Query 037030
Match_columns 612
No_of_seqs 314 out of 1670
Neff 5.5
Searched_HMMs 46136
Date Fri Mar 29 07:53:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037030.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037030hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2283 Clathrin coat dissocia 100.0 7.6E-59 1.6E-63 502.0 27.9 215 138-363 2-227 (434)
2 PTZ00242 protein tyrosine phos 99.9 3.2E-21 6.8E-26 185.8 17.2 148 148-318 8-159 (166)
3 KOG1720 Protein tyrosine phosp 99.9 7.2E-21 1.6E-25 186.5 14.5 183 106-316 21-207 (225)
4 PF10409 PTEN_C2: C2 domain of 99.8 5.5E-21 1.2E-25 176.7 10.0 117 325-453 1-134 (134)
5 PTZ00393 protein tyrosine phos 99.8 5.7E-19 1.2E-23 178.0 15.5 140 153-318 89-230 (241)
6 smart00195 DSPc Dual specifici 99.6 9E-14 2E-18 128.2 15.9 135 152-315 2-137 (138)
7 KOG2836 Protein tyrosine phosp 99.5 3.1E-13 6.7E-18 124.9 14.9 141 149-314 10-153 (173)
8 cd00127 DSPc Dual specificity 99.5 4.2E-13 9.2E-18 123.0 15.0 136 151-313 2-138 (139)
9 PF00782 DSPc: Dual specificit 99.5 3E-13 6.4E-18 123.7 12.2 119 188-315 11-132 (133)
10 COG2453 CDC14 Predicted protei 99.5 3.3E-13 7.2E-18 131.6 12.3 97 217-318 72-168 (180)
11 PF05706 CDKN3: Cyclin-depende 99.4 7.4E-13 1.6E-17 127.3 9.8 127 148-287 26-168 (168)
12 PRK12361 hypothetical protein; 99.4 3.9E-12 8.4E-17 143.4 16.9 140 150-315 94-235 (547)
13 smart00012 PTPc_DSPc Protein t 99.4 3.9E-12 8.4E-17 110.0 10.9 90 220-312 5-101 (105)
14 smart00404 PTPc_motif Protein 99.4 3.9E-12 8.4E-17 110.0 10.9 90 220-312 5-101 (105)
15 KOG1719 Dual specificity phosp 99.3 7.5E-12 1.6E-16 118.3 9.9 95 217-317 75-170 (183)
16 cd00047 PTPc Protein tyrosine 99.1 7.7E-10 1.7E-14 110.7 10.4 87 223-312 136-227 (231)
17 smart00194 PTPc Protein tyrosi 99.0 1E-09 2.2E-14 111.9 10.4 89 220-312 161-254 (258)
18 PRK15375 pathogenicity island 99.0 2.6E-09 5.6E-14 117.7 11.7 93 223-317 429-529 (535)
19 KOG0792 Protein tyrosine phosp 98.9 2.2E-09 4.8E-14 124.8 10.0 93 222-320 1033-1130(1144)
20 PHA02740 protein tyrosine phos 98.9 8E-09 1.7E-13 108.7 10.7 87 223-312 184-282 (298)
21 PHA02742 protein tyrosine phos 98.9 1.1E-08 2.4E-13 107.7 11.3 93 222-319 188-295 (303)
22 PF00102 Y_phosphatase: Protei 98.8 1.3E-08 2.8E-13 100.6 9.3 88 221-312 139-231 (235)
23 KOG0790 Protein tyrosine phosp 98.8 2.4E-09 5.3E-14 115.0 3.5 90 220-312 417-515 (600)
24 PHA02747 protein tyrosine phos 98.8 2.8E-08 6E-13 105.1 10.9 85 223-310 190-288 (312)
25 PHA02746 protein tyrosine phos 98.8 3.1E-08 6.6E-13 105.3 10.7 87 222-311 207-307 (323)
26 PHA02738 hypothetical protein; 98.7 4.9E-08 1.1E-12 103.7 10.5 92 223-319 185-293 (320)
27 PF03162 Y_phosphatase2: Tyros 98.6 2.7E-07 5.9E-12 89.3 10.6 138 149-317 5-150 (164)
28 KOG1716 Dual specificity phosp 98.6 1.1E-06 2.4E-11 91.9 14.9 143 149-318 73-217 (285)
29 KOG0791 Protein tyrosine phosp 98.6 1.9E-07 4.1E-12 99.2 9.0 101 219-322 254-356 (374)
30 KOG2386 mRNA capping enzyme, g 98.4 1.1E-06 2.5E-11 94.9 10.8 137 156-295 24-166 (393)
31 KOG1718 Dual specificity phosp 98.4 7.5E-06 1.6E-10 79.1 14.7 120 150-296 16-137 (198)
32 COG5599 PTP2 Protein tyrosine 98.4 6.3E-07 1.4E-11 91.8 6.6 85 222-312 190-288 (302)
33 TIGR01244 conserved hypothetic 98.3 1.6E-05 3.5E-10 74.3 13.3 114 151-294 2-125 (135)
34 KOG1717 Dual specificity phosp 98.2 6.6E-06 1.4E-10 84.4 9.9 113 197-318 197-313 (343)
35 KOG0793 Protein tyrosine phosp 98.2 2E-06 4.3E-11 96.9 6.7 87 220-311 895-988 (1004)
36 KOG0789 Protein tyrosine phosp 98.2 5.7E-06 1.2E-10 89.6 9.0 92 221-319 268-366 (415)
37 PLN02727 NAD kinase 97.9 4.8E-05 1E-09 89.4 9.9 89 184-279 271-368 (986)
38 KOG4228 Protein tyrosine phosp 97.9 6.7E-06 1.4E-10 97.3 2.6 94 222-318 700-795 (1087)
39 PF14566 PTPlike_phytase: Inos 97.8 3E-05 6.5E-10 73.8 5.9 57 217-276 92-148 (149)
40 KOG1572 Predicted protein tyro 97.5 0.00078 1.7E-08 68.6 10.8 98 188-290 78-184 (249)
41 PF13350 Y_phosphatase3: Tyros 97.5 0.00026 5.6E-09 67.9 7.1 96 188-288 35-158 (164)
42 KOG4228 Protein tyrosine phosp 97.2 0.00046 9.9E-09 82.3 6.1 94 222-319 986-1084(1087)
43 PF04273 DUF442: Putative phos 97.0 0.0084 1.8E-07 54.6 10.6 94 150-271 1-104 (110)
44 COG2365 Protein tyrosine/serin 96.8 0.0029 6.3E-08 65.3 7.1 42 252-294 136-177 (249)
45 PF14671 DSPn: Dual specificit 96.1 0.012 2.6E-07 56.0 6.3 68 225-293 38-110 (141)
46 COG5350 Predicted protein tyro 95.7 0.045 9.7E-07 52.7 7.9 79 229-318 73-153 (172)
47 cd01518 RHOD_YceA Member of th 93.4 0.41 8.9E-06 41.7 8.1 79 185-278 7-85 (101)
48 cd01448 TST_Repeat_1 Thiosulfa 89.2 2 4.3E-05 38.5 8.1 85 185-279 5-105 (122)
49 PRK01415 hypothetical protein; 87.2 4.6 9.9E-05 42.0 10.2 106 153-279 91-196 (247)
50 cd01533 4RHOD_Repeat_2 Member 83.4 6 0.00013 34.9 7.9 78 183-278 13-90 (109)
51 PF04179 Init_tRNA_PT: Initiat 83.2 5.3 0.00011 45.1 9.0 77 199-276 320-400 (451)
52 cd01523 RHOD_Lact_B Member of 82.5 5.1 0.00011 34.6 6.9 81 185-278 4-85 (100)
53 PRK00142 putative rhodanese-re 82.2 7.1 0.00015 41.9 9.3 108 152-279 89-196 (314)
54 cd01522 RHOD_1 Member of the R 80.4 8.6 0.00019 34.7 7.9 85 185-279 4-89 (117)
55 KOG4471 Phosphatidylinositol 3 79.0 5 0.00011 46.3 7.0 70 251-320 373-458 (717)
56 PLN02160 thiosulfate sulfurtra 79.0 4.8 0.0001 37.7 5.9 86 183-278 18-105 (136)
57 PF00581 Rhodanese: Rhodanese- 78.9 7.8 0.00017 33.3 6.9 79 185-271 3-85 (113)
58 PF06602 Myotub-related: Myotu 78.2 4.7 0.0001 43.9 6.4 22 251-272 230-251 (353)
59 cd01519 RHOD_HSP67B2 Member of 76.5 8.7 0.00019 33.3 6.5 84 185-278 4-90 (106)
60 PRK05320 rhodanese superfamily 75.9 14 0.00029 38.6 8.8 108 154-279 90-200 (257)
61 cd01529 4RHOD_Repeats Member o 72.6 8.7 0.00019 32.9 5.5 77 189-278 4-80 (96)
62 cd01443 Cdc25_Acr2p Cdc25 enzy 72.5 34 0.00075 30.3 9.5 75 184-269 6-83 (113)
63 smart00450 RHOD Rhodanese Homo 72.4 10 0.00022 31.5 5.7 76 197-278 3-80 (100)
64 cd01525 RHOD_Kc Member of the 70.7 10 0.00022 32.8 5.6 84 185-278 4-89 (105)
65 cd01528 RHOD_2 Member of the R 67.2 25 0.00054 30.4 7.2 78 185-278 5-82 (101)
66 cd01530 Cdc25 Cdc25 phosphatas 65.8 23 0.0005 32.3 7.0 82 185-276 7-91 (121)
67 cd01531 Acr2p Eukaryotic arsen 63.5 59 0.0013 28.7 9.1 73 184-268 6-78 (113)
68 cd01520 RHOD_YbbB Member of th 60.6 45 0.00098 30.4 8.0 37 185-227 4-40 (128)
69 TIGR03865 PQQ_CXXCW PQQ-depend 60.6 71 0.0015 30.8 9.7 28 250-278 114-141 (162)
70 cd01444 GlpE_ST GlpE sulfurtra 60.4 38 0.00083 28.5 7.0 74 185-278 5-80 (96)
71 PRK10287 thiosulfate:cyanide s 60.4 16 0.00034 32.8 4.8 67 195-278 18-84 (104)
72 KOG3824 Huntingtin interacting 59.1 37 0.0008 36.9 7.9 73 227-317 328-415 (472)
73 cd00158 RHOD Rhodanese Homolog 57.4 17 0.00037 29.7 4.2 67 196-278 8-74 (89)
74 cd01449 TST_Repeat_2 Thiosulfa 55.2 31 0.00068 30.4 5.8 27 250-278 76-102 (118)
75 cd01534 4RHOD_Repeat_3 Member 55.0 77 0.0017 27.0 8.1 76 185-277 4-79 (95)
76 PRK00162 glpE thiosulfate sulf 54.5 51 0.0011 28.8 7.0 74 184-278 9-82 (108)
77 cd01521 RHOD_PspE2 Member of t 50.4 52 0.0011 29.0 6.4 80 183-278 11-90 (110)
78 cd01526 RHOD_ThiF Member of th 47.8 1.1E+02 0.0023 27.6 8.2 82 183-279 11-97 (122)
79 COG1054 Predicted sulfurtransf 47.4 71 0.0015 34.4 7.7 106 154-279 92-197 (308)
80 PRK07411 hypothetical protein; 46.6 46 0.001 36.7 6.6 81 184-278 286-366 (390)
81 TIGR02981 phageshock_pspE phag 45.0 68 0.0015 28.5 6.3 63 200-278 20-82 (101)
82 cd01532 4RHOD_Repeat_1 Member 41.9 1E+02 0.0023 26.2 6.8 28 251-278 49-76 (92)
83 cd01524 RHOD_Pyr_redox Member 41.6 1.1E+02 0.0023 25.9 6.8 63 197-277 12-74 (90)
84 KOG1089 Myotubularin-related p 40.8 44 0.00095 38.8 5.3 21 252-272 344-364 (573)
85 cd01445 TST_Repeats Thiosulfat 37.4 2E+02 0.0044 26.8 8.5 25 250-274 93-118 (138)
86 PRK05600 thiamine biosynthesis 37.2 77 0.0017 34.8 6.4 84 181-278 272-356 (370)
87 COG3453 Uncharacterized protei 37.1 3.7E+02 0.0081 25.5 10.6 87 150-263 2-98 (130)
88 PLN02723 3-mercaptopyruvate su 36.2 1.3E+02 0.0028 32.2 7.9 86 184-278 194-293 (320)
89 PRK11493 sseA 3-mercaptopyruva 35.7 50 0.0011 34.4 4.6 28 250-278 85-112 (281)
90 KOG1096 Adenosine monophosphat 33.1 1.4E+02 0.003 35.6 7.7 72 225-316 553-633 (768)
91 cd01527 RHOD_YgaP Member of th 29.5 1.1E+02 0.0023 26.2 4.9 72 185-278 7-78 (99)
92 COG0607 PspE Rhodanese-related 29.4 1.6E+02 0.0035 25.1 6.1 67 198-279 20-86 (110)
93 PRK09629 bifunctional thiosulf 29.0 1.7E+02 0.0037 34.5 7.8 75 184-267 13-96 (610)
94 cd01535 4RHOD_Repeat_4 Member 28.8 1.7E+02 0.0037 27.6 6.5 63 198-278 11-73 (145)
95 PRK09629 bifunctional thiosulf 27.9 2.3E+02 0.005 33.4 8.6 75 184-268 151-238 (610)
96 PF08114 PMP1_2: ATPase proteo 26.6 20 0.00043 27.4 -0.2 28 250-279 6-33 (43)
97 PF09314 DUF1972: Domain of un 23.8 4.9E+02 0.011 26.0 8.9 66 179-247 18-83 (185)
98 TIGR03167 tRNA_sel_U_synt tRNA 21.5 1.7E+02 0.0036 31.6 5.5 35 243-278 64-99 (311)
99 PF03668 ATP_bind_2: P-loop AT 20.5 1.8E+02 0.0039 31.2 5.3 17 254-270 244-260 (284)
No 1
>KOG2283 consensus Clathrin coat dissociation kinase GAK/PTEN/Auxilin and related tyrosine phosphatases [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=7.6e-59 Score=501.96 Aligned_cols=215 Identities=53% Similarity=0.929 Sum_probs=198.7
Q ss_pred CceecccCCccCCeeeEecceeEeeCCCCCCCCCCCCcchhhhcCCHHHHHHHHHhhCCCeeEEEEccCCccCCcCcccC
Q 037030 138 NKRRYQDGGFDLDMTYITENIIAMGFPAGDMSSGFFGYVEGFYRNHMEEVIKFFETYHKDKYKVYNLCSERLYDASLFEG 217 (612)
Q Consensus 138 ~k~ry~~~g~dLDltyIT~RIIAm~~P~~~~ssg~~~~~E~~yRN~i~dV~~fLe~~h~~~y~V~NLcsEr~Yd~s~f~g 217 (612)
+++||+++|+||||+|||+|||||+||+++ ++..|||++++|+.||+++|++||+|||||+||.||...|++
T Consensus 2 ~k~r~~~~~~DLDltYIT~rIIamsfPa~~--------~es~yRN~l~dV~~fL~s~H~~~y~vyNL~~er~yd~~~f~g 73 (434)
T KOG2283|consen 2 KKRRYNEGGFDLDLTYITSRIIAMSFPAEG--------IESLYRNNLEDVVLFLDSKHKDHYKVYNLSSERLYDPSRFHG 73 (434)
T ss_pred ccchhhhccccccceeeeeeEEEEeCCCCc--------chhhhcCCHHHHHHHHhhccCCceEEEecCccccCCcccccc
Confidence 678999999999999999999999999986 578999999999999999999999999999999999999999
Q ss_pred ceEEEeccCCCCCCcHHHHHHHHHHHHHHHHhcCCCeEEEEcCCCCchhHHHHHHHHHHhcCCCCHHHHHHHHHHhcCCC
Q 037030 218 RCVASFPFDDHNCPPIQLITSFCHSAYSWLKEDIENVVVVHCKAGMARTGLMISSLLLYLKFFPTAEESIDYYNQKRCVD 297 (612)
Q Consensus 218 r~V~~~p~pD~~~P~L~~L~~fc~~I~~wL~~d~~nVVVVHCkaGkGRTGtviaayLi~~~~~~taeEALd~f~~kR~~~ 297 (612)
+ |..|+|+||++|+|++|..||+.|+.||+++++|||||||++|+||||+||||||+|++++.++++||++|.++|+..
T Consensus 74 ~-V~~~~~~Dh~~P~L~~l~~~c~~~~~WL~~d~~nVvvvHCk~Gkgrtg~~icA~L~~~~~~~ta~eald~~~~kR~~~ 152 (434)
T KOG2283|consen 74 R-VARFGFDDHNPPPLELLCPFCKSMDNWLSEDPKNVVVVHCKAGKGRTGVMICAYLIYSGISATAEEALDYFNEKRFDE 152 (434)
T ss_pred c-eeecCCCCCCCCcHHHHHHHHHCHHHHHhcCccceEEEEccCCCcceEEEEeHHHHhhhhcCCHHHHHHHHhhhhccc
Confidence 9 999999999999999999999999999999999999999999999999999999999999999999999999999655
Q ss_pred C--CCccChhHHHHHHHHHHHHhhhcCCCCCCc---ccceeeeeeecCCC------cccceEEEecCCceEEecCCC
Q 037030 298 G--KGLVLPSQIRYVKYFERILTYFNGENQPGR---RCMLRGFRLHRCPY------WIRPHITVSDHNGVLFSSKKH 363 (612)
Q Consensus 298 ~--~gv~~PSQ~RYL~Yf~~lL~~~~g~~pp~~---~l~L~~i~l~~~P~------~~rP~i~V~~~~~vlfst~~~ 363 (612)
+ .|+++|||+|||+||+.+| .++..++.. ++.|+.+.++.+|. .|+|++.|+.+.+.+++....
T Consensus 153 ~~~~~~~~PSq~RYv~Y~~~~l--~~~~~~~~~~~~~~f~~~~~~~~ip~~~~~~~~~~~~~~v~~~k~~~~~~~s~ 227 (434)
T KOG2283|consen 153 GKSKGVTIPSQRRYVGYFSRVL--LNGPLPPRSNSCPLFLHSFILISIPNFNSSRDGCRPAFPVYQGKKKVYSFSSD 227 (434)
T ss_pred cccCCccCchhhHHHHHHHHHh--hcCCcCcccccCceEeeeeeeeecCcccccCCCCCccceeeecceeeEEeccC
Confidence 5 5899999999999999973 356666654 67899999999996 399999999988888776543
No 2
>PTZ00242 protein tyrosine phosphatase; Provisional
Probab=99.87 E-value=3.2e-21 Score=185.85 Aligned_cols=148 Identities=23% Similarity=0.452 Sum_probs=122.1
Q ss_pred cCCeeeEecceeEeeCCCCCCCCCCCCcchhhhcCCHHHHHHHHHhhCCCeeEEEEccCCccCCcCccc--CceEEEecc
Q 037030 148 DLDMTYITENIIAMGFPAGDMSSGFFGYVEGFYRNHMEEVIKFFETYHKDKYKVYNLCSERLYDASLFE--GRCVASFPF 225 (612)
Q Consensus 148 dLDltyIT~RIIAm~~P~~~~ssg~~~~~E~~yRN~i~dV~~fLe~~h~~~y~V~NLcsEr~Yd~s~f~--gr~V~~~p~ 225 (612)
|-.++||+.|+|+|.-|... .+.+-+..|+.. +...|+|+| ++.|+...+. +..+.++||
T Consensus 8 ~~~~~~~~~r~~~~~~P~~~---------------~~~~~l~~L~~~--gI~~Iv~l~-~~~~~~~~~~~~gi~~~~~p~ 69 (166)
T PTZ00242 8 DRQIEYVLFKFLILDAPSPS---------------NLPLYIKELQRY--NVTHLVRVC-GPTYDAELLEKNGIEVHDWPF 69 (166)
T ss_pred CcceeeeceEEEEecCCCcc---------------cHHHHHHHHHhC--CCeEEEecC-CCCCCHHHHHHCCCEEEecCC
Confidence 34799999999999999753 122334556665 467999997 5677765553 556899999
Q ss_pred CCCCCCcHHHHHHHHHHHHHHHHh--cCCCeEEEEcCCCCchhHHHHHHHHHHhcCCCCHHHHHHHHHHhcCCCCCCccC
Q 037030 226 DDHNCPPIQLITSFCHSAYSWLKE--DIENVVVVHCKAGMARTGLMISSLLLYLKFFPTAEESIDYYNQKRCVDGKGLVL 303 (612)
Q Consensus 226 pD~~~P~L~~L~~fc~~I~~wL~~--d~~nVVVVHCkaGkGRTGtviaayLi~~~~~~taeEALd~f~~kR~~~~~gv~~ 303 (612)
+|+.+|+.+.+..|++.++.++.. ..+++|+|||.+|+||||++||||||..+.+ +++||+.+++++| ++...
T Consensus 70 ~D~~~P~~~~i~~~~~~i~~~~~~~~~~g~~V~VHC~aGigRSgt~~a~yL~~~~~~-s~~eAi~~vr~~R----~~~i~ 144 (166)
T PTZ00242 70 DDGAPPPKAVIDNWLRLLDQEFAKQSTPPETIAVHCVAGLGRAPILVALALVEYGGM-EPLDAVGFVREKR----KGAIN 144 (166)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHhhccCCCeEEEECCCCCCHHHHHHHHHHHHhCCC-CHHHHHHHHHHHC----CCCch
Confidence 999999999999999999888866 5679999999999999999999999998866 8999999999999 44456
Q ss_pred hhHHHHHHHHHHHHh
Q 037030 304 PSQIRYVKYFERILT 318 (612)
Q Consensus 304 PSQ~RYL~Yf~~lL~ 318 (612)
+.|++||..|.+.++
T Consensus 145 ~~Q~~~l~~~~~~~~ 159 (166)
T PTZ00242 145 QTQLQFLKKYKPRKK 159 (166)
T ss_pred HHHHHHHHHHHHHhc
Confidence 899999999988765
No 3
>KOG1720 consensus Protein tyrosine phosphatase CDC14 [Defense mechanisms]
Probab=99.85 E-value=7.2e-21 Score=186.54 Aligned_cols=183 Identities=26% Similarity=0.368 Sum_probs=143.3
Q ss_pred CccchhhccccccchhHHHHHHHHHHHhhhhcCceecccCCccCCeeeEec-ceeEeeCCCCCCCCCCCCcchhhhcC-C
Q 037030 106 PGFIGSITKGLVDSSKSAVKAVQVKARHVVSQNKRRYQDGGFDLDMTYITE-NIIAMGFPAGDMSSGFFGYVEGFYRN-H 183 (612)
Q Consensus 106 ~~~~~~~~k~l~Dts~~~~ksvq~~~R~~vS~~k~ry~~~g~dLDltyIT~-RIIAm~~P~~~~ssg~~~~~E~~yRN-~ 183 (612)
.++...+..++.|-+..++..+. .|+.- -.+|++||++ |+|++.-|... +-| ++..|.- -
T Consensus 21 ~~~~r~~~~g~l~~~~~~~~~ye------------~ye~v-e~gdfnwI~p~~~i~f~~p~~~-s~g----i~~~f~~~~ 82 (225)
T KOG1720|consen 21 YGVWKALQSGWLDFSSFNVDEYE------------HYEAV-ENGDFNWIIPDRFIAFAGPHLK-SRG----IESGFPLHL 82 (225)
T ss_pred HHHHHHHhccccchheecchhhe------------eeecc-CCCCcceeccchhhhhcCcccc-ccc----hhhcccccC
Confidence 55666777777777766665442 33311 2479999998 59999988754 333 4555654 4
Q ss_pred HHHHHHHHHhhCCCeeEEEEccCCccCCcCcccC--ceEEEeccCCCCCCcHHHHHHHHHHHHHHHHhcCCCeEEEEcCC
Q 037030 184 MEEVIKFFETYHKDKYKVYNLCSERLYDASLFEG--RCVASFPFDDHNCPPIQLITSFCHSAYSWLKEDIENVVVVHCKA 261 (612)
Q Consensus 184 i~dV~~fLe~~h~~~y~V~NLcsEr~Yd~s~f~g--r~V~~~p~pD~~~P~L~~L~~fc~~I~~wL~~d~~nVVVVHCka 261 (612)
...++.+|+.+ ..-.|+.| .++.||+..|.. ....+++++|..+|.+..+.+|++.++..++ .++|+|||++
T Consensus 83 ~~~~~~~~~~~--~v~s~vrl-n~~~yd~~~f~~~Gi~h~~l~f~Dg~tP~~~~v~~fv~i~e~~~~---~g~iaVHCka 156 (225)
T KOG1720|consen 83 PQPYIQYFKNN--NVTSIVRL-NKRLYDAKRFTDAGIDHHDLFFADGSTPTDAIVKEFVKIVENAEK---GGKIAVHCKA 156 (225)
T ss_pred ChhHHHHhhhc--ccceEEEc-CCCCCChHHhcccCceeeeeecCCCCCCCHHHHHHHHHHHHHHHh---cCeEEEEecc
Confidence 55677888833 45588888 589999999863 4567899999999999999999999998876 4899999999
Q ss_pred CCchhHHHHHHHHHHhcCCCCHHHHHHHHHHhcCCCCCCccChhHHHHHHHHHHH
Q 037030 262 GMARTGLMISSLLLYLKFFPTAEESIDYYNQKRCVDGKGLVLPSQIRYVKYFERI 316 (612)
Q Consensus 262 GkGRTGtviaayLi~~~~~~taeEALd~f~~kR~~~~~gv~~PSQ~RYL~Yf~~l 316 (612)
|.||||+||||||||...+ ++.|||+.+|..|. ..|..|-|..++..|..+
T Consensus 157 GlGRTG~liAc~lmy~~g~-ta~eaI~~lR~~Rp---G~V~gpqQ~~l~~~q~~~ 207 (225)
T KOG1720|consen 157 GLGRTGTLIACYLMYEYGM-TAGEAIAWLRICRP---GAVIGPQQHKLLHKQRDL 207 (225)
T ss_pred CCCchhHHHHHHHHHHhCC-CHHHHHHHHHhcCC---ccccCHHHHHHHHHHHHH
Confidence 9999999999999998665 99999999999992 357779999888887775
No 4
>PF10409 PTEN_C2: C2 domain of PTEN tumour-suppressor protein; InterPro: IPR014020 Tensins constitute an eukaryotic family of lipid phosphatases that are defined by the presence of two adjacent domains: a lipid phosphatase domain and a C2-like domain. The tensin-type C2 domain has a structure similar to the classical C2 domain (see IPR000008 from INTERPRO) that mediates the Ca2+-dependent membrane recruitment of several signalling proteins. However the tensin-type C2 domain lacks two of the three conserved loops that bind Ca2+, and in this respect it is similar to the C2 domains of PKC-type [, ]. The tensin-type C2 domain can bind phopholipid membranes in a Ca2+ independent manner []. In the tumour suppressor protein PTEN, the best characterised member of the family, the lipid phosphatase domain was shown to specifically dephosphorylate the D3 position of the inositol ring of the lipid second messenger, phosphatydilinositol-3-4-5-triphosphate (PIP3). The lipid phosphatase domain contains the signature motif HCXXGXXR present in the active sites of protein tyrosine phosphatases (PTPs) and dual specificity phosphatases (DSPs). Furthermore, two invariant lysines are found only in the tensin-type phosphatase motif (HCKXGKXR) and are suspected to interact with the phosphate group at position D1 and D5 of the inositol ring [, ]. The C2 domain is found at the C terminus of the tumour suppressor protein PTEN (phosphatidyl-inositol triphosphate phosphatase). This domain may include a CBR3 loop, indicating a central role in membrane binding. This domain associates across an extensive interface with the N-terminal phosphatase domain DSPc suggesting that the C2 domain productively positions the catalytic part of the protein on the membrane. The crystal structure of the PTEN tumour suppressor has been solved []. The lipid phosphatase domain has a structure similar to the dual specificity phosphatase (see IPR000387 from INTERPRO). However, PTEN has a larger active site pocket that could be important to accommodate PI(3,4,5)P3. Proteins known to contain a phosphatase and a C2 tensin-type domain are listed below: Tensin, a focal-adhesion molecule that binds to actin filaments. It may be involved in cell migration, cartilage development and in linking signal transduction pathways to the cytoskeleton. Phosphatase and tensin homologue deleted on chromosome 10 protein (PTEN). It antagonizes PI 3-kinase signalling by dephosphorylating the 3-position of the inositol ring of PI(3,4,5)P3 and thus inactivates downstream signalling. It plays major roles both during development and in the adult to control cell size, growth, and survival. Auxilin. It binds clathrin heavy chain and promotes its assembly into regular cages. Cyclin G-associated kinase or auxilin-2. It is a potential regulator of clathrin-mediated membrane trafficking. ; GO: 0005515 protein binding; PDB: 3N0A_A 1D5R_A 3V0D_B 3V0H_B 3V0G_A 3V0F_B 3V0J_A 3V0I_A 3AWE_B 3AWG_C ....
