPGGELVLE 225 (322)
T ss_pred --CCHHHCCCc----CCcCEE--EECChhhccCC----HHHHHHHHHHhcCCCcEEEEE
Confidence 234444320 111333 34445788642 233444455778998666654
No 61
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=44.84 E-value=2.5e+02 Score=25.79 Aligned_cols=81 Identities=19% Similarity=0.183 Sum_probs=42.3
Q ss_pred eeecCCchhHHHHHHHHHHHHhhCCCcEEEeeecccccccCcccccccCCcEEEEEeccccccccccccchHHHHHHHH-
Q 037028 281 TGVGNCSERLGEIGDELKRYADGLKLNFEFLAVEKSLETLQAKDINVEDGEVLVMNSILELHCVVKESRGALNSVLQRL- 359 (503)
Q Consensus 281 TgI~~~~~~l~~tg~rL~~fA~~lgipFeF~~v~~~le~l~~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~I- 359 (503)
|||+.+.+-|+...++...-+....-..+|.. .+.+++. ..++..=+|-+.+.||++.+ ...+|+.+
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~--~d~~~lp-----~~~~~fD~v~~~~~l~~~~d-----~~~~l~ei~ 68 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIE--GDAIDLP-----FDDCEFDAVTMGYGLRNVVD-----RLRAMKEMY 68 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEE--echhhCC-----CCCCCeeEEEecchhhcCCC-----HHHHHHHHH
Confidence 67888877777766665433322222344432 2344432 22332223335677888753 23555555
Q ss_pred HhcCCc-EEEEEeec
Q 037028 360 HQLSPK-VVMLVEQD 373 (503)
Q Consensus 360 r~L~Pk-vvvlvE~e 373 (503)
|-|+|. .+++.|-.
T Consensus 69 rvLkpGG~l~i~d~~ 83 (160)
T PLN02232 69 RVLKPGSRVSILDFN 83 (160)
T ss_pred HHcCcCeEEEEEECC
Confidence 678997 44455544
No 62
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=44.50 E-value=22 Score=29.43 Aligned_cols=23 Identities=22% Similarity=0.265 Sum_probs=17.3
Q ss_pred cEEEeeecCCchhHHHHHHHHHH
Q 037028 277 RLKITGVGNCSERLGEIGDELKR 299 (503)
Q Consensus 277 ~LRITgI~~~~~~l~~tg~rL~~ 299 (503)
..++|+++.+...++.+.+++.+
T Consensus 20 ~~~~~~~D~s~~~l~~a~~~~~~ 42 (99)
T PF08242_consen 20 DARYTGVDISPSMLERARERLAE 42 (99)
T ss_dssp EEEEEEEESSSSTTSTTCCCHHH
T ss_pred CCEEEEEECCHHHHHHHHHHhhh
Confidence 69999999987777666666544
No 63
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=44.47 E-value=2.5e+02 Score=26.79 Aligned_cols=98 Identities=21% Similarity=0.265 Sum_probs=51.5
Q ss_pred ceeEEeeeccccCCCCccchhhhHHHHhcCCCCCCCcEEEeeecCCchhHHHHHHHHHHHHhhCCC--cEEEeeeccccc
Q 037028 241 SLVHVVDLGMTLGLPHGRQWHSLMQSLVNRSGKVPKRLKITGVGNCSERLGEIGDELKRYADGLKL--NFEFLAVEKSLE 318 (503)
Q Consensus 241 ~~VHIVDfgi~~G~~~G~QWpsLiqaLA~R~ggpP~~LRITgI~~~~~~l~~tg~rL~~fA~~lgi--pFeF~~v~~~le 318 (503)
..-.|+|+|.+ .|. +...|+.+ + .++|||+.+...++.+.+++.+ .++ ..+|... +++
T Consensus 63 ~~~~vLDvGcG----~G~----~~~~l~~~-~-----~~v~~~D~s~~~i~~a~~~~~~----~~~~~~i~~~~~--d~~ 122 (230)
T PRK07580 63 TGLRILDAGCG----VGS----LSIPLARR-G-----AKVVASDISPQMVEEARERAPE----AGLAGNITFEVG--DLE 122 (230)
T ss_pred CCCEEEEEeCC----CCH----HHHHHHHc-C-----CEEEEEECCHHHHHHHHHHHHh----cCCccCcEEEEc--Cch
Confidence 45689999964 332 33445543 1 3499999887777776665533 333 3444432 232
Q ss_pred ccCcccccccCCcEEEEEeccccccccccccchHHHHHHHHHhcCCc-EEEE
Q 037028 319 TLQAKDINVEDGEVLVMNSILELHCVVKESRGALNSVLQRLHQLSPK-VVML 369 (503)
Q Consensus 319 ~l~~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~Ir~L~Pk-vvvl 369 (503)
... ..=+.++ |...|||..++ ....+++.+.++.+. +++.
T Consensus 123 ~~~------~~fD~v~--~~~~l~~~~~~---~~~~~l~~l~~~~~~~~~i~ 163 (230)
T PRK07580 123 SLL------GRFDTVV--CLDVLIHYPQE---DAARMLAHLASLTRGSLIFT 163 (230)
T ss_pred hcc------CCcCEEE--EcchhhcCCHH---HHHHHHHHHHhhcCCeEEEE
Confidence 211 1112333 33345665542 345677777665444 4443
No 64
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=44.27 E-value=2.5e+02 Score=27.43 Aligned_cols=54 Identities=19% Similarity=0.314 Sum_probs=32.9
Q ss_pred hhHHHHhhhcCCceeEEeeeccccCCCCccchhhhHHHHhcCCCCCCCcEEEeeecCCchhHHHHHHH
Q 037028 229 ANASILEAFEGESLVHVVDLGMTLGLPHGRQWHSLMQSLVNRSGKVPKRLKITGVGNCSERLGEIGDE 296 (503)
Q Consensus 229 ANqAILEA~~g~~~VHIVDfgi~~G~~~G~QWpsLiqaLA~R~ggpP~~LRITgI~~~~~~l~~tg~r 296 (503)
.-+.+++.+.....-+|+|+|.|. | .+.+.|+.+ + -++|+|+.+...++...++
T Consensus 30 ~a~~l~~~l~~~~~~~vLDiGcG~----G----~~~~~l~~~-~-----~~v~~~D~s~~~l~~a~~~ 83 (251)
T PRK10258 30 SADALLAMLPQRKFTHVLDAGCGP----G----WMSRYWRER-G-----SQVTALDLSPPMLAQARQK 83 (251)
T ss_pred HHHHHHHhcCccCCCeEEEeeCCC----C----HHHHHHHHc-C-----CeEEEEECCHHHHHHHHhh
Confidence 334555666544445799999753 3 245566653 2 4799999876666544443
No 65
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=42.90 E-value=3e+02 Score=26.08 Aligned_cols=96 Identities=24% Similarity=0.317 Sum_probs=51.4
Q ss_pred eEEeeeccccCCCCccchhhhHHHHhcCCCCCCCcEEEeeecCCchhHHHHHHHHHHHHhhCCCc-EEEeeecccccccC
Q 037028 243 VHVVDLGMTLGLPHGRQWHSLMQSLVNRSGKVPKRLKITGVGNCSERLGEIGDELKRYADGLKLN-FEFLAVEKSLETLQ 321 (503)
Q Consensus 243 VHIVDfgi~~G~~~G~QWpsLiqaLA~R~ggpP~~LRITgI~~~~~~l~~tg~rL~~fA~~lgip-FeF~~v~~~le~l~ 321 (503)
-+|+|+|-|.| ..++. |+... | ..++|+|+.+...++.+.++ ++..|++ ++| +..+++++.
T Consensus 44 ~~vLDiGcGtG------~~s~~--la~~~---~-~~~V~~iD~s~~~~~~a~~~----~~~~~~~~i~~--i~~d~~~~~ 105 (181)
T TIGR00138 44 KKVIDIGSGAG------FPGIP--LAIAR---P-ELKLTLLESNHKKVAFLREV----KAELGLNNVEI--VNGRAEDFQ 105 (181)
T ss_pred CeEEEecCCCC------ccHHH--HHHHC---C-CCeEEEEeCcHHHHHHHHHH----HHHhCCCCeEE--Eecchhhcc
Confidence 48999996533 33332 22221 2 37899999887666554443 3445664 444 444455442
Q ss_pred cccccccCCcEEEEEeccccccccccccchHHHHHHHH-HhcCCcEEEEEe
Q 037028 322 AKDINVEDGEVLVMNSILELHCVVKESRGALNSVLQRL-HQLSPKVVMLVE 371 (503)
Q Consensus 322 ~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~I-r~L~PkvvvlvE 371 (503)
.. .+=+.++.|+ +|++ ..+++.+ +-|+|.-++++.
T Consensus 106 ~~----~~fD~I~s~~---~~~~--------~~~~~~~~~~LkpgG~lvi~ 141 (181)
T TIGR00138 106 HE----EQFDVITSRA---LASL--------NVLLELTLNLLKVGGYFLAY 141 (181)
T ss_pred cc----CCccEEEehh---hhCH--------HHHHHHHHHhcCCCCEEEEE
Confidence 11 1224555554 3432 2445554 458998777765
No 66
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=42.68 E-value=3e+02 Score=28.75 Aligned_cols=114 Identities=17% Similarity=0.144 Sum_probs=55.2
Q ss_pred HHHHhhhcCCceeEEeeeccccCCCCccchhhhHHHHhcCCCCCCCcEEEeeecCCchhHHHHHHHHHHHHhhCCCcEEE
Q 037028 231 ASILEAFEGESLVHVVDLGMTLGLPHGRQWHSLMQSLVNRSGKVPKRLKITGVGNCSERLGEIGDELKRYADGLKLNFEF 310 (503)
Q Consensus 231 qAILEA~~g~~~VHIVDfgi~~G~~~G~QWpsLiqaLA~R~ggpP~~LRITgI~~~~~~l~~tg~rL~~fA~~lgipFeF 310 (503)
.+|++.+...+.=+|+|+|.|. |. ++..++.+ |+ -+++||+++...+.+. +...+++... -...+
T Consensus 111 ~~~l~~l~~~~g~~VLDvGCG~----G~----~~~~~~~~--g~---~~v~GiDpS~~ml~q~-~~~~~~~~~~-~~v~~ 175 (314)
T TIGR00452 111 DRVLPHLSPLKGRTILDVGCGS----GY----HMWRMLGH--GA---KSLVGIDPTVLFLCQF-EAVRKLLDND-KRAIL 175 (314)
T ss_pred HHHHHhcCCCCCCEEEEeccCC----cH----HHHHHHHc--CC---CEEEEEcCCHHHHHHH-HHHHHHhccC-CCeEE
Confidence 3455554433344899999753 32 34445543 22 3789999876554332 2222232211 12233
Q ss_pred eeecccccccCcccccccCCcEEEEEeccccccccccccchHHHHHHHHHhcCCcEEEEEe
Q 037028 311 LAVEKSLETLQAKDINVEDGEVLVMNSILELHCVVKESRGALNSVLQRLHQLSPKVVMLVE 371 (503)
Q Consensus 311 ~~v~~~le~l~~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~Ir~L~PkvvvlvE 371 (503)
.. ..++++.+. ..=++|+ |+..|||+.+ +.+.+-..-+.|+|.-.++.+
T Consensus 176 ~~--~~ie~lp~~----~~FD~V~--s~gvL~H~~d----p~~~L~el~r~LkpGG~Lvle 224 (314)
T TIGR00452 176 EP--LGIEQLHEL----YAFDTVF--SMGVLYHRKS----PLEHLKQLKHQLVIKGELVLE 224 (314)
T ss_pred EE--CCHHHCCCC----CCcCEEE--EcchhhccCC----HHHHHHHHHHhcCCCCEEEEE
Confidence 22 234444321 1113333 3445677642 233444444679998555543
No 67
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=42.36 E-value=2.9e+02 Score=27.07 Aligned_cols=112 Identities=15% Similarity=0.063 Sum_probs=56.5
Q ss_pred eeEEeeeccccCCCCccchhhhHHHHhcCCCCCCCcEEEeeecCCchhHHHHHHHHHHHHhhCCCcEEE-----------
Q 037028 242 LVHVVDLGMTLGLPHGRQWHSLMQSLVNRSGKVPKRLKITGVGNCSERLGEIGDELKRYADGLKLNFEF----------- 310 (503)
Q Consensus 242 ~VHIVDfgi~~G~~~G~QWpsLiqaLA~R~ggpP~~LRITgI~~~~~~l~~tg~rL~~fA~~lgipFeF----------- 310 (503)
.-.|+|.|-|.| .=+..||.+ -..+|||+.+...++.. ++..|+..+.
