BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037032
(473 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1BCR|A Chain A, Complex Of The Wheat Serine Carboxypeptidase, Cpdw-Ii,
With The Microbial Peptide Aldehyde Inhibitor, Antipain,
And Arginine At Room Temperature
pdb|1BCS|A Chain A, Complex Of The Wheat Serine Carboxypeptidase, Cpdw-Ii,
With The Microbial Peptide Aldehyde Inhibitor,
Chymostatin, And Arginine At 100 Degrees Kelvin
Length = 263
Score = 197 bits (501), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 116/270 (42%), Positives = 155/270 (57%), Gaps = 16/270 (5%)
Query: 17 CAELISALPGQPNNVPVKQYSGYILTDANHGRALFYYFVEA-QSTNPLSLPLTLWLNGGP 75
A+ I+ LPGQP V YSGYI D GR+LFY EA + P PL LWLNGGP
Sbjct: 7 AADRIARLPGQPA-VDFDMYSGYITVDEGAGRSLFYLLQEAPEDAQPA--PLVLWLNGGP 63
Query: 76 GCSSLGFGAFMEHGPFQPGENGQ-LLKNEYSWNLASNMLYVESPIGVGFSYSNTSSDYNL 134
GCSS+ +GA E G F+ G L+ NEY WN +N+L+++SP GVGFSY+NTSSD
Sbjct: 64 GCSSVAYGASEELGAFRVKPRGAGLVLNEYRWNKVANVLFLDSPAGVGFSYTNTSSDIYT 123
Query: 135 WNDSNTAGDNLRFIVNWLEEFPQYKDSEFFLTGESYAGHYVPQLATLILQYNKQPNVKPI 194
D+ TA D+ F+ W E FP YK +F++ GESYAGHYVP+L+ L+ + +K P I
Sbjct: 124 SGDNRTAHDSYAFLAKWFERFPHYKYRDFYIAGESYAGHYVPELSQLVHR-SKNP---VI 179
Query: 195 KLKSIALGNPLL-DLDISVLTGDFMWSHGAISDETLMLEKTVCNGSTYLRELVNNQESKG 253
LK +GN L+ D V T +F W+HG +SD+T K C +++ S
Sbjct: 180 NLKGFMVGNGLIDDYHDYVGTFEFWWNHGIVSDDTYRRLKEACLHDSFI------HPSPA 233
Query: 254 CNDVFNRVNEEFGDIDSGDLLLPSCLTSTS 283
C+ + E G+ID L P C ++S
Sbjct: 234 CDAATDVATAEQGNIDMYSLYTPVCNITSS 263
>pdb|1WHS|A Chain A, Structure Of The Complex Of L-Benzylsuccinate With Wheat
Serine Carboxypeptidase Ii At 2.0 Angstroms Resolution
Length = 255
Score = 196 bits (499), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 115/265 (43%), Positives = 152/265 (57%), Gaps = 16/265 (6%)
Query: 17 CAELISALPGQPNNVPVKQYSGYILTDANHGRALFYYFVEA-QSTNPLSLPLTLWLNGGP 75
A+ I+ LPGQP V YSGYI D GR+LFY EA + P PL LWLNGGP
Sbjct: 2 AADRIARLPGQPA-VDFDMYSGYITVDEGAGRSLFYLLQEAPEDAQPA--PLVLWLNGGP 58
Query: 76 GCSSLGFGAFMEHGPFQPGENGQ-LLKNEYSWNLASNMLYVESPIGVGFSYSNTSSDYNL 134
GCSS+ +GA E G F+ G L+ NEY WN +N+L+++SP GVGFSY+NTSSD
Sbjct: 59 GCSSVAYGASEELGAFRVKPRGAGLVLNEYRWNKVANVLFLDSPAGVGFSYTNTSSDIYT 118
Query: 135 WNDSNTAGDNLRFIVNWLEEFPQYKDSEFFLTGESYAGHYVPQLATLILQYNKQPNVKPI 194
D+ TA D+ F+ W E FP YK +F++ GESYAGHYVP+L+ L+ + +K P I
Sbjct: 119 SGDNRTAHDSYAFLAKWFERFPHYKYRDFYIAGESYAGHYVPELSQLVHR-SKNP---VI 174
Query: 195 KLKSIALGNPLL-DLDISVLTGDFMWSHGAISDETLMLEKTVCNGSTYLRELVNNQESKG 253
LK +GN L+ D V T +F W+HG +SD+T K C +++ S
Sbjct: 175 NLKGFMVGNGLIDDYHDYVGTFEFWWNHGIVSDDTYRRLKEACLHDSFI------HPSPA 228
Query: 254 CNDVFNRVNEEFGDIDSGDLLLPSC 278
C+ + E G+ID L P C
Sbjct: 229 CDAATDVATAEQGNIDMYSLYTPVC 253
>pdb|1WHT|A Chain A, Structure Of The Complex Of L-Benzylsuccinate With Wheat
Serine Carboxypeptidase Ii At 2.0 Angstroms Resolution
Length = 256
Score = 196 bits (499), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 115/265 (43%), Positives = 152/265 (57%), Gaps = 16/265 (6%)
Query: 17 CAELISALPGQPNNVPVKQYSGYILTDANHGRALFYYFVEA-QSTNPLSLPLTLWLNGGP 75
A+ I+ LPGQP V YSGYI D GR+LFY EA + P PL LWLNGGP
Sbjct: 3 AADRIARLPGQPA-VDFDMYSGYITVDEGAGRSLFYLLQEAPEDAQPA--PLVLWLNGGP 59
Query: 76 GCSSLGFGAFMEHGPFQPGENGQ-LLKNEYSWNLASNMLYVESPIGVGFSYSNTSSDYNL 134
GCSS+ +GA E G F+ G L+ NEY WN +N+L+++SP GVGFSY+NTSSD
Sbjct: 60 GCSSVAYGASEELGAFRVKPRGAGLVLNEYRWNKVANVLFLDSPAGVGFSYTNTSSDIYT 119
Query: 135 WNDSNTAGDNLRFIVNWLEEFPQYKDSEFFLTGESYAGHYVPQLATLILQYNKQPNVKPI 194
D+ TA D+ F+ W E FP YK +F++ GESYAGHYVP+L+ L+ + +K P I
