BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037030
(612 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1D5R|A Chain A, Crystal Structure Of The Pten Tumor Suppressor
Length = 324
Score = 197 bits (502), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 125/344 (36%), Positives = 178/344 (51%), Gaps = 51/344 (14%)
Query: 134 VVSQNKRRYQDGGFDLDMTYITENIIAMGFPAGDMSSGFFGYVEGFYRNHMEEVIKFFET 193
+VS+NKRRYQ+ GFDLD+TYI NIIAMGFPA + EG YRN++++V++F ++
Sbjct: 2 IVSRNKRRYQEDGFDLDLTYIYPNIIAMGFPAERL--------EGVYRNNIDDVVRFLDS 53
Query: 194 YHKDKYKVYNLCSERLYDASLFEGRCVASFPFDDHNCPPIQLITSFCHSAYSWLKEDIEN 253
HK+ YK+YNLC+ER YD + F R VA +PF+DHN P ++LI FC WL ED +
Sbjct: 54 KHKNHYKIYNLCAERHYDTAKFNCR-VAQYPFEDHNPPQLELIKPFCEDLDQWLSEDDNH 112
Query: 254 VVVVHCKAGMARTGLMISSLLLYLKFFPTAEESIDYYNQKRCVDGKGLVLPSQIRYVKYF 313
V +HCKAG RTG+MI + LL+ F A+E++D+Y + R D KG+ +PSQ RYV Y+
Sbjct: 113 VAAIHCKAGKGRTGVMICAYLLHRGKFLKAQEALDFYGEVRTRDKKGVTIPSQRRYVYYY 172
Query: 314 ERILTYFNGENQPGRRCMLRGFRLHRCPYW----IRPHITVSDHNGVLFSSKKHPRTKDL 369
+L N + + P + P V ++SS P ++
Sbjct: 173 SYLLK--NHLDYRPVALLFHKMMFETIPMFSGGTCNPQFVVCQLKVKIYSSNSGPTRRED 230
Query: 370 SPEDFWFSAPKKGVMVFALPGEPGLAELAGDFKIHFHDRQGD-------FYCWLNTTMM- 421
F F P LP + GD K+ F +Q F+ W+NT +
Sbjct: 231 KFMYFEFPQP--------LP-------VCGDIKVEFFHKQNKMLKKDKMFHFWVNTFFIP 275
Query: 422 -----ENRK-----VLNTGDLDGFDKRK---LPSPGFQVEVVLA 452
+N K L DLD +K K SP F+V++
Sbjct: 276 GPEEVDNDKEYLVLTLTKNDLDKANKDKANRYFSPNFKVKLYFT 319
>pdb|3V0J|A Chain A, Crystal Structure Of Ciona Intestinalis Voltage
Sensor-Containing Phosphatase (Ci-Vsp), Residues
241-576(C363s), Deletion Of 401-405
pdb|3V0J|B Chain B, Crystal Structure Of Ciona Intestinalis Voltage
Sensor-Containing Phosphatase (Ci-Vsp), Residues
241-576(C363s), Deletion Of 401-405
Length = 334
Score = 164 bits (416), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 85/208 (40%), Positives = 128/208 (61%), Gaps = 9/208 (4%)
Query: 127 VQVKARHVVSQNKRRYQDGGFDLDMTYITENIIAMGFPAGDMSSGFFGYVEGFYRNHMEE 186
++ +R +SQNKRRY+ GFDLD+TY+T+++IAM FP SSG + +RN + E
Sbjct: 3 MKASSRRTISQNKRRYRKDGFDLDLTYVTDHVIAMSFP----SSG----RQSLFRNPIGE 54
Query: 187 VIKFFETYHKDKYKVYNLCSERLYDASLFEGRCVASFPFDDHNCPPIQLITSFCHSAYSW 246
V +FF+T H DK+++YNLCSER YD + F+ V DDHN P + + F A W
Sbjct: 55 VSRFFKTKHPDKFRIYNLCSERGYDETKFDNH-VYRVMIDDHNVPTLVDLLKFIDDAKVW 113
Query: 247 LKEDIENVVVVHCKAGMARTGLMISSLLLYLKFFPTAEESIDYYNQKRCVDGKGLVLPSQ 306
+ D ++V+ +H K G RTG ++SS LL F TA+E+++Y+ +R +G+ SQ
Sbjct: 114 MTSDPDHVIAIHSKGGKGRTGTLVSSWLLEDGKFDTAKEALEYFGSRRTDVFQGVETASQ 173
Query: 307 IRYVKYFERILTYFNGENQPGRRCMLRG 334
IRYV YFE+I + G+ P ++ + G
Sbjct: 174 IRYVGYFEKIKKNYGGQLPPMKKLKVTG 201
>pdb|3AWF|A Chain A, Crystal Structure Of Pten-Like Domain Of Ci-Vsp (236-576)
pdb|3AWF|B Chain B, Crystal Structure Of Pten-Like Domain Of Ci-Vsp (236-576)
pdb|3AWF|C Chain C, Crystal Structure Of Pten-Like Domain Of Ci-Vsp (236-576)
Length = 346
Score = 164 bits (414), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 88/221 (39%), Positives = 132/221 (59%), Gaps = 14/221 (6%)
Query: 122 SAVKAVQVKARHVVSQNKRRYQDGGFDLDMTYITENIIAMGFPAGDMSSGFFGYVEGFYR 181