T Consensus 38 ~~rvL~~gCG~G--------~da~~LA~~------G~~V~avD~s~~Ai~~~-------~~~~~l~~~~~~~~~~~~~~~ 96 (218)
T PRK13255 38 GSRVLVPLCGKS--------LDMLWLAEQ------GHEVLGVELSELAVEQF-------FAENGLTPQTRQSGEFEHYQA 96 (218)
T ss_pred CCeEEEeCCCCh--------HhHHHHHhC------CCeEEEEccCHHHHHHH-------HHHcCCCcccccccccccccc
Confidence 347899997543 223346654 27899999887666542 3344443221
Q ss_pred ---eeecccccccCcccccccCCcEEEEEeccccccccccccchHHHHHHHHHh-cCCc--EEEEEe--ecCCCCCCch
Q 037028 311 ---LAVEKSLETLQAKDINVEDGEVLVMNSILELHCVVKESRGALNSVLQRLHQ-LSPK--VVMLVE--QDSSHNGPFF 381 (503)
Q Consensus 311 ---~~v~~~le~l~~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~Ir~-L~Pk--vvvlvE--~ea~~ns~~F 381 (503)
+....++.++.++.+ +..=.|.-.-.+||+.. ..+..++..|.+ |+|. +++++. .+....+|+|
T Consensus 97 ~~v~~~~~D~~~l~~~~~----~~fd~v~D~~~~~~l~~---~~R~~~~~~l~~lL~pgG~~~l~~~~~~~~~~~gPp~ 168 (218)
T PRK13255 97 GEITIYCGDFFALTAADL----ADVDAVYDRAALIALPE---EMRERYVQQLAALLPAGCRGLLVTLDYPQEELAGPPF 168 (218)
T ss_pred CceEEEECcccCCCcccC----CCeeEEEehHhHhhCCH---HHHHHHHHHHHHHcCCCCeEEEEEEEeCCccCCCCCC
Confidence 011122222222111 22223333334677754 345677777755 8998 555443 2233455543
No 68
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=41.22 E-value=88 Score=30.31 Aligned_cols=114 Identities=14% Similarity=0.092 Sum_probs=67.5
Q ss_pred ceeEEeeeccccCCCCccchhhhHHHHhcCCCCCCCcEEE------eeecCCchhHHHHHHHHHHHHhhCCCcEEEeeec
Q 037028 241 SLVHVVDLGMTLGLPHGRQWHSLMQSLVNRSGKVPKRLKI------TGVGNCSERLGEIGDELKRYADGLKLNFEFLAVE 314 (503)
Q Consensus 241 ~~VHIVDfgi~~G~~~G~QWpsLiqaLA~R~ggpP~~LRI------TgI~~~~~~l~~tg~rL~~fA~~lgipFeF~~v~ 314 (503)
.+|+||.|=-+. ..-+..=.++|.+|+.+ .+.+ |+|.. .+....++.-+.+|+++.++.|-|.++.
T Consensus 59 GKV~lvn~~Asw-c~~c~~e~P~l~~l~~~------~~~~~~y~~t~~IN~-dd~~~~~~~fVk~fie~~~~~~P~~~vl 130 (184)
T TIGR01626 59 GKVRVVHHIAGR-TSAKEXNASLIDAIKAA------KFPPVKYQTTTIINA-DDAIVGTGMFVKSSAKKGKKENPWSQVV 130 (184)
T ss_pred CCEEEEEEEecC-CChhhccchHHHHHHHc------CCCcccccceEEEEC-ccchhhHHHHHHHHHHHhcccCCcceEE
Confidence 589999986432 12345556899999654 3666 77763 3457778889999999999888766543
Q ss_pred ccccccCcccccccC-CcE-EEEEecccccccccc--ccchHHHHHHHHHhc
Q 037028 315 KSLETLQAKDINVED-GEV-LVMNSILELHCVVKE--SRGALNSVLQRLHQL 362 (503)
Q Consensus 315 ~~le~l~~~~l~~~~-~Ea-LaVN~~~~Lh~l~~e--s~~~~~~~L~~Ir~L 362 (503)
.+-+......+++.. .++ ++||-.-.+...... +....+.++..|++|
T Consensus 131 lD~~g~v~~~~gv~~~P~T~fVIDk~GkVv~~~~G~l~~ee~e~~~~li~~l 182 (184)
T TIGR01626 131 LDDKGAVKNAWQLNSEDSAIIVLDKTGKVKFVKEGALSDSDIQTVISLVNGL 182 (184)
T ss_pred ECCcchHHHhcCCCCCCceEEEECCCCcEEEEEeCCCCHHHHHHHHHHHHHH
Confidence 211222222344433 356 577766544332221 112334566666654
No 69
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=39.21 E-value=46 Score=32.49 Aligned_cols=54 Identities=19% Similarity=0.281 Sum_probs=39.1
Q ss_pred hhcCCceeEEeeeccccCCCCccchhhhHHHHhcCCCCCCCcEEEeeecCCchhHHHHHHHHHHHH
Q 037028 236 AFEGESLVHVVDLGMTLGLPHGRQWHSLMQSLVNRSGKVPKRLKITGVGNCSERLGEIGDELKRYA 301 (503)
Q Consensus 236 A~~g~~~VHIVDfgi~~G~~~G~QWpsLiqaLA~R~ggpP~~LRITgI~~~~~~l~~tg~rL~~fA 301 (503)
+++=.+.=|++|+|-+-| +-+++|. ++ .| ..|+++|+...+.++.+.+++.+|-
T Consensus 29 ~L~~~~g~~l~DIGaGtG-si~iE~a-~~---------~p-~~~v~AIe~~~~a~~~~~~N~~~fg 82 (187)
T COG2242 29 KLRPRPGDRLWDIGAGTG-SITIEWA-LA---------GP-SGRVIAIERDEEALELIERNAARFG 82 (187)
T ss_pred hhCCCCCCEEEEeCCCcc-HHHHHHH-Hh---------CC-CceEEEEecCHHHHHHHHHHHHHhC
Confidence 344344449999998766 5667776 21 24 6999999998888888888876654
No 70
>PF07521 RMMBL: RNA-metabolising metallo-beta-lactamase; InterPro: IPR011108 The metallo-beta-lactamase fold contains five sequence motifs. The first four motifs are found in IPR001279 from INTERPRO and are common to all metallo-beta-lactamases. The fifth motif appears to be specific to function. This entry represents the fifth motif from metallo-beta-lactamases involved in RNA metabolism [].; PDB: 3ZQ4_D 2I7T_A 2I7V_A 2YCB_B 3BK1_A 3T3N_A 3BK2_A 3T3O_A 3AF5_A 3AF6_A ....
Probab=38.89 E-value=51 Score=24.12 Aligned_cols=38 Identities=21% Similarity=0.426 Sum_probs=24.4
Q ss_pred cEEEEEecc-ccccccccccchHHHHHHHHHhcCCcEEEEEe
Q 037028 331 EVLVMNSIL-ELHCVVKESRGALNSVLQRLHQLSPKVVMLVE 371 (503)
Q Consensus 331 EaLaVN~~~-~Lh~l~~es~~~~~~~L~~Ir~L~PkvvvlvE 371 (503)
|.+-|||.. +++ +... ...+.+++.|+.++|+-+++|-
T Consensus 1 e~i~v~a~v~~~~-fSgH--ad~~~L~~~i~~~~p~~vilVH 39 (43)
T PF07521_consen 1 EMIPVRARVEQID-FSGH--ADREELLEFIEQLNPRKVILVH 39 (43)
T ss_dssp CEEE--SEEEESG-CSSS---BHHHHHHHHHHHCSSEEEEES
T ss_pred CEEEeEEEEEEEe-ecCC--CCHHHHHHHHHhcCCCEEEEec
Confidence 355677655 333 4332 3467899999999999988874
No 71
>COG0123 AcuC Deacetylases, including yeast histone deacetylase and acetoin utilization protein [Chromatin structure and dynamics / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=38.68 E-value=23 Score=37.49 Aligned_cols=31 Identities=26% Similarity=0.352 Sum_probs=23.9
Q ss_pred hhHHHHhhhcCCceeEEeeeccccCCCCccchhhh
Q 037028 229 ANASILEAFEGESLVHVVDLGMTLGLPHGRQWHSL 263 (503)
Q Consensus 229 ANqAILEA~~g~~~VHIVDfgi~~G~~~G~QWpsL 263 (503)
|-+.+++. |.+||=|||||+..| .|+|+.--
T Consensus 144 aa~~l~~~--~~~RVaIiD~DvHHG--nGTqeify 174 (340)
T COG0123 144 AAKYLLKK--GVKRVAIIDFDVHHG--NGTQEIFY 174 (340)
T ss_pred HHHHHHHc--CCCcEEEEEecCCCC--hhhHHHHc
Confidence 34445555 889999999999976 99998654
No 72
>PRK03646 dadX alanine racemase; Reviewed
Probab=37.10 E-value=74 Score=33.64 Aligned_cols=54 Identities=17% Similarity=0.191 Sum_probs=33.2
Q ss_pred ceeEE-eeeccccCCCCccc---hhhhHHHHhcCCCCCCCcEEEeeecCC---chhHHHHHHHHHHHHh
Q 037028 241 SLVHV-VDLGMTLGLPHGRQ---WHSLMQSLVNRSGKVPKRLKITGVGNC---SERLGEIGDELKRYAD 302 (503)
Q Consensus 241 ~~VHI-VDfgi~~G~~~G~Q---WpsLiqaLA~R~ggpP~~LRITgI~~~---~~~l~~tg~rL~~fA~ 302 (503)
-+||| ||-|++ +.|+. ++.+++.+.. .| .|+|+||-.. .+....+.+.+.+|-+
T Consensus 117 ~~vhLkvDTGM~---R~G~~~~e~~~~~~~i~~----~~-~l~~~Gi~sH~a~ad~~~~~~~Q~~~F~~ 177 (355)
T PRK03646 117 LDIYLKVNSGMN---RLGFQPERVQTVWQQLRA----MG-NVGEMTLMSHFARADHPDGISEAMARIEQ 177 (355)
T ss_pred eEEEEEeeCCCC---CCCCCHHHHHHHHHHHHh----CC-CCEEEEEEcCCCCCCCCCHHHHHHHHHHH
Confidence 36898 888875 78885 5556665543 23 6999999753 2222235555555533
No 73
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=35.91 E-value=2.2e+02 Score=30.23 Aligned_cols=100 Identities=13% Similarity=0.105 Sum_probs=51.9
Q ss_pred ceeEEeeeccccCCCCccchhhhHHHHhcCCCCCCCcEEEeeecCCchhHHHHHHHHHHHHhhCCCcEEEeeeccccccc
Q 037028 241 SLVHVVDLGMTLGLPHGRQWHSLMQSLVNRSGKVPKRLKITGVGNCSERLGEIGDELKRYADGLKLNFEFLAVEKSLETL 320 (503)
Q Consensus 241 ~~VHIVDfgi~~G~~~G~QWpsLiqaLA~R~ggpP~~LRITgI~~~~~~l~~tg~rL~~fA~~lgipFeF~~v~~~le~l 320 (503)
...+|+|+|.+ .|. +...|+.+-+ + .++|+|+.+...++.+.++.. .-++. | +..+++++
T Consensus 113 ~~~~VLDLGcG----tG~----~~l~La~~~~--~--~~VtgVD~S~~mL~~A~~k~~----~~~i~--~--i~gD~e~l 172 (340)
T PLN02490 113 RNLKVVDVGGG----TGF----TTLGIVKHVD--A--KNVTILDQSPHQLAKAKQKEP----LKECK--I--IEGDAEDL 172 (340)
T ss_pred CCCEEEEEecC----CcH----HHHHHHHHCC--C--CEEEEEECCHHHHHHHHHhhh----ccCCe--E--EeccHHhC
Confidence 45689999964 333 3334454431 2 589999987666666555421 12332 2 33344433
Q ss_pred CcccccccCCcEEEEEeccccccccccccchHHHHHHH-HHhcCCcEEEEE
Q 037028 321 QAKDINVEDGEVLVMNSILELHCVVKESRGALNSVLQR-LHQLSPKVVMLV 370 (503)
Q Consensus 321 ~~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~-Ir~L~Pkvvvlv 370 (503)
... -..=++++.|. .||++.+. +.+|+. .+.|+|.-.+++
T Consensus 173 p~~---~~sFDvVIs~~--~L~~~~d~-----~~~L~e~~rvLkPGG~LvI 213 (340)
T PLN02490 173 PFP---TDYADRYVSAG--SIEYWPDP-----QRGIKEAYRVLKIGGKACL 213 (340)
T ss_pred CCC---CCceeEEEEcC--hhhhCCCH-----HHHHHHHHHhcCCCcEEEE
Confidence 211 11123455543 45776542 234554 467899755443
No 74
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=35.26 E-value=1e+02 Score=29.80 Aligned_cols=58 Identities=14% Similarity=0.115 Sum_probs=45.7
