BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037034
(130 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9ZQX4|VATF_ARATH V-type proton ATPase subunit F OS=Arabidopsis thaliana GN=VHA-F
PE=2 SV=1
Length = 128
Score = 228 bits (582), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 107/126 (84%), Positives = 120/126 (95%)
Query: 1 MAGRAQIPTKSSALIAMIADEDTVTGFLLAGVGNVDLRRKTNYLIVDSKTTVKAIEDAFK 60
MAGRA IP ++SALIAMIADEDTV GFL+AGVGNVD+RRKTNYLIVDSKTTV+ IEDAFK
Sbjct: 1 MAGRATIPARNSALIAMIADEDTVVGFLMAGVGNVDIRRKTNYLIVDSKTTVRQIEDAFK 60
Query: 61 EFTTKEDIAIVLISQYVANMIRFLVDSYNKPIPAILEIPSKDHPYDPAHDSVLSRVKNLF 120
EF+ ++DIAI+L+SQY+ANMIRFLVDSYNKP+PAILEIPSKDHPYDPAHDSVLSRVK LF
Sbjct: 61 EFSARDDIAIILLSQYIANMIRFLVDSYNKPVPAILEIPSKDHPYDPAHDSVLSRVKYLF 120
Query: 121 SAESVA 126
SAESV+
Sbjct: 121 SAESVS 126
>sp|Q55AH5|VATF_DICDI V-type proton ATPase subunit F OS=Dictyostelium discoideum GN=vatF
PE=3 SV=1
Length = 120
Score = 144 bits (363), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 66/112 (58%), Positives = 88/112 (78%)
Query: 12 SALIAMIADEDTVTGFLLAGVGNVDLRRKTNYLIVDSKTTVKAIEDAFKEFTTKEDIAIV 71
+AL+A+I DED VTGFLLAGVG D ++ N+L+VDSKT+ IE AFK FTT+ DIAI+
Sbjct: 9 TALVAVIGDEDVVTGFLLAGVGQKDKKKNENFLVVDSKTSQAKIETAFKSFTTRNDIAII 68
Query: 72 LISQYVANMIRFLVDSYNKPIPAILEIPSKDHPYDPAHDSVLSRVKNLFSAE 123
+I+Q VA+ IR+L+D Y++ IP ILEIPSKDHPYDP DSV+ +VK + ++
Sbjct: 69 MITQKVADEIRYLIDEYHQVIPTILEIPSKDHPYDPKKDSVMLKVKKMTGSD 120
>sp|P50408|VATF_RAT V-type proton ATPase subunit F OS=Rattus norvegicus GN=Atp6v1f PE=1
SV=1
Length = 119
Score = 144 bits (363), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 64/125 (51%), Positives = 91/125 (72%), Gaps = 7/125 (5%)
Query: 1 MAGRAQIPTKSSALIAMIADEDTVTGFLLAGVGNVDLRRKTNYLIVDSKTTVKAIEDAFK 60
MAGR + LIA+I DEDTVTGFLL G+G ++ R N+L+V+ TT+ IED F+
Sbjct: 1 MAGRGK-------LIAVIGDEDTVTGFLLGGIGELNKNRHPNFLVVEKDTTINEIEDTFR 53
Query: 61 EFTTKEDIAIVLISQYVANMIRFLVDSYNKPIPAILEIPSKDHPYDPAHDSVLSRVKNLF 120
+F ++DI I+LI+QY+A M+R +D++ + IPA+LEIPSK+HPYD A DS+L R K +F
Sbjct: 54 QFLNRDDIGIILINQYIAEMVRHALDAHQRSIPAVLEIPSKEHPYDAAKDSILRRAKGMF 113
Query: 121 SAESV 125
+AE +
Sbjct: 114 TAEDL 118
>sp|Q9D1K2|VATF_MOUSE V-type proton ATPase subunit F OS=Mus musculus GN=Atp6v1f PE=1 SV=2
Length = 119
Score = 144 bits (363), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 64/125 (51%), Positives = 91/125 (72%), Gaps = 7/125 (5%)
Query: 1 MAGRAQIPTKSSALIAMIADEDTVTGFLLAGVGNVDLRRKTNYLIVDSKTTVKAIEDAFK 60
MAGR + LIA+I DEDTVTGFLL G+G ++ R N+L+V+ TT+ IED F+
Sbjct: 1 MAGRGK-------LIAVIGDEDTVTGFLLGGIGELNKNRHPNFLVVEKDTTINEIEDTFR 53
Query: 61 EFTTKEDIAIVLISQYVANMIRFLVDSYNKPIPAILEIPSKDHPYDPAHDSVLSRVKNLF 120
+F ++DI I+LI+QY+A M+R +D++ + IPA+LEIPSK+HPYD A DS+L R K +F
Sbjct: 54 QFLNRDDIGIILINQYIAEMVRHALDAHQRSIPAVLEIPSKEHPYDAAKDSILRRAKGMF 113
Query: 121 SAESV 125
+AE +
Sbjct: 114 TAEDL 118
>sp|Q28029|VATF_BOVIN V-type proton ATPase subunit F OS=Bos taurus GN=ATP6V1F PE=3 SV=2
Length = 119
Score = 143 bits (361), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 63/125 (50%), Positives = 91/125 (72%), Gaps = 7/125 (5%)
Query: 1 MAGRAQIPTKSSALIAMIADEDTVTGFLLAGVGNVDLRRKTNYLIVDSKTTVKAIEDAFK 60
MAGR + LIA+I DEDTVTGFLL G+G ++ R N+L+V+ TT+ IED F+
Sbjct: 1 MAGRGK-------LIAVIGDEDTVTGFLLGGIGELNKNRHPNFLVVEKDTTINEIEDTFR 53
Query: 61 EFTTKEDIAIVLISQYVANMIRFLVDSYNKPIPAILEIPSKDHPYDPAHDSVLSRVKNLF 120
+F ++DI I+LI+QY+A M+R +D++ + IPA+LEIPSK+HPYD A DS+L R + +F
Sbjct: 54 QFLNRDDIGIILINQYIAEMVRHALDAHQRSIPAVLEIPSKEHPYDAAKDSILRRARGMF 113
Query: 121 SAESV 125
+AE +
Sbjct: 114 TAEDL 118
>sp|Q16864|VATF_HUMAN V-type proton ATPase subunit F OS=Homo sapiens GN=ATP6V1F PE=1 SV=2
Length = 119
Score = 143 bits (360), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 63/125 (50%), Positives = 91/125 (72%), Gaps = 7/125 (5%)
Query: 1 MAGRAQIPTKSSALIAMIADEDTVTGFLLAGVGNVDLRRKTNYLIVDSKTTVKAIEDAFK 60
MAGR + LIA+I DEDTVTGFLL G+G ++ R N+L+V+ TT+ IED F+