Probab=99.84 E-value=5.5e-21 Score=176.75 Aligned_cols=117 Identities=29% Similarity=0.479 Sum_probs=88.4
Q ss_pred CCCcccceeeeeeecCCCc-----ccceEEEecCCceEEecCCCCccccCCCCcceeecCCCCeEEEecCCCCCCceeec
Q 037030 325 QPGRRCMLRGFRLHRCPYW-----IRPHITVSDHNGVLFSSKKHPRTKDLSPEDFWFSAPKKGVMVFALPGEPGLAELAG 399 (612)
Q Consensus 325 pp~~~l~L~~i~l~~~P~~-----~rP~i~V~~~~~vlfst~~~~~~k~l~p~~~~~~~~~~g~~vf~l~~~~g~~~V~G 399 (612)
|+++++.|++|+|+++|.+ |||+++||++...++.+....... . .. ....+.+.++. .++|+|
T Consensus 1 ~~~~~l~L~~I~l~~iP~f~~~~gc~p~i~I~~~~~~v~~~~~~~~~~----~---~~--~~~~~~~~~~~---~~~l~G 68 (134)
T PF10409_consen 1 PPPRPLFLKSIILHGIPNFNSGGGCRPYIEIYNGGKKVFSTSKSYEDP----K---SY--EQDSVIIELPK---NLPLRG 68 (134)
T ss_dssp -S--EEEEEEEEEES-TTSTTSSCCTEEEEEEETTEEEEETCCTCCCC----C---EE--ETTCEEEEEEE---EEEEES
T ss_pred CCCeeEEEEEEEEECCCccCCCCCEEEEEEEECCCccEEEeccceecc----c---cc--cceeEEEEeCC---CCeEeC
Confidence 3567899999999999976 999999999999998554332210 0 00 12334555543 478999
Q ss_pred cEEEEEEec-------CccEEEEecccccc---CcccccCCCCCCCCCC--CCCCCCeEEEEEEec
Q 037030 400 DFKIHFHDR-------QGDFYCWLNTTMME---NRKVLNTGDLDGFDKR--KLPSPGFQVEVVLAD 453 (612)
Q Consensus 400 DV~I~f~~~-------~~~F~~wFNT~Fie---n~l~L~k~eLD~~~k~--k~f~~dF~VeL~F~d 453 (612)
||+|+|+|+ +.||||||||+|++ +.|.|+|.|||+++++ ++|+++|+|||+|++
T Consensus 69 DV~i~~~~~~~~~~~~~~~f~~~FnT~Fi~~~~~~l~~~k~eLD~~~kdk~k~f~~~f~Vel~f~e 134 (134)
T PF10409_consen 69 DVLIKFYHKRSSSMSKEKMFRFWFNTGFIEPNNNVLRFTKSELDKAHKDKHKRFPPDFKVELVFSE 134 (134)
T ss_dssp EEEEEEEECETTECCCEEEEEEEEEGGGSBTTTCEEEEEGGGSBTCCCGCTCCS-TT-EEEEEEEE
T ss_pred CEEEEEEeCCCcccccCeEEEEEEeeeeeeccccEEEcCHHHCCCcccCcccccCCCeEEEEEEeC
Confidence 999999885 35999999999998 6889999999999998 999999999999975
No 5
>PTZ00393 protein tyrosine phosphatase; Provisional
Probab=99.80 E-value=5.7e-19 Score=177.99 Aligned_cols=140 Identities=22% Similarity=0.431 Sum_probs=113.4
Q ss_pred eEecceeEeeCCCCCCCCCCCCcchhhhcCCHHHHHHHHHhhCCCeeEEEEccCCccCCcCccc--CceEEEeccCCCCC
Q 037030 153 YITENIIAMGFPAGDMSSGFFGYVEGFYRNHMEEVIKFFETYHKDKYKVYNLCSERLYDASLFE--GRCVASFPFDDHNC 230 (612)
Q Consensus 153 yIT~RIIAm~~P~~~~ssg~~~~~E~~yRN~i~dV~~fLe~~h~~~y~V~NLcsEr~Yd~s~f~--gr~V~~~p~pD~~~ 230 (612)
|-.-|||+|.-|... .+..-+..|+.. +...|++|| |+.|+...|. |..+.++||+|+.+
T Consensus 89 ~~~~rfLi~~~P~~~---------------~~~~yl~eLk~~--gV~~lVrlc-E~~Yd~~~~~~~GI~~~~lpipDg~a 150 (241)
T PTZ00393 89 HGKIKILILDAPTND---------------LLPLYIKEMKNY--NVTDLVRTC-ERTYNDGEITSAGINVHELIFPDGDA 150 (241)
T ss_pred cCceeEEEeCCCCHH---------------HHHHHHHHHHHc--CCCEEEECC-CCCCCHHHHHHcCCeEEEeecCCCCC
Confidence 333499999999642 122233455555 356899997 7789877764 56789999999999
Q ss_pred CcHHHHHHHHHHHHHHHHhcCCCeEEEEcCCCCchhHHHHHHHHHHhcCCCCHHHHHHHHHHhcCCCCCCccChhHHHHH
Q 037030 231 PPIQLITSFCHSAYSWLKEDIENVVVVHCKAGMARTGLMISSLLLYLKFFPTAEESIDYYNQKRCVDGKGLVLPSQIRYV 310 (612)
Q Consensus 231 P~L~~L~~fc~~I~~wL~~d~~nVVVVHCkaGkGRTGtviaayLi~~~~~~taeEALd~f~~kR~~~~~gv~~PSQ~RYL 310 (612)
|+.+.+..|+..++..+. .+..|+|||++|+||||+|+|||||..++ +++|||++++.+| +|...+.|++||
T Consensus 151 Ps~~~i~~~l~~i~~~l~--~g~~VaVHC~AGlGRTGtl~AayLI~~Gm--speeAI~~VR~~R----PgAIn~~Q~~fL 222 (241)
T PTZ00393 151 PTVDIVSNWLTIVNNVIK--NNRAVAVHCVAGLGRAPVLASIVLIEFGM--DPIDAIVFIRDRR----KGAINKRQLQFL 222 (241)
T ss_pred CCHHHHHHHHHHHHHHHh--cCCeEEEECCCCCCHHHHHHHHHHHHcCC--CHHHHHHHHHHHC----CCCCCHHHHHHH
Confidence 999999999999988774 45799999999999999999999999665 9999999999999 565678999999
Q ss_pred HHHHHHHh
Q 037030 311 KYFERILT 318 (612)
Q Consensus 311 ~Yf~~lL~ 318 (612)
..|...+.
T Consensus 223 ~~y~~~~~ 230 (241)
T PTZ00393 223 KAYKKKKK 230 (241)
T ss_pred HHHHHhcc
Confidence 99988654
No 6
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=99.56 E-value=9e-14 Score=128.22 Aligned_cols=135 Identities=16% Similarity=0.190 Sum_probs=98.2
Q ss_pred eeEecceeEeeCCCCCCCCCCCCcchhhhcCCHHHHHHHHHhhCCCeeEEEEccCCccCCcCcccCceEEEeccCCCCCC
Q 037030 152 TYITENIIAMGFPAGDMSSGFFGYVEGFYRNHMEEVIKFFETYHKDKYKVYNLCSERLYDASLFEGRCVASFPFDDHNCP 231 (612)
Q Consensus 152 tyIT~RIIAm~~P~~~~ssg~~~~~E~~yRN~i~dV~~fLe~~h~~~y~V~NLcsEr~Yd~s~f~gr~V~~~p~pD~~~P 231 (612)
+-|+++|+..++|... + ..+|... +...|+||+.+.. .. ...+..+.++|+.|...+
T Consensus 2 ~~I~~~l~~G~~~~~~---------------~----~~~l~~~--gi~~Vi~l~~~~~-~~-~~~~~~~~~ipi~D~~~~ 58 (138)
T smart00195 2 SEILPHLYLGSYSSAL---------------N----LALLKKL--GITHVINVTNEVP-NL-NKKGFTYLGVPILDNTET 58 (138)
T ss_pred cEEeCCeEECChhHcC---------------C----HHHHHHc--CCCEEEEccCCCC-CC-CCCCCEEEEEECCCCCCC
Confidence 4689999999998531 1 2455554 4569999975532 21 123445899999996544
Q ss_pred -cHHHHHHHHHHHHHHHHhcCCCeEEEEcCCCCchhHHHHHHHHHHhcCCCCHHHHHHHHHHhcCCCCCCccChhHHHHH
Q 037030 232 -PIQLITSFCHSAYSWLKEDIENVVVVHCKAGMARTGLMISSLLLYLKFFPTAEESIDYYNQKRCVDGKGLVLPSQIRYV 310 (612)
Q Consensus 232 -~L~~L~~fc~~I~~wL~~d~~nVVVVHCkaGkGRTGtviaayLi~~~~~~taeEALd~f~~kR~~~~~gv~~PSQ~RYL 310 (612)
....+..+++.++..+. .+++|+|||.+|+||||++++||||+...+ ++++|+++++.+|. .....+.|++.|
T Consensus 59 ~~~~~~~~~~~~i~~~~~--~~~~VlVHC~~G~~RS~~v~~~yl~~~~~~-~~~~A~~~v~~~R~---~~~p~~~~~~qL 132 (138)
T smart00195 59 KISPYFPEAVEFIEDAEK--KGGKVLVHCQAGVSRSATLIIAYLMKYRNL-SLNDAYDFVKDRRP---IISPNFGFLRQL 132 (138)
T ss_pred ChHHHHHHHHHHHHHHhc--CCCeEEEECCCCCchHHHHHHHHHHHHhCC-CHHHHHHHHHHHCC---ccCCCHhHHHHH
Confidence 44556666666665543 357999999999999999999999997766 89999999999993 122457888888
Q ss_pred HHHHH
Q 037030 311 KYFER 315 (612)
Q Consensus 311 ~Yf~~ 315 (612)
..|++
T Consensus 133 ~~~e~ 137 (138)
T smart00195 133 IEYER 137 (138)
T ss_pred HHHhh
Confidence 87764
No 7
>KOG2836 consensus Protein tyrosine phosphatase IVA1 [Signal transduction mechanisms]
Probab=99.52 E-value=3.1e-13 Score=124.86 Aligned_cols=141 Identities=26% Similarity=0.496 Sum_probs=115.5
Q ss_pred CCeeeEecceeEeeCCCCCCCCCCCCcchhhhcCCHHHHHHHHHhhC-CCeeEEEEccCCccCCcCcc--cCceEEEecc
Q 037030 149 LDMTYITENIIAMGFPAGDMSSGFFGYVEGFYRNHMEEVIKFFETYH-KDKYKVYNLCSERLYDASLF--EGRCVASFPF 225 (612)
Q Consensus 149 LDltyIT~RIIAm~~P~~~~ssg~~~~~E~~yRN~i~dV~~fLe~~h-~~~y~V~NLcsEr~Yd~s~f--~gr~V~~~p~ 225 (612)
..++|=.-|+++..-|... .+-.|+++-. -+...|+.+| |..||...+ .|+.|.++||
T Consensus 10 veIsy~~MrFLIThnPtna------------------Tln~fieELkKygvttvVRVC-e~TYdt~~lek~GI~Vldw~f 70 (173)
T KOG2836|consen 10 VEISYKNMRFLITHNPTNA------------------TLNKFIEELKKYGVTTVVRVC-EPTYDTTPLEKEGITVLDWPF 70 (173)
T ss_pred eeeeccceEEEEecCCCch------------------hHHHHHHHHHhcCCeEEEEec-ccccCCchhhhcCceEeeccc
Confidence 4566666778877777532 1223333211 2467899998 889997655 4778999999
Q ss_pred CCCCCCcHHHHHHHHHHHHHHHHhcCCCeEEEEcCCCCchhHHHHHHHHHHhcCCCCHHHHHHHHHHhcCCCCCCccChh
Q 037030 226 DDHNCPPIQLITSFCHSAYSWLKEDIENVVVVHCKAGMARTGLMISSLLLYLKFFPTAEESIDYYNQKRCVDGKGLVLPS 305 (612)
Q Consensus 226 pD~~~P~L~~L~~fc~~I~~wL~~d~~nVVVVHCkaGkGRTGtviaayLi~~~~~~taeEALd~f~~kR~~~~~gv~~PS 305 (612)
.|..+|+-+.+..+...+..-..+.|+..|+|||-+|.||..+++|.-||..++ ..++|+++++++| +|.....
T Consensus 71 ~dg~ppp~qvv~~w~~l~~~~f~e~p~~cvavhcvaglgrapvlvalalie~gm--kyedave~ir~kr----rga~n~k 144 (173)
T KOG2836|consen 71 DDGAPPPNQVVDDWLSLVKTKFREEPGCCVAVHCVAGLGRAPVLVALALIEAGM--KYEDAVEMIRQKR----RGAINSK 144 (173)
T ss_pred ccCCCCchHHHHHHHHHHHHHHhhCCCCeEEEEeecccCcchHHHHHHHHHccc--cHHHHHHHHHHHh----hccccHH
Confidence 999999999999999888887888999999999999999999999999999998 8999999999999 8889999
Q ss_pred HHHHHHHHH
Q 037030 306 QIRYVKYFE 314 (612)
Q Consensus 306 Q~RYL~Yf~ 314 (612)
|+.||..|.
T Consensus 145 ql~~lekyr 153 (173)
T KOG2836|consen 145 QLLYLEKYR 153 (173)
T ss_pred HHHHHHHhC
Confidence 999997764
No 8
>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases. Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.
Probab=99.50 E-value=4.2e-13 Score=123.00 Aligned_cols=136 Identities=16% Similarity=0.221 Sum_probs=97.2
Q ss_pred eeeEecceeEeeCCCCCCCCCCCCcchhhhcCCHHHHHHHHHhhCCCeeEEEEccCCccCCcCcccCceEEEeccCCCCC
Q 037030 151 MTYITENIIAMGFPAGDMSSGFFGYVEGFYRNHMEEVIKFFETYHKDKYKVYNLCSERLYDASLFEGRCVASFPFDDHNC 230 (612)
Q Consensus 151 ltyIT~RIIAm~~P~~~~ssg~~~~~E~~yRN~i~dV~~fLe~~h~~~y~V~NLcsEr~Yd~s~f~gr~V~~~p~pD~~~ 230 (612)
++.|+++|++.++|... . ..+|... +.-.|+||+.+..+......+..+.++|+.|...
T Consensus 2 ~~~i~~~l~~g~~~~~~---------------d----~~~L~~~--gi~~VI~l~~~~~~~~~~~~~~~~~~~~~~D~~~ 60 (139)
T cd00127 2 LSEITPGLYLGSYPAAS---------------D----KELLKKL--GITHVLNVAKEVPNENLFLSDFNYLYVPILDLPS 60 (139)
T ss_pred cCEEcCCeEECChhHhc---------------C----HHHHHHc--CCCEEEEcccCCCCcccCCCCceEEEEEceeCCC
Confidence 57899999999998632 1 2345544 4558999986544322223444589999999886
Q ss_pred CcH-HHHHHHHHHHHHHHHhcCCCeEEEEcCCCCchhHHHHHHHHHHhcCCCCHHHHHHHHHHhcCCCCCCccChhHHHH
Q 037030 231 PPI-QLITSFCHSAYSWLKEDIENVVVVHCKAGMARTGLMISSLLLYLKFFPTAEESIDYYNQKRCVDGKGLVLPSQIRY 309 (612)
Q Consensus 231 P~L-~~L~~fc~~I~~wL~~d~~nVVVVHCkaGkGRTGtviaayLi~~~~~~taeEALd~f~~kR~~~~~gv~~PSQ~RY 309 (612)
+.+ ..+..+++.+...+.. +++|+|||.+|.||||+|+++||+..+.+ ++++|+++++.+|.. ....+.+++.
T Consensus 61 ~~~~~~~~~~~~~i~~~~~~--~~~vlVHC~~G~~Rs~~~~~~~l~~~~~~-~~~~a~~~vr~~r~~---~~~~~~~~~~ 134 (139)
T cd00127 61 QDISKYFDEAVDFIDDAREK--GGKVLVHCLAGVSRSATLVIAYLMKTLGL-SLREAYEFVKSRRPI---ISPNAGFMRQ 134 (139)
T ss_pred CChHHHHHHHHHHHHHHHhc--CCcEEEECCCCCchhHHHHHHHHHHHcCC-CHHHHHHHHHHHCCc---cCCCHHHHHH
Confidence 654 4556666767655543 47999999999999999999999987765 999999999999942 2234566655
Q ss_pred HHHH
Q 037030 310 VKYF 313 (612)
Q Consensus 310 L~Yf 313 (612)
|.-|
T Consensus 135 l~~~ 138 (139)
T cd00127 135 LKEY 138 (139)
T ss_pred HHHh
Confidence 5444
No 9
>PF00782 DSPc: Dual specificity phosphatase, catalytic domain; InterPro: IPR000340 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents dual specificity protein-tyrosine phosphatases. Ser/Thr and Tyr dual specificity phosphatases are a group of enzymes with both Ser/Thr (3.1.3.16 from EC) and tyrosine specific protein phosphatase (3.1.3.48 from EC) activity able to remove both the serine/threonine or tyrosine-bound phosphate group from a wide range of phosphoproteins, including a number of enzymes which have been phosphorylated under the action of a kinase. Dual specificity protein phosphatases (DSPs) regulate mitogenic signal transduction and control the cell cycle. The crystal structure of a human DSP, vaccinia H1-related phosphatase (or VHR), has been determined at 2.1 angstrom resolution []. A shallow active site pocket in VHR allows for the hydrolysis of phosphorylated serine, threonine, or tyrosine protein residues, whereas the deeper active site of protein tyrosine phosphatases (PTPs) restricts substrate specificity to only phosphotyrosine. Positively charged crevices near the active site may explain the enzyme's preference for substrates with two phosphorylated residues. The VHR structure defines a conserved structural scaffold for both DSPs and PTPs. A "recognition region" connecting helix alpha1 to strand beta1, may determine differences in substrate specificity between VHR, the PTPs, and other DSPs. These proteins may also have inactive phosphatase domains, and dependent on the domain composition this loss of catalytic activity has different effects on protein function. Inactive single domain phosphatases can still specifically bind substrates, and protect again dephosphorylation, while the inactive domains of tandem phosphatases can be further subdivided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre [].; GO: 0008138 protein tyrosine/serine/threonine phosphatase activity, 0006470 protein dephosphorylation; PDB: 2G6Z_A 1MKP_A 1YZ4_A 2P4D_A 1M3G_A 1ZZW_A 2OUD_A 2HXP_A 3LJ8_A 1OHD_A ....
Probab=99.48 E-value=3e-13 Score=123.67 Aligned_cols=119 Identities=28% Similarity=0.370 Sum_probs=89.7
Q ss_pred HHHHHhhCCCeeEEEEccCCccC-CcCcccCceEEEeccCC-CCCCcHHHHHHHHHHHHHHHHhcCCCeEEEEcCCCCch
Q 037030 188 IKFFETYHKDKYKVYNLCSERLY-DASLFEGRCVASFPFDD-HNCPPIQLITSFCHSAYSWLKEDIENVVVVHCKAGMAR 265 (612)
Q Consensus 188 ~~fLe~~h~~~y~V~NLcsEr~Y-d~s~f~gr~V~~~p~pD-~~~P~L~~L~~fc~~I~~wL~~d~~nVVVVHCkaGkGR 265 (612)
..+|... +.-.|+|++.+... ......+..++++|+.| ...|....+..+++.|+.+... ++.|+|||.+|.+|
T Consensus 11 ~~~l~~~--~I~~Vin~~~~~~~~~~~~~~~~~~~~i~~~D~~~~~~~~~~~~~~~~i~~~~~~--~~~VlVHC~~G~~R 86 (133)
T PF00782_consen 11 IAFLKNL--GITHVINLQEECPNPYFYKPEGIEYLRIPIDDDPEEPILEHLDQAVEFIENAISE--GGKVLVHCKAGLSR 86 (133)
T ss_dssp HHHHHHT--TEEEEEECSSSSSTSHHHTTTTSEEEEEEEESSTTSHGGGGHHHHHHHHHHHHHT--TSEEEEEESSSSSH
T ss_pred HHHHHHC--CCCEEEEccCCCcCchhcccCCCEEEEEEecCCCCcchHHHHHHHHHhhhhhhcc--cceeEEEeCCCccc
Confidence 4566665 46689999754322 11122344589999999 4555667788888888877544 48999999999999
Q ss_pred hHHHHHHHHHHhcCCCCHHHHHHHHHHhcCCCCCCc-cChhHHHHHHHHHH
Q 037030 266 TGLMISSLLLYLKFFPTAEESIDYYNQKRCVDGKGL-VLPSQIRYVKYFER 315 (612)
Q Consensus 266 TGtviaayLi~~~~~~taeEALd~f~~kR~~~~~gv-~~PSQ~RYL~Yf~~ 315 (612)
||+++|||||+.+.+ +.++|+.+++.+| +.+ ..+.|+++|.-|++
T Consensus 87 S~~v~~ayLm~~~~~-~~~~A~~~v~~~r----p~~~~~~~~~~~L~~~e~ 132 (133)
T PF00782_consen 87 SGAVAAAYLMKKNGM-SLEEAIEYVRSRR----PQINPNPSFIRQLYEYEK 132 (133)
T ss_dssp HHHHHHHHHHHHHTS-SHHHHHHHHHHHS----TTSTHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHcCC-CHHHHHHHHHHHC----CCCCCCHHHHHHHHHhhc
Confidence 999999999997776 9999999999999 333 34678999987764
No 10
>COG2453 CDC14 Predicted protein-tyrosine phosphatase [Signal transduction mechanisms]
Probab=99.47 E-value=3.3e-13 Score=131.59 Aligned_cols=97 Identities=24% Similarity=0.312 Sum_probs=82.7
Q ss_pred CceEEEeccCCCCCCcHHHHHHHHHHHHHHHHhcCCCeEEEEcCCCCchhHHHHHHHHHHhcCCCCHHHHHHHHHHhcCC
Q 037030 217 GRCVASFPFDDHNCPPIQLITSFCHSAYSWLKEDIENVVVVHCKAGMARTGLMISSLLLYLKFFPTAEESIDYYNQKRCV 296 (612)
Q Consensus 217 gr~V~~~p~pD~~~P~L~~L~~fc~~I~~wL~~d~~nVVVVHCkaGkGRTGtviaayLi~~~~~~taeEALd~f~~kR~~ 296 (612)
+..+.++|++|+.+|++..+.+++..|+..+++. +.|+|||.+|+|||||++|||||+.+.+..+++++.+.+.+|..
T Consensus 72 ~~~~~~~~~~D~~~p~~~~l~~~v~~i~~~~~~g--~kVvVHC~~GigRSgtviaA~lm~~~~~~~~~~~i~~~~~~r~~ 149 (180)
T COG2453 72 GIQVLHLPILDGTVPDLEDLDKIVDFIEEALSKG--KKVVVHCQGGIGRSGTVIAAYLMLYGGLSLADEAIAVKRRRRPG 149 (180)
T ss_pred CceeeeeeecCCCCCcHHHHHHHHHHHHHHHhcC--CeEEEEcCCCCchHHHHHHHHHHHHcCCCCHHHHHHHHHhcCCc
Confidence 4458999999999999999999999999887765 59999999999999999999999997777999999999988831
Q ss_pred CCCCccChhHHHHHHHHHHHHh
Q 037030 297 DGKGLVLPSQIRYVKYFERILT 318 (612)
Q Consensus 297 ~~~gv~~PSQ~RYL~Yf~~lL~ 318 (612)
.+..+.|.+|...+.....
T Consensus 150 ---~v~~~~q~~~~~e~~~~~~ 168 (180)
T COG2453 150 ---AVVTEIQHLFELEQELFRK 168 (180)
T ss_pred ---ccccHHHHHHHHHHHHHHh
Confidence 5677888877766655544
No 11
>PF05706 CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3); InterPro: IPR022778 This entry represents a domain found in cyclin-dependent kinase inhibitor 3 or kinase associated phosphatase proteins from several mammalian species. The cyclin-dependent kinase (Cdk)-associated protein phosphatase (KAP) is a human dual specificity protein phosphatase that dephosphorylates Cdk2 on threonine 160 in a cyclin-dependent manner [], []. This domain is also found in MAP kinase phosphatase and esterases. This entry contains both eukaryotic and bacterial proteins.; GO: 0004721 phosphoprotein phosphatase activity, 0004725 protein tyrosine phosphatase activity; PDB: 1FQ1_A 1FPZ_F.
Probab=99.41 E-value=7.4e-13 Score=127.27 Aligned_cols=127 Identities=19% Similarity=0.319 Sum_probs=74.6
Q ss_pred cCCeeeEe-------cceeEeeCCCCCCCCCCCCcchhhhcCCHHHHHHHHHhhCCCeeEEEEccCCc---cCCcCcc--
Q 037030 148 DLDMTYIT-------ENIIAMGFPAGDMSSGFFGYVEGFYRNHMEEVIKFFETYHKDKYKVYNLCSER---LYDASLF-- 215 (612)
Q Consensus 148 dLDltyIT-------~RIIAm~~P~~~~ssg~~~~~E~~yRN~i~dV~~fLe~~h~~~y~V~NLcsEr---~Yd~s~f-- 215 (612)
-|.+.||. .+|..+.+|.-. . ..+|.+++.=+..|... +.-.|+.||... .|....+
T Consensus 26 P~~i~~l~~s~~~~~~~Lglt~~PG~k--------~-~d~~RdL~~DL~~Lk~~--G~~~Vvtl~~~~EL~~l~Vp~L~~ 94 (168)
T PF05706_consen 26 PIQIDWLPLSPVNCSGFLGLTFLPGCK--------F-KDWRRDLQADLERLKDW--GAQDVVTLLTDHELARLGVPDLGE 94 (168)
T ss_dssp ----EEEE-GGGT-SSEEEEES-TT-E--------E-TTEEB-HHHHHHHHHHT--T--EEEE-S-HHHHHHTT-TTHHH
T ss_pred ceeeeeecccccCCcceeeeecCCCcc--------c-ccccchHHHHHHHHHHC--CCCEEEEeCcHHHHHHcCCccHHH
Confidence 35566654 355566677532 2 23455555545666654 355788887432 2443222
Q ss_pred ----cCceEEEeccCCCCCCcHHHHHHHHHHHHHHHHhcCCCeEEEEcCCCCchhHHHHHHHHHHhcCCCCHHHHH
Q 037030 216 ----EGRCVASFPFDDHNCPPIQLITSFCHSAYSWLKEDIENVVVVHCKAGMARTGLMISSLLLYLKFFPTAEESI 287 (612)
Q Consensus 216 ----~gr~V~~~p~pD~~~P~L~~L~~fc~~I~~wL~~d~~nVVVVHCkaGkGRTGtviaayLi~~~~~~taeEAL 287 (612)
.|+.|+||||+|..+|.++.+..++..+..+|..+ +.|+|||++|.||||+|+||+|+..+...++++||
T Consensus 95 ~~~~~Gi~~~h~PI~D~~aPd~~~~~~i~~eL~~~L~~g--~~V~vHC~GGlGRtGlvAAcLLl~L~~~~~p~~AI 168 (168)
T PF05706_consen 95 AAQARGIAWHHLPIPDGSAPDFAAAWQILEELAARLENG--RKVLVHCRGGLGRTGLVAACLLLELGDTMSPEQAI 168 (168)
T ss_dssp HHHHTT-EEEE----TTS---HHHHHHHHHHHHHHHHTT----EEEE-SSSSSHHHHHHHHHHHHH-SSS-HHHHH
T ss_pred HHHHcCCEEEecCccCCCCCCHHHHHHHHHHHHHHHHcC--CEEEEECCCCCCHHHHHHHHHHHHHcCCCChhhcC
Confidence 36679999999999999988889999999999874 78999999999999999999999988767899886
No 12
>PRK12361 hypothetical protein; Provisional
Probab=99.41 E-value=3.9e-12 Score=143.36 Aligned_cols=140 Identities=20% Similarity=0.179 Sum_probs=107.2
Q ss_pred CeeeEecceeEeeCCCCCCCCCCCCcchhhhcCCHHHHHHHHHhhCCCeeEEEEccCCccCC-cCcc-cCceEEEeccCC
Q 037030 150 DMTYITENIIAMGFPAGDMSSGFFGYVEGFYRNHMEEVIKFFETYHKDKYKVYNLCSERLYD-ASLF-EGRCVASFPFDD 227 (612)
Q Consensus 150 DltyIT~RIIAm~~P~~~~ssg~~~~~E~~yRN~i~dV~~fLe~~h~~~y~V~NLcsEr~Yd-~s~f-~gr~V~~~p~pD 227 (612)
.++-|++.++..++|... + ..+|++. +.-.|+||+.|.... ...+ .+..++++|+.|
T Consensus 94 ~~~~I~~~l~lG~~~~a~------------------d-~~~L~~~--gI~~Vldlt~E~~~~~~~~~~~~i~yl~iPi~D 152 (547)
T PRK12361 94 AIQKIDENLYLGCRLFPA------------------D-LEKLKSN--KITAILDVTAEFDGLDWSLTEEDIDYLNIPILD 152 (547)
T ss_pred cceEEcCcEEECCCCCcc------------------c-HHHHHHc--CCCEEEEcccccccccccccccCceEEEeecCC
Confidence 567899999999988532 1 2345443 345899998654321 1122 334589999999
Q ss_pred CCCCcHHHHHHHHHHHHHHHHhcCCCeEEEEcCCCCchhHHHHHHHHHHhcCCCCHHHHHHHHHHhcCCCCCCccChhHH
Q 037030 228 HNCPPIQLITSFCHSAYSWLKEDIENVVVVHCKAGMARTGLMISSLLLYLKFFPTAEESIDYYNQKRCVDGKGLVLPSQI 307 (612)
Q Consensus 228 ~~~P~L~~L~~fc~~I~~wL~~d~~nVVVVHCkaGkGRTGtviaayLi~~~~~~taeEALd~f~~kR~~~~~gv~~PSQ~ 307 (612)
+..|.++.+.+.++.|++.+++ ++.|+|||.+|++||+++++||||+.+...+.+||+++++++|. .....+.|+
T Consensus 153 ~~~p~~~~l~~a~~~i~~~~~~--~~~VlVHC~~G~sRSa~vv~ayLm~~~~~~~~~eA~~~vr~~Rp---~v~~n~~q~ 227 (547)
T PRK12361 153 HSVPTLAQLNQAINWIHRQVRA--NKSVVVHCALGRGRSVLVLAAYLLCKDPDLTVEEVLQQIKQIRK---TARLNKRQL 227 (547)
T ss_pred CCCCcHHHHHHHHHHHHHHHHC--CCeEEEECCCCCCcHHHHHHHHHHHhccCCCHHHHHHHHHHHCC---CCCCCHHHH
Confidence 9999999999999999887764 37899999999999999999999987644599999999999994 233568899
Q ss_pred HHHHHHHH
Q 037030 308 RYVKYFER 315 (612)
Q Consensus 308 RYL~Yf~~ 315 (612)
+.+..|.+
T Consensus 228 ~~l~~~~~ 235 (547)
T PRK12361 228 RALEKMLE 235 (547)
T ss_pred HHHHHHHH
Confidence 98887654
No 13
>smart00012 PTPc_DSPc Protein tyrosine phosphatase, catalytic domain, undefined specificity. Protein tyrosine phosphatases. Homologues detected by this profile and not by those of "PTPc" or "DSPc" are predicted to be protein phosphatases with a similar fold to DSPs and PTPs, yet with unpredicted specificities.