Q ss_pred ccchhhhHHHHhcCCCCCCCcEEEeeecCCchhHHHHHHHHHHHHhhCCCcEEEeeecc
Q 037028 257 GRQWHSLMQSLVNRSGKVPKRLKITGVGNCSERLGEIGDELKRYADGLKLNFEFLAVEK 315 (503)
Q Consensus 257 G~QWpsLiqaLA~R~ggpP~~LRITgI~~~~~~l~~tg~rL~~fA~~lgipFeF~~v~~ 315 (503)
+..||-++..+..+...-+ .-.|+-++.+.+.|+.++.-..++++..|.++++..-.+
T Consensus 9 S~~~~~~l~~~l~~~~~l~-~~ei~L~Did~~RL~~~~~~~~~~~~~~~~~~~v~~ttd 66 (183)
T PF02056_consen 9 STYFPLLLLGDLLRTEELS-GSEIVLMDIDEERLEIVERLARRMVEEAGADLKVEATTD 66 (183)
T ss_dssp SCCHHHHHHHHHHCTTTST-EEEEEEE-SCHHHHHHHHHHHHHHHHHCTTSSEEEEESS
T ss_pred hHhhHHHHHHHHhcCccCC-CcEEEEEcCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCC
Confidence 6899988887666655444 457777777789999999999999999999999986543
No 75
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=33.72 E-value=3.4e+02 Score=28.82 Aligned_cols=99 Identities=19% Similarity=0.219 Sum_probs=57.8
Q ss_pred EEeeeccccCCCCccchhhhHHHHhcCCCCCCCcEEEeeecCCchhHHHHHHHHHHHHhhCCC-cEEEeeecccccccCc
Q 037028 244 HVVDLGMTLGLPHGRQWHSLMQSLVNRSGKVPKRLKITGVGNCSERLGEIGDELKRYADGLKL-NFEFLAVEKSLETLQA 322 (503)
Q Consensus 244 HIVDfgi~~G~~~G~QWpsLiqaLA~R~ggpP~~LRITgI~~~~~~l~~tg~rL~~fA~~lgi-pFeF~~v~~~le~l~~ 322 (503)
+|+|++-|.| . +--.||.+ + -+++||+.....++.+.+++ +..|+ ..+|. ..+.+++..
T Consensus 236 ~vLDL~cG~G------~--~~l~la~~-~-----~~v~~vE~~~~av~~a~~N~----~~~~~~~~~~~--~~d~~~~~~ 295 (374)
T TIGR02085 236 QMWDLFCGVG------G--FGLHCAGP-D-----TQLTGIEIESEAIACAQQSA----QMLGLDNLSFA--ALDSAKFAT 295 (374)
T ss_pred EEEEccCCcc------H--HHHHHhhc-C-----CeEEEEECCHHHHHHHHHHH----HHcCCCcEEEE--ECCHHHHHH
Confidence 6899996432 2 22334432 1 37999998877777666554 44455 34553 233333221
Q ss_pred ccccccCCcEEEEEeccccccccccccchHHHHHHHHHhcCCcEEEEEeec
Q 037028 323 KDINVEDGEVLVMNSILELHCVVKESRGALNSVLQRLHQLSPKVVMLVEQD 373 (503)
Q Consensus 323 ~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~Ir~L~PkvvvlvE~e 373 (503)
. +. ..-++|++|=.. .+....++..|..++|+-+|.++-+
T Consensus 296 ~-~~-~~~D~vi~DPPr---------~G~~~~~l~~l~~~~p~~ivyvsc~ 335 (374)
T TIGR02085 296 A-QM-SAPELVLVNPPR---------RGIGKELCDYLSQMAPKFILYSSCN 335 (374)
T ss_pred h-cC-CCCCEEEECCCC---------CCCcHHHHHHHHhcCCCeEEEEEeC
Confidence 1 10 123677777432 1233578888889999888887743
No 76
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=33.20 E-value=1.4e+02 Score=30.29 Aligned_cols=100 Identities=20% Similarity=0.289 Sum_probs=63.9
Q ss_pred CceeEEeeeccccCCCCccchhhhHHHHhcCCCCCCCcEEEeeecCCchhHHHHHHHHHHHHhhCCCcEEEeeecccccc
Q 037028 240 ESLVHVVDLGMTLGLPHGRQWHSLMQSLVNRSGKVPKRLKITGVGNCSERLGEIGDELKRYADGLKLNFEFLAVEKSLET 319 (503)
Q Consensus 240 ~~~VHIVDfgi~~G~~~G~QWpsLiqaLA~R~ggpP~~LRITgI~~~~~~l~~tg~rL~~fA~~lgipFeF~~v~~~le~ 319 (503)
-...-|+|+|.| -| .|-+.||+. | ..+|||+.....++... ..|..-|+..+|... ..|+
T Consensus 58 l~g~~vLDvGCG----gG----~Lse~mAr~-G-----a~VtgiD~se~~I~~Ak----~ha~e~gv~i~y~~~--~~ed 117 (243)
T COG2227 58 LPGLRVLDVGCG----GG----ILSEPLARL-G-----ASVTGIDASEKPIEVAK----LHALESGVNIDYRQA--TVED 117 (243)
T ss_pred CCCCeEEEecCC----cc----HhhHHHHHC-C-----CeeEEecCChHHHHHHH----Hhhhhccccccchhh--hHHH
Confidence 345678999964 23 788888864 2 88999997765554443 356677888777654 2444
Q ss_pred cCcccccccCCcEEEEEeccccccccccccchHHHHHHHH-HhcCCcEEEE
Q 037028 320 LQAKDINVEDGEVLVMNSILELHCVVKESRGALNSVLQRL-HQLSPKVVML 369 (503)
Q Consensus 320 l~~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~I-r~L~Pkvvvl 369 (503)
|.... +-.=||-|+=-|+|+.+. +.|++.. +-++|.-+++
T Consensus 118 l~~~~-----~~FDvV~cmEVlEHv~dp-----~~~~~~c~~lvkP~G~lf 158 (243)
T COG2227 118 LASAG-----GQFDVVTCMEVLEHVPDP-----ESFLRACAKLVKPGGILF 158 (243)
T ss_pred HHhcC-----CCccEEEEhhHHHccCCH-----HHHHHHHHHHcCCCcEEE
Confidence 43321 334467788788998763 3466655 6679974443
No 77
>COG1500 Predicted exosome subunit [Translation, ribosomal structure and biogenesis]
Probab=32.38 E-value=1.2e+02 Score=30.53 Aligned_cols=59 Identities=20% Similarity=0.242 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHhHhhhcCCCCcccc-ccchhhHHHHHhcCCceeecCChH-HHHHHHHH
Q 037028 408 TKRAKIEQFYFAEEIKNIVSCEGPARVER-HERVDQWRRRMSRAGFQSVPIKML-MQAKQWLR 468 (503)
Q Consensus 408 ~eR~~iE~~~lg~eI~NiVAcEG~~RvER-hE~~~~Wr~rm~~aGF~~~~ls~~-~qA~~lL~ 468 (503)
..|.++|. -.++|.|+|+..+-+..-+ +-+-..=...|+.|||...|+..+ .|++..|+
T Consensus 91 qR~~m~e~--k~rqIi~~IsRn~IdP~t~~P~Pp~rIe~Ameeakv~id~~K~ae~Qv~evlK 151 (234)
T COG1500 91 QRREMLEE--KKRQIINIISRNAIDPQTKAPHPPARIEKAMEEAKVHIDPFKSAEEQVQEVLK 151 (234)
T ss_pred HHHHHHHH--HHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhcCcccCCCCCHHHHHHHHHH
Confidence 34455666 4899999999877655443 555667778899999999999854 67766665
No 78
>PRK00811 spermidine synthase; Provisional
Probab=32.07 E-value=4.7e+02 Score=26.63 Aligned_cols=109 Identities=15% Similarity=0.092 Sum_probs=55.4
Q ss_pred EEeeeccccCCCCccchhhhHHHHhcCCCCCCCcEEEeeecCCchhHHHHHHHHHHHHhhC--CCcEEEeeecccccccC
Q 037028 244 HVVDLGMTLGLPHGRQWHSLMQSLVNRSGKVPKRLKITGVGNCSERLGEIGDELKRYADGL--KLNFEFLAVEKSLETLQ 321 (503)
Q Consensus 244 HIVDfgi~~G~~~G~QWpsLiqaLA~R~ggpP~~LRITgI~~~~~~l~~tg~rL~~fA~~l--gipFeF~~v~~~le~l~ 321 (503)
+|+|+|.|.| .+...+..++ + .-+||+|+.+...++...+.+.++.... +=.+++. ..+....-
T Consensus 79 ~VL~iG~G~G--------~~~~~~l~~~---~-~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~--~~Da~~~l 144 (283)
T PRK00811 79 RVLIIGGGDG--------GTLREVLKHP---S-VEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELV--IGDGIKFV 144 (283)
T ss_pred EEEEEecCch--------HHHHHHHcCC---C-CCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEE--ECchHHHH
Confidence 6788886533 2344444442 2 3589999988877777777666554432 2223332 21211110
Q ss_pred cccccccCCcEEEEEeccccccccccccchHHHHHHHH-HhcCCcEEEEEe
Q 037028 322 AKDINVEDGEVLVMNSILELHCVVKESRGALNSVLQRL-HQLSPKVVMLVE 371 (503)
Q Consensus 322 ~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~I-r~L~PkvvvlvE 371 (503)
.. .-..=+++++++.-. ...... --...|++.+ +.|+|.-++++-
T Consensus 145 ~~--~~~~yDvIi~D~~dp--~~~~~~-l~t~ef~~~~~~~L~~gGvlv~~ 190 (283)
T PRK00811 145 AE--TENSFDVIIVDSTDP--VGPAEG-LFTKEFYENCKRALKEDGIFVAQ 190 (283)
T ss_pred hh--CCCcccEEEECCCCC--CCchhh-hhHHHHHHHHHHhcCCCcEEEEe
Confidence 00 001235777765321 111000 0124677655 679999877764
No 79
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=31.88 E-value=4.2e+02 Score=28.95 Aligned_cols=82 Identities=13% Similarity=0.235 Sum_probs=43.7
Q ss_pred cEEEEEeccccccccccccchHHHHHHHHHhcCCcEEEEEeecCCCCCCchHHHHHHHHHHHHHHHhhhhccCCCCCHHH
Q 037028 331 EVLVMNSILELHCVVKESRGALNSVLQRLHQLSPKVVMLVEQDSSHNGPFFLGRFMEALHYYSAIFDSLDAMLPKYDTKR 410 (503)
Q Consensus 331 EaLaVN~~~~Lh~l~~es~~~~~~~L~~Ir~L~PkvvvlvE~ea~~ns~~F~~RF~eAL~yYsAlFDSLda~lp~~~~eR 410 (503)
+.++||+.-..+= -+.++-....|...+|+.|+..|.+- ...++.+=.+...| ...-+...++.-.||
T Consensus 173 ~~ilIdT~GWi~G-----~~g~elk~~li~~ikP~~Ii~l~~~~---~~~~l~~~~~~~~~----~~~~~~~~~~sR~ER 240 (398)
T COG1341 173 DFILIDTDGWIKG-----WGGLELKRALIDAIKPDLIIALERAN---ELSPLLEGVESIVY----LKVPDAVAPRSREER 240 (398)
T ss_pred CEEEEcCCCceeC-----chHHHHHHHHHhhcCCCEEEEecccc---ccchhhhcccCceE----EeccccccccChhHH
Confidence 3567777654431 12456677788999999999998773 33333333333333 233333344443455
Q ss_pred HHHHHHHHHHHHhH
Q 037028 411 AKIEQFYFAEEIKN 424 (503)
Q Consensus 411 ~~iE~~~lg~eI~N 424 (503)
...=..-+++.+.+
T Consensus 241 ~~~R~e~~~ryf~~ 254 (398)
T COG1341 241 KELREEKYRRYFEG 254 (398)
T ss_pred HHHHHHHHHHhccC
Confidence 44422334555544
No 80
>PTZ00063 histone deacetylase; Provisional
Probab=31.47 E-value=32 Score=37.69 Aligned_cols=59 Identities=7% Similarity=0.062 Sum_probs=35.0
Q ss_pred CcEEEEEeccccccccccc-------cchHHHHHHHHHhcCCcEEEEEeecCCCCCCchHHHHHHHHHHHHHHH
Q 037028 330 GEVLVMNSILELHCVVKES-------RGALNSVLQRLHQLSPKVVMLVEQDSSHNGPFFLGRFMEALHYYSAIF 396 (503)
Q Consensus 330 ~EaLaVN~~~~Lh~l~~es-------~~~~~~~L~~Ir~L~PkvvvlvE~ea~~ns~~F~~RF~eAL~yYsAlF 396 (503)
-|+|+|.|-+=-|. .+. ......+++.+++++..++++.|..=+ - .....++.|..++.