Sbjct: 1 MAGRGK-------LIAVIGDEDTVTGFLLGGIGELNKNRHPNFLVVEKDTTINEIEDTFR 53
Query: 61 EFTTKEDIAIVLISQYVANMIRFLVDSYNKPIPAILEIPSKDHPYDPAHDSVLSRVKNLF 120
+F ++DI I+LI+QY+A M+R +D++ + IPA+LEIPSK+HPYD A DS+L R + +F
Sbjct: 54 QFLNRDDIGIILINQYIAEMVRHALDAHQQSIPAVLEIPSKEHPYDAAKDSILRRARGMF 113
Query: 121 SAESV 125
+AE +
Sbjct: 114 TAEDL 118
>sp|Q23680|VATF_CAEEL Probable V-type proton ATPase subunit F OS=Caenorhabditis elegans
GN=vha-9 PE=3 SV=1
Length = 121
Score = 142 bits (357), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 63/110 (57%), Positives = 88/110 (80%)
Query: 14 LIAMIADEDTVTGFLLAGVGNVDLRRKTNYLIVDSKTTVKAIEDAFKEFTTKEDIAIVLI 73
++A+I DEDTV GFLL GVG ++ RK NYLIVD +TTV+ IE+AF F ++DIAI+LI
Sbjct: 9 ILAVIGDEDTVVGFLLGGVGELNKARKPNYLIVDKQTTVQEIEEAFNGFCARDDIAIILI 68
Query: 74 SQYVANMIRFLVDSYNKPIPAILEIPSKDHPYDPAHDSVLSRVKNLFSAE 123
+Q++A MIR+ VD++ + IPA+LEIPSK+ PYDP+ DS+L+R + LF+ E
Sbjct: 69 NQHIAEMIRYAVDNHTQSIPAVLEIPSKEAPYDPSKDSILNRARGLFNPE 118
>sp|Q17029|VATF_ANOGA V-type proton ATPase subunit F OS=Anopheles gambiae GN=Vha14 PE=2
SV=2
Length = 127
Score = 133 bits (335), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 59/116 (50%), Positives = 81/116 (69%)
Query: 14 LIAMIADEDTVTGFLLAGVGNVDLRRKTNYLIVDSKTTVKAIEDAFKEFTTKEDIAIVLI 73
LI++I DEDT GFLL GVG ++ R N+++VD T V IED FK F ++DI I+LI
Sbjct: 11 LISVIGDEDTCVGFLLGGVGEINKNRHPNFMVVDKNTAVSEIEDCFKRFIKRDDIDIILI 70
Query: 74 SQYVANMIRFLVDSYNKPIPAILEIPSKDHPYDPAHDSVLSRVKNLFSAESVASGR 129
+Q A +IR ++DS+ P PA+LEIPSKDHPYD + DS+L R K +F+ E + + R
Sbjct: 71 NQNYAELIRHVIDSHTAPTPAVLEIPSKDHPYDASKDSILRRAKGMFNPEDMIANR 126
>sp|Q1HQK8|VATF_AEDAE V-type proton ATPase subunit F OS=Aedes aegypti GN=AAEL002464 PE=2
SV=1
Length = 127
Score = 132 bits (333), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 57/116 (49%), Positives = 81/116 (69%)
Query: 14 LIAMIADEDTVTGFLLAGVGNVDLRRKTNYLIVDSKTTVKAIEDAFKEFTTKEDIAIVLI 73
LI++I DEDT GFLL G+G ++ R N+++VD T V IED FK F ++DI I+LI
Sbjct: 11 LISVIGDEDTCVGFLLGGIGEINKNRHPNFMVVDKNTAVSEIEDCFKRFIKRDDIDIILI 70
Query: 74 SQYVANMIRFLVDSYNKPIPAILEIPSKDHPYDPAHDSVLSRVKNLFSAESVASGR 129
+Q A MIR ++D++ P PA+LEIPSKDHPYD + DS+L R K +F+ + + + R
Sbjct: 71 NQNYAEMIRHVIDAHTSPTPAVLEIPSKDHPYDASKDSILRRAKGMFNPDDMVANR 126
>sp|Q24583|VATF1_DROME V-type proton ATPase subunit F 1 OS=Drosophila melanogaster
GN=Vha14-1 PE=1 SV=1
Length = 124
Score = 131 bits (329), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 55/112 (49%), Positives = 80/112 (71%)
Query: 14 LIAMIADEDTVTGFLLAGVGNVDLRRKTNYLIVDSKTTVKAIEDAFKEFTTKEDIAIVLI 73
LI++I DEDT GFLL GVG ++ R N+++VD T V +ED FK F ++DI I+LI
Sbjct: 11 LISVIGDEDTCVGFLLGGVGEINKNRHPNFMVVDKNTAVSELEDCFKRFLKRDDIDIILI 70
Query: 74 SQYVANMIRFLVDSYNKPIPAILEIPSKDHPYDPAHDSVLSRVKNLFSAESV 125
+Q A +IR ++D++ P+PA+LEIPSKDHPYD + DS+L R + +F+ E +
Sbjct: 71 NQNCAELIRHVIDAHTSPVPAVLEIPSKDHPYDASKDSILRRARGMFNPEDL 122
>sp|A1DH48|VATF_NEOFI V-type proton ATPase subunit F OS=Neosartorya fischeri (strain ATCC
1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=vma7 PE=3
SV=1
Length = 124
Score = 130 bits (328), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 69/126 (54%), Positives = 89/126 (70%), Gaps = 8/126 (6%)
Query: 1 MAGRAQIPTKSSALIAMIADEDTVTGFLLAGVGNV----DLRRKTNYLIVDSKTTVKAIE 56
MA A + K +A+I DED+VTG LLAG+G+V D +R N+L+VDSKT AIE
Sbjct: 1 MAASA-VSYKERQFLAVIGDEDSVTGLLLAGIGHVTDGPDAQR--NFLVVDSKTETSAIE 57
Query: 57 DAFKEFTT-KEDIAIVLISQYVANMIRFLVDSYNKPIPAILEIPSKDHPYDPAHDSVLSR 115
AF+ FT ++DIA++LI+Q++A IR VDS+ P PA+LEIPSKDHPYDP DSVL R
Sbjct: 58 KAFQNFTQERKDIAVLLINQHIAERIRHSVDSFADPFPAVLEIPSKDHPYDPEKDSVLKR 117
Query: 116 VKNLFS 121
V+ LF
Sbjct: 118 VRRLFG 123
>sp|O44091|VATF1_DROPS V-type proton ATPase subunit F 1 OS=Drosophila pseudoobscura
pseudoobscura GN=Vha14 PE=2 SV=2
Length = 124
Score = 130 bits (328), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 55/112 (49%), Positives = 80/112 (71%)
Query: 14 LIAMIADEDTVTGFLLAGVGNVDLRRKTNYLIVDSKTTVKAIEDAFKEFTTKEDIAIVLI 73