Sbjct: 120 SGDNRTAHDSYAFLAKWFERFPHYKYRDFYIAGESYAGHYVPELSQLVHR-SKNP---VI 175
Query: 195 KLKSIALGNPLL-DLDISVLTGDFMWSHGAISDETLMLEKTVCNGSTYLRELVNNQESKG 253
LK +GN L+ D V T +F W+HG +SD+T K C +++ S
Sbjct: 176 NLKGFMVGNGLIDDYHDYVGTFEFWWNHGIVSDDTYRRLKEACLHDSFI------HPSPA 229
Query: 254 CNDVFNRVNEEFGDIDSGDLLLPSC 278
C+ + E G+ID L P C
Sbjct: 230 CDAATDVATAEQGNIDMYSLYTPVC 254
>pdb|1GXS|A Chain A, Crystal Structure Of Hydroxynitrile Lyase From Sorghum
Bicolor In Complex With Inhibitor Benzoic Acid: A Novel
Cyanogenic Enzyme
pdb|1GXS|C Chain C, Crystal Structure Of Hydroxynitrile Lyase From Sorghum
Bicolor In Complex With Inhibitor Benzoic Acid: A Novel
Cyanogenic Enzyme
Length = 270
Score = 196 bits (498), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 116/275 (42%), Positives = 162/275 (58%), Gaps = 15/275 (5%)
Query: 19 ELISALPGQPNNVPVKQYSGYILTDANHGRALFYYFVEAQSTNPLSLPLTLWLNGGPGCS 78
+ I LPGQPN V Y GY+ D N+GRAL+Y+F EA + +P + PL LWLNGGPGCS
Sbjct: 8 DRILGLPGQPNGVAFGMYGGYVTIDDNNGRALYYWFQEADTADPAAAPLVLWLNGGPGCS 67
Query: 79 SLGFGAFMEHGPFQPGENGQ-LLKNEYSWNLASNMLYVESPIGVGFSYSNTSSDYNLWND 137
S+G GA E G F+ NG+ LL NEY+WN A+N+L+ ESP GVGFSYSNTSSD ++ D
Sbjct: 68 SIGLGAMQELGAFRVHTNGESLLLNEYAWNKAANILFAESPAGVGFSYSNTSSDLSM-GD 126
Query: 138 SNTAGDNLRFIVNWLEEFPQYKDSEFFLTGESYAGHYVPQLATLILQYNKQPNVKPIKLK 197
A D F+V W E FP Y EF++ GES GH++PQL+ ++ Y + N I +
Sbjct: 127 DKMAQDTYTFLVKWFERFPHYNYREFYIAGES--GHFIPQLSQVV--YRNRNNSPFINFQ 182
Query: 198 SIALGNPLLDLDISVLTGDF--MWSHGAISDETLMLEKTVCNGSTYLRELVNNQESKGCN 255
+ + + L + D + G F W HG ISDET VC G++++ + C
Sbjct: 183 GLLVSSGLTN-DHEDMIGMFESWWHHGLISDETRDSGLKVCPGTSFM------HPTPECT 235
Query: 256 DVFNRVNEEFGDIDSGDLLLPSCLTSTSAQQFKLF 290
+V+N+ E G+I+ + P+C S Q + +
Sbjct: 236 EVWNKALAEQGNINPYTIYTPTCDREPSPYQRRFW 270
>pdb|3SC2|A Chain A, Refined Atomic Model Of Wheat Serine Carboxypeptidase Ii
At 2.2- Angstroms Resolution
Length = 259
Score = 195 bits (496), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 115/265 (43%), Positives = 152/265 (57%), Gaps = 16/265 (6%)
Query: 17 CAELISALPGQPNNVPVKQYSGYILTDANHGRALFYYFVEA-QSTNPLSLPLTLWLNGGP 75
A+ I+ LPGQP V YSGYI D GR+LFY EA + P PL LWLNGGP
Sbjct: 7 AADRIARLPGQPA-VDFDMYSGYITVDEGAGRSLFYLLQEAPEDAQPA--PLVLWLNGGP 63
Query: 76 GCSSLGFGAFMEHGPFQPGENGQ-LLKNEYSWNLASNMLYVESPIGVGFSYSNTSSDYNL 134
GCSS+ +GA E G F+ G L+ NEY WN +N+L+++SP GVGFSY+NTSSD
Sbjct: 64 GCSSVAYGASEELGAFRVKPAGAGLVLNEYRWNKVANVLFLDSPAGVGFSYTNTSSDIYT 123
Query: 135 WNDSNTAGDNLRFIVNWLEEFPQYKDSEFFLTGESYAGHYVPQLATLILQYNKQPNVKPI 194
D+ TA D+ F+ W E FP YK +F++ GESYAGHYVP+L+ L+ + +K P I
Sbjct: 124 SGDNRTAHDSYAFLAKWFERFPHYKYRDFYIAGESYAGHYVPELSQLVHR-SKNP---VI 179
Query: 195 KLKSIALGNPLL-DLDISVLTGDFMWSHGAISDETLMLEKTVCNGSTYLRELVNNQESKG 253
LK +GN L+ D V T +F W+HG +SD+T K C +++ S
Sbjct: 180 NLKGFMVGNGLIDDYHDYVGTFEFWWNHGIVSDDTYRRLKEACLHDSFI------HPSPA 233
Query: 254 CNDVFNRVNEEFGDIDSGDLLLPSC 278
C+ + E G+ID L P C
Sbjct: 234 CDAATDVATAEQGNIDMYSLYTPVC 258
>pdb|1IVY|A Chain A, Physiological Dimer Hpp Precursor
pdb|1IVY|B Chain B, Physiological Dimer Hpp Precursor
Length = 452
Score = 174 bits (440), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 144/478 (30%), Positives = 224/478 (46%), Gaps = 65/478 (13%)
Query: 21 ISALPGQPNNVPVKQYSGYILTDANHGRALFYYFVEAQSTNPLSLPLTLWLNGGPGCSSL 80
I LPG +QYSGY+ + + + L Y+FVE+Q +P + P+ LWLNGGPGCSSL
Sbjct: 7 IQRLPGLAKQPSFRQYSGYLKSSGS--KHLHYWFVESQK-DPENSPVVLWLNGGPGCSSL 63
Query: 81 GFGAFMEHGPFQPGENGQLLK-NEYSWNLASNMLYVESPIGVGFSYSNTSSDYNLWNDSN 139
G EHGPF +G L+ N YSWNL +N+LY+ESP GVGFSYS+ + ND+