Probab=99.37 E-value=3.9e-12 Score=109.98 Aligned_cols=90 Identities=21% Similarity=0.265 Sum_probs=72.9
Q ss_pred EEEeccCCCCCCcH-HHHHHHHHHHHHHHHhcC-CCeEEEEcCCCCchhHHHHHHHHHHhcC-----CCCHHHHHHHHHH
Q 037030 220 VASFPFDDHNCPPI-QLITSFCHSAYSWLKEDI-ENVVVVHCKAGMARTGLMISSLLLYLKF-----FPTAEESIDYYNQ 292 (612)
Q Consensus 220 V~~~p~pD~~~P~L-~~L~~fc~~I~~wL~~d~-~nVVVVHCkaGkGRTGtviaayLi~~~~-----~~taeEALd~f~~ 292 (612)
+.+.+|||+.+|.. ..+++|++.+..+....+ +++|+|||.+|+||||++|++||+..+. ..+..+++..+++
T Consensus 5 ~~~~~Wpd~~~P~~~~~~~~~~~~v~~~~~~~~~~~pvlVHC~~G~gRtg~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~ 84 (105)
T smart00012 5 YHYTGWPDHGVPESPDSILEFLRAVKKNLNQSSSSGPVVVHCSAGVGRTGTFVALDILLQQLESETGEVDIFQTVKELRK 84 (105)
T ss_pred EeeCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCChhhHHHHHHHHHHHHHhcCCCCCHHHHHHHHHh
Confidence 56779999999965 789999999999987643 5799999999999999999999987653 3467788888888
Q ss_pred hcCCCCCCccChhHHHHHHH
Q 037030 293 KRCVDGKGLVLPSQIRYVKY 312 (612)
Q Consensus 293 kR~~~~~gv~~PSQ~RYL~Y 312 (612)
.|. ..+..+.|+.|++.
T Consensus 85 ~r~---~~~~~~~q~~~~~~ 101 (105)
T smart00012 85 QRP---GMVQTFEQYLFLYR 101 (105)
T ss_pred hhh---hhCCcHHHHHHHHH
Confidence 883 34566778877754
No 14
>smart00404 PTPc_motif Protein tyrosine phosphatase, catalytic domain motif.
Probab=99.37 E-value=3.9e-12 Score=109.98 Aligned_cols=90 Identities=21% Similarity=0.265 Sum_probs=72.9
Q ss_pred EEEeccCCCCCCcH-HHHHHHHHHHHHHHHhcC-CCeEEEEcCCCCchhHHHHHHHHHHhcC-----CCCHHHHHHHHHH
Q 037030 220 VASFPFDDHNCPPI-QLITSFCHSAYSWLKEDI-ENVVVVHCKAGMARTGLMISSLLLYLKF-----FPTAEESIDYYNQ 292 (612)
Q Consensus 220 V~~~p~pD~~~P~L-~~L~~fc~~I~~wL~~d~-~nVVVVHCkaGkGRTGtviaayLi~~~~-----~~taeEALd~f~~ 292 (612)
+.+.+|||+.+|.. ..+++|++.+..+....+ +++|+|||.+|+||||++|++||+..+. ..+..+++..+++
T Consensus 5 ~~~~~Wpd~~~P~~~~~~~~~~~~v~~~~~~~~~~~pvlVHC~~G~gRtg~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~ 84 (105)
T smart00404 5 YHYTGWPDHGVPESPDSILEFLRAVKKNLNQSSSSGPVVVHCSAGVGRTGTFVALDILLQQLESETGEVDIFQTVKELRK 84 (105)
T ss_pred EeeCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCChhhHHHHHHHHHHHHHhcCCCCCHHHHHHHHHh
Confidence 56779999999965 789999999999987643 5799999999999999999999987653 3467788888888
Q ss_pred hcCCCCCCccChhHHHHHHH
Q 037030 293 KRCVDGKGLVLPSQIRYVKY 312 (612)
Q Consensus 293 kR~~~~~gv~~PSQ~RYL~Y 312 (612)
.|. ..+..+.|+.|++.
T Consensus 85 ~r~---~~~~~~~q~~~~~~ 101 (105)
T smart00404 85 QRP---GMVQTFEQYLFLYR 101 (105)
T ss_pred hhh---hhCCcHHHHHHHHH
Confidence 883 34566778877754
No 15
>KOG1719 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=99.31 E-value=7.5e-12 Score=118.26 Aligned_cols=95 Identities=24% Similarity=0.328 Sum_probs=80.2
Q ss_pred CceEEEeccCCC-CCCcHHHHHHHHHHHHHHHHhcCCCeEEEEcCCCCchhHHHHHHHHHHhcCCCCHHHHHHHHHHhcC
Q 037030 217 GRCVASFPFDDH-NCPPIQLITSFCHSAYSWLKEDIENVVVVHCKAGMARTGLMISSLLLYLKFFPTAEESIDYYNQKRC 295 (612)
Q Consensus 217 gr~V~~~p~pD~-~~P~L~~L~~fc~~I~~wL~~d~~nVVVVHCkaGkGRTGtviaayLi~~~~~~taeEALd~f~~kR~ 295 (612)
|.+.+.+|..|. .+|+++.|...++.|++++..+ ..|+||||||++||+||++||||..+.+ ++++|+++++.+|.
T Consensus 75 giE~L~i~T~D~~~~Ps~~~i~~aVeFi~k~asLG--ktvYVHCKAGRtRSaTvV~cYLmq~~~w-tpe~A~~~vr~iRp 151 (183)
T KOG1719|consen 75 GIEFLVIPTRDYTGAPSLENIQKAVEFIHKNASLG--KTVYVHCKAGRTRSATVVACYLMQHKNW-TPEAAVEHVRKIRP 151 (183)
T ss_pred cceeEEeccccccCCCCHHHHHHHHHHHHhccccC--CeEEEEecCCCccchhhhhhhhhhhcCC-CHHHHHHHHHhcCc
Confidence 445677788786 5899999999999999987765 7999999999999999999999998877 99999999999994
Q ss_pred CCCCCccChhHHHHHHHHHHHH
Q 037030 296 VDGKGLVLPSQIRYVKYFERIL 317 (612)
Q Consensus 296 ~~~~gv~~PSQ~RYL~Yf~~lL 317 (612)
+-++-|.|.+-+.-|...+
T Consensus 152 ---~VlL~~~Qw~~l~ef~~~~ 170 (183)
T KOG1719|consen 152 ---RVLLRPAQWDVLKEFYKQI 170 (183)
T ss_pred ---ceeecHHHHHHHHHHHHHH
Confidence 2345699999887555443
No 16
>cd00047 PTPc Protein tyrosine phosphatases (PTP) catalyze the dephosphorylation of phosphotyrosine peptides; they regulate phosphotyrosine levels in signal transduction pathways. The depth of the active site cleft renders the enzyme specific for phosphorylated Tyr (pTyr) residues, instead of pSer or pThr. This family has a distinctive active site signature motif, HCSAGxGRxG. Characterized as either transmembrane, receptor-like or non-transmembrane (soluble) PTPs. Receptor-like PTP domains tend to occur in two copies in the cytoplasmic region of the transmembrane proteins, only one copy may be active.
Probab=99.05 E-value=7.7e-10 Score=110.75 Aligned_cols=87 Identities=18% Similarity=0.233 Sum_probs=71.1
Q ss_pred eccCCCCCCcH-HHHHHHHHHHHHHHHhcCCCeEEEEcCCCCchhHHHHHHHHHHhc----CCCCHHHHHHHHHHhcCCC
Q 037030 223 FPFDDHNCPPI-QLITSFCHSAYSWLKEDIENVVVVHCKAGMARTGLMISSLLLYLK----FFPTAEESIDYYNQKRCVD 297 (612)
Q Consensus 223 ~p~pD~~~P~L-~~L~~fc~~I~~wL~~d~~nVVVVHCkaGkGRTGtviaayLi~~~----~~~taeEALd~f~~kR~~~ 297 (612)
..|+|+.+|+. ..++.|++.+..+......++|+|||.+|.||||++|+++++... ...+..+++..+|+.|.
T Consensus 136 ~~W~d~~~p~~~~~~~~~~~~v~~~~~~~~~~pivVHC~~G~gRsg~~~a~~~~~~~~~~~~~~~~~~~v~~iR~~R~-- 213 (231)
T cd00047 136 TGWPDHGVPESPDSLLDLLRKVRKSQQQPGSGPIVVHCSAGVGRTGTFIAIDILLQRLEAEGVVDIFQTVKELRSQRP-- 213 (231)
T ss_pred CCCCCCCccCChHHHHHHHHHHHHHhccCCCCCeEEECCCCCCccchHHHHHHHHHHHHhcCCCCHHHHHHHHHhccc--
Confidence 45999998854 789999999988764345689999999999999999999876543 23488999999999994
Q ss_pred CCCccChhHHHHHHH
Q 037030 298 GKGLVLPSQIRYVKY 312 (612)
Q Consensus 298 ~~gv~~PSQ~RYL~Y 312 (612)
..+..+.|++|++.
T Consensus 214 -~~v~~~~Qy~f~~~ 227 (231)
T cd00047 214 -GMVQTEEQYIFLYR 227 (231)
T ss_pred -cccCCHHHHHHHHH
Confidence 45678999999864
No 17
>smart00194 PTPc Protein tyrosine phosphatase, catalytic domain.
Probab=99.03 E-value=1e-09 Score=111.91 Aligned_cols=89 Identities=20% Similarity=0.215 Sum_probs=71.6
Q ss_pred EEEeccCCCCCC-cHHHHHHHHHHHHHHHHhcCCCeEEEEcCCCCchhHHHHHHHHHHhc----CCCCHHHHHHHHHHhc
Q 037030 220 VASFPFDDHNCP-PIQLITSFCHSAYSWLKEDIENVVVVHCKAGMARTGLMISSLLLYLK----FFPTAEESIDYYNQKR 294 (612)
Q Consensus 220 V~~~p~pD~~~P-~L~~L~~fc~~I~~wL~~d~~nVVVVHCkaGkGRTGtviaayLi~~~----~~~taeEALd~f~~kR 294 (612)
+....|+|+.+| ....++.|++.+..+... ..++|+|||.+|.||||++|+++++... ...+..+++..+|+.|
T Consensus 161 ~~y~~W~d~~~P~~~~~~~~~i~~v~~~~~~-~~~pivVHC~~G~gRsg~f~a~~~~~~~l~~~~~v~v~~~v~~lR~~R 239 (258)
T smart00194 161 YHYTNWPDHGVPESPKSILDLVRAVRKSQST-STGPIVVHCSAGVGRTGTFIAIDILLQQLEAGKEVDIFEIVKELRSQR 239 (258)
T ss_pred EeeCCCCCCCCCCCHHHHHHHHHHHHHhhcc-CCCCEEEEeCCCCCccchhhHHHHHHHHHHHcCCCCHHHHHHHHHhcc
Confidence 344589999999 678899999999887543 2589999999999999999999877542 2347889999999998
Q ss_pred CCCCCCccChhHHHHHHH
Q 037030 295 CVDGKGLVLPSQIRYVKY 312 (612)
Q Consensus 295 ~~~~~gv~~PSQ~RYL~Y 312 (612)
. ..+..+.|++|++.
T Consensus 240 ~---~~v~~~~Qy~f~~~ 254 (258)
T smart00194 240 P---GMVQTEEQYIFLYR 254 (258)
T ss_pred c---cccCCHHHHHHHHH
Confidence 4 45778899988853
No 18
>PRK15375 pathogenicity island 1 effector protein StpP; Provisional
Probab=98.98 E-value=2.6e-09 Score=117.73 Aligned_cols=93 Identities=20% Similarity=0.259 Sum_probs=71.1
Q ss_pred eccCCCCCCc-HHHHHHHHHHHHHHHHhc-------CCCeEEEEcCCCCchhHHHHHHHHHHhcCCCCHHHHHHHHHHhc
Q 037030 223 FPFDDHNCPP-IQLITSFCHSAYSWLKED-------IENVVVVHCKAGMARTGLMISSLLLYLKFFPTAEESIDYYNQKR 294 (612)
Q Consensus 223 ~p~pD~~~P~-L~~L~~fc~~I~~wL~~d-------~~nVVVVHCkaGkGRTGtviaayLi~~~~~~taeEALd~f~~kR 294 (612)
..||||++|+ ...|+.|++.++.+-... .+...+|||.+|.||||++|||+++...-..+.++.+..+|..|
T Consensus 429 TnWPDHGVPpST~~LleLvr~Vr~~~q~~~~~~~~~nk~~PVVHCSAGVGRTGTFIAi~llk~~~~~sle~IV~dlR~qR 508 (535)
T PRK15375 429 KNWPDHQPLPSTDQLEYLADRVKNSNQNGAPGRSSSDKHLPMIHCLGGVGRTGTMAAALVLKDNPHSNLEQVRADFRNSR 508 (535)
T ss_pred CCCCCCCCCCChHHHHHHHHHHHHhhhcccccccccCCCCceEEcCCCCchHHHHHHHHHHhccccCCHHHHHHHHHhcC
Confidence 4799999874 466888888887764321 11335899999999999999999987555558899999999988
Q ss_pred CCCCCCccChhHHHHHHHHHHHH
Q 037030 295 CVDGKGLVLPSQIRYVKYFERIL 317 (612)
Q Consensus 295 ~~~~~gv~~PSQ~RYL~Yf~~lL 317 (612)
. +..|..+.|+-.|...+.-|
T Consensus 509 n--g~MVQt~eQy~~l~~~~~~~ 529 (535)
T PRK15375 509 N--NRMLEDASQFVQLKAMQAQL 529 (535)
T ss_pred C--ccccccHHHHHHHHHHHHHH
Confidence 3 23578899998887765543
No 19
>KOG0792 consensus Protein tyrosine phosphatase PTPMEG, contains FERM domain [Signal transduction mechanisms]
Probab=98.95 E-value=2.2e-09 Score=124.77 Aligned_cols=93 Identities=25% Similarity=0.331 Sum_probs=66.7
Q ss_pred EeccCCCCCC-cHHHHHHHHHHHHHHHHhcCCCeEEEEcCCCCchhHHHHHH----HHHHhcCCCCHHHHHHHHHHhcCC
Q 037030 222 SFPFDDHNCP-PIQLITSFCHSAYSWLKEDIENVVVVHCKAGMARTGLMISS----LLLYLKFFPTAEESIDYYNQKRCV 296 (612)
Q Consensus 222 ~~p~pD~~~P-~L~~L~~fc~~I~~wL~~d~~nVVVVHCkaGkGRTGtviaa----yLi~~~~~~taeEALd~f~~kR~~ 296 (612)
+.-||||+|| ....++.|+..|..-.. +.+-+|+|||.||+||||++|++ +||.+..--.+-+.++.+|..|
T Consensus 1033 YtaWPDHg~P~D~~~FL~FleevrsvR~-~t~pPilvHCSAGiGRTGVlIl~e~~l~lle~Ne~vdi~divr~mR~QR-- 1109 (1144)
T KOG0792|consen 1033 YTAWPDHGVPDDPNDFLDFLEEVRSVRR-GTNPPILVHCSAGIGRTGVLILMETALCLLEHNEPVDILDIVRTMRDQR-- 1109 (1144)
T ss_pred ecccccCCCCCChHHHHHHHHHHHHHhc-cCCCCeEEEccCCCCcceehHHHHHHHHHHhcCCCCCHHHHHHHHHHHH--
Confidence 3579999999 68889999999976543 33459999999999999999876 4444444324444444444444
Q ss_pred CCCCccChhHHHHHHHHHHHHhhh
Q 037030 297 DGKGLVLPSQIRYVKYFERILTYF 320 (612)
Q Consensus 297 ~~~gv~~PSQ~RYL~Yf~~lL~~~ 320 (612)
...|.+++|++|| |+-||..+
T Consensus 1110 -~~mVQT~~QYkFV--yevil~~l 1130 (1144)
T KOG0792|consen 1110 -AMMVQTLSQYKFV--YEVILRVL 1130 (1144)
T ss_pred -hhhccchHHhhHH--HHHHHHHH
Confidence 3567889999998 55666543
No 20
>PHA02740 protein tyrosine phosphatase; Provisional
Probab=98.88 E-value=8e-09 Score=108.67 Aligned_cols=87 Identities=7% Similarity=0.115 Sum_probs=63.6
Q ss_pred eccCCCCCC-cHHHHHHHHHHHHHHHH-------hcCCCeEEEEcCCCCchhHHHHHHHHHHhcC----CCCHHHHHHHH
Q 037030 223 FPFDDHNCP-PIQLITSFCHSAYSWLK-------EDIENVVVVHCKAGMARTGLMISSLLLYLKF----FPTAEESIDYY 290 (612)
Q Consensus 223 ~p~pD~~~P-~L~~L~~fc~~I~~wL~-------~d~~nVVVVHCkaGkGRTGtviaayLi~~~~----~~taeEALd~f 290 (612)
..|||+++| ....++.|+..+.++.. ....++|||||.+|.||||++||..++..++ .-+..+++..+
T Consensus 184 t~WPd~gvP~~~~~~l~fi~~V~~~~~~~~~~~~~~~~~PIVVHCSaGvGRTGtFcaiDi~l~~~~~~~~vdi~~~V~~l 263 (298)
T PHA02740 184 TAWPADGFSHDPDAFIDFFCNIDDLCADLEKHKADGKIAPIIIDCIDGISSSAVFCVFDICATEFDKTGMLSIANALKKV 263 (298)
T ss_pred cCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHhhccCCCCCEEEECCCCCchhHHHHHHHHHHHHHHhcCcccHHHHHHHH
Confidence 489999999 56778888877765432 1224799999999999999999987665332 23666777777
Q ss_pred HHhcCCCCCCccChhHHHHHHH
Q 037030 291 NQKRCVDGKGLVLPSQIRYVKY 312 (612)
Q Consensus 291 ~~kR~~~~~gv~~PSQ~RYL~Y 312 (612)
|+.|. ..+..+.|+.|++.
T Consensus 264 R~qR~---~~Vqt~~QY~F~y~ 282 (298)
T PHA02740 264 RQKKY---GCMNCLDDYVFCYH 282 (298)
T ss_pred HhhCc---cccCCHHHHHHHHH
Confidence 77773 45677888877753
No 21
>PHA02742 protein tyrosine phosphatase; Provisional
Probab=98.87 E-value=1.1e-08 Score=107.75 Aligned_cols=93 Identities=18% Similarity=0.231 Sum_probs=66.5
Q ss_pred EeccCCCCCC-cHHHHHHHHHHHHHHHHhc----------CCCeEEEEcCCCCchhHHHHHHHHHHhcC----CCCHHHH
Q 037030 222 SFPFDDHNCP-PIQLITSFCHSAYSWLKED----------IENVVVVHCKAGMARTGLMISSLLLYLKF----FPTAEES 286 (612)
Q Consensus 222 ~~p~pD~~~P-~L~~L~~fc~~I~~wL~~d----------~~nVVVVHCkaGkGRTGtviaayLi~~~~----~~taeEA 286 (612)
...|||+++| ....+++|+..+..+.... ..++|||||.+|.||||++||..++...+ ..+..++
T Consensus 188 y~~Wpd~gvP~~~~~~l~~i~~v~~~~~~~~~~~~~~~~~~~~PIvVHCsaGvGRTGtF~aid~~i~~~~~~~~v~v~~~ 267 (303)
T PHA02742 188 YEDWPHGGLPRDPNKFLDFVLAVREADLKADVDIKGENIVKEPPILVHCSAGLDRAGAFCAIDICISKYNERAIIPLLSI 267 (303)
T ss_pred ECCCCCCCcCCCHHHHHHHHHHHHHHhhhccccccccccCCCCCeEEECCCCCchhHHHHHHHHHHHHHHhcCCCCHHHH
Confidence 3489999999 4678888998887753211 23699999999999999999987665332 2256677
Q ss_pred HHHHHHhcCCCCCCccChhHHHHHHHHHHHHhh
Q 037030 287 IDYYNQKRCVDGKGLVLPSQIRYVKYFERILTY 319 (612)
Q Consensus 287 Ld~f~~kR~~~~~gv~~PSQ~RYL~Yf~~lL~~ 319 (612)
+..+|+.|. ..|..+.|+.|++ .-++.+
T Consensus 268 V~~lR~qR~---~~Vqt~~QY~F~y--~~l~~y 295 (303)
T PHA02742 268 VRDLRKQRH---NCLSLPQQYIFCY--FIVLIF 295 (303)
T ss_pred HHHHHhhcc---cccCCHHHHHHHH--HHHHHH
Confidence 777777773 3567777877764 445443
No 22
>PF00102 Y_phosphatase: Protein-tyrosine phosphatase; InterPro: IPR000242 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry repesents several receptor and non-receptor protein-tyrosine phosphatases. Structurally, all known receptor PTPases, are made up of a variable length extracellular domain, followed by a transmembrane region and a C-terminal catalytic cytoplasmic domain. Some of the receptor PTPases contain fibronectin type III (FN-III) repeats, immunoglobulin-like domains, MAM domains or carbonic anhydrase-like domains in their extracellular region. The cytoplasmic region generally contains two copies of the PTPase domain. The first seems to have enzymatic activity, while the second is inactive. The inactive domains of tandem phosphatases can be divided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre []. PTPase domains consist of about 300 amino acids. There are two conserved cysteines, the second one has been shown to be absolutely required for activity. Furthermore, a number of conserved residues in its immediate vicinity have also been shown to be important.; GO: 0004725 protein tyrosine phosphatase activity, 0006470 protein dephosphorylation; PDB: 3O4T_A 3O4S_A 3O4U_A 2A3K_A 2QDP_A 2QDC_A 2QDM_A 2HVL_A 1ZC0_A 3D44_A ....
Probab=98.82 E-value=1.3e-08 Score=100.59 Aligned_cols=88 Identities=20% Similarity=0.297 Sum_probs=71.0
Q ss_pred EEeccCCCCCC-cHHHHHHHHHHHHHHHHhcCCCeEEEEcCCCCchhHHHHHHHHHHhcC----CCCHHHHHHHHHHhcC
Q 037030 221 ASFPFDDHNCP-PIQLITSFCHSAYSWLKEDIENVVVVHCKAGMARTGLMISSLLLYLKF----FPTAEESIDYYNQKRC 295 (612)
Q Consensus 221 ~~~p~pD~~~P-~L~~L~~fc~~I~~wL~~d~~nVVVVHCkaGkGRTGtviaayLi~~~~----~~taeEALd~f~~kR~ 295 (612)
....|+++.+| ....++.|++.+..+. ....++|+|||.+|.||+|++|++.++...+ ..+..+++..+++.|.
T Consensus 139 ~~~~W~~~~~P~~~~~~~~~~~~v~~~~-~~~~~pivVhc~~G~gRsg~f~~~~~~~~~~~~~~~~~v~~~~~~lR~~R~ 217 (235)
T PF00102_consen 139 HYTNWPDDGVPPSPESFLDFIRKVNKSK-DDPNGPIVVHCSDGVGRSGTFCAIDILIEQLKKEGEVDVFEIVKKLRQQRP 217 (235)
T ss_dssp EEESSSSSSSGSSSHHHHHHHHHHHHHH-STTSSEEEEESSSSSHHHHHHHHHHHHHHHHHHHSEECHHHHHHHHHTTST
T ss_pred eeeeccccccccccchhhhhhhhccccc-cCCccceEeecccccccccccccchhhccccccccchhhHHHHHHHHhhCC
Confidence 34589999988 6888999999999887 4567999999999999999999998876543 2377888888888883
Q ss_pred CCCCCccChhHHHHHHH
Q 037030 296 VDGKGLVLPSQIRYVKY 312 (612)
Q Consensus 296 ~~~~gv~~PSQ~RYL~Y 312 (612)
..+..+.|+.|++.
T Consensus 218 ---~~i~~~~qy~f~~~ 231 (235)
T PF00102_consen 218 ---GAIQSPEQYRFCYM 231 (235)
T ss_dssp ---TSSSSHHHHHHHHH
T ss_pred ---CccCCHHHHHHHHH
Confidence 34667888888754
No 23
>KOG0790 consensus Protein tyrosine phosphatase Corkscrew and related SH2 domain enzymes [Signal transduction mechanisms]
Probab=98.80 E-value=2.4e-09 Score=114.99 Aligned_cols=90 Identities=21% Similarity=0.298 Sum_probs=66.1
Q ss_pred EEEeccCCCCCC-cHHHHHHHHHHHHHHHHh-cCCCeEEEEcCCCCchhHHHHHHHHHHh----cCCC---CHHHHHHHH
Q 037030 220 VASFPFDDHNCP-PIQLITSFCHSAYSWLKE-DIENVVVVHCKAGMARTGLMISSLLLYL----KFFP---TAEESIDYY 290 (612)
Q Consensus 220 V~~~p~pD~~~P-~L~~L~~fc~~I~~wL~~-d~~nVVVVHCkaGkGRTGtviaayLi~~----~~~~---taeEALd~f 290 (612)
+...-||||++| ...-++.|+++++.-... -.-++|+|||.||+||||++|..-++.. +... +....|+|+
T Consensus 417 yh~~tWPDHGvP~dPg~vLnFLe~V~~rq~~l~~AgpIvVHCSAGIGrTGTfiViD~lld~I~~~Gldc~iDi~ktIqmV 496 (600)
T KOG0790|consen 417 YHYLTWPDHGVPSDPGGVLNFLEEVNHRQESLMDAGPIVVHCSAGIGRTGTFIVIDMLLDQIREKGLDCDIDIQKTIQMV 496 (600)
T ss_pred hheeecccCCCcCCccHHHHHHHHhhhhhccccccCcEEEEccCCcCCcceEEEhHHHHHHHHhcCCCCcccHHHHHHHH
Confidence 345689999999 567889999999764222 1126999999999999999987765542 2222 556677777
Q ss_pred HHhcCCCCCCccChhHHHHHHH
Q 037030 291 NQKRCVDGKGLVLPSQIRYVKY 312 (612)
Q Consensus 291 ~~kR~~~~~gv~~PSQ~RYL~Y 312 (612)
+..|. ..|.+..|+|||+|
T Consensus 497 RsqRS---GmVQTEaQYkFiY~ 515 (600)
T KOG0790|consen 497 RSQRS---GMVQTEAQYKFIYV 515 (600)
T ss_pred HHHhc---chhhhHHhHHHHHH
Confidence 77773 45678999999975
No 24
>PHA02747 protein tyrosine phosphatase; Provisional
Probab=98.78 E-value=2.8e-08 Score=105.14 Aligned_cols=85 Identities=14% Similarity=0.203 Sum_probs=63.4
Q ss_pred eccCCCCCC-cHHHHHHHHHHHHHHHHhc---------CCCeEEEEcCCCCchhHHHHHHHHHHhc----CCCCHHHHHH
Q 037030 223 FPFDDHNCP-PIQLITSFCHSAYSWLKED---------IENVVVVHCKAGMARTGLMISSLLLYLK----FFPTAEESID 288 (612)
Q Consensus 223 ~p~pD~~~P-~L~~L~~fc~~I~~wL~~d---------~~nVVVVHCkaGkGRTGtviaayLi~~~----~~~taeEALd 288 (612)
..|||+++| ....++.|+..+..+.... ..++|||||.+|.||||++||+.++... ...+..+++.
T Consensus 190 ~~Wpd~~~P~~~~~~l~fi~~v~~~~~~~~~~~~~~~~~~~PIvVHCsaGvGRtGtfcaidi~i~~l~~~~~v~v~~~V~ 269 (312)
T PHA02747 190 SEWFEDETPSDHPDFIKFIKIIDINRKKSGKLFNPKDALLCPIVVHCSDGVGKTGIFCAVDICLNQLVKRKAICLAKTAE 269 (312)
T ss_pred CCCCCCCCCCChHHHHHHHHHHHHHHHHhhccccccccCCCCEEEEecCCCcchhHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 389999999 4667778887776654321 1268999999999999999998765433 2236777788
Q ss_pred HHHHhcCCCCCCccChhHHHHH
Q 037030 289 YYNQKRCVDGKGLVLPSQIRYV 310 (612)
Q Consensus 289 ~f~~kR~~~~~gv~~PSQ~RYL 310 (612)
.+|+.|. ..+..+.|+.|+
T Consensus 270 ~lR~qR~---~~Vqt~~QY~F~ 288 (312)
T PHA02747 270 KIREQRH---AGIMNFDDYLFI 288 (312)
T ss_pred HHHhccc---cccCCHHHHHHH
Confidence 8888773 457788899888
No 25
>PHA02746 protein tyrosine phosphatase; Provisional
Probab=98.77 E-value=3.1e-08 Score=105.34 Aligned_cols=87 Identities=20% Similarity=0.212 Sum_probs=64.6
Q ss_pred EeccCCCCCC-cHHHHHHHHHHHHHHHHh-------cC--CCeEEEEcCCCCchhHHHHHHHHHHhc----CCCCHHHHH
Q 037030 222 SFPFDDHNCP-PIQLITSFCHSAYSWLKE-------DI--ENVVVVHCKAGMARTGLMISSLLLYLK----FFPTAEESI 287 (612)
Q Consensus 222 ~~p~pD~~~P-~L~~L~~fc~~I~~wL~~-------d~--~nVVVVHCkaGkGRTGtviaayLi~~~----~~~taeEAL 287 (612)
...|||+++| ....++.|++.+..+... ++ .++|||||.+|.||||++||..++... ..-+..+++
T Consensus 207 y~~Wpd~gvP~~~~~~l~~i~~v~~~~~~~~~~~~~~~~~~~PIvVHCsaGvGRTGtfcaid~~l~~l~~~~~vdv~~~V 286 (323)
T PHA02746 207 FPDWPDNGIPTGMAEFLELINKVNEEQAELIKQADNDPQTLGPIVVHCSAGIGRAGTFCAIDNALEQLEKEKEVCLGEIV 286 (323)
T ss_pred ECCCCCCCcCCCHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCEEEEcCCCCCcchhHHHHHHHHHHHHhcCCCCHHHHH
Confidence 3489999999 467888999888876432 11 369999999999999999998665432 223667777
Q ss_pred HHHHHhcCCCCCCccChhHHHHHH
Q 037030 288 DYYNQKRCVDGKGLVLPSQIRYVK 311 (612)
Q Consensus 288 d~f~~kR~~~~~gv~~PSQ~RYL~ 311 (612)
..+|+.|. ..|....|+.|++
T Consensus 287 ~~lR~qR~---~~Vqt~~QY~F~y 307 (323)
T PHA02746 287 LKIRKQRH---SSVFLPEQYAFCY 307 (323)
T ss_pred HHHHhccc---ccCCCHHHHHHHH
Confidence 77777773 4567788888875
No 26
>PHA02738 hypothetical protein; Provisional
Probab=98.73 E-value=4.9e-08 Score=103.68 Aligned_cols=92 Identities=22% Similarity=0.323 Sum_probs=66.2
Q ss_pred eccCCCCCC-cHHHHHHHHHHHHHHHHh---------c---CCCeEEEEcCCCCchhHHHHHHHHHHhcC----CCCHHH
Q 037030 223 FPFDDHNCP-PIQLITSFCHSAYSWLKE---------D---IENVVVVHCKAGMARTGLMISSLLLYLKF----FPTAEE 285 (612)
Q Consensus 223 ~p~pD~~~P-~L~~L~~fc~~I~~wL~~---------d---~~nVVVVHCkaGkGRTGtviaayLi~~~~----~~taeE 285 (612)
..|||+++| ....+++|+..|..+... + ..++|||||.+|.||||++||..++...+ ..+..+
T Consensus 185 ~~Wpd~gvP~~~~~~l~fi~~V~~~~~~~~~~~~~~~~~~~~~~PIVVHCs~GiGRtGtFcaidi~i~~~~~~~~vdv~~ 264 (320)
T PHA02738 185 TAWPDHDVPKNTSEFLNFVLEVRQCQKELAQESLQIGHNRLQPPPIVVHCNAGLGRTPCYCVVDISISRFDACATVSIPS 264 (320)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHhhhhhcccCccccCCCCeEEEcCCCCChhhhhhHHHHHHHHHHhcCCcCHHH
Confidence 489999999 466788888888765321 1 13689999999999999999887654332 235677
Q ss_pred HHHHHHHhcCCCCCCccChhHHHHHHHHHHHHhh
Q 037030 286 SIDYYNQKRCVDGKGLVLPSQIRYVKYFERILTY 319 (612)
Q Consensus 286 ALd~f~~kR~~~~~gv~~PSQ~RYL~Yf~~lL~~ 319 (612)
++..+|+.|. ..+..+.|+.|++ .-++.+
T Consensus 265 ~V~~lR~qR~---~~vqt~~QY~F~y--~~l~~y 293 (320)
T PHA02738 265 IVSSIRNQRY---YSLFIPFQYFFCY--RAVKRY 293 (320)
T ss_pred HHHHHHhhhh---hccCCHHHHHHHH--HHHHHH
Confidence 7777777773 4577888888874 444443
No 27
>PF03162 Y_phosphatase2: Tyrosine phosphatase family; InterPro: IPR004861 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents protein-tyrosine phosphatases predominantly from fungi, plants and bacteria, several of which are putative enzymes. These proteins are closely related to the Y-phosphatase and DSPc families. This entry includes the PTPase SIW14 from Saccharomyces cerevisiae (Baker's yeast), which plays a role in actin filament organisation and endocytosis.; PDB: 2Q47_A 1XRI_A.
