BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037034
(130 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2QAI|A Chain A, Crystal Structure Of The V-Type Atp Synthase Subunit F
From Pyrococcus Furiosus. Nesg Target Pfr7.
pdb|2QAI|B Chain B, Crystal Structure Of The V-Type Atp Synthase Subunit F
From Pyrococcus Furiosus. Nesg Target Pfr7
Length = 111
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 43/87 (49%), Gaps = 10/87 (11%)
Query: 15 IAMIADEDTVTGFLLAGVGNVDLRRKTNYLIVDSKTTVKAIEDAFKEFTTKEDIAIVLIS 74
I + D DTV GF LAGV Y +S +V+ + +E ++D+ I+LI+
Sbjct: 3 IVVXGDSDTVVGFRLAGV-------HEAYEYDESLESVERARNKLRELLERDDVGIILIT 55
Query: 75 QYVANMIRFLVDSYNKPIPAILEIPSK 101
+ +A I L + P IL+IP K
Sbjct: 56 ERLAQRIGSLPEV---KFPIILQIPDK 79
>pdb|2I4R|A Chain A, Crystal Structure Of The V-Type Atp Synthase Subunit F
From Archaeoglobus Fulgidus. Nesg Target Gr52a.
pdb|2I4R|B Chain B, Crystal Structure Of The V-Type Atp Synthase Subunit F
From Archaeoglobus Fulgidus. Nesg Target Gr52a
Length = 102
Score = 35.0 bits (79), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 42/92 (45%), Gaps = 24/92 (26%)
Query: 15 IAMIADEDTVTGFLLAGVGNVDLRRKTNYLIVDSKTTVKAIEDAFKEFTTKEDIAIVLIS 74
+A++ D D GF LAG+ ++ Y + + VKA+ED K ++D+ +V+
Sbjct: 12 LAVVGDPDFTIGFXLAGISDI-------YEVTSDEEIVKAVEDVLK----RDDVGVVIXK 60
Query: 75 QYVANMIRFLVDSYNKPIPAIL--EIPSKDHP 104
Q Y K +P +L EI K P
Sbjct: 61 Q-----------EYLKKLPPVLRREIDEKVEP 81
>pdb|1RD5|A Chain A, Crystal Structure Of Tryptophan Synthase Alpha Chain
Homolog Bx1: A Member Of The Chemical Plant Defense
System
pdb|1RD5|B Chain B, Crystal Structure Of Tryptophan Synthase Alpha Chain
Homolog Bx1: A Member Of The Chemical Plant Defense
System
Length = 262
Score = 30.8 bits (68), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 4/71 (5%)
Query: 48 SKTTVKAIEDAFKEFTTKEDIAIVLISQYVANMIRFLVDSYNKPIPAILEIPSKDHPYDP 107
S TT+ A+ + +E T + +VL+S Y M R L + ++ +P D PY
Sbjct: 75 SGTTMDAVLEMLREVTPELSCPVVLLSYYKPIMFRSLAKMKEAGVHGLI-VP--DLPYVA 131
Query: 108 AHDSVLSRVKN 118
AH S+ S KN
Sbjct: 132 AH-SLWSEAKN 141
>pdb|3NUZ|A Chain A, Crystal Structure Of A Putative Acetyl Xylan Esterase
(Bf1801) From Bacteroides Fragilis Nctc 9343 At 2.30 A
Resolution
pdb|3NUZ|B Chain B, Crystal Structure Of A Putative Acetyl Xylan Esterase
(Bf1801) From Bacteroides Fragilis Nctc 9343 At 2.30 A
Resolution
pdb|3NUZ|C Chain C, Crystal Structure Of A Putative Acetyl Xylan Esterase
(Bf1801) From Bacteroides Fragilis Nctc 9343 At 2.30 A
Resolution
pdb|3NUZ|D Chain D, Crystal Structure Of A Putative Acetyl Xylan Esterase
(Bf1801) From Bacteroides Fragilis Nctc 9343 At 2.30 A
Resolution
pdb|3NUZ|E Chain E, Crystal Structure Of A Putative Acetyl Xylan Esterase
(Bf1801) From Bacteroides Fragilis Nctc 9343 At 2.30 A
Resolution
pdb|3NUZ|F Chain F, Crystal Structure Of A Putative Acetyl Xylan Esterase
(Bf1801) From Bacteroides Fragilis Nctc 9343 At 2.30 A
Resolution
Length = 398
Score = 27.3 bits (59), Expect = 2.1, Method: Composition-based stats.