T Consensus 251 Pd~IvvqaG~D~~~--~DpLg~l~Lt~~g~~~~~~~~~~~~~pil~l~gGGY~--~----~~lar~w~~~t~~~ 316 (436)
T PTZ00063 251 PGAIVLQCGADSLT--GDRLGRFNLTIKGHAACVEFVRSLNIPLLVLGGGGYT--I----RNVARCWAYETGVI 316 (436)
T ss_pred CCEEEEECCccccC--CCCCCCcccCHHHHHHHHHHHHhcCCCEEEEeCccCC--c----hHHHHHHHHHHHHH
Confidence 47888887653321 111 112345788888898888887654432 2 33556777777666
No 81
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=31.37 E-value=1.3e+02 Score=25.20 Aligned_cols=44 Identities=20% Similarity=0.267 Sum_probs=28.8
Q ss_pred EEeeeccccCCCCccchhhhHHHHhcCCCCCCCcEEEeeecCCchhHHHHHHHHHH
Q 037028 244 HVVDLGMTLGLPHGRQWHSLMQSLVNRSGKVPKRLKITGVGNCSERLGEIGDELKR 299 (503)
Q Consensus 244 HIVDfgi~~G~~~G~QWpsLiqaLA~R~ggpP~~LRITgI~~~~~~l~~tg~rL~~ 299 (503)
+|+|+|.+.| .+...|+.+. | ..++|+|+.+...++.+.+++..
T Consensus 22 ~vldlG~G~G--------~~~~~l~~~~---~-~~~v~~vD~s~~~~~~a~~~~~~ 65 (124)
T TIGR02469 22 VLWDIGAGSG--------SITIEAARLV---P-NGRVYAIERNPEALRLIERNARR 65 (124)
T ss_pred EEEEeCCCCC--------HHHHHHHHHC---C-CceEEEEcCCHHHHHHHHHHHHH
Confidence 8999997543 3344455542 3 37899999887666666555443
No 82
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=30.97 E-value=2e+02 Score=28.78 Aligned_cols=57 Identities=16% Similarity=0.239 Sum_probs=34.9
Q ss_pred HhhhHHHHhhhc----CCceeEEeeeccccCCCCccchhhhHHHHhcCCCCCCCcEEEeeecCCchhHHHHHHHH
Q 037028 227 FVANASILEAFE----GESLVHVVDLGMTLGLPHGRQWHSLMQSLVNRSGKVPKRLKITGVGNCSERLGEIGDEL 297 (503)
Q Consensus 227 ftANqAILEA~~----g~~~VHIVDfgi~~G~~~G~QWpsLiqaLA~R~ggpP~~LRITgI~~~~~~l~~tg~rL 297 (503)
|..++.+++.+- -.+.=+|+|+|-|.| .|...|+.+. .++|+|+.+...++...+++
T Consensus 11 fl~d~~~~~~iv~~~~~~~~~~VLEIG~G~G--------~lt~~L~~~~------~~v~~vEid~~~~~~l~~~~ 71 (258)
T PRK14896 11 FLIDDRVVDRIVEYAEDTDGDPVLEIGPGKG--------ALTDELAKRA------KKVYAIELDPRLAEFLRDDE 71 (258)
T ss_pred ccCCHHHHHHHHHhcCCCCcCeEEEEeCccC--------HHHHHHHHhC------CEEEEEECCHHHHHHHHHHh
Confidence 444444444433 233457999997543 4666677661 37999998876666555554
No 83
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=30.96 E-value=4.1e+02 Score=25.38 Aligned_cols=111 Identities=13% Similarity=0.128 Sum_probs=56.0
Q ss_pred ceeEEeeeccccCCCCccchhhhHHHHhcCCCCCCCcEEEeeecCCchhHHHHHHHHHHHHhhCCC-cEEEeeecccc-c
Q 037028 241 SLVHVVDLGMTLGLPHGRQWHSLMQSLVNRSGKVPKRLKITGVGNCSERLGEIGDELKRYADGLKL-NFEFLAVEKSL-E 318 (503)
Q Consensus 241 ~~VHIVDfgi~~G~~~G~QWpsLiqaLA~R~ggpP~~LRITgI~~~~~~l~~tg~rL~~fA~~lgi-pFeF~~v~~~l-e 318 (503)
+.-.|+|+|-+. |.- ...|+.+. | .-++|||+.+.+.++.+.+++.. .++ +++| +..++ +
T Consensus 40 ~~~~VLDiGcGt----G~~----~~~la~~~---p-~~~v~gVD~s~~~i~~a~~~~~~----~~~~~v~~--~~~d~~~ 101 (202)
T PRK00121 40 DAPIHLEIGFGK----GEF----LVEMAKAN---P-DINFIGIEVHEPGVGKALKKIEE----EGLTNLRL--LCGDAVE 101 (202)
T ss_pred CCCeEEEEccCC----CHH----HHHHHHHC---C-CccEEEEEechHHHHHHHHHHHH----cCCCCEEE--EecCHHH
Confidence 445799999753 322 33344432 3 36899999988777766665543 233 2444 33344 4
Q ss_pred ccCcccccccCCcEEEEEeccccccccccc-cchHHHHHHHH-HhcCCcEEEEE
Q 037028 319 TLQAKDINVEDGEVLVMNSILELHCVVKES-RGALNSVLQRL-HQLSPKVVMLV 370 (503)
Q Consensus 319 ~l~~~~l~~~~~EaLaVN~~~~Lh~l~~es-~~~~~~~L~~I-r~L~Pkvvvlv 370 (503)
.+.. .+.-..=+.+++|.....+...... ......+|+.+ +-|+|.-+++.
T Consensus 102 ~l~~-~~~~~~~D~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i 154 (202)
T PRK00121 102 VLLD-MFPDGSLDRIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHF 154 (202)
T ss_pred HHHH-HcCccccceEEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEE
Confidence 3321 0111112456666543322211110 00124677776 47899754443
No 84
>TIGR01716 RGG_Cterm transcriptional activator, Rgg/GadR/MutR family, C-terminal domain. This model describes the whole, except for a 60 residue N-terminal helix-turn-helix DNA-binding domain (PFAM pfam01381) of the family of proteins related to the transcriptional regulator Rgg, also called RopB. Rgg is required for secretion of several proteins, including a cysteine proteinase associated with virulence. GadR is a positive regulator of a glutamate-dependent acid resistance mechanism. MutR is a transcriptional activator for mutacin biosynthesis genes in Streptococcus mutans. This family appears restricted to the low-GC Gram-positive bacteria, including at least eight members in Lactococcus lactis.
Probab=30.96 E-value=85 Score=30.01 Aligned_cols=53 Identities=17% Similarity=0.142 Sum_probs=44.2
Q ss_pred HHHHHHHHH-HHHhcCCHHHHHHHHHHHhhccCCCCCchhhHHHHHHHHHHhhh
Q 037028 131 LVQQLIACA-EAVACRDKAHASALLSELRVNALVFGTSFQRVASCFVQGLSDRL 183 (503)
Q Consensus 131 L~~LLl~CA-eAV~~gd~~~A~~lL~~L~~~as~~Gd~~qRlA~yF~eAL~~Rl 183 (503)
+..+|+.+. ..+..++...|..++..|..+..|..+-..|+...|.+|+..=.
T Consensus 127 i~~il~N~~~~~i~~~~~~~a~~~l~~l~~l~~~~~~~~~ki~~~f~~~l~~y~ 180 (220)
T TIGR01716 127 VIQLLLNIAVLLIEKNEFSYAQYFLEKLEKILDPEDDLYERILFNFLKGIILYK 180 (220)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHHHH
Confidence 556666666 77888899999999999999887777888999999999997533
No 85
>PRK04148 hypothetical protein; Provisional
Probab=30.46 E-value=1e+02 Score=28.42 Aligned_cols=47 Identities=17% Similarity=0.311 Sum_probs=30.4
Q ss_pred HHhhhcCCceeEEeeeccccCCCCccchhhhHHHHhcCCCCCCCcEEEeeecCCchhHHH
Q 037028 233 ILEAFEGESLVHVVDLGMTLGLPHGRQWHSLMQSLVNRSGKVPKRLKITGVGNCSERLGE 292 (503)
Q Consensus 233 ILEA~~g~~~VHIVDfgi~~G~~~G~QWpsLiqaLA~R~ggpP~~LRITgI~~~~~~l~~ 292 (503)
|.+.....+.-.|+|.|+|+| ..+-+.|++. | ..+|+|+.+....+.
T Consensus 8 l~~~~~~~~~~kileIG~GfG-------~~vA~~L~~~-G-----~~ViaIDi~~~aV~~ 54 (134)
T PRK04148 8 IAENYEKGKNKKIVELGIGFY-------FKVAKKLKES-G-----FDVIVIDINEKAVEK 54 (134)
T ss_pred HHHhcccccCCEEEEEEecCC-------HHHHHHHHHC-C-----CEEEEEECCHHHHHH
Confidence 445555555567999998655 4556667753 2 589999977554433
No 86
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=29.07 E-value=4.4e+02 Score=27.09 Aligned_cols=100 Identities=18% Similarity=0.251 Sum_probs=58.2
Q ss_pred eEEeeeccccCCCCccchhhhHHHHhcCCCCCCCcEEEeeecCCchhHHHHHHHHHHHHhhCCCc-EEEeeecccccccC
Q 037028 243 VHVVDLGMTLGLPHGRQWHSLMQSLVNRSGKVPKRLKITGVGNCSERLGEIGDELKRYADGLKLN-FEFLAVEKSLETLQ 321 (503)
Q Consensus 243 VHIVDfgi~~G~~~G~QWpsLiqaLA~R~ggpP~~LRITgI~~~~~~l~~tg~rL~~fA~~lgip-FeF~~v~~~le~l~ 321 (503)
-+|+|++-|. |. +--.||.+ + -+++||+.....++.+.+.. +..|++ .+|.. .+.+++.