Sbjct: 64 D-GLLTEHGPFLVQPDGVTLEYNPYSWNLIANVLYLESPAGVGFSYSD--DKFYATNDTE 120
Query: 140 TAGDNLRFIVNWLEEFPQYKDSEFFLTGESYAGHYVPQLATLILQYNKQPNVKPIKLKSI 199
A N + ++ FP+YK+++ FLTGESYAG Y+P LA L++Q P+ + L+ +
Sbjct: 121 VAQSNFEALQDFFRLFPEYKNNKLFLTGESYAGIYIPTLAVLVMQ---DPS---MNLQGL 174
Query: 200 ALGNPLLDLD-----------ISVLTGDFMWS----HGAISDETLMLEKTVCNGSTYLRE 244
A+GN L + L G+ +WS H ++ + T L+E
Sbjct: 175 AVGNGLSSYEQNDNSLVYFAYYHGLLGNRLWSSLQTHCCSQNKCNFYDNKDLECVTNLQE 234
Query: 245 LVNNQESKGCNDVFNRVNEEFGDI--------------DSGDLLLPSCLTSTSAQQFKLF 290
+ + G N ++N G + D G++ L Q
Sbjct: 235 VARIVGNSGLN-IYNLYAPCAGGVPSHFRYEKDTVVVQDLGNIFTRLPLKRMWHQALLRS 293
Query: 291 GKHGKIPNMMVNFGASGDPCIGDRIFTYLNSPQVQEALHANTTHLPFPWEFCGGPLDYQY 350
G ++ N A+ TYLN+P V++AL+ LP W+ C ++ QY
Sbjct: 294 GDKVRMDPPCTNTTAAS---------TYLNNPYVRKALNI-PEQLP-QWDMCNFLVNLQY 342
Query: 351 KDFELNIIPQIADLI-MEGVPILLFSGDQDTKIPLTQTRIIAKNLANDLKLFPTTNYANW 409
+ ++ Q L+ + ILL++GD D +L +++ +
Sbjct: 343 RRLYRSMNSQYLKLLSSQKYQILLYNGDVDMACNFMGDEWFVDSLNQKMEVQRRPWLVKY 402
Query: 410 YDK-QQVGGWSQSFGAFRDGKNITYLTYATVRGAAHEVPYTTPSPALTLFQSFLTGSP 466
D +Q+ G+ + F +++ + T++GA H VP P A T+F FL P
Sbjct: 403 GDSGEQIAGFVKEF---------SHIAFLTIKGAGHMVPTDKPLAAFTMFSRFLNKQP 451
>pdb|4AZ0|A Chain A, Crystal Structure Of Cathepsin A, Complexed With 8a.
pdb|4AZ3|A Chain A, Crystal Structure Of Cathepsin A, Complexed With 15a
Length = 300
Score = 143 bits (361), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 92/220 (41%), Positives = 130/220 (59%), Gaps = 18/220 (8%)
Query: 21 ISALPGQPNNVPVKQYSGYILTDANHGRALFYYFVEAQSTNPLSLPLTLWLNGGPGCSSL 80
I LPG +QYSGY+ + + L Y+FVE+Q +P + P+ LWLNGGPGCSSL
Sbjct: 9 IQRLPGLAKQPSFRQYSGYL--KGSGSKHLHYWFVESQK-DPENSPVVLWLNGGPGCSSL 65
Query: 81 GFGAFMEHGPFQPGENGQLLK-NEYSWNLASNMLYVESPIGVGFSYSNTSSDYNLWNDSN 139
G EHGPF +G L+ N YSWNL +N+LY+ESP GVGFSYS+ + ND+
Sbjct: 66 D-GLLTEHGPFLVQPDGVTLEYNPYSWNLIANVLYLESPAGVGFSYSD--DKFYATNDTE 122
Query: 140 TAGDNLRFIVNWLEEFPQYKDSEFFLTGESYAGHYVPQLATLILQYNKQPNVKPIKLKSI 199
A N + ++ FP+YK+++ FLTGESYAG Y+P LA L++Q P+ + L+ +
Sbjct: 123 VAQSNFEALQDFFRLFPEYKNNKLFLTGESYAGIYIPTLAVLVMQ---DPS---MNLQGL 176
Query: 200 ALGNPLLDL---DISVLTGDFMWSHGAISDETLMLEKTVC 236
A+GN L D S++ F + HG + + +T C
Sbjct: 177 AVGNGLSSYEQNDNSLVY--FAYYHGLLGNRLWSSLQTHC 214
>pdb|1WPX|A Chain A, Crystal Structure Of Carboxypeptidase Y Inhibitor
Complexed With The Cognate Proteinase
pdb|1YSC|A Chain A, 2.8 Angstroms Structure Of Yeast Serine Carboxypeptidase
Length = 421
Score = 132 bits (331), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 125/446 (28%), Positives = 198/446 (44%), Gaps = 56/446 (12%)
Query: 33 VKQYSGYILTDANHGRALFYYFVEAQSTNPLSLPLTLWLNGGPGCSSLGFGAFMEHGPFQ 92
V QY+GY+ D F+++ +P P+ LWLNGGPGCSSL G F E GP
Sbjct: 14 VTQYTGYL--DVEDEDKHFFFWTFESRNDPAKDPVILWLNGGPGCSSLT-GLFFELGPSS 70
Query: 93 PGENGQLLKNEYSWNLASNMLYVESPIGVGFSYSNTSSDYNLWNDSNTAGDNLRFIVNWL 152
G + + + N YSWN + +++++ P+ VGFSYS +S + N D F+ +
Sbjct: 71 IGPDLKPIGNPYSWNSNATVIFLDQPVNVGFSYSGSSG---VSNTVAAGKDVYNFLELFF 127
Query: 153 EEFPQY--KDSEFFLTGESYAGHYVPQLATLILQYNKQPNVKPIKLKSIALGNPLLDLDI 210
++FP+Y K +F + GESYAGHY+P A+ IL + + L S+ +GN L D
Sbjct: 128 DQFPEYVNKGQDFHIAGESYAGHYIPVFASEILSHKD----RNFNLTSVLIGNGLTD--- 180
Query: 211 SVLTGDFMWSHGAISDETLMLEKTVCNGSTYLRELVNNQESKGCNDVFNR---VNEEFGD 267
LT + E C G ++ ++E D R + E D
Sbjct: 181 -PLT------------QYNYYEPMAC-GEGGEPSVLPSEECSAMEDSLERCLGLIESCYD 226
Query: 268 IDSGDLLLPSCLTSTSAQ--QFKLFGKHGKIPNMMVNFGASGDPCIGDRIFTYLNSPQVQ 325
S +P+ + +AQ ++ G++ G P + D I YLN V+