S+ + ++ +R +SQNKRRY+ GFDLD+TY+T+++IAM FP SSG + +R
Sbjct: 5 SSHQQMKASSRRTISQNKRRYRKDGFDLDLTYVTDHVIAMSFP----SSG----RQSLFR 56
Query: 182 NHMEEVIKFFETYHKDKYKVYNLCSERLYDASLFEGRCVASFPFDDHNCPPIQLITSFCH 241
N + EV +FF+T H DK+++YNLCSER YD + F+ V DDHN P + + F
Sbjct: 57 NPIGEVSRFFKTKHPDKFRIYNLCSERGYDETKFDNH-VYRVMIDDHNVPTLVDLLKFID 115
Query: 242 SAYSWLKEDIENVVVVHCKAGMARTGLMISSLLLYLKFFPTAEESIDYYNQKRCVDGKGL 301
A W+ D ++V+ +HCK G RTG ++SS LL F TA+E+++Y+ +R G
Sbjct: 116 DAKVWMTSDPDHVIAIHCKGGKGRTGTLVSSWLLEDGKFDTAKEALEYFGSRRTDFEVGD 175
Query: 302 VL-----PSQIRYVKYFERILTYFNGENQPGRRCMLRGFRL 337
V SQIRYV YFE+I + G+ P ++ + G +
Sbjct: 176 VFQGVETASQIRYVGYFEKIKKNYGGQLPPMKKLKVTGVTI 216
>pdb|3AWG|A Chain A, Crystal Structure Of Pten-Like Domain Of Ci-Vsp G356a
Mutant (248-576)
pdb|3AWG|B Chain B, Crystal Structure Of Pten-Like Domain Of Ci-Vsp G356a
Mutant (248-576)
pdb|3AWG|C Chain C, Crystal Structure Of Pten-Like Domain Of Ci-Vsp G356a
Mutant (248-576)
Length = 334
Score = 161 bits (407), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 87/208 (41%), Positives = 126/208 (60%), Gaps = 14/208 (6%)
Query: 135 VSQNKRRYQDGGFDLDMTYITENIIAMGFPAGDMSSGFFGYVEGFYRNHMEEVIKFFETY 194
+SQNKRRY+ GFDLD+TY+T+++IAM FP SSG + +RN + EV +FF+T
Sbjct: 6 ISQNKRRYRKDGFDLDLTYVTDHVIAMSFP----SSG----RQSLFRNPIGEVSRFFKTK 57
Query: 195 HKDKYKVYNLCSERLYDASLFEGRCVASFPFDDHNCPPIQLITSFCHSAYSWLKEDIENV 254
H DK+++YNLCSER YD + F+ V DDHN P + + F A W+ D ++V
Sbjct: 58 HPDKFRIYNLCSERGYDETKFDNH-VYRVMIDDHNVPTLVDLLKFIDDAKVWMTSDPDHV 116
Query: 255 VVVHCKAGMARTGLMISSLLLYLKFFPTAEESIDYYNQKRCVDGKGLVL-----PSQIRY 309
+ +HCKAG RTG ++SS LL F TA+E+++Y+ +R G V SQIRY
Sbjct: 117 IAIHCKAGKGRTGTLVSSWLLEDGKFDTAKEALEYFGSRRTDFEVGDVFQGVETASQIRY 176
Query: 310 VKYFERILTYFNGENQPGRRCMLRGFRL 337
V YFE+I + G+ P ++ + G +
Sbjct: 177 VGYFEKIKKNYGGQLPPMKKLKVTGVTI 204
>pdb|3AWE|A Chain A, Crystal Structure Of Pten-Like Domain Of Ci-Vsp (248-576)
pdb|3AWE|B Chain B, Crystal Structure Of Pten-Like Domain Of Ci-Vsp (248-576)
pdb|3AWE|C Chain C, Crystal Structure Of Pten-Like Domain Of Ci-Vsp (248-576)
Length = 334
Score = 159 bits (403), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 86/208 (41%), Positives = 125/208 (60%), Gaps = 14/208 (6%)
Query: 135 VSQNKRRYQDGGFDLDMTYITENIIAMGFPAGDMSSGFFGYVEGFYRNHMEEVIKFFETY 194
+SQNKRRY+ GFDLD+TY+T+++IAM FP SSG + +RN + EV +FF+T
Sbjct: 6 ISQNKRRYRKDGFDLDLTYVTDHVIAMSFP----SSG----RQSLFRNPIGEVSRFFKTK 57
Query: 195 HKDKYKVYNLCSERLYDASLFEGRCVASFPFDDHNCPPIQLITSFCHSAYSWLKEDIENV 254
H DK+++YNLCSER YD + F+ V DDHN P + + F A W+ D ++V
Sbjct: 58 HPDKFRIYNLCSERGYDETKFDNH-VYRVMIDDHNVPTLVDLLKFIDDAKVWMTSDPDHV 116
Query: 255 VVVHCKAGMARTGLMISSLLLYLKFFPTAEESIDYYNQKRCVDGKGLVL-----PSQIRY 309
+ +HCK G RTG ++SS LL F TA+E+++Y+ +R G V SQIRY
Sbjct: 117 IAIHCKGGKGRTGTLVSSWLLEDGKFDTAKEALEYFGSRRTDFEVGDVFQGVETASQIRY 176
Query: 310 VKYFERILTYFNGENQPGRRCMLRGFRL 337
V YFE+I + G+ P ++ + G +
Sbjct: 177 VGYFEKIKKNYGGQLPPMKKLKVTGVTI 204
>pdb|3V0D|A Chain A, Crystal Structure Of Ciona Intestinalis Voltage
Sensor-Containing Phosphatase (Ci-Vsp), Residues
241-576(C363s)
pdb|3V0D|B Chain B, Crystal Structure Of Ciona Intestinalis Voltage