Probab=98.60 E-value=2.7e-07 Score=89.27 Aligned_cols=138 Identities=18% Similarity=0.279 Sum_probs=71.2
Q ss_pred CCeeeEecceeEeeCCCCCCCCCCCCcchhhhcCCHHHHHHHHHhhCCCeeEEEEccCCcc-CCcCcc---cCceEEEec
Q 037030 149 LDMTYITENIIAMGFPAGDMSSGFFGYVEGFYRNHMEEVIKFFETYHKDKYKVYNLCSERL-YDASLF---EGRCVASFP 224 (612)
Q Consensus 149 LDltyIT~RIIAm~~P~~~~ssg~~~~~E~~yRN~i~dV~~fLe~~h~~~y~V~NLcsEr~-Yd~s~f---~gr~V~~~p 224 (612)
+++..|.+.|+=.++|. ..-..||++.+-. .|+||+.|.. .+...| +++.+.+++
T Consensus 5 ~nF~~V~~~vYRS~~P~-------------------~~n~~fL~~L~LK--TII~L~~e~~~~~~~~f~~~~~I~l~~~~ 63 (164)
T PF03162_consen 5 LNFGMVEPGVYRSAQPT-------------------PANFPFLERLGLK--TIINLRPEPPSQDFLEFAEENGIKLIHIP 63 (164)
T ss_dssp TT-EEEETTEEEESS---------------------HHHHHHHHHHT-S--EEEE--SS---HHHHHHHHHTT-EEEE--
T ss_pred ccccCCCCCccCCCCCC-------------------hhhHHHHHHCCCc--eEEEecCCCCCHHHHHHHhhcCceEEEec
Confidence 35556666666666663 2345688886543 8999976532 222123 466688888
Q ss_pred cCCCCCC----cHHHHHHHHHHHHHHHHhcCCCeEEEEcCCCCchhHHHHHHHHHHhcCCCCHHHHHHHHHHhcCCCCCC
Q 037030 225 FDDHNCP----PIQLITSFCHSAYSWLKEDIENVVVVHCKAGMARTGLMISSLLLYLKFFPTAEESIDYYNQKRCVDGKG 300 (612)
Q Consensus 225 ~pD~~~P----~L~~L~~fc~~I~~wL~~d~~nVVVVHCkaGkGRTGtviaayLi~~~~~~taeEALd~f~~kR~~~~~g 300 (612)
......| +.+.+.++++.+ ....+.+|+|||..|+.|||+||+||-...++ +...+++-|+.-=. .
T Consensus 64 ~~~~~~~~~~~~~~~v~~aL~~i----ld~~n~PvLiHC~~G~~rTG~vvg~lRk~Q~W--~~~~i~~Ey~~f~~----~ 133 (164)
T PF03162_consen 64 MSSSKDPWVPISEEQVAEALEII----LDPRNYPVLIHCNHGKDRTGLVVGCLRKLQGW--SLSSIFDEYRRFAG----P 133 (164)
T ss_dssp -----GGG----HHHHHHHHHHH----H-GGG-SEEEE-SSSSSHHHHHHHHHHHHTTB---HHHHHHHHHHHHG----G
T ss_pred cccccCccccCCHHHHHHHHHHH----hCCCCCCEEEEeCCCCcchhhHHHHHHHHcCC--CHHHHHHHHHHhcC----C
Confidence 8766553 344455555444 22335899999999999999999999988777 77777776653211 1
Q ss_pred ccChhHHHHHHHHHHHH
Q 037030 301 LVLPSQIRYVKYFERIL 317 (612)
Q Consensus 301 v~~PSQ~RYL~Yf~~lL 317 (612)
-....-.+||..|..=+
T Consensus 134 ~~~~~~~~fIe~f~~~~ 150 (164)
T PF03162_consen 134 KIRYLDEQFIELFDVEL 150 (164)
T ss_dssp G--HHHHHHHHT-----
T ss_pred CCcHHHHHHHHhcCcce
Confidence 12244567777776543
No 28
>KOG1716 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=98.57 E-value=1.1e-06 Score=91.94 Aligned_cols=143 Identities=17% Similarity=0.179 Sum_probs=93.0
Q ss_pred CCeeeEecceeEeeCCCCCCCCCCCCcchhhhcCCHHHHHHHHHhhCCCeeEEEEccCCccCCcCccc-CceEEEeccCC
Q 037030 149 LDMTYITENIIAMGFPAGDMSSGFFGYVEGFYRNHMEEVIKFFETYHKDKYKVYNLCSERLYDASLFE-GRCVASFPFDD 227 (612)
Q Consensus 149 LDltyIT~RIIAm~~P~~~~ssg~~~~~E~~yRN~i~dV~~fLe~~h~~~y~V~NLcsEr~Yd~s~f~-gr~V~~~p~pD 227 (612)
.+++-|.++++..+++... ....|... +.-.|+|+..+..-..-.+. +..+.+.+..|
T Consensus 73 ~~~~~i~p~l~lg~~~~~~-------------------~~~~l~~~--~it~vln~~~~~~~~~~~~~~~~~y~~i~~~D 131 (285)
T KOG1716|consen 73 NPIVEILPNLYLGSQGVAS-------------------DPDLLKKL--GITHVLNVSSSCPNPRFLKEQGIKYLRIPVED 131 (285)
T ss_pred CCceeecCCceecCccccc-------------------chhhHHHc--CCCEEEEecccCCccccccccCceEEeccccC
Confidence 5788899999988876321 11223222 34478888433211001122 33467778778
Q ss_pred CCCCcHHH-HHHHHHHHHHHHHhcCCCeEEEEcCCCCchhHHHHHHHHHHhcCCCCHHHHHHHHHHhcCCCCCCccChhH
Q 037030 228 HNCPPIQL-ITSFCHSAYSWLKEDIENVVVVHCKAGMARTGLMISSLLLYLKFFPTAEESIDYYNQKRCVDGKGLVLPSQ 306 (612)
Q Consensus 228 ~~~P~L~~-L~~fc~~I~~wL~~d~~nVVVVHCkaGkGRTGtviaayLi~~~~~~taeEALd~f~~kR~~~~~gv~~PSQ 306 (612)
.....+.. +.+.++.|+..+.. ++.|+|||.+|++|++++++||||+...+ +.++|+++++++|.... ....=
T Consensus 132 ~~~~~i~~~~~~~~~fI~~a~~~--~~~vlVHC~~GvSRSat~viAYlM~~~~~-~l~~A~~~vk~~R~~i~---PN~gf 205 (285)
T KOG1716|consen 132 NPSTDILQHFPEAISFIEKAREK--GGKVLVHCQAGVSRSATLVIAYLMKYEGL-SLEDAYELVKSRRPIIS---PNFGF 205 (285)
T ss_pred CccccHHHHHHHHHHHHHHHHhC--CCeEEEEcCCccchhHHHHHHHHHHHcCC-CHHHHHHHHHHhCCccC---CCHHH
Confidence 66665543 55556666554443 58999999999999999999999998776 99999999999995322 23444
Q ss_pred HHHHHHHHHHHh
Q 037030 307 IRYVKYFERILT 318 (612)
Q Consensus 307 ~RYL~Yf~~lL~ 318 (612)
++-|.-|+..+.
T Consensus 206 ~~QL~~~e~~l~ 217 (285)
T KOG1716|consen 206 LRQLLEFEKRLS 217 (285)
T ss_pred HHHHHHHHHhhc
Confidence 555555665554
No 29
>KOG0791 consensus Protein tyrosine phosphatase, contains fn3 domain [Signal transduction mechanisms]
Probab=98.56 E-value=1.9e-07 Score=99.16 Aligned_cols=101 Identities=19% Similarity=0.233 Sum_probs=70.9
Q ss_pred eEEEeccCCCCCC-cHHHHHHHHHHHHHHHHhcCCCeEEEEcCCCCchhHHHHHHHHHHhcC-CCCHHHHHHHHHHhcCC
Q 037030 219 CVASFPFDDHNCP-PIQLITSFCHSAYSWLKEDIENVVVVHCKAGMARTGLMISSLLLYLKF-FPTAEESIDYYNQKRCV 296 (612)
Q Consensus 219 ~V~~~p~pD~~~P-~L~~L~~fc~~I~~wL~~d~~nVVVVHCkaGkGRTGtviaayLi~~~~-~~taeEALd~f~~kR~~ 296 (612)
.+.++.||||++| +...++.|.+.+..|+... ..+++|||.+|.|||||++|..-+.... .....+.+.++.+.|..
T Consensus 254 ~f~y~~wPd~gvp~~~~sl~~f~~~~r~~~~~~-~~p~iVhCSAGVgRTGTFiald~LLqq~~~~~~vdi~~iv~~lR~~ 332 (374)
T KOG0791|consen 254 HFHYTAWPDFGVPSSTESLLQFVRMVRQSLDTS-KGPTIVHCSAGVGRTGTFIALDRLLQQIDSEETVDIFGVVLELRSA 332 (374)
T ss_pred EEEEeeccccCCCCCchhHHHHHHHHHhhcccC-CCceeEEeecccccccchHhHHHHHHHhcccccccHHHHHHHhhhc
Confidence 4778899999999 6788999999999999876 6899999999999999999986554433 22244455556666654
Q ss_pred CCCCccChhHHHHHHHHHHHHhhhcC
Q 037030 297 DGKGLVLPSQIRYVKYFERILTYFNG 322 (612)
Q Consensus 297 ~~~gv~~PSQ~RYL~Yf~~lL~~~~g 322 (612)
+...|++--|+ ++.+..++....+
T Consensus 333 R~~mVqte~Qy--vfl~~c~~~~l~~ 356 (374)
T KOG0791|consen 333 RMLMVQTEDQY--VFLHQCVLESLQG 356 (374)
T ss_pred cccccchHHHH--HHHHHHHHHHHhC
Confidence 33344444454 5445555543333
No 30
>KOG2386 consensus mRNA capping enzyme, guanylyltransferase (alpha) subunit [RNA processing and modification]
Probab=98.42 E-value=1.1e-06 Score=94.91 Aligned_cols=137 Identities=20% Similarity=0.304 Sum_probs=104.4
Q ss_pred cceeEeeCCCCCCCCCCCCcchhhhcCCHHHHHHHHHhhCCCeeEEEEcc-CCccCCcCcccCceEE--EeccCCCC-CC
Q 037030 156 ENIIAMGFPAGDMSSGFFGYVEGFYRNHMEEVIKFFETYHKDKYKVYNLC-SERLYDASLFEGRCVA--SFPFDDHN-CP 231 (612)
Q Consensus 156 ~RIIAm~~P~~~~ssg~~~~~E~~yRN~i~dV~~fLe~~h~~~y~V~NLc-sEr~Yd~s~f~gr~V~--~~p~pD~~-~P 231 (612)
-|||++-.|.....+ .....+.+|-+-.++...|.++......+..|. .-|.|+......+.+. ..-...+. +|
T Consensus 24 ~rfi~~K~pL~~~~~--~k~~~~~~~f~~~dl~~~l~~~~~~vgl~iDltnt~ryy~~~~~~~~g~~Y~K~~c~g~~~vp 101 (393)
T KOG2386|consen 24 TRFIPFKTPLNSSYS--TKTFPGSQRFQPKDLFELLKEHNYKVGLKIDLTNTLRYYDKPELEERGVKYLKRNCPGRGVVP 101 (393)
T ss_pred ceEEEEecccCCCCC--cCCCCCccccCHHHHHHHHHhcCceEEEEEeccceeeeeccccccccceeEEEeccCCcccCC
Confidence 488888887653211 122344457788899999998866566778874 2356755544433333 33444554 89
Q ss_pred cHHHHHHHHHHHHHHHH--hcCCCeEEEEcCCCCchhHHHHHHHHHHhcCCCCHHHHHHHHHHhcC
Q 037030 232 PIQLITSFCHSAYSWLK--EDIENVVVVHCKAGMARTGLMISSLLLYLKFFPTAEESIDYYNQKRC 295 (612)
Q Consensus 232 ~L~~L~~fc~~I~~wL~--~d~~nVVVVHCkaGkGRTGtviaayLi~~~~~~taeEALd~f~~kR~ 295 (612)
.......|++.+..+.. ..++..|+|||..|+.|||.|||+||+..+.+ +..+|+.+|...|.
T Consensus 102 ~~~~v~~fv~~v~~f~~~~~~~~~LI~vhcthG~NrtgyLI~~yL~~~~~~-s~~~aik~f~~~r~ 166 (393)
T KOG2386|consen 102 RTELVDKFVKLVKGFVDDTKLDDELIGVHCTHGLNRTGYLICAYLADVGGY-SSSEAIKRFADARP 166 (393)
T ss_pred CccchHHHHHHHHHHHhcccCCCCEEEEeCCCcccccceeeeeeeeeccCc-cHHHHHHHHHHhCC
Confidence 99999999999999998 67889999999999999999999999998885 99999999999994
No 31
>KOG1718 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=98.41 E-value=7.5e-06 Score=79.15 Aligned_cols=120 Identities=16% Similarity=0.206 Sum_probs=80.1
Q ss_pred CeeeEecceeEe-eCCCCCCCCCCCCcchhhhcCCHHHHHHHHHhhCCCeeEEEEccCCccCCcCcccCceEEEeccCCC
Q 037030 150 DMTYITENIIAM-GFPAGDMSSGFFGYVEGFYRNHMEEVIKFFETYHKDKYKVYNLCSERLYDASLFEGRCVASFPFDDH 228 (612)
Q Consensus 150 DltyIT~RIIAm-~~P~~~~ssg~~~~~E~~yRN~i~dV~~fLe~~h~~~y~V~NLcsEr~Yd~s~f~gr~V~~~p~pD~ 228 (612)
.|+-||+-++.. |--+. ...+|..+ +..+|+|...|- -+ ..+.+..++..|..|+
T Consensus 16 ~~SqIt~sLfl~~GvaA~--------------------~k~~l~~~--~It~IiNat~E~-pn-~~l~~~qy~kv~~~D~ 71 (198)
T KOG1718|consen 16 GMSQITPSLFLSNGVAAN--------------------DKLLLKKR--KITCIINATTEV-PN-TSLPDIQYMKVPLEDT 71 (198)
T ss_pred chhhcCcceeEecccccc--------------------CHHHHHhc--CceEEEEcccCC-CC-ccCCCceeEEEEcccC
Confidence 678899988876 22111 12344444 467999986442 22 2334445788888887
Q ss_pred CCCcHHHHH-HHHHHHHHHHHhcCCCeEEEEcCCCCchhHHHHHHHHHHhcCCCCHHHHHHHHHHhcCC
Q 037030 229 NCPPIQLIT-SFCHSAYSWLKEDIENVVVVHCKAGMARTGLMISSLLLYLKFFPTAEESIDYYNQKRCV 296 (612)
Q Consensus 229 ~~P~L~~L~-~fc~~I~~wL~~d~~nVVVVHCkaGkGRTGtviaayLi~~~~~~taeEALd~f~~kR~~ 296 (612)
.--.|..-+ .+.+.|+.-. . .++..+|||.||..|++.+|.+|||....+ +..||..+++.+|..
T Consensus 72 p~~~l~~hfD~vAD~I~~v~-~-~gG~TLvHC~AGVSRSAsLClAYLmK~~~m-sLreAy~~vKa~Rpi 137 (198)
T KOG1718|consen 72 PQARLYDHFDPVADKIHSVI-M-RGGKTLVHCVAGVSRSASLCLAYLMKYHCM-SLREAYHWVKARRPI 137 (198)
T ss_pred CcchhhhhhhHHHHHHHHHH-h-cCCcEEEEEccccchhHHHHHHHHHHHccc-hHHHHHHHHHhhCce
Confidence 543333222 2223333322 2 358899999999999999999999987654 999999999999954
No 32
>COG5599 PTP2 Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=98.36 E-value=6.3e-07 Score=91.80 Aligned_cols=85 Identities=25% Similarity=0.289 Sum_probs=57.0
Q ss_pred EeccCCCCCCcHHHHHHHHHHHHHHHHhc-CCCeEEEEcCCCCchhHHHHHHHHHHhcCC------CCH-------HHHH
Q 037030 222 SFPFDDHNCPPIQLITSFCHSAYSWLKED-IENVVVVHCKAGMARTGLMISSLLLYLKFF------PTA-------EESI 287 (612)
Q Consensus 222 ~~p~pD~~~P~L~~L~~fc~~I~~wL~~d-~~nVVVVHCkaGkGRTGtviaayLi~~~~~------~ta-------eEAL 287 (612)
.-.|.|.+.|++..|.++++.+ .... ..++++|||.||.|||||+|+...+.+-.- .+. .+.+
T Consensus 190 y~nW~D~~~p~i~sl~~~~~sl---~~sp~~t~piiVHCSAGvGRTGTFIalD~ll~~~~~~~~~t~~~~~t~D~if~iV 266 (302)
T COG5599 190 YINWVDFNVPDIRSLTEVIHSL---NDSPVRTGPIIVHCSAGVGRTGTFIALDILLRMPNDTLNHTDTWEDTQDLIFQIV 266 (302)
T ss_pred ecCccccCCcCHHHHHHHHHHh---hcCcCCCCCEEEEeccCCCCcceeeeHHHHHhccccccCCCchhhhhhhHHHHHH
Confidence 3479999999666666555554 3222 468999999999999999999876654321 111 2223
Q ss_pred HHHHHhcCCCCCCccChhHHHHHHH
Q 037030 288 DYYNQKRCVDGKGLVLPSQIRYVKY 312 (612)
Q Consensus 288 d~f~~kR~~~~~gv~~PSQ~RYL~Y 312 (612)
.-+|.+|+ +.|+.--|..||+-
T Consensus 267 ~~LRsQRm---kmVQn~~Qf~flY~ 288 (302)
T COG5599 267 LSLRSQRM---KMVQNKTQFKFLYD 288 (302)
T ss_pred HHHHHHHH---HHHHhHHHHHHHHH
Confidence 33455554 67788888888854
No 33
>TIGR01244 conserved hypothetical protein TIGR01244. No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.
Probab=98.27 E-value=1.6e-05 Score=74.34 Aligned_cols=114 Identities=13% Similarity=0.089 Sum_probs=75.4
Q ss_pred eeeEecceeEeeCCCCCCCCCCCCcchhhhcCCHHHHHHHHHhhCCCeeEEEEccCC--ccCCcCc--------ccCceE
Q 037030 151 MTYITENIIAMGFPAGDMSSGFFGYVEGFYRNHMEEVIKFFETYHKDKYKVYNLCSE--RLYDASL--------FEGRCV 220 (612)
Q Consensus 151 ltyIT~RIIAm~~P~~~~ssg~~~~~E~~yRN~i~dV~~fLe~~h~~~y~V~NLcsE--r~Yd~s~--------f~gr~V 220 (612)
+.-|++.+.+.+.|.. +++ ..|... |.-.|+||++. ....+.. -.|..+
T Consensus 2 ~~~i~~~~~~s~qlt~------------------~d~-~~L~~~--GiktVIdlR~~~E~~~~p~~~~~~~~a~~~gl~y 60 (135)
T TIGR01244 2 IRKLTEHLYVSPQLTK------------------ADA-AQAAQL--GFKTVINNRPDREEESQPDFAQIKAAAEAAGVTY 60 (135)
T ss_pred ceEcCCCeeEcCCCCH------------------HHH-HHHHHC--CCcEEEECCCCCCCCCCCCHHHHHHHHHHCCCeE
Confidence 3456777777766632 233 345554 45699999853 2222211 135568
Q ss_pred EEeccCCCCCCcHHHHHHHHHHHHHHHHhcCCCeEEEEcCCCCchhHHHHHHHHHHhcCCCCHHHHHHHHHHhc
Q 037030 221 ASFPFDDHNCPPIQLITSFCHSAYSWLKEDIENVVVVHCKAGMARTGLMISSLLLYLKFFPTAEESIDYYNQKR 294 (612)
Q Consensus 221 ~~~p~pD~~~P~L~~L~~fc~~I~~wL~~d~~nVVVVHCkaGkGRTGtviaayLi~~~~~~taeEALd~f~~kR 294 (612)
+++|+.... ++.+.+..|.+.++ . ..++|++||+.|+ |+|++.+.++...+. +.+++++..+..-
T Consensus 61 ~~iPv~~~~-~~~~~v~~f~~~~~----~-~~~pvL~HC~sG~-Rt~~l~al~~~~~g~--~~~~i~~~~~~~G 125 (135)
T TIGR01244 61 HHQPVTAGD-ITPDDVETFRAAIG----A-AEGPVLAYCRSGT-RSSLLWGFRQAAEGV--PVEEIVRRAQAAG 125 (135)
T ss_pred EEeecCCCC-CCHHHHHHHHHHHH----h-CCCCEEEEcCCCh-HHHHHHHHHHHHcCC--CHHHHHHHHHHcC
Confidence 888877654 35556666665554 2 2488999999999 999999888888664 8888888876654
No 34
>KOG1717 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=98.21 E-value=6.6e-06 Score=84.40 Aligned_cols=113 Identities=19% Similarity=0.255 Sum_probs=77.3
Q ss_pred CeeEEEEccCCc--cCCc-CcccCceEEEeccCCCCCCcHH-HHHHHHHHHHHHHHhcCCCeEEEEcCCCCchhHHHHHH
Q 037030 197 DKYKVYNLCSER--LYDA-SLFEGRCVASFPFDDHNCPPIQ-LITSFCHSAYSWLKEDIENVVVVHCKAGMARTGLMISS 272 (612)
Q Consensus 197 ~~y~V~NLcsEr--~Yd~-s~f~gr~V~~~p~pD~~~P~L~-~L~~fc~~I~~wL~~d~~nVVVVHCkaGkGRTGtviaa 272 (612)
+.-.|+|+.... .|.. ..| .+..+|+.||-.-.|. .+.+.+..|++...+ +.-|+|||-+|+.|+.|++++
T Consensus 197 gI~yviNVTpnlpn~fe~~g~f---~YkqipisDh~Sqnls~ffpEAIsfIdeArsk--~cgvLVHClaGISRSvTvtva 271 (343)
T KOG1717|consen 197 GIKYVINVTPNLPNNFENNGEF---IYKQIPISDHASQNLSQFFPEAISFIDEARSK--NCGVLVHCLAGISRSVTVTVA 271 (343)
T ss_pred CceEEEecCCCCcchhhcCCce---eEEeeeccchhhhhhhhhhHHHHHHHHHhhcc--CCcEEEeeeccccchhHHHHH
Confidence 345789985321 1221 122 3778999998766664 455667777665554 377999999999999999999
Q ss_pred HHHHhcCCCCHHHHHHHHHHhcCCCCCCccChhHHHHHHHHHHHHh
Q 037030 273 LLLYLKFFPTAEESIDYYNQKRCVDGKGLVLPSQIRYVKYFERILT 318 (612)
Q Consensus 273 yLi~~~~~~taeEALd~f~~kR~~~~~gv~~PSQ~RYL~Yf~~lL~ 318 (612)
|||..-.+ +..+|.++++.++.-..+-+..--| |.-|++.|.
T Consensus 272 YLMqkl~l-slndAyd~Vk~kksnisPNFnFMgQ---Lldfertlg 313 (343)
T KOG1717|consen 272 YLMQKLNL-SLNDAYDFVKHKKSNISPNFNFMGQ---LLDFERTLG 313 (343)
T ss_pred HHHHHhcc-chhhHHHHHHHhccCCCCCcchhHH---HHHHHHHhh
Confidence 99997766 9999999999998644433322233 334555554
No 35
>KOG0793 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=98.21 E-value=2e-06 Score=96.92 Aligned_cols=87 Identities=16% Similarity=0.331 Sum_probs=68.5
Q ss_pred EEEeccCCCCCC-cHHHHHHHHHHHHHHHHhcCCCeEEEEcCCCCchhHHHHHHHHHHhcCCCC-----HHHHHHHHHHh
Q 037030 220 VASFPFDDHNCP-PIQLITSFCHSAYSWLKEDIENVVVVHCKAGMARTGLMISSLLLYLKFFPT-----AEESIDYYNQK 293 (612)
Q Consensus 220 V~~~p~pD~~~P-~L~~L~~fc~~I~~wL~~d~~nVVVVHCkaGkGRTGtviaayLi~~~~~~t-----aeEALd~f~~k 293 (612)
++.+.|++.++| +-..|++|-+.+.+..... ..+|+|||.+|-||||+.|..-|+..++... ..-.|+.+|..
T Consensus 895 FHfLSWp~egvPasarslLdFRRKVNK~YRGR-ScpIiVH~sdGaGRTG~YiliDmvl~Rm~kGakeIDIaATlEHlRDQ 973 (1004)
T KOG0793|consen 895 FHFLSWPDEGVPASARSLLDFRRKVNKCYRGR-SCPIIVHCSDGAGRTGTYILIDMVLNRMAKGAKEIDIAATLEHLRDQ 973 (1004)
T ss_pred eeeecccccCCccchHHHHHHHHHhhhhccCC-CCceEEEccCCCCccceeeeHHHHHHHHhccchhhhHHHHHHHHhhc
Confidence 455789999999 6778999999998877644 6899999999999999999998887766433 34457778888
Q ss_pred cCCCCCC-ccChhHHHHHH
Q 037030 294 RCVDGKG-LVLPSQIRYVK 311 (612)
Q Consensus 294 R~~~~~g-v~~PSQ~RYL~ 311 (612)
| .| |.+.-|..|+.
T Consensus 974 R----~GmVaTkdQFef~l 988 (1004)
T KOG0793|consen 974 R----PGMVATKDQFEFAL 988 (1004)
T ss_pred C----CcceeehhhhHHHH
Confidence 8 55 45677777764
No 36
>KOG0789 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=98.16 E-value=5.7e-06 Score=89.57 Aligned_cols=92 Identities=22% Similarity=0.382 Sum_probs=59.9
Q ss_pred EEeccCCCCCCc-HHHHHHHHHHHHHHHHhc-CCCeEEEEcCCCCchhHHHHHHHHHHhcC-----CCCHHHHHHHHHHh
Q 037030 221 ASFPFDDHNCPP-IQLITSFCHSAYSWLKED-IENVVVVHCKAGMARTGLMISSLLLYLKF-----FPTAEESIDYYNQK 293 (612)
Q Consensus 221 ~~~p~pD~~~P~-L~~L~~fc~~I~~wL~~d-~~nVVVVHCkaGkGRTGtviaayLi~~~~-----~~taeEALd~f~~k 293 (612)
.+..|||+.+|. ...++.+++. ..+... ..++++|||.+|.||||++++...+...+ .....+.+..++..