Sbjct: 227 SQSVWSCVPATIYCNNAQLAPYQRTGRNVYDIRKDCEGGNLCYPTLQD-IDDYLNQDYVK 285
Query: 326 EALHANTTHLPFPWEFCGGPLDYQY---KDFELNIIPQIADLIMEGVPILLFSGDQDTKI 382
EA+ A H +E C ++ + D+ + DL+ + +PIL+++GD+D
Sbjct: 286 EAVGAEVDH----YESCNFDINRNFLFAGDWMKPYHTAVTDLLNQDLPILVYAGDKD--- 338
Query: 383 PLTQTRIIAKNLAND--LKLFPTTNYANWYDKQQVGGWSQSFGAFRDG--KNITYLTYAT 438
I L N + P Y + Q+V W+ S G K+ + TY
Sbjct: 339 ------FICNWLGNKAWTDVLP-WKYDEEFASQKVRNWTASITDEVAGEVKSYKHFTYLR 391
Query: 439 VRGAAHEVPYTTPSPALTLFQSFLTG 464
V H VP+ P AL++ ++ G
Sbjct: 392 VFNGGHMVPFDVPENALSMVNEWIHG 417
>pdb|1CPY|A Chain A, Site-Directed Mutagenesis On (Serine) Carboxypeptidase Y
From Yeast. The Significance Of Thr 60 And Met 398 In
Hydrolysis And Aminolysis Reactions
Length = 421
Score = 127 bits (320), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 123/446 (27%), Positives = 196/446 (43%), Gaps = 56/446 (12%)
Query: 33 VKQYSGYILTDANHGRALFYYFVEAQSTNPLSLPLTLWLNGGPGCSSLGFGAFMEHGPFQ 92
V QY+GY+ D F+++ +P P+ LWLNGGPGCSSL G F GP
Sbjct: 14 VTQYTGYL--DVEDEDKHFFFWTFESRNDPAKDPVILWLNGGPGCSSLT-GLFFALGPSS 70
Query: 93 PGENGQLLKNEYSWNLASNMLYVESPIGVGFSYSNTSSDYNLWNDSNTAGDNLRFIVNWL 152
G + + + N YSWN + +++++ P+ VGFSYS +S + N D F+ +
Sbjct: 71 IGPDLKPIGNPYSWNSNATVIFLDQPVNVGFSYSGSSG---VSNTVAAGKDVYNFLELFF 127
Query: 153 EEFPQY--KDSEFFLTGESYAGHYVPQLATLILQYNKQPNVKPIKLKSIALGNPLLDLDI 210
++FP+Y K +F + G SYAGHY+P A+ IL + + L S+ +GN L D
Sbjct: 128 DQFPEYVNKGQDFHIAGASYAGHYIPVFASEILSHKD----RNFNLTSVLIGNGLTD--- 180
Query: 211 SVLTGDFMWSHGAISDETLMLEKTVCNGSTYLRELVNNQESKGCNDVFNR---VNEEFGD 267
LT + E C G ++ ++E D R + E D
Sbjct: 181 -PLT------------QYNYYEPMAC-GEGGEPSVLPSEECSAMEDSLERCLGLIESCYD 226
Query: 268 IDSGDLLLPSCLTSTSAQ--QFKLFGKHGKIPNMMVNFGASGDPCIGDRIFTYLNSPQVQ 325
S +P+ + +AQ ++ G++ G P + D I YLN V+
Sbjct: 227 SQSVWSCVPATIYCNNAQLAPYQRTGRNVYDIRKDCEGGNLCYPTLQD-IDDYLNQDYVK 285
Query: 326 EALHANTTHLPFPWEFCGGPLDYQY---KDFELNIIPQIADLIMEGVPILLFSGDQDTKI 382
EA+ A H +E C ++ + D+ + DL+ + +PIL+++GD+D
Sbjct: 286 EAVGAEVDH----YESCNFDINRNFLFAGDWMKPYHTAVTDLLNQDLPILVYAGDKD--- 338
Query: 383 PLTQTRIIAKNLAND--LKLFPTTNYANWYDKQQVGGWSQSFGAFRDG--KNITYLTYAT 438
I L N + P Y + Q+V W+ S G K+ + TY
Sbjct: 339 ------FICNWLGNKAWTDVLP-WKYDEEFASQKVRNWTASITDEVAGEVKSYKHFTYLR 391
Query: 439 VRGAAHEVPYTTPSPALTLFQSFLTG 464
V H VP+ P AL++ ++ G
Sbjct: 392 VFNGGHMVPFDVPENALSMVNEWIHG 417
>pdb|1AC5|A Chain A, Crystal Structure Of Kex1(delta)p, A Prohormone-processing
Carboxypeptidase From Saccharomyces Cerevisiae
Length = 483
Score = 117 bits (292), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 118/466 (25%), Positives = 205/466 (43%), Gaps = 68/466 (14%)
Query: 21 ISALPGQPNNVPVKQYSGYI--------LTDANHGRALFYYFVEAQSTNPLSLPLTLWLN 72
+S +P P+N+P + ++G+I D++ F+ F S + PL +WLN
Sbjct: 17 LSEVP-DPSNIP-QMHAGHIPLRSEDADEQDSSDLEYFFWKFTNNDSNGNVDRPLIIWLN 74
Query: 73 GGPGCSSLGFGAFMEHGPFQPGENGQLLKNEYSWNLASNMLYVESPIGVGFSYSNTSSDY 132
GGPGCSS+ GA +E GPF+ +G+L NE SW ++L+++ P G GFS +
Sbjct: 75 GGPGCSSMD-GALVESGPFRVNSDGKLYLNEGSWISKGDLLFIDQPTGTGFSVEQNKDEG 133
Query: 133 NLWNDSNTAGDNLR--------FIVNWLEEFPQYKDSEFFLTGESYAGHYVPQLATLILQ 184
+ D N ++L F+ N+ + FP+ + L+GESYAG Y+P A IL
Sbjct: 134 KI--DKNKFDEDLEDVTKHFMDFLENYFKIFPEDLTRKIILSGESYAGQYIPFFANAILN 191
Query: 185 YNKQPNV--KPIKLKSIALGNPLLDLDISVLTGDFMWSHGAISDETLMLEKTVCNGSTYL 242
+NK + LK++ +GN +D + L+ + DE+ K + N
Sbjct: 192 HNKFSKIDGDTYDLKALLIGNGWIDPNTQSLSYLPFAMEKKLIDESNPNFKHLTNAHENC 251
Query: 243 RELVNNQES--------KGCNDVFN------RVNEEFGDIDSGDLLLPSCLTSTSAQQFK 288
+ L+N+ + + C ++ N R + + G D CL +