Sensor-Containing Phosphatase (Ci-Vsp), Residues
241-576(C363s)
pdb|3V0F|A Chain A, Crystal Structure Of Ciona Intestinalis Voltage
Sensor-Containing Phosphatase (Ci-Vsp), Residues
241-576(C363s), Form Ii
pdb|3V0F|B Chain B, Crystal Structure Of Ciona Intestinalis Voltage
Sensor-Containing Phosphatase (Ci-Vsp), Residues
241-576(C363s), Form Ii
pdb|3V0G|A Chain A, Crystal Structure Of Ciona Intestinalis Voltage
Sensor-Containing Phosphatase (Ci-Vsp), Residues
241-576(C363s), Form Iii
pdb|3V0G|B Chain B, Crystal Structure Of Ciona Intestinalis Voltage
Sensor-Containing Phosphatase (Ci-Vsp), Residues
241-576(C363s), Form Iii
pdb|3V0G|C Chain C, Crystal Structure Of Ciona Intestinalis Voltage
Sensor-Containing Phosphatase (Ci-Vsp), Residues
241-576(C363s), Form Iii
pdb|3V0G|D Chain D, Crystal Structure Of Ciona Intestinalis Voltage
Sensor-Containing Phosphatase (Ci-Vsp), Residues
241-576(C363s), Form Iii
pdb|3V0H|A Chain A, Crystal Structure Of Ciona Intestinalis Voltage
Sensor-Containing Phosphatase (Ci-Vsp), Residues
241-576(C363s), Complexed With D-Myo-
Inositol-1,4,5-Triphosphate
pdb|3V0H|B Chain B, Crystal Structure Of Ciona Intestinalis Voltage
Sensor-Containing Phosphatase (Ci-Vsp), Residues
241-576(C363s), Complexed With D-Myo-
Inositol-1,4,5-Triphosphate
Length = 339
Score = 159 bits (401), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 86/213 (40%), Positives = 127/213 (59%), Gaps = 14/213 (6%)
Query: 127 VQVKARHVVSQNKRRYQDGGFDLDMTYITENIIAMGFPAGDMSSGFFGYVEGFYRNHMEE 186
++ +R +SQNKRRY+ GFDLD+TY+T+++IAM FP SSG + +RN + E
Sbjct: 3 MKASSRRTISQNKRRYRKDGFDLDLTYVTDHVIAMSFP----SSG----RQSLFRNPIGE 54
Query: 187 VIKFFETYHKDKYKVYNLCSERLYDASLFEGRCVASFPFDDHNCPPIQLITSFCHSAYSW 246
V +FF+T H DK+++YNLCSER YD + F+ V DDHN P + + F A W
Sbjct: 55 VSRFFKTKHPDKFRIYNLCSERGYDETKFDNH-VYRVMIDDHNVPTLVDLLKFIDDAKVW 113
Query: 247 LKEDIENVVVVHCKAGMARTGLMISSLLLYLKFFPTAEESIDYYNQKRCVDGKGLVL--- 303
+ D ++V+ +H K G RTG ++SS LL F TA+E+++Y+ +R G V
Sbjct: 114 MTSDPDHVIAIHSKGGKGRTGTLVSSWLLEDGKFDTAKEALEYFGSRRTDFEVGDVFQGV 173
Query: 304 --PSQIRYVKYFERILTYFNGENQPGRRCMLRG 334
SQIRYV YFE+I + G+ P ++ + G
Sbjct: 174 ETASQIRYVGYFEKIKKNYGGQLPPMKKLKVTG 206
>pdb|3V0I|A Chain A, Crystal Structure Of Ciona Intestinalis Voltage
Sensor-Containing Phosphatase (Ci-Vsp), Residues
256-576, E411f
Length = 324
Score = 144 bits (364), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 79/195 (40%), Positives = 117/195 (60%), Gaps = 16/195 (8%)
Query: 146 GFDLDMTYITENIIAMGFPAGDMSSGFFGYVEGFYRNHMEEVIKFFETYHKDKYKVYNLC 205
GFDLD+TY+T+++IAM FP SSG + +RN + EV +FF+T H DK+++YNLC
Sbjct: 7 GFDLDLTYVTDHVIAMSFP----SSG----RQSLFRNPIGEVSRFFKTKHPDKFRIYNLC 58
Query: 206 SERLYDASLFEGRCVASFPFDDHNCPPIQLITSFCHSAYSWLKEDIENVVVVHCKAGMAR 265
SER YD + F+ V DDHN P + + F A W+ D ++V+ +HCK G R
Sbjct: 59 SERGYDETKFDNH-VYRVMIDDHNVPTLVDLLKFIDDAKVWMTSDPDHVIAIHCKGGKGR 117
Query: 266 TGLMISSLLLYLKFFPTAEESIDYYNQKRCVD------GKGLVLPSQIRYVKYFERILTY 319
TG ++SS LL F TA+E+++Y+ +R D +G+ SQIRYV YFE+I
Sbjct: 118 TGTLVSSWLLEDGKFDTAKEALEYFGSRR-TDFEVGDVFQGVFTASQIRYVGYFEKIKKN 176
Query: 320 FNGENQPGRRCMLRG 334
+ G+ P ++ + G