LI++I DEDT GFLL GVG ++ R N+++VD T V +ED FK F ++DI I+LI
Sbjct: 11 LISVIGDEDTCVGFLLGGVGEINKNRHPNFMVVDKNTPVSELEDCFKRFLKRDDIDIILI 70
Query: 74 SQYVANMIRFLVDSYNKPIPAILEIPSKDHPYDPAHDSVLSRVKNLFSAESV 125
+Q A +IR ++D++ P+PA+LEIPSKDHPYD + DS+L R + +F+ E +
Sbjct: 71 NQNCAELIRHVIDAHTSPVPAVLEIPSKDHPYDASKDSILRRARGMFNPEDL 122
>sp|Q9I8H3|VATF_XENLA V-type proton ATPase subunit F (Fragment) OS=Xenopus laevis
GN=atp6s14 PE=3 SV=1
Length = 110
Score = 130 bits (327), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 55/109 (50%), Positives = 82/109 (75%)
Query: 17 MIADEDTVTGFLLAGVGNVDLRRKTNYLIVDSKTTVKAIEDAFKEFTTKEDIAIVLISQY 76
+I DEDTVTGFLL G+G ++ RK N+L+V+ +T+V IE+ F+ F ++DI I+LI+Q+
Sbjct: 1 VIGDEDTVTGFLLGGIGELNKNRKPNFLVVEKETSVTEIEETFRSFLNRDDIGIILINQF 60
Query: 77 VANMIRFLVDSYNKPIPAILEIPSKDHPYDPAHDSVLSRVKNLFSAESV 125
+A MIR ++D++ IPA+LEIPSK+HPYD DS+L R K +F+ E +
Sbjct: 61 IAEMIRHVIDTHTISIPAVLEIPSKEHPYDATKDSILRRAKGMFTMEDL 109
>sp|P31478|VATF_MANSE V-type proton ATPase subunit F OS=Manduca sexta GN=VHA14 PE=2 SV=1
Length = 124
Score = 129 bits (325), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 58/125 (46%), Positives = 86/125 (68%), Gaps = 3/125 (2%)
Query: 1 MAGRAQIPTKSSALIAMIADEDTVTGFLLAGVGNVDLRRKTNYLIVDSKTTVKAIEDAFK 60
MA A + K LI++I DEDT GFLL G+G ++ R N+++VD T V IE+ FK
Sbjct: 1 MALHAAVKGK---LISVIGDEDTCVGFLLGGIGEINKNRHPNFMVVDKNTPVSEIEECFK 57
Query: 61 EFTTKEDIAIVLISQYVANMIRFLVDSYNKPIPAILEIPSKDHPYDPAHDSVLSRVKNLF 120
F ++DI I+LI+Q VA ++R ++D++ P+P++LEIPSKDHPYD + DS+L R K +F
Sbjct: 58 RFVKRDDIDIILINQNVAELVRHVIDAHTAPVPSVLEIPSKDHPYDASKDSILRRAKGMF 117
Query: 121 SAESV 125
+ E +
Sbjct: 118 NPEDL 122
>sp|A6RRW0|VATF_BOTFB V-type proton ATPase subunit F OS=Botryotinia fuckeliana (strain
B05.10) GN=vma7 PE=3 SV=1
Length = 124
Score = 125 bits (314), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 63/115 (54%), Positives = 83/115 (72%), Gaps = 3/115 (2%)
Query: 10 KSSALIAMIADEDTVTGFLLAGVGNVDL--RRKTNYLIVDSKTTVKAIEDAFKEFTT-KE 66
K +A+I DED+VTG LLAG+G+V + N+L+VD+KT AIE+AF+ FTT ++
Sbjct: 9 KDRQFLAVIGDEDSVTGLLLAGIGHVTSPPDSQKNFLVVDNKTDNAAIEEAFERFTTERK 68
Query: 67 DIAIVLISQYVANMIRFLVDSYNKPIPAILEIPSKDHPYDPAHDSVLSRVKNLFS 121
DI I+LI+Q++A IR VD+Y PA+LEIPSKDHPYDP DSVL RV+ LF
Sbjct: 69 DIGILLINQHIAERIRHRVDTYTAAFPALLEIPSKDHPYDPEKDSVLRRVRRLFG 123
>sp|Q9Y756|VATF_NEUCR V-type proton ATPase subunit F OS=Neurospora crassa (strain ATCC
24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
GN=vma-7 PE=3 SV=1
Length = 124
Score = 123 bits (308), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 62/120 (51%), Positives = 83/120 (69%), Gaps = 3/120 (2%)
Query: 5 AQIPTKSSALIAMIADEDTVTGFLLAGVGNVDL--RRKTNYLIVDSKTTVKAIEDAFKEF 62
+Q + +A+I DED+VTG LLAG+G+V + N+L+VD+KT AIE AF F
Sbjct: 4 SQADARDRQFLAVIGDEDSVTGLLLAGIGHVTAPPDSQKNFLVVDNKTDNAAIEAAFDRF 63
Query: 63 TT-KEDIAIVLISQYVANMIRFLVDSYNKPIPAILEIPSKDHPYDPAHDSVLSRVKNLFS 121
TT ++DI IVLI+Q++A+ IR VD++ P +LEIPSKDHPYDP DSVL RV+ LF
Sbjct: 64 TTERKDIGIVLINQHIADRIRHRVDTHTAAFPTVLEIPSKDHPYDPEKDSVLRRVRRLFG 123
>sp|P39111|VATF_YEAST V-type proton ATPase subunit F OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=VMA7 PE=1 SV=1
Length = 118
Score = 119 bits (298), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 61/111 (54%), Positives = 78/111 (70%), Gaps = 3/111 (2%)
Query: 14 LIAMIADEDTVTGFLLAGVGNV--DLRRKTNYLIVDSKTTVKAIEDAFKEFTT-KEDIAI 70
LIA+IADEDT TG LLAG+G + + + K ++ + KTT + I D F FT ++DIAI
Sbjct: 7 LIAVIADEDTTTGLLLAGIGQITPETQEKNFFVYQEGKTTKEEITDKFNHFTEERDDIAI 66
Query: 71 VLISQYVANMIRFLVDSYNKPIPAILEIPSKDHPYDPAHDSVLSRVKNLFS 121
+LI+Q++A IR VDS+ PAILEIPSKDHPYDP DSVL RV+ LF
Sbjct: 67 LLINQHIAENIRARVDSFTNAFPAILEIPSKDHPYDPEKDSVLKRVRKLFG 117
>sp|A7TMI5|VATF_VANPO V-type proton ATPase subunit F OS=Vanderwaltozyma polyspora (strain
ATCC 22028 / DSM 70294) GN=VMA7 PE=3 SV=1
Length = 119
Score = 113 bits (282), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 58/112 (51%), Positives = 76/112 (67%), Gaps = 3/112 (2%)