T Consensus 175 ~~VLDl~cG~----G~----~sl~la~~-~-----~~V~gvD~s~~av~~A~~n~----~~~~l~~v~~~~--~D~~~~~ 234 (315)
T PRK03522 175 RSMWDLFCGV----GG----FGLHCATP-G-----MQLTGIEISAEAIACAKQSA----AELGLTNVQFQA--LDSTQFA 234 (315)
T ss_pred CEEEEccCCC----CH----HHHHHHhc-C-----CEEEEEeCCHHHHHHHHHHH----HHcCCCceEEEE--cCHHHHH
Confidence 5799999653 32 33345542 1 37999998877777665544 455663 55643 3333332
Q ss_pred cccccccCCcEEEEEeccccccccccccchHHHHHHHHHhcCCcEEEEEeec
Q 037028 322 AKDINVEDGEVLVMNSILELHCVVKESRGALNSVLQRLHQLSPKVVMLVEQD 373 (503)
Q Consensus 322 ~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~Ir~L~PkvvvlvE~e 373 (503)
.. . ...-++|++|=. + .+..+.++..+.+++|+.++.+.-+
T Consensus 235 ~~-~-~~~~D~Vv~dPP----r-----~G~~~~~~~~l~~~~~~~ivyvsc~ 275 (315)
T PRK03522 235 TA-Q-GEVPDLVLVNPP----R-----RGIGKELCDYLSQMAPRFILYSSCN 275 (315)
T ss_pred Hh-c-CCCCeEEEECCC----C-----CCccHHHHHHHHHcCCCeEEEEECC
Confidence 11 0 012357777622 1 1223567888899999988776544
No 87
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=28.90 E-value=4e+02 Score=26.33 Aligned_cols=52 Identities=23% Similarity=0.238 Sum_probs=32.7
Q ss_pred HHHHhhhcCCceeEEeeeccccCCCCccchhhhHHHHhcCCCCCCCcEEEeeecCCchhHHHHHHH
Q 037028 231 ASILEAFEGESLVHVVDLGMTLGLPHGRQWHSLMQSLVNRSGKVPKRLKITGVGNCSERLGEIGDE 296 (503)
Q Consensus 231 qAILEA~~g~~~VHIVDfgi~~G~~~G~QWpsLiqaLA~R~ggpP~~LRITgI~~~~~~l~~tg~r 296 (503)
+.|++++...+.=.|+|+|-|.| .|...|+.+. + ++++|+.+.+.++...++
T Consensus 19 ~~i~~~~~~~~~~~VLEiG~G~G--------~lt~~L~~~~---~---~v~~iE~d~~~~~~l~~~ 70 (253)
T TIGR00755 19 QKIVEAANVLEGDVVLEIGPGLG--------ALTEPLLKRA---K---KVTAIEIDPRLAEILRKL 70 (253)
T ss_pred HHHHHhcCCCCcCEEEEeCCCCC--------HHHHHHHHhC---C---cEEEEECCHHHHHHHHHH
Confidence 34555554445568999996543 4677777763 2 399998876555544443
No 88
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=28.10 E-value=5.2e+02 Score=24.44 Aligned_cols=100 Identities=22% Similarity=0.307 Sum_probs=51.0
Q ss_pred eeEEeeeccccCCCCccchhhhHHHHhcCCCCCCCcEEEeeecCCchhHHHHHHHHHHHHhhCCC-cEEEeeeccccccc
Q 037028 242 LVHVVDLGMTLGLPHGRQWHSLMQSLVNRSGKVPKRLKITGVGNCSERLGEIGDELKRYADGLKL-NFEFLAVEKSLETL 320 (503)
Q Consensus 242 ~VHIVDfgi~~G~~~G~QWpsLiqaLA~R~ggpP~~LRITgI~~~~~~l~~tg~rL~~fA~~lgi-pFeF~~v~~~le~l 320 (503)
...|+|+|-+ .| .+...++.. + .++|+|+.+...++...+++. ..++ ++.|.. .+.+++
T Consensus 46 ~~~vLdlG~G----~G----~~~~~l~~~-~-----~~v~~iD~s~~~~~~a~~~~~----~~~~~~~~~~~--~d~~~~ 105 (224)
T TIGR01983 46 GLRVLDVGCG----GG----LLSEPLARL-G-----ANVTGIDASEENIEVAKLHAK----KDPLLKIEYRC--TSVEDL 105 (224)
T ss_pred CCeEEEECCC----CC----HHHHHHHhc-C-----CeEEEEeCCHHHHHHHHHHHH----HcCCCceEEEe--CCHHHh
Confidence 5689999964 33 233344442 2 249999987766666655543 2344 344432 223322
Q ss_pred CcccccccCCcEEEEEeccccccccccccchHHHHHHHH-HhcCCcEEEEE
Q 037028 321 QAKDINVEDGEVLVMNSILELHCVVKESRGALNSVLQRL-HQLSPKVVMLV 370 (503)
Q Consensus 321 ~~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~I-r~L~Pkvvvlv 370 (503)
.... ...-+.++. ...+|+..+ ...+|+.+ +.|+|.-++++
T Consensus 106 ~~~~--~~~~D~i~~--~~~l~~~~~-----~~~~l~~~~~~L~~gG~l~i 147 (224)
T TIGR01983 106 AEKG--AKSFDVVTC--MEVLEHVPD-----PQAFIRACAQLLKPGGILFF 147 (224)
T ss_pred hcCC--CCCccEEEe--hhHHHhCCC-----HHHHHHHHHHhcCCCcEEEE
Confidence 2111 112244444 334566542 24566655 56788755544
No 89
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=26.09 E-value=62 Score=33.02 Aligned_cols=26 Identities=19% Similarity=0.228 Sum_probs=18.4
Q ss_pred cCCceeEEeeeccccCCCCccchhhhHHHHhcCC
Q 037028 238 EGESLVHVVDLGMTLGLPHGRQWHSLMQSLVNRS 271 (503)
Q Consensus 238 ~g~~~VHIVDfgi~~G~~~G~QWpsLiqaLA~R~ 271 (503)
.|.+.||||||| .+ |+ .+|..++.-.
T Consensus 50 ~Ga~~lHvVDLg------~~-n~-~~i~~i~~~~ 75 (253)
T TIGR02129 50 DGVKGCHVIMLG------PN-ND-DAAKEALHAY 75 (253)
T ss_pred cCCCEEEEEECC------CC-cH-HHHHHHHHhC
Confidence 589999999995 34 66 5566666543
No 90
>cd01822 Lysophospholipase_L1_like Lysophospholipase L1-like subgroup of SGNH-hydrolases. The best characterized member in this family is TesA, an E. coli periplasmic protein with thioesterase, esterase, arylesterase, protease and lysophospholipase activity.
Probab=24.99 E-value=5e+02 Score=23.20 Aligned_cols=21 Identities=10% Similarity=0.197 Sum_probs=15.9
Q ss_pred hHHHHHHHHHhcCCcEEEEEe
Q 037028 351 ALNSVLQRLHQLSPKVVMLVE 371 (503)
Q Consensus 351 ~~~~~L~~Ir~L~PkvvvlvE 371 (503)
.+..+++.+|+-+++++++.-
T Consensus 89 ~l~~li~~~~~~~~~vil~~~ 109 (177)
T cd01822 89 NLRQMIETAQARGAPVLLVGM 109 (177)
T ss_pred HHHHHHHHHHHCCCeEEEEec
Confidence 356788888888888887753
No 91
>PTZ00346 histone deacetylase; Provisional
Probab=24.83 E-value=48 Score=36.30 Aligned_cols=60 Identities=10% Similarity=0.096 Sum_probs=36.2
Q ss_pred cEEEEEeccccccccccc-------cchHHHHHHHHHhcCCcEEEEEeecCCCCCCchHHHHHHHHHHHHHHHhh
Q 037028 331 EVLVMNSILELHCVVKES-------RGALNSVLQRLHQLSPKVVMLVEQDSSHNGPFFLGRFMEALHYYSAIFDS 398 (503)
Q Consensus 331 EaLaVN~~~~Lh~l~~es-------~~~~~~~L~~Ir~L~PkvvvlvE~ea~~ns~~F~~RF~eAL~yYsAlFDS 398 (503)
+.|+|.|-+=-|. .+. ......+.+.+++++.+++++.|..= |- ....+++.|..+++--
T Consensus 270 dlIvvsaG~Da~~--~DpLg~l~LT~~g~~~~~~~l~~~~~plv~vleGGY--~~----~~lar~w~~~t~~l~g 336 (429)
T PTZ00346 270 DAIVLQCGADSLA--GDRLGLLNLSSFGHGQCVQAVRDLGIPMLALGGGGY--TI----RNVAKLWAYETSILTG 336 (429)
T ss_pred CEEEEECCccCCC--CCCCCCceeCHHHHHHHHHHHHhcCCCEEEEeCCcC--Cc----cHHHHHHHHHHHHHcC
Confidence 6777777653332 111 11234577888888888888766543 32 3366788888877543
No 92
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=24.12 E-value=60 Score=34.14 Aligned_cols=132 Identities=20% Similarity=0.306 Sum_probs=70.6
Q ss_pred CCceeEEeeeccccCCCCccchhhhHHHH--------hcCCCC----CCCcEEEeeecCC-----chhHHHHH---HHHH
Q 037028 239 GESLVHVVDLGMTLGLPHGRQWHSLMQSL--------VNRSGK----VPKRLKITGVGNC-----SERLGEIG---DELK 298 (503)
Q Consensus 239 g~~~VHIVDfgi~~G~~~G~QWpsLiqaL--------A~R~gg----pP~~LRITgI~~~-----~~~l~~tg---~rL~ 298 (503)
+.+..||+-+|-|.| .--..|--.+ +..+.+ +++.|.||.|+.- .+.|+.+- .-+.
T Consensus 84 ~~~~~~VlCIGGGAG----AElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~s 159 (315)
T PF11312_consen 84 EKKSLRVLCIGGGAG----AELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLS 159 (315)
T ss_pred cccCceEEEECCChH----HHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCcc
Confidence 345689999997643 3333332222 223332 3347999999843 22333321 1223
Q ss_pred HHHhhCC--------CcEEEeeecccccccCcccc-cc-cCCcEEEEEeccccccccccccchHHHHHHHHHhcCCc--E
Q 037028 299 RYADGLK--------LNFEFLAVEKSLETLQAKDI-NV-EDGEVLVMNSILELHCVVKESRGALNSVLQRLHQLSPK--V 366 (503)
Q Consensus 299 ~fA~~lg--------ipFeF~~v~~~le~l~~~~l-~~-~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~Ir~L~Pk--v 366 (503)
++|...+ +..+|. ..++-.+..+.+ .+ .+.....|-.+|.|+-|-.++.+....||..+-+.-|. +
T Consensus 160 k~a~~~~~~~~~~~~~~~~F~--~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~Gsl 237 (315)
T PF11312_consen 160 KYASAANWPLIEPDRFNVSFT--QQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSL 237 (315)
T ss_pred ccccccccccCCccceeeeEE--ecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcE
Confidence 3333222 222232 122222333232 12 33367888899999999888766666788888665553 6
Q ss_pred EEEEeecCCC
Q 037028 367 VMLVEQDSSH 376 (503)
Q Consensus 367 vvlvE~ea~~ 376 (503)
+.+||--.+.