Sbjct: 177 YGGQLPPMKKLKVTG 191
>pdb|3V0E|A Chain A, Crystal Structure Of Ciona Intestinalis Voltage
Sensor-Containing Phosphatase (Ci-Vsp), Residues
256-576(C363s)
Length = 324
Score = 140 bits (353), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 78/197 (39%), Positives = 115/197 (58%), Gaps = 14/197 (7%)
Query: 146 GFDLDMTYITENIIAMGFPAGDMSSGFFGYVEGFYRNHMEEVIKFFETYHKDKYKVYNLC 205
GFDLD+TY+T+++IAM FP SSG + +RN + EV +FF+T H DK+++YNLC
Sbjct: 7 GFDLDLTYVTDHVIAMSFP----SSG----RQSLFRNPIGEVSRFFKTKHPDKFRIYNLC 58
Query: 206 SERLYDASLFEGRCVASFPFDDHNCPPIQLITSFCHSAYSWLKEDIENVVVVHCKAGMAR 265
SER YD + F+ V DDHN P + + F A W+ D ++V+ +H K G R
Sbjct: 59 SERGYDETKFDNH-VYRVMIDDHNVPTLVDLLKFIDDAKVWMTSDPDHVIAIHSKGGKGR 117
Query: 266 TGLMISSLLLYLKFFPTAEESIDYYNQKRCVDGKGLVL-----PSQIRYVKYFERILTYF 320
TG ++SS LL F TA+E+++Y+ +R G V SQIRYV YFE+I +
Sbjct: 118 TGTLVSSWLLEDGKFDTAKEALEYFGSRRTDFEVGDVFQGVETASQIRYVGYFEKIKKNY 177
Query: 321 NGENQPGRRCMLRGFRL 337
G+ P ++ + G +
Sbjct: 178 GGQLPPMKKLKVTGVTI 194
>pdb|3N0A|A Chain A, Crystal Structure Of Auxilin (40-400)
Length = 361
Score = 88.6 bits (218), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 57/183 (31%), Positives = 91/183 (49%), Gaps = 15/183 (8%)
Query: 135 VSQNKRRYQDGGFDLDMTYITENIIAMGFPAGDMSSGFFGYVEGFYRNHMEEVIKFFETY 194
V Q+ Y G DLD TY+T II M FP + GF RN ++++ F ++
Sbjct: 10 VIQSVTSYTKG--DLDFTYVTSRIIVMSFPLDSVDIGF--------RNQVDDIRSFLDSR 59
Query: 195 HKDKYKVYNLCSERLYDASLFEGRCVASFPFDDHNCPPIQLITSFCHSAYSWLKEDIENV 254
H D Y VYNL S + Y + F R V+ + P + + + C + Y+WL ++ +NV
Sbjct: 60 HLDHYTVYNL-SPKSYRTAKFHSR-VSECSWPIRQAPSLHNLFAVCRNMYNWLLQNPKNV 117
Query: 255 VVVHCKAGMARTGLMISSLLLYLKFFPTAEESIDYYNQKRCVDGKGLVLPSQIRYVKYFE 314
VVHC G A + +++ ++ ++ + T ++ KR G GL PS RY+ Y
Sbjct: 118 CVVHCLDGRAASSILVGAMFIFCNLYSTPGPAVRLLYAKR--PGIGLS-PSHRRYLGYMC 174
Query: 315 RIL 317
+L
Sbjct: 175 DLL 177
>pdb|1R6H|A Chain A, Solution Structure Of Human Prl-3
Length = 172
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 58/118 (49%), Gaps = 13/118 (11%)
Query: 201 VYNLCSERLYDASLFE--GRCVASFPFDDHNCPPIQLITSFCHSAYSWLKEDIENVVVVH 258
V +C E YD + E G V +PFDD PP +++ + + E + V VH
Sbjct: 48 VVRVC-EVTYDKTPLEKDGITVVDWPFDDGAPPPGKVVEDWLSLVKAKFCEAPGSCVAVH 106
Query: 259 CKAGMARTGLMISSLLLY--LKFFPTAEESIDYYNQKRCVDGKGLVLPSQIRYVKYFE 314
C AG+ R ++++ L+ +K+ E++I + QKR +G + Q+ Y++ +
Sbjct: 107 CVAGLGRAPVLVALALIESGMKY----EDAIQFIRQKR----RGAINSKQLTYLEKYR 156
>pdb|3RZ2|A Chain A, Crystal Of Prl-1 Complexed With Peptide
pdb|3RZ2|B Chain B, Crystal Of Prl-1 Complexed With Peptide
Length = 189
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 62/141 (43%), Gaps = 13/141 (9%)
Query: 189 KFFETYHKDKYKVYNLCSERLYDASLFE--GRCVASFPFDDHNCPPIQLITSFCHSAYSW 246
KF E K E YD +L E G V +PFDD P Q++ +
Sbjct: 52 KFIEELKKYGVTTIVRVCEATYDTTLVEKEGIHVLDWPFDDGAPPSNQIVDDWLSLVKIK 111
Query: 247 LKEDIENVVVVHCKAGMARTGLMISSLLLY--LKFFPTAEESIDYYNQKRCVDGKGLVLP 304
+E+ + VHC AG+ R ++++ L+ +K+ E+++ + QKR +G
Sbjct: 112 FREEPGCCIAVHCVAGLGRAPVLVALALIEGGMKY----EDAVQFIRQKR----RGAFNS 163
Query: 305 SQIRYV-KYFERILTYFNGEN 324
Q+ Y+ KY ++ F N
Sbjct: 164 KQLLYLEKYRPKMRLRFKDSN 184