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 77 VANMIRFLVDSYNKPIPAILEIP 99
V+ + + D+ NKP+PAIL IP
Sbjct: 104 VSTFLVLIPDNINKPVPAILCIP 126
>pdb|3MCX|A Chain A, Crystal Structure Of Susd Superfamily Protein (bt_2365)
From Bacteroides Thetaiotaomicron Vpi-5482 At 1.49 A
Resolution
Length = 477
Score = 26.6 bits (57), Expect = 3.6, Method: Composition-based stats.
Identities = 25/89 (28%), Positives = 35/89 (39%), Gaps = 3/89 (3%)
Query: 39 RKTNYLIVDSKTTVKAIEDAFKEFTTKEDIAIVLISQYVANMIRFLVDSYNKPIPAILEI 98
R+TN LI ++ D KE + A+V + N+ R Y A L +
Sbjct: 96 RQTNNLIQKIESGSIQSSDT-KELNRIKSEALVXRGLSLFNLTRLFGXPYTNDKGASLGV 154
Query: 99 PSKDHPYDPAHDSVLSRVKNLFSAESVAS 127
P + P DP H S V + E V S
Sbjct: 155 PIETSPSDPTHKPSRSTVAQCY--EQVVS 181
>pdb|2WQP|A Chain A, Crystal Structure Of Sialic Acid Synthase Neub-Inhibitor
Complex
Length = 349
Score = 26.2 bits (56), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 5 AQIPTKSSALIAMIADEDTVTGFLLAGVGNVDLRRKTN 42
+ PTK A +++AD+D G LL+G N+ ++R N
Sbjct: 281 GEKPTKDFAFASVVADKDIKKGELLSG-DNLWVKRPGN 317
>pdb|1XUU|A Chain A, Crystal Structure Of Sialic Acid Synthase (Neub) In
Complex With Mn2+ And Malate From Neisseria Meningitidis
pdb|1XUZ|A Chain A, Crystal Structure Analysis Of Sialic Acid Synthase
(Neub)from Neisseria Meningitidis, Bound To Mn2+,
Phosphoenolpyruvate, And N- Acetyl Mannosaminitol
pdb|2ZDR|A Chain A, Crystal Structure Of Sialic Acid Synthase (Neub) From
Neisseria Meningitidis In Complex With Mg2+ And (4s)-2-
Methyl-2,4-Pentanediol
pdb|3CM4|A Chain A, Crystal Structure Of Metal-Free Sialic Acid Synthase
(Neub) From Neisseria Meningitidis In Complex With
Malate
Length = 349
Score = 26.2 bits (56), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 5 AQIPTKSSALIAMIADEDTVTGFLLAGVGNVDLRRKTN 42
+ PTK A +++AD+D G LL+G N+ ++R N
Sbjct: 281 GEKPTKDFAFASVVADKDIKKGELLSG-DNLWVKRPGN 317
>pdb|2YIN|A Chain A, Structure Of The Complex Between Dock2 And Rac1.
pdb|2YIN|B Chain B, Structure Of The Complex Between Dock2 And Rac1
Length = 436
Score = 25.8 bits (55), Expect = 6.7, Method: Composition-based stats.
Identities = 9/32 (28%), Positives = 22/32 (68%)
Query: 48 SKTTVKAIEDAFKEFTTKEDIAIVLISQYVAN 79
S+TT+ +E+A + +T + +++I+QY ++
Sbjct: 302 SQTTISPLENAIETMSTANEKILMMINQYQSD 333
>pdb|3B13|A Chain A, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
pdb|3B13|C Chain C, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
Length = 431
Score = 25.8 bits (55), Expect = 6.7, Method: Composition-based stats.