T Consensus 268 ~~~~WPd~~~p~~~~~~l~~~~~--~~~~~~~~~~P~vVhcsaG~gRtgt~v~~~~~~~~~~~~~~~~~~~~~~~~iR~q 345 (415)
T KOG0789|consen 268 HYINWPDHGAPDSVKSILPLLRQ--SVLELRPKQEPIEVHCSAGAGRAGTLVLIEHALIELQGPEGEPPIDEILREIRYQ 345 (415)
T ss_pred eeCCCccccCCcchHHHHHHHHh--hhhhhcCCCCCeEEECCCCCCccchHHHHHHHHHHHhcCCCCccHHHHHHHHHHH
Confidence 445799998885 5556666654 222233 35799999999999999999865333222 33466666667776
Q ss_pred cCCCCCCccChhHHHHHHHHHHHHhh
Q 037030 294 RCVDGKGLVLPSQIRYVKYFERILTY 319 (612)
Q Consensus 294 R~~~~~gv~~PSQ~RYL~Yf~~lL~~ 319 (612)
|. ..+.+..|+.|+ |..++.+
T Consensus 346 R~---~~vqt~~Qy~f~--~~~~~~~ 366 (415)
T KOG0789|consen 346 RP---GAVQSPLQYLFI--YAATLKY 366 (415)
T ss_pred hh---hcccchhHHHHH--HHHHHHH
Confidence 63 456667776666 4445544
No 37
>PLN02727 NAD kinase
Probab=97.87 E-value=4.8e-05 Score=89.44 Aligned_cols=89 Identities=18% Similarity=0.196 Sum_probs=66.1
Q ss_pred HHHHHHHHHhhCCCeeEEEEccCCccCCcCc---------ccCceEEEeccCCCCCCcHHHHHHHHHHHHHHHHhcCCCe
Q 037030 184 MEEVIKFFETYHKDKYKVYNLCSERLYDASL---------FEGRCVASFPFDDHNCPPIQLITSFCHSAYSWLKEDIENV 254 (612)
Q Consensus 184 i~dV~~fLe~~h~~~y~V~NLcsEr~Yd~s~---------f~gr~V~~~p~pD~~~P~L~~L~~fc~~I~~wL~~d~~nV 254 (612)
.+++.. |..+ |--.|+||+.+...+... -.|..++++|+.+...|+.+.+..|.+.+++ .-..+
T Consensus 271 pe~la~-LA~~--GfKTIINLRpd~E~~q~~~~ee~eAae~~GL~yVhIPVs~~~apt~EqVe~fa~~l~~----slpkP 343 (986)
T PLN02727 271 EEGLKW-LLEK--GFKTIVDLRAEIVKDNFYQAAVDDAISSGKIEVVKIPVEVRTAPSAEQVEKFASLVSD----SSKKP 343 (986)
T ss_pred HHHHHH-HHHC--CCeEEEECCCCCcCCCchhHHHHHHHHHcCCeEEEeecCCCCCCCHHHHHHHHHHHHh----hcCCC
Confidence 345544 4443 455899998644321111 1366799999999999999999999888843 22489
Q ss_pred EEEEcCCCCchhHHHHHHHHHHhcC
Q 037030 255 VVVHCKAGMARTGLMISSLLLYLKF 279 (612)
Q Consensus 255 VVVHCkaGkGRTGtviaayLi~~~~ 279 (612)
|+|||+.|.+|+|+|+||||.|.-.
T Consensus 344 VLvHCKSGarRAGamvA~yl~~~~~ 368 (986)
T PLN02727 344 IYLHSKEGVWRTSAMVSRWKQYMTR 368 (986)
T ss_pred EEEECCCCCchHHHHHHHHHHHHcc
Confidence 9999999999999999999998654
No 38
>KOG4228 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=97.85 E-value=6.7e-06 Score=97.30 Aligned_cols=94 Identities=19% Similarity=0.273 Sum_probs=60.2
Q ss_pred EeccCCCCCCc-HHHHHHHHHHHHHHHHhcCCCeEEEEcCCCCchhHHHHHHHHHHhcC-CCCHHHHHHHHHHhcCCCCC
Q 037030 222 SFPFDDHNCPP-IQLITSFCHSAYSWLKEDIENVVVVHCKAGMARTGLMISSLLLYLKF-FPTAEESIDYYNQKRCVDGK 299 (612)
Q Consensus 222 ~~p~pD~~~P~-L~~L~~fc~~I~~wL~~d~~nVVVVHCkaGkGRTGtviaayLi~~~~-~~taeEALd~f~~kR~~~~~ 299 (612)
-..||||++|. ...|+.|++.+..+-.- ..+++||||.||.||||++|+.--|...+ +...-+....++..|..+..
T Consensus 700 Ft~Wpd~gvPe~~t~lL~f~rrvk~~~p~-~aGPiVVHCSAGvGRTG~fi~iDaml~~~~~e~~vdiy~~v~~lR~QR~~ 778 (1087)
T KOG4228|consen 700 FTAWPDHGVPETPTGLLKFRRRVKTFNPP-DAGPIVVHCSAGVGRTGCFIVIDAMLDRLECEGKVDIYGHVKTLRRQRNN 778 (1087)
T ss_pred eccCCCCCCcccchHHHHHHHHhccCCCc-CCCCEEEECCCCCCCcceEEEeHHHHHHHHhhCccceechhHHHHhcccc
Confidence 34799999994 57889999999776411 23899999999999999998764433222 11222333344444433223
Q ss_pred CccChhHHHHHHHHHHHHh
Q 037030 300 GLVLPSQIRYVKYFERILT 318 (612)
Q Consensus 300 gv~~PSQ~RYL~Yf~~lL~ 318 (612)
+..+-.+|+..|+.+|.
T Consensus 779 --mVQt~eQYiFi~~AllE 795 (1087)
T KOG4228|consen 779 --MVQTEEQYIFIHEALLE 795 (1087)
T ss_pred --ccccHHHHHHHHHHHHH
Confidence 34455556666777665
No 39
>PF14566 PTPlike_phytase: Inositol hexakisphosphate; PDB: 1U24_A 2PSZ_B 3MOZ_A 3D1H_B 2B4P_B 3D1Q_A 2B4O_A 3MMJ_B 1U25_A 1U26_B ....
Probab=97.82 E-value=3e-05 Score=73.80 Aligned_cols=57 Identities=26% Similarity=0.360 Sum_probs=39.6
Q ss_pred CceEEEeccCCCCCCcHHHHHHHHHHHHHHHHhcCCCeEEEEcCCCCchhHHHHHHHHHH
Q 037030 217 GRCVASFPFDDHNCPPIQLITSFCHSAYSWLKEDIENVVVVHCKAGMARTGLMISSLLLY 276 (612)
Q Consensus 217 gr~V~~~p~pD~~~P~L~~L~~fc~~I~~wL~~d~~nVVVVHCkaGkGRTGtviaayLi~ 276 (612)
+..+.++|++||..|..+.+..|+..+... .++..+++||.+|+|||.++.++|.|.
T Consensus 92 g~~Y~Ripitd~~~P~~~~iD~fi~~v~~~---p~~~~l~fhC~~G~GRTTt~Mv~~~li 148 (149)
T PF14566_consen 92 GLRYYRIPITDHQAPDPEDIDAFINFVKSL---PKDTWLHFHCQAGRGRTTTFMVMYDLI 148 (149)
T ss_dssp T-EEEEEEE-TTS---HHHHHHHHHHHHTS----TT-EEEEE-SSSSHHHHHHHHHHHHH
T ss_pred CceEEEEeCCCcCCCCHHHHHHHHHHHHhC---CCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 345899999999999988888888887654 224789999999999998877766553
No 40
>KOG1572 consensus Predicted protein tyrosine phosphatase [Defense mechanisms]
Probab=97.49 E-value=0.00078 Score=68.57 Aligned_cols=98 Identities=21% Similarity=0.369 Sum_probs=64.6
Q ss_pred HHHHHhhCCCeeEEEEccCCccCCcCc-----ccCceEEEeccCCCC----CCcHHHHHHHHHHHHHHHHhcCCCeEEEE
Q 037030 188 IKFFETYHKDKYKVYNLCSERLYDASL-----FEGRCVASFPFDDHN----CPPIQLITSFCHSAYSWLKEDIENVVVVH 258 (612)
Q Consensus 188 ~~fLe~~h~~~y~V~NLcsEr~Yd~s~-----f~gr~V~~~p~pD~~----~P~L~~L~~fc~~I~~wL~~d~~nVVVVH 258 (612)
..||+.-| ...|+-||.|. |.... -+++.++++.++... -|...+..+.+..+.+.|-...+.+++||
T Consensus 78 fsFL~~L~--LksIisL~pE~-yp~~nl~f~~~~~Ik~~~i~ie~~k~~~k~P~~~~~~~~i~~~l~~lld~~N~P~Lih 154 (249)
T KOG1572|consen 78 FSFLKTLH--LKSIISLCPEP-YPEENLNFLESNGIKLYQIGIEGEKDNKKEPFVNIPDHSIRKALKVLLDKRNYPILIH 154 (249)
T ss_pred hHHHHHhh--hheEEEecCCC-CChHHHHHHHhcCceEEEEecccccccccCCCCCChHHHHHHHHHHHhcccCCceEEe
Confidence 45776654 34788888664 43221 235568888887765 56555555555555555544557899999
Q ss_pred cCCCCchhHHHHHHHHHHhcCCCCHHHHHHHH
Q 037030 259 CKAGMARTGLMISSLLLYLKFFPTAEESIDYY 290 (612)
Q Consensus 259 CkaGkGRTGtviaayLi~~~~~~taeEALd~f 290 (612)
|+.|+-|||++|.|+--.++++ ..-.++-|
T Consensus 155 c~rGkhRtg~lVgclRklq~W~--lssil~Ey 184 (249)
T KOG1572|consen 155 CKRGKHRTGCLVGCLRKLQNWS--LSSILDEY 184 (249)
T ss_pred cCCCCcchhhhHHHHHHHhccc--hhHHHHHH
Confidence 9999999999999988666663 33344433
No 41
>PF13350 Y_phosphatase3: Tyrosine phosphatase family; PDB: 1YWF_A 2OZ5_B.
Probab=97.49 E-value=0.00026 Score=67.87 Aligned_cols=96 Identities=20% Similarity=0.309 Sum_probs=46.8
Q ss_pred HHHHHhhCCCeeEEEEccCCc--cCCc-CcccCceEEEeccCCCCCCc---HH-----------HH-----------HHH
Q 037030 188 IKFFETYHKDKYKVYNLCSER--LYDA-SLFEGRCVASFPFDDHNCPP---IQ-----------LI-----------TSF 239 (612)
Q Consensus 188 ~~fLe~~h~~~y~V~NLcsEr--~Yd~-s~f~gr~V~~~p~pD~~~P~---L~-----------~L-----------~~f 239 (612)
...|... +.-.|++|+++. ...+ ....+..+.++|+.+..... +. .+ ...
T Consensus 35 ~~~L~~l--gI~tIiDLRs~~E~~~~p~~~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~~ 112 (164)
T PF13350_consen 35 LERLREL--GIRTIIDLRSPTERERAPDPLIDGVQYVHIPIFGDDASSPDKLAELLQSSADAPRGMLEFYREMLESYAEA 112 (164)
T ss_dssp HHHHHHT--T--EEEE-S-HHHHHHHS----TT-EEEE--SS-S-TTH----------HHHHHHHHHHHHHHGGGSTHHH
T ss_pred HHHHHhC--CCCEEEECCCccccccCCCCCcCCceeeeecccccccccccccccccccccchhhHHHHHHHHHHHhhhHH
Confidence 4566644 456999998632 1112 23335557777776544331 10 00 122
Q ss_pred HHHHHHHHHhcCCCeEEEEcCCCCchhHHHHHHHHHHhcCCCCHHHHHH
Q 037030 240 CHSAYSWLKEDIENVVVVHCKAGMARTGLMISSLLLYLKFFPTAEESID 288 (612)
Q Consensus 240 c~~I~~wL~~d~~nVVVVHCkaGkGRTGtviaayLi~~~~~~taeEALd 288 (612)
+..+-.+|...+ +++++||.+||-|||+++|.+|...+. ..++.++
T Consensus 113 ~~~~~~~l~~~~-~p~l~HC~aGKDRTG~~~alll~~lGV--~~~~I~~ 158 (164)
T PF13350_consen 113 YRKIFELLADAP-GPVLFHCTAGKDRTGVVAALLLSLLGV--PDEDIIA 158 (164)
T ss_dssp HHHHHHHHH-TT---EEEE-SSSSSHHHHHHHHHHHHTT----HHHHHH
T ss_pred HHHHHHHhccCC-CcEEEECCCCCccHHHHHHHHHHHcCC--CHHHHHH
Confidence 333334454455 799999999999999999999988776 4454444
No 42
>KOG4228 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=97.20 E-value=0.00046 Score=82.25 Aligned_cols=94 Identities=20% Similarity=0.364 Sum_probs=62.4
Q ss_pred EeccCCCCCCcH--HHHHHHHHHHHHHHHhcCCCeEEEEcCCCCchhHHHHHHHHHHhcCCCCHHHHHHHHH---HhcCC
Q 037030 222 SFPFDDHNCPPI--QLITSFCHSAYSWLKEDIENVVVVHCKAGMARTGLMISSLLLYLKFFPTAEESIDYYN---QKRCV 296 (612)
Q Consensus 222 ~~p~pD~~~P~L--~~L~~fc~~I~~wL~~d~~nVVVVHCkaGkGRTGtviaayLi~~~~~~taeEALd~f~---~kR~~ 296 (612)
...||....|+. ..+..+......|-+.....+++|||.+|.||+|++||+-++..++ ..+..+|+|. ..|..
T Consensus 986 ~~~WP~~~~~p~~~~~~~~i~~~~~~~q~~~~~~P~~Vhc~nG~~rsg~f~ai~~l~e~~--~~e~~vDVfq~vk~Lr~~ 1063 (1087)
T KOG4228|consen 986 FTGWPEYGKPPQSKGPISKIPSVASKWQQLGADGPIIVHCLNGVGRTGTFCAISILLERM--RKEGVVDVFQTVKTLRFQ 1063 (1087)
T ss_pred ecCCcccCcCCCCcchhhhHHHHHHHHHhhcCCCCEEEEEcCCCcceeehHHHHHHHHHH--hhcCceeeehhhhhhhhc
Confidence 347998876643 4566777777888877778999999999999999999987666544 3333333332 22322
Q ss_pred CCCCccChhHHHHHHHHHHHHhh
Q 037030 297 DGKGLVLPSQIRYVKYFERILTY 319 (612)
Q Consensus 297 ~~~gv~~PSQ~RYL~Yf~~lL~~ 319 (612)
+...+...-|+.|+ |+-++.+
T Consensus 1064 rp~mv~t~~QY~fc--Ydv~~~y 1084 (1087)
T KOG4228|consen 1064 RPGMVDTSDQYQFC--YDVALEY 1084 (1087)
T ss_pred CccccCcHHHHHHH--HHHHHHh
Confidence 22334556677776 5555554
No 43
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=96.95 E-value=0.0084 Score=54.64 Aligned_cols=94 Identities=19% Similarity=0.275 Sum_probs=51.0
Q ss_pred CeeeEecceeEeeCCCCCCCCCCCCcchhhhcCCHHHHHHHHHhhCCCeeEEEEccCC--ccCCc--------CcccCce
Q 037030 150 DMTYITENIIAMGFPAGDMSSGFFGYVEGFYRNHMEEVIKFFETYHKDKYKVYNLCSE--RLYDA--------SLFEGRC 219 (612)
Q Consensus 150 DltyIT~RIIAm~~P~~~~ssg~~~~~E~~yRN~i~dV~~fLe~~h~~~y~V~NLcsE--r~Yd~--------s~f~gr~ 219 (612)
|+..|++++.+.+.|.. +++. .|... |--.|+|++.. ..-.+ ..-.|..
T Consensus 1 di~~i~~~~~vs~Q~~~------------------~d~~-~la~~--GfktVInlRpd~E~~~qp~~~~~~~~a~~~Gl~ 59 (110)
T PF04273_consen 1 DIRQISDDLSVSGQPSP------------------EDLA-QLAAQ--GFKTVINLRPDGEEPGQPSSAEEAAAAEALGLQ 59 (110)
T ss_dssp --EEEETTEEEECS--H------------------HHHH-HHHHC--T--EEEE-S-TTSTTT-T-HHCHHHHHHHCT-E
T ss_pred CCEecCCCeEECCCCCH------------------HHHH-HHHHC--CCcEEEECCCCCCCCCCCCHHHHHHHHHHcCCe
Confidence 67889999999998842 2333 33333 44589999732 11111 1124777
Q ss_pred EEEeccCCCCCCcHHHHHHHHHHHHHHHHhcCCCeEEEEcCCCCchhHHHHH
Q 037030 220 VASFPFDDHNCPPIQLITSFCHSAYSWLKEDIENVVVVHCKAGMARTGLMIS 271 (612)
Q Consensus 220 V~~~p~pD~~~P~L~~L~~fc~~I~~wL~~d~~nVVVVHCkaGkGRTGtvia 271 (612)
+.++|+.... ++.+.+..|.+.+.. . ..+|++||+.|. |++.+.+
T Consensus 60 y~~iPv~~~~-~~~~~v~~f~~~l~~----~-~~Pvl~hC~sG~-Ra~~l~~ 104 (110)
T PF04273_consen 60 YVHIPVDGGA-ITEEDVEAFADALES----L-PKPVLAHCRSGT-RASALWA 104 (110)
T ss_dssp EEE----TTT---HHHHHHHHHHHHT----T-TTSEEEE-SCSH-HHHHHHH
T ss_pred EEEeecCCCC-CCHHHHHHHHHHHHh----C-CCCEEEECCCCh-hHHHHHH
Confidence 8999998654 677888888777643 2 368999999998 7766544
No 44
>COG2365 Protein tyrosine/serine phosphatase [Signal transduction mechanisms]
Probab=96.79 E-value=0.0029 Score=65.26 Aligned_cols=42 Identities=29% Similarity=0.414 Sum_probs=31.9
Q ss_pred CCeEEEEcCCCCchhHHHHHHHHHHhcCCCCHHHHHHHHHHhc
Q 037030 252 ENVVVVHCKAGMARTGLMISSLLLYLKFFPTAEESIDYYNQKR 294 (612)
Q Consensus 252 ~nVVVVHCkaGkGRTGtviaayLi~~~~~~taeEALd~f~~kR 294 (612)
+.+|++||.+|+-|||+++|||+...+.. ....+.+++..-+
T Consensus 136 ~~PvL~HC~~GkdRTGl~~al~r~~~~~~-~~~v~~dyl~~~~ 177 (249)
T COG2365 136 NGPVLIHCTAGKDRTGLVAALYRKLVGGS-DETVAADYLLTNR 177 (249)
T ss_pred cCCEEEecCCCCcchHHHHHHHHHHhCCc-hhHHHHHHHHcCC
Confidence 58999999999999999999999998873 2333444444333
No 45
>PF14671 DSPn: Dual specificity protein phosphatase, N-terminal half; PDB: 1OHD_A 1OHE_A 1OHC_A.
Probab=96.13 E-value=0.012 Score=55.98 Aligned_cols=68 Identities=15% Similarity=0.200 Sum_probs=45.7
Q ss_pred cCCCCCCcHHHHHHHHHHHHHHHHhcC-CCeEEEEcCCCCc----hhHHHHHHHHHHhcCCCCHHHHHHHHHHh
Q 037030 225 FDDHNCPPIQLITSFCHSAYSWLKEDI-ENVVVVHCKAGMA----RTGLMISSLLLYLKFFPTAEESIDYYNQK 293 (612)
Q Consensus 225 ~pD~~~P~L~~L~~fc~~I~~wL~~d~-~nVVVVHCkaGkG----RTGtviaayLi~~~~~~taeEALd~f~~k 293 (612)
+.|+++..|.+|.+||..+++-|+... .+..+|||...-. -+++++|||+|..... ++++|+..+...
T Consensus 38 ~~DFGPlnL~~lyrfc~~l~~~L~~~~~~~k~iv~yts~d~~kRaNAA~Lig~y~Vi~l~~-spe~A~~~l~~~ 110 (141)
T PF14671_consen 38 YADFGPLNLAQLYRFCCKLNKKLKSPELKKKKIVHYTSSDPKKRANAAFLIGAYAVIYLGM-SPEEAYKPLASI 110 (141)
T ss_dssp SS------HHHHHHHHHHHHHHHH-GGGTTSEEEEEE-S-HHHHHHHHHHHHHHHHHTS----HHHHHHHHTTT
T ss_pred cCcCCCccHHHHHHHHHHHHHHHcCHHhcCCeEEEECCCChhHHHHHHHHHHHHHHHhcCC-CHHHHHHHHHhc
Confidence 468999999999999999999998732 3778888876432 3688999999876665 999999988665
No 46
>COG5350 Predicted protein tyrosine phosphatase [General function prediction only]
Probab=95.67 E-value=0.045 Score=52.74 Aligned_cols=79 Identities=18% Similarity=0.239 Sum_probs=53.0
Q ss_pred CCCcHHHHHHHHHHHHHHHHhcCCCeEEEEcCCCCchhH--HHHHHHHHHhcCCCCHHHHHHHHHHhcCCCCCCccChhH
Q 037030 229 NCPPIQLITSFCHSAYSWLKEDIENVVVVHCKAGMARTG--LMISSLLLYLKFFPTAEESIDYYNQKRCVDGKGLVLPSQ 306 (612)
Q Consensus 229 ~~P~L~~L~~fc~~I~~wL~~d~~nVVVVHCkaGkGRTG--tviaayLi~~~~~~taeEALd~f~~kR~~~~~gv~~PSQ 306 (612)
..|.-.-+..++..+++|= ...+++|||.+|++||. .+++++-+...+ ...|.-+.++..+..- + .-
T Consensus 73 ~ap~e~Hv~~i~DF~~~wp---~~apllIHC~aGISRStA~A~i~a~ala~~~--de~ela~~Lra~sp~a-----t-PN 141 (172)
T COG5350 73 IAPGEAHVRAIIDFADEWP---RFAPLLIHCYAGISRSTAAALIAALALAPDM--DETELAERLRALSPYA-----T-PN 141 (172)
T ss_pred cCCCHHHHHHHHHHHhcCc---cccceeeeeccccccchHHHHHHHHhhcccc--ChHHHHHHHHhcCccc-----C-CC
Confidence 4676667777778888883 34789999999999974 455666666555 6666666666665211 1 12
Q ss_pred HHHHHHHHHHHh
Q 037030 307 IRYVKYFERILT 318 (612)
Q Consensus 307 ~RYL~Yf~~lL~ 318 (612)
.|-|..+...|.
T Consensus 142 ~RliaI~d~~l~ 153 (172)
T COG5350 142 PRLIAIADAALG 153 (172)
T ss_pred hhHHHHHHHHHh
Confidence 366777777764
No 47
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=93.45 E-value=0.41 Score=41.69 Aligned_cols=79 Identities=19% Similarity=0.189 Sum_probs=43.4
Q ss_pred HHHHHHHHhhCCCeeEEEEccCCccCCcCcccCceEEEeccCCCCCCcHHHHHHHHHHHHHHHHhcCCCeEEEEcCCCCc
Q 037030 185 EEVIKFFETYHKDKYKVYNLCSERLYDASLFEGRCVASFPFDDHNCPPIQLITSFCHSAYSWLKEDIENVVVVHCKAGMA 264 (612)
Q Consensus 185 ~dV~~fLe~~h~~~y~V~NLcsEr~Yd~s~f~gr~V~~~p~pD~~~P~L~~L~~fc~~I~~wL~~d~~nVVVVHCkaGkG 264 (612)
+++...++ .+...|+++++...|...++.+ ..++|+.+ +..+...+...+..+++..|+|+|..| .
T Consensus 7 ~~l~~~~~---~~~~~iiDvR~~~e~~~ghi~g--A~~ip~~~--------~~~~~~~~~~~~~~~~~~~ivvyC~~G-~ 72 (101)
T cd01518 7 AEWNELLE---DPEVVLLDVRNDYEYDIGHFKG--AVNPDVDT--------FREFPFWLDENLDLLKGKKVLMYCTGG-I 72 (101)
T ss_pred HHHHHHHc---CCCEEEEEcCChhhhhcCEecc--ccCCCccc--------HhHhHHHHHhhhhhcCCCEEEEECCCc-h
Confidence 45555554 2357899997655666544443 33445433 222222333333335668899999876 5
Q ss_pred hhHHHHHHHHHHhc
Q 037030 265 RTGLMISSLLLYLK 278 (612)
Q Consensus 265 RTGtviaayLi~~~ 278 (612)
|+.. +|.+|...+
T Consensus 73 rs~~-a~~~L~~~G 85 (101)
T cd01518 73 RCEK-ASAYLKERG 85 (101)
T ss_pred hHHH-HHHHHHHhC
Confidence 6654 444554444
No 48
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=89.23 E-value=2 Score=38.53 Aligned_cols=85 Identities=14% Similarity=0.133 Sum_probs=47.3
Q ss_pred HHHHHHHHhhCCCeeEEEEccCC-------ccCCcCcccCceEEEeccCCC---------CCCcHHHHHHHHHHHHHHHH
Q 037030 185 EEVIKFFETYHKDKYKVYNLCSE-------RLYDASLFEGRCVASFPFDDH---------NCPPIQLITSFCHSAYSWLK 248 (612)
Q Consensus 185 ~dV~~fLe~~h~~~y~V~NLcsE-------r~Yd~s~f~gr~V~~~p~pD~---------~~P~L~~L~~fc~~I~~wL~ 248 (612)
+++...|.. ....|+++++. ..|...++.+ ..++|+.+. ..|+.+.+..++... .
T Consensus 5 ~~l~~~l~~---~~~~ivDvR~~~~~~~~~~~~~~ghI~g--a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 75 (122)
T cd01448 5 DWLAEHLDD---PDVRILDARWYLPDRDGRKEYLEGHIPG--AVFFDLDEDLDDKSPGPHMLPSPEEFAELLGSL----G 75 (122)
T ss_pred HHHHHHhCC---CCeEEEEeecCCCCCchhhHHhhCCCCC--CEEcChhhccccCCCCCCCCCCHHHHHHHHHHc----C
Confidence 344444433 24689999765 4455445544 344555332 223344444443221 2
Q ss_pred hcCCCeEEEEcCCCCchhHHHHHHHHHHhcC
Q 037030 249 EDIENVVVVHCKAGMARTGLMISSLLLYLKF 279 (612)
Q Consensus 249 ~d~~nVVVVHCkaGkGRTGtviaayLi~~~~ 279 (612)
.+++..|+|+|..| |+.+..++.+|...+.
T Consensus 76 ~~~~~~vv~~c~~g-~~~a~~~~~~l~~~G~ 105 (122)
T cd01448 76 ISNDDTVVVYDDGG-GFFAARAWWTLRYFGH 105 (122)
T ss_pred CCCCCEEEEECCCC-CccHHHHHHHHHHcCC
Confidence 34568899999988 6666666666666554
No 49
>PRK01415 hypothetical protein; Validated
Probab=87.22 E-value=4.6 Score=42.05 Aligned_cols=106 Identities=15% Similarity=0.178 Sum_probs=61.0
Q ss_pred eEecceeEeeCCCCCCCCCCCCcchhhhcCCHHHHHHHHHhhCCCeeEEEEccCCccCCcCcccCceEEEeccCCCCCCc
Q 037030 153 YITENIIAMGFPAGDMSSGFFGYVEGFYRNHMEEVIKFFETYHKDKYKVYNLCSERLYDASLFEGRCVASFPFDDHNCPP 232 (612)
Q Consensus 153 yIT~RIIAm~~P~~~~ssg~~~~~E~~yRN~i~dV~~fLe~~h~~~y~V~NLcsEr~Yd~s~f~gr~V~~~p~pD~~~P~ 232 (612)
-|-+.|+.|+.|...... ..+.|- ..+++..+|+. ....|++++....|+...|.+- -.|+
T Consensus 91 r~k~eiV~~g~~~~~~~~-----~~g~~i-~p~e~~~ll~~---~~~vvIDVRn~~E~~~Ghi~gA----------inip 151 (247)
T PRK01415 91 RLKKEIVAMNVDDLNVDL-----FKGEYI-EPKDWDEFITK---QDVIVIDTRNDYEVEVGTFKSA----------INPN 151 (247)
T ss_pred EeeceEEecCCCCCCccc-----cCcccc-CHHHHHHHHhC---CCcEEEECCCHHHHhcCCcCCC----------CCCC
Confidence 466789999987532111 112222 23456666654 3578999975555665555442 2244
Q ss_pred HHHHHHHHHHHHHHHHhcCCCeEEEEcCCCCchhHHHHHHHHHHhcC
Q 037030 233 IQLITSFCHSAYSWLKEDIENVVVVHCKAGMARTGLMISSLLLYLKF 279 (612)
Q Consensus 233 L~~L~~fc~~I~~wL~~d~~nVVVVHCkaGkGRTGtviaayLi~~~~ 279 (612)
+..+.++...+...+....+..|+|+|.+| .|+ ..++++|...+.