>pdb|1V3A|A Chain A, Structure Of Human Prl-3, The Phosphatase Associated With
Cancer Metastasis
Length = 173
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 64/137 (46%), Gaps = 14/137 (10%)
Query: 201 VYNLCSERLYDASLFE--GRCVASFPFDDHNCPPIQLITSFCHSAYSWLKEDIENVVVVH 258
V +C E YD + E G V +PFDD PP +++ + + E + V VH
Sbjct: 45 VVRVC-EVTYDKTPLEKDGITVVDWPFDDGAPPPGKVVEDWLSLVKAKFCEAPGSCVAVH 103
Query: 259 CKAGMARTGLMISSLLLY--LKFFPTAEESIDYYNQKRCVDGKGLVLPSQIRYV-KYFER 315
C AG+ R ++++ L+ +K+ E++I + QKR +G + Q+ Y+ KY +
Sbjct: 104 CVAGLGRAPVLVALALIESGMKY----EDAIQFIRQKR----RGAINSKQLTYLEKYRPK 155
Query: 316 ILTYFNGENQPGRRCML 332
F + RC +
Sbjct: 156 QRLRFKDPHTHKTRCCV 172
>pdb|1X24|A Chain A, Prl-1 (Ptp4a)
pdb|1X24|B Chain B, Prl-1 (Ptp4a)
Length = 180
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 50/110 (45%), Gaps = 8/110 (7%)
Query: 189 KFFETYHKDKYKVYNLCSERLYDASLFE--GRCVASFPFDDHNCPPIQLITSFCHSAYSW 246
KF E K E YD +L E G V +PFDD P Q++ +
Sbjct: 52 KFIEELKKYGVTTIVRVCEATYDTTLVEKEGIHVLDWPFDDGAPPSNQIVDDWLSLVKIK 111
Query: 247 LKEDIENVVVVHCKAGMARTGLMISSLLLY--LKFFPTAEESIDYYNQKR 294
+E+ + VHC AG+ R ++++ L+ +K+ E+++ + QKR
Sbjct: 112 FREEPGCCIAVHCVAGLGRAPVLVALALIEGGMKY----EDAVQFIRQKR 157
>pdb|1ZCK|A Chain A, Native Structure Prl-1 (Ptp4a1)
pdb|1ZCK|B Chain B, Native Structure Prl-1 (Ptp4a1)
pdb|1ZCK|C Chain C, Native Structure Prl-1 (Ptp4a1)
Length = 154
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 32/127 (25%), Positives = 56/127 (44%), Gaps = 8/127 (6%)
Query: 189 KFFETYHKDKYKVYNLCSERLYDASLFE--GRCVASFPFDDHNCPPIQLITSFCHSAYSW 246
KF E K E YD +L E G V +PFDD P Q++ +
Sbjct: 26 KFIEELKKYGVTTIVRVCEATYDTTLVEKEGIHVLDWPFDDGAPPSNQIVDDWLSLVKIK 85
Query: 247 LKEDIENVVVVHCKAGMARTGLMISSLLLYLKFFPTAEESIDYYNQKRCVDGKGLVLPSQ 306
+E+ + VHC AG+ R ++++ L ++ E+++ + QKR +G Q
Sbjct: 86 FREEPGCCIAVHCVAGLGRAPVLVA--LALIEGGXKYEDAVQFIRQKR----RGAFNSKQ 139
Query: 307 IRYVKYF 313
+ Y++ +
Sbjct: 140 LLYLEKY 146
>pdb|1RXD|A Chain A, Crystal Structure Of Human Protein Tyrosine Phosphatase
4a1
pdb|1RXD|B Chain B, Crystal Structure Of Human Protein Tyrosine Phosphatase
4a1
pdb|1RXD|C Chain C, Crystal Structure Of Human Protein Tyrosine Phosphatase
4a1
Length = 159
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 32/127 (25%), Positives = 56/127 (44%), Gaps = 8/127 (6%)
Query: 189 KFFETYHKDKYKVYNLCSERLYDASLFE--GRCVASFPFDDHNCPPIQLITSFCHSAYSW 246
KF E K E YD +L E G V +PFDD P Q++ +
Sbjct: 31 KFIEELKKYGVTTIVRVCEATYDTTLVEKEGIHVLDWPFDDGAPPSNQIVDDWLSLVKIK 90
Query: 247 LKEDIENVVVVHCKAGMARTGLMISSLLLYLKFFPTAEESIDYYNQKRCVDGKGLVLPSQ 306
+E+ + VHC AG+ R ++++ L ++ E+++ + QKR +G Q
Sbjct: 91 FREEPGCCIAVHCVAGLGRAPVLVA--LALIEGGXKYEDAVQFIRQKR----RGAFNSKQ 144
Query: 307 IRYVKYF 313
+ Y++ +
Sbjct: 145 LLYLEKY 151
>pdb|1XM2|A Chain A, Crystal Structure Of Human Prl-1
pdb|1XM2|B Chain B, Crystal Structure Of Human Prl-1
pdb|1XM2|C Chain C, Crystal Structure Of Human Prl-1
pdb|1XM2|D Chain D, Crystal Structure Of Human Prl-1
pdb|1XM2|E Chain E, Crystal Structure Of Human Prl-1
pdb|1XM2|F Chain F, Crystal Structure Of Human Prl-1
Length = 173
Score = 38.1 bits (87), Expect = 0.013, Method: Composition-based stats.