Sbjct: 252 QNLINSASTDEAAHFSYQECENILNLLLSYTRESSQKGTAD--------CLNMYN----- 298
Query: 289 LFGKHGKIPNMMVNFGASGDPCIGDRIFTYLNSPQVQEALHANTTHLPFPWEFC----GG 344
F P+ +N+ P + + ++P V ++LH ++ + W+ C G
Sbjct: 299 -FNLKDSYPSCGMNW-----PKDISFVSKFFSTPGVIDSLHLDSDKIDH-WKECTNSVGT 351
Query: 345 PLDYQYKDFELNIIPQIADLIMEGVPILLFSGDQDTKIPLTQTRIIAKNLA-NDLKLFPT 403
L ++++P L+ G+ I+LF+GD+D NL +K F
Sbjct: 352 KLSNPISKPSIHLLPG---LLESGIEIVLFNGDKDLICNNKGVLDTIDNLKWGGIKGFSD 408
Query: 404 TNYA-NWYDKQQVGGWSQSFGAFRDGKNITYLTYATVRGAAHEVPY 448
+ +W K + S+ F + K LT+ +V A+H VP+
Sbjct: 409 DAVSFDWIHKSKSTDDSEEFSGYV--KYDRNLTFVSVYNASHMVPF 452
>pdb|1BCR|B Chain B, Complex Of The Wheat Serine Carboxypeptidase, Cpdw-Ii,
With The Microbial Peptide Aldehyde Inhibitor, Antipain,
And Arginine At Room Temperature
pdb|1BCS|B Chain B, Complex Of The Wheat Serine Carboxypeptidase, Cpdw-Ii,
With The Microbial Peptide Aldehyde Inhibitor,
Chymostatin, And Arginine At 100 Degrees Kelvin
Length = 160
Score = 115 bits (289), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 68/168 (40%), Positives = 87/168 (51%), Gaps = 14/168 (8%)
Query: 306 SGDPCIGDRIFTYLNSPQVQEALHANTT-HLPFPWEFCGGPLDYQYKDFELNIIPQIADL 364
S DPC Y N VQ ALHAN T + + W C ++ + D +++P +L
Sbjct: 3 SYDPCTERYSTAYYNRRDVQMALHANVTGAMNYTWATCSDTINTHWHDAPRSMLPIYREL 62
Query: 365 IMEGVPILLFSGDQDTKIPLTQTRIIAKNLANDLKLFPTTNYANWYDKQQVGGWSQSFGA 424
I G+ I +FSGD D +PLT TR L L TT++ WYD Q+VGGWSQ +
Sbjct: 63 IAAGLRIWVFSGDTDAVVPLTATRYSIGALG----LPTTTSWYPWYDDQEVGGWSQVYKG 118
Query: 425 FRDGKNITYLTYATVRGAAHEVPYTTPSPALTLFQSFLTGSPLPNRPK 472
LT +VRGA HEVP P AL LFQ FL G P+P + K
Sbjct: 119 ---------LTLVSVRGAGHEVPLHRPRQALVLFQYFLQGKPMPGQTK 157
>pdb|1WHT|B Chain B, Structure Of The Complex Of L-Benzylsuccinate With Wheat
Serine Carboxypeptidase Ii At 2.0 Angstroms Resolution
Length = 153
Score = 114 bits (285), Expect = 1e-25, Method: Composition-based stats.
Identities = 67/166 (40%), Positives = 86/166 (51%), Gaps = 14/166 (8%)
Query: 306 SGDPCIGDRIFTYLNSPQVQEALHANTT-HLPFPWEFCGGPLDYQYKDFELNIIPQIADL 364
S DPC Y N VQ ALHAN T + + W C ++ + D +++P +L
Sbjct: 1 SYDPCTERYSTAYYNRRDVQMALHANVTGAMNYTWATCSDTINTHWHDAPRSMLPIYREL 60
Query: 365 IMEGVPILLFSGDQDTKIPLTQTRIIAKNLANDLKLFPTTNYANWYDKQQVGGWSQSFGA 424
I G+ I +FSGD D +PLT TR L L TT++ WYD Q+VGGWSQ +
Sbjct: 61 IAAGLRIWVFSGDTDAVVPLTATRYSIGALG----LPTTTSWYPWYDDQEVGGWSQVYKG 116
Query: 425 FRDGKNITYLTYATVRGAAHEVPYTTPSPALTLFQSFLTGSPLPNR 470
LT +VRGA HEVP P AL LFQ FL G P+P +
Sbjct: 117 ---------LTLVSVRGAGHEVPLHRPRQALVLFQYFLQGKPMPGQ 153
>pdb|3SC2|B Chain B, Refined Atomic Model Of Wheat Serine Carboxypeptidase Ii
At 2.2- Angstroms Resolution
Length = 152
Score = 114 bits (284), Expect = 1e-25, Method: Composition-based stats.
Identities = 67/164 (40%), Positives = 85/164 (51%), Gaps = 14/164 (8%)
Query: 306 SGDPCIGDRIFTYLNSPQVQEALHANTT-HLPFPWEFCGGPLDYQYKDFELNIIPQIADL 364
S DPC Y N VQ ALHAN T + + W C ++ + D +++P +L
Sbjct: 1 SYDPCTERYSTAYYNRRDVQMALHANVTGAMNYTWATCSDTINTHWHDAPRSMLPIYREL 60
Query: 365 IMEGVPILLFSGDQDTKIPLTQTRIIAKNLANDLKLFPTTNYANWYDKQQVGGWSQSFGA 424
I G+ I +FSGD D +PLT TR L L TT++ WYD Q+VGGWSQ +
Sbjct: 61 IAAGLRIWVFSGDTDAVVPLTATRYSIGALG----LPTTTSWYPWYDDQEVGGWSQVYKG 116
Query: 425 FRDGKNITYLTYATVRGAAHEVPYTTPSPALTLFQSFLTGSPLP 468
LT +VRGA HEVP P AL LFQ FL G P+P
Sbjct: 117 ---------LTLVSVRGAGHEVPLHRPRQALVLFQYFLQGKPMP 151
>pdb|1WHS|B Chain B, Structure Of The Complex Of L-Benzylsuccinate With Wheat
Serine Carboxypeptidase Ii At 2.0 Angstroms Resolution
Length = 153
Score = 114 bits (284), Expect = 1e-25, Method: Composition-based stats.