T Consensus 152 ~~~f~e~~~~~~~~~~~~k~k~Iv~yCtgG-iRs-~kAa~~L~~~Gf 196 (247)
T PRK01415 152 TKTFKQFPAWVQQNQELLKGKKIAMVCTGG-IRC-EKSTSLLKSIGY 196 (247)
T ss_pred hHHHhhhHHHHhhhhhhcCCCeEEEECCCC-hHH-HHHHHHHHHcCC
Confidence 554444444333334445668899999877 454 566677766554
No 50
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=83.39 E-value=6 Score=34.88 Aligned_cols=78 Identities=17% Similarity=0.131 Sum_probs=42.7
Q ss_pred CHHHHHHHHHhhCCCeeEEEEccCCccCCcCcccCceEEEeccCCCCCCcHHHHHHHHHHHHHHHHhcCCCeEEEEcCCC
Q 037030 183 HMEEVIKFFETYHKDKYKVYNLCSERLYDASLFEGRCVASFPFDDHNCPPIQLITSFCHSAYSWLKEDIENVVVVHCKAG 262 (612)
Q Consensus 183 ~i~dV~~fLe~~h~~~y~V~NLcsEr~Yd~s~f~gr~V~~~p~pD~~~P~L~~L~~fc~~I~~wL~~d~~nVVVVHCkaG 262 (612)
..+++...++.. ..+.|+++++...|...++.+ ..++|+ ..+... + .++..+++..|+|||..|
T Consensus 13 ~~~~l~~~~~~~--~~~~liDvR~~~e~~~ghIpg--ainip~--------~~l~~~---~-~~l~~~~~~~ivv~C~~G 76 (109)
T cd01533 13 SADELAALQARG--APLVVLDGRRFDEYRKMTIPG--SVSCPG--------AELVLR---V-GELAPDPRTPIVVNCAGR 76 (109)
T ss_pred CHHHHHHHHhcC--CCcEEEeCCCHHHHhcCcCCC--ceeCCH--------HHHHHH---H-HhcCCCCCCeEEEECCCC
Confidence 355666666432 246789997655666544443 233332 223222 2 233334457899999887
Q ss_pred CchhHHHHHHHHHHhc
Q 037030 263 MARTGLMISSLLLYLK 278 (612)
Q Consensus 263 kGRTGtviaayLi~~~ 278 (612)
. |+ ..++.+|...+
T Consensus 77 ~-rs-~~a~~~L~~~G 90 (109)
T cd01533 77 T-RS-IIGAQSLINAG 90 (109)
T ss_pred c-hH-HHHHHHHHHCC
Confidence 5 65 44455555444
No 51
>PF04179 Init_tRNA_PT: Initiator tRNA phosphoribosyl transferase ; InterPro: IPR007306 This enzyme (2.4.2 from EC) modifies exclusively the initiator tRNA in position 64 using 5'-phosphoribosyl-1'-pyrophosphate as the modification donor. As the initiator tRNA participates both in the initiation and elongation of translation, the 2'-O-ribosyl phosphate modification discriminates the initiator tRNAs from the elongator tRNAs. ; GO: 0016763 transferase activity, transferring pentosyl groups
Probab=83.16 E-value=5.3 Score=45.06 Aligned_cols=77 Identities=18% Similarity=0.174 Sum_probs=53.4
Q ss_pred eEEEEccCCccCC-cCcccCceEEEeccCCCCCCc--H-HHHHHHHHHHHHHHHhcCCCeEEEEcCCCCchhHHHHHHHH
Q 037030 199 YKVYNLCSERLYD-ASLFEGRCVASFPFDDHNCPP--I-QLITSFCHSAYSWLKEDIENVVVVHCKAGMARTGLMISSLL 274 (612)
Q Consensus 199 y~V~NLcsEr~Yd-~s~f~gr~V~~~p~pD~~~P~--L-~~L~~fc~~I~~wL~~d~~nVVVVHCkaGkGRTGtviaayL 274 (612)
-.|+++ ++..+. ...-....++++|.+.+..-. | ..|..+|..+..+|..+++..|+|+|..|+-.+..++.+.|
T Consensus 320 ~~vI~~-s~~~~~~~~~~~~~~~L~l~i~~~K~gs~~LR~~LP~i~~fv~~~L~~~~~~~iLV~C~sGkDlSVgVaLaIL 398 (451)
T PF04179_consen 320 DCVINC-SESPTPKESWPKSPKYLHLPIPSSKKGSRDLRKALPKICSFVRSHLSSDPGKPILVCCDSGKDLSVGVALAIL 398 (451)
T ss_pred CEEEEc-CCCcccccccCCCceEEeCcCCCCcccHHHHHHHHHHHHHHHHHHhcccCCCcEEEEcCCcchHHHHHHHHHH
Confidence 467776 444332 222223348999998877653 3 35778888888888887789999999999988866666655
Q ss_pred HH
Q 037030 275 LY 276 (612)
Q Consensus 275 i~ 276 (612)
+.
T Consensus 399 c~ 400 (451)
T PF04179_consen 399 CK 400 (451)
T ss_pred HH
Confidence 54
No 52
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=82.50 E-value=5.1 Score=34.63 Aligned_cols=81 Identities=16% Similarity=0.162 Sum_probs=41.7
Q ss_pred HHHHHHHHhhCCCeeEEEEccCCccCCcCcccCceEEEeccCCCCCCcHHHHHHHHHHHHHHHH-hcCCCeEEEEcCCCC
Q 037030 185 EEVIKFFETYHKDKYKVYNLCSERLYDASLFEGRCVASFPFDDHNCPPIQLITSFCHSAYSWLK-EDIENVVVVHCKAGM 263 (612)
Q Consensus 185 ~dV~~fLe~~h~~~y~V~NLcsEr~Yd~s~f~gr~V~~~p~pD~~~P~L~~L~~fc~~I~~wL~-~d~~nVVVVHCkaGk 263 (612)
+++...|+.. ....|++++....|...++.+ -..+|+.+. ...+......++. .+++..|+|+|..|.
T Consensus 4 ~el~~~l~~~--~~~~liDvR~~~e~~~ghi~g--a~~ip~~~~-------~~~~~~~~~~~~~~~~~~~~ivv~C~~G~ 72 (100)
T cd01523 4 EDLYARLLAG--QPLFILDVRNESDYERWKIDG--ENNTPYFDP-------YFDFLEIEEDILDQLPDDQEVTVICAKEG 72 (100)
T ss_pred HHHHHHHHcC--CCcEEEEeCCHHHHhhcccCC--Ccccccccc-------hHHHHHhhHHHHhhCCCCCeEEEEcCCCC
Confidence 4555666543 347889998656676555544 233443321 1111111111111 145578999999873
Q ss_pred chhHHHHHHHHHHhc
Q 037030 264 ARTGLMISSLLLYLK 278 (612)
Q Consensus 264 GRTGtviaayLi~~~ 278 (612)
|+ ..++.+|...+
T Consensus 73 -rs-~~aa~~L~~~G 85 (100)
T cd01523 73 -SS-QFVAELLAERG 85 (100)
T ss_pred -cH-HHHHHHHHHcC
Confidence 65 44555554444
No 53
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=82.25 E-value=7.1 Score=41.86 Aligned_cols=108 Identities=17% Similarity=0.161 Sum_probs=60.2
Q ss_pred eeEecceeEeeCCCCCCCCCCCCcchhhhcCCHHHHHHHHHhhCCCeeEEEEccCCccCCcCcccCceEEEeccCCCCCC
Q 037030 152 TYITENIIAMGFPAGDMSSGFFGYVEGFYRNHMEEVIKFFETYHKDKYKVYNLCSERLYDASLFEGRCVASFPFDDHNCP 231 (612)
Q Consensus 152 tyIT~RIIAm~~P~~~~ssg~~~~~E~~yRN~i~dV~~fLe~~h~~~y~V~NLcsEr~Yd~s~f~gr~V~~~p~pD~~~P 231 (612)
.-+...|+.|+++.. +.++.+..-.-..+++...|+. +...|++++....|...+|.| ..++|
T Consensus 89 ~~~~~eLv~~G~d~~-----v~~~~~~~~~is~~el~~~l~~---~~~vlIDVR~~~E~~~GhI~G--Ai~ip------- 151 (314)
T PRK00142 89 VKVRKEIVALGLDDD-----IDPLENVGTYLKPKEVNELLDD---PDVVFIDMRNDYEYEIGHFEN--AIEPD------- 151 (314)
T ss_pred eeeeeeeeecCCCCC-----CCccccCCcccCHHHHHHHhcC---CCeEEEECCCHHHHhcCcCCC--CEeCC-------
Confidence 567778899998511 1122222223345666666653 347899997544566555554 23333
Q ss_pred cHHHHHHHHHHHHHHHHhcCCCeEEEEcCCCCchhHHHHHHHHHHhcC
Q 037030 232 PIQLITSFCHSAYSWLKEDIENVVVVHCKAGMARTGLMISSLLLYLKF 279 (612)
Q Consensus 232 ~L~~L~~fc~~I~~wL~~d~~nVVVVHCkaGkGRTGtviaayLi~~~~ 279 (612)
+..+..+...+...+...++..|+|||.+| .|+ ..++.||...+.
T Consensus 152 -~~~~~~~~~~l~~~~~~~kdk~IvvyC~~G-~Rs-~~aa~~L~~~Gf 196 (314)
T PRK00142 152 -IETFREFPPWVEENLDPLKDKKVVMYCTGG-IRC-EKASAWMKHEGF 196 (314)
T ss_pred -HHHhhhhHHHHHHhcCCCCcCeEEEECCCC-cHH-HHHHHHHHHcCC
Confidence 333333433333333334567999999876 455 445667766543
No 54
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=80.36 E-value=8.6 Score=34.67 Aligned_cols=85 Identities=11% Similarity=0.117 Sum_probs=47.3
Q ss_pred HHHHHHHHhhCCCeeEEEEccCCccCC-cCcccCceEEEeccCCCCCCcHHHHHHHHHHHHHHHHhcCCCeEEEEcCCCC
Q 037030 185 EEVIKFFETYHKDKYKVYNLCSERLYD-ASLFEGRCVASFPFDDHNCPPIQLITSFCHSAYSWLKEDIENVVVVHCKAGM 263 (612)
Q Consensus 185 ~dV~~fLe~~h~~~y~V~NLcsEr~Yd-~s~f~gr~V~~~p~pD~~~P~L~~L~~fc~~I~~wL~~d~~nVVVVHCkaGk 263 (612)
+++...|+.. .++.|++++++..|. ...+.+ -.++|+.+...+... ..+...+...+ +++..|+|+|..|.
T Consensus 4 ~el~~~l~~~--~~~~vIDvR~~~e~~~~ghIpg--A~~ip~~~~~~~~~~--~~~~~~l~~~~--~~~~~ivv~C~~G~ 75 (117)
T cd01522 4 AEAWALLQAD--PQAVLVDVRTEAEWKFVGGVPD--AVHVAWQVYPDMEIN--PNFLAELEEKV--GKDRPVLLLCRSGN 75 (117)
T ss_pred HHHHHHHHhC--CCeEEEECCCHHHHhcccCCCC--ceecchhhccccccC--HHHHHHHHhhC--CCCCeEEEEcCCCc
Confidence 4566666652 357899998766777 666655 456666543211111 12222222222 45678999998874
Q ss_pred chhHHHHHHHHHHhcC
Q 037030 264 ARTGLMISSLLLYLKF 279 (612)
Q Consensus 264 GRTGtviaayLi~~~~ 279 (612)
|+. .++.+|...+.
T Consensus 76 -rs~-~aa~~L~~~G~ 89 (117)
T cd01522 76 -RSI-AAAEAAAQAGF 89 (117)
T ss_pred -cHH-HHHHHHHHCCC
Confidence 554 44555555443
No 55
>KOG4471 consensus Phosphatidylinositol 3-phosphate 3-phosphatase myotubularin MTM1 [Lipid transport and metabolism; Intracellular trafficking, secretion, and vesicular transport]
Probab=78.99 E-value=5 Score=46.28 Aligned_cols=70 Identities=23% Similarity=0.428 Sum_probs=38.7
Q ss_pred CCCeEEEEcCCCCchhHHHHHHH-HHHhcCCCCH--HHHHH---H--HH---HhcCCCC---CCc--cChhHHHHHHHHH
Q 037030 251 IENVVVVHCKAGMARTGLMISSL-LLYLKFFPTA--EESID---Y--YN---QKRCVDG---KGL--VLPSQIRYVKYFE 314 (612)
Q Consensus 251 ~~nVVVVHCkaGkGRTGtviaay-Li~~~~~~ta--eEALd---~--f~---~kR~~~~---~gv--~~PSQ~RYL~Yf~ 314 (612)
.+..|+|||..|+-||+-+++.- ||.--.+.|. .++|- + |. .-|.-.+ .+. ..|-=++||....
T Consensus 373 ~~~sVlVHCSDGWDRT~QlvsLA~LlLDpYYRTieGFqvLVEkeWLsFGHkFadRvGhg~ns~~~ndrsPVFLQwlDcV~ 452 (717)
T KOG4471|consen 373 ESRSVLVHCSDGWDRTAQLVSLAMLLLDPYYRTIEGFQVLVEKEWLSFGHKFADRVGHGNNSHGDNDRSPVFLQWLDCVW 452 (717)
T ss_pred CCceEEEEcCCCccchHHHHHHHHHHhchhhhhhhhhHHHHHHHHHhcCChhhhhcCCCCCcccccccCchhHHHHHHHH
Confidence 35789999999999999876542 2222222121 22221 1 11 1121111 111 3477788899888
Q ss_pred HHHhhh
Q 037030 315 RILTYF 320 (612)
Q Consensus 315 ~lL~~~ 320 (612)
++.++|
T Consensus 453 Ql~rqf 458 (717)
T KOG4471|consen 453 QLMRQF 458 (717)
T ss_pred HHHHhC
Confidence 888855
No 56
>PLN02160 thiosulfate sulfurtransferase
Probab=78.96 E-value=4.8 Score=37.70 Aligned_cols=86 Identities=14% Similarity=0.278 Sum_probs=45.9
Q ss_pred CHHHHHHHHHhhCCCeeEEEEccCCccCCcCcccCceEEEeccCCCCCCcHHHH--HHHHHHHHHHHHhcCCCeEEEEcC
Q 037030 183 HMEEVIKFFETYHKDKYKVYNLCSERLYDASLFEGRCVASFPFDDHNCPPIQLI--TSFCHSAYSWLKEDIENVVVVHCK 260 (612)
Q Consensus 183 ~i~dV~~fLe~~h~~~y~V~NLcsEr~Yd~s~f~gr~V~~~p~pD~~~P~L~~L--~~fc~~I~~wL~~d~~nVVVVHCk 260 (612)
..+++...++. + ..|++++....|...++.+-.+..+||.++. |. ..+ ..+...+...+ +++..|+|||.
T Consensus 18 ~~~e~~~~~~~---~-~~lIDVR~~~E~~~ghIpgA~~iniP~~~~~-~~-~~l~~~~~~~~~~~~~--~~~~~IivyC~ 89 (136)
T PLN02160 18 DVSQAKTLLQS---G-HQYLDVRTQDEFRRGHCEAAKIVNIPYMLNT-PQ-GRVKNQEFLEQVSSLL--NPADDILVGCQ 89 (136)
T ss_pred CHHHHHHHHhC---C-CEEEECCCHHHHhcCCCCCcceecccchhcC-cc-cccCCHHHHHHHHhcc--CCCCcEEEECC
Confidence 34566666653 2 3688998666787666655323567764432 11 111 12222222222 45578999998
Q ss_pred CCCchhHHHHHHHHHHhc
Q 037030 261 AGMARTGLMISSLLLYLK 278 (612)
Q Consensus 261 aGkGRTGtviaayLi~~~ 278 (612)
.| .|+... +..|...+
T Consensus 90 sG-~RS~~A-a~~L~~~G 105 (136)
T PLN02160 90 SG-ARSLKA-TTELVAAG 105 (136)
T ss_pred Cc-HHHHHH-HHHHHHcC
Confidence 77 566544 44444433
No 57
>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family.; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....
Probab=78.86 E-value=7.8 Score=33.35 Aligned_cols=79 Identities=19% Similarity=0.335 Sum_probs=45.4
Q ss_pred HHHHHHHHhhCCCeeEEEEccCCccCCcCcccCceEEEeccCCC----CCCcHHHHHHHHHHHHHHHHhcCCCeEEEEcC
Q 037030 185 EEVIKFFETYHKDKYKVYNLCSERLYDASLFEGRCVASFPFDDH----NCPPIQLITSFCHSAYSWLKEDIENVVVVHCK 260 (612)
Q Consensus 185 ~dV~~fLe~~h~~~y~V~NLcsEr~Yd~s~f~gr~V~~~p~pD~----~~P~L~~L~~fc~~I~~wL~~d~~nVVVVHCk 260 (612)
+++...| ....++|+++++...|...++.+ -.++||+.. .......+..++..... ..+....|||+|.
T Consensus 3 ~el~~~l---~~~~~~liD~R~~~~~~~~hI~g--a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~iv~yc~ 75 (113)
T PF00581_consen 3 EELKEML---ENESVLLIDVRSPEEYERGHIPG--AVNIPFPSLDPDEPSLSEDKLDEFLKELGK--KIDKDKDIVFYCS 75 (113)
T ss_dssp HHHHHHH---TTTTEEEEEESSHHHHHHSBETT--EEEEEGGGGSSSSSBCHHHHHHHHHHHHTH--GSTTTSEEEEEES
T ss_pred HHHHhhh---hCCCeEEEEeCCHHHHHcCCCCC--Cccccccccccccccccccccccccccccc--cccccccceeeee
Confidence 4566666 33578999998766787777665 477787443 22233334433333221 2244568999995
Q ss_pred CCCchhHHHHH
Q 037030 261 AGMARTGLMIS 271 (612)
Q Consensus 261 aGkGRTGtvia 271 (612)
.|. |++.+++
T Consensus 76 ~~~-~~~~~~~ 85 (113)
T PF00581_consen 76 SGW-RSGSAAA 85 (113)
T ss_dssp SSC-HHHHHHH
T ss_pred ccc-ccchhHH
Confidence 443 4444433
No 58
>PF06602 Myotub-related: Myotubularin-like phosphatase domain; InterPro: IPR010569 This family represents a region within eukaryotic myotubularin-related proteins that is sometimes found with IPR004182 from INTERPRO. Myotubularin is a dual-specific lipid phosphatase that dephosphorylates phosphatidylinositol 3-phosphate and phosphatidylinositol (3,5)-bi-phosphate []. Mutations in gene encoding myotubularin-related proteins have been associated with disease [].; GO: 0016791 phosphatase activity, 0016311 dephosphorylation; PDB: 1M7R_B 1LW3_A 1ZVR_A 1ZSQ_A 2YF0_A.
Probab=78.20 E-value=4.7 Score=43.92 Aligned_cols=22 Identities=36% Similarity=0.527 Sum_probs=17.2
Q ss_pred CCCeEEEEcCCCCchhHHHHHH
Q 037030 251 IENVVVVHCKAGMARTGLMISS 272 (612)
Q Consensus 251 ~~nVVVVHCkaGkGRTGtviaa 272 (612)
.+..|+|||..|+.||..+++.
T Consensus 230 ~~~~Vlvh~~dGwDrt~q~~sL 251 (353)
T PF06602_consen 230 EGSSVLVHCSDGWDRTSQLSSL 251 (353)
T ss_dssp T--EEEEECTTSSSHHHHHHHH
T ss_pred cCceEEEEcCCCCcccHHHHHH
Confidence 4678999999999999877654
No 59
>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily. This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.
Probab=76.51 E-value=8.7 Score=33.25 Aligned_cols=84 Identities=15% Similarity=0.192 Sum_probs=42.9
Q ss_pred HHHHHHHHhhCCCeeEEEEccCCccCCcCcccCceEEEeccCCC---CCCcHHHHHHHHHHHHHHHHhcCCCeEEEEcCC
Q 037030 185 EEVIKFFETYHKDKYKVYNLCSERLYDASLFEGRCVASFPFDDH---NCPPIQLITSFCHSAYSWLKEDIENVVVVHCKA 261 (612)
Q Consensus 185 ~dV~~fLe~~h~~~y~V~NLcsEr~Yd~s~f~gr~V~~~p~pD~---~~P~L~~L~~fc~~I~~wL~~d~~nVVVVHCka 261 (612)
+++...|+ ..+...|++++....|...++.+ ..++|+.+. ..++.+.+..++ .++....+..|+|+|..
T Consensus 4 ~~~~~~l~--~~~~~~iiDvR~~~e~~~ghIpg--A~~ip~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~ivv~c~~ 75 (106)
T cd01519 4 EEVKNLPN--PHPNKVLIDVREPEELKTGKIPG--AINIPLSSLPDALALSEEEFEKKY----GFPKPSKDKELIFYCKA 75 (106)
T ss_pred HHHHHhcC--CCCCEEEEECCCHHHHhcCcCCC--cEEechHHhhhhhCCCHHHHHHHh----cccCCCCCCeEEEECCC
Confidence 44555543 12357899997655676655554 345555431 111122222211 12222345789999987
Q ss_pred CCchhHHHHHHHHHHhc
Q 037030 262 GMARTGLMISSLLLYLK 278 (612)
Q Consensus 262 GkGRTGtviaayLi~~~ 278 (612)
|. |+ ..++.+|...+
T Consensus 76 g~-~s-~~~~~~l~~~G 90 (106)
T cd01519 76 GV-RS-KAAAELARSLG 90 (106)
T ss_pred cH-HH-HHHHHHHHHcC
Confidence 64 54 44444554444
No 60
>PRK05320 rhodanese superfamily protein; Provisional
Probab=75.91 E-value=14 Score=38.63 Aligned_cols=108 Identities=17% Similarity=0.172 Sum_probs=58.7
Q ss_pred EecceeEeeCCCCCCCCCCCCcchhhhcCCHHHHHHHHHhhCC---CeeEEEEccCCccCCcCcccCceEEEeccCCCCC
Q 037030 154 ITENIIAMGFPAGDMSSGFFGYVEGFYRNHMEEVIKFFETYHK---DKYKVYNLCSERLYDASLFEGRCVASFPFDDHNC 230 (612)
Q Consensus 154 IT~RIIAm~~P~~~~ssg~~~~~E~~yRN~i~dV~~fLe~~h~---~~y~V~NLcsEr~Yd~s~f~gr~V~~~p~pD~~~ 230 (612)
+-+-|++|+.|......|. .-.-...++...++..+. ....|++++....|...+|.+- ++
T Consensus 90 ~k~eiv~~g~~~~n~~~~~------~~~is~~el~~~l~~~~~~~~~~~vlIDVR~~~E~~~Ghi~GA--in-------- 153 (257)
T PRK05320 90 LKREIITMKRPAIRPELGR------APSVDAATLKRWLDQGHDDAGRPVVMLDTRNAFEVDVGTFDGA--LD-------- 153 (257)
T ss_pred hhhHHhhcCCcccCcccCc------CceeCHHHHHHHHhccccccCCCeEEEECCCHHHHccCccCCC--Ee--------
Confidence 4456777887754321111 111234566666665321 2468899975556665555442 22
Q ss_pred CcHHHHHHHHHHHHHHHHhcCCCeEEEEcCCCCchhHHHHHHHHHHhcC
Q 037030 231 PPIQLITSFCHSAYSWLKEDIENVVVVHCKAGMARTGLMISSLLLYLKF 279 (612)
Q Consensus 231 P~L~~L~~fc~~I~~wL~~d~~nVVVVHCkaGkGRTGtviaayLi~~~~ 279 (612)
+++..+..+...+..++....+..|+|+|..|. |+ ..++.+|...++
T Consensus 154 iPl~~f~~~~~~l~~~~~~~kdk~IvvyC~~G~-Rs-~~Aa~~L~~~Gf 200 (257)
T PRK05320 154 YRIDKFTEFPEALAAHRADLAGKTVVSFCTGGI-RC-EKAAIHMQEVGI 200 (257)
T ss_pred CChhHhhhhHHHHHhhhhhcCCCeEEEECCCCH-HH-HHHHHHHHHcCC
Confidence 334555554444444433234578999999873 44 456667765543
No 61
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=72.60 E-value=8.7 Score=32.94 Aligned_cols=77 Identities=17% Similarity=0.153 Sum_probs=39.4
Q ss_pred HHHHhhCCCeeEEEEccCCccCCcCcccCceEEEeccCCCCCCcHHHHHHHHHHHHHHHHhcCCCeEEEEcCCCCchhHH
Q 037030 189 KFFETYHKDKYKVYNLCSERLYDASLFEGRCVASFPFDDHNCPPIQLITSFCHSAYSWLKEDIENVVVVHCKAGMARTGL 268 (612)
Q Consensus 189 ~fLe~~h~~~y~V~NLcsEr~Yd~s~f~gr~V~~~p~pD~~~P~L~~L~~fc~~I~~wL~~d~~nVVVVHCkaGkGRTGt 268 (612)
..|.. +...+.|++++.+..|...++.+ -+++|+.+.. +.... +..+-...++..|+|+|..| +|++.
T Consensus 4 ~~l~~-~~~~~~iiDvR~~~~~~~~hIpg--A~~ip~~~~~-~~~~~-------~~~~~~~~~~~~ivv~c~~g-~~s~~ 71 (96)
T cd01529 4 DWLGE-HEPGTALLDVRAEDEYAAGHLPG--KRSIPGAALV-LRSQE-------LQALEAPGRATRYVLTCDGS-LLARF 71 (96)
T ss_pred HHHhc-CCCCeEEEeCCCHHHHcCCCCCC--cEeCCHHHhc-CCHHH-------HHHhhcCCCCCCEEEEeCCh-HHHHH
Confidence 34444 34457899997655676655554 3445543211 11111 11111124557899999755 46644
Q ss_pred HHHHHHHHhc
Q 037030 269 MISSLLLYLK 278 (612)
Q Consensus 269 viaayLi~~~ 278 (612)
++.+|...+
T Consensus 72 -~~~~l~~~G 80 (96)
T cd01529 72 -AAQELLALG 80 (96)
T ss_pred -HHHHHHHcC
Confidence 344554444
No 62
>cd01443 Cdc25_Acr2p Cdc25 enzymes are members of the Rhodanese Homology Domain (RHOD) superfamily. Also included in this CD are eukaryotic arsenate resistance proteins such as Saccharomyces cerevisiae Acr2p and similar proteins. Cdc25 phosphatases activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. The Cdc25 and Acr2p RHOD domains have the signature motif (H/YCxxxxxR).
Probab=72.49 E-value=34 Score=30.31 Aligned_cols=75 Identities=15% Similarity=0.258 Sum_probs=38.5
Q ss_pred HHHHHHHHHhhC---CCeeEEEEccCCccCCcCcccCceEEEeccCCCCCCcHHHHHHHHHHHHHHHHhcCCCeEEEEcC
Q 037030 184 MEEVIKFFETYH---KDKYKVYNLCSERLYDASLFEGRCVASFPFDDHNCPPIQLITSFCHSAYSWLKEDIENVVVVHCK 260 (612)
Q Consensus 184 i~dV~~fLe~~h---~~~y~V~NLcsEr~Yd~s~f~gr~V~~~p~pD~~~P~L~~L~~fc~~I~~wL~~d~~nVVVVHCk 260 (612)
.+++...++... .....|++++.. .|...++.+ .+++|+.+ +...+..+...+......+|+|||.
T Consensus 6 ~~el~~~l~~~~~~~~~~~~iiDvR~~-ef~~ghipg--Ai~ip~~~--------~~~~~~~~~~~~~~~~~~~iv~~C~ 74 (113)
T cd01443 6 PEELVALLENSDSNAGKDFVVVDLRRD-DYEGGHIKG--SINLPAQS--------CYQTLPQVYALFSLAGVKLAIFYCG 74 (113)
T ss_pred HHHHHHHHhCCccccCCcEEEEECCch-hcCCCcccC--ceecchhH--------HHHHHHHHHHHhhhcCCCEEEEECC
Confidence 456667665530 135788998644 554444433 33444322 2222222222233334468999999
Q ss_pred CCCchhHHH
Q 037030 261 AGMARTGLM 269 (612)
Q Consensus 261 aGkGRTGtv 269 (612)
.|-.|+..+
T Consensus 75 ~~g~rs~~a 83 (113)
T cd01443 75 SSQGRGPRA 83 (113)
T ss_pred CCCcccHHH
Confidence 765665443
No 63
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=72.37 E-value=10 Score=31.46 Aligned_cols=76 Identities=21% Similarity=0.308 Sum_probs=39.1
Q ss_pred CeeEEEEccCCccCCcCcccCceEEEeccCCCCCC--cHHHHHHHHHHHHHHHHhcCCCeEEEEcCCCCchhHHHHHHHH
Q 037030 197 DKYKVYNLCSERLYDASLFEGRCVASFPFDDHNCP--PIQLITSFCHSAYSWLKEDIENVVVVHCKAGMARTGLMISSLL 274 (612)
Q Consensus 197 ~~y~V~NLcsEr~Yd~s~f~gr~V~~~p~pD~~~P--~L~~L~~fc~~I~~wL~~d~~nVVVVHCkaGkGRTGtviaayL 274 (612)
..+.|++++....|...++.+ -.++|+...... ..... ............++..|+|+|..| .| +..++.+|
T Consensus 3 ~~~~ivDvR~~~e~~~~hi~g--a~~i~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~iv~~c~~g-~~-a~~~~~~l 76 (100)
T smart00450 3 EKVVLLDVRSPEEYEGGHIPG--AVNIPLSELLDRRGELDIL--EFEELLKRLGLDKDKPVVVYCRSG-NR-SAKAAWLL 76 (100)
T ss_pred CCEEEEECCCHHHhccCCCCC--ceeCCHHHhccCCCCcCHH--HHHHHHHHcCCCCCCeEEEEeCCC-cH-HHHHHHHH
Confidence 357889987666677666654 345555432211 11111 122222233345668999999543 34 34445555
Q ss_pred HHhc
Q 037030 275 LYLK 278 (612)
Q Consensus 275 i~~~ 278 (612)
...+
T Consensus 77 ~~~G 80 (100)
T smart00450 77 RELG 80 (100)
T ss_pred HHcC
Confidence 4444
No 64
>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily. Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.
Probab=70.69 E-value=10 Score=32.77 Aligned_cols=84 Identities=14% Similarity=0.261 Sum_probs=43.9
Q ss_pred HHHHHHHHhhCCCeeEEEEccCCccCCcCcccCceEEEeccCCCCC--CcHHHHHHHHHHHHHHHHhcCCCeEEEEcCCC
Q 037030 185 EEVIKFFETYHKDKYKVYNLCSERLYDASLFEGRCVASFPFDDHNC--PPIQLITSFCHSAYSWLKEDIENVVVVHCKAG 262 (612)
Q Consensus 185 ~dV~~fLe~~h~~~y~V~NLcsEr~Yd~s~f~gr~V~~~p~pD~~~--P~L~~L~~fc~~I~~wL~~d~~nVVVVHCkaG 262 (612)
+++...|... ...+.|+.++....|...++.+ -.++||.+... +.+..+. . ..|+....+.+|+|+|..|
T Consensus 4 ~~l~~~l~~~-~~~~~liDvR~~~e~~~ghIpg--A~~ip~~~~~~~~~~~~~~~----~-~~~~~~~~~~~vv~~c~~g 75 (105)
T cd01525 4 YDVIRLLDNS-PAKLAAVDIRSSPDFRRGHIEG--SINIPFSSVFLKEGELEQLP----T-VPRLENYKGKIIVIVSHSH 75 (105)
T ss_pred HHHHHHHhCC-CCCeEEEECCCHHHHhCCccCC--CEeCCHHHhccccccccccc----c-hHHHHhhcCCeEEEEeCCC
Confidence 4566666543 2368899997655676655554 35566643211 1111111 1 1233333357899999877
Q ss_pred CchhHHHHHHHHHHhc
Q 037030 263 MARTGLMISSLLLYLK 278 (612)
Q Consensus 263 kGRTGtviaayLi~~~ 278 (612)
. |++. ++..|...+
T Consensus 76 ~-~s~~-~a~~L~~~G 89 (105)
T cd01525 76 K-HAAL-FAAFLVKCG 89 (105)
T ss_pred c-cHHH-HHHHHHHcC
Confidence 5 5543 333444444
No 65
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=67.20 E-value=25 Score=30.40 Aligned_cols=78 Identities=15% Similarity=0.283 Sum_probs=41.3
Q ss_pred HHHHHHHHhhCCCeeEEEEccCCccCCcCcccCceEEEeccCCCCCCcHHHHHHHHHHHHHHHHhcCCCeEEEEcCCCCc
Q 037030 185 EEVIKFFETYHKDKYKVYNLCSERLYDASLFEGRCVASFPFDDHNCPPIQLITSFCHSAYSWLKEDIENVVVVHCKAGMA 264 (612)
Q Consensus 185 ~dV~~fLe~~h~~~y~V~NLcsEr~Yd~s~f~gr~V~~~p~pD~~~P~L~~L~~fc~~I~~wL~~d~~nVVVVHCkaGkG 264 (612)
+++...++..+ ....|+++++...|....+.| ..++|+ ..+..+...+..+ +.+..|+|+|..| .