Identities = 36/148 (24%), Positives = 61/148 (41%), Gaps = 9/148 (6%)
Query: 189 KFFETYHKDKYKVYNLCSERLYDASLFE--GRCVASFPFDDHNCPPIQLITSFCHSAYSW 246
KF E K E YD +L E G V +PFDD P Q++ +
Sbjct: 32 KFIEELKKYGVTTIVRVCEATYDTTLVEKEGIHVLDWPFDDGAPPSNQIVDDWLSLVKIK 91
Query: 247 LKEDIENVVVVHCKAGMARTGLMISSLLLYLKFFPTAEESIDYYNQKRCVDGKGLVLPSQ 306
+E+ + VH AG+ R ++++ L ++ E+++ + QKR +G Q
Sbjct: 92 FREEPGCCIAVHSVAGLGRAPVLVA--LALIEGGXKYEDAVQFIRQKR----RGAFNSKQ 145
Query: 307 IRYV-KYFERILTYFNGENQPGRRCMLR 333
+ Y+ KY + F N C ++
Sbjct: 146 LLYLEKYRPKXRLRFKDSNGHRNNCCIQ 173
>pdb|1ZCL|A Chain A, Prl-1 C104s Mutant In Complex With Sulfate
pdb|1ZCL|B Chain B, Prl-1 C104s Mutant In Complex With Sulfate
Length = 180
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 49/110 (44%), Gaps = 8/110 (7%)
Query: 189 KFFETYHKDKYKVYNLCSERLYDASLFE--GRCVASFPFDDHNCPPIQLITSFCHSAYSW 246
KF E K E YD +L E G V +PFDD P Q++ +
Sbjct: 52 KFIEELKKYGVTTIVRVCEATYDTTLVEKEGIHVLDWPFDDGAPPSNQIVDDWLSLVKIK 111
Query: 247 LKEDIENVVVVHCKAGMARTGLMISSLLLY--LKFFPTAEESIDYYNQKR 294
+E+ + VH AG+ R ++++ L+ +K+ E+++ + QKR
Sbjct: 112 FREEPGCCIAVHSVAGLGRAPVLVALALIEGGMKY----EDAVQFIRQKR 157
>pdb|1OHC|A Chain A, Structure Of The Proline Directed Phosphatase Cdc14
pdb|1OHD|A Chain A, Structure Of Cdc14 In Complex With Tungstate
Length = 348
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 55/112 (49%), Gaps = 11/112 (9%)
Query: 178 GFYRNHMEEVIKFFETYHKDKYKVYNLCSERLYDASLFE--GRCVASFPFDDHNCPPIQL 235
G++++ E I++F+ ++ N +R+YDA F G F D + P +
Sbjct: 201 GYHQHSPETYIQYFKNHNVTTIIRLN---KRMYDAKRFTDAGFDHHDLFFADGSTPTDAI 257
Query: 236 ITSFCHSAYSWLKEDIENVVVVHCKAGMARTGLMISSLLLYLKFFPTAEESI 287
+ F + E+ E + VHCKAG+ RTG +I+ ++ + TA E+I
Sbjct: 258 VKEFLD-----ICENAEGAIAVHCKAGLGRTGTLIACYIM-KHYRMTAAETI 303
>pdb|3S4O|A Chain A, Protein Tyrosine Phosphatase (Putative) From Leishmania
Major
pdb|3S4O|B Chain B, Protein Tyrosine Phosphatase (Putative) From Leishmania
Major
Length = 167
Score = 35.4 bits (80), Expect = 0.086, Method: Composition-based stats.
Identities = 38/140 (27%), Positives = 64/140 (45%), Gaps = 30/140 (21%)
Query: 192 ETYHKDKYKVYNLCSERLYDASLFEGRC--VASFPFDDHNCPPIQLITSFCHSAYSWLK- 248
E H+ + +C YDA+L + R V S+PFDD PP + + SWLK
Sbjct: 42 ELQHRGVRHLVRVCGPT-YDATLVKSRGIDVHSWPFDD-GAPPTRAVLD------SWLKL 93
Query: 249 ---------EDIE---NVVVVHCKAGMARTGLMIS-SLLLYLKFFPTAEESIDYYNQKRC 295
ED + VHC AG+ R ++++ +L+ Y +A ++I +KR
Sbjct: 94 LDTELARQQEDPSVPPPTIGVHCVAGLGRAPILVALALVEYGNV--SALDAIALIREKR- 150
Query: 296 VDGKGLVLPSQIRYVKYFER 315
KG + +Q ++ ++R
Sbjct: 151 ---KGAINQTQXHWITKYKR 167
>pdb|3RGO|A Chain A, Crystal Structure Of Ptpmt1
Length = 157
Score = 34.3 bits (77), Expect = 0.22, Method: Composition-based stats.
Identities = 21/70 (30%), Positives = 39/70 (55%), Gaps = 4/70 (5%)
Query: 255 VVVHCKAGMARTGLMISSLLLYLKFFPTAEESIDYYNQKRCVDGKGLVLPSQIRYVKYFE 314
V VHCKAG +R+ M+++ L+ + + + EE+I+ + R + PSQ+ +K F
Sbjct: 92 VYVHCKAGRSRSATMVAAYLIQVHNW-SPEEAIEAIAKIR---SHISIRPSQLEVLKEFH 147
Query: 315 RILTYFNGEN 324
+ +T +N
Sbjct: 148 KEITARAAKN 157
>pdb|1YN9|A Chain A, Crystal Structure Of Baculovirus Rna 5'-Phosphatase
Complexed With Phosphate
pdb|1YN9|B Chain B, Crystal Structure Of Baculovirus Rna 5'-Phosphatase
Complexed With Phosphate
pdb|1YN9|C Chain C, Crystal Structure Of Baculovirus Rna 5'-Phosphatase
Complexed With Phosphate
Length = 169
Score = 33.5 bits (75), Expect = 0.35, Method: Composition-based stats.
Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
Query: 231 PPIQLITSFCHSAYSWLKEDIENVVVVHCKAGMARTGLMISSLLLY-LKFFPTAEESIDY 289
PP ++ F + + ++ +V VHC G+ RTG M+ L++ L P +E+ID
Sbjct: 92 PPESIVQEFIDTVKEFTEKCPGMLVGVHCTHGINRTGYMVCRYLMHTLGIAP--QEAIDR 149
Query: 290 YNQKR 294
+ + R
Sbjct: 150 FEKAR 154
>pdb|1OHE|A Chain A, Structure Of Cdc14b Phosphatase With A Peptide Ligand
Length = 348
Score = 33.5 bits (75), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 54/112 (48%), Gaps = 11/112 (9%)
Query: 178 GFYRNHMEEVIKFFETYHKDKYKVYNLCSERLYDASLFE--GRCVASFPFDDHNCPPIQL 235
G++++ E I++F+ ++ N +R+YDA F G F D + P +
Sbjct: 201 GYHQHSPETYIQYFKNHNVTTIIRLN---KRMYDAKRFTDAGFDHHDLFFADGSTPTDAI 257
Query: 236 ITSFCHSAYSWLKEDIENVVVVHCKAGMARTGLMISSLLLYLKFFPTAEESI 287
+ F + E+ E + VH KAG+ RTG +I+ ++ + TA E+I
Sbjct: 258 VKEFLD-----ICENAEGAIAVHSKAGLGRTGTLIACYIM-KHYRMTAAETI 303
>pdb|1LAR|A Chain A, Crystal Structure Of The Tandem Phosphatase Domains Of
Rptp Lar
pdb|1LAR|B Chain B, Crystal Structure Of The Tandem Phosphatase Domains Of
Rptp Lar
Length = 575
Score = 33.1 bits (74), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 38/66 (57%), Gaps = 7/66 (10%)
Query: 255 VVVHCKAGMARTG--LMISSLLLYLKFFPTAEESIDYYNQKRCVDG-KGLVLPSQIRYVK 311
+VVHC AG+ RTG ++I ++L +K E+++D Y C+ + ++ ++ +YV
Sbjct: 212 MVVHCSAGVGRTGCFIVIDAMLERMKH----EKTVDIYGHVTCMRSQRNYMVQTEDQYVF 267
Query: 312 YFERIL 317
E +L
Sbjct: 268 IHEALL 273
>pdb|2BZL|A Chain A, Crystal Structure Of The Human Protein Tyrosine
Phosphatase N14 At 1.65 A Resolution
Length = 325
Score = 32.7 bits (73), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
Query: 255 VVVHCKAGMARTGLMI-SSLLLYLKFFPTAEESIDYYNQKRCVDGKGLVLPSQIRYVKYF 313
+VVHC AG+ RTG++I S L++Y E ++ R + + + + I K+
Sbjct: 255 IVVHCSAGVGRTGVLILSELMIYCL---EHNEKVEVPMMLRLLREQRMFMIQTIAQYKFV 311
Query: 314 ERILTYF 320
++L F
Sbjct: 312 YQVLIQF 318
>pdb|2JJD|A Chain A, Protein Tyrosine Phosphatase, Receptor Type, E Isoform
pdb|2JJD|B Chain B, Protein Tyrosine Phosphatase, Receptor Type, E Isoform
pdb|2JJD|C Chain C, Protein Tyrosine Phosphatase, Receptor Type, E Isoform
pdb|2JJD|D Chain D, Protein Tyrosine Phosphatase, Receptor Type, E Isoform
pdb|2JJD|E Chain E, Protein Tyrosine Phosphatase, Receptor Type, E Isoform
pdb|2JJD|F Chain F, Protein Tyrosine Phosphatase, Receptor Type, E Isoform
Length = 599
Score = 32.0 bits (71), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 39/69 (56%), Gaps = 7/69 (10%)
Query: 255 VVVHCKAGMARTG--LMISSLLLYLKFFPTAEESIDYYN-QKRCVDGKGLVLPSQIRYVK 311
+VVHC AG+ RTG ++I +++ + AE+ +D + R + + ++ + ++Y
Sbjct: 226 IVVHCSAGVGRTGTFIVIDAMMAMMH----AEQKVDVFEFVSRIRNQRPQMVQTDMQYTF 281
Query: 312 YFERILTYF 320
++ +L Y+
Sbjct: 282 IYQALLEYY 290
>pdb|2I75|A Chain A, Crystal Structure Of Human Protein Tyrosine Phosphatase N4
(Ptpn4)
Length = 320
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/20 (60%), Positives = 16/20 (80%)
Query: 252 ENVVVVHCKAGMARTGLMIS 271
E VVVHC AG+ RTG++I+
Sbjct: 237 EEPVVVHCSAGIGRTGVLIT 256
>pdb|3SR9|A Chain A, Crystal Structure Of Mouse Ptpsigma
Length = 583
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 25/38 (65%), Gaps = 6/38 (15%)
Query: 255 VVVHCKAGMARTG--LMISSLLLYLKFFPTAEESIDYY 290
+VVHC AG+ RTG ++I ++L +K E+++D Y
Sbjct: 226 IVVHCSAGVGRTGCFIVIDAMLERIK----TEKTVDVY 259
>pdb|2CFV|A Chain A, Crystal Structure Of Human Protein Tyrosine Phosphatase
Receptor Type J
Length = 316
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Query: 227 DHNCP-PIQLITSFCHSAYSWLKEDI-ENVVVVHCKAGMARTGLMIS 271
DH P L+ +F + ++K+ E+ ++VHC AG+ RTG I+
Sbjct: 210 DHGVPDTTDLLINFRYLVRDYMKQSPPESPILVHCSAGVGRTGTFIA 256