Query: 13 ALIAMIADEDTVTGFLLAGVGNV--DLRRKTNYLIVDSKTTVKAIEDAFKEFTT-KEDIA 69
LIA+I DEDT TG LLAG+G + + K ++ D KTT + I + F +T ++DIA
Sbjct: 7 TLIAVIGDEDTTTGLLLAGIGQITKETNEKNFFIYEDGKTTKEQILNNFINYTQERQDIA 66
Query: 70 IVLISQYVANMIRFLVDSYNKPIPAILEIPSKDHPYDPAHDSVLSRVKNLFS 121
I+LI+Q++A IR +D+Y PAILEIPSKDHPYDP DSVL RV+ LF
Sbjct: 67 ILLINQHIAEKIRSDIDNYTNAFPAILEIPSKDHPYDPEKDSVLKRVRRLFG 118
>sp|O43046|VATF_SCHPO V-type proton ATPase subunit F OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=vma7 PE=3 SV=1
Length = 120
Score = 111 bits (278), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 54/111 (48%), Positives = 78/111 (70%), Gaps = 1/111 (0%)
Query: 10 KSSALIAMIADEDTVTGFLLAGVGNVDLRRKTNYLIVDSKTTVKAIEDAFKEFTTK-EDI 68
+ L+++I D+DTVTG LLAG G V+ N+ I+ KTT + I +AF ++TTK +DI
Sbjct: 7 RERTLVSVIGDDDTVTGMLLAGTGQVNENGDKNFFIITQKTTDEQIAEAFDDYTTKRKDI 66
Query: 69 AIVLISQYVANMIRFLVDSYNKPIPAILEIPSKDHPYDPAHDSVLSRVKNL 119
AIVLI+Q+ A IR ++++ + PA+LEIPSKD PYDP DS+L RV+ +
Sbjct: 67 AIVLINQFAAERIRDRIENHVQAFPAVLEIPSKDDPYDPEKDSILRRVRKI 117
>sp|Q9VNL3|VATF2_DROME Probable V-type proton ATPase subunit F 2 OS=Drosophila
melanogaster GN=Vha14-2 PE=3 SV=2
Length = 129
Score = 79.3 bits (194), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 36/72 (50%), Positives = 51/72 (70%)
Query: 50 TTVKAIEDAFKEFTTKEDIAIVLISQYVANMIRFLVDSYNKPIPAILEIPSKDHPYDPAH 109
TT K IE+ FK+F + DI I+LI+Q A+MIR VD++N +P +LEIPSK HPYD +
Sbjct: 52 TTPKQIEECFKKFLRRPDIVIILINQVYADMIRPTVDAHNLAVPTVLEIPSKQHPYDSSR 111
Query: 110 DSVLSRVKNLFS 121
DS+L R + + +
Sbjct: 112 DSILKRAQRVIT 123
>sp|O27037|VATF_METTH V-type ATP synthase subunit F OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=atpF PE=3 SV=1
Length = 106
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 61/120 (50%), Gaps = 22/120 (18%)
Query: 12 SALIAMIADEDTVTGFLLAGVGNVDLRRKTNYLIV---DSKTTVK-AIEDAFKEFTTKED 67
S+ IA++ D DTVTGF L GV + Y++ +++ T++ I D F
Sbjct: 2 SSNIAVVGDRDTVTGFRLGGV-------REGYVVETPDEAEETIRNLIRDGF-------- 46
Query: 68 IAIVLISQYVANMIRFLVD--SYNKPIPAILEIPSKDHPYDPAHDSVLSRVKNLFSAESV 125
+I+++++ + + +R ++ + + +P I+EIP K P + D + +K + E V
Sbjct: 47 -SIIIVTEKIGDELREFIEETTSSSALPMIIEIPDKTGPSERETDPLRDLIKRVIGVEMV 105
>sp|Q5JIR4|VATF_PYRKO V-type ATP synthase subunit F OS=Pyrococcus kodakaraensis (strain
ATCC BAA-918 / JCM 12380 / KOD1) GN=atpF PE=3 SV=1
Length = 102
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 46/87 (52%), Gaps = 11/87 (12%)
Query: 15 IAMIADEDTVTGFLLAGVGNVDLRRKTNYLIVDSKTTVKAIEDAFKEFTTKEDIAIVLIS 74
IA++ D DTV GF LAGV Y ++ ++ +++ E +ED+ I+LI+
Sbjct: 3 IAVLGDSDTVLGFRLAGVHEA-------YAFEETPLDIERLKNKLNELIEREDVGIILIT 55
Query: 75 QYVANMIRFLVDSYNKPIPAILEIPSK 101
+ +A V+ + +P IL++P K
Sbjct: 56 ERLAEK----VEIPDVKLPIILQVPDK 78
>sp|Q2NF86|VATF_METST V-type ATP synthase subunit F OS=Methanosphaera stadtmanae (strain
DSM 3091) GN=atpF PE=3 SV=1
Length = 106
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 61/116 (52%), Gaps = 20/116 (17%)
Query: 15 IAMIADEDTVTGFLLAGVGNVDLRRKTNYLI---VDSKTTVKAIEDAFKEFTTKEDIAIV 71
IA++AD DTVTGF+L G+ K+ + + ++KTT+K + D ++ +I+
Sbjct: 5 IAIMADPDTVTGFMLGGI-------KSGFPVHNKEEAKTTLKQLVD--------DEYSII 49
Query: 72 LISQYVANMIRFLVDSY--NKPIPAILEIPSKDHPYDPAHDSVLSRVKNLFSAESV 125
+ ++ + + +R + Y +K +P I+E+P K + D + +K + E V
Sbjct: 50 ITTEKIGDELRDDITKYTGSKALPMIIEVPDKSGSHKRETDPMNDLIKRVIGVEMV 105
>sp|Q9UXU6|VATF_PYRAB V-type ATP synthase subunit F OS=Pyrococcus abyssi (strain GE5 /
Orsay) GN=atpF PE=3 SV=1
Length = 103
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 45/87 (51%), Gaps = 10/87 (11%)
Query: 15 IAMIADEDTVTGFLLAGVGNVDLRRKTNYLIVDSKTTVKAIEDAFKEFTTKEDIAIVLIS 74
+ ++ D DTVTGF LAGV Y S+ +++ + KE ++D+ I+LI+
Sbjct: 3 VVVMGDSDTVTGFRLAGV-------HEAYEFDFSELSIERARNKLKELVERDDVGIILIT 55
Query: 75 QYVANMIRFLVDSYNKPIPAILEIPSK 101
+ +A I D +P IL+IP K
Sbjct: 56 ERLAQRIG---DLPQVNLPIILQIPDK 79
>sp|C6A5E9|VATF_THESM V-type ATP synthase subunit F OS=Thermococcus sibiricus (strain MM
739 / DSM 12597) GN=atpF PE=3 SV=1