T Consensus 238 LLVvDSpGSY 247 (315)
T PF11312_consen 238 LLVVDSPGSY 247 (315)
T ss_pred EEEEcCCCCc
Confidence 6677765554
No 93
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=23.96 E-value=5.8e+02 Score=27.66 Aligned_cols=109 Identities=18% Similarity=0.241 Sum_probs=59.7
Q ss_pred hhhcCCceeEEeeeccccCCCCccchhhhHHHHhcCCCCCCCcEEEeeecCCchhHHHHHHHHHHHHhhCCCc-EEEeee
Q 037028 235 EAFEGESLVHVVDLGMTLGLPHGRQWHSLMQSLVNRSGKVPKRLKITGVGNCSERLGEIGDELKRYADGLKLN-FEFLAV 313 (503)
Q Consensus 235 EA~~g~~~VHIVDfgi~~G~~~G~QWpsLiqaLA~R~ggpP~~LRITgI~~~~~~l~~tg~rL~~fA~~lgip-FeF~~v 313 (503)
+.+.-...-+|+|+|-|- |. +--.||.+. -+++||+.+.+.++.+.+++ +..|+. .+|..
T Consensus 291 ~~l~~~~~~~VLDlgcGt----G~----~sl~la~~~------~~V~gvD~s~~al~~A~~n~----~~~~~~~v~~~~- 351 (443)
T PRK13168 291 EWLDPQPGDRVLDLFCGL----GN----FTLPLARQA------AEVVGVEGVEAMVERARENA----RRNGLDNVTFYH- 351 (443)
T ss_pred HHhcCCCCCEEEEEeccC----CH----HHHHHHHhC------CEEEEEeCCHHHHHHHHHHH----HHcCCCceEEEE-
Confidence 333333445899999653 32 333466542 37999998887787776554 334442 44532
Q ss_pred cccccccCcc-cccccCCcEEEEEeccccccccccccchHHHHHHHHHhcCCcEEEEEeec
Q 037028 314 EKSLETLQAK-DINVEDGEVLVMNSILELHCVVKESRGALNSVLQRLHQLSPKVVMLVEQD 373 (503)
Q Consensus 314 ~~~le~l~~~-~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~Ir~L~PkvvvlvE~e 373 (503)
.++++.-.. .+.-..-++|++|=.. .....++..+.+++|+-++.+.-+
T Consensus 352 -~d~~~~l~~~~~~~~~fD~Vi~dPPr----------~g~~~~~~~l~~~~~~~ivyvSCn 401 (443)
T PRK13168 352 -ANLEEDFTDQPWALGGFDKVLLDPPR----------AGAAEVMQALAKLGPKRIVYVSCN 401 (443)
T ss_pred -eChHHhhhhhhhhcCCCCEEEECcCC----------cChHHHHHHHHhcCCCeEEEEEeC
Confidence 233221110 0111112556554332 123467788888999988887654
No 94
>KOG1165 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]
Probab=23.82 E-value=43 Score=35.96 Aligned_cols=12 Identities=33% Similarity=0.991 Sum_probs=10.2
Q ss_pred CCceeEEeeecc
Q 037028 239 GESLVHVVDLGM 250 (503)
Q Consensus 239 g~~~VHIVDfgi 250 (503)
.+..|||||||+
T Consensus 164 ~~n~IhiiDFGm 175 (449)
T KOG1165|consen 164 DANVIHIIDFGM 175 (449)
T ss_pred CCceEEEEeccc
Confidence 457899999996
No 95
>COG4952 Predicted sugar isomerase [Cell envelope biogenesis, outer membrane]
Probab=23.76 E-value=4e+02 Score=28.13 Aligned_cols=116 Identities=23% Similarity=0.285 Sum_probs=64.7
Q ss_pred HHHHHHHhhCCCcEEEeeecccccccCcccccccCCcEEEEEeccccccccccc-cchHHHHHHHH---HhcCCcEEEEE
Q 037028 295 DELKRYADGLKLNFEFLAVEKSLETLQAKDINVEDGEVLVMNSILELHCVVKES-RGALNSVLQRL---HQLSPKVVMLV 370 (503)
Q Consensus 295 ~rL~~fA~~lgipFeF~~v~~~le~l~~~~l~~~~~EaLaVN~~~~Lh~l~~es-~~~~~~~L~~I---r~L~Pkvvvlv 370 (503)
++|.+||..+|+.|. ++.++ .+.-.+|...---. -.|.|--... ..+++..|..| +.+.-|++++-
T Consensus 110 ~~Lke~a~~~GL~fd--AmNsN-------tFsDa~~q~~sYKy-GSLsh~d~~tR~qAieHnlECveIg~~~GSKaltvW 179 (430)
T COG4952 110 ERLKEFASALGLGFD--AMNSN-------TFSDAPGQGHSYKY-GSLSHTDAATRRQAIEHNLECVEIGKALGSKALTVW 179 (430)
T ss_pred HHHHHHHHhcCCCcc--ccCcc-------cccCCccccccccc-ccccCccHHHHHHHHHhhHHHHHHHHhhCcceEEEE
Confidence 689999999998753 34322 11112222110000 0112211111 12334455555 78999999988
Q ss_pred eecCC-CC-CCchHHHHHHHHHHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHhHhh
Q 037028 371 EQDSS-HN-GPFFLGRFMEALHYYSAIFDSLDAMLPKYDTKRAKIEQFYFAEEIKNIV 426 (503)
Q Consensus 371 E~ea~-~n-s~~F~~RF~eAL~yYsAlFDSLda~lp~~~~eR~~iE~~~lg~eI~NiV 426 (503)
-.|.. .. ...|..+|..-+.-..++++.| |. ..|...|.-+|-|..-..|
T Consensus 180 vgDGsnfPGQ~nF~r~feRyl~sm~~iY~~l----Pa--Dw~lf~EhKmfEPAFYsTv 231 (430)
T COG4952 180 VGDGSNFPGQSNFTRAFERYLDSMKAIYAAL----PA--DWRLFTEHKMFEPAFYSTV 231 (430)
T ss_pred eccCCCCCCchhHHHHHHHHHHHHHHHHHhC----ch--hhhHHHhhhcccchhhhcc
Confidence 77754 32 3468888877666666666554 42 4678888887777665444
No 96
>PF07088 GvpD: GvpD gas vesicle protein; InterPro: IPR009788 This family consists of several archaeal GvpD gas vesicle proteins. GvpD is thought to be involved in the regulation of gas vesicle formation [,].; GO: 0005524 ATP binding
Probab=23.56 E-value=1.7e+02 Score=32.15 Aligned_cols=41 Identities=12% Similarity=0.414 Sum_probs=35.4
Q ss_pred chhhhHHHHhcCCCCCCCcEEEeeecCCchhHHHHHHHHHHHHhhCCCcEEEee
Q 037028 259 QWHSLMQSLVNRSGKVPKRLKITGVGNCSERLGEIGDELKRYADGLKLNFEFLA 312 (503)
Q Consensus 259 QWpsLiqaLA~R~ggpP~~LRITgI~~~~~~l~~tg~rL~~fA~~lgipFeF~~ 312 (503)
-|-.+|+.||.+-+.|+ .++..-..|.+||+..|+.+-|..
T Consensus 114 SWdaiieyla~~~~~~e-------------d~e~l~~dLv~lard~g~~LIlVs 154 (484)
T PF07088_consen 114 SWDAIIEYLAEEHDEPE-------------DIETLTNDLVELARDMGINLILVS 154 (484)
T ss_pred cHHHHHHHhhhhhcCcH-------------HHHHHHHHHHHHHhhcCceEEEEE
Confidence 69999999999888776 477788999999999999987753
No 97
>PF00367 PTS_EIIB: phosphotransferase system, EIIB; InterPro: IPR018113 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred to enzyme-I (EI) of PTS which in turn transfers it to a phosphoryl carrier protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease which consists of at least three structurally distinct domains (IIA, IIB, and IIC) [] which can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA) carries the first permease-specific phoshorylation site, a histidine, which is phosphorylated by phospho-HPr. The second domain (IIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the permease. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate in a process catalyzed by the IIC domain; this process is coupled to the transmembrane transport of the sugar. This entry covers the phosphorylation site of EIIB domains. ; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity; PDB: 3IPJ_B 3BP3_A 1O2F_B 3BP8_C 1IBA_A.
Probab=23.47 E-value=1.5e+02 Score=21.10 Aligned_cols=21 Identities=33% Similarity=0.365 Sum_probs=17.5
Q ss_pred HHHHhhhcCCceeEEeeeccc
Q 037028 231 ASILEAFEGESLVHVVDLGMT 251 (503)
Q Consensus 231 qAILEA~~g~~~VHIVDfgi~ 251 (503)
+.|++++.|.+.|-=||--++
T Consensus 2 ~~il~~lGG~~NI~~v~~C~T 22 (35)
T PF00367_consen 2 KQILEALGGKENIKSVTNCAT 22 (35)
T ss_dssp HHHHHHCTTCCCEEEEEE-SS
T ss_pred hHHHHHhCCHHHHHHHhcCcc
Confidence 579999999999998888764
No 98
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=23.16 E-value=6.7e+02 Score=24.04 Aligned_cols=78 Identities=21% Similarity=0.279 Sum_probs=42.6
Q ss_pred ceeEEeeeccccCCCCccchhhhHHHHhcCCCCCCCcEEEeeecCCchhHHHHHHHHHHHHhhCCCc-EEEeeecccccc
Q 037028 241 SLVHVVDLGMTLGLPHGRQWHSLMQSLVNRSGKVPKRLKITGVGNCSERLGEIGDELKRYADGLKLN-FEFLAVEKSLET 319 (503)
Q Consensus 241 ~~VHIVDfgi~~G~~~G~QWpsLiqaLA~R~ggpP~~LRITgI~~~~~~l~~tg~rL~~fA~~lgip-FeF~~v~~~le~ 319 (503)
+..+|+|+|.|- | .+...++.+. | ..++|||+.....++.+.+++ +..|++ ++| +..++.+
T Consensus 87 ~~~~ilDig~G~----G----~~~~~l~~~~---~-~~~v~~iD~~~~~~~~a~~~~----~~~~~~~~~~--~~~d~~~ 148 (251)
T TIGR03534 87 GPLRVLDLGTGS----G----AIALALAKER---P-DARVTAVDISPEALAVARKNA----ARLGLDNVTF--LQSDWFE 148 (251)
T ss_pred CCCeEEEEeCcH----h----HHHHHHHHHC---C-CCEEEEEECCHHHHHHHHHHH----HHcCCCeEEE--EECchhc
Confidence 345899999753 3 3344445432 3 479999998876666555544 345554 444 3223221
Q ss_pred cCcccccccCCcEEEEEeccc
Q 037028 320 LQAKDINVEDGEVLVMNSILE 340 (503)
Q Consensus 320 l~~~~l~~~~~EaLaVN~~~~ 340 (503)
. +.-..=+.|+.|-.+.
T Consensus 149 ~----~~~~~fD~Vi~npPy~ 165 (251)
T TIGR03534 149 P----LPGGKFDLIVSNPPYI 165 (251)
T ss_pred c----CcCCceeEEEECCCCC
Confidence 1 1112336777776654
No 99
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=22.75 E-value=3.4e+02 Score=28.00 Aligned_cols=53 Identities=17% Similarity=0.264 Sum_probs=31.6
Q ss_pred HHhhhcCCceeEEeeeccccCCCCccchhhhHHHHhcCCCCCCCcEEEeeecCCchhHHHHHHHHHH
Q 037028 233 ILEAFEGESLVHVVDLGMTLGLPHGRQWHSLMQSLVNRSGKVPKRLKITGVGNCSERLGEIGDELKR 299 (503)
Q Consensus 233 ILEA~~g~~~VHIVDfgi~~G~~~G~QWpsLiqaLA~R~ggpP~~LRITgI~~~~~~l~~tg~rL~~ 299 (503)
|+++..-...=.|+|+|-|.| .|-..|+.+. -++++|+.+.+.++.+.+++..