Identities = 67/164 (40%), Positives = 85/164 (51%), Gaps = 14/164 (8%)
Query: 306 SGDPCIGDRIFTYLNSPQVQEALHANTT-HLPFPWEFCGGPLDYQYKDFELNIIPQIADL 364
S DPC Y N VQ ALHAN T + + W C ++ + D +++P +L
Sbjct: 1 SYDPCTERYSTAYYNRRDVQMALHANVTGAMNYTWATCSDTINTHWHDAPRSMLPIYREL 60
Query: 365 IMEGVPILLFSGDQDTKIPLTQTRIIAKNLANDLKLFPTTNYANWYDKQQVGGWSQSFGA 424
I G+ I +FSGD D +PLT TR L L TT++ WYD Q+VGGWSQ +
Sbjct: 61 IAAGLRIWVFSGDTDAVVPLTATRYSIGALG----LPTTTSWYPWYDDQEVGGWSQVYKG 116
Query: 425 FRDGKNITYLTYATVRGAAHEVPYTTPSPALTLFQSFLTGSPLP 468
LT +VRGA HEVP P AL LFQ FL G P+P
Sbjct: 117 ---------LTLVSVRGAGHEVPLHRPRQALVLFQYFLQGKPMP 151
>pdb|1GXS|B Chain B, Crystal Structure Of Hydroxynitrile Lyase From Sorghum
Bicolor In Complex With Inhibitor Benzoic Acid: A Novel
Cyanogenic Enzyme
pdb|1GXS|D Chain D, Crystal Structure Of Hydroxynitrile Lyase From Sorghum
Bicolor In Complex With Inhibitor Benzoic Acid: A Novel
Cyanogenic Enzyme
Length = 158
Score = 102 bits (255), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 61/165 (36%), Positives = 91/165 (55%), Gaps = 17/165 (10%)
Query: 308 DPCIGDRIFTYLNSPQVQEALHANTTHL-PFPWEFCGGPLDYQYKDFELNIIPQIADLIM 366
DPC YLN P+VQ ALHAN + + +PW C + Q+ +++P +LI
Sbjct: 5 DPCAVFNSINYLNLPEVQTALHANVSGIVEYPWTVCSNTIFDQWGQAADDLLPVYRELIQ 64
Query: 367 EGVPILLFSGDQDTKIPLTQTRIIAKNLANDLKLFPTTNYANWY---DKQQVGGWSQSFG 423
G+ + ++SGD D+ +P++ TR ++LA L+L T++ WY +++VGGWS +
Sbjct: 65 AGLRVWVYSGDTDSVVPVSSTR---RSLAA-LELPVKTSWYPWYMAPTEREVGGWSVQYE 120
Query: 424 AFRDGKNITYLTYATVRGAAHEVPYTTPSPALTLFQSFLTGSPLP 468
LTY TVRGA H VP P+ A LF+ FL G P+P
Sbjct: 121 G---------LTYVTVRGAGHLVPVHRPAQAFLLFKQFLKGEPMP 156
>pdb|4AZ0|B Chain B, Crystal Structure Of Cathepsin A, Complexed With 8a.
pdb|4AZ3|B Chain B, Crystal Structure Of Cathepsin A, Complexed With 15a
Length = 155
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 70/152 (46%), Gaps = 13/152 (8%)
Query: 317 TYLNSPQVQEALHANTTHLPFPWEFCGGPLDYQYKDFELNIIPQIADLIM-EGVPILLFS 375
TYLN+P V++AL+ LP W+ C ++ QY+ ++ Q L+ + ILL++
Sbjct: 13 TYLNNPYVRKALNI-PEQLP-QWDMCNFLVNLQYRRLYRSMNSQYLKLLSSQKYQILLYN 70
Query: 376 GDQDTKIPLTQTRIIAKNLANDLKLFPTTNYANWYDK-QQVGGWSQSFGAFRDGKNITYL 434
GD D +L +++ + D +Q+ G+ + F +++
Sbjct: 71 GDVDMACNFMGDEWFVDSLNQKMEVQRRPWLVKYGDSGEQIAGFVKEF---------SHI 121
Query: 435 TYATVRGAAHEVPYTTPSPALTLFQSFLTGSP 466
+ T++GA H VP P A T+F FL P
Sbjct: 122 AFLTIKGAGHMVPTDKPLAAFTMFSRFLNKQP 153
>pdb|1XTT|A Chain A, Sulfolobus Solfataricus Uracil Phosphoribosyltransferase
In Complex With Uridine 5'-Monophosphate (Ump)
pdb|1XTT|B Chain B, Sulfolobus Solfataricus Uracil Phosphoribosyltransferase
In Complex With Uridine 5'-Monophosphate (Ump)
pdb|1XTT|C Chain C, Sulfolobus Solfataricus Uracil Phosphoribosyltransferase
In Complex With Uridine 5'-Monophosphate (Ump)
pdb|1XTT|D Chain D, Sulfolobus Solfataricus Uracil Phosphoribosyltransferase
In Complex With Uridine 5'-Monophosphate (Ump)
pdb|1XTU|A Chain A, Sulfolobus Solfataricus Uracil Phosphoribosyltransferase
In Complex With Uridine 5'-Monophosphate (Ump) And
Cytidine 5'-Triphosphate (Ctp)
pdb|1XTU|B Chain B, Sulfolobus Solfataricus Uracil Phosphoribosyltransferase
In Complex With Uridine 5'-Monophosphate (Ump) And
Cytidine 5'-Triphosphate (Ctp)
pdb|1XTU|C Chain C, Sulfolobus Solfataricus Uracil Phosphoribosyltransferase
In Complex With Uridine 5'-Monophosphate (Ump) And
Cytidine 5'-Triphosphate (Ctp)
pdb|1XTU|D Chain D, Sulfolobus Solfataricus Uracil Phosphoribosyltransferase
In Complex With Uridine 5'-Monophosphate (Ump) And
Cytidine 5'-Triphosphate (Ctp)
pdb|1XTU|E Chain E, Sulfolobus Solfataricus Uracil Phosphoribosyltransferase
In Complex With Uridine 5'-Monophosphate (Ump) And
Cytidine 5'-Triphosphate (Ctp)
pdb|1XTU|F Chain F, Sulfolobus Solfataricus Uracil Phosphoribosyltransferase
In Complex With Uridine 5'-Monophosphate (Ump) And
Cytidine 5'-Triphosphate (Ctp)
pdb|1XTU|G Chain G, Sulfolobus Solfataricus Uracil Phosphoribosyltransferase
In Complex With Uridine 5'-Monophosphate (Ump) And
Cytidine 5'-Triphosphate (Ctp)
pdb|1XTU|H Chain H, Sulfolobus Solfataricus Uracil Phosphoribosyltransferase
In Complex With Uridine 5'-Monophosphate (Ump) And
Cytidine 5'-Triphosphate (Ctp)
pdb|1XTV|A Chain A, Sulfolobus Solfataricus Uracil Phosphoribosyltransferase
With Uridine 5'-Monophosphate (Ump) Bound To Half Of The