Length = 102
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 44/87 (50%), Gaps = 11/87 (12%)
Query: 15 IAMIADEDTVTGFLLAGVGNVDLRRKTNYLIVDSKTTVKAIEDAFKEFTTKEDIAIVLIS 74
I ++ D+DTV GF LAGV Y D+ ++ + + E +ED+ ++LI+
Sbjct: 3 IVVLGDKDTVLGFRLAGV-------HETYSFEDTTHEIERVRNKIMELIEREDVGVILIT 55
Query: 75 QYVANMIRFLVDSYNKPIPAILEIPSK 101
+ +A V+ + P IL+IP K
Sbjct: 56 ERLAQR----VEIPDVAFPIILQIPDK 78
>sp|O06503|VATF_DESSY V-type ATP synthase subunit F OS=Desulfurococcus sp. (strain SY)
GN=atpF PE=3 SV=1
Length = 102
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 11/87 (12%)
Query: 15 IAMIADEDTVTGFLLAGVGNVDLRRKTNYLIVDSKTTVKAIEDAFKEFTTKEDIAIVLIS 74
IA++ D DT GF LAG V Y D+ ++ + + KE + D+ I+LI+
Sbjct: 3 IAVLGDRDTALGFKLAGAHEV-------YAFEDTPLEMERLRNKLKELVERGDVGIILIT 55
Query: 75 QYVANMIRFLVDSYNKPIPAILEIPSK 101
+ A V+ + IP IL++P K
Sbjct: 56 ERFAQR----VEIPDVTIPIILQVPDK 78
>sp|Q8U4A7|VATF_PYRFU V-type ATP synthase subunit F OS=Pyrococcus furiosus (strain ATCC
43587 / DSM 3638 / JCM 8422 / Vc1) GN=atpF PE=1 SV=1
Length = 103
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 44/87 (50%), Gaps = 10/87 (11%)
Query: 15 IAMIADEDTVTGFLLAGVGNVDLRRKTNYLIVDSKTTVKAIEDAFKEFTTKEDIAIVLIS 74
I ++ D DTV GF LAGV Y +S +V+ + +E ++D+ I+LI+
Sbjct: 3 IVVMGDSDTVVGFRLAGV-------HEAYEYDESLESVERARNKLRELLERDDVGIILIT 55
Query: 75 QYVANMIRFLVDSYNKPIPAILEIPSK 101
+ +A I L + P IL+IP K
Sbjct: 56 ERLAQRIGSLPEV---KFPIILQIPDK 79
>sp|Q6LYE8|VATF_METMP V-type ATP synthase subunit F OS=Methanococcus maripaludis (strain
S2 / LL) GN=atpF PE=3 SV=1
Length = 99
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 50/104 (48%), Gaps = 14/104 (13%)
Query: 15 IAMIADEDTVTGFLLAGVGNVDLRRKTNYLIVDSKTTVKAIEDAFKEFTTKEDIAIVLIS 74
I ++ D D V GF LAG+ +V Y + + KAIE E + +I +++ +
Sbjct: 3 IGVVGDPDVVAGFRLAGLTDV-------YEVNSPEQAAKAIE----ELNSNSEIGLIITT 51
Query: 75 QYVANMIRFLVDSYNKPIPAILEIPSKDHPYDPAHDSVLSRVKN 118
+ + IR + S K ++E+P K+ P +D V V+N
Sbjct: 52 ERIGEKIRDAISSIKK---VVVEVPDKNGPIVRENDPVKVLVRN 92
>sp|O57727|VATF_PYRHO V-type ATP synthase subunit F OS=Pyrococcus horikoshii (strain ATCC
700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
GN=atpF PE=3 SV=1
Length = 103
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 45/87 (51%), Gaps = 10/87 (11%)
Query: 15 IAMIADEDTVTGFLLAGVGNVDLRRKTNYLIVDSKTTVKAIEDAFKEFTTKEDIAIVLIS 74
+ ++ D DTV GF LAG+ Y S+ +++ + KE ++D+ I+LI+
Sbjct: 3 VVIMGDSDTVVGFRLAGI-------HEAYEFDLSELSIERARNKLKELVERDDVGIILIT 55
Query: 75 QYVANMIRFLVDSYNKPIPAILEIPSK 101
+ +A I L N PI IL+IP K
Sbjct: 56 ERLAQKIGEL-PQVNLPI--ILQIPDK 79
>sp|C5A335|VATF_THEGJ V-type ATP synthase subunit F OS=Thermococcus gammatolerans (strain
DSM 15229 / JCM 11827 / EJ3) GN=atpF PE=3 SV=1
Length = 102
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 41/87 (47%), Gaps = 11/87 (12%)
Query: 15 IAMIADEDTVTGFLLAGVGNVDLRRKTNYLIVDSKTTVKAIEDAFKEFTTKEDIAIVLIS 74
IA++ D DT GF LAG V Y S ++ + KE ++DI I+LI+
Sbjct: 3 IAVMGDPDTALGFKLAGAHEV-------YSFGSSPLEIERANNKLKELVERDDIGIILIT 55
Query: 75 QYVANMIRFLVDSYNKPIPAILEIPSK 101
+ +A V+ P IL+IP K
Sbjct: 56 ETLAQR----VEVPEVEFPIILQIPDK 78
>sp|B6YV13|VATF_THEON V-type ATP synthase subunit F OS=Thermococcus onnurineus (strain
NA1) GN=atpF PE=3 SV=1
Length = 102
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 43/87 (49%), Gaps = 11/87 (12%)
Query: 15 IAMIADEDTVTGFLLAGVGNVDLRRKTNYLIVDSKTTVKAIEDAFKEFTTKEDIAIVLIS 74
IA++ D+DT GF LAG V Y D+ ++ +++ E +EDI I+LI+
Sbjct: 3 IAVLGDKDTALGFKLAGAHEV-------YSFEDTPLDMERLKNKLNELVEREDIGIILIT 55
Query: 75 QYVANMIRFLVDSYNKPIPAILEIPSK 101
+ I ++ P IL++P K
Sbjct: 56 ERFVQKIGLPDVTF----PIILQVPDK 78
>sp|Q57671|VATF_METJA V-type ATP synthase subunit F OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=atpF PE=3 SV=1
Length = 98
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 46/87 (52%), Gaps = 14/87 (16%)
Query: 15 IAMIADEDTVTGFLLAGVGNVDLRRKTNYLIVDSKTTVKAIEDAFKEFTTKEDIAIVLIS 74
+ ++ D +T GF LAG+ +V Y + + + VKAI E E+IA ++I+