>pdb|3I36|A Chain A, Crystal Structure Of Rat Protein Tyrosine Phosphatase Eta
Catalytic Domain
Length = 342
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 4/53 (7%)
Query: 221 ASFPFDDHNCP-PIQLITSFCHSAYSWLKE-DIENVVVVHCKAGMARTGLMIS 271
S+P DH P L+ +F + ++K+ E+ ++VHC AG+ RTG I+
Sbjct: 206 TSWP--DHGVPDTTDLLINFRYLVRDYMKQIPPESPILVHCSAGVGRTGTFIA 256
>pdb|2FH7|A Chain A, Crystal Structure Of The Phosphatase Domains Of Human Ptp
Sigma
Length = 595
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 25/38 (65%), Gaps = 6/38 (15%)
Query: 255 VVVHCKAGMARTG--LMISSLLLYLKFFPTAEESIDYY 290
+VVHC AG+ RTG ++I ++L +K E+++D Y
Sbjct: 224 IVVHCSAGVGRTGCFIVIDAMLERIK----PEKTVDVY 257
>pdb|1YFO|A Chain A, Receptor Protein Tyrosine Phosphatase Alpha, Domain 1 From
Mouse
pdb|1YFO|B Chain B, Receptor Protein Tyrosine Phosphatase Alpha, Domain 1 From
Mouse
Length = 302
Score = 29.3 bits (64), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 38/69 (55%), Gaps = 7/69 (10%)
Query: 255 VVVHCKAGMARTG--LMISSLLLYLKFFPTAEESIDYYN-QKRCVDGKGLVLPSQIRYVK 311
+VVHC AG+ RTG ++I ++L + +E +D Y R + ++ + ++YV
Sbjct: 228 IVVHCSAGVGRTGTFVVIDAMLDMMH----SERKVDVYGFVSRIRAQRCQMVQTDMQYVF 283
Query: 312 YFERILTYF 320
++ +L ++
Sbjct: 284 IYQALLEHY 292
>pdb|4ACQ|A Chain A, Alpha-2 Macroglobulin
pdb|4ACQ|B Chain B, Alpha-2 Macroglobulin
pdb|4ACQ|C Chain C, Alpha-2 Macroglobulin
pdb|4ACQ|D Chain D, Alpha-2 Macroglobulin
Length = 1451
Score = 29.3 bits (64), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 9/27 (33%), Positives = 20/27 (74%)
Query: 285 ESIDYYNQKRCVDGKGLVLPSQIRYVK 311
+ I ++ Q R VDGKG+ +P+++ +++
Sbjct: 338 QGIPFFGQVRLVDGKGVPIPNKVIFIR 364
>pdb|1SI8|A Chain A, Crystal Structure Of E. Faecalis Catalase
pdb|1SI8|B Chain B, Crystal Structure Of E. Faecalis Catalase
pdb|1SI8|C Chain C, Crystal Structure Of E. Faecalis Catalase
pdb|1SI8|D Chain D, Crystal Structure Of E. Faecalis Catalase
Length = 484
Score = 29.3 bits (64), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 10/79 (12%)
Query: 342 YWIRPHITVSDHNGVLFSSKKHPRTKDLSPE---DFWFSAPKKGVMVFALPGEPGLAELA 398
++IR I D + S K++PRT SPE DFW +P+ V L + G+
Sbjct: 132 FFIRDAIKFPD---FIHSQKRNPRTHLKSPEAVWDFWSHSPESLHQVTILMSDRGIPL-- 186
Query: 399 GDFKIHFHDRQGDFYCWLN 417
F+ H H + W+N
Sbjct: 187 -SFR-HMHGFGSHTFKWVN 203
>pdb|1USY|A Chain A, Atp Phosphoribosyl Transferase (Hisg:hisz) Complex From
Thermotoga Maritima
pdb|1USY|B Chain B, Atp Phosphoribosyl Transferase (Hisg:hisz) Complex From
Thermotoga Maritima
pdb|1USY|D Chain D, Atp Phosphoribosyl Transferase (Hisg:hisz) Complex From
Thermotoga Maritima
Length = 275
Score = 28.9 bits (63), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 36/81 (44%), Gaps = 14/81 (17%)
Query: 374 FWFSAPKKGVMVFALPGEPGLAELAGDFKIHFHDRQGDFYCWLNTTMMENRKVLNTGDLD 433
F+ A KKG F +P E AG+F F DR+G+ + + VLN
Sbjct: 12 FYSKATKKGFSPFFVPALEKAEEPAGNF---FLDRKGNLFSIREDF---TKTVLN----- 60
Query: 434 GFDKRKLPSPGFQVEVVLADY 454
RK SP Q++V AD+
Sbjct: 61 ---HRKRYSPDSQIKVWYADF 78
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.131 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,766,211
Number of Sequences: 62578
Number of extensions: 738955
Number of successful extensions: 1595
Number of sequences better than 100.0: 39
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 1538
Number of HSP's gapped (non-prelim): 50
length of query: 612
length of database: 14,973,337
effective HSP length: 105
effective length of query: 507
effective length of database: 8,402,647
effective search space: 4260142029
effective search space used: 4260142029
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)