T Consensus 28 Iv~~~~~~~~~~VLEIG~G~G--------~LT~~Ll~~~------~~V~avEiD~~li~~l~~~~~~ 80 (294)
T PTZ00338 28 IVEKAAIKPTDTVLEIGPGTG--------NLTEKLLQLA------KKVIAIEIDPRMVAELKKRFQN 80 (294)
T ss_pred HHHhcCCCCcCEEEEecCchH--------HHHHHHHHhC------CcEEEEECCHHHHHHHHHHHHh
Confidence 333333333346999996432 4556666542 2689999887666666655543
No 100
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=22.60 E-value=7.2e+02 Score=24.20 Aligned_cols=35 Identities=14% Similarity=0.081 Sum_probs=23.1
Q ss_pred eEEeeeccccCCCCccchhhhHHHHhcCCCCCCCcEEEeeecCCchhHH
Q 037028 243 VHVVDLGMTLGLPHGRQWHSLMQSLVNRSGKVPKRLKITGVGNCSERLG 291 (503)
Q Consensus 243 VHIVDfgi~~G~~~G~QWpsLiqaLA~R~ggpP~~LRITgI~~~~~~l~ 291 (503)
-.|+|+|-|-| .- ...||.+ | ..+|||+.+...++
T Consensus 36 ~rvLd~GCG~G--~d------a~~LA~~-G-----~~V~gvD~S~~Ai~ 70 (213)
T TIGR03840 36 ARVFVPLCGKS--LD------LAWLAEQ-G-----HRVLGVELSEIAVE 70 (213)
T ss_pred CeEEEeCCCch--hH------HHHHHhC-C-----CeEEEEeCCHHHHH
Confidence 48999997543 22 2335654 2 68999998866665
No 101
>PF02283 CobU: Cobinamide kinase / cobinamide phosphate guanyltransferase; InterPro: IPR003203 This family is composed of a group of bifunctional cobalbumin biosynthesis enzymes which display cobinamide kinase and cobinamide phosphate guanyltransferase activity. The crystal structure of the enzyme reveals the molecule to be a trimer with a propeller-like shape [].; GO: 0000166 nucleotide binding, 0043752 adenosylcobinamide kinase activity, 0051188 cofactor biosynthetic process; PDB: 1CBU_C 1C9K_B.
Probab=22.36 E-value=3.1e+02 Score=25.92 Aligned_cols=122 Identities=13% Similarity=0.163 Sum_probs=59.9
Q ss_pred hhhHHHHhcCCCCCCCcEEEeeecCCchhHHHHHHHHHHHHhhCCCcEEEeeecccccccCcccccccCCcEEEEEecc-
Q 037028 261 HSLMQSLVNRSGKVPKRLKITGVGNCSERLGEIGDELKRYADGLKLNFEFLAVEKSLETLQAKDINVEDGEVLVMNSIL- 339 (503)
Q Consensus 261 psLiqaLA~R~ggpP~~LRITgI~~~~~~l~~tg~rL~~fA~~lgipFeF~~v~~~le~l~~~~l~~~~~EaLaVN~~~- 339 (503)
..+=+.|+...++|+ +=|......=+++.+|..++=+.. |-.|..+.... ++....-...++.+|.|-|.-
T Consensus 12 S~~Ae~la~~~~~~~-----~YiAT~~~~D~em~~RI~~H~~~R--~~~w~tiE~~~-~l~~~~~~~~~~~~vLlDclt~ 83 (167)
T PF02283_consen 12 SSFAERLALSFGGPV-----TYIATARPFDEEMRERIARHRQRR--PKGWITIEEPR-DLAEALEELSPGDVVLLDCLTL 83 (167)
T ss_dssp HHHHHHHHTS--SCE-----EEEESSHHHHHHHHHHHHHHHHHS--STCEEEEE-SS--GGGTS-TTS-T-EEEEE-HHH
T ss_pred HHHHHHHHHhcCCCc-----EEEeCCCCCCHHHHHHHHHHHHhC--CCCcEEEecch-hHHHHHHHhccCCeEEEeCHHH
Confidence 455677776544332 223322223467888888888888 55666665322 222221223447899999954
Q ss_pred cccccccccc-------chHHHHHHHHHhcCCcEEEEEeecCC--CCCCchHHHHHHHHH
Q 037028 340 ELHCVVKESR-------GALNSVLQRLHQLSPKVVMLVEQDSS--HNGPFFLGRFMEALH 390 (503)
Q Consensus 340 ~Lh~l~~es~-------~~~~~~L~~Ir~L~PkvvvlvE~ea~--~ns~~F~~RF~eAL~ 390 (503)
.|-+++.... ..+..++..++..++++|+++++=.. ........+|++.+-
T Consensus 84 wl~n~l~~~~~~~~~~~~~i~~~l~~l~~~~~~lViVsnEVG~GiVP~~~~~R~yrd~lG 143 (167)
T PF02283_consen 84 WLANLLFAEEDDEEDILEEIERLLEALRERNADLVIVSNEVGWGIVPMDPLTRRYRDLLG 143 (167)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHHHH--SEEEEEEE---SS---SSHHHHHHHHHHH
T ss_pred HHHHHHHhccCcHHHHHHHHHHHHHHHHccCCCEEEEEcCCCCCCCCCCHHHHHHHHHHH
Confidence 3344332211 13456888888888888777754322 112235555555543
No 102
>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein
Probab=21.94 E-value=6.2e+02 Score=27.57 Aligned_cols=54 Identities=20% Similarity=0.280 Sum_probs=40.4
Q ss_pred h-hhhHHHHhcCCCCCCCcEEEeeecCC-chhHHHHHHHHHHHHhhCCCcEEEeeec
Q 037028 260 W-HSLMQSLVNRSGKVPKRLKITGVGNC-SERLGEIGDELKRYADGLKLNFEFLAVE 314 (503)
Q Consensus 260 W-psLiqaLA~R~ggpP~~LRITgI~~~-~~~l~~tg~rL~~fA~~lgipFeF~~v~ 314 (503)
| |.||++|+.+...-| --.|+-++-. .++++.++.-..+.++..|.+++|..-.
T Consensus 12 ~tp~li~~l~~~~~~l~-~~ei~L~Did~~~rl~~v~~~~~~~~~~~~~~~~v~~t~ 67 (419)
T cd05296 12 YTPELIEGLIRRYEELP-VTELVLVDIDEEEKLEIVGALAKRMVKKAGLPIKVHLTT 67 (419)
T ss_pred hHHHHHHHHHhccccCC-CCEEEEecCChHHHHHHHHHHHHHHHHhhCCCeEEEEeC
Confidence 5 588999999754333 2445555555 7889999999999999999998887654
No 103
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=21.92 E-value=2e+02 Score=26.62 Aligned_cols=116 Identities=21% Similarity=0.225 Sum_probs=60.3
Q ss_pred hhHHHHhhhcCCceeEEeeeccccCCCCccchhhhHHHHhcCCCCCCCcEEEeeecCCchhHHHHHHHHHHHHhhCCCcE
Q 037028 229 ANASILEAFEGESLVHVVDLGMTLGLPHGRQWHSLMQSLVNRSGKVPKRLKITGVGNCSERLGEIGDELKRYADGLKLNF 308 (503)
Q Consensus 229 ANqAILEA~~g~~~VHIVDfgi~~G~~~G~QWpsLiqaLA~R~ggpP~~LRITgI~~~~~~l~~tg~rL~~fA~~lgipF 308 (503)
+-..+++.+...+.=+|+|+|.|.| --+ -.|+.+ + | ..++|+++.....++.+.+.+ +..++.-
T Consensus 19 ~t~lL~~~l~~~~~~~vLDlG~G~G------~i~--~~la~~--~-~-~~~v~~vDi~~~a~~~a~~n~----~~n~~~~ 82 (170)
T PF05175_consen 19 GTRLLLDNLPKHKGGRVLDLGCGSG------VIS--LALAKR--G-P-DAKVTAVDINPDALELAKRNA----ERNGLEN 82 (170)
T ss_dssp HHHHHHHHHHHHTTCEEEEETSTTS------HHH--HHHHHT--S-T-CEEEEEEESBHHHHHHHHHHH----HHTTCTT
T ss_pred HHHHHHHHHhhccCCeEEEecCChH------HHH--HHHHHh--C-C-CCEEEEEcCCHHHHHHHHHHH----HhcCccc
Confidence 3445666666556667999997543 122 234443 2 3 589999998877776665554 4555552
Q ss_pred EEeeeccc-ccccCcccccccCCcEEEEEeccccccccccccchHHHHHH-HHHhcCCcEEE
Q 037028 309 EFLAVEKS-LETLQAKDINVEDGEVLVMNSILELHCVVKESRGALNSVLQ-RLHQLSPKVVM 368 (503)
Q Consensus 309 eF~~v~~~-le~l~~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~-~Ir~L~Pkvvv 368 (503)
.+.+..+ ++.+.. ..=+.++.|=.+ |.-.++.......|++ .-+-|+|.-..
T Consensus 83 -v~~~~~d~~~~~~~-----~~fD~Iv~NPP~--~~~~~~~~~~~~~~i~~a~~~Lk~~G~l 136 (170)
T PF05175_consen 83 -VEVVQSDLFEALPD-----GKFDLIVSNPPF--HAGGDDGLDLLRDFIEQARRYLKPGGRL 136 (170)
T ss_dssp -EEEEESSTTTTCCT-----TCEEEEEE---S--BTTSHCHHHHHHHHHHHHHHHEEEEEEE
T ss_pred -cccccccccccccc-----cceeEEEEccch--hcccccchhhHHHHHHHHHHhccCCCEE
Confidence 3333322 222221 122567777663 4333222223345554 44678997544
No 104
>PRK07402 precorrin-6B methylase; Provisional
Probab=21.80 E-value=2.5e+02 Score=26.42 Aligned_cols=63 Identities=13% Similarity=0.079 Sum_probs=37.5
Q ss_pred hhHhhhHHHHhhhcCCceeEEeeeccccCCCCccchhhhHHHHhcCCCCCCCcEEEeeecCCchhHHHHHHHHHH
Q 037028 225 GHFVANASILEAFEGESLVHVVDLGMTLGLPHGRQWHSLMQSLVNRSGKVPKRLKITGVGNCSERLGEIGDELKR 299 (503)
Q Consensus 225 ahftANqAILEA~~g~~~VHIVDfgi~~G~~~G~QWpsLiqaLA~R~ggpP~~LRITgI~~~~~~l~~tg~rL~~ 299 (503)
..--..+.+++.+.-...=.|+|+|-|.| . +. ..++... | .-++|+|+.+.+.++.+.+++.+
T Consensus 24 t~~~v~~~l~~~l~~~~~~~VLDiG~G~G----~-~~---~~la~~~---~-~~~V~~vD~s~~~~~~a~~n~~~ 86 (196)
T PRK07402 24 TKREVRLLLISQLRLEPDSVLWDIGAGTG----T-IP---VEAGLLC---P-KGRVIAIERDEEVVNLIRRNCDR 86 (196)
T ss_pred CHHHHHHHHHHhcCCCCCCEEEEeCCCCC----H-HH---HHHHHHC---C-CCEEEEEeCCHHHHHHHHHHHHH
Confidence 34444555666665344446999997543 2 22 2233321 2 26899999887777776666644
No 105
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=21.67 E-value=89 Score=31.05 Aligned_cols=51 Identities=20% Similarity=0.368 Sum_probs=32.0
Q ss_pred cCCceeEEeeeccccCCCCccchhhhHHHHhcCCCCCCCcEEEeeecCCchhHHHHHHHH
Q 037028 238 EGESLVHVVDLGMTLGLPHGRQWHSLMQSLVNRSGKVPKRLKITGVGNCSERLGEIGDEL 297 (503)
Q Consensus 238 ~g~~~VHIVDfgi~~G~~~G~QWpsLiqaLA~R~ggpP~~LRITgI~~~~~~l~~tg~rL 297 (503)
.|.+.|||||++-.. +.+.+. .+|..++..-+. +|+ ++-....++++.+-|
T Consensus 44 ~g~~~l~ivDLd~~~--g~~~n~-~~i~~i~~~~~~-----pv~-vgGGirs~edv~~~l 94 (241)
T PRK14024 44 DGAEWIHLVDLDAAF--GRGSNR-ELLAEVVGKLDV-----KVE-LSGGIRDDESLEAAL 94 (241)
T ss_pred CCCCEEEEEeccccC--CCCccH-HHHHHHHHHcCC-----CEE-EcCCCCCHHHHHHHH
Confidence 688999999998543 366666 788888876432 222 443344455554444
No 106
>PRK02399 hypothetical protein; Provisional
Probab=21.65 E-value=7.7e+02 Score=27.05 Aligned_cols=142 Identities=21% Similarity=0.273 Sum_probs=88.5
Q ss_pred HhccchhhhhHhhhHHHHhhhcCCc--------eeEEeeeccccCCCCccchhhhHHHHhcCC--CCCCCcEEEeeecCC
Q 037028 217 EICPQIQFGHFVANASILEAFEGES--------LVHVVDLGMTLGLPHGRQWHSLMQSLVNRS--GKVPKRLKITGVGNC 286 (503)
Q Consensus 217 e~~P~~kfahftANqAILEA~~g~~--------~VHIVDfgi~~G~~~G~QWpsLiqaLA~R~--ggpP~~LRITgI~~~ 286 (503)
|++-++-=+-+.|-..=|+|..... .+-.|+|| .|.++=+.+..|+ ...|. +|-+...