Sbjct: 3 VGVVGDRETAIGFRLAGLTDV-------YEVKNDEEAVKAI----NELANNENIAFIIIT 51
Query: 75 QYVANMIRFLVDSYNKPIPAILEIPSK 101
+ +A I+ + + NK I+EIP K
Sbjct: 52 ERIAESIKDKLKNINK---VIVEIPDK 75
>sp|O29102|VATF_ARCFU V-type ATP synthase subunit F OS=Archaeoglobus fulgidus (strain
ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
GN=atpF PE=1 SV=1
Length = 101
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 24/92 (26%)
Query: 15 IAMIADEDTVTGFLLAGVGNVDLRRKTNYLIVDSKTTVKAIEDAFKEFTTKEDIAIVLIS 74
+A++ D D GF+LAG+ ++ Y + + VKA+ED K ++D+ +V+I
Sbjct: 4 LAVVGDPDFTIGFMLAGISDI-------YEVTSDEEIVKAVEDVLK----RDDVGVVIIK 52
Query: 75 QYVANMIRFLVDSYNKPIPAIL--EIPSKDHP 104
Q Y K +P +L EI K P
Sbjct: 53 Q-----------EYLKKLPPVLRREIDEKVEP 73
>sp|A6UT34|VATF_META3 V-type ATP synthase subunit F OS=Methanococcus aeolicus (strain
Nankai-3 / ATCC BAA-1280) GN=atpF PE=3 SV=1
Length = 99
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 49/112 (43%), Gaps = 20/112 (17%)
Query: 15 IAMIADEDTVTGFLLAGVGNVDLRRKTNYLIVDSKTTVKAIEDAF---KEFTTKEDIAIV 71
IA++ D D GF LAG+ +V VK EDA +E + DI ++
Sbjct: 3 IAVVGDLDMTMGFRLAGLEDV--------------YEVKNAEDALNTIRELDNRADIGLI 48
Query: 72 LISQYVANMIRFLVDSYNKPIPAILEIPSKDHPYDPAHDSVLSRVKNLFSAE 123
+ ++ + IR DS + I+EIP K+ HD V + V+ E
Sbjct: 49 ITTERLGEEIR---DSISNLKKFIVEIPDKNGAIVREHDPVKTLVRKAVGVE 97
>sp|A6UP53|VATF_METVS V-type ATP synthase subunit F OS=Methanococcus vannielii (strain SB
/ ATCC 35089 / DSM 1224) GN=atpF PE=3 SV=1
Length = 99
Score = 36.6 bits (83), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 47/104 (45%), Gaps = 14/104 (13%)
Query: 15 IAMIADEDTVTGFLLAGVGNVDLRRKTNYLIVDSKTTVKAIEDAFKEFTTKEDIAIVLIS 74
I ++ D D GF LAG+ +V Y + + KAIE E +I +++ +
Sbjct: 3 IGVVGDSDVAVGFRLAGLTDV-------YEVKSPEQASKAIE----ELDNNAEIGLIITT 51
Query: 75 QYVANMIRFLVDSYNKPIPAILEIPSKDHPYDPAHDSVLSRVKN 118
+ + IR + + K I+E+P K+ P D V V+N
Sbjct: 52 ERIGEGIRETIANAKK---VIVEVPDKNGPIVREKDPVKILVRN 92
>sp|P75457|END4_MYCPN Probable endonuclease 4 OS=Mycoplasma pneumoniae (strain ATCC 29342
/ M129) GN=nfo PE=1 SV=1
Length = 286
Score = 36.2 bits (82), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 24/44 (54%)
Query: 79 NMIRFLVDSYNKPIPAILEIPSKDHPYDPAHDSVLSRVKNLFSA 122
N++RF+ K IP +LE PS H Y + + + R++ F A
Sbjct: 242 NLMRFIAQPQIKQIPIVLETPSDKHNYPAVYGAEIERIRAWFGA 285
>sp|B0S2A3|VATF_FINM2 V-type ATP synthase subunit F OS=Finegoldia magna (strain ATCC
29328) GN=atpF PE=3 SV=1
Length = 103
Score = 35.4 bits (80), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 50/109 (45%), Gaps = 14/109 (12%)
Query: 15 IAMIADEDTVTGFLLAGVGNVDLRRKTNYLIVDSKTTVKAIEDAFKEFTTKEDIAIVLIS 74
+A++ D D+V F GV + T D++ TV + KED ++ I+
Sbjct: 5 VAVVGDRDSVLVFKALGVDVFESIEST-----DARKTVDRL--------AKEDYGVIFIT 51
Query: 75 QYVANMIRFLVDSYNKPI-PAILEIPSKDHPYDPAHDSVLSRVKNLFSA 122
+ +A I+ +D YN + PAI+ IPS + + + + V+ A
Sbjct: 52 EQIAEKIKETIDRYNDKVSPAIILIPSNQGSLNIGMNRINTNVEKAVGA 100
>sp|B7LUY5|UNG_ESCF3 Uracil-DNA glycosylase OS=Escherichia fergusonii (strain ATCC 35469
/ DSM 13698 / CDC 0568-73) GN=ung PE=3 SV=1
Length = 229
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 54/114 (47%), Gaps = 5/114 (4%)
Query: 13 ALIAMIAD-EDTVTGFLLAGVGNVDLRRKTNYLIVDSKTTVKAIE---DAFKEFTTKEDI 68
+L+ M + E+T+ GF G G ++ + L++++ TV+A + A + T D
Sbjct: 88 SLLNMYKELENTIPGFTRPGHGYLESWARQGVLLLNTVLTVRAGQAHSHASLGWETFTDK 147
Query: 69 AIVLISQYVANMIRFLVDSYNKPIPAILEIPSKDHPYDPAHDSVLSRVKNLFSA 122
I LI+Q+ ++ L S+ + AI++ + H H S LS + F
Sbjct: 148 VISLINQHREGVVFLLWGSHAQKKGAIID-KQRHHVLKAPHPSPLSAHRGFFGC 200
>sp|B2TP92|VATF_CLOBB V-type ATP synthase subunit F OS=Clostridium botulinum (strain
Eklund 17B / Type B) GN=atpF PE=3 SV=1
Length = 103
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 43/93 (46%), Gaps = 26/93 (27%)
Query: 15 IAMIADEDTVTGFLLAG------VGNVDLRRKTNYLIVDSKTTVKAIEDAFKEFTTKEDI 68
I ++ D+D+V F G VGN + ++ + L K D
Sbjct: 5 IGVVGDKDSVLAFKALGIDVFPVVGNEEAKKTVDKL-------------------AKNDY 45