Identities = 9/32 (28%), Positives = 22/32 (68%)
Query: 48 SKTTVKAIEDAFKEFTTKEDIAIVLISQYVAN 79
S+TT+ +E+A + +T + +++I+QY ++
Sbjct: 297 SQTTISPLENAIETMSTANEKILMMINQYQSD 328
>pdb|3FME|A Chain A, Crystal Structure Of Human Mitogen-Activated Protein
Kinase Kinase 6 (Mek6) Activated Mutant (S207d, T211d)
Length = 290
Score = 25.4 bits (54), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 9/66 (13%)
Query: 60 KEFTTKEDIAIVLISQYVANMIRFLVDSYNKPIPAILEIPSKDHPYDPAHDSVLSRVKNL 119
K ++ K DI + I+ ++RF DS+ P + ++ + P PA +
Sbjct: 188 KGYSVKSDIWSLGITMIELAILRFPYDSWGTPFQQLKQVVEEPSPQLPA---------DK 238
Query: 120 FSAESV 125
FSAE V
Sbjct: 239 FSAEFV 244
>pdb|1XTE|A Chain A, Crystal Structure Of Cisk-Px Domain
Length = 154
Score = 25.4 bits (54), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 25/39 (64%), Gaps = 2/39 (5%)
Query: 73 ISQYVANMIRFLVDSYNKP-IPAILEIPSKDHPYDPAHD 110
+++++ N++R+ + YN P + A L++ S H DP+ D
Sbjct: 88 LNEFIQNLVRY-PELYNHPDVRAFLQMDSPRHQSDPSED 125
>pdb|3VN9|A Chain A, Rifined Crystal Structure Of Non-Phosphorylated Map2k6 In
A Putative Auto-Inhibition State
Length = 340
Score = 25.4 bits (54), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 9/66 (13%)
Query: 60 KEFTTKEDIAIVLISQYVANMIRFLVDSYNKPIPAILEIPSKDHPYDPAHDSVLSRVKNL 119
K ++ K DI + I+ ++RF DS+ P + ++ + P PA +
Sbjct: 232 KGYSVKSDIWSLGITMIELAILRFPYDSWGTPFQQLKQVVEEPSPQLPA---------DK 282
Query: 120 FSAESV 125
FSAE V
Sbjct: 283 FSAEFV 288
>pdb|3MFM|C Chain C, Crystal Structures And Mutational Analyses Of Acyl-Coa
Carboxylase Subunit Of Streptomyces Coelicolor
pdb|3MFM|F Chain F, Crystal Structures And Mutational Analyses Of Acyl-Coa
Carboxylase Subunit Of Streptomyces Coelicolor
pdb|3MFM|A Chain A, Crystal Structures And Mutational Analyses Of Acyl-Coa
Carboxylase Subunit Of Streptomyces Coelicolor
pdb|3MFM|B Chain B, Crystal Structures And Mutational Analyses Of Acyl-Coa
Carboxylase Subunit Of Streptomyces Coelicolor
pdb|3MFM|D Chain D, Crystal Structures And Mutational Analyses Of Acyl-Coa
Carboxylase Subunit Of Streptomyces Coelicolor
pdb|3MFM|E Chain E, Crystal Structures And Mutational Analyses Of Acyl-Coa
Carboxylase Subunit Of Streptomyces Coelicolor
Length = 530
Score = 25.4 bits (54), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 14/57 (24%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Query: 71 VLISQYVANMIRFLVDSYNKPIPAILEIPSKDHPYDPAHDSVLSRVKNLFSAESVAS 127
+ S+ A +R D++N P+ +++P D HD ++ R L A + A+
Sbjct: 350 ITASEKAARFVR-TCDAFNVPVLTFVDVPGFLPGVDQEHDGIIRRGAKLIFAYAEAT 405
>pdb|1XNV|A Chain A, Acyl-Coa Carboxylase Beta Subunit From S. Coelicolor
(Pccb), Apo Form #1
pdb|1XNV|B Chain B, Acyl-Coa Carboxylase Beta Subunit From S. Coelicolor
(Pccb), Apo Form #1
pdb|1XNY|A Chain A, Biotin And Propionyl-coa Bound To Acyl-coa Carboxylase
Beta Subunit From S. Coelicolor (pccb)
pdb|1XNY|B Chain B, Biotin And Propionyl-coa Bound To Acyl-coa Carboxylase
Beta Subunit From S. Coelicolor (pccb)
pdb|1XO6|A Chain A, Acyl-Coa Carboxylase Beta Subunit From S. Coelicolor
(Pccb), Apo Form #3
pdb|1XO6|B Chain B, Acyl-Coa Carboxylase Beta Subunit From S. Coelicolor
(Pccb), Apo Form #3
pdb|1XO6|C Chain C, Acyl-Coa Carboxylase Beta Subunit From S. Coelicolor
(Pccb), Apo Form #3
pdb|1XO6|D Chain D, Acyl-Coa Carboxylase Beta Subunit From S. Coelicolor
(Pccb), Apo Form #3