T Consensus 5 ~~l~~~~~~~~-~~~~iiDvR~~~e~~~~hI~g--a~~ip~--------~~~~~~~~~~~~~---~~~~~vv~~c~~g-~ 69 (101)
T cd01528 5 AELAEWLADER-EEPVLIDVREPEELEIAFLPG--FLHLPM--------SEIPERSKELDSD---NPDKDIVVLCHHG-G 69 (101)
T ss_pred HHHHHHHhcCC-CCCEEEECCCHHHHhcCcCCC--CEecCH--------HHHHHHHHHhccc---CCCCeEEEEeCCC-c
Confidence 45556665532 235789987555565554444 234443 2333333332211 3467899999886 4
Q ss_pred hhHHHHHHHHHHhc
Q 037030 265 RTGLMISSLLLYLK 278 (612)
Q Consensus 265 RTGtviaayLi~~~ 278 (612)
|+ ..++.+|...+
T Consensus 70 rs-~~~~~~l~~~G 82 (101)
T cd01528 70 RS-MQVAQWLLRQG 82 (101)
T ss_pred hH-HHHHHHHHHcC
Confidence 65 44455555443
No 66
>cd01530 Cdc25 Cdc25 phosphatases are members of the Rhodanese Homology Domain superfamily. They activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. Cdc25A phosphatase functions to regulate S phase entry and Cdc25B is required for G2/M phase transition of the cell cycle. The Cdc25 domain binds oxyanions at the catalytic site and has the signature motif (H/YCxxxxxR).
Probab=65.84 E-value=23 Score=32.27 Aligned_cols=82 Identities=15% Similarity=0.224 Sum_probs=41.0
Q ss_pred HHHHHHHHhhC---CCeeEEEEccCCccCCcCcccCceEEEeccCCCCCCcHHHHHHHHHHHHHHHHhcCCCeEEEEcCC
Q 037030 185 EEVIKFFETYH---KDKYKVYNLCSERLYDASLFEGRCVASFPFDDHNCPPIQLITSFCHSAYSWLKEDIENVVVVHCKA 261 (612)
Q Consensus 185 ~dV~~fLe~~h---~~~y~V~NLcsEr~Yd~s~f~gr~V~~~p~pD~~~P~L~~L~~fc~~I~~wL~~d~~nVVVVHCka 261 (612)
+++...|+..- .+.+.|++++....|...++.+ ..++|+. +.+...+.....-+..+.+.+|+|||..
T Consensus 7 ~el~~~l~~~~~~~~~~~~liDvR~~~e~~~ghI~g--A~~ip~~-------~~l~~~~~~~~~~~~~~~~~~vv~yC~~ 77 (121)
T cd01530 7 ETLARLLQGKYDNFFDKYIIIDCRFPYEYNGGHIKG--AVNLSTK-------DELEEFFLDKPGVASKKKRRVLIFHCEF 77 (121)
T ss_pred HHHHHHHhcccccCCCCEEEEECCCHHHHhCCcCCC--CEeCCcH-------HHHHHHHHHhhcccccCCCCEEEEECCC
Confidence 45666665431 2357899997555666555544 3344432 1222211110000113456899999973
Q ss_pred CCchhHHHHHHHHHH
Q 037030 262 GMARTGLMISSLLLY 276 (612)
Q Consensus 262 GkGRTGtviaayLi~ 276 (612)
+-.|+ ..+|.+|..
T Consensus 78 sg~rs-~~aa~~L~~ 91 (121)
T cd01530 78 SSKRG-PRMARHLRN 91 (121)
T ss_pred ccccH-HHHHHHHHH
Confidence 33554 445555544
No 67
>cd01531 Acr2p Eukaryotic arsenate resistance proteins are members of the Rhodanese Homology Domain superfamily. Included in this CD is the Saccharomyces cerevisiae arsenate reductase protein, Acr2p, and other yeast and plant homologs.
Probab=63.51 E-value=59 Score=28.74 Aligned_cols=73 Identities=15% Similarity=0.238 Sum_probs=37.0
Q ss_pred HHHHHHHHHhhCCCeeEEEEccCCccCCcCcccCceEEEeccCCCCCCcHHHHHHHHHHHHHHHHhcCCCeEEEEcCCCC
Q 037030 184 MEEVIKFFETYHKDKYKVYNLCSERLYDASLFEGRCVASFPFDDHNCPPIQLITSFCHSAYSWLKEDIENVVVVHCKAGM 263 (612)
Q Consensus 184 i~dV~~fLe~~h~~~y~V~NLcsEr~Yd~s~f~gr~V~~~p~pD~~~P~L~~L~~fc~~I~~wL~~d~~nVVVVHCkaGk 263 (612)
..++...+.... +...|++++.. .|...++.+ ..++|+. .+......+..-+..+.+..|||||..+-
T Consensus 6 ~~~l~~~~~~~~-~~~~iiDvR~~-e~~~~hi~g--A~~ip~~--------~l~~~~~~~~~~~~~~~~~~iv~yC~~~~ 73 (113)
T cd01531 6 PAQLKGWIRNGR-PPFQVVDVRDE-DYAGGHIKG--SWHYPST--------RFKAQLNQLVQLLSGSKKDTVVFHCALSQ 73 (113)
T ss_pred HHHHHHHHHcCC-CCEEEEEcCCc-ccCCCcCCC--CEecCHH--------HHhhCHHHHHHHHhcCCCCeEEEEeecCC
Confidence 455666664431 34678999765 665555544 2344432 22222222211111134578999998444
Q ss_pred chhHH
Q 037030 264 ARTGL 268 (612)
Q Consensus 264 GRTGt 268 (612)
.|+..
T Consensus 74 ~r~~~ 78 (113)
T cd01531 74 VRGPS 78 (113)
T ss_pred cchHH
Confidence 55543
No 68
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=60.63 E-value=45 Score=30.41 Aligned_cols=37 Identities=14% Similarity=0.274 Sum_probs=23.4
Q ss_pred HHHHHHHHhhCCCeeEEEEccCCccCCcCcccCceEEEeccCC
Q 037030 185 EEVIKFFETYHKDKYKVYNLCSERLYDASLFEGRCVASFPFDD 227 (612)
Q Consensus 185 ~dV~~fLe~~h~~~y~V~NLcsEr~Yd~s~f~gr~V~~~p~pD 227 (612)
+++...++ +...|+.++....|...++.+ ..++||.+
T Consensus 4 ~el~~~l~----~~~~iiDvR~~~e~~~ghIpg--Ainip~~~ 40 (128)
T cd01520 4 EDLLALRK----ADGPLIDVRSPKEFFEGHLPG--AINLPLLD 40 (128)
T ss_pred HHHHHHHh----cCCEEEECCCHHHhccCcCCC--cEEccCCC
Confidence 34555554 235799998666777766665 45677753
No 69
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=60.56 E-value=71 Score=30.82 Aligned_cols=28 Identities=18% Similarity=0.059 Sum_probs=18.4
Q ss_pred cCCCeEEEEcCCCCchhHHHHHHHHHHhc
Q 037030 250 DIENVVVVHCKAGMARTGLMISSLLLYLK 278 (612)
Q Consensus 250 d~~nVVVVHCkaGkGRTGtviaayLi~~~ 278 (612)
+++..|||.|..|..|+.. ++..|...+
T Consensus 114 ~~d~~IVvYC~~G~~~S~~-aa~~L~~~G 141 (162)
T TIGR03865 114 DKDRPLVFYCLADCWMSWN-AAKRALAYG 141 (162)
T ss_pred CCCCEEEEEECCCCHHHHH-HHHHHHhcC
Confidence 4568999999987767654 333444444
No 70
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=60.42 E-value=38 Score=28.50 Aligned_cols=74 Identities=16% Similarity=0.224 Sum_probs=38.0
Q ss_pred HHHHHHHHhhCCCeeEEEEccCCccCCc--CcccCceEEEeccCCCCCCcHHHHHHHHHHHHHHHHhcCCCeEEEEcCCC
Q 037030 185 EEVIKFFETYHKDKYKVYNLCSERLYDA--SLFEGRCVASFPFDDHNCPPIQLITSFCHSAYSWLKEDIENVVVVHCKAG 262 (612)
Q Consensus 185 ~dV~~fLe~~h~~~y~V~NLcsEr~Yd~--s~f~gr~V~~~p~pD~~~P~L~~L~~fc~~I~~wL~~d~~nVVVVHCkaG 262 (612)
.++...+... ..+.|++++....|.. ..+.+ ...+|+ ..+..++ .++ ..+..|+|+|..|
T Consensus 5 ~~~~~~~~~~--~~~~ivDvR~~~e~~~~~~hi~g--a~~ip~--------~~~~~~~----~~~--~~~~~ivv~c~~g 66 (96)
T cd01444 5 DELAELLAAG--EAPVLLDVRDPASYAALPDHIPG--AIHLDE--------DSLDDWL----GDL--DRDRPVVVYCYHG 66 (96)
T ss_pred HHHHHHHhcC--CCcEEEECCCHHHHhcccCCCCC--CeeCCH--------HHHHHHH----hhc--CCCCCEEEEeCCC
Confidence 3444444331 3478999975445655 44443 233433 2222222 122 3457899999944
Q ss_pred CchhHHHHHHHHHHhc
Q 037030 263 MARTGLMISSLLLYLK 278 (612)
Q Consensus 263 kGRTGtviaayLi~~~ 278 (612)
..+..++.+|...+
T Consensus 67 --~~s~~a~~~l~~~G 80 (96)
T cd01444 67 --NSSAQLAQALREAG 80 (96)
T ss_pred --ChHHHHHHHHHHcC
Confidence 33444555555544
No 71
>PRK10287 thiosulfate:cyanide sulfurtransferase; Provisional
Probab=60.40 E-value=16 Score=32.84 Aligned_cols=67 Identities=15% Similarity=0.252 Sum_probs=34.5
Q ss_pred CCCeeEEEEccCCccCCcCcccCceEEEeccCCCCCCcHHHHHHHHHHHHHHHHhcCCCeEEEEcCCCCchhHHHHHHHH
Q 037030 195 HKDKYKVYNLCSERLYDASLFEGRCVASFPFDDHNCPPIQLITSFCHSAYSWLKEDIENVVVVHCKAGMARTGLMISSLL 274 (612)
Q Consensus 195 h~~~y~V~NLcsEr~Yd~s~f~gr~V~~~p~pD~~~P~L~~L~~fc~~I~~wL~~d~~nVVVVHCkaGkGRTGtviaayL 274 (612)
|.+.+ |++++++..|....+.+ ..++|+. .+... + .++..+.+..|+|+|..| .|+... +..|
T Consensus 18 ~~~~~-lIDvR~~~ef~~ghIpG--AiniP~~--------~l~~~---l-~~l~~~~~~~IVlyC~~G-~rS~~a-a~~L 80 (104)
T PRK10287 18 FAAEH-WIDVRVPEQYQQEHVQG--AINIPLK--------EVKER---I-ATAVPDKNDTVKLYCNAG-RQSGQA-KEIL 80 (104)
T ss_pred cCCCE-EEECCCHHHHhcCCCCc--cEECCHH--------HHHHH---H-HhcCCCCCCeEEEEeCCC-hHHHHH-HHHH
Confidence 55555 77877655666555444 2344432 22211 1 222224456899999876 454444 4444
Q ss_pred HHhc
Q 037030 275 LYLK 278 (612)
Q Consensus 275 i~~~ 278 (612)
...+
T Consensus 81 ~~~G 84 (104)
T PRK10287 81 SEMG 84 (104)
T ss_pred HHcC
Confidence 4433
No 72
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=59.11 E-value=37 Score=36.90 Aligned_cols=73 Identities=19% Similarity=0.316 Sum_probs=51.1
Q ss_pred CCCCCcHHHHHHHHHHHHHHHHhcC--------------CCeEEEEcC-CCCchhHHHHHHHHHHhcCCCCHHHHHHHHH
Q 037030 227 DHNCPPIQLITSFCHSAYSWLKEDI--------------ENVVVVHCK-AGMARTGLMISSLLLYLKFFPTAEESIDYYN 291 (612)
Q Consensus 227 D~~~P~L~~L~~fc~~I~~wL~~d~--------------~nVVVVHCk-aGkGRTGtviaayLi~~~~~~taeEALd~f~ 291 (612)
.|.+|..+.+...++...+||+... -..|+||-- .|-|||.-++.-+++-+-.+
T Consensus 328 ~hiPp~P~dv~~qmq~fv~WLNsE~~~tlhPve~AAlAHYKLV~iHPF~DGNGRTsRLLmNlilMraGy----------- 396 (472)
T KOG3824|consen 328 RHIPPSPEDVMEQMQDFVDWLNSESTLTLHPVERAALAHYKLVLIHPFTDGNGRTSRLLMNLILMRAGY----------- 396 (472)
T ss_pred CCCCCChHHHHHHHHHHHHHhccccccccChHHHHHHhhheeEEEeccccCCchHHHHHHHHHHHhcCC-----------
Confidence 3556678888888889999997532 135888876 79999987766554443333
Q ss_pred HhcCCCCCCccChhHHHHHHHHHHHH
Q 037030 292 QKRCVDGKGLVLPSQIRYVKYFERIL 317 (612)
Q Consensus 292 ~kR~~~~~gv~~PSQ~RYL~Yf~~lL 317 (612)
+.+++|.|.|--+|..--+
T Consensus 397 -------PPviipkeqRs~YYh~L~~ 415 (472)
T KOG3824|consen 397 -------PPVIIPKEQRSEYYHSLHV 415 (472)
T ss_pred -------CCeeecHHHhhhHHHHHhh
Confidence 6788999988766644333
No 73
>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.
Probab=57.35 E-value=17 Score=29.73 Aligned_cols=67 Identities=19% Similarity=0.325 Sum_probs=36.2
Q ss_pred CCeeEEEEccCCccCCcCcccCceEEEeccCCCCCCcHHHHHHHHHHHHHHHHhcCCCeEEEEcCCCCchhHHHHHHHHH
Q 037030 196 KDKYKVYNLCSERLYDASLFEGRCVASFPFDDHNCPPIQLITSFCHSAYSWLKEDIENVVVVHCKAGMARTGLMISSLLL 275 (612)
Q Consensus 196 ~~~y~V~NLcsEr~Yd~s~f~gr~V~~~p~pD~~~P~L~~L~~fc~~I~~wL~~d~~nVVVVHCkaGkGRTGtviaayLi 275 (612)
++.+.|++++.+..|...++.+ -..+||.+ ..... ......++..|+|+|..| ..+..++.+|.
T Consensus 8 ~~~~~iiD~R~~~~~~~~~i~g--a~~~~~~~-------~~~~~-----~~~~~~~~~~vv~~c~~~--~~a~~~~~~l~ 71 (89)
T cd00158 8 DEDAVLLDVREPEEYAAGHIPG--AINIPLSE-------LEERA-----ALLELDKDKPIVVYCRSG--NRSARAAKLLR 71 (89)
T ss_pred CCCeEEEECCCHHHHhccccCC--CEecchHH-------HhhHH-----HhhccCCCCeEEEEeCCC--chHHHHHHHHH
Confidence 4568999997655566555544 23344321 11111 111224568899999885 23455555555
Q ss_pred Hhc
Q 037030 276 YLK 278 (612)
Q Consensus 276 ~~~ 278 (612)
..+
T Consensus 72 ~~G 74 (89)
T cd00158 72 KAG 74 (89)
T ss_pred HhC
Confidence 443
No 74
>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.
Probab=55.21 E-value=31 Score=30.40 Aligned_cols=27 Identities=22% Similarity=0.349 Sum_probs=15.8
Q ss_pred cCCCeEEEEcCCCCchhHHHHHHHHHHhc
Q 037030 250 DIENVVVVHCKAGMARTGLMISSLLLYLK 278 (612)
Q Consensus 250 d~~nVVVVHCkaGkGRTGtviaayLi~~~ 278 (612)
+++..|+|+|..|. |+.. ++.+|...+
T Consensus 76 ~~~~~iv~yc~~g~-~s~~-~~~~l~~~G 102 (118)
T cd01449 76 TPDKPVIVYCGSGV-TACV-LLLALELLG 102 (118)
T ss_pred CCCCCEEEECCcHH-HHHH-HHHHHHHcC
Confidence 35678999998763 4433 334443333
No 75
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=54.97 E-value=77 Score=27.00 Aligned_cols=76 Identities=14% Similarity=0.156 Sum_probs=40.4
Q ss_pred HHHHHHHHhhCCCeeEEEEccCCccCCcCcccCceEEEeccCCCCCCcHHHHHHHHHHHHHHHHhcCCCeEEEEcCCCCc
Q 037030 185 EEVIKFFETYHKDKYKVYNLCSERLYDASLFEGRCVASFPFDDHNCPPIQLITSFCHSAYSWLKEDIENVVVVHCKAGMA 264 (612)
Q Consensus 185 ~dV~~fLe~~h~~~y~V~NLcsEr~Yd~s~f~gr~V~~~p~pD~~~P~L~~L~~fc~~I~~wL~~d~~nVVVVHCkaGkG 264 (612)
.++...+.... ..+.++++++...|...++.+- .++|+ ..+.. .+. ++....+..|+|+|..|.
T Consensus 4 ~~l~~~~~~~~-~~~~liDvR~~~e~~~ghipga--~~ip~--------~~l~~---~~~-~~~~~~~~~iv~~c~~G~- 67 (95)
T cd01534 4 AELARWAAEGD-RTVYRFDVRTPEEYEAGHLPGF--RHTPG--------GQLVQ---ETD-HFAPVRGARIVLADDDGV- 67 (95)
T ss_pred HHHHHHHHcCC-CCeEEEECCCHHHHHhCCCCCc--EeCCH--------HHHHH---HHH-HhcccCCCeEEEECCCCC-
Confidence 45666665432 3578899976566766555542 33442 22211 111 222223568999998764
Q ss_pred hhHHHHHHHHHHh
Q 037030 265 RTGLMISSLLLYL 277 (612)
Q Consensus 265 RTGtviaayLi~~ 277 (612)
|+ ..++.+|...
T Consensus 68 rs-~~aa~~L~~~ 79 (95)
T cd01534 68 RA-DMTASWLAQM 79 (95)
T ss_pred hH-HHHHHHHHHc
Confidence 44 3445555443
No 76
>PRK00162 glpE thiosulfate sulfurtransferase; Validated
Probab=54.50 E-value=51 Score=28.85 Aligned_cols=74 Identities=14% Similarity=0.158 Sum_probs=39.1
Q ss_pred HHHHHHHHHhhCCCeeEEEEccCCccCCcCcccCceEEEeccCCCCCCcHHHHHHHHHHHHHHHHhcCCCeEEEEcCCCC
Q 037030 184 MEEVIKFFETYHKDKYKVYNLCSERLYDASLFEGRCVASFPFDDHNCPPIQLITSFCHSAYSWLKEDIENVVVVHCKAGM 263 (612)
Q Consensus 184 i~dV~~fLe~~h~~~y~V~NLcsEr~Yd~s~f~gr~V~~~p~pD~~~P~L~~L~~fc~~I~~wL~~d~~nVVVVHCkaGk 263 (612)
.+++...++.. .+.|++++....|...++.+ ..++|+ ..+..++ .++ +.+..++|+|..|.
T Consensus 9 ~~el~~~l~~~---~~~ivDvR~~~e~~~ghi~g--A~~ip~--------~~l~~~~----~~~--~~~~~ivv~c~~g~ 69 (108)
T PRK00162 9 VEQAHQKLQEG---GAVLVDIRDPQSFAMGHAPG--AFHLTN--------DSLGAFM----RQA--DFDTPVMVMCYHGN 69 (108)
T ss_pred HHHHHHHHHcC---CCEEEEcCCHHHHhcCCCCC--CeECCH--------HHHHHHH----Hhc--CCCCCEEEEeCCCC
Confidence 45566666432 36789997555565544443 233332 2233222 222 34578999998775
Q ss_pred chhHHHHHHHHHHhc
Q 037030 264 ARTGLMISSLLLYLK 278 (612)
Q Consensus 264 GRTGtviaayLi~~~ 278 (612)
|+ ..++..|...+
T Consensus 70 -~s-~~a~~~L~~~G 82 (108)
T PRK00162 70 -SS-QGAAQYLLQQG 82 (108)
T ss_pred -CH-HHHHHHHHHCC
Confidence 33 44444554443
No 77
>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily. This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.
Probab=50.40 E-value=52 Score=29.03 Aligned_cols=80 Identities=20% Similarity=0.189 Sum_probs=41.7
Q ss_pred CHHHHHHHHHhhCCCeeEEEEccCCccCCcCcccCceEEEeccCCCCCCcHHHHHHHHHHHHHHHHhcCCCeEEEEcCCC
Q 037030 183 HMEEVIKFFETYHKDKYKVYNLCSERLYDASLFEGRCVASFPFDDHNCPPIQLITSFCHSAYSWLKEDIENVVVVHCKAG 262 (612)
Q Consensus 183 ~i~dV~~fLe~~h~~~y~V~NLcsEr~Yd~s~f~gr~V~~~p~pD~~~P~L~~L~~fc~~I~~wL~~d~~nVVVVHCkaG 262 (612)
..+++...|... .+.+.|++++....|...++.+- .++|+ ..+. .... + ..+++..|+|+|..|
T Consensus 11 s~~el~~~l~~~-~~~~~iiDvR~~~e~~~ghIpgA--~~ip~--------~~l~---~~~~-~-~i~~~~~vvvyc~~g 74 (110)
T cd01521 11 DCWDVAIALKNG-KPDFVLVDVRSAEAYARGHVPGA--INLPH--------REIC---ENAT-A-KLDKEKLFVVYCDGP 74 (110)
T ss_pred CHHHHHHHHHcC-CCCEEEEECCCHHHHhcCCCCCC--EeCCH--------HHhh---hHhh-h-cCCCCCeEEEEECCC
Confidence 345666666542 13578999975545655444432 33332 1111 0110 1 124568899999887
Q ss_pred CchhHHHHHHHHHHhc
Q 037030 263 MARTGLMISSLLLYLK 278 (612)
Q Consensus 263 kGRTGtviaayLi~~~ 278 (612)
....+..++..|...+
T Consensus 75 ~~~~s~~~a~~l~~~G 90 (110)
T cd01521 75 GCNGATKAALKLAELG 90 (110)
T ss_pred CCchHHHHHHHHHHcC
Confidence 6444444444454443
No 78
>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily. This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.
Probab=47.81 E-value=1.1e+02 Score=27.55 Aligned_cols=82 Identities=11% Similarity=0.195 Sum_probs=43.6
Q ss_pred CHHHHHHHHHhhCCCeeEEEEccCCccCCcCcccCceEEEeccCCCCCCcHHHHHHHHHHH-----HHHHHhcCCCeEEE
Q 037030 183 HMEEVIKFFETYHKDKYKVYNLCSERLYDASLFEGRCVASFPFDDHNCPPIQLITSFCHSA-----YSWLKEDIENVVVV 257 (612)
Q Consensus 183 ~i~dV~~fLe~~h~~~y~V~NLcsEr~Yd~s~f~gr~V~~~p~pD~~~P~L~~L~~fc~~I-----~~wL~~d~~nVVVV 257 (612)
..+++...++. ...+.|++++....|...++.|- ..+|+.. +......+ ..|. .+++..|+|
T Consensus 11 s~~el~~~~~~--~~~~~ivDvR~~~e~~~~hIpga--i~ip~~~--------~~~~~~~~~~~~~~~~~-~~~~~~ivv 77 (122)
T cd01526 11 SVKDYKNILQA--GKKHVLLDVRPKVHFEICRLPEA--INIPLSE--------LLSKAAELKSLQELPLD-NDKDSPIYV 77 (122)
T ss_pred CHHHHHHHHhC--CCCeEEEEcCCHHHhhcccCCCC--eEccHHH--------Hhhhhhhhhhhhhcccc-cCCCCcEEE
Confidence 34556555544 23578999987666766555542 3344322 11111111 1122 245678999
Q ss_pred EcCCCCchhHHHHHHHHHHhcC
Q 037030 258 HCKAGMARTGLMISSLLLYLKF 279 (612)
Q Consensus 258 HCkaGkGRTGtviaayLi~~~~ 279 (612)
+|..|. |+ ..+|.+|...+.
T Consensus 78 ~C~~G~-rs-~~aa~~L~~~G~ 97 (122)
T cd01526 78 VCRRGN-DS-QTAVRKLKELGL 97 (122)
T ss_pred ECCCCC-cH-HHHHHHHHHcCC
Confidence 998874 65 345555555443
No 79
>COG1054 Predicted sulfurtransferase [General function prediction only]
Probab=47.39 E-value=71 Score=34.39 Aligned_cols=106 Identities=18% Similarity=0.176 Sum_probs=64.8
Q ss_pred EecceeEeeCCCCCCCCCCCCcchhhhcCCHHHHHHHHHhhCCCeeEEEEccCCccCCcCcccCceEEEeccCCCCCCcH
Q 037030 154 ITENIIAMGFPAGDMSSGFFGYVEGFYRNHMEEVIKFFETYHKDKYKVYNLCSERLYDASLFEGRCVASFPFDDHNCPPI 233 (612)
Q Consensus 154 IT~RIIAm~~P~~~~ssg~~~~~E~~yRN~i~dV~~fLe~~h~~~y~V~NLcsEr~Yd~s~f~gr~V~~~p~pD~~~P~L 233 (612)
+-..|++|+.|.+-.... .-+.|-.+ .++-.+|... ...|++.+..-.|+...|.|- --|+.
T Consensus 92 ~kkEIV~lg~~ddv~p~~----~vG~yl~p-~~wn~~l~D~---~~vviDtRN~YE~~iG~F~gA----------v~p~~ 153 (308)
T COG1054 92 LKKEIVALGVEDDVDPLE----NVGTYLSP-KDWNELLSDP---DVVVIDTRNDYEVAIGHFEGA----------VEPDI 153 (308)
T ss_pred ehhhheecCCCCCcCccc----cccCccCH-HHHHHHhcCC---CeEEEEcCcceeEeeeeecCc----------cCCCh
Confidence 446899999986210000 11334333 3444444332 467777753334555556543 34667
Q ss_pred HHHHHHHHHHHHHHHhcCCCeEEEEcCCCCchhHHHHHHHHHHhcC
Q 037030 234 QLITSFCHSAYSWLKEDIENVVVVHCKAGMARTGLMISSLLLYLKF 279 (612)
Q Consensus 234 ~~L~~fc~~I~~wL~~d~~nVVVVHCkaGkGRTGtviaayLi~~~~ 279 (612)
+...+|...+.+++....+..|++.|.+|+- . =-..+||+..|+
T Consensus 154 ~tFrefP~~v~~~~~~~~~KkVvmyCTGGIR-C-EKas~~m~~~GF 197 (308)
T COG1054 154 ETFREFPAWVEENLDLLKDKKVVMYCTGGIR-C-EKASAWMKENGF 197 (308)
T ss_pred hhhhhhHHHHHHHHHhccCCcEEEEcCCcee-e-hhhHHHHHHhcc
Confidence 7777888888888777777899999999873 1 345667777665
No 80
>PRK07411 hypothetical protein; Validated
Probab=46.58 E-value=46 Score=36.74 Aligned_cols=81 Identities=16% Similarity=0.256 Sum_probs=45.0
Q ss_pred HHHHHHHHHhhCCCeeEEEEccCCccCCcCcccCceEEEeccCCCCCCcHHHHHHHHHHHHHHHHhcCCCeEEEEcCCCC
Q 037030 184 MEEVIKFFETYHKDKYKVYNLCSERLYDASLFEGRCVASFPFDDHNCPPIQLITSFCHSAYSWLKEDIENVVVVHCKAGM 263 (612)
Q Consensus 184 i~dV~~fLe~~h~~~y~V~NLcsEr~Yd~s~f~gr~V~~~p~pD~~~P~L~~L~~fc~~I~~wL~~d~~nVVVVHCkaGk 263 (612)
.+++...++.. .+.+.|++++....|...++.+ ..++||.+..... .+..+..+ ..+..|+|||..|.
T Consensus 286 ~~el~~~l~~~-~~~~vlIDVR~~~E~~~ghIpG--AiniP~~~l~~~~------~~~~l~~l---~~d~~IVvyC~~G~ 353 (390)
T PRK07411 286 VTELKALLDSG-ADDFVLIDVRNPNEYEIARIPG--SVLVPLPDIENGP------GVEKVKEL---LNGHRLIAHCKMGG 353 (390)
T ss_pred HHHHHHHHhCC-CCCeEEEECCCHHHhccCcCCC--CEEccHHHhhccc------chHHHhhc---CCCCeEEEECCCCH
Confidence 45666666532 1257799997655677666665 3456765432211 11222222 24578999998765
Q ss_pred chhHHHHHHHHHHhc
Q 037030 264 ARTGLMISSLLLYLK 278 (612)
Q Consensus 264 GRTGtviaayLi~~~ 278 (612)
|+. +++.+|...+
T Consensus 354 -RS~-~aa~~L~~~G 366 (390)
T PRK07411 354 -RSA-KALGILKEAG 366 (390)
T ss_pred -HHH-HHHHHHHHcC
Confidence 664 4455554444
No 81
>TIGR02981 phageshock_pspE phage shock operon rhodanese PspE. Members of this very narrowly defined protein family are proteins active as rhodanese (EC 2.8.1.1) and found in the extended variants of the phage shock protein (psp operon) in Escherichia coli and a few closely related species. Note that the designation phage shock protein PspE has been applied, incorrectly, in many instances where the genome lacks the phage shock regulon entirely.