Query: 69 AIVLISQYVANMIRFLVDSYNKPI-PAILEIPS 100
A+V ++++VA I ++ YNK + PA++ IPS
Sbjct: 46 AVVFVTEHVAQGIEETIERYNKEVLPAVILIPS 78
>sp|B2UWY5|VATF_CLOBA V-type ATP synthase subunit F OS=Clostridium botulinum (strain
Alaska E43 / Type E3) GN=atpF PE=3 SV=1
Length = 103
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 43/93 (46%), Gaps = 26/93 (27%)
Query: 15 IAMIADEDTVTGFLLAG------VGNVDLRRKTNYLIVDSKTTVKAIEDAFKEFTTKEDI 68
I ++ D+D+V F G VGN + ++ + L K D
Sbjct: 5 IGVVGDKDSVLAFKALGIDVFPVVGNEEAKKTVDKL-------------------AKNDY 45
Query: 69 AIVLISQYVANMIRFLVDSYNKPI-PAILEIPS 100
A+V ++++VA I ++ YNK + PA++ IPS
Sbjct: 46 AVVFVTEHVAQGIEETIERYNKEVLPAVILIPS 78
>sp|Q8FF08|UNG_ECOL6 Uracil-DNA glycosylase OS=Escherichia coli O6:H1 (strain CFT073 /
ATCC 700928 / UPEC) GN=ung PE=3 SV=3
Length = 228
Score = 33.1 bits (74), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 53/122 (43%), Gaps = 4/122 (3%)
Query: 4 RAQIPTKSSALIAMIADEDTVTGFLLAGVGNVDLRRKTNYLIVDSKTTVKAIE---DAFK 60
R I T S L E+T+ GF G ++ + L++++ TV+A + A
Sbjct: 80 RPGIATPPSLLNMYKELENTIPGFTRPNHGYLESWARQGVLLLNTVLTVRAGQAHSHASL 139
Query: 61 EFTTKEDIAIVLISQYVANMIRFLVDSYNKPIPAILEIPSKDHPYDPAHDSVLSRVKNLF 120
+ T D I LI+Q+ ++ L S+ + AI++ + H H S LS + F
Sbjct: 140 GWETFTDKVISLINQHREGVVFLLWGSHAQKKGAIIDX-QRHHVLKAPHPSPLSAHRGFF 198
Query: 121 SA 122
Sbjct: 199 GC 200
>sp|Q32CT9|UNG_SHIDS Uracil-DNA glycosylase OS=Shigella dysenteriae serotype 1 (strain
Sd197) GN=ung PE=3 SV=1
Length = 229
Score = 32.3 bits (72), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 53/122 (43%), Gaps = 4/122 (3%)
Query: 4 RAQIPTKSSALIAMIADEDTVTGFLLAGVGNVDLRRKTNYLIVDSKTTVKAIE---DAFK 60
R I T S L E+T+ GF G ++ + L++++ TV+A + A
Sbjct: 80 RPGIATPPSLLNMYKELENTIPGFTRPNHGYLESWARQGVLLLNTVLTVRAGQAHSHASL 139
Query: 61 EFTTKEDIAIVLISQYVANMIRFLVDSYNKPIPAILEIPSKDHPYDPAHDSVLSRVKNLF 120
+ T D I LI+Q+ ++ L S+ + AI++ + H H S LS + F
Sbjct: 140 GWETFTDKVISLINQHREGVVFLLWGSHAQKKGAIID-KQRHHVLKAPHPSPLSAHRGFF 198
Query: 121 SA 122
Sbjct: 199 GC 200
>sp|B7N6H1|UNG_ECOLU Uracil-DNA glycosylase OS=Escherichia coli O17:K52:H18 (strain
UMN026 / ExPEC) GN=ung PE=3 SV=1
Length = 229
Score = 32.3 bits (72), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 53/122 (43%), Gaps = 4/122 (3%)
Query: 4 RAQIPTKSSALIAMIADEDTVTGFLLAGVGNVDLRRKTNYLIVDSKTTVKAIE---DAFK 60
R I T S L E+T+ GF G ++ + L++++ TV+A + A
Sbjct: 80 RPGIATPPSLLNMYKELENTIPGFTRPNHGYLESWARQGVLLLNTVLTVRAGQAHSHASL 139
Query: 61 EFTTKEDIAIVLISQYVANMIRFLVDSYNKPIPAILEIPSKDHPYDPAHDSVLSRVKNLF 120
+ T D I LI+Q+ ++ L S+ + AI++ + H H S LS + F
Sbjct: 140 GWETFTDKVISLINQHREGVVFLLWGSHAQKKGAIID-KQRHHVLKAPHPSPLSAHRGFF 198
Query: 121 SA 122
Sbjct: 199 GC 200
>sp|Q0TEQ8|UNG_ECOL5 Uracil-DNA glycosylase OS=Escherichia coli O6:K15:H31 (strain 536 /
UPEC) GN=ung PE=3 SV=1
Length = 229
Score = 32.3 bits (72), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 53/122 (43%), Gaps = 4/122 (3%)
Query: 4 RAQIPTKSSALIAMIADEDTVTGFLLAGVGNVDLRRKTNYLIVDSKTTVKAIE---DAFK 60
R I T S L E+T+ GF G ++ + L++++ TV+A + A
Sbjct: 80 RPGIATPPSLLNMYKELENTIPGFTRPNHGYLESWARQGVLLLNTVLTVRAGQAHSHASL 139
Query: 61 EFTTKEDIAIVLISQYVANMIRFLVDSYNKPIPAILEIPSKDHPYDPAHDSVLSRVKNLF 120
+ T D I LI+Q+ ++ L S+ + AI++ + H H S LS + F
Sbjct: 140 GWETFTDKVISLINQHRKGVVFLLWGSHAQKKGAIID-KQRHHVLKAPHPSPLSAHRGFF 198
Query: 121 SA 122
Sbjct: 199 GC 200
>sp|B7NRN6|UNG_ECO7I Uracil-DNA glycosylase OS=Escherichia coli O7:K1 (strain IAI39 /
ExPEC) GN=ung PE=3 SV=1
Length = 229
Score = 32.3 bits (72), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 53/122 (43%), Gaps = 4/122 (3%)
Query: 4 RAQIPTKSSALIAMIADEDTVTGFLLAGVGNVDLRRKTNYLIVDSKTTVKAIE---DAFK 60
R I T S L E+T+ GF G ++ + L++++ TV+A + A
Sbjct: 80 RPGIATPPSLLNMYKELENTIPGFTRPNHGYLESWARQGVLLLNTVLTVRAGQAHSHASL 139
Query: 61 EFTTKEDIAIVLISQYVANMIRFLVDSYNKPIPAILEIPSKDHPYDPAHDSVLSRVKNLF 120
+ T D I LI+Q+ ++ L S+ + AI++ + H H S LS + F
Sbjct: 140 GWETFTDKVISLINQHRKGVVFLLWGSHAQKKGAIID-KQRHHVLKAPHPSPLSAHRGFF 198
Query: 121 SA 122