pdb|1XO6|E Chain E, Acyl-Coa Carboxylase Beta Subunit From S. Coelicolor
(Pccb), Apo Form #3
pdb|1XO6|F Chain F, Acyl-Coa Carboxylase Beta Subunit From S. Coelicolor
(Pccb), Apo Form #3
Length = 530
Score = 25.4 bits (54), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 14/57 (24%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Query: 71 VLISQYVANMIRFLVDSYNKPIPAILEIPSKDHPYDPAHDSVLSRVKNLFSAESVAS 127
+ S+ A +R D++N P+ +++P D HD ++ R L A + A+
Sbjct: 350 ITASEKAARFVR-TCDAFNVPVLTFVDVPGFLPGVDQEHDGIIRRGAKLIFAYAEAT 405
>pdb|1XNW|A Chain A, Acyl-Coa Carboxylase Beta Subunit From S. Coelicolor
(Pccb), Apo Form #2, Mutant D422i
pdb|1XNW|B Chain B, Acyl-Coa Carboxylase Beta Subunit From S. Coelicolor
(Pccb), Apo Form #2, Mutant D422i
pdb|1XNW|C Chain C, Acyl-Coa Carboxylase Beta Subunit From S. Coelicolor
(Pccb), Apo Form #2, Mutant D422i
pdb|1XNW|D Chain D, Acyl-Coa Carboxylase Beta Subunit From S. Coelicolor
(Pccb), Apo Form #2, Mutant D422i
pdb|1XNW|E Chain E, Acyl-Coa Carboxylase Beta Subunit From S. Coelicolor
(Pccb), Apo Form #2, Mutant D422i
pdb|1XNW|F Chain F, Acyl-Coa Carboxylase Beta Subunit From S. Coelicolor
(Pccb), Apo Form #2, Mutant D422i
Length = 530
Score = 25.4 bits (54), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 14/57 (24%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Query: 71 VLISQYVANMIRFLVDSYNKPIPAILEIPSKDHPYDPAHDSVLSRVKNLFSAESVAS 127
+ S+ A +R D++N P+ +++P D HD ++ R L A + A+
Sbjct: 350 ITASEKAARFVR-TCDAFNVPVLTFVDVPGFLPGVDQEHDGIIRRGAKLIFAYAEAT 405
>pdb|3IBB|A Chain A, Propionyl-Coa Carboxylase Beta Subunit, D422a
pdb|3IBB|B Chain B, Propionyl-Coa Carboxylase Beta Subunit, D422a
pdb|3IBB|C Chain C, Propionyl-Coa Carboxylase Beta Subunit, D422a
pdb|3IBB|D Chain D, Propionyl-Coa Carboxylase Beta Subunit, D422a
pdb|3IBB|E Chain E, Propionyl-Coa Carboxylase Beta Subunit, D422a
pdb|3IBB|F Chain F, Propionyl-Coa Carboxylase Beta Subunit, D422a
Length = 530
Score = 25.4 bits (54), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 14/57 (24%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Query: 71 VLISQYVANMIRFLVDSYNKPIPAILEIPSKDHPYDPAHDSVLSRVKNLFSAESVAS 127
+ S+ A +R D++N P+ +++P D HD ++ R L A + A+
Sbjct: 350 ITASEKAARFVR-TCDAFNVPVLTFVDVPGFLPGVDQEHDGIIRRGAKLIFAYAEAT 405
>pdb|3IB9|A Chain A, Propionyl-Coa Carboxylase Beta Subunit, D422l
pdb|3IB9|B Chain B, Propionyl-Coa Carboxylase Beta Subunit, D422l
Length = 530
Score = 25.4 bits (54), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 14/57 (24%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Query: 71 VLISQYVANMIRFLVDSYNKPIPAILEIPSKDHPYDPAHDSVLSRVKNLFSAESVAS 127
+ S+ A +R D++N P+ +++P D HD ++ R L A + A+
Sbjct: 350 ITASEKAARFVR-TCDAFNVPVLTFVDVPGFLPGVDQEHDGIIRRGAKLIFAYAEAT 405
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.362
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,290,812
Number of Sequences: 62578
Number of extensions: 112800
Number of successful extensions: 298
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 288
Number of HSP's gapped (non-prelim): 20
length of query: 130
length of database: 14,973,337
effective HSP length: 88
effective length of query: 42
effective length of database: 9,466,473
effective search space: 397591866
effective search space used: 397591866
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)