Probab=44.97 E-value=68 Score=28.52 Aligned_cols=63 Identities=19% Similarity=0.355 Sum_probs=32.8
Q ss_pred EEEEccCCccCCcCcccCceEEEeccCCCCCCcHHHHHHHHHHHHHHHHhcCCCeEEEEcCCCCchhHHHHHHHHHHhc
Q 037030 200 KVYNLCSERLYDASLFEGRCVASFPFDDHNCPPIQLITSFCHSAYSWLKEDIENVVVVHCKAGMARTGLMISSLLLYLK 278 (612)
Q Consensus 200 ~V~NLcsEr~Yd~s~f~gr~V~~~p~pD~~~P~L~~L~~fc~~I~~wL~~d~~nVVVVHCkaGkGRTGtviaayLi~~~ 278 (612)
.++++++...|...++.| ..++|+ ..+.. ...++..+.+..|+|+|..|. |+... +.+|...+
T Consensus 20 ~lIDvR~~~ef~~ghIpg--Ainip~--------~~l~~----~l~~~~~~~~~~vvlyC~~G~-rS~~a-a~~L~~~G 82 (101)
T TIGR02981 20 HWIDVRIPEQYQQEHIQG--AINIPL--------KEIKE----HIATAVPDKNDTVKLYCNAGR-QSGMA-KDILLDMG 82 (101)
T ss_pred EEEECCCHHHHhcCCCCC--CEECCH--------HHHHH----HHHHhCCCCCCeEEEEeCCCH-HHHHH-HHHHHHcC
Confidence 478886555665544443 233443 22222 222333344578999998874 55443 44554444
No 82
>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.
Probab=41.87 E-value=1e+02 Score=26.16 Aligned_cols=28 Identities=18% Similarity=0.055 Sum_probs=18.4
Q ss_pred CCCeEEEEcCCCCchhHHHHHHHHHHhc
Q 037030 251 IENVVVVHCKAGMARTGLMISSLLLYLK 278 (612)
Q Consensus 251 ~~nVVVVHCkaGkGRTGtviaayLi~~~ 278 (612)
++.+|+|+|..|...++..++..|...+
T Consensus 49 ~~~~ivl~c~~G~~~~s~~aa~~L~~~G 76 (92)
T cd01532 49 RDTPIVVYGEGGGEDLAPRAARRLSELG 76 (92)
T ss_pred CCCeEEEEeCCCCchHHHHHHHHHHHcC
Confidence 3578999999876544555555555544
No 83
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=41.65 E-value=1.1e+02 Score=25.86 Aligned_cols=63 Identities=14% Similarity=0.344 Sum_probs=33.3
Q ss_pred CeeEEEEccCCccCCcCcccCceEEEeccCCCCCCcHHHHHHHHHHHHHHHHhcCCCeEEEEcCCCCchhHHHHHHHHHH
Q 037030 197 DKYKVYNLCSERLYDASLFEGRCVASFPFDDHNCPPIQLITSFCHSAYSWLKEDIENVVVVHCKAGMARTGLMISSLLLY 276 (612)
Q Consensus 197 ~~y~V~NLcsEr~Yd~s~f~gr~V~~~p~pD~~~P~L~~L~~fc~~I~~wL~~d~~nVVVVHCkaGkGRTGtviaayLi~ 276 (612)
+++.|+++++...|...++.+ ..++|+ ..+...+. .+ +++..||++|..|. .+.+++..|..
T Consensus 12 ~~~~iiD~R~~~~~~~~hipg--A~~ip~--------~~~~~~~~----~~--~~~~~vvl~c~~g~--~a~~~a~~L~~ 73 (90)
T cd01524 12 DGVTLIDVRTPQEFEKGHIKG--AINIPL--------DELRDRLN----EL--PKDKEIIVYCAVGL--RGYIAARILTQ 73 (90)
T ss_pred CCCEEEECCCHHHHhcCCCCC--CEeCCH--------HHHHHHHH----hc--CCCCcEEEEcCCCh--hHHHHHHHHHH
Confidence 356889997555676555544 233342 22222111 11 44578999998752 24444555544
Q ss_pred h
Q 037030 277 L 277 (612)
Q Consensus 277 ~ 277 (612)
.
T Consensus 74 ~ 74 (90)
T cd01524 74 N 74 (90)
T ss_pred C
Confidence 3
No 84
>KOG1089 consensus Myotubularin-related phosphatidylinositol 3-phosphate 3-phosphatase MTM6 [General function prediction only]
Probab=40.77 E-value=44 Score=38.85 Aligned_cols=21 Identities=38% Similarity=0.518 Sum_probs=17.5
Q ss_pred CCeEEEEcCCCCchhHHHHHH
Q 037030 252 ENVVVVHCKAGMARTGLMISS 272 (612)
Q Consensus 252 ~nVVVVHCkaGkGRTGtviaa 272 (612)
+-.|||||..|+-||..|++.
T Consensus 344 ~~sVlvhcsdGwDrT~qV~SL 364 (573)
T KOG1089|consen 344 GASVLVHCSDGWDRTCQVSSL 364 (573)
T ss_pred CCeEEEEccCCcchhHHHHHH
Confidence 367999999999999777654
No 85
>cd01445 TST_Repeats Thiosulfate sulfurtransferases (TST) contain 2 copies of the Rhodanese Homology Domain. Only the second repeat contains the catalytically active Cys residue. The role of the 1st repeat is uncertain, but believed to be involved in protein interaction. This CD aligns the 1st and 2nd repeats.
Probab=37.42 E-value=2e+02 Score=26.84 Aligned_cols=25 Identities=12% Similarity=-0.007 Sum_probs=14.9
Q ss_pred cCCCeEEEEcCC-CCchhHHHHHHHH
Q 037030 250 DIENVVVVHCKA-GMARTGLMISSLL 274 (612)
Q Consensus 250 d~~nVVVVHCka-GkGRTGtviaayL 274 (612)
+++..|||.|.. +.|..+..+.-.|
T Consensus 93 ~~~~~vVvY~~~~~~g~~A~r~~~~l 118 (138)
T cd01445 93 DLDKHLIATDGDDLGGFTACHIALAA 118 (138)
T ss_pred CCCCeEEEECCCCCcchHHHHHHHHH
Confidence 456789999974 3344444443333
No 86
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=37.16 E-value=77 Score=34.84 Aligned_cols=84 Identities=14% Similarity=0.051 Sum_probs=43.4
Q ss_pred cCCHHHHHHHHHhhCCCeeEEEEccCCccCCcCcccC-ceEEEeccCCCCCCcHHHHHHHHHHHHHHHHhcCCCeEEEEc
Q 037030 181 RNHMEEVIKFFETYHKDKYKVYNLCSERLYDASLFEG-RCVASFPFDDHNCPPIQLITSFCHSAYSWLKEDIENVVVVHC 259 (612)
Q Consensus 181 RN~i~dV~~fLe~~h~~~y~V~NLcsEr~Yd~s~f~g-r~V~~~p~pD~~~P~L~~L~~fc~~I~~wL~~d~~nVVVVHC 259 (612)
|-..+++.+.++.. ...|+++++...|...++.+ ....++| +..|......+..+. ..++.+|+|||
T Consensus 272 ~~~~~el~~~l~~~---~~~lIDVR~~~E~~~ghI~~~~gAinIP--------l~~l~~~~~~~~~l~-~~~~~~Ivv~C 339 (370)
T PRK05600 272 RTDTTSLIDATLNG---SATLLDVREPHEVLLKDLPEGGASLKLP--------LSAITDDADILHALS-PIDGDNVVVYC 339 (370)
T ss_pred ccCHHHHHHHHhcC---CeEEEECCCHHHhhhccCCCCCccEeCc--------HHHhhcchhhhhhcc-ccCCCcEEEEC
Confidence 33456666666542 35788997655676544432 0133333 333322111122222 22334899999
Q ss_pred CCCCchhHHHHHHHHHHhc
Q 037030 260 KAGMARTGLMISSLLLYLK 278 (612)
Q Consensus 260 kaGkGRTGtviaayLi~~~ 278 (612)
..| .|+. .++.+|...+
T Consensus 340 ~sG-~RS~-~Aa~~L~~~G 356 (370)
T PRK05600 340 ASG-IRSA-DFIEKYSHLG 356 (370)
T ss_pred CCC-hhHH-HHHHHHHHcC
Confidence 988 4554 4556665544
No 87
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=37.07 E-value=3.7e+02 Score=25.51 Aligned_cols=87 Identities=13% Similarity=0.150 Sum_probs=43.8
Q ss_pred CeeeEecceeEeeCCCCCCCCCCCCcchhhhcCCHHHHHHHHHhhCCCeeEEEEccC--CccCCcCc--------ccCce
Q 037030 150 DMTYITENIIAMGFPAGDMSSGFFGYVEGFYRNHMEEVIKFFETYHKDKYKVYNLCS--ERLYDASL--------FEGRC 219 (612)
Q Consensus 150 DltyIT~RIIAm~~P~~~~ssg~~~~~E~~yRN~i~dV~~fLe~~h~~~y~V~NLcs--Er~Yd~s~--------f~gr~ 219 (612)
++..|++++-+.+.|. ++|+...-.. +--.|+|.+. |..-.+.. --|..
T Consensus 2 ~i~~I~d~lsVsgQi~------------------~~D~~~iaa~---GFksiI~nRPDgEe~~QP~~~~i~~aa~~aGl~ 60 (130)
T COG3453 2 DIRRINDRLSVSGQIS------------------PADIASIAAL---GFKSIICNRPDGEEPGQPGFAAIAAAAEAAGLT 60 (130)
T ss_pred CceecccceeecCCCC------------------HHHHHHHHHh---ccceecccCCCCCCCCCCChHHHHHHHHhcCCc
Confidence 5677888888887763 2233332222 2235677642 11111110 01333
Q ss_pred EEEeccCCCCCCcHHHHHHHHHHHHHHHHhcCCCeEEEEcCCCC
Q 037030 220 VASFPFDDHNCPPIQLITSFCHSAYSWLKEDIENVVVVHCKAGM 263 (612)
Q Consensus 220 V~~~p~pD~~~P~L~~L~~fc~~I~~wL~~d~~nVVVVHCkaGk 263 (612)
+.+.|.-... ++-+.+..|.+.+.+ -+++|+.||+.|-
T Consensus 61 y~~iPV~~~~-iT~~dV~~f~~Al~e-----aegPVlayCrsGt 98 (130)
T COG3453 61 YTHIPVTGGG-ITEADVEAFQRALDE-----AEGPVLAYCRSGT 98 (130)
T ss_pred eEEeecCCCC-CCHHHHHHHHHHHHH-----hCCCEEeeecCCc
Confidence 4555543322 233444555554432 2589999998764
No 88
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=36.18 E-value=1.3e+02 Score=32.17 Aligned_cols=86 Identities=20% Similarity=0.301 Sum_probs=43.6
Q ss_pred HHHHHHHHHhhCCCeeEEEEccCCccCCcCc-------ccCc--eEEEeccC-----CCCCCcHHHHHHHHHHHHHHHHh
Q 037030 184 MEEVIKFFETYHKDKYKVYNLCSERLYDASL-------FEGR--CVASFPFD-----DHNCPPIQLITSFCHSAYSWLKE 249 (612)
Q Consensus 184 i~dV~~fLe~~h~~~y~V~NLcsEr~Yd~s~-------f~gr--~V~~~p~p-----D~~~P~L~~L~~fc~~I~~wL~~ 249 (612)
.++|...+.. +.+.|++.++...|.... ..|+ .-.++||. ++..++.+.|..++... ..
T Consensus 194 ~~~v~~~~~~---~~~~iiD~R~~~ef~G~~~~~~~~~~~GHIPgAvnip~~~~~~~~~~~~~~~el~~~~~~~----gi 266 (320)
T PLN02723 194 LEQVKKNIED---KTYQHIDARSKARFDGAAPEPRKGIRSGHIPGSKCVPFPQMLDSSQTLLPAEELKKRFEQE----GI 266 (320)
T ss_pred HHHHHHhhcC---CCeEEEECCCcccccCCCCCCCCCCcCCcCCCCcccCHHHhcCCCCCCCCHHHHHHHHHhc----CC
Confidence 4566555532 246788887544553211 1111 13456663 22344555555544322 12
Q ss_pred cCCCeEEEEcCCCCchhHHHHHHHHHHhc
Q 037030 250 DIENVVVVHCKAGMARTGLMISSLLLYLK 278 (612)
Q Consensus 250 d~~nVVVVHCkaGkGRTGtviaayLi~~~ 278 (612)
+++..|+++|..| +.+.++...|...+
T Consensus 267 ~~~~~iv~yC~sG--~~A~~~~~~L~~~G 293 (320)
T PLN02723 267 SLDSPIVASCGTG--VTACILALGLHRLG 293 (320)
T ss_pred CCCCCEEEECCcH--HHHHHHHHHHHHcC
Confidence 4567899999764 44555544444433
No 89
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=35.66 E-value=50 Score=34.43 Aligned_cols=28 Identities=11% Similarity=-0.034 Sum_probs=16.0
Q ss_pred cCCCeEEEEcCCCCchhHHHHHHHHHHhc
Q 037030 250 DIENVVVVHCKAGMARTGLMISSLLLYLK 278 (612)
Q Consensus 250 d~~nVVVVHCkaGkGRTGtviaayLi~~~ 278 (612)
+++..|||+|..| ++.+..+...|.+.+
T Consensus 85 ~~d~~VVvyc~~~-~~~a~~~~~~l~~~G 112 (281)
T PRK11493 85 NQDKHLVVYDEGN-LFSAPRAWWMLRTFG 112 (281)
T ss_pred CCCCEEEEECCCC-CchHHHHHHHHHHhc
Confidence 4567899999765 444443333333333
No 90
>KOG1096 consensus Adenosine monophosphate deaminase [Nucleotide transport and metabolism]
Probab=33.14 E-value=1.4e+02 Score=35.63 Aligned_cols=72 Identities=19% Similarity=0.372 Sum_probs=46.3
Q ss_pred cCCCCCCcHH----HHHHHHHHHHHHHHhcCCCeEEE--EcC-CCCchhHHHHHHHHHHhcCCCCHHHHHHHHHHhcCCC
Q 037030 225 FDDHNCPPIQ----LITSFCHSAYSWLKEDIENVVVV--HCK-AGMARTGLMISSLLLYLKFFPTAEESIDYYNQKRCVD 297 (612)
Q Consensus 225 ~pD~~~P~L~----~L~~fc~~I~~wL~~d~~nVVVV--HCk-aGkGRTGtviaayLi~~~~~~taeEALd~f~~kR~~~ 297 (612)
|....-|+.. -+..=+..+..|.++...|..++ ||. +|- +--++++||+.+++-
T Consensus 553 Wt~~~NPpysyYlYY~YaNl~~LN~lR~~rg~nTf~LRphCgeag~--~~hLvsafLla~gIs----------------- 613 (768)
T KOG1096|consen 553 WTAEDNPPYSYYLYYMYANLAKLNHLRRARGQNTFTLRPHCGEAGD--IEHLVSAFLLAHGIS----------------- 613 (768)
T ss_pred ccccCCCchhhhHHHHHHHHHHHHHHHHHcCCceEEecCCCCCcCC--HHHHHHHHHHhcccc-----------------
Confidence 4444444433 34444555677777777788887 996 344 667889999888752
Q ss_pred CCCcc--ChhHHHHHHHHHHH
Q 037030 298 GKGLV--LPSQIRYVKYFERI 316 (612)
Q Consensus 298 ~~gv~--~PSQ~RYL~Yf~~l 316 (612)
.|+. .+.-++||+|..+|
T Consensus 614 -hg~Llrk~PvLQYLyYL~QI 633 (768)
T KOG1096|consen 614 -HGILLRKVPVLQYLYYLAQI 633 (768)
T ss_pred -chhhhccchHHHHHHHHHhc
Confidence 2222 24457899998876
No 91
>cd01527 RHOD_YgaP Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases.
Probab=29.47 E-value=1.1e+02 Score=26.18 Aligned_cols=72 Identities=18% Similarity=0.292 Sum_probs=37.2
Q ss_pred HHHHHHHHhhCCCeeEEEEccCCccCCcCcccCceEEEeccCCCCCCcHHHHHHHHHHHHHHHHhcCCCeEEEEcCCCCc
Q 037030 185 EEVIKFFETYHKDKYKVYNLCSERLYDASLFEGRCVASFPFDDHNCPPIQLITSFCHSAYSWLKEDIENVVVVHCKAGMA 264 (612)
Q Consensus 185 ~dV~~fLe~~h~~~y~V~NLcsEr~Yd~s~f~gr~V~~~p~pD~~~P~L~~L~~fc~~I~~wL~~d~~nVVVVHCkaGkG 264 (612)
+++...++. + +.|++++.+..|...++.+ ..++|+.+.. . .. +..+.+.+|+|+|..|.
T Consensus 7 ~el~~~~~~---~-~~liDvR~~~e~~~~hi~g--a~~ip~~~~~--------~---~~---~~~~~~~~iv~~c~~g~- 65 (99)
T cd01527 7 NDACELLAQ---G-AVLVDIREPDEYLRERIPG--ARLVPLSQLE--------S---EG---LPLVGANAIIFHCRSGM- 65 (99)
T ss_pred HHHHHHHHC---C-CEEEECCCHHHHHhCcCCC--CEECChhHhc--------c---cc---cCCCCCCcEEEEeCCCc-
Confidence 445554443 2 6899997655565544443 3344433211 1 00 11344578999998763
Q ss_pred hhHHHHHHHHHHhc
Q 037030 265 RTGLMISSLLLYLK 278 (612)
Q Consensus 265 RTGtviaayLi~~~ 278 (612)
|+ ..++..|...+
T Consensus 66 ~s-~~~~~~L~~~g 78 (99)
T cd01527 66 RT-QQNAERLAAIS 78 (99)
T ss_pred hH-HHHHHHHHHcC
Confidence 33 34444454433
No 92
>COG0607 PspE Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=29.41 E-value=1.6e+02 Score=25.11 Aligned_cols=67 Identities=15% Similarity=0.253 Sum_probs=37.1
Q ss_pred eeEEEEccCCccCCcCcccCceEEEeccCCCCCCcHHHHHHHHHHHHHHHHhcCCCeEEEEcCCCCchhHHHHHHHHHHh
Q 037030 198 KYKVYNLCSERLYDASLFEGRCVASFPFDDHNCPPIQLITSFCHSAYSWLKEDIENVVVVHCKAGMARTGLMISSLLLYL 277 (612)
Q Consensus 198 ~y~V~NLcsEr~Yd~s~f~gr~V~~~p~pD~~~P~L~~L~~fc~~I~~wL~~d~~nVVVVHCkaGkGRTGtviaayLi~~ 277 (612)
...|+.++....|+.....+. ..++|..+. ........ .+.+..++|+|..|. |+ ..++.+|...
T Consensus 20 ~~~liDvR~~~e~~~~~i~~~-~~~ip~~~~--------~~~~~~~~----~~~~~~ivv~C~~G~-rS-~~aa~~L~~~ 84 (110)
T COG0607 20 DAVLLDVREPEEYERGHIPGA-AINIPLSEL--------KAAENLLE----LPDDDPIVVYCASGV-RS-AAAAAALKLA 84 (110)
T ss_pred CCEEEeccChhHhhhcCCCcc-eeeeecccc--------hhhhcccc----cCCCCeEEEEeCCCC-Ch-HHHHHHHHHc
Confidence 568888876556665454442 333333221 11111111 345689999999875 33 5666677666
Q ss_pred cC
Q 037030 278 KF 279 (612)
Q Consensus 278 ~~ 279 (612)
++
T Consensus 85 G~ 86 (110)
T COG0607 85 GF 86 (110)
T ss_pred CC
Confidence 64
No 93
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional
Probab=28.99 E-value=1.7e+02 Score=34.47 Aligned_cols=75 Identities=15% Similarity=0.168 Sum_probs=44.0
Q ss_pred HHHHHHHHHhhCCCeeEEEEccCCccCCcCcccCceEEEeccCC---------CCCCcHHHHHHHHHHHHHHHHhcCCCe
Q 037030 184 MEEVIKFFETYHKDKYKVYNLCSERLYDASLFEGRCVASFPFDD---------HNCPPIQLITSFCHSAYSWLKEDIENV 254 (612)
Q Consensus 184 i~dV~~fLe~~h~~~y~V~NLcsEr~Yd~s~f~gr~V~~~p~pD---------~~~P~L~~L~~fc~~I~~wL~~d~~nV 254 (612)
.+++.+.|+. +...|++++....|...+..|- .+++|.. +..|+.+.+...+..+ -.+++..
T Consensus 13 ~~eL~~~l~~---~~vvIIDvR~~~eY~~GHIPGA--v~i~~~~~~~~~~~~~~~lp~~~~l~~~l~~l----GI~~d~~ 83 (610)
T PRK09629 13 PNDLLERLDA---PELILVDLTSSARYEAGHIRGA--RFVDPKRTQLGKPPAPGLLPDTADLEQLFGEL----GHNPDAV 83 (610)
T ss_pred HHHHHHHhcC---CCEEEEECCChHHHHhCCCCCc--EEcChhHhhccCCCCCCCCCCHHHHHHHHHHc----CCCCCCE
Confidence 3566666643 2477899875556766555553 4555531 2234555555444433 2355688
Q ss_pred EEEEcCCCCchhH
Q 037030 255 VVVHCKAGMARTG 267 (612)
Q Consensus 255 VVVHCkaGkGRTG 267 (612)
|||.|..|..+++
T Consensus 84 VVvYd~~g~~~A~ 96 (610)
T PRK09629 84 YVVYDDEGGGWAG 96 (610)
T ss_pred EEEECCCCCchHH
Confidence 9999998755543
No 94
>cd01535 4RHOD_Repeat_4 Member of the Rhodanese Homology Domain superfamily, repeat 4. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 4th repeat which, in general, contains the putative catalytic Cys residue.
Probab=28.80 E-value=1.7e+02 Score=27.63 Aligned_cols=63 Identities=11% Similarity=0.050 Sum_probs=35.2
Q ss_pred eeEEEEccCCccCCcCcccCceEEEeccCCCCCCcHHHHHHHHHHHHHHHHhcCCCeEEEEcCCCCchhHHHHHHHHHHh
Q 037030 198 KYKVYNLCSERLYDASLFEGRCVASFPFDDHNCPPIQLITSFCHSAYSWLKEDIENVVVVHCKAGMARTGLMISSLLLYL 277 (612)
Q Consensus 198 ~y~V~NLcsEr~Yd~s~f~gr~V~~~p~pD~~~P~L~~L~~fc~~I~~wL~~d~~nVVVVHCkaGkGRTGtviaayLi~~ 277 (612)
...|++++.+..|...++.|- +++ +...|...+..+ .++..|||+|..| ..+..+|..|...
T Consensus 11 ~~~ivDvR~~~e~~~gHIpgA--i~~--------~~~~l~~~l~~l------~~~~~vVv~c~~g--~~a~~aa~~L~~~ 72 (145)
T cd01535 11 QTAVVDVTASANYVKRHIPGA--WWV--------LRAQLAQALEKL------PAAERYVLTCGSS--LLARFAAADLAAL 72 (145)
T ss_pred CeEEEECCCHHHHHcCCCCCc--eeC--------CHHHHHHHHHhc------CCCCCEEEEeCCC--hHHHHHHHHHHHc
Confidence 478999976556665454442 111 123333222221 3457899999874 4555666666554
Q ss_pred c
Q 037030 278 K 278 (612)
Q Consensus 278 ~ 278 (612)
+
T Consensus 73 G 73 (145)
T cd01535 73 T 73 (145)
T ss_pred C
Confidence 4
No 95
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional
Probab=27.92 E-value=2.3e+02 Score=33.42 Aligned_cols=75 Identities=15% Similarity=0.254 Sum_probs=39.8
Q ss_pred HHHHHHHHHhhCCCeeEEEEccCCccCCc--------CcccCceEEEeccCC-----CCCCcHHHHHHHHHHHHHHHHhc
Q 037030 184 MEEVIKFFETYHKDKYKVYNLCSERLYDA--------SLFEGRCVASFPFDD-----HNCPPIQLITSFCHSAYSWLKED 250 (612)
Q Consensus 184 i~dV~~fLe~~h~~~y~V~NLcsEr~Yd~--------s~f~gr~V~~~p~pD-----~~~P~L~~L~~fc~~I~~wL~~d 250 (612)
.++|...++ ...+.|++.++...|.. .+..| -..+||.+ +..++.+.|..++... -.+
T Consensus 151 ~e~v~~~l~---~~~~~iIDaR~~~ef~G~~~~~~r~GHIPG--Avnip~~~~~~~~~~lk~~~el~~~~~~~----Gi~ 221 (610)
T PRK09629 151 REYLQSRLG---AADLAIWDARAPTEYSGEKVVAAKGGHIPG--AVNFEWTAGMDKARNLRIRQDMPEILRDL----GIT 221 (610)
T ss_pred HHHHHHhhC---CCCcEEEECCCccccCCcccccccCCCCCC--CeecCHHHhcCCCCCCCCHHHHHHHHHHc----CCC
Confidence 455555443 23577889876545532 12222 35567742 2344444444443221 124
Q ss_pred CCCeEEEEcCCCCchhHH
Q 037030 251 IENVVVVHCKAGMARTGL 268 (612)
Q Consensus 251 ~~nVVVVHCkaGkGRTGt 268 (612)
++..|+++|..|. |++.
T Consensus 222 ~~~~VVvYC~sG~-rAa~ 238 (610)
T PRK09629 222 PDKEVITHCQTHH-RSGF 238 (610)
T ss_pred CCCCEEEECCCCh-HHHH
Confidence 5678999998874 5544
No 96
>PF08114 PMP1_2: ATPase proteolipid family; InterPro: IPR012589 This family consists of small proteolipids associated with the plasma membrane H+ ATPase. Two proteolipids (PMP1 and PMP2) are associated with the ATPase and both genes are similarly expressed in the wild-type strain of yeast. No modification of the level of transcription of one PMP gene is detected in a strain deleted of the other. Though both proteolipids show similarity with other small proteolipids associated with other cation -transporting ATPases, their functions remain unclear [].
Probab=26.62 E-value=20 Score=27.43 Aligned_cols=28 Identities=32% Similarity=0.651 Sum_probs=21.5
Q ss_pred cCCCeEEEEcCCCCchhHHHHHHHHHHhcC
Q 037030 250 DIENVVVVHCKAGMARTGLMISSLLLYLKF 279 (612)
Q Consensus 250 d~~nVVVVHCkaGkGRTGtviaayLi~~~~ 279 (612)
-|.+||+|.|--|. .|+.+.|.++|+++
T Consensus 6 lp~GVIlVF~lVgl--v~i~iva~~iYRKw 33 (43)
T PF08114_consen 6 LPGGVILVFCLVGL--VGIGIVALFIYRKW 33 (43)
T ss_pred CCCCeeeehHHHHH--HHHHHHHHHHHHHH
Confidence 47799999998655 46667778888776
No 97
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=23.80 E-value=4.9e+02 Score=26.04 Aligned_cols=66 Identities=15% Similarity=0.078 Sum_probs=36.4
Q ss_pred hhcCCHHHHHHHHHhhCCCeeEEEEccCCccCCcCcccCceEEEeccCCCCCCcHHHHHHHHHHHHHHH
Q 037030 179 FYRNHMEEVIKFFETYHKDKYKVYNLCSERLYDASLFEGRCVASFPFDDHNCPPIQLITSFCHSAYSWL 247 (612)
Q Consensus 179 ~yRN~i~dV~~fLe~~h~~~y~V~NLcsEr~Yd~s~f~gr~V~~~p~pD~~~P~L~~L~~fc~~I~~wL 247 (612)
-|...++++..+|.+++ -.|.||+......+......|..+.++|.+... +++.|..-+..+...|
T Consensus 18 GfET~ve~L~~~l~~~g-~~v~Vyc~~~~~~~~~~~y~gv~l~~i~~~~~g--~~~si~yd~~sl~~al 83 (185)
T PF09314_consen 18 GFETFVEELAPRLVSKG-IDVTVYCRSDYYPYKEFEYNGVRLVYIPAPKNG--SAESIIYDFLSLLHAL 83 (185)
T ss_pred cHHHHHHHHHHHHhcCC-ceEEEEEccCCCCCCCcccCCeEEEEeCCCCCC--chHHHHHHHHHHHHHH
Confidence 34455677777776542 268999885322334444556557777766443 3554444343443333
No 98
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=21.55 E-value=1.7e+02 Score=31.59 Aligned_cols=35 Identities=20% Similarity=0.245 Sum_probs=19.2
Q ss_pred HHHHHHhcCCC-eEEEEcCCCCchhHHHHHHHHHHhc
Q 037030 243 AYSWLKEDIEN-VVVVHCKAGMARTGLMISSLLLYLK 278 (612)
Q Consensus 243 I~~wL~~d~~n-VVVVHCkaGkGRTGtviaayLi~~~ 278 (612)
+.+|+.....+ .|+|+|..|-.|++.+ +.+|...+
T Consensus 64 i~~~~~~~~~~~~vvvyC~~gG~RS~~a-a~~L~~~G 99 (311)
T TIGR03167 64 VEQWRAFADGPPQPLLYCWRGGMRSGSL-AWLLAQIG 99 (311)
T ss_pred HHHHHhhcCCCCcEEEEECCCChHHHHH-HHHHHHcC
Confidence 44554432222 3889996555677654 44554444
No 99
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=20.46 E-value=1.8e+02 Score=31.17 Aligned_cols=17 Identities=18% Similarity=0.495 Sum_probs=14.6
Q ss_pred eEEEEcCCCCchhHHHH
Q 037030 254 VVVVHCKAGMARTGLMI 270 (612)
Q Consensus 254 VVVVHCkaGkGRTGtvi 270 (612)
.|.|=|.+|+.||-.|+
T Consensus 244 tIaiGCTGG~HRSV~ia 260 (284)
T PF03668_consen 244 TIAIGCTGGQHRSVAIA 260 (284)
T ss_pred EEEEEcCCCcCcHHHHH
Confidence 68999999999996654
Done!