Sbjct: 199 GC 200
>sp|B5Z154|UNG_ECO5E Uracil-DNA glycosylase OS=Escherichia coli O157:H7 (strain EC4115 /
EHEC) GN=ung PE=3 SV=1
Length = 229
Score = 32.3 bits (72), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 53/122 (43%), Gaps = 4/122 (3%)
Query: 4 RAQIPTKSSALIAMIADEDTVTGFLLAGVGNVDLRRKTNYLIVDSKTTVKAIE---DAFK 60
R I T S L E+T+ GF G ++ + L++++ TV+A + A
Sbjct: 80 RPGIATPPSLLNMYKELENTIPGFTRPNHGYLESWARQGVLLLNTVLTVRAGQAHSHASL 139
Query: 61 EFTTKEDIAIVLISQYVANMIRFLVDSYNKPIPAILEIPSKDHPYDPAHDSVLSRVKNLF 120
+ T D I LI+Q+ ++ L S+ + AI++ + H H S LS + F
Sbjct: 140 GWETFTDKVISLINQHREGVVFLLWGSHAQKKGAIID-KQRHHVLKAPHPSPLSAHRGFF 198
Query: 121 SA 122
Sbjct: 199 GC 200
>sp|Q8X444|UNG_ECO57 Uracil-DNA glycosylase OS=Escherichia coli O157:H7 GN=ung PE=3 SV=3
Length = 229
Score = 32.3 bits (72), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 53/122 (43%), Gaps = 4/122 (3%)
Query: 4 RAQIPTKSSALIAMIADEDTVTGFLLAGVGNVDLRRKTNYLIVDSKTTVKAIE---DAFK 60
R I T S L E+T+ GF G ++ + L++++ TV+A + A
Sbjct: 80 RPGIATPPSLLNMYKELENTIPGFTRPNHGYLESWARQGVLLLNTVLTVRAGQAHSHASL 139
Query: 61 EFTTKEDIAIVLISQYVANMIRFLVDSYNKPIPAILEIPSKDHPYDPAHDSVLSRVKNLF 120
+ T D I LI+Q+ ++ L S+ + AI++ + H H S LS + F
Sbjct: 140 GWETFTDKVISLINQHREGVVFLLWGSHAQKKGAIID-KQRHHVLKAPHPSPLSAHRGFF 198
Query: 121 SA 122
Sbjct: 199 GC 200
>sp|Q1R8F2|UNG_ECOUT Uracil-DNA glycosylase OS=Escherichia coli (strain UTI89 / UPEC)
GN=ung PE=3 SV=1
Length = 229
Score = 32.3 bits (72), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 53/122 (43%), Gaps = 4/122 (3%)
Query: 4 RAQIPTKSSALIAMIADEDTVTGFLLAGVGNVDLRRKTNYLIVDSKTTVKAIE---DAFK 60
R I T S L E+T+ GF G ++ + L++++ TV+A + A
Sbjct: 80 RPGIATPPSLLNMYKELENTIPGFTRPNHGYLESWARQGVLLLNTVLTVRAGQAHSHASL 139
Query: 61 EFTTKEDIAIVLISQYVANMIRFLVDSYNKPIPAILEIPSKDHPYDPAHDSVLSRVKNLF 120
+ T D I LI+Q+ ++ L S+ + AI++ + H H S LS + F
Sbjct: 140 GWETFTDKVISLINQHREGVVFLLWGSHAQKKGAIID-KQRHHVLKAPHPSPLSAHRGFF 198
Query: 121 SA 122
Sbjct: 199 GC 200
>sp|B1LP93|UNG_ECOSM Uracil-DNA glycosylase OS=Escherichia coli (strain SMS-3-5 / SECEC)
GN=ung PE=3 SV=1
Length = 229
Score = 32.3 bits (72), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 53/122 (43%), Gaps = 4/122 (3%)
Query: 4 RAQIPTKSSALIAMIADEDTVTGFLLAGVGNVDLRRKTNYLIVDSKTTVKAIE---DAFK 60
R I T S L E+T+ GF G ++ + L++++ TV+A + A
Sbjct: 80 RPGIATPPSLLNMYKELENTIPGFTRPNHGYLESWARQGVLLLNTVLTVRAGQAHSHASL 139
Query: 61 EFTTKEDIAIVLISQYVANMIRFLVDSYNKPIPAILEIPSKDHPYDPAHDSVLSRVKNLF 120
+ T D I LI+Q+ ++ L S+ + AI++ + H H S LS + F
Sbjct: 140 GWETFTDKVISLINQHREGVVFLLWGSHAQKKGAIID-KQRHHVLKAPHPSPLSAHRGFF 198
Query: 121 SA 122
Sbjct: 199 GC 200
>sp|A1AEB0|UNG_ECOK1 Uracil-DNA glycosylase OS=Escherichia coli O1:K1 / APEC GN=ung PE=3
SV=1
Length = 229
Score = 32.3 bits (72), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 53/122 (43%), Gaps = 4/122 (3%)
Query: 4 RAQIPTKSSALIAMIADEDTVTGFLLAGVGNVDLRRKTNYLIVDSKTTVKAIE---DAFK 60
R I T S L E+T+ GF G ++ + L++++ TV+A + A
Sbjct: 80 RPGIATPPSLLNMYKELENTIPGFTRPNHGYLESWARQGVLLLNTVLTVRAGQAHSHASL 139
Query: 61 EFTTKEDIAIVLISQYVANMIRFLVDSYNKPIPAILEIPSKDHPYDPAHDSVLSRVKNLF 120
+ T D I LI+Q+ ++ L S+ + AI++ + H H S LS + F
Sbjct: 140 GWETFTDKVISLINQHREGVVFLLWGSHAQKKGAIID-KQRHHVLKAPHPSPLSAHRGFF 198
Query: 121 SA 122
Sbjct: 199 GC 200
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.133 0.362
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,220,555
Number of Sequences: 539616
Number of extensions: 1486806
Number of successful extensions: 4721
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 45
Number of HSP's that attempted gapping in prelim test: 4673
Number of HSP's gapped (non-prelim): 73
length of query: 130
length of database: 191,569,459
effective HSP length: 96
effective length of query: 34
effective length of database: 139,766,323
effective search space: 4752054982
effective search space used: 4752054982
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)