T Consensus 247 Ev~d~l~GGv~sagp~Rl~Aa~~~gIP~Vvs~GalDmVnFg---------~~~tvPe~f~~R~~~~HNp~---vTlmRTt 314 (406)
T PRK02399 247 EVCDELFGGVLAAGPDRLEAAARTGIPQVVSPGALDMVNFG---------APDTVPEKFRGRLLYKHNPQ---VTLMRTT 314 (406)
T ss_pred HHHHHHhCcCccCCccHHHHHHHcCCCEEecCCceeeeecC---------CcccccHhhcCCcceecCCc---ceeeecC
Confidence 4444444455566666666664332 23445665 6777778888886 33442 5667777
Q ss_pred chhHHHHHHHHHHHHhhCCCcEEEeeecccccccCcccccccCCcEEEEEeccccccccccccchHHHHHHHHHhcCCcE
Q 037028 287 SERLGEIGDELKRYADGLKLNFEFLAVEKSLETLQAKDINVEDGEVLVMNSILELHCVVKESRGALNSVLQRLHQLSPKV 366 (503)
Q Consensus 287 ~~~l~~tg~rL~~fA~~lgipFeF~~v~~~le~l~~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~Ir~L~Pkv 366 (503)
.++.+++|+.+.+--....=|..|-.-..-+..++ .+|+. +| .+.+...|++.+++.=+.-
T Consensus 315 ~eE~~~~g~~ia~kLn~a~gpv~vllP~~G~S~~D------~~G~~--------f~-----Dpead~alf~~l~~~l~~~ 375 (406)
T PRK02399 315 PEENRQIGRWIAEKLNRAKGPVAFLIPLGGVSALD------RPGQP--------FH-----DPEADAAFFDALEETVTET 375 (406)
T ss_pred HHHHHHHHHHHHHHHhcCCCCeEEEEeCCCCcccc------CCCCC--------cc-----ChhHHHHHHHHHHHhCCCC
Confidence 78888888888766666555777654333333333 23432 11 1234567888886543555
Q ss_pred EEEEeecCCCCCCchHHHHHHHH
Q 037028 367 VMLVEQDSSHNGPFFLGRFMEAL 389 (503)
Q Consensus 367 vvlvE~ea~~ns~~F~~RF~eAL 389 (503)
+.+.|-+.+-|+|.|.....+.|
T Consensus 376 ~~v~~~~~hIND~~FA~a~~~~l 398 (406)
T PRK02399 376 RRLIEVPAHINDPEFAEAAVEAF 398 (406)
T ss_pred ceEEECCCCCCCHHHHHHHHHHH
Confidence 77899999999999988777666
No 107
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=21.40 E-value=7.2e+02 Score=23.76 Aligned_cols=104 Identities=19% Similarity=0.236 Sum_probs=52.6
Q ss_pred CCceeEEeeeccccCCCCccchhhhHHHHhcCCCCCCCcEEEeeecCCchhHHHHHHHHHHHHhhCCCcEEEeeeccccc
Q 037028 239 GESLVHVVDLGMTLGLPHGRQWHSLMQSLVNRSGKVPKRLKITGVGNCSERLGEIGDELKRYADGLKLNFEFLAVEKSLE 318 (503)
Q Consensus 239 g~~~VHIVDfgi~~G~~~G~QWpsLiqaLA~R~ggpP~~LRITgI~~~~~~l~~tg~rL~~fA~~lgipFeF~~v~~~le 318 (503)
.....+|+|+|.+ .|. +...++.+ + .++|+|+.+...++.+.+++. ..++..+|... +++
T Consensus 46 ~~~~~~vLdiG~G----~G~----~~~~l~~~-~-----~~v~~iD~s~~~~~~a~~~~~----~~~~~~~~~~~--~~~ 105 (233)
T PRK05134 46 GLFGKRVLDVGCG----GGI----LSESMARL-G-----ADVTGIDASEENIEVARLHAL----ESGLKIDYRQT--TAE 105 (233)
T ss_pred CCCCCeEEEeCCC----CCH----HHHHHHHc-C-----CeEEEEcCCHHHHHHHHHHHH----HcCCceEEEec--CHH
Confidence 3346689999964 232 33445543 2 469999987766665555442 33445555432 232
Q ss_pred ccCcccccccCCcEEEEEeccccccccccccchHHHHHHHH-HhcCCcEEEEEe
Q 037028 319 TLQAKDINVEDGEVLVMNSILELHCVVKESRGALNSVLQRL-HQLSPKVVMLVE 371 (503)
Q Consensus 319 ~l~~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~I-r~L~PkvvvlvE 371 (503)
++... ....=+.++ +..-++|+.+ ...+|+.+ +.|+|.-.+++.
T Consensus 106 ~~~~~--~~~~fD~Ii--~~~~l~~~~~-----~~~~l~~~~~~L~~gG~l~v~ 150 (233)
T PRK05134 106 ELAAE--HPGQFDVVT--CMEMLEHVPD-----PASFVRACAKLVKPGGLVFFS 150 (233)
T ss_pred Hhhhh--cCCCccEEE--EhhHhhccCC-----HHHHHHHHHHHcCCCcEEEEE
Confidence 22110 001113333 3344566543 23455554 567887544443
No 108
>PF01220 DHquinase_II: Dehydroquinase class II; InterPro: IPR001874 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. Class-II enzymes are homododecameric enzymes of about 17 kDa. They are found in some bacteria such as actinomycetales [, ] and some fungi where they act in a catabolic pathway that allows the use of quinic acid as a carbon source.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 3N8K_J 3N7A_I 3N87_F 3N8N_H 3N86_N 1H0S_A 3N59_J 1H05_A 1H0R_A 2Y71_A ....
Probab=21.27 E-value=1.4e+02 Score=27.84 Aligned_cols=53 Identities=19% Similarity=0.295 Sum_probs=34.7
Q ss_pred hhHHHHHHHHHHHHhhCCCcEEEeeeccc---ccccCcccccccCCcEEEEEecccccc
Q 037028 288 ERLGEIGDELKRYADGLKLNFEFLAVEKS---LETLQAKDINVEDGEVLVMNSILELHC 343 (503)
Q Consensus 288 ~~l~~tg~rL~~fA~~lgipFeF~~v~~~---le~l~~~~l~~~~~EaLaVN~~~~Lh~ 343 (503)
..++++-+++.+.|+.+|+.++|..=... ++-+... ...-+.+++|---.=|.
T Consensus 25 ~tl~~i~~~~~~~a~~~g~~v~~~QSN~EGelid~I~~a---~~~~dgiIINpga~tht 80 (140)
T PF01220_consen 25 TTLEDIEQKCKETAAELGVEVEFFQSNHEGELIDWIHEA---RDDVDGIIINPGAYTHT 80 (140)
T ss_dssp SHHHHHHHHHHHHHHHTTEEEEEEE-SSHHHHHHHHHHH---TCTTSEEEEE-GGGGHT
T ss_pred CCHHHHHHHHHHHHHHCCCeEEEEecCCHHHHHHHHHHH---HhhCCEEEEccchhccc
Confidence 47899999999999999999999753211 1112111 12358999998654443
No 109
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=21.18 E-value=97 Score=31.78 Aligned_cols=27 Identities=22% Similarity=0.304 Sum_probs=19.8
Q ss_pred cCCceeEEeeeccccCCCCccchhhhHHHHhc
Q 037028 238 EGESLVHVVDLGMTLGLPHGRQWHSLMQSLVN 269 (503)
Q Consensus 238 ~g~~~VHIVDfgi~~G~~~G~QWpsLiqaLA~ 269 (503)
.|.+.+||||||- +.+.+ -.+|.+++.
T Consensus 55 ~Ga~~lHvVDLdg----g~~~n-~~~i~~i~~ 81 (262)
T PLN02446 55 DGLTGGHVIMLGA----DDASL-AAALEALRA 81 (262)
T ss_pred CCCCEEEEEECCC----CCccc-HHHHHHHHh
Confidence 5899999999984 35566 455666766
No 110
>PF11455 DUF3018: Protein of unknown function (DUF3018); InterPro: IPR021558 This is a bacterial family of uncharacterised proteins.
Probab=20.92 E-value=53 Score=26.78 Aligned_cols=21 Identities=43% Similarity=0.643 Sum_probs=17.6
Q ss_pred cchhhHHHHHhcCCceeecCC
Q 037028 438 ERVDQWRRRMSRAGFQSVPIK 458 (503)
Q Consensus 438 E~~~~Wr~rm~~aGF~~~~ls 458 (503)
|+..+-|++|..+|++|+.+-
T Consensus 3 ~RV~khR~~lRa~GLRPVqiW 23 (65)
T PF11455_consen 3 ERVRKHRERLRAAGLRPVQIW 23 (65)
T ss_pred HHHHHHHHHHHHcCCCcceee
Confidence 455667899999999999994
No 111
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=20.66 E-value=1.9e+02 Score=31.66 Aligned_cols=60 Identities=15% Similarity=0.206 Sum_probs=43.5
Q ss_pred hhhHHHHhcCCCCCCCcEEEeeecCCchhHHHHHHHHHHHHhhCCCcEEEeeecccccccC
Q 037028 261 HSLMQSLVNRSGKVPKRLKITGVGNCSERLGEIGDELKRYADGLKLNFEFLAVEKSLETLQ 321 (503)
Q Consensus 261 psLiqaLA~R~ggpP~~LRITgI~~~~~~l~~tg~rL~~fA~~lgipFeF~~v~~~le~l~ 321 (503)
|.||+.|..++..-| --.|+-++-..+.++.++....++++..|.+++|..-.+.-|.|+
T Consensus 14 p~li~~l~~~~~~l~-~~ei~L~DId~~rl~~v~~l~~~~~~~~g~~~~v~~Ttdr~eAl~ 73 (437)
T cd05298 14 PGIVKSLLDRKEDFP-LRELVLYDIDAERQEKVAEAVKILFKENYPEIKFVYTTDPEEAFT 73 (437)
T ss_pred HHHHHHHHhCcccCC-CCEEEEECCCHHHHHHHHHHHHHHHHhhCCCeEEEEECCHHHHhC
Confidence 588999999864333 244555555667888899999999999999999887654333343
Done!