Subunits
pdb|1XTV|B Chain B, Sulfolobus Solfataricus Uracil Phosphoribosyltransferase
With Uridine 5'-Monophosphate (Ump) Bound To Half Of The
Subunits
pdb|1XTV|C Chain C, Sulfolobus Solfataricus Uracil Phosphoribosyltransferase
With Uridine 5'-Monophosphate (Ump) Bound To Half Of The
Subunits
pdb|1XTV|D Chain D, Sulfolobus Solfataricus Uracil Phosphoribosyltransferase
With Uridine 5'-Monophosphate (Ump) Bound To Half Of The
Subunits
pdb|1XTV|E Chain E, Sulfolobus Solfataricus Uracil Phosphoribosyltransferase
With Uridine 5'-Monophosphate (Ump) Bound To Half Of The
Subunits
pdb|1XTV|F Chain F, Sulfolobus Solfataricus Uracil Phosphoribosyltransferase
With Uridine 5'-Monophosphate (Ump) Bound To Half Of The
Subunits
pdb|1XTV|G Chain G, Sulfolobus Solfataricus Uracil Phosphoribosyltransferase
With Uridine 5'-Monophosphate (Ump) Bound To Half Of The
Subunits
pdb|1XTV|H Chain H, Sulfolobus Solfataricus Uracil Phosphoribosyltransferase
With Uridine 5'-Monophosphate (Ump) Bound To Half Of The
Subunits
pdb|1VST|A Chain A, Symmetric Sulfolobus Solfataricus Uracil
Phosphoribosyltransferase With Bound Prpp And Gtp
pdb|3G6W|A Chain A, Asymetric Gtp Bound Structure Of Uprtase From Sulfolobus
Solfataricus Containing Prpp-Mg2+ In Half Of The Active
Sites And R5p And Ppi In The Other Half
pdb|3G6W|B Chain B, Asymetric Gtp Bound Structure Of Uprtase From Sulfolobus
Solfataricus Containing Prpp-Mg2+ In Half Of The Active
Sites And R5p And Ppi In The Other Half
pdb|3G6W|C Chain C, Asymetric Gtp Bound Structure Of Uprtase From Sulfolobus
Solfataricus Containing Prpp-Mg2+ In Half Of The Active
Sites And R5p And Ppi In The Other Half
pdb|3G6W|D Chain D, Asymetric Gtp Bound Structure Of Uprtase From Sulfolobus
Solfataricus Containing Prpp-Mg2+ In Half Of The Active
Sites And R5p And Ppi In The Other Half
Length = 216
Score = 32.7 bits (73), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 24/110 (21%), Positives = 51/110 (46%), Gaps = 2/110 (1%)
Query: 97 GQLLKNEYSWNLASNMLYVESPIGVGFSYSNTSSDYNLWNDSNTAGDNLRFIVNWLEEFP 156
G++L E S L ++ VE+P+GV + +D N N + + L+ FP
Sbjct: 36 GRILGYEISNTLDYEIVEVETPLGVKTKGVDI-TDLNNIVIINILRAAVPLVEGLLKAFP 94
Query: 157 QYKDSEFFLTGESYAGHYVPQLATLILQYNKQPNVKPIKLKSIALGNPLL 206
+ + + G VP+ + + Y K P+++ K+ ++ + +P++
Sbjct: 95 KARQGVIGASRVEVDGKEVPKDMDVYIYYKKIPDIRA-KVDNVIIADPMI 143
>pdb|3DI0|A Chain A, Crystal Structure Of Dihydrodipicolinate Synthase From
Staphylococcus Aureus
pdb|3DI0|B Chain B, Crystal Structure Of Dihydrodipicolinate Synthase From
Staphylococcus Aureus
pdb|3DI1|A Chain A, Crystal Structure Of The Staphylococcus Aureus
Dihydrodipicolinate Synthase-pyruvate Complex
pdb|3DI1|B Chain B, Crystal Structure Of The Staphylococcus Aureus
Dihydrodipicolinate Synthase-pyruvate Complex
Length = 295
Score = 31.6 bits (70), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 5/85 (5%)
Query: 352 DFELNIIPQIADLIMEGVPILLFSGDQDTKIPLTQTRIIAKNLANDLKLFPTTNYANWYD 411
D + I+ + DL+ + VP++ +G DT+ + Q I AK L D + T +Y+
Sbjct: 56 DEKERILKTVIDLVDKRVPVIAGTGTNDTEKSI-QASIQAKALGADAIMLITP----YYN 110
Query: 412 KQQVGGWSQSFGAFRDGKNITYLTY 436
K G + F A D + + Y
Sbjct: 111 KTNQRGLVKHFEAIADAVKLPVVLY 135
>pdb|3DAQ|A Chain A, Crystal Structure Of Dihydrodipicolinate Synthase From
Methicillin- Resistant Staphylococcus Aureus
pdb|3DAQ|B Chain B, Crystal Structure Of Dihydrodipicolinate Synthase From
Methicillin- Resistant Staphylococcus Aureus
pdb|3DAQ|C Chain C, Crystal Structure Of Dihydrodipicolinate Synthase From
Methicillin- Resistant Staphylococcus Aureus
pdb|3DAQ|D Chain D, Crystal Structure Of Dihydrodipicolinate Synthase From
Methicillin- Resistant Staphylococcus Aureus
Length = 292
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 5/80 (6%)
Query: 357 IIPQIADLIMEGVPILLFSGDQDTKIPLTQTRIIAKNLANDLKLFPTTNYANWYDKQQVG 416
I+ + DL+ + VP++ +G DT+ + Q I AK L D + T +Y+K
Sbjct: 60 ILKTVIDLVDKRVPVIAGTGTNDTEKSI-QASIQAKALGADAIMLITP----YYNKTNQR 114
Query: 417 GWSQSFGAFRDGKNITYLTY 436
G + F A D + + Y
Sbjct: 115 GLVKHFEAIADAVKLPVVLY 134
>pdb|2BS2|A Chain A, Quinol:fumarate Reductase From Wolinella Succinogenes
pdb|2BS2|D Chain D, Quinol:fumarate Reductase From Wolinella Succinogenes
Length = 660
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 9/62 (14%)
Query: 212 VLTGDFMWSHGA---ISDETLMLEKTVCNGSTYLRELVNNQESKGCNDVF---NRVNEEF 265
++ G++ H A + ET LEK V Y++ LV ESKG DVF NR+ +
Sbjct: 418 MIVGEYFAEHCANTQVDLETKTLEKFVKGQEAYMKSLV---ESKGTEDVFKIKNRMKDVM 474
Query: 266 GD 267
D
Sbjct: 475 DD 476
>pdb|1QLB|A Chain A, Respiratory Complex Ii-Like Fumarate Reductase From
Wolinella Succinogenes
pdb|1QLB|D Chain D, Respiratory Complex Ii-Like Fumarate Reductase From
Wolinella Succinogenes
Length = 656
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 9/62 (14%)
Query: 212 VLTGDFMWSHGA---ISDETLMLEKTVCNGSTYLRELVNNQESKGCNDVF---NRVNEEF 265
++ G++ H A + ET LEK V Y++ LV ESKG DVF NR+ +
Sbjct: 418 MIVGEYFAEHCANTQVDLETKTLEKFVKGQEAYMKSLV---ESKGTEDVFKIKNRMKDVM 474
Query: 266 GD 267
D
Sbjct: 475 DD 476
>pdb|1E7P|A Chain A, Quinol:fumarate Reductase From Wolinella Succinogenes
pdb|1E7P|D Chain D, Quinol:fumarate Reductase From Wolinella Succinogenes
pdb|2BS3|A Chain A, Glu C180-> Gln Variant Quinol:fumarate Reductase From
Wolinella Succinogenes
pdb|2BS3|D Chain D, Glu C180-> Gln Variant Quinol:fumarate Reductase From
Wolinella Succinogenes
pdb|2BS4|A Chain A, Glu C180-> Ile Variant Quinol:fumarate Reductase From
Wolinella Succinogenes
pdb|2BS4|D Chain D, Glu C180-> Ile Variant Quinol:fumarate Reductase From
Wolinella Succinogenes
pdb|1E7P|G Chain G, Quinol:fumarate Reductase From Wolinella Succinogenes
pdb|1E7P|J Chain J, Quinol:fumarate Reductase From Wolinella Succinogenes
Length = 656
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 9/62 (14%)
Query: 212 VLTGDFMWSHGA---ISDETLMLEKTVCNGSTYLRELVNNQESKGCNDVF---NRVNEEF 265
++ G++ H A + ET LEK V Y++ LV ESKG DVF NR+ +
Sbjct: 418 MIVGEYFAEHCANTQVDLETKTLEKFVKGQEAYMKSLV---ESKGTEDVFKIKNRMKDVM 474
Query: 266 GD 267
D
Sbjct: 475 DD 476
>pdb|3MSW|A Chain A, Crystal Structure Of A Protein With Unknown Function
(Bf3112 Bacteroides Fragilis Nctc 9343 At 1.90 A
Resolution
Length = 145
Score = 29.6 bits (65), Expect = 3.4, Method: Composition-based stats.
Identities = 13/46 (28%), Positives = 24/46 (52%)
Query: 98 QLLKNEYSWNLASNMLYVESPIGVGFSYSNTSSDYNLWNDSNTAGD 143
+ +K+ Y+WN+ N ES + + TS +Y++WN + D
Sbjct: 51 KTVKSTYAWNIFKNTWETESRTVISRYETETSVEYSVWNKEKGSFD 96
>pdb|3V8X|A Chain A, The Crystal Structure Of Transferrin Binding Protein A
(Tbpa) From Neisserial Meningitidis Serogroup B In
Complex With Full Length Human Transferrin
Length = 904
Score = 28.9 bits (63), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Query: 89 GPFQPGENGQLLKNEYSWNLASNMLYVESPIGVGFSYSNTSSDYNLWND 137
G F GENG L+ EY + + + +S G+ + Y+N +D + W D
Sbjct: 367 GLFTNGENGALVGAEYGTGVFYDETHTKSRYGLEYVYTN--ADKDTWAD 413
>pdb|3CZK|A Chain A, Crystal Structure Analysis Of Sucrose Hydrolase(Suh)
E322q- Sucrose Complex
pdb|3CZL|A Chain A, Crystal Structure Analysis Of Sucrose Hydrolase(Suh)
E322q- Glucose Complex
Length = 644
Score = 28.9 bits (63), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 45/110 (40%), Gaps = 15/110 (13%)
Query: 343 GGPLDYQYKDFELNIIPQIADLIMEGVPILLFSGDQDTKIPLTQ----TRIIAKNLANDL 398
GPLD Q+ + L+ Q A +++ + L + D L Q IA+ L
Sbjct: 16 AGPLDPQHAEVLLSRYDQHASRLLDALHAL-YGQRADYASWLAQWLGEVGDIARQRPQAL 74
Query: 399 KLFPTTNYANWYDKQQVGGWSQSFGAFRDGKNITYLTYATVRGAAHEVPY 448
+ +T +A W+ + + G+S F T++G A VPY
Sbjct: 75 QTLDSTRHAGWFGQPHMLGYSAYADRFA----------GTLQGVAERVPY 114
>pdb|3V89|A Chain A, The Crystal Structure Of Transferrin Binding Protein A
(Tbpa) From Neisseria Meningitidis Serogroup B In
Complex With The C-Lobe Of Human Transferrin
Length = 904
Score = 28.9 bits (63), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Query: 89 GPFQPGENGQLLKNEYSWNLASNMLYVESPIGVGFSYSNTSSDYNLWND 137
G F GENG L+ EY + + + +S G+ + Y+N +D + W D
Sbjct: 367 GLFTNGENGALVGAEYGTGVFYDETHTKSRYGLEYVYTN--ADKDTWAD 413
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.428
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,752,244
Number of Sequences: 62578
Number of extensions: 718266
Number of successful extensions: 1472
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1400
Number of HSP's gapped (non-prelim): 32
length of query: 473
length of database: 14,973,337
effective HSP length: 102
effective length of query: 371
effective length of database: 8,590,381
effective search space: 3187031351
effective search space used: 3187